BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein
[Candidatus Liberibacter asiaticus str. psy62]
         (445 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040343|gb|ACT57139.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 445

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 445/445 (100%), Positives = 445/445 (100%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL
Sbjct: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF
Sbjct: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL
Sbjct: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL
Sbjct: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD
Sbjct: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI
Sbjct: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML
Sbjct: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420

Query: 421 EKIDGVSSGMDGFFAVALRRLIQPK 445
           EKIDGVSSGMDGFFAVALRRLIQPK
Sbjct: 421 EKIDGVSSGMDGFFAVALRRLIQPK 445


>gi|209551488|ref|YP_002283405.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537244|gb|ACI57179.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 462

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 227/441 (51%), Positives = 302/441 (68%), Gaps = 4/441 (0%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR  ++ +L  V+ +++ L   LD E+G+ A++ L + D+ LVRAI+N TLR LP
Sbjct: 26  KPGLQARAAAAKILGAVVERKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLP 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RIDA +  +L S LP    +LQ +L + VAQILYLDV D++ VDLAVEQA +D  NR FA
Sbjct: 86  RIDAAISSLLESPLPEGARALQHVLAIGVAQILYLDVPDHSAVDLAVEQANQDPRNRRFA 145

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           KLVN++LRR+ REK E+L  I  ++ +P WF  RLE  YG++  LAIS++ + P  IDLT
Sbjct: 146 KLVNAVLRRLGREKDEVLGEIDKVAPMPAWFIARLEKAYGRDAALAISESQLQPAAIDLT 205

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D E WA +LN V+LPTGG+RL      I SL GF +G WWVQDA+ASIP +LFG L+
Sbjct: 206 VKSDAEGWAKRLNGVVLPTGGVRLAAFDGGIPSLEGFDDGAWWVQDAAASIPAKLFGDLS 265

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
                DLCAAPGGKTAQLI++G  VTALD S+ RL +LR NLDRL L AE I   D   +
Sbjct: 266 GKRAADLCAAPGGKTAQLILAGGAVTALDQSESRLRRLRSNLDRLSLKAETI-AADLTTF 324

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P + FDA+L+DAPCSSTGT RRHPDVLWT+  +DI + A  Q +LL   ++ +KP G +
Sbjct: 325 EPAERFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIGRLAALQERLLRHALTLLKPDGTL 384

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD  + EEVV +VL  +   +E V +++  W  ++ A  ++P G  R  P ML+
Sbjct: 385 VFSNCSLDPTEGEEVVARVLADT-DGIERVRIDAGDWPGLEAA--ITPLGEFRTLPTMLK 441

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
             DG++SG+DGF+A  LRR+ 
Sbjct: 442 MPDGIASGLDGFYAAMLRRVA 462


>gi|254502120|ref|ZP_05114271.1| ribosomal RNA small subunit methyltransferase B [Labrenzia
           alexandrii DFL-11]
 gi|222438191|gb|EEE44870.1| ribosomal RNA small subunit methyltransferase B [Labrenzia
           alexandrii DFL-11]
          Length = 468

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 179/439 (40%), Positives = 261/439 (59%), Gaps = 5/439 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G  AR V++ +L  V+ K+  L   LD+  G S FR L+  D+ LVRAI    LR   
Sbjct: 32  KPGFAARKVAADILGNVVHKKRPLDGELDMASGHSGFRALAANDRALVRAIAGAALRHRG 91

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I  +L  +L   +P K   +  +L V++AQ+ +LD+ D A V LAV+ A  D+  R + 
Sbjct: 92  EITEILGRLLDRDIPEKTGRVLDILHVAIAQMQFLDIPDRAAVSLAVDHASMDRRARPYK 151

Query: 122 KLVNSILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN +LRR+ RE+ E+     A     P+W  E  +  YG+E   AI+ A      +DL
Sbjct: 152 GLVNGVLRRLGRERDEITSDLDAPRLNTPDWLWESWQAAYGEEGARAIAKAHEREAALDL 211

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D   WA KL+ V++  G +RL     ++ +L GF +G WWVQDA+AS+P +L G +
Sbjct: 212 TVKADAAAWAEKLDGVVVGAGSVRL-TKKGAVDALEGFEDGAWWVQDAAASLPAKLLGDV 270

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +   V DLCAAPGGKTAQL   GA++TA+D+SK RL++L  N+ RL L     +  D  +
Sbjct: 271 SGKQVADLCAAPGGKTAQLAAVGAEITAIDISKARLKRLAENMTRLGLS-VTTVAADLRE 329

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P+ LFDA+L+DAPCS+TGTIRRHPDV W +   DI K +  Q  LL + +S++KPGG+
Sbjct: 330 FEPEVLFDAILLDAPCSATGTIRRHPDVPWIKKPYDIEKLSEIQTALLDRVMSWLKPGGV 389

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL++ + E   +  L  +   V LVP++++      +A +++PEG++R  PD  
Sbjct: 390 LVYCTCSLERAEGEGQAEAFLERNKDRVSLVPVDASEIGG--LAESVTPEGYLRCRPDQS 447

Query: 421 EKIDGVSSGMDGFFAVALR 439
              +    GMDGFFA   R
Sbjct: 448 AGPETGLFGMDGFFAARFR 466


>gi|118591346|ref|ZP_01548744.1| SUN protein [Stappia aggregata IAM 12614]
 gi|118436018|gb|EAV42661.1| SUN protein [Stappia aggregata IAM 12614]
          Length = 458

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 180/440 (40%), Positives = 260/440 (59%), Gaps = 5/440 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G  AR V++ +L  V+ K+  L   LD   G S FR L+  D+ LVRAI+   LR   
Sbjct: 22  KPGFAARKVAADILGNVVHKKRPLDGELDTASGHSGFRALAANDRSLVRAIIGAALRHRG 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I  +LD +L   +P K   +  +L V++AQ+L+LD+ D A V LAV+ A  D+  R + 
Sbjct: 82  EIAEILDRLLDRPIPEKTGRVLDILHVAIAQMLFLDIPDRAAVSLAVDHAGLDRRARPYK 141

Query: 122 KLVNSILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN +LRR+ RE+ E+     A +   P+W  E  +  YG E    I+ A  +   +DL
Sbjct: 142 GLVNGVLRRLGRERDEVTADLDAAVLNTPDWLMESWQVAYGPETAREIARAHETEAALDL 201

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +VK D E WA KL+  ++  G +RL     ++ +L G+ +G WWVQDA+A++P +L G +
Sbjct: 202 SVKADPEGWAQKLDGQIVGAGSVRLVR-KGAVDALEGYGDGQWWVQDAAAALPARLLGDV 260

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
             L V DLCAAPGGKTAQL  +GA VTA+D+SK RL++L  N+ RL L   + +  D   
Sbjct: 261 KGLRVADLCAAPGGKTAQLAAAGASVTAVDISKARLKRLEENMTRLGLS-VETVAADLRA 319

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P++ FDA+L+DAPCS+TGTIRRHPDV W +   DI K    Q +LL + + +VKPGG+
Sbjct: 320 FEPEEPFDAILLDAPCSATGTIRRHPDVPWIKKPYDIEKLTEIQSELLDRVVGWVKPGGL 379

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL+  + E  V   L      +EL+ + +       +A  ++ EG++R  P   
Sbjct: 380 IVYCTCSLEAAEGEAQVSAFLERQGGKMELIAVEAGEVGG--LAECVTKEGYLRCLPCHS 437

Query: 421 EKIDGVSSGMDGFFAVALRR 440
             +D VS GMDGFFA  LRR
Sbjct: 438 AAVDPVSKGMDGFFAARLRR 457


>gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1]
 gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1]
          Length = 453

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 120/465 (25%), Positives = 203/465 (43%), Gaps = 39/465 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+ ++AR ++  +   V  +       L+          L   D+     IV   LR L
Sbjct: 1   MKN-VSARELALLVSKAVEDEGAYANLALNKLLEQYQPGKL---DRAFATEIVYGVLRNL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             ID VL   L   L  +   ++ +LR+   QI+++  V D A  + +V  AK+   ++ 
Sbjct: 57  NTIDWVLAHFLKQPLASQTVWIRNILRMGTYQIMFMPRVPDSAACNESVNLAKKY-GHQG 115

Query: 120 FAKLVNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
             K VN +LR V+R++            +  IA     P W  ER    YG E+ +A+  
Sbjct: 116 APKFVNGVLRNVARQQHSLEFPDSKEAPVDHIALKYSHPTWLVERWLMQYGFEQTIALCQ 175

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEG 221
           A   P    +         E    +L A  +     +      ++        L  F  G
Sbjct: 176 ANNRPAPNTVRTNTLKISREDLMARLKAEGVEARETKFVPEGLNLSGFLSYRTLKSFQGG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            + VQD S+ +   +    +   VLD+ +APGGKT  L   +    ++ A D+   +L+ 
Sbjct: 236 FFQVQDESSMLVAHVLNPSSGAKVLDVASAPGGKTTHLAQLMGDSGQIIAFDIYSHKLDL 295

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N  RL + +      DA D   K     D VLVDAPCS  G +RR PD  W +D   
Sbjct: 296 IMDNCRRLGIQSIQAEVADARDLHKKYQGWADYVLVDAPCSGLGVLRRRPDSRWRKDPSQ 355

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +      Q+++L      ++PGG++V+S C++ K+++  VV++ L++ P  + +  L   
Sbjct: 356 LPGIVRLQKEILQSAAQCLRPGGVLVYSTCTITKEENIGVVEEFLKNHPEFI-MGDLRQL 414

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +D   + + +G+I++ P +         GMDGFF   LR+ 
Sbjct: 415 LPPGLDEEKS-AEKGYIQLLPHV--------HGMDGFFIARLRKK 450


>gi|195970119|ref|NP_387430.2| putative sun protein [Sinorhizobium meliloti 1021]
 gi|307302539|ref|ZP_07582296.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C]
 gi|187904238|emb|CAC47903.2| Hypothetical Sun protein [Sinorhizobium meliloti 1021]
 gi|306903209|gb|EFN33799.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C]
          Length = 470

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 217/439 (49%), Positives = 299/439 (68%), Gaps = 5/439 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ +R  ++ +L+ V+ ++  L  +LD E G+ A+R LS+ D+ LVRAI+N  LR LP
Sbjct: 34  KPGLKSRQAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLP 93

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RI A +D +L + LP    +L+ +L V+  QILYLDV D++ VDLAVEQA+ D  NR FA
Sbjct: 94  RIRAAIDSLLQTPLPEGARALEHVLTVAATQILYLDVPDHSAVDLAVEQAQSDPRNRRFA 153

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LRR+SREK E+L+++  +  +P WF +RL   YG ++   IS+A + P  IDLT
Sbjct: 154 SLVNAVLRRLSREKEEILEKLRQVPAMPGWFFDRLVACYGPDQAERISEAQLVPAAIDLT 213

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D  +WA +L   +LPTG +RL+E   SI SL GF+EG WWVQDA+ASIP +LFG ++
Sbjct: 214 VKSDAASWAERLAGTVLPTGSVRLQEFSGSIPSLSGFSEGAWWVQDAAASIPARLFGDIS 273

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V+DLCAAPGGKTAQL+++GA+VTALD S  RL +L+ NL+RL   A    E D  ++
Sbjct: 274 GKKVVDLCAAPGGKTAQLVLAGAEVTALDQSSSRLRRLKANLERLGFEA-RTKESDMAEF 332

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P++LFDA L+DAPCSSTGT RRHPDVLWT+   D+ K A  Q +LL   ++ VKPGG++
Sbjct: 333 RPEELFDAALLDAPCSSTGTTRRHPDVLWTKGPQDVEKLARLQERLLRHALTLVKPGGLI 392

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD  + EEVV +V+       E VP+++A W  ++ A  ++  G  R TP ML 
Sbjct: 393 VFSNCSLDPLEGEEVVARVVA--DSGCERVPIDAADWPGLEKA--ITALGEFRTTPAMLP 448

Query: 422 KIDGVSSGMDGFFAVALRR 440
                + G+DGF+A  LRR
Sbjct: 449 LEPPFAGGLDGFYAAVLRR 467


>gi|150398383|ref|YP_001328850.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150029898|gb|ABR62015.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419]
          Length = 470

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 220/439 (50%), Positives = 303/439 (69%), Gaps = 5/439 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ +R  ++ +L+ V+ ++  L  +LD E G+  +R L+  D+ LVRAI+N  LR LP
Sbjct: 34  KPGLKSRQAAAKILAAVVDRKTPLDGMLDPERGNPVYRELNDADRALVRAILNSALRHLP 93

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RI A +D +L + LP    +L+ +L V+ AQILYLDV D++ VDLAVEQA+ D  NR FA
Sbjct: 94  RIRAAIDSLLQTPLPEGARALEHVLTVAAAQILYLDVPDHSAVDLAVEQAQSDPRNRRFA 153

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LRR+SREK  +L+R+  +  +P WF +RL   YG+++   ISDA + P  ID+T
Sbjct: 154 SLVNAVLRRLSREKEAILERLQQVPAMPGWFFDRLVTCYGRDQAERISDAQLVPAAIDVT 213

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D  +WA +LN  +LPTG +RL++   SI SLPGF+EG WWVQDA+ASIP +LFG ++
Sbjct: 214 VKSDAASWADRLNGTVLPTGSVRLQDFDGSIPSLPGFSEGGWWVQDAAASIPARLFGDIS 273

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V+DLCAAPGGKTAQL+++GAKV ALD S  RL +L+ NL+RL L +    E D  D+
Sbjct: 274 GRKVVDLCAAPGGKTAQLVLAGAKVIALDQSSSRLRRLKANLERLGLESA-TKEADMADF 332

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P++LFDA L+DAPCSSTGT RRHPDVLWT+  DD+ K A  Q +LL   ++ VKPGG++
Sbjct: 333 RPEELFDAALLDAPCSSTGTTRRHPDVLWTKGPDDVEKLAGLQERLLRHALTLVKPGGLL 392

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD ++ EEVV +V+       E VP+++A W  ++ A  ++  G  R TP ML 
Sbjct: 393 VFSNCSLDPREGEEVVARVVA--DGGCERVPIDAAAWPGLEQA--ITALGEFRTTPAMLS 448

Query: 422 KIDGVSSGMDGFFAVALRR 440
                +SG+DGF+A  LRR
Sbjct: 449 LGPPFASGLDGFYAAVLRR 467


>gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574]
          Length = 453

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 197/465 (42%), Gaps = 39/465 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  + AR ++  +L  V  +       L+          L   D+     I    LR L
Sbjct: 1   MKK-VTARDLALQVLKVVEEEGAYANLALNRYLELYQPGKL---DRAFATEITYGVLRNL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             ID VL   L   L  +   ++ +LR+   QI+++  V D A  + +VE AK+   +  
Sbjct: 57  NTIDWVLAHFLKQPLAAQTVWVRNILRMGTYQIMFMPRVPDSAACNESVELAKKY-GHTG 115

Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
            AK VN +LR              +   +  I+     P W  ER    +G ++ +A+  
Sbjct: 116 AAKFVNGVLRNVARQQGELDFPDPQESPIDYISLKYSHPTWLVERWLKEFGFDQTVALCK 175

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEG 221
           A   P    +       +      +L    + T   +       +       SLP F EG
Sbjct: 176 ANNHPAPNTIRTNTLKINRTDLKARLEFEGVETRVTKYAPEGLHLNGFLSYQSLPSFQEG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
           ++ VQD S+ +        +   ++D+ +APGGKT  L   +    ++ A+D+   +LE 
Sbjct: 236 LFQVQDESSMLVAHALNPASGARIIDVASAPGGKTTHLAQLMKDRGEIVAVDIHPHKLEL 295

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           ++ N  RL + +   +  DA     +     D VLVDAPCS  G +RR PD  W +D   
Sbjct: 296 IKENCQRLGINSIRTLLADARCLPAEYTNWADYVLVDAPCSGLGVLRRRPDARWRKDPSQ 355

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +      QR++L    ++++PGG++++S C++ ++++  V++  L   P    L  L   
Sbjct: 356 LPGIVRLQREILESASTYLRPGGVLIYSTCTITREENIGVLEAFLADHP-EFSLGDLRQF 414

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +      +  G+I++ P +         GMDGFF   LR+ 
Sbjct: 415 LPPGL-AEEETAENGFIQLLPHI--------HGMDGFFIARLRKK 450


>gi|227823840|ref|YP_002827813.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
 gi|227342842|gb|ACP27060.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
          Length = 473

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 221/439 (50%), Positives = 299/439 (68%), Gaps = 5/439 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ +R  ++ +L+ V+ +  SL  +LD E+G+ A+R L+  D+ LVRAI+N  LR LP
Sbjct: 34  KPGLKSRQAAAKILAAVIDRNTSLDGMLDQEHGNPAYRELNDADRALVRAILNSALRHLP 93

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RI A +D +L + LP    +L+ +L V+ AQILYLD+ D++ VDLAVEQA+ D  NR FA
Sbjct: 94  RIRAAIDSLLQTPLPEGARALEHVLTVAAAQILYLDIPDHSAVDLAVEQAQSDPRNRRFA 153

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LRR+SREK  +L+ +  +  IP WF ERL   YG+    AIS+A + P  IDLT
Sbjct: 154 SLVNAVLRRLSREKQAILEALQTVPAIPAWFYERLVAHYGRAEAEAISEAQLVPAAIDLT 213

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK +   WA +L   +LPTG +RL +   +I SLPGF+EG WWVQDA+ASIP +LFG L+
Sbjct: 214 VKSEPALWAERLGGTVLPTGSVRLGDFTGTIPSLPGFSEGAWWVQDAAASIPARLFGDLS 273

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             +V+DLCAAPGGKTAQLI++GAKVTALD S  RL +L+ NL+RL L A    E D  ++
Sbjct: 274 GKTVVDLCAAPGGKTAQLILAGAKVTALDQSSSRLRRLKANLERLGLEA-RTKETDMAEF 332

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P +LFDA L+DAPCSSTGT RRHPDVLWT+   D+ K A  Q +LL   ++ V+PGGIV
Sbjct: 333 RPDELFDAALLDAPCSSTGTTRRHPDVLWTKGPGDVEKLARLQERLLRHALTVVRPGGIV 392

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD ++ EEVV +V+       E +P+ ++ W  ++ A  ++  G  R TP ML 
Sbjct: 393 VFSNCSLDPREGEEVVARVVA--DGDCERLPIAASDWPGLEAA--ITALGEFRTTPAMLP 448

Query: 422 KIDGVSSGMDGFFAVALRR 440
                S+G+DGF+A  LRR
Sbjct: 449 LDQPFSAGLDGFYAAVLRR 467


>gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
           thermopropionicum SI]
 gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
           thermopropionicum SI]
          Length = 456

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 110/463 (23%), Positives = 198/463 (42%), Gaps = 38/463 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +G++AR ++  +++ V  +       L+          L   D+     +   TLR L  
Sbjct: 5   TGLSARELALKVVNAVEEEGAYANLALNQVLEKHRPGKL---DRAFATELAYGTLRSLNT 61

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +D VL+  +   L  +  ++  +LR+ V Q++++D V   AV +   E A++   +    
Sbjct: 62  LDWVLEQFIKQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKY-GHAGTV 120

Query: 122 KLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           K VN +LR +SR   E+            I+     P W  +R    +G +  +A+  A 
Sbjct: 121 KFVNGVLRNISRRLNEISFPALEDDPVKHISLRYSHPVWMVKRWLKEFGLDHTVALCRAN 180

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVW 223
             P    +         +  A +L    L              +   SI SL  F EG++
Sbjct: 181 NGPAPNTVRTNTLKITRDGLAERLRNEGLTVSETEFAPEGLKIDGFFSIGSLQSFKEGLF 240

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            +QD S+ +  +         V+D C+APGGKT  L   + +  ++ A+D+   +L  ++
Sbjct: 241 QIQDESSMLAGRALMPAPGAFVIDACSAPGGKTTHLAQLMENRGRILAVDIHPHKLVLIK 300

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
            N  RL +   + +  DA +         D +LVDAPCS  G +RR PD  W ++   + 
Sbjct: 301 ENCSRLGINIVEGLAGDARELPENLYNKADFILVDAPCSGLGVLRRRPDARWRKEPGQLP 360

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                QR++L      +K  G++V+S C++ ++++   V+  L   P    L  L+    
Sbjct: 361 AIIQLQREILEGVARCLKKNGVIVYSTCTITREENLRQVEWFLDKHP-QFVLEDLSPFLP 419

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +D    L   G++++ P           GMDGFF   +R+ 
Sbjct: 420 AGLDFEGTL-KGGFLQVLP--------YRHGMDGFFIARMRKK 453


>gi|307316130|ref|ZP_07595574.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83]
 gi|306897970|gb|EFN28712.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83]
          Length = 470

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 217/439 (49%), Positives = 299/439 (68%), Gaps = 5/439 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ +R  ++ +L+ V+ ++  L  +LD E G+ A+R LS+ D+ LVRAI+N  LR LP
Sbjct: 34  KLGLKSRQAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLP 93

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RI A +D +L + LP    +L+ +L V+  QILYLDV D++ VDLAVEQA+ D  NR FA
Sbjct: 94  RIRAAIDSLLQTPLPEGARALEHVLTVAATQILYLDVPDHSAVDLAVEQAQSDPRNRRFA 153

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LRR+SREK E+L+++  +  +P WF +RL   YG ++   IS+A + P  IDLT
Sbjct: 154 SLVNAVLRRLSREKEEILEKLRQVPAMPGWFFDRLVACYGPDQAERISEAQLVPAAIDLT 213

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D  +WA +L   +LPTG +RL+E   SI SL GF+EG WWVQDA+ASIP +LFG ++
Sbjct: 214 VKSDAASWAERLAGTVLPTGSVRLQEFSGSIPSLSGFSEGAWWVQDAAASIPARLFGDIS 273

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V+DLCAAPGGKTAQL+++GA+VTALD S  RL +L+ NL+RL   A    E D  ++
Sbjct: 274 GKKVVDLCAAPGGKTAQLVLAGAEVTALDQSSSRLRRLKANLERLGFEA-RTKESDMAEF 332

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P++LFDA L+DAPCSSTGT RRHPDVLWT+   D+ K A  Q +LL   ++ VKPGG++
Sbjct: 333 RPEELFDAALLDAPCSSTGTTRRHPDVLWTKGPQDVEKLARLQERLLRHALTLVKPGGLI 392

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD  + EEVV +V+       E VP+++A W  ++ A  ++  G  R TP ML 
Sbjct: 393 VFSNCSLDPLEGEEVVARVVA--DSGCERVPIDAADWPGLEKA--ITALGEFRTTPAMLP 448

Query: 422 KIDGVSSGMDGFFAVALRR 440
                + G+DGF+A  LRR
Sbjct: 449 LEPPFAGGLDGFYAAVLRR 467


>gi|315122151|ref|YP_004062640.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495553|gb|ADR52152.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 443

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 345/442 (78%), Positives = 393/442 (88%), Gaps = 2/442 (0%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKSGMNARLV++HLLSCV RKRISLTCLLD E GD AFR LS +DQ LVRAI++ TLRFL
Sbjct: 1   MKSGMNARLVAAHLLSCVTRKRISLTCLLDPERGDIAFRKLSHKDQALVRAILSTTLRFL 60

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PRIDAVLD +L+SSL +KK SL+QL R+S+AQILYLDVADYAVVDLAVEQAKRD+ENRHF
Sbjct: 61  PRIDAVLDLLLVSSLSKKKQSLRQLFRISIAQILYLDVADYAVVDLAVEQAKRDQENRHF 120

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           + LVNSILRRVSREK ELLQR + IS+IP+WFK+RLE+FYGKE    IS AC++P Y+DL
Sbjct: 121 SNLVNSILRRVSREKTELLQRFSSISVIPQWFKKRLEDFYGKESTYCISQACLTPSYVDL 180

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK DIE WA+KLNAV+LPTGGIRL+E   S+ SLPGFAEGVWWVQDASASIPVQLFG L
Sbjct: 181 TVKSDIEIWANKLNAVVLPTGGIRLREFRGSVSSLPGFAEGVWWVQDASASIPVQLFGPL 240

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           N LSVLDLCAAPGGKTAQLI+SGAKVTALD+S  RLEKL+ NL+RL L A++IIE DAFD
Sbjct: 241 NGLSVLDLCAAPGGKTAQLILSGAKVTALDISNNRLEKLQHNLNRLRLCADNIIEGDAFD 300

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           Y PKKLFDAVLVDAPCSSTGT+RRHPDVLWTRD +DIV+SACFQ +LLL G++ VKPGGI
Sbjct: 301 YRPKKLFDAVLVDAPCSSTGTMRRHPDVLWTRDAEDIVRSACFQERLLLHGLALVKPGGI 360

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           VVFSNCSLDKQDSE+VV+KVLRSS IPVE++ LN+A W   +MAMA++PEGW+RITPDML
Sbjct: 361 VVFSNCSLDKQDSEDVVRKVLRSSLIPVEIMSLNNASW--NNMAMAITPEGWLRITPDML 418

Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
            +I+GV SGMDGFFAVALRRLI
Sbjct: 419 GEIEGVPSGMDGFFAVALRRLI 440


>gi|332976420|gb|EGK13268.1| RNA methyltransferase Sun [Desmospora sp. 8437]
          Length = 453

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 200/464 (43%), Gaps = 37/464 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    +AR V+  +L  V  +      LL+     S    LS RD+ L   +V  TL+  
Sbjct: 1   MTRPDSARNVALDVLIAVEERGAYSNLLLNDRLQRS---SLSPRDRGLATELVYGTLQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L+ ++   +      ++ LLR+ + Q+ YLD V   A V   VE AK  + +R 
Sbjct: 58  NTLDWILNKLVRKGIDTLDPWVRHLLRLGIYQLRYLDRVPSRAAVHETVEIAKA-RGHRG 116

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISI--------IPEWFKERLENFYGKERVLAISDA 171
              LVN +LR   R   E     +  S+         PEW   RL   YG E   ++  A
Sbjct: 117 IPGLVNGVLRSYLRRGREWTLPDSPKSVTDLALVTSHPEWLVRRLVEVYGPETAHSVLKA 176

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEG 221
              P  + + V     + E  A  L          + P  G  L     +  S   F EG
Sbjct: 177 NNRPPGLSVRVNPLRGNRERVARLLQEEDPRLRIRLSPLSGQGLILTGGNPASGRLFREG 236

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278
            + VQD S+ +  +L        VLD CAAPGGKT      + +   + A D+   +++ 
Sbjct: 237 WFTVQDESSMLVAELLAPRPGERVLDGCAAPGGKTGHLAERMENRGTLLACDIHPHKVKL 296

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +   + RL L   ++ + D  +     +  FD VL+DAPCS  G IRR PD+ W+++  +
Sbjct: 297 IENQVRRLGLSMVEVRQADLRELPGTGEARFDRVLLDAPCSGWGVIRRKPDIKWSKNLQE 356

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +      Q +LL      V PGG +V+S C+L+ Q++ E +   L+  P   +       
Sbjct: 357 VDSLRQLQAELLEAAARLVTPGGTLVYSTCTLEPQENREQITAFLKKHPT-FQADSTLFD 415

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +     AL+ +GW++I P   E         DGFF   + +
Sbjct: 416 TLPAPVREKALTGDGWVQILPHHFES--------DGFFIARMIK 451


>gi|116254448|ref|YP_770286.1| ribosomal RNA small subunit methyltransferase B [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115259096|emb|CAK10207.1| putative ribosomal RNA small subunit methyltransferase B [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 460

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 226/424 (53%), Positives = 290/424 (68%), Gaps = 4/424 (0%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +++ L   LD E+G+ A+R L + D+ LVRAI+N TLR LPRIDA +  +L S LP 
Sbjct: 40  VVDRKLPLDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLPRIDAAIAGLLDSPLPE 99

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L +  AQILYLDV D++ VDLAVEQA +D  NR FAKLVN+ILRR+ REK +
Sbjct: 100 GARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAILRRLGREKEQ 159

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197
           +L  I  ++ +P WF  RLE  YG++  LAIS++ + P  IDLTVK D E WA +LN V+
Sbjct: 160 VLADIGKVAPMPAWFIARLEKAYGRDAALAISESQLEPAAIDLTVKSDPEGWAKRLNGVV 219

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
           LPTGGIRL      I SL GF EG WWVQDA+ASIP +LFG L      DLCAAPGGKTA
Sbjct: 220 LPTGGIRLAAFDGGIPSLEGFDEGAWWVQDAAASIPAKLFGDLAGKRTADLCAAPGGKTA 279

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           QLI++G  VTALD S+ RL +LR NLDRL L AE I   D   + P + FDA+L+DAPCS
Sbjct: 280 QLILAGGAVTALDQSENRLRRLRSNLDRLGLKAETI-AADLTTFGPTERFDAILLDAPCS 338

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           STGT RRHPDVLWT+  +DI + A  Q +LL   ++ +KPGG +VFSNCSLD  + E+VV
Sbjct: 339 STGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPGGTLVFSNCSLDPVEGEDVV 398

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
            +VL  +   VE VP+ +  W  ++ A  ++P G  R  P ML+  DG+ SG+DGF+A  
Sbjct: 399 ARVLSDT-DAVERVPIGAGDWPGLEAA--ITPLGEFRTLPTMLKMPDGIGSGLDGFYAAV 455

Query: 438 LRRL 441
           LRRL
Sbjct: 456 LRRL 459


>gi|254700459|ref|ZP_05162287.1| Sun [Brucella suis bv. 5 str. 513]
 gi|261750960|ref|ZP_05994669.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261740713|gb|EEY28639.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513]
          Length = 465

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 194/445 (43%), Positives = 263/445 (59%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++VVDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSVVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K     P    L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465


>gi|241206925|ref|YP_002978021.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860815|gb|ACS58482.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 460

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 222/425 (52%), Positives = 292/425 (68%), Gaps = 4/425 (0%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +++ L   LD E+G+ A+R L + D+ LVRAI+N TLR LPRIDA +  +L S LP 
Sbjct: 40  VVDRKLPLDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLPRIDAAIAGLLDSPLPE 99

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L +  AQILYLDV D++ VDLAVEQA  D  NR FAKLVN+ILRR+ REK +
Sbjct: 100 GARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANLDPRNRRFAKLVNAILRRLGREKEQ 159

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197
           +L +I  ++ +P WF  RLE  YG++  LAIS++ + P  IDLTVK D E WA +LN V+
Sbjct: 160 VLDQIGKVAPMPAWFIARLEKAYGRDAALAISESQLEPAAIDLTVKSDPEDWAKRLNGVV 219

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
           LPTG +RL     SI S+ GF EG WWVQDA+ASIP +LFG L      DLCAAPGGKTA
Sbjct: 220 LPTGSVRLAAFDGSIPSVEGFDEGAWWVQDAAASIPAKLFGDLLGKRTADLCAAPGGKTA 279

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           QLI++G  VTALD S+ RL +LR NLDRL L AE I   D   + P + FDA+L+DAPCS
Sbjct: 280 QLILAGGAVTALDQSESRLRRLRSNLDRLGLKAETI-AADLTTFEPAERFDAILLDAPCS 338

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           STGT RRHPDVLWT+  +DI + A  Q +LL   ++ +KPGG +VFSNCSLD  + E+VV
Sbjct: 339 STGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPGGTLVFSNCSLDPVEGEDVV 398

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
            +VL  +   VE VP+ ++ W  ++ A  ++P G  R  P ML+  +G++SG+DGF+A  
Sbjct: 399 ARVLSDT-DAVERVPIGASDWPGLEAA--ITPLGEFRTLPTMLKMPEGIASGLDGFYAAV 455

Query: 438 LRRLI 442
           LRR+ 
Sbjct: 456 LRRVA 460


>gi|62290679|ref|YP_222472.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700594|ref|YP_415168.1| hypothetical protein BAB1_1822 [Brucella melitensis biovar Abortus
           2308]
 gi|148559652|ref|YP_001259653.1| sun protein [Brucella ovis ATCC 25840]
 gi|189024891|ref|YP_001935659.1| Sun [Brucella abortus S19]
 gi|237816180|ref|ZP_04595175.1| Sun, sun protein [Brucella abortus str. 2308 A]
 gi|254689968|ref|ZP_05153222.1| Sun [Brucella abortus bv. 6 str. 870]
 gi|254698119|ref|ZP_05159947.1| Sun [Brucella abortus bv. 2 str. 86/8/59]
 gi|254708333|ref|ZP_05170161.1| Sun [Brucella pinnipedialis M163/99/10]
 gi|254708815|ref|ZP_05170626.1| Sun [Brucella pinnipedialis B2/94]
 gi|254731003|ref|ZP_05189581.1| Sun [Brucella abortus bv. 4 str. 292]
 gi|256030341|ref|ZP_05443955.1| Sun [Brucella pinnipedialis M292/94/1]
 gi|256061838|ref|ZP_05451973.1| Sun [Brucella neotomae 5K33]
 gi|256258223|ref|ZP_05463759.1| Sun [Brucella abortus bv. 9 str. C68]
 gi|256370218|ref|YP_003107729.1| sun protein [Brucella microti CCM 4915]
 gi|260547084|ref|ZP_05822822.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260755503|ref|ZP_05867851.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260758726|ref|ZP_05871074.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260762560|ref|ZP_05874897.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884524|ref|ZP_05896138.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|261315833|ref|ZP_05955030.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|261316307|ref|ZP_05955504.1| fmu domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261325843|ref|ZP_05965040.1| fmu domain-containing protein [Brucella neotomae 5K33]
 gi|265987375|ref|ZP_06099932.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|294851054|ref|ZP_06791730.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL
           07-0026]
 gi|297249071|ref|ZP_06932779.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus
           bv. 5 str. B3196]
 gi|62196811|gb|AAX75111.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616695|emb|CAJ11778.1| SAM (and some other nucleotide) binding motif:Bacterial
           Sun/eukaryotic nucleolar Nop1/Nop2:Antitermination
           protein NusB:NusB [Brucella melitensis biovar Abortus
           2308]
 gi|148370909|gb|ABQ60888.1| sun protein [Brucella ovis ATCC 25840]
 gi|189020463|gb|ACD73185.1| Sun [Brucella abortus S19]
 gi|237788642|gb|EEP62855.1| Sun, sun protein [Brucella abortus str. 2308 A]
 gi|256000381|gb|ACU48780.1| sun protein [Brucella microti CCM 4915]
 gi|260095449|gb|EEW79327.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669044|gb|EEX55984.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260672986|gb|EEX59807.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675611|gb|EEX62432.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260874052|gb|EEX81121.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|261295530|gb|EEX99026.1| fmu domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261301823|gb|EEY05320.1| fmu domain-containing protein [Brucella neotomae 5K33]
 gi|261304859|gb|EEY08356.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|264659572|gb|EEZ29833.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|294821697|gb|EFG38693.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL
           07-0026]
 gi|297174204|gb|EFH33561.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus
           bv. 5 str. B3196]
          Length = 465

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 193/445 (43%), Positives = 262/445 (58%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K     P    L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465


>gi|256160512|ref|ZP_05458201.1| Sun [Brucella ceti M490/95/1]
 gi|256255718|ref|ZP_05461254.1| Sun [Brucella ceti B1/94]
 gi|261222929|ref|ZP_05937210.1| fmu domain-containing protein [Brucella ceti B1/94]
 gi|265998888|ref|ZP_06111445.1| fmu domain-containing protein [Brucella ceti M490/95/1]
 gi|260921513|gb|EEX88166.1| fmu domain-containing protein [Brucella ceti B1/94]
 gi|262553577|gb|EEZ09346.1| fmu domain-containing protein [Brucella ceti M490/95/1]
          Length = 465

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 193/445 (43%), Positives = 262/445 (58%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDITKLAELQGKLLAHAATLVKPGGV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K     P    L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465


>gi|307943521|ref|ZP_07658865.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp.
           TrichSKD4]
 gi|307773151|gb|EFO32368.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp.
           TrichSKD4]
          Length = 462

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 174/440 (39%), Positives = 256/440 (58%), Gaps = 6/440 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G  AR V++ +L  V+ K   L   L+L+ G S FR L  +D+ LVRAI+   LR   
Sbjct: 27  KPGFAARKVAADILGNVVHKHRPLDGELELKSGHSGFRALEPKDRALVRAILGAALRHRG 86

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I  +L  +L   +P K   +  +L V++AQ+LYLD+ D A V LAV+ A  D  +R + 
Sbjct: 87  EISEILTRLLDRDIPEKTGRVLDILHVAIAQMLYLDIPDRAAVSLAVDHASADSRSRVYK 146

Query: 122 KLVNSILRRVSREKIELLQRIA-GISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN +LRR+ RE+  + + +   +   PEW   R    YG+E    I+ A      +D+
Sbjct: 147 GLVNGVLRRLGRERDMMTEDLDGEVLNTPEWLFTRWVETYGEETARKIAAAHQHEAALDI 206

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +VK + + WA +L  V+L    IRL     ++  L GF EG WWVQD +AS+P +L G +
Sbjct: 207 SVKSNPKVWAERLEGVLLAGKTIRLSR-KGAVDGLVGFEEGAWWVQDLAASLPARLLGDV 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +  +V DLCAAPGGKTAQL  S  KVTA+D+SK RL++L  N+DRL L   + +  D   
Sbjct: 266 SGQTVADLCAAPGGKTAQLAASSGKVTAVDISKGRLKRLSQNMDRLGLP-VETVVADLRK 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           Y P +LFDA+L+D PCS+TGTIRRHPDV W +   DI   A  Q++LL +   ++KPGG 
Sbjct: 325 YDPPELFDAILLDVPCSATGTIRRHPDVPWLKGERDIETLAEIQKELLERVAGWLKPGGQ 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CS+++ + E  ++  L++  +   LVP+         +   +SPEG++R  P   
Sbjct: 385 MVYCTCSMERDEGEAQIEAFLKAH-LDFRLVPVAGDEIGG--LNACISPEGYVRTLPFHS 441

Query: 421 EKIDGVSSGMDGFFAVALRR 440
              +   +G+DGFFA  L+R
Sbjct: 442 VDPNSELTGLDGFFAARLQR 461


>gi|23502667|ref|NP_698794.1| sun protein [Brucella suis 1330]
 gi|161619734|ref|YP_001593621.1| Fmu (Sun) domain-containing protein [Brucella canis ATCC 23365]
 gi|163845392|ref|YP_001623047.1| hypothetical protein BSUIS_B1292 [Brucella suis ATCC 23445]
 gi|254703581|ref|ZP_05165409.1| hypothetical protein Bsuib36_06589 [Brucella suis bv. 3 str. 686]
 gi|260568886|ref|ZP_05839354.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261754214|ref|ZP_05997923.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|23348676|gb|AAN30709.1| sun protein [Brucella suis 1330]
 gi|161336545|gb|ABX62850.1| Fmu (Sun) domain protein [Brucella canis ATCC 23365]
 gi|163676115|gb|ABY40225.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|260154270|gb|EEW89352.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261743967|gb|EEY31893.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686]
          Length = 465

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 192/445 (43%), Positives = 261/445 (58%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LR     ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRHLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K     P    L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465


>gi|254719803|ref|ZP_05181614.1| Sun [Brucella sp. 83/13]
 gi|265984821|ref|ZP_06097556.1| fmu domain-containing protein [Brucella sp. 83/13]
 gi|306839499|ref|ZP_07472307.1| Sun [Brucella sp. NF 2653]
 gi|264663413|gb|EEZ33674.1| fmu domain-containing protein [Brucella sp. 83/13]
 gi|306405444|gb|EFM61715.1| Sun [Brucella sp. NF 2653]
          Length = 464

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 192/445 (43%), Positives = 263/445 (59%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 25  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 84

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 85  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 144

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 145 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGVEKAATILAIHAYEPPIDF 204

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 205 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 264

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 265 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 323

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 324 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 383

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K   +    + L P          +   ++ EG++R TP  L
Sbjct: 384 IVFSNCSLHPLEGEEMARKAAEN----LLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 439

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 440 PPDRFDGNPHMAGMDGFFAARFKRV 464


>gi|325294195|ref|YP_004280059.1| SUN protein [Agrobacterium sp. H13-3]
 gi|325062048|gb|ADY65739.1| SUN protein [Agrobacterium sp. H13-3]
          Length = 461

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 223/440 (50%), Positives = 294/440 (66%), Gaps = 11/440 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR+ ++ +L+ V+ K+ SL  +LD E G+  +R LS  D+ LVRAIVN  LR LP
Sbjct: 33  KPGLAARVAATRILAAVLEKKTSLDGMLDSENGNPVYRALSLADRALVRAIVNSALRHLP 92

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RI+A L  +L   LP+   SL  +L V  AQ+L+LDV D++ VDLAVEQA RD  NR FA
Sbjct: 93  RIEAALSMLLDGPLPQGARSLHHVLVVGAAQVLHLDVPDHSAVDLAVEQAHRDPRNRRFA 152

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           KLVN++LRR+ REK E+ + IA + ++P+WF  RL + YG E    IS+A ++P  IDLT
Sbjct: 153 KLVNAVLRRLGREKAEIEKAIADVPVLPDWFYARLVSAYGDEVAKRISEAQLTPSSIDLT 212

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA KL   +LP G +RL E    I SL GFAEG WWVQD +AS+PV+L G ++
Sbjct: 213 VKKDQAVWAEKLGGTVLPNGSVRLGEFEGQIPSLEGFAEGAWWVQDLAASMPVKLMGDIS 272

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V DLCAAPGGKTAQL ++GAKVTALD S  RL +LR NLDRL L+AE + E +   Y
Sbjct: 273 GKRVADLCAAPGGKTAQLALAGAKVTALDQSGNRLRRLRENLDRLGLHAETV-EANMLKY 331

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P++LFDAVL+DAPCSSTGT+R+HPDV WT+D +DI K A  Q ++L   ++ V  GGIV
Sbjct: 332 QPEQLFDAVLLDAPCSSTGTLRKHPDVCWTKDENDIAKLAALQGQMLRHALTLVGAGGIV 391

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD  + E ++ +VL  +P   E V +    W  ++ A  ++ EG +R TPDM  
Sbjct: 392 VFSNCSLDPSEGEAMIAQVLAENP-DFERVAVRKDDWPGMEAA--VTAEGDLRTTPDMF- 447

Query: 422 KIDGVSSGMDGFFAVALRRL 441
                  G+DGFF+  LR+ 
Sbjct: 448 ------GGIDGFFSSVLRKK 461


>gi|260168015|ref|ZP_05754826.1| sun protein [Brucella sp. F5/99]
 gi|261757460|ref|ZP_06001169.1| RNA methyltransferase- sun protein [Brucella sp. F5/99]
 gi|261737444|gb|EEY25440.1| RNA methyltransferase- sun protein [Brucella sp. F5/99]
          Length = 465

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 193/445 (43%), Positives = 262/445 (58%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGFALRNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K     P    L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465


>gi|254714655|ref|ZP_05176466.1| Sun [Brucella ceti M644/93/1]
 gi|254717553|ref|ZP_05179364.1| Sun [Brucella ceti M13/05/1]
 gi|261219386|ref|ZP_05933667.1| fmu domain-containing protein [Brucella ceti M13/05/1]
 gi|261322448|ref|ZP_05961645.1| fmu domain-containing protein [Brucella ceti M644/93/1]
 gi|260924475|gb|EEX91043.1| fmu domain-containing protein [Brucella ceti M13/05/1]
 gi|261295138|gb|EEX98634.1| fmu domain-containing protein [Brucella ceti M644/93/1]
          Length = 465

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 191/445 (42%), Positives = 260/445 (58%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAE  WWVQD +AS+P +L G +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAESEWWVQDVAASLPARLMGDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ R ++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRRKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K     P    L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465


>gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 452

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 200/461 (43%), Gaps = 38/461 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +NAR ++  +L  V ++       L+       F  L   D+     +V  TLR L  +D
Sbjct: 4   VNAREMALIVLKAVDQEGAYANIALNQVLEQRDFNKL---DRAFTTELVYGTLRALNTVD 60

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            VL   L   L  +   ++ +LR+   Q+L++  V   A  + A + + +   ++   K 
Sbjct: 61  WVLAQFLKHPLSSQTAWIRNILRLGTYQLLFMHRVPASAACNEAAKLSHKY-GHKGQVKF 119

Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR ++R+   +            I+     P W  ER  N +GKE+ + I  +  +
Sbjct: 120 VNGVLRNIARQHENIEYPDCEKDPVSHISLRYSHPIWMVERWLNQFGKEKTIRICQSNNT 179

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWV 225
           P    +       + +  A  L    +                  S+ + P F  G++ V
Sbjct: 180 PARFSIRTNTLQINRDNLAELLKQQGMIVDKTGFAPEGLNVEGFTSLRNFPAFRNGLFQV 239

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282
           QD S+ +         N  V+D CAAPGGKT     L+ +  ++ A D+   +L+ +  N
Sbjct: 240 QDESSILAGHAVKPAVNCRVIDACAAPGGKTTHLAQLMENKGEIIAADIYPHKLDLIEDN 299

Query: 283 LDRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
             RL +    II +D+           D VLVDAPCS  G +RR PD  W ++ + I   
Sbjct: 300 CQRLGIKCVKIINLDSRTLHNSYTGWADYVLVDAPCSGLGVLRRRPDARWRKEAEQIPAL 359

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QR++L      V+PGG++V+S C++ ++++ E V+  L +  +   L  ++      
Sbjct: 360 VKIQREILESAALCVRPGGVLVYSTCTITEEENIEQVKYFLLTH-LDFVLEDMSRLLPSE 418

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ID    L   G+I+I P         +  +DGFF   +R+ 
Sbjct: 419 IDWQNTLGK-GYIQILP--------YTHNIDGFFIARMRKK 450


>gi|172035456|ref|YP_001801957.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
           51142]
 gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 452

 Score =  299 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 210/464 (45%), Gaps = 42/464 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
               NAR ++  +L  + RK       LD  +  +    L+  D+ L   +V   +R   
Sbjct: 5   TKKTNARQLTLDILRQIDRKNSYTDIALDRAFNQTH---LNPSDRSLCTELVYGIIRHQR 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D ++D +      ++   L+++L + + Q+ YLD +   A V+ +V  AK  K NR  
Sbjct: 62  TLDTLIDQLGKKKAKQQPPDLRRILHIGLYQLRYLDNIPPSAAVNTSVNLAKEYKLNR-L 120

Query: 121 AKLVNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           + +VN ILR+  R               +++IA     P+W  E     +G+     +  
Sbjct: 121 SGVVNGILRQYLRSSETDGDPLILPPNPIEKIAIQYSFPDWMIETWVQQWGEATTEQLCH 180

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAE 220
                  ID+ +      +ET   +L    +           +RL+    SI +LPGF +
Sbjct: 181 WFNQTPTIDIRINPLKTTLETLQTQLTEAGINATPFPPLPCTLRLQGKIGSIQTLPGFHQ 240

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G W +QD+SA +   L       +++D CAAPGGKT  +   +     + A D +  RL+
Sbjct: 241 GHWTIQDSSAQLVSYLLDPQPGETIIDACAAPGGKTTHMAELMGDQGTIIACDRTPSRLK 300

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           K++ N  RL L +   I  D+          D VLVD PCS  GT+ RHPD+ W +  + 
Sbjct: 301 KVQQNAQRLQLNSIQTILGDSRHLPQLINTADRVLVDVPCSGLGTLHRHPDIRWRQTPEK 360

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           I + +  Q+++L Q   +VKP G +V++ C+L+  +++++++  L   P    L P +  
Sbjct: 361 IQELSRLQQEILTQAAQWVKPQGTLVYATCTLNPTENQQIIESFLTHHPQW-NLKPPSVH 419

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +      +  ++   WI+I P             DGFF V L++
Sbjct: 420 WL----FSPFMTSSKWIQILPH--------EHHTDGFFMVKLKK 451


>gi|328541770|ref|YP_004301879.1| ribosomal RNA small subunit methyltransferase B [polymorphum gilvum
           SL003B-26A1]
 gi|326411522|gb|ADZ68585.1| Ribosomal RNA small subunit methyltransferase B [Polymorphum gilvum
           SL003B-26A1]
          Length = 439

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 178/441 (40%), Positives = 254/441 (57%), Gaps = 6/441 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G   R  ++ +L  V+  R  L   LD   G S FR L  +D+ LVRAI+   LR   
Sbjct: 4   TPGFAVRKAAADILGAVVHARRPLDGELDPVSGHSGFRALDSKDRALVRAILGACLRRRG 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RI A++D +L   +P K   +  +L V+ AQ+L+LDV D A V +AV+ A  D+  R + 
Sbjct: 64  RIAAIVDALLDRPIPEKTGRVLDILHVAAAQVLFLDVPDRAAVSVAVDLAAADRRARPYK 123

Query: 122 KLVNSILRRVSREKIELLQRIAGISII-PEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN +LRR+SREK  LL   + +    P+W  +R    +G+   +AI+ A  +   +DL
Sbjct: 124 GLVNGVLRRLSREKDALLADFSDVRGTPPDWLFDRWTAAWGEATAVAIAHALANEPELDL 183

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D E WA +L   ++ TG +RL     ++ +  G+ EG WWVQDA+A++P +L G L
Sbjct: 184 TVKSDPELWAQRLGGRVVATGSVRLSR-KGAVETFEGYGEGAWWVQDAAAALPARLLGPL 242

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL  +G +VTA+D+S +RL+++  NL RL   A DI+  D  D
Sbjct: 243 AGKRVADLCAAPGGKTAQLAAAGGRVTAVDISGKRLKRVAENLARLGFEA-DIVAADLKD 301

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P + FDA+L+DAPCS+TGTIRRHPDV WT+ + DI   A  Q  LL +   ++ PGG 
Sbjct: 302 WQPAERFDAILLDAPCSATGTIRRHPDVAWTKRSQDIATLAGVQALLLRRAAGWLVPGGT 361

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL+ ++ E  +   L   P    LVP+         +A  ++ EG +R  P  L
Sbjct: 362 LVYCTCSLELEEGEAQIAAFLAEVPG-FALVPVAPGEIGG--LAECVTDEGCLRTLPCHL 418

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
              +    G+DGFFA  L RL
Sbjct: 419 GGAEAADGGLDGFFAARLTRL 439


>gi|306841594|ref|ZP_07474291.1| Sun [Brucella sp. BO2]
 gi|306288340|gb|EFM59703.1| Sun [Brucella sp. BO2]
          Length = 464

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 192/445 (43%), Positives = 264/445 (59%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 25  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 84

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 85  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 144

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 145 GLVNALLRRLARNKERALAHTFEPEANVPEWFSKSITDAYGAEKAATILAMHAYEPPIDF 204

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 205 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 264

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 265 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 323

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q +LL    + VKPGG+
Sbjct: 324 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLADLQGRLLAHAATLVKPGGV 383

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K    +P+   L P          +   ++ EG++R TP  L
Sbjct: 384 IVFSNCSLHPLEGEEMARKA-AENPL---LEPFPITEQDCPGLEGLVTAEGFLRSTPADL 439

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 440 PPDRFDGNPHMAGMDGFFAARFKRV 464


>gi|27375690|ref|NP_767219.1| SUN protein [Bradyrhizobium japonicum USDA 110]
 gi|27348828|dbj|BAC45844.1| SUN protein [Bradyrhizobium japonicum USDA 110]
          Length = 448

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 174/439 (39%), Positives = 256/439 (58%), Gaps = 5/439 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ ++  V+ K  +L   LD        + L+ RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADIVDGVLHKHRTLDDQLDGSGAHPGLKTLADRDRALMRRLVATVLRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  VL  +L   +P +    Q  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LGHVLSRLLDKGIPSEAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAARYAG 132

Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE   L++ +A  S  +P W   R    YG+     ++ A      +DLT
Sbjct: 133 LVNAVLRRCAREGQALVEEVATQSLDLPPWLLARWRAHYGEATARDMALALGHEPSLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D E WA +L+   LPTG +R   L  S+  LPGFAEG WWVQDA+A++P +LFG + 
Sbjct: 193 VKSDAEQWASRLHGETLPTGTVR-MLLHGSVTMLPGFAEGQWWVQDAAAALPARLFGDIK 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             S+ DLCAAPGGKTAQL  +GA VTA+D S  R+ +LR NL RL L AE ++   A   
Sbjct: 252 GKSIADLCAAPGGKTAQLAHAGAHVTAIDRSPARVARLRENLARLSLQAETVVADAAEWA 311

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P + FD +L+DAPC+STGTIRRHPDV W R   DI      Q++LL + +S +KPGG +
Sbjct: 312 GPAEGFDGILIDAPCTSTGTIRRHPDVAWLRQESDIAALTALQQRLLRKSVSLLKPGGTL 371

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL+ ++ E+ +  +L + P  +  VP+ ++  +   ++  ++ EG +R  P  L 
Sbjct: 372 VYCTCSLEPEEGEQAIATLLAAEP-ALRRVPIEAS--EVSGLSEIITAEGDLRTLPSHLP 428

Query: 422 KIDGVSSGMDGFFAVALRR 440
             D    G+DGFFA  L +
Sbjct: 429 NADPKLGGLDGFFAARLVK 447


>gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 506

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 200/459 (43%), Gaps = 36/459 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +L+ V ++      LL+     S    L+  D  L   +V  T++ L  ID  
Sbjct: 55  ARSVALQVLTAVEQEGAYSNLLLNGALQKS---GLTGPDAGLATELVYGTIQRLNTIDYF 111

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L+  +   L +    ++ LLR+S  Q+ YLD +  +A V+ AV  AKR K ++  + +VN
Sbjct: 112 LEQFVTKGLAKLAPWVRNLLRLSFYQLQYLDRIPPHAAVNEAVNLAKR-KGHQGISGMVN 170

Query: 126 SILRRVSREKI--------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +LR V R K         + +QRIA     PEW        YG+    AI  A   P  
Sbjct: 171 GVLRNVLRRKEELRLPEGLDPVQRIALEHSHPEWMVALWIQQYGESAAEAICRANNEPPS 230

Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V     +    L          +    +    +     ++     + EG+  VQD 
Sbjct: 231 VSVRVNRTKASRDEVLRLMEEQGLRASASPISPDGIVVHSGGNMALTSWYREGLISVQDE 290

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +       ++VLD CAAPGGKT  +   +    +V A D+   + + +  +  R
Sbjct: 291 SSMLVAEALDPQPGMNVLDCCAAPGGKTCHIAEIMEGRGRVLANDIHPHKAKLIEDHAKR 350

Query: 286 LHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L   D +  DA     +     FD +L+D PCS  G IRR PD+ W +  +D+ + A 
Sbjct: 351 LGLDNVDTLSGDALQLAERLKAASFDRILLDVPCSGLGVIRRKPDLKWAKKPEDVTEIAG 410

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR LL      +KPGG++V+S C+++ +++ E+V   L   P         S   +   
Sbjct: 411 VQRTLLDSVSGLLKPGGLLVYSTCTIEPRENAEMVASFLSRHPEFELADEPISWKERGAL 470

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            A A   E  ++I P             DGF+   LRR 
Sbjct: 471 AAAAGRVEAGLQILPQDA--------HSDGFYIARLRRK 501


>gi|225853258|ref|YP_002733491.1| Fmu domain-containing protein, Sun [Brucella melitensis ATCC 23457]
 gi|256114379|ref|ZP_05455112.1| Fmu domain protein, Sun [Brucella melitensis bv. 3 str. Ether]
 gi|256263253|ref|ZP_05465785.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|265995679|ref|ZP_06108236.1| fmu domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|225641623|gb|ACO01537.1| Fmu domain protein, Sun [Brucella melitensis ATCC 23457]
 gi|262766963|gb|EEZ12581.1| fmu domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263093217|gb|EEZ17314.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326409818|gb|ADZ66883.1| Fmu domain-containing protein, Sun [Brucella melitensis M28]
 gi|326539536|gb|ADZ87751.1| Fmu domain protein, Sun [Brucella melitensis M5-90]
          Length = 465

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 191/445 (42%), Positives = 260/445 (58%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   L    
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALHNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L   +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMDDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K     P    L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465


>gi|159185402|ref|NP_355752.2| Sun protein [Agrobacterium tumefaciens str. C58]
 gi|159140651|gb|AAK88537.2| Sun protein [Agrobacterium tumefaciens str. C58]
          Length = 461

 Score =  296 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 220/440 (50%), Positives = 294/440 (66%), Gaps = 11/440 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR+ ++ +L+ V+ K+ S+  +LD E G+  +R LS  D+ LVRA+VN  LR LP
Sbjct: 33  KPGLAARIAATRILAAVLEKKTSMDGMLDSENGNPVYRALSLADRALVRAVVNSALRHLP 92

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RI+  L  +L   LP+   SL  +L V  AQ+LYLDV D++ VDLAVEQA RD  NR F 
Sbjct: 93  RIETALSMLLDGPLPQGARSLHHVLVVGAAQMLYLDVPDHSAVDLAVEQAHRDPRNRRFV 152

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           KLVN++LRR+ REK E+ + IA + ++PEWF  RL + YG E    IS A ++P  IDLT
Sbjct: 153 KLVNAVLRRLGREKAEIEKAIADVPVLPEWFYARLVSAYGDEVAQRISQAQLTPSCIDLT 212

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA +L   ++P G +RL E    I SL GFAEG WWVQD +AS+PV+L G ++
Sbjct: 213 VKADPALWAERLGGTLMPNGSVRLGEFEGQIPSLDGFAEGAWWVQDLAASMPVRLLGDIS 272

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V DLCAAPGGKTAQL ++GA+VTALD S  RL +LR NLDRL L+AE + E +   Y
Sbjct: 273 GKRVADLCAAPGGKTAQLALAGARVTALDQSGNRLRRLRENLDRLGLHAETV-EANMLKY 331

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P++LFDAVL+DAPCSSTGT+R+HPDV WT+D +DI K A  Q ++L   ++ V PGG+V
Sbjct: 332 QPEQLFDAVLLDAPCSSTGTLRKHPDVCWTKDENDIAKLAALQGQMLRHALTLVGPGGLV 391

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD  + EE++ +VL  +P  VE V ++   W  ++ A  +S  G +R TPDM  
Sbjct: 392 VFSNCSLDPSEGEEMIAEVLAENP-DVERVAVHREDWPGMEAA--ISAAGDLRTTPDMF- 447

Query: 422 KIDGVSSGMDGFFAVALRRL 441
                  G+DGFF+  LR+ 
Sbjct: 448 ------GGVDGFFSSVLRKK 461


>gi|154243996|ref|YP_001414954.1| sun protein [Xanthobacter autotrophicus Py2]
 gi|154158081|gb|ABS65297.1| sun protein [Xanthobacter autotrophicus Py2]
          Length = 471

 Score =  296 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 165/442 (37%), Positives = 252/442 (57%), Gaps = 13/442 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+ AR+++   L  V+R   +L   LD +        L  RD+ L   I+  +LR + 
Sbjct: 42  TPGLAARILAVDGLEQVLRHGAALEDALDADVA------LDPRDRALAYRILATSLRRIG 95

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + A++  ++   LP+    L+ +L     QIL++DV ++A V L V+ A+ D+    FA
Sbjct: 96  TLRALIAKLMERGLPKSAPRLESVLLAGATQILFMDVPNHAAVGLCVDVARADRNTAGFA 155

Query: 122 KLVNSILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR++RE   L+  I+   +  PEW  +R    YG E   AI+        +D+
Sbjct: 156 GLVNAVLRRLTREADALMVGISPDFADTPEWMGQRWIKAYGLETTRAIAAMHKVEPPLDI 215

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D   WA +L+  +LPTG +R+ +    + +LPGFAEG WWVQDA+A++P +L G +
Sbjct: 216 TVKADPALWAERLSGEVLPTGSVRILQA-GPVRALPGFAEGDWWVQDAAAALPARLLGDV 274

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
             L V DLCAAPGGKTAQL  +GA VTA+D S  RL +L+ NL+RL L A+ +       
Sbjct: 275 KGLKVADLCAAPGGKTAQLAAAGAIVTAVDRSSSRLTRLKENLERLKLSAQVV--AGDAA 332

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FDAVL+DAPCS+TGT+RRHPD+   +   D+V  A  Q +L+      +KPGG 
Sbjct: 333 DFSGGPFDAVLLDAPCSATGTLRRHPDIAVNKRPGDLVTLAGLQARLIAHAADLLKPGGT 392

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S CSL+ ++ E+ V+++L +    +   P+     + ID    ++P+G +R  P   
Sbjct: 393 LVYSTCSLEPEEGEQQVERLLAARSDIIR-APIVPGEVEGIDP--FITPQGDVRTLPSHW 449

Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
            + +   SG+DGFFA  L+R  
Sbjct: 450 MRGEAERSGLDGFFAARLKRRA 471


>gi|256045414|ref|ZP_05448306.1| Fmu domain protein, Sun [Brucella melitensis bv. 1 str. Rev.1]
 gi|260565697|ref|ZP_05836180.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991841|ref|ZP_06104398.1| fmu domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151070|gb|EEW86165.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263002797|gb|EEZ15200.1| fmu domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 465

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 191/445 (42%), Positives = 260/445 (58%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   L    
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALHNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L   +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVESNLTDLPGFAEGEWWVQDVAASLPARLMDDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K     P    L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465


>gi|306844795|ref|ZP_07477380.1| Sun [Brucella sp. BO1]
 gi|306274967|gb|EFM56737.1| Sun [Brucella sp. BO1]
          Length = 465

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 190/445 (42%), Positives = 263/445 (59%), Gaps = 10/445 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGAEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D
Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   D+ K A  Q +LL    + VKPG +
Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDVAKLAELQGRLLAHAATLVKPGSV 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K    +P+   L P          +   ++ EG++R TP  L
Sbjct: 385 IVFSNCSLHPLEGEEMARKA-AENPL---LEPFPITEQDCPGLEGLVTVEGFLRSTPADL 440

Query: 421 E----KIDGVSSGMDGFFAVALRRL 441
                  +   +GMDGFFA   +R+
Sbjct: 441 PPDRFDGNPHMAGMDGFFAARFKRV 465


>gi|299133157|ref|ZP_07026352.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2]
 gi|298593294|gb|EFI53494.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2]
          Length = 446

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 168/439 (38%), Positives = 254/439 (57%), Gaps = 7/439 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ ++  V+ KR +L   L+        + LS RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADIIDGVLHKRRTLDDQLEGPAAHPVLKTLSDRDRALMRRLVATVLRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  +L  +L   +P      Q  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LGHLLSRLLDRGIPSDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQADRRAAKYAG 132

Query: 123 LVNSILRRVSREK-IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE    + +   G+  +P W   R    YG++   A++ A      +DLT
Sbjct: 133 LVNAVLRRCAREGLPLVEEVKDGMIDLPPWLVARWIKAYGEDNARAMARAIGHEPPLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D E+WA +L+  MLPTG +R  +L   I  LPGF+EG WWVQDA+A+IP +LFG + 
Sbjct: 193 VKTDSESWATRLHGEMLPTGTVR-TQLHGPITMLPGFSEGAWWVQDAAAAIPARLFGDIT 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             SV DLCAAPGGKTAQL  +GA VTA+D S  RL +L+ N  RL L A  +        
Sbjct: 252 GKSVADLCAAPGGKTAQLAQAGAHVTAVDRSAGRLARLKDNFARLSLEASCV--ATDATE 309

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FDA+L+DAPC +TGTIRRHPDV W ++  D+      Q++LL + ++ +KPGG++
Sbjct: 310 WDGGPFDAILLDAPCMATGTIRRHPDVAWLKNEADMGALNALQKRLLQKSVTLLKPGGML 369

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL+ ++ E+ +  +L S P  V+ +P+     +   ++  ++ +G +R  P  L 
Sbjct: 370 VYCTCSLEPEEGEQAIASLLASEP-QVKRMPVTP--GELAGLSELITADGDVRTLPCHLP 426

Query: 422 KIDGVSSGMDGFFAVALRR 440
             D   SG+DGF+A  L +
Sbjct: 427 HADPKLSGLDGFYAARLVK 445


>gi|148251938|ref|YP_001236523.1| putative ribosomal RNA small subunit methyltransferase B
           [Bradyrhizobium sp. BTAi1]
 gi|146404111|gb|ABQ32617.1| putative Ribosomal RNA small subunit methyltransferase B
           [Bradyrhizobium sp. BTAi1]
          Length = 450

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 171/440 (38%), Positives = 244/440 (55%), Gaps = 6/440 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ ++  V+ K  +L   LD        + L+ RD+ L+R +V  TLR L  
Sbjct: 13  PGLAARRIAADVVDGVLHKHRTLDDQLDGTGAHPGLKQLADRDRALMRRLVATTLRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  VL  +L   +P      Q  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LGHVLSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQADRRAAKYAG 132

Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE   LL  + G    I  W   R    YG+     I+ A      +DLT
Sbjct: 133 LVNAVLRRCAREGAGLLDDVQGQPLDIAPWLLTRWIAHYGEATAKNIAAALGQEPSLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA +L+  +LPT  +R   L  S+  LPGFAEG WWVQDA+A++P +LFG + 
Sbjct: 193 VKSDAAQWAARLHGEVLPTETVR-TLLHGSVTVLPGFAEGQWWVQDAAAALPARLFGDVA 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300
             ++ DLCAAPGGKTAQL   GA VTA+D S  R+ +L+ N+ RL L A   + +   + 
Sbjct: 252 GKTMADLCAAPGGKTAQLAHGGAHVTAVDRSPARMARLKDNMTRLQLTAETAVADAAEWQ 311

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD +LVDAPC+STGTIRRHPDV W R   DI   +  QR+LL +  S +KPGG+
Sbjct: 312 PAATGGFDGILVDAPCTSTGTIRRHPDVGWLRSEADIAALSSVQRRLLTRAASLLKPGGM 371

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL+ ++ E+VV+  L       EL  +     +   +A  ++  G +R  P  L
Sbjct: 372 LVYCTCSLEPEEGEQVVESALA---DTTELRRVPITPSEVAGLAELITEAGDLRTLPCHL 428

Query: 421 EKIDGVSSGMDGFFAVALRR 440
              D    G+DGF+A  L R
Sbjct: 429 PHQDPRLGGLDGFYAARLER 448


>gi|146337494|ref|YP_001202542.1| putative ribosomal RNA small subunit methyltransferase B
           [Bradyrhizobium sp. ORS278]
 gi|146190300|emb|CAL74296.1| putative Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
           methyltransferase)(rsmB) [Bradyrhizobium sp. ORS278]
          Length = 450

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 174/440 (39%), Positives = 251/440 (57%), Gaps = 6/440 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ ++  V+ K  +L   LD        + L+ RD+ L+R +V  TLR L  
Sbjct: 13  PGLAARRIAADVIDGVLHKHRTLDDQLDGPGAHPGLKQLADRDRALMRRLVATTLRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  VL  +L   +P      Q  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LGNVLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQADRRAAKYAG 132

Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE   LL    G    I  W  +R  + YG+     I+ A      +DLT
Sbjct: 133 LVNAVLRRCAREGAALLDDAKGQPLDIAPWLLKRWTDHYGEATARDIAAALGQEPSLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA +L+  +LPTG +R   L  S+  LPGFAEG WWVQDA+A++P +LFG + 
Sbjct: 193 VKSDPAQWASRLHGEVLPTGTVR-TLLHGSVTVLPGFAEGQWWVQDAAAALPARLFGDVA 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-MDAFD 300
             S+ DLCAAPGGKTAQL   GA+VTA+D S  R+ +L+ N+ RL L AE ++     + 
Sbjct: 252 GKSMADLCAAPGGKTAQLAHGGARVTAVDRSPARMSRLKDNMTRLQLPAETVVTDAAEWQ 311

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD +L+DAPC+STGTIRRHPDV W R+  DI   +  Q +LL +    +KPGG 
Sbjct: 312 PADAGGFDGILLDAPCTSTGTIRRHPDVGWLRNEADIAALSGTQVRLLTRAAGLLKPGGT 371

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL+ ++ E+VV  VL +    +  VP++ A  +   +A  ++P G +R  P  L
Sbjct: 372 LVYCTCSLEPEEGEQVVDHVLAA-GTELRRVPIDPA--EVAGLAELVTPMGDLRTLPCHL 428

Query: 421 EKIDGVSSGMDGFFAVALRR 440
              D    G+DGF+A  L R
Sbjct: 429 PHADPRLGGLDGFYAARLER 448


>gi|190893964|ref|YP_001980506.1| RNA methyltransferase - sun protein [Rhizobium etli CIAT 652]
 gi|190699243|gb|ACE93328.1| probable RNA methyltransferase - sun protein [Rhizobium etli CIAT
           652]
          Length = 464

 Score =  294 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 217/423 (51%), Positives = 286/423 (67%), Gaps = 4/423 (0%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +++ L   LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA +  +L S LP 
Sbjct: 44  VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 103

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L +  AQILYLDV D++ VDLAVEQA +D  NR FAKLVN++LRR+ REK  
Sbjct: 104 GARALHHVLSIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDP 163

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197
           +L  I  ++ +P WF  RLE  YG++  LAIS + + P  IDLTVK D E WA +LN V 
Sbjct: 164 VLAEIDKVAPMPSWFLARLEKAYGRDAALAISQSQLEPAAIDLTVKSDAEGWAKRLNGVA 223

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
           LPTGG+RL      I SL GF EG WWVQDA+ASIP +LFG L+     DLCAAPGGKTA
Sbjct: 224 LPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDLSGKRAADLCAAPGGKTA 283

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           QLI++G  VTALD S+ RL +LR NLDRL L AE +   D   + P + FDA+L+DAPCS
Sbjct: 284 QLILAGGTVTALDQSESRLRRLRSNLDRLGLKAETV-AADLTTFKPAEGFDAILLDAPCS 342

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           STGT RRHPDVLWT+  +DI + A  Q +LL   ++ +KP G +VFSNCSLD  + EEVV
Sbjct: 343 STGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPLGTLVFSNCSLDPAEGEEVV 402

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
            +VL  +   +E V +++  W  ++ A  ++  G  R  P ML+  +G++SG+DGF+A  
Sbjct: 403 ARVLSDT-DAIERVAISAGDWPGLEAA--ITSLGEFRTLPTMLKMPEGIASGLDGFYAAV 459

Query: 438 LRR 440
           LRR
Sbjct: 460 LRR 462


>gi|90421553|ref|YP_529923.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18]
 gi|90103567|gb|ABD85604.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18]
          Length = 450

 Score =  294 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 174/440 (39%), Positives = 253/440 (57%), Gaps = 6/440 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ +L  V+ K  +L   L+        + LS RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADILDGVLHKHRTLDDQLEGAAAHPGLKTLSDRDRALMRRLVATILRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  VL  +L   LP      Q  L +  AQIL+++V D+A VDL+V   + D+    +A 
Sbjct: 73  LGHVLSRMLDRGLPTDAPRAQSALLIGAAQILWMEVPDHAAVDLSVRLVQSDRRAAKYAG 132

Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE   L+  + G S  +P W   R    YG +   AI+ A      +DL+
Sbjct: 133 LVNAVLRRCAREGQPLIDEVQGQSLDVPPWLLARWSAHYGADTARAIARAIGEEPSLDLS 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D E WA +L+  +LPTG +R   L  S+  LPGF +G WWVQDA+A++P +LFG L 
Sbjct: 193 VKSDAEAWASRLHGEVLPTGTVR-TLLQGSVKMLPGFDDGQWWVQDAAAALPARLFGDLT 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300
             SV DLCAAPGGKTAQL  +GA VTA+D S+ R+ +LR NL RL L A   + +   + 
Sbjct: 252 GKSVADLCAAPGGKTAQLCNAGAWVTAIDRSQSRVARLRENLGRLGLPAETAVADAAEWP 311

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FDAVL+DAPCSSTGTIRRHPDV W +   DI   A  Q++LL + +S +KPGG 
Sbjct: 312 GNGGDGFDAVLLDAPCSSTGTIRRHPDVAWLKQEADIGALAAQQQRLLHKAVSLLKPGGT 371

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL+ ++ E  +  +L  +   +   P++S+  +   +   ++P+G +R  P  L
Sbjct: 372 LVYCTCSLEPEEGEVAIAALLAGNSG-MRRAPVDSS--EVAGLGDLITPDGALRTLPCHL 428

Query: 421 EKIDGVSSGMDGFFAVALRR 440
              D    G+DGF+A  L +
Sbjct: 429 PHPDPRLGGLDGFYAARLVK 448


>gi|239832893|ref|ZP_04681222.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301]
 gi|239825160|gb|EEQ96728.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301]
          Length = 465

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 196/446 (43%), Positives = 265/446 (59%), Gaps = 10/446 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 25  RPGLAARLCAARLLGAVIEKNTSLDGLTDNTHGHPQYLALEPRDRALVRAILGSALRNRG 84

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V++AQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 85  SIERAINKRLDRPLPENAVALKHLLHVAIAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 144

Query: 122 KLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR+SR K       +   + +PEWF + +   YG E+  AI         ID 
Sbjct: 145 GLVNALLRRLSRNKERALAHTLEPETNVPEWFAKSITEAYGAEKAAAILAMHAYEPPIDF 204

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D E WA KL  V LP G +RL+ +  ++  L GFAEG WWVQD +AS+P +L G +
Sbjct: 205 TVKGDAEAWAEKLGGVALPNGSVRLQTVEGNLTDLLGFAEGDWWVQDVAASLPARLMGDI 264

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++LR NL+RL   A+ +   +  D
Sbjct: 265 RGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLRGNLERLGFEAKTV-ATNLMD 323

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 324 FQPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 383

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSL   + EE+ +K    +P+   L P          +   ++ EG++R TP  L
Sbjct: 384 IVFSNCSLHPLEGEEMARKA-AENPL---LEPFPITEQDCSGLEGLVTVEGFLRSTPADL 439

Query: 421 E----KIDGVSSGMDGFFAVALRRLI 442
                  +   +GMDGFFA   +R  
Sbjct: 440 PPKRFDGNPQMAGMDGFFAARFKRRA 465


>gi|158426322|ref|YP_001527614.1| rRNA SAM-dependent methyltransferase [Azorhizobium caulinodans ORS
           571]
 gi|158333211|dbj|BAF90696.1| rRNA SAM-dependent methyltransferase [Azorhizobium caulinodans ORS
           571]
          Length = 456

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 176/440 (40%), Positives = 257/440 (58%), Gaps = 13/440 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ ARL+++  L  ++R   SL      +        L  RD+ L   IV   LR L 
Sbjct: 28  SAGLPARLLAADALDRILRGNASLEDAFIHD------AGLEPRDRALAFRIVATALRRLG 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + AVL  ++    P+    ++ +L V  AQIL++DV D+A V L+V+ A+ D     FA
Sbjct: 82  TLRAVLTALMERGAPKSAPKVETVLLVGAAQILFMDVPDHAAVGLSVDIARGDNSTAGFA 141

Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            L+N++LRR++RE+ E L   A +    PEW ++R    YG ER  AI+D       +D+
Sbjct: 142 GLINAVLRRLAREREERLAAFATLGLDTPEWLRQRWTKAYGPERAKAITDILSHEPALDI 201

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D   WA KL   +LPTG +R+ +   ++ +LPG+ +G WWVQDA+A++P +L G +
Sbjct: 202 TVKSDAAGWAEKLGGEVLPTGTVRVLQA-GAVRALPGYEDGEWWVQDAAAALPARLLGDV 260

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
              SV DLCAAPGGKTAQL  +GAKVTA+D S  RL +L  NL RL L A D+ E DA  
Sbjct: 261 AGKSVADLCAAPGGKTAQLAAAGAKVTAVDRSGPRLARLSENLARLKLTA-DVREADAAS 319

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FDA+L+DAPC++TGT+RRHPD+ W +   D+   A  Q  L+   +  +K GG+
Sbjct: 320 LKAG-PFDAILLDAPCTATGTLRRHPDIAWAKRPSDVATLAAVQAGLIDHALDLLKSGGL 378

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CSL+ ++ E  V +VL +    VE VPL     +   +A  ++PEG +R  P  L
Sbjct: 379 LVYATCSLEPEEGEAQVARVLAAR-NDVERVPLKPEEMEG--LAPYITPEGDLRTLPCDL 435

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            + +   SG+DGFFA  LR+
Sbjct: 436 VRGEPERSGLDGFFAARLRK 455


>gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4]
 gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4]
          Length = 448

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 111/466 (23%), Positives = 187/466 (40%), Gaps = 43/466 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  N R  +  +L  + ++R     L+D E        L   D+ L+  +V   LR  
Sbjct: 1   MST-TNPRSAAFEILLRIDKERSYADILIDRELSSG---FLQGPDRGLLTELVYGVLRRQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +++        R + S+  LLR+ + QI YLD V   A V+  V+ AK       
Sbjct: 57  GTLDYIINRFSKQKSERLERSVLVLLRIGLYQIFYLDRVPVSAAVNETVKLAK--VLAPR 114

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            +  VN++LR   RE+ ++             +     P W         G     +++ 
Sbjct: 115 ASGFVNAVLRSADRERDDIAYPDKEKDPVGYLSTFYSHPSWLVAGWIGQLGFAEAESLAK 174

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEG 221
           A   P  + +         E    +L +  +     R            S+  L  F +G
Sbjct: 175 AMAEPPPLTIRTNTLKTSREELMERLASEGVQCEATRFSPLGVRIITAGSVARLQSFRDG 234

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
           ++ VQD S+ + V          VLD CAAPGGK   +   + +  ++ A DV  R+L  
Sbjct: 235 LFTVQDESSQLAVMFLSPEPGEKVLDACAAPGGKATHMAQLMGNSGEIIACDVIGRKLRL 294

Query: 279 LRCNLDRLHLYAEDI---IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           +  N  RL +              +      F  +L+DAPCS  G IRR+P+  W +   
Sbjct: 295 IGENAARLGISCIKTVPLNTARPLNSIKDARFQRILLDAPCSGLGVIRRNPEGKWWKTAA 354

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D+ +    Q+ +L     ++K GGI++++ CS  ++++E V+   L      V    L  
Sbjct: 355 DVAELVRGQKTILENLAGYLKRGGILLYATCSTTREENEAVIDDFLSRHSDFV----LED 410

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      ++P+G  R  P           GMDGFFA  L+++
Sbjct: 411 LRVLFPAYGELITPQGCFRGWPH--------RQGMDGFFAARLKKI 448


>gi|222087916|ref|YP_002546454.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Agrobacterium radiobacter K84]
 gi|221725364|gb|ACM28520.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Agrobacterium radiobacter K84]
          Length = 469

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 225/428 (52%), Positives = 290/428 (67%), Gaps = 4/428 (0%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +LS V+ ++  L  +LD E G+ A++ L   D+ LVRAI+N  LR LPRI+A +  +L 
Sbjct: 44  KILSAVIDRKTPLDGMLDAEGGNPAYKALGDSDRALVRAILNSALRHLPRIEAAIASLLD 103

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S LP    +L  +L V  AQ+LYLDV D++ VD+AVEQA +D  NR FAKLVN+ILRR+ 
Sbjct: 104 SPLPEGARALHHVLVVGAAQMLYLDVPDHSAVDIAVEQANQDPRNRRFAKLVNAILRRIG 163

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
           REK ++L + A +  +P+WF  RLE  YG++  L ISD  + P  ID+TVK D E WA +
Sbjct: 164 REKQDILSQGADVPAMPKWFLTRLEAAYGRQAALKISDTQLEPAAIDVTVKSDAEGWAKR 223

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           LN V+LPTGG+RL     SI SL GFA+G WWVQDA+ASIP +LFG+L    V+DLCAAP
Sbjct: 224 LNGVVLPTGGVRLAAFEGSIPSLDGFADGEWWVQDAAASIPAKLFGSLAGQRVVDLCAAP 283

Query: 253 GGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312
           GGKTAQLI++G KVTALD S  RL++L  NL RL L AE +   D   + P  LFDA L+
Sbjct: 284 GGKTAQLILAGGKVTALDQSANRLKRLSGNLARLGLEAETV-VADMAKFQPDDLFDAALL 342

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCSSTGT RRHPDVLWT+  +DI K    Q +LL   ++ VKPGG+VVFSNCSLD ++
Sbjct: 343 DAPCSSTGTTRRHPDVLWTKGPEDIAKLTALQERLLRHALTLVKPGGLVVFSNCSLDPEE 402

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
            E++V +VL  +    E V +    W  ++ A  +SP G  R TPDML    G +SG+DG
Sbjct: 403 GEDLVARVLSET-DMAERVAIKPEDWPGLEAA--ISPLGAFRTTPDMLPLSGGFASGLDG 459

Query: 433 FFAVALRR 440
           FFAV LRR
Sbjct: 460 FFAVVLRR 467


>gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424]
 gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424]
          Length = 452

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 123/460 (26%), Positives = 207/460 (45%), Gaps = 42/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++  +L  + +K       LD     +    L   D+ LV  +V   +R    +D 
Sbjct: 7   NPRQLALIILRDIYQKEAYTDLALDQGIKRADLGNL---DRGLVTELVYGIVRRQRTLDE 63

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++  +      ++   L+ +L + + Q+ YLD +   A V+ +VE AK++K  +  + +V
Sbjct: 64  IISQLGTKKANQQPPDLRLILHIGLYQLRYLDQIPPSAAVNTSVELAKKNKLGK-LSGVV 122

Query: 125 NSILRRVSR----------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           N ILR+  R             + +  +  +   P W  +   + +G+E+   + +    
Sbjct: 123 NGILRQYDRIKEQGKDPLKFPSDPVNHLGVLHSFPNWIIQLWLDEFGQEQTEQLCEWFNQ 182

Query: 175 PLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           P  ID+ V     T             K+  +      +RL     SI  LPGF EG W 
Sbjct: 183 PAMIDIRVNLLKTTVEKVASIFSDVGVKVKPIPHLPQSLRLIGGTRSIQQLPGFEEGWWT 242

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           VQD+SA +   L     +  ++D CAAPGGKT  +   +     + A D    RL K++ 
Sbjct: 243 VQDSSAQLVTHLLDPQPDEIIIDACAAPGGKTTHIAQLMGDRGTIWACDRVPSRLRKVQQ 302

Query: 282 NLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           N +RL L +  I E D+      ++  D VL+DAPCS  GT+ + PD+ W +  + I + 
Sbjct: 303 NAERLQLNSIRICEGDSRHLTQFRETADRVLLDAPCSGLGTLHKRPDIRWRQTPEKIAEL 362

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           +  Q +LL +  ++VKP GI+V++ C+L+  ++E V+   L   P      P +      
Sbjct: 363 SQLQTELLEETATWVKPKGILVYATCTLNPLENERVIAAFLDRHPSWHIQTPSSDNTV-- 420

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              A   +P GWI++ P            MDGFF V L +
Sbjct: 421 ---AAFATPSGWIKVLPH--------QHQMDGFFMVKLVK 449


>gi|209883490|ref|YP_002287347.1| SUN protein [Oligotropha carboxidovorans OM5]
 gi|209871686|gb|ACI91482.1| SUN protein [Oligotropha carboxidovorans OM5]
          Length = 446

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 167/439 (38%), Positives = 252/439 (57%), Gaps = 7/439 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ ++  V+ KR +L   L+      A + LS RD+ L+R +V   LR    
Sbjct: 13  PGLAARRIAADIIDGVLHKRRTLDDQLEGAAQHPALKSLSDRDRALMRRLVATVLRRRGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  +L  +L   +P      Q  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LAYLLSRLLDRGVPSDAPRAQSALMIGAAQILWMDVPDHAAVDLSVRLVQADRRAAKYAG 132

Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE I L+         +P W   R    YG++   A++ A      +DLT
Sbjct: 133 LVNAVLRRCAREGIPLIDESTDEMIDLPPWLATRWIKAYGEDTARAMARAIGHEPPLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D E WA +L+   LPTG +R   L  S+  LPGF+EG WWVQDA+A++P +LFG + 
Sbjct: 193 VKSDSENWATRLHGETLPTGTVR-TLLHGSVTMLPGFSEGAWWVQDAAAALPARLFGDIA 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V DLCAAPGGKTAQL  +GAKVTA+D S  RL +L+ N  RL L A  +        
Sbjct: 252 GKPVADLCAAPGGKTAQLAQAGAKVTAVDRSAGRLARLKENFARLGLEATYV--AADATE 309

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FDA+L+DAPC +TGTIRRHPDV W ++  D+   +  Q +LL + ++ +KPGG +
Sbjct: 310 WEAGPFDAILLDAPCMATGTIRRHPDVAWLKNEADLDALSALQARLLRKSVTLLKPGGTL 369

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL+ ++ E+ +  +L + P  ++  P+ ++  +   ++  +SP G +R  P  L+
Sbjct: 370 VYCTCSLEPEEGEQAIAALLEAEP-QMKRRPVEAS--ELAGLSELISPMGDVRTLPCHLQ 426

Query: 422 KIDGVSSGMDGFFAVALRR 440
             D   SG+DGF+A  L +
Sbjct: 427 HDDPKLSGLDGFYAARLVK 445


>gi|251797738|ref|YP_003012469.1| sun protein [Paenibacillus sp. JDR-2]
 gi|247545364|gb|ACT02383.1| sun protein [Paenibacillus sp. JDR-2]
          Length = 491

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 196/462 (42%), Gaps = 40/462 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V          L+    +     L + D  LV  +V  T++    +D  
Sbjct: 40  PRELALDTLVKVAETGAYSNLQLNRVLQE---AQLQRADAALVTELVYGTIQRQLTLDHW 96

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L       L + +  + QLLR+S  Q+LYLD +  +A V+ AV  AKR + ++  + +VN
Sbjct: 97  LGKFAAKGLRKLEPWVHQLLRMSAYQLLYLDRIPAHAAVNEAVTIAKR-RGHQGISGMVN 155

Query: 126 SILRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            ILR + R +             + +I+     PEW  ER    YG E   AI  +   P
Sbjct: 156 GILRSIDRNRAELTVDAIADKNPVVQISVRYSYPEWLVERWVKAYGAETAEAICASGNEP 215

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGI---------RLKELPESIVSLPGFAEGVWWVQ 226
            +  + V     +    L+ +    G            +     ++    GF +G+W +Q
Sbjct: 216 PHASVRVNPLRSSRNEVLSLLTEQGGDAEASRLAPAGIVVRRGGNLADTEGFRDGLWTMQ 275

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +  ++      + VLD CAAPGGKT  +   +    KV A D+   + + +    
Sbjct: 276 DESSMLVAEVVAPKAGMQVLDCCAAPGGKTTHMAELMSGKGKVYANDLHPHKRQLIVDQA 335

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            RL L   + I  DA     +      DAVL+DAPCS  G IRR P++ WT+   D+ + 
Sbjct: 336 VRLGLQNIEAITEDAGKLGERFAPASIDAVLLDAPCSGFGVIRRKPEIKWTKTAGDVAEI 395

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  QR+LL      VKPGG +V+S C+++  ++EE V   L+  P               
Sbjct: 396 AAIQRRLLGAVAGLVKPGGTLVYSTCTIESTENEEQVAVFLKEHPEFQLDAEWPEEALAP 455

Query: 401 IDMAMALSP--EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +     +    +G  ++ P           G DGFF   LRR
Sbjct: 456 LREKGIIDSSFDGQAQLLPHHY--------GSDGFFIARLRR 489


>gi|153008423|ref|YP_001369638.1| Fmu (Sun) domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151560311|gb|ABS13809.1| Fmu (Sun) domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 453

 Score =  292 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 196/448 (43%), Positives = 273/448 (60%), Gaps = 10/448 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 9   RPGLAARLCAARLLGAVIEKNTSLDGLTDNTHGHPQYLALEPRDRALVRAILGSALRNRG 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V++AQI YL++ D++ VDLAVE A  D  NR +A
Sbjct: 69  SIERAINKRLDRPLPENAVALKHLLHVAIAQIFYLNLPDHSAVDLAVEAANADPRNRKYA 128

Query: 122 KLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR+SR K       +   + +PEWF + + + YG E+  AI         ID 
Sbjct: 129 GLVNALLRRLSRNKERALAHTLEPETNVPEWFAKSITDAYGAEKAAAILAMHAYEPPIDF 188

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L G +
Sbjct: 189 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGDWWVQDVAASLPARLMGDI 248

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DLCAAPGGKTAQL++ GA VTALD+S+ RL++LR NL+RL   A+ +   +  D
Sbjct: 249 KGKRVADLCAAPGGKTAQLVLQGANVTALDLSENRLKRLRGNLERLGFEAKTV-ATNLMD 307

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG+
Sbjct: 308 FQPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 367

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID--MAMALSPEGWIRITPD 418
           +VFSNCSL   + EE+ +K    +P+ +E  P+      S++  +   ++ EG++R TP 
Sbjct: 368 IVFSNCSLHPLEGEEMARKA-AENPL-LEPFPITEQDCPSLNGLLDGLVTAEGFLRSTPA 425

Query: 419 MLE----KIDGVSSGMDGFFAVALRRLI 442
            L     + +   +GMDGFFA   +R  
Sbjct: 426 DLPPDRFEGNPHMAGMDGFFAARFKRRA 453


>gi|296133297|ref|YP_003640544.1| sun protein [Thermincola sp. JR]
 gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR]
          Length = 451

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 103/465 (22%), Positives = 196/465 (42%), Gaps = 41/465 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+S   AR ++  ++  V R+       L+            ++D+  +  +V  TL+ L
Sbjct: 1   MRS---ARKLALEVIYQVDREGAYSNIALNKVLEKYQP---EKKDRAFITELVYGTLKRL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +    +   L      ++ ++R+ + QI ++D V + A  + +V  A++   ++ 
Sbjct: 55  NTLDWIAGRFVSRPLDSLTPWIRNIIRMGIYQIFFMDKVPNSAACNESVNLARKF-GHQG 113

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
             K VN +LR V R K  +             +     P W        +G E    +  
Sbjct: 114 TVKFVNGVLRNVVRHKDRVKWPDKDAEPVEYLSIHYSHPTWMVSLWIEEFGFEETEKLCR 173

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEG 221
           A        +         +     L    +                 +SI SL   A+G
Sbjct: 174 ANNETPPNSIRTNTLKISRDELIGVLAGEGVECRKGEFAPETINISGFKSIASLKSHAQG 233

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
           ++ VQD S+++   +        V+D C+APGGKT  L   + +  ++ A D+ + ++  
Sbjct: 234 LYLVQDESSTMVGHIVAPKPGSKVIDACSAPGGKTTHLAQLMNNQGRILAGDIHQHKMGL 293

Query: 279 LRCNLDRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           ++ N  RL +   +   +DA       K+  D VLVDAPCS  G +RR P++ W +  + 
Sbjct: 294 IKENCSRLGVNIIEPALVDARELHKEYKEWADFVLVDAPCSGLGVLRRRPELRWRKTVNR 353

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
             +    Q  +L      VK GG++V+S C+++++++ ++V+  L ++P    L  L   
Sbjct: 354 FDELTALQLAILRSAAQCVKAGGVLVYSTCTVNRRENLDLVRSFLENAP-EFRLDSLLPL 412

Query: 397 YWKSIDMAMALS-PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  + D     +  EG+I+  P +         G DGFFA  + +
Sbjct: 413 FPDTCDRTKFPTAAEGYIQFLPHV--------HGTDGFFAARMVK 449


>gi|303239358|ref|ZP_07325886.1| sun protein [Acetivibrio cellulolyticus CD2]
 gi|302593144|gb|EFL62864.1| sun protein [Acetivibrio cellulolyticus CD2]
          Length = 450

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/464 (21%), Positives = 203/464 (43%), Gaps = 40/464 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +  R  +  +L  + +        L+    D A   L   D+  +  +V  TL++ 
Sbjct: 1   MKLDLP-RETALKILYDINKSGAYSNIALNKYLEDKALSGL---DKAFITELVYGTLKWR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             ID ++D      + +    +  +LR+ V QI+Y+  + + A  + +V  AKR   +  
Sbjct: 57  LSIDYIIDQFSSVKINKLSPWILNILRLGVYQIVYMSKIPESAACNESVNLAKRY-GHSA 115

Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
            ++ VN++LR                +L+  ++     P+W  ++  + +G+     +  
Sbjct: 116 SSRYVNAMLRNVARSKNKIVYPDRNKDLISYLSIKYSHPDWMVKKWLDRFGESFTEELLK 175

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEG 221
           +      + + V       E   + L                     P S+  +  F +G
Sbjct: 176 SNNETAPLTVRVNSLKTTREELENTLKKEGFETESAKYIENALTINNPSSLTKMEAFVKG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            + VQD S+ +  ++F       ++D+C+APGGKT  +   + +  ++ A D+ + ++  
Sbjct: 236 FFQVQDESSMMVGRIFDPKPGEFIVDVCSAPGGKTTHIAELMGNRGQIIARDIHEHKIRL 295

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +     RL +        DA +         D VLVDAPC+  G IRR PD+ W R+++D
Sbjct: 296 INEASSRLGIDIIKAEIFDASEQDASLTDKADRVLVDAPCTGLGIIRRKPDIKWARNSND 355

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           + +    Q K+L     +VKPGG++V+S C+++ Q++EE+V+K L+ +     +  ++  
Sbjct: 356 LNEIVKLQEKILNASSKYVKPGGVLVYSTCTIEPQENEEMVKKFLKDNK-EYTMEDISKQ 414

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +      + +G+I++             G+DGFF   +R+
Sbjct: 415 LPDGLV--KDTTKDGYIQLY--------TNRDGIDGFFISKMRK 448


>gi|163757448|ref|ZP_02164537.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea
           phototrophica DFL-43]
 gi|162284950|gb|EDQ35232.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea
           phototrophica DFL-43]
          Length = 446

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 200/438 (45%), Positives = 265/438 (60%), Gaps = 6/438 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR  ++ LL+ V   R SL  LLD   G+ AF  L  +D++LVRAI+   LR L 
Sbjct: 11  KPGLAARQAATRLLAAVTESRASLDGLLDPAGGNPAFTGLGPQDRLLVRAILLSALRHLR 70

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            IDA +D ++ S LP    +L+QLLRV  AQIL+LDV D A VDLAV QA  D  NR FA
Sbjct: 71  VIDAYIDELVTSPLPEGAKALRQLLRVGAAQILFLDVPDRAAVDLAVSQANGDPRNRRFA 130

Query: 122 KLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR+ REK     +  A +   P+WF  R++N Y  +   +I      P  IDL
Sbjct: 131 GLVNALLRRMGREKESRLSELTATVPPFPDWFVSRIQNAYS-QEADSILSMLSVPPAIDL 189

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D   WA +L   +LPTG +R+      +  L G+  G WWVQDA+ASIP Q+F  L
Sbjct: 190 TVKTDPAGWAERLGGTVLPTGSVRIARPAGPVTDLEGYDGGDWWVQDAAASIPAQMFSRL 249

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           + L V DLCAAPGGKTAQL ++GA+VTA D S  RLE+L+ NL RL L         A D
Sbjct: 250 DGLEVADLCAAPGGKTAQLALAGARVTACDQSANRLERLKGNLSRLGLE-VSTHLSRAQD 308

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           +   + FD VLVDAPCSSTGT+RRHPD+ +T+  +DI +    QR LL      V+P G 
Sbjct: 309 FKAPEGFDGVLVDAPCSSTGTVRRHPDIPYTKGPEDITRLTQVQRALLDHAAGLVRPKGE 368

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCSLD ++ E +VQ  L   P    + P++++ W  ++ A  ++  G +R  P ML
Sbjct: 369 LVFSNCSLDPEEGELMVQGFLADHPSW-RIKPVDASRWPGMEAA--ITELGEVRTHPAML 425

Query: 421 EKIDGVSSGMDGFFAVAL 438
              D   +G+DGF+AV L
Sbjct: 426 SDDDPAQAGLDGFYAVVL 443


>gi|218460752|ref|ZP_03500843.1| RNA methyltransferase - sun protein [Rhizobium etli Kim 5]
          Length = 466

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 222/423 (52%), Positives = 288/423 (68%), Gaps = 4/423 (0%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +++ L   LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA +  +L S LP 
Sbjct: 46  VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 105

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L +  AQILYLDV D++ VDLAVEQA +D  NR FAKLVN++LRR+ REK E
Sbjct: 106 GARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKEE 165

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197
           +L  I  ++ +P WF  RLE  YG+E  LAIS + + P  IDLTVK D E WA +LN V 
Sbjct: 166 VLAEIGKVAPMPSWFLARLEKAYGREAALAISQSQLEPAAIDLTVKSDAEGWAKRLNGVA 225

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
           LPTGG+RL      I SL GF EG WWVQDA+ASIP +LFG L      DLCAAPGGKTA
Sbjct: 226 LPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDLAGKRAADLCAAPGGKTA 285

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           QLI++G  VTALD S+ RL +LR NLDRL L AE +   D   + P + FDA+L+DAPCS
Sbjct: 286 QLILAGGAVTALDQSESRLRRLRSNLDRLGLTAETV-AADLTTFKPPEGFDAILLDAPCS 344

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           STGT RRHPDVLWT+  DDI + A  Q +LL   ++ + P G++VFSNCSLD  + EEVV
Sbjct: 345 STGTTRRHPDVLWTKGPDDIARLAALQERLLRHALTLLTPFGMLVFSNCSLDPAEGEEVV 404

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
            +VL  +   +E VP+N+  W  ++ A  ++P G  R  P ML+  +G++SG+DGF+A  
Sbjct: 405 ARVLSDT-DAIERVPINAGDWPGLEAA--ITPLGEFRTLPTMLKMPEGIASGLDGFYAAV 461

Query: 438 LRR 440
           LRR
Sbjct: 462 LRR 464


>gi|78221293|ref|YP_383040.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter
           metallireducens GS-15]
 gi|78192548|gb|ABB30315.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter
           metallireducens GS-15]
          Length = 446

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 196/462 (42%), Gaps = 40/462 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +  N R  +  +L  V R R     LLD E        L+  D+ L+  +V   LR    
Sbjct: 2   TRSNPRRTALDILLRVERDRAFAEQLLDRELS---LGTLTGPDRGLLTELVYGVLRRQGT 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +D ++D    S   + + ++  +LR+ + Q+ +LD +   A V+ +V  AK        A
Sbjct: 59  LDFLVDAFAASRSGKLERAILVILRLGLYQLFFLDRIPTSAAVNESVNLAKAV--APRAA 116

Query: 122 KLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             VN++LRR  RE+  L            IA     P W  E+     G      ++ A 
Sbjct: 117 GFVNAVLRRADRERDSLPWPDRGADPAAYIAVRHSHPRWLVEQWIEQLGIPEAEELAVAM 176

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVW 223
                + + V       E +  +L A  +                  ++ +LPGFAEG++
Sbjct: 177 AEQAPLTIRVNTLKTTREAFMEELAAAGITAEPTVWAPHGVRILSRTAVTTLPGFAEGLF 236

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD S+ +            +LD+CAAPGGK   L   + +  +V A D+S ++L  + 
Sbjct: 237 TVQDESSQLAAFFLDPQPGERILDVCAAPGGKATYLAQLMENRGEVLACDISAKKLRLVA 296

Query: 281 CNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
               RL +     +  DA      +  FD +L+DAPCS  G IRR+P+  W +  DD+ +
Sbjct: 297 EAAARLGIGIIRTMAGDATKPGAGEPPFDRILLDAPCSGFGVIRRNPEGKWWKTPDDLAR 356

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR +L      ++PGG++++S CS    + E+VV   L      V    L      
Sbjct: 357 LAATQRNILAAVAPRLRPGGVLLYSTCSTMVAEDEDVVDDFLSRHEDFV----LEDLNAI 412

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           S D     +  G  R  P           GMDGFFA  +R+L
Sbjct: 413 SPDFPGQFTGRGHFRSWPH--------RHGMDGFFAARIRKL 446


>gi|85714014|ref|ZP_01045003.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A]
 gi|85699140|gb|EAQ37008.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A]
          Length = 454

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 168/442 (38%), Positives = 251/442 (56%), Gaps = 7/442 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+  R  ++ +L  ++ KR +L   L+        + L+ RD+ L+R +V   LR L 
Sbjct: 16  APGLATRRTAADILDGILHKRRTLDEQLEGATAHPGLKALADRDRALMRRLVATILRRLG 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +  +L  +L   +P      Q  L +  AQIL++DV D+A VDL+V   + D+    +A
Sbjct: 76  TLGHLLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYA 135

Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR +RE   L++ +   S  +P W   R    YG+    AI+ A      +DL
Sbjct: 136 GLVNAVLRRCAREGQALIEEVRSESLDVPPWLMARWSRHYGENTAKAIAAAINYEPALDL 195

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D   WA +L+   LPTG +R   L  S+  LPGF++G WWVQDA+A++P +LFG +
Sbjct: 196 TVKADAAYWATRLHGEALPTGTVR-TSLQGSVTMLPGFSDGQWWVQDAAAALPARLFGDI 254

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY--AEDIIEMDA 298
           +   ++DLCAAPGGKTAQL  +GA VTA+D S  R+ +LR NL RL L   +     ++ 
Sbjct: 255 SGRRIIDLCAAPGGKTAQLAQAGADVTAMDRSPNRVARLRENLGRLSLTVRSIVADAIEW 314

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
            +      FD VLVDAPCS+TGTIRRHPDV W +   DI      Q++LL + I+ +KPG
Sbjct: 315 QNDVGVDSFDGVLVDAPCSATGTIRRHPDVAWLKQESDIGALTALQQRLLKKAITLLKPG 374

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +++  CSL+ ++ E+VV  +L S P  +  VP++ A  +   +   ++P G +R  P 
Sbjct: 375 GTLIYCTCSLEPEEGEQVVAALLASEPG-IRRVPVSGA--EVAGLTDIVTPAGDLRTLPC 431

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
            L   D    G+DGF+A  L +
Sbjct: 432 HLPHDDPTLGGLDGFYAARLTK 453


>gi|86359687|ref|YP_471579.1| RNA methyltransferase - sun protein [Rhizobium etli CFN 42]
 gi|86283789|gb|ABC92852.1| probable RNA methyltransferase - sun protein [Rhizobium etli CFN
           42]
          Length = 464

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 223/423 (52%), Positives = 289/423 (68%), Gaps = 4/423 (0%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +++ L   LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA +  +L S LP 
Sbjct: 44  VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 103

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L +  AQILYLDV D++ VDLAVEQA +D  NR FAKLVN++LRR+ REK E
Sbjct: 104 GARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDE 163

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197
           +L RI  ++ +P WF  RLE  YG++  LAIS + + P  IDLTVK D E WA +LN V 
Sbjct: 164 VLARIGKVAPMPSWFLARLEKAYGRDAALAISQSQLEPAAIDLTVKSDAEGWAKRLNGVA 223

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
           LPTGG+RL      I SL GF EG WWVQDA+ASIP +LFG L+     DLCAAPGGKTA
Sbjct: 224 LPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDLSGKRAADLCAAPGGKTA 283

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           QLI++G  VTALD S+ RL +LR NLDRL L AE +   D   + P + FDA+L+DAPCS
Sbjct: 284 QLILAGGAVTALDQSESRLRRLRSNLDRLALKAETV-AADLMTFKPSEGFDAILLDAPCS 342

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           STGT RRHPDVLWT+  DDI + A  Q +LL   ++ +KP G +VFSNCSLD  + EEVV
Sbjct: 343 STGTTRRHPDVLWTKGPDDIARLAALQERLLRHALTLLKPLGTLVFSNCSLDPAEGEEVV 402

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
            +VL  +   +E V +N+  W  ++ A  ++P G  R  P ML+  DG++SG+DGF+A  
Sbjct: 403 ARVLSDT-NAIERVAINAGDWPGLEAA--ITPLGEFRTLPTMLKMPDGIASGLDGFYAAV 459

Query: 438 LRR 440
           LRR
Sbjct: 460 LRR 462


>gi|327191218|gb|EGE58261.1| putative RNA methyltransferase - sun protein [Rhizobium etli
           CNPAF512]
          Length = 464

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 216/423 (51%), Positives = 285/423 (67%), Gaps = 4/423 (0%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +++ L   LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA +  +L S LP 
Sbjct: 44  VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 103

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L +  AQILYLDV D++ VDLAVEQA +D  NR FAKLVN++LRR+ REK  
Sbjct: 104 GARALHHVLSIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDA 163

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197
           +L  I  ++ +P WF  RLE  YG++  LAIS + + P  IDLTVK D E WA +LN V 
Sbjct: 164 VLAEIGKVAPMPSWFLARLEKAYGRDAALAISQSQLEPGAIDLTVKSDAEGWAKRLNGVA 223

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
           L TGG+RL      I SL GF EG WWVQDA+ASIP +LFG L+     DLCAAPGGKTA
Sbjct: 224 LLTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDLSGKRAADLCAAPGGKTA 283

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           QLI++G  VTALD S+ RL +LR NLDRL L AE +   D   + P + FDA+L+DAPCS
Sbjct: 284 QLILAGGTVTALDQSESRLRRLRSNLDRLGLKAETV-AADLTTFKPAEGFDAILLDAPCS 342

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           STGT RRHPDVLWT+  +DI + A  Q +LL   ++ +KP G +VFSNCSLD  + EEVV
Sbjct: 343 STGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPLGTLVFSNCSLDPAEGEEVV 402

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
            +VL  +   +E V +++  W  ++ A  ++  G  R  P ML+  +G++SG+DGF+A  
Sbjct: 403 ARVLSDT-DAIERVAISAGDWPGLEAA--ITSLGEFRTLPTMLKMPEGIASGLDGFYAAV 459

Query: 438 LRR 440
           LRR
Sbjct: 460 LRR 462


>gi|220906120|ref|YP_002481431.1| sun protein [Cyanothece sp. PCC 7425]
 gi|219862731|gb|ACL43070.1| sun protein [Cyanothece sp. PCC 7425]
          Length = 443

 Score =  291 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 199/457 (43%), Gaps = 40/457 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR ++   L  V  +       ++            +R++ L   +V   +R    +D
Sbjct: 1   MNARQLAFITLQAV-HRGAYADVAVERSLRQHPLT--EERERRLATELVYGCVRRQRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
           A++D +      ++   L+ LL + + Q+ YL+ +   A V   VE  K  +     A  
Sbjct: 58  ALVDQLAKKPARQQPPDLRTLLHLGLYQLRYLNHIPANAAVHTTVELVK-HRGLAGLAGF 116

Query: 124 VNSILRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR+  R+           + +Q++A +   P+W         G      +      
Sbjct: 117 VNGLLRQYIRQSAGGDPLSLPTDPVQQLALLHSYPDWIVANWMEQIGTTETDQLCQWLNR 176

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWW 224
           P  IDL +      IE       +  +    +       RL E   +I  LPGFA+G W 
Sbjct: 177 PPSIDLRINPLQTSIEQVGSAFQSAGVSVQPLAGLPQGLRLTEPSGAIEQLPGFAQGWWS 236

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           VQDASA +   L        ++D CAAPGGK+  +   I     V A D +  RL+KL  
Sbjct: 237 VQDASAQLVSHLLNPQPGEVIIDACAAPGGKSTHIAELIGDKGIVWACDRTPSRLKKLEQ 296

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N  RL L +  I + D+         D VL+DAPCS  GT+ RH D  W +  + + + A
Sbjct: 297 NRQRLKLNSIRICQGDSRMSEFTAQADRVLLDAPCSGLGTLHRHADARWRQTPESVAQLA 356

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL    ++VKPGG +V++ C+L   ++E V+Q+ L   P      P +  +    
Sbjct: 357 QLQTELLHHTATWVKPGGTLVYATCTLHPTENEAVIQQFLAHHPQWQIQAPRHPPF---- 412

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             A  L+P+GWI++ P            MDGFF V L
Sbjct: 413 -SADWLAPQGWIKVWPH--------RHQMDGFFMVRL 440


>gi|284050071|ref|ZP_06380281.1| Fmu, rRNA SAM-dependent methyltransferase [Arthrospira platensis
           str. Paraca]
 gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira
           platensis NIES-39]
          Length = 447

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 117/462 (25%), Positives = 199/462 (43%), Gaps = 47/462 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   L  + R+      +LD +        L   D+ L   +V    R    +DA
Sbjct: 4   NPRQLAFVTLRDIQRRGAFADIVLDEKLR---QADLKDADRRLGTELVYGCTRRRRTLDA 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++D +      ++   L+ +L + + Q+ +  ++   A V+  V+  K +  +      V
Sbjct: 61  IIDRLAKKPAHQQPPDLRIILHLGLYQLCFSSNIPPSAAVNTTVDLTKVNNLS-GLGGFV 119

Query: 125 NSILRRVSREKIELLQRIAGI-------------SIIPEWFKERLENFYGKERVLAISDA 171
           N +LR+  R         + +                P+W  +      G+ +   + D 
Sbjct: 120 NGLLRQYLRLVEAGNSLESILQLPENPVSRLGILHSFPDWMIKFWLEELGESQTQQLCDW 179

Query: 172 CISPLYIDLTVKF------DIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEG 221
                 +DL +         +ET   +   +  P      G RL     +I +LPG+ +G
Sbjct: 180 FNQSPSLDLRINPLSTTLETVETAFQQQEIIGSPLPKLPQGWRLSSGVGAIRNLPGYDQG 239

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            W VQDASA +   +        ++D CAAPGGKT  +   +    KV A+D S  RL+ 
Sbjct: 240 WWTVQDASAQLVGYIVDPQPGEIIIDACAAPGGKTTHIAELMGDNGKVIAIDRSPGRLKP 299

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           L+ N++RL L +  +   D+  +     + D VL+DAPCS  GT+ R  D  W +  D I
Sbjct: 300 LKQNINRLKLRSIQVEVGDSRHFPQYNNMADRVLLDAPCSGGGTLHRRSDSRWRQTPDQI 359

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + +  Q +LL     +VKPGG++V++ C+L  Q++E  +   L   P     VP     
Sbjct: 360 RQLSQLQAELLEMVSHWVKPGGVLVYATCTLYPQENEWAIASFLSRHPSWRVEVP----- 414

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             ++D+ +  + EGW++I P            MDGFF   LR
Sbjct: 415 --NLDLPVEPTKEGWLKIWPH--------RHQMDGFFIAKLR 446


>gi|16329552|ref|NP_440280.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
 gi|2500952|sp|P72943|RSMB_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|1652035|dbj|BAA16960.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
          Length = 446

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/460 (25%), Positives = 193/460 (41%), Gaps = 40/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           ++AR ++  +L  + R+       +D          LS  D+     +V   +R    +D
Sbjct: 2   ISARQLAFLILRDINRRDSYTDVAIDRALQKHP---LSPPDRRFCTELVYGVVRRQRTLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++ +    + ++   L++++++ + Q+ YLD V   A V+  V+ AK +   +  +K+
Sbjct: 59  CLIEQLGDRPIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKAN-GLKGLSKV 117

Query: 124 VNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LRR  R + +    +             P+W  E  E  +GK    ++        
Sbjct: 118 VNGMLRRYQRAEEQGKNILDQEKISLGEQYSFPDWLMELFEQTWGKAETESLCAYFNQNP 177

Query: 177 YIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            +DL +             +        A+     G+RL     +I  LPGFAEG W VQ
Sbjct: 178 SLDLRINPLKTSRVEVAQSLAELNLTTTAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQ 237

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           DASA    Q+       ++ D+CAAPGGKT  +   +    ++ A D    RL+KL    
Sbjct: 238 DASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQ 297

Query: 284 DRLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            RL L +  I E D        P +L D  L+D PCS  GT+ R+PD+ W +    I   
Sbjct: 298 QRLGLTSIKIWEGDLTQPGVKPPVELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATL 357

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q+ LL      VK GG +V+S C+L+  ++E  +++ L+               W S
Sbjct: 358 LPLQQALLKAIAPLVKSGGTLVYSTCTLNPAENEAQIERFLQDHEDWRS----EPFEWTS 413

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     G + I P             DGFF   L++
Sbjct: 414 PQGQTNSVTSGMLTILPHH--------HHQDGFFIANLKK 445


>gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328]
 gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328]
          Length = 458

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 198/462 (42%), Gaps = 47/462 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   L  + R+      +LD +        L   D+ L   +V    R    +DA
Sbjct: 4   NPRQLAFVTLRDIQRRGAFADLVLDEKLR---QADLKDADRRLGTELVYGCTRRRRTLDA 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++D +      ++   L+ +L + + Q+ +  ++   A V+  V+  K +  +      V
Sbjct: 61  IIDRLAKKPAHQQPPDLRIILHLGLYQLSFSTNIPPSAAVNTTVDLTKVNHLS-GLGGFV 119

Query: 125 NSILRRVS-------------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           N +LR+               +     + R+  +   P+   +      G+ +   + D 
Sbjct: 120 NGLLRQYLRLLEAGNSLESILQLPENPVSRLGILHSFPDSMIKFWLEELGESQTEQLCDW 179

Query: 172 CISPLYIDLTVKF------DIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEG 221
                 +DL +         +ET   +   +  P      G RL     +I +LPG+ +G
Sbjct: 180 FNQSPSLDLRINPLSTTLETVETAFQQREIIGSPIPKLPQGWRLSYGVGAIANLPGYDQG 239

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            W VQDASA +   +        ++D CAAPGGKT  +   +    K+ A+D S  RL+ 
Sbjct: 240 WWTVQDASAQLVGYVVDPQPGEIIIDACAAPGGKTTHIAELMGDNGKIIAIDRSPGRLKP 299

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           L+ N+ RL L +  +   D+  +       D VL+DAPCS  GT+ R  D  W +  D I
Sbjct: 300 LQQNIKRLKLRSIQVEVGDSRHFPQYNNTADRVLLDAPCSGGGTLHRRSDARWRQTPDQI 359

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + +  Q +LL     +VKPGG++V++ C+L  Q++E  +   L   P     VP     
Sbjct: 360 RQLSQLQAELLEMVSHWVKPGGVLVYATCTLHPQENEWAIASFLSRHPTWRVEVP----- 414

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             +ID+ +  + EGW++I P            MDGFF   LR
Sbjct: 415 --NIDLPVEPTKEGWLKIWPH--------RHQMDGFFIAKLR 446


>gi|222054190|ref|YP_002536552.1| sun protein [Geobacter sp. FRC-32]
 gi|221563479|gb|ACM19451.1| sun protein [Geobacter sp. FRC-32]
          Length = 448

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/466 (25%), Positives = 196/466 (42%), Gaps = 43/466 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S  N R  +  +L  + ++R     L+D E    A +     D+ L+  +V   LR  
Sbjct: 1   MSSS-NPRSAAFEILLRIDKERSYADILIDRELSAGALQG---PDRGLLTELVYGVLRRQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D ++       L R + S+  LLR+ + Q+ YLD V   A V+  V+ AK       
Sbjct: 57  ATLDHIIRRFSSQRLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETVKLAKVLV--PR 114

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            +  +N++LR   RE+  +             A +   P W         G +    ++ 
Sbjct: 115 ASGFINAVLRNADRERDHISYPDREKDPAAYLATVYSHPVWLAAAWIGQLGLDEAEMLAR 174

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEG 221
           A   P  I +         +     L+A  +     R         L  S+  L  F +G
Sbjct: 175 AMAEPPAITVRTNTLKTTRQQLMEILSAEGVQCETGRFSPMAIRINLSGSVSRLKSFRDG 234

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
           +++VQD S+ +     G      VLD CAAPGGK+ QL   +    ++ A DV  R+L+ 
Sbjct: 235 LFFVQDESSQLAAMFLGPQAGERVLDACAAPGGKSTQLAQLMGDRGEILACDVIGRKLKL 294

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           +  N  RL + +   + +D         +   D +L+DAPCS  G IRR+P+  W +   
Sbjct: 295 VDENAARLGISSIRTVLLDTARPLKSLERSPLDRILLDAPCSGLGVIRRNPEGKWWKSAA 354

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D++  A  QR LL      ++ GG ++++ CS   +++E V++  L      V    +  
Sbjct: 355 DVIDLAKGQRALLENLAGHLRSGGSLLYATCSTAVEENEAVIEAFLSRHDEFV----IED 410

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 D+A   +P G+ R  P           GMDGFFA  L++ 
Sbjct: 411 LRLLFPDLAELFTPAGFFRAWPH--------RHGMDGFFAARLKKK 448


>gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
 gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
          Length = 452

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 205/464 (44%), Gaps = 42/464 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   NAR ++  +L  + R+       LD          L+  D+ L   +V   +R   
Sbjct: 5   KKNTNARQLTLDILRHIDRQHTYTDIALDRSLT---QNNLNPSDRSLCTQLVYGIVRHQR 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D ++D +      ++   L+++L + + Q+ YL+ +   A V+ +V  AK  + NR  
Sbjct: 62  TLDTLIDQLGKKKAQQQPPDLRRILHIGLYQLRYLNHIPPSAAVNTSVNLAKDYQLNR-L 120

Query: 121 AKLVNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           + +VN ILR+  R+              +++IA     P W  E     +G+E    +  
Sbjct: 121 SGVVNGILRQYIRKSKESQDPLILPSNPIEKIAIQYSFPNWMIETWVKQWGEETTEKLCY 180

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAE 220
                  ID+ +      ++T  ++L                +RL+    +I +LPGF E
Sbjct: 181 WFNQTPTIDIRINPLKTTLQTLENQLIETGVNVTPLPPFPCTLRLQGKIGTIQTLPGFHE 240

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G W +QD+SA +   L       +++D CAAPGGKT  +   +     V A D +  RL+
Sbjct: 241 GHWTIQDSSAQLVSYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGTVIACDRTPSRLK 300

Query: 278 KLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           K++ N  RL L +   I  D           D VLVD PCS  GT+ RHPD+ W +  + 
Sbjct: 301 KVQQNAQRLQLNSIQTILGDSRHFTQFIDQGDRVLVDVPCSGLGTLHRHPDIRWRQTPEQ 360

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           I + +  Q+++L Q   +VKP G +V++ C+L+  +++++++  L          P    
Sbjct: 361 IQELSRLQQEILTQAAQWVKPQGTLVYATCTLNPTENQQIIETFLTHHSHWTIEPPSVDW 420

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +        ++   WI+I P             DGFF V L++
Sbjct: 421 LFYP-----FVTSSKWIQILPH--------EHHTDGFFMVKLKK 451


>gi|86747213|ref|YP_483709.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86570241|gb|ABD04798.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 450

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 171/440 (38%), Positives = 251/440 (57%), Gaps = 6/440 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ +L  V++KR  L   L+        + L  RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLPDRDRALMRRLVATILRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ +L  +L   +P      +  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LEHLLARMLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132

Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE   L+  +AG +  +PEW   R    YG +   AI+ A      +D+T
Sbjct: 133 LVNAVLRRCAREGHPLIDAVAGQALDVPEWLMARWRAHYGDDAAKAIALAISHEPSLDIT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D + WA +L   +LPTG +R   L  S+  LPGF +G WWVQDA+A++P +LFG L 
Sbjct: 193 VKSDPDHWAGRLYGELLPTGTVR-TLLQGSVKMLPGFDDGQWWVQDAAAALPARLFGDLA 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300
             SV DLCAAPGGKTAQL  +GA+V+A+D S  R+ +LR NL RL L A   + +   + 
Sbjct: 252 GKSVADLCAAPGGKTAQLAQAGARVSAIDRSPARVARLRENLARLGLEAETAVADATEWR 311

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD VLVDAPC+STGTIRRHPDV W +   DI   +  Q +LL + ++ +KPGG 
Sbjct: 312 SDAPGSFDGVLVDAPCASTGTIRRHPDVAWLKQESDIGALSAVQSRLLHKAVALLKPGGT 371

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL+ ++ E+VV  +L + P    L        +   +A  ++ EG +R  P  L
Sbjct: 372 LVYCTCSLEPEEGEQVVGALLDAEPGMRRL---PVEPAEVAGLAEIVTAEGDVRTLPSHL 428

Query: 421 EKIDGVSSGMDGFFAVALRR 440
              D   +G DGF+A  L +
Sbjct: 429 PHADPRLAGFDGFYAARLTK 448


>gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125]
 gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125]
          Length = 450

 Score =  289 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 113/462 (24%), Positives = 202/462 (43%), Gaps = 36/462 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  + R V+   L  + + +     LL+ +        L  RD  L+  +V  T++  
Sbjct: 1   MAAK-SVREVALETLVQIEKSQAYSNLLLNQKIK---QANLEPRDIGLLTELVYGTVQRQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  +   +     + +  ++ LLR+SV Q++YLD V  +A++  AV  AK+ + ++ 
Sbjct: 57  KTLDYYIASFVAKGKRKLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNIAKK-RGHKG 115

Query: 120 FAKLVNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            + LVN +LR + R+ +          +R+A     PEW  +R  + YG+E  ++I +  
Sbjct: 116 ISGLVNGVLRSMQRQGMPPFAAIEDKVKRLAVEYSYPEWLVKRWIDQYGEEETVSICEEM 175

Query: 173 ISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P  +   V     T    L         A         +     +I S   F +G   
Sbjct: 176 LLPPKVTARVNVRKRTVEEALERLEHEGVQATNGVLSDDAIVVDKGTITSTRLFQDGELT 235

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +         +LD CAAPGGK+  +   +     + +LD+ + +++ +  
Sbjct: 236 IQDESSMLVARAVAPRPGERILDACAAPGGKSTHMAERMDGEGTIVSLDMHRHKVKLIEE 295

Query: 282 NLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G IRR PD+ WT+   D+ 
Sbjct: 296 QAKRLGLDNIKAQTLDARKAREVFADEPFDRILVDAPCSGLGVIRRKPDIKWTKREADMK 355

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q  +L      VKPGG++++S C++D+ ++E+V+ + + +      +        
Sbjct: 356 AIRNVQLDILSSVAKLVKPGGLLIYSTCTIDQLENEQVIAEFMEAH-GEFSIDDTVLDRL 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +   A     EG + I P           G DGFF   L++
Sbjct: 415 PAAVQATCNIREGMVTILPHHF--------GTDGFFITCLKK 448


>gi|75674355|ref|YP_316776.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419225|gb|ABA03424.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi
           Nb-255]
          Length = 450

 Score =  289 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 173/442 (39%), Positives = 254/442 (57%), Gaps = 7/442 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+ AR +++ +L  V+ KR +L   L+        + L+ RD+ L+R +V   LR L 
Sbjct: 12  APGLAARRIAADILDGVLHKRRTLDEQLEGPTAHPGLKALADRDRALMRRLVATILRRLG 71

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +  +L  +L   +P      Q  L +  AQIL++DV D+A VDL+V   + D+    +A
Sbjct: 72  TLGHLLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYA 131

Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR +RE   L++ +   S   P W   R   +YG+    AI+ A      +DL
Sbjct: 132 GLVNAVLRRCAREGQSLIEEVRSESLDTPSWLMARWSGYYGEGTAKAIAAAISHEPALDL 191

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK +   WA +L+   LPTG +R   L  S+  LPGF+EG WWVQDA+A++P +LFG L
Sbjct: 192 TVKANAAHWATRLHGETLPTGTVR-TSLHGSVTMLPGFSEGQWWVQDAAAALPARLFGDL 250

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V+DLCAAPGGKTAQL+ +GA+VTA+D S  R+ +LR NL RL L A  ++      
Sbjct: 251 RGRRVIDLCAAPGGKTAQLVQAGAEVTAIDRSPNRVARLRENLGRLSLDARSLVADAIEW 310

Query: 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                   FD VLVDAPCS+TGTIRRHPDV W +   DI      Q++LL + I+ ++PG
Sbjct: 311 QDDVAGDGFDGVLVDAPCSATGTIRRHPDVAWLKQDSDIAALTALQQRLLNKAITLLRPG 370

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+  CSL+ ++ E+VV  +L  +   +  VP+++   +   +A  ++PEG +R  P 
Sbjct: 371 GTLVYCTCSLEPEEGEQVVAALLA-TDTGIRRVPVSAD--EVAGLADIVTPEGDLRTLPC 427

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
            L   D    G+DGF+A  L R
Sbjct: 428 HLAHDDPTLGGLDGFYAARLTR 449


>gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
          Length = 450

 Score =  289 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 116/465 (24%), Positives = 198/465 (42%), Gaps = 48/465 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++  +L  V R+ +     LD          LS  ++ L   +V   +R    +DA
Sbjct: 4   NPRQLAFIILREVERRGVYADIALDENLRK---ADLSAVNRRLTTELVYGCVRRRRSLDA 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++D        ++   L+ +L +   Q+ YL  +   A V+ +VE AK +      +  V
Sbjct: 61  LIDQFAQKKSHQQPPDLRIILHLGFYQLYYLSQIPASAAVNTSVELAKTN-GLSGLSGFV 119

Query: 125 NSILRRVSREKIELLQRIA--------------GISIIPEWFKERLENFYGKERVLAISD 170
           N ILR   R++ +  Q                  +   P+W  E   N  G E    +  
Sbjct: 120 NGILREYLRQQEKQTQNRPILRLEDENLIQTLGNLYSFPDWILEYWLNQLGLEETEKLCQ 179

Query: 171 ACISPLYIDLTVK---FDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAE 220
                  IDL +       +T   +L         +   +  +RL      I +LPG+ +
Sbjct: 180 WFNQSPTIDLRINALKTSRDTVETELKLAGINVTPIPHLSQALRLSGSIGEIQNLPGYRQ 239

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G W +QD+SA     +        ++D CAAPGGKT  +   +     + A D +K RL+
Sbjct: 240 GWWSIQDSSAQWVSHILDPQPGEIIIDACAAPGGKTTHIAELMQDTGTILAFDRAKSRLK 299

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           K++ N +RL L +      D  +        D VL+DAPCS  GT+ R  D  W     +
Sbjct: 300 KVQQNQERLQLKSITTQLADIRELSEYNSCADRVLLDAPCSGLGTLHRRADARWRHTQQN 359

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           + + +  Q +LL +  ++VKPGG +V++ C++   ++E ++Q  L  +      +P    
Sbjct: 360 VQELSELQTELLEKTATWVKPGGYLVYATCTIHPLENETIIQSFLSHNLNWEIDLP---- 415

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               I +   L+ EG++++ P            MDGFF V L+R+
Sbjct: 416 ---EIPLQDVLTSEGYLKVWPH--------RQNMDGFFIVKLKRI 449


>gi|169831743|ref|YP_001717725.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
 gi|169638587|gb|ACA60093.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 452

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/460 (25%), Positives = 192/460 (41%), Gaps = 38/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           ++AR ++ H+L  V          L+    +     L   D+     +   TLR L  +D
Sbjct: 4   VSAREIALHVLKAVEADGAYANLALNRALEEFRPSKL---DRAFATELAYGTLRTLNTLD 60

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++   L   L  +    + +LR+   Q+ Y+D V   A    AVE AK+       A+ 
Sbjct: 61  WIVSRYLQQPLGDQTVWSRNILRLGAYQLFYMDKVPAGAACFEAVELAKKY-GTPGTARF 119

Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR V+R K EL            I+     P W  +R     G E  +A+  A  +
Sbjct: 120 VNGVLRNVARHKDELQFPDPETDLVTHISLKYFHPTWLVKRWLTELGPEETIALCQANNT 179

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWV 225
                + V     D ++ A +L    L     R            S+ +LP F +G++ +
Sbjct: 180 IPPNTIRVNTLRVDRDSLAVRLEQEGLTVRKTRFAPEGLEIGGFVSMRALPSFQQGLFQI 239

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD S+ +          + +LD C+APGGKT  L   + +   + ALD+ + +L+ +  N
Sbjct: 240 QDESSMLVAHAVNPARGVRILDACSAPGGKTTHLAQLMENEGIIKALDIHQHKLKLVSDN 299

Query: 283 LDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
             RL +   +   +DA D     +   D VLVDAPCS  G +RR PD  W ++   I   
Sbjct: 300 CRRLGIDNVETELLDARDLPGEFEGWADFVLVDAPCSGLGVLRRRPDARWRKEPGQITGL 359

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L      V+ GG++V+S C++  +++   VQ  L   P  +     N   +  
Sbjct: 360 VRLQEAILAGAAQCVRAGGVLVYSTCTITYEENLGQVQSFLAHHPDFLLE---NLRPFLP 416

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +       G++ I P           GMDGFF   +RR
Sbjct: 417 AGLGEEQMARGYLEIFPH-------THEGMDGFFIARMRR 449


>gi|91975197|ref|YP_567856.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5]
 gi|91681653|gb|ABE37955.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5]
          Length = 450

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 172/441 (39%), Positives = 258/441 (58%), Gaps = 6/441 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+ AR +++ +L  V++KR +L   L+        + L  RD+ L+R +V   LR L 
Sbjct: 12  TPGLAARRIAADILDGVLQKRRTLDEQLEGPAAHPGLKTLPDRDRALMRRLVATILRRLG 71

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            ++ +L  +L   +P      +  L +  AQIL++DV D+A VDL+V   + D+    +A
Sbjct: 72  TLEHLLARMLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYA 131

Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR +RE   L++ +AG +  +PEW   R    YG++   AI+ A      +D+
Sbjct: 132 GLVNAVLRRCAREGQPLIEEVAGQALDVPEWLMARWRAHYGEDAAKAIAVAISHEPSLDI 191

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA +L   +LPTG +R   L  S+  LPGF +G WWVQDA+A++P +LFG L
Sbjct: 192 TVKSDPQHWAGRLYGELLPTGTVR-TLLQGSVKMLPGFEDGEWWVQDAAAALPARLFGDL 250

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAF 299
              SV DLCAAPGGKTAQL  +GA+V+A+D S  R+ +LR NL RL L A   + +   +
Sbjct: 251 AGKSVADLCAAPGGKTAQLAQAGARVSAIDRSPARVARLRENLARLSLEAETGVADATEW 310

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD VLVDAPC+STGTIRRHPDV W +   DI   +  Q +LL +  + +KPGG
Sbjct: 311 RSDAPGSFDGVLVDAPCASTGTIRRHPDVAWLKQESDIGALSAVQSRLLEKAAALLKPGG 370

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL+ ++ E+ + K+L + P  +  VP+  A  +   +A  ++P+G +R  P  
Sbjct: 371 TLVYCTCSLEPEEGEQAIAKLLAAEP-QMRRVPVEPA--EVAGLADIVTPQGDLRTLPSH 427

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           L   D   +G DGF+A  L +
Sbjct: 428 LPHADPRLAGFDGFYAARLTK 448


>gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 452

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 215/468 (45%), Gaps = 45/468 (9%)

Query: 1   MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M++ +   NAR ++  +L  + RK       L+     S    LS  D+ L   +V   +
Sbjct: 1   MRNKLSTSNARQLALKILLKIDRKNSYTDVALNRALNQS---NLSSSDRSLCTELVYGII 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
           R    +D+++D +      ++  +L+++L + + Q+ YLD +   A V+ +V+ AK +K 
Sbjct: 58  RHQRTLDSLIDQLGKKKAQQQPPNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKDNKL 117

Query: 117 NRHFAKLVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVL 166
            +  + +VN ILR+  R        +          A     P+W  E     +G+E   
Sbjct: 118 -QRLSGVVNGILRQYIRSIQGNHDPLILPNDTLKKLAIQYSFPDWIIETWLQKWGEETTE 176

Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLP 216
            +         ID+ V     ++ET   +L +              +RLK    +I +LP
Sbjct: 177 KMCHWFNQSPNIDIRVNPLKTNLETLQTQLTSAGVNVTPLGRFPCALRLKGKIGTIPTLP 236

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
           GF++G W VQD SA +           +++D CAAPGGKT  +   +     + A D + 
Sbjct: 237 GFSQGHWTVQDTSAQLVSYFLDPQPGETIIDACAAPGGKTTHIAELMGDQGTIFACDRTP 296

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            RL+K++ N  RL L   + +  D+          D VLVD PCS  GT+ RHPD+ W +
Sbjct: 297 SRLKKVQENAQRLELNCIETVVGDSRYLQQFINKGDRVLVDVPCSGLGTLHRHPDIRWRQ 356

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             ++I +    Q ++L Q   +VKP G +V+S C+L+  +++E++Q  L +     ++ P
Sbjct: 357 TPENIRELTSLQLEILNQAAQWVKPQGTLVYSTCTLNPPENQEIIQTFLSTHSHW-KIEP 415

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            N  +      +  ++   WI++ P   +         DGFF V L++
Sbjct: 416 PNPHWA----FSPFVTSSQWIQMLPHKQDS--------DGFFMVKLKK 451


>gi|49476251|ref|YP_034292.1| SUN protein (Fmu protein) [Bartonella henselae str. Houston-1]
 gi|49239059|emb|CAF28362.1| SUN protein (FMU protein) [Bartonella henselae str. Houston-1]
          Length = 447

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 200/445 (44%), Positives = 275/445 (61%), Gaps = 9/445 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R VS  LL  V+ K+ SL+ L D EYG   +  LSQRD++L RAI+   LR   +
Sbjct: 7   PGLAVRQVSVRLLGVVLDKKTSLSGLTDNEYGHPQYLGLSQRDRLLCRAILAAALRHRGQ 66

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I   L   L   LP +  SLQ LL +S AQILYLD+ D+A +DLAV  AK D     F+ 
Sbjct: 67  ITDALRRFLKRPLPSQALSLQHLLHISAAQILYLDIPDHAAIDLAVRVAKLDPRMCRFSG 126

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            VN++LR V+RE + L Q+   I  IP WF + L + YGKE+   I +   +P  +DLTV
Sbjct: 127 GVNALLRNVAREAVFLRQKAPHIEGIPVWFGQLLVSTYGKEKTEQILEIQSAPPPLDLTV 186

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  V+LP G +RL  L  S+  LPG+ EG WW+QD +AS+P  L G ++ 
Sbjct: 187 KSDSRGWAERLGGVVLPNGSVRLSRLEGSVSELPGYMEGAWWIQDFAASLPACLLGNIHG 246

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V DLCA+PGGKTAQL + GA VTA+++S  RL++L+ N++RLH       E D  ++ 
Sbjct: 247 KQVADLCASPGGKTAQLALQGADVTAIELSANRLKRLKENMERLHFS-VRCCEGDVKNFH 305

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           PK+LFDAVL+DAPCSSTGTIRRHPD+LWT+  +D++K A  Q  LL+  I+ +K GG +V
Sbjct: 306 PKQLFDAVLLDAPCSSTGTIRRHPDILWTKSMNDVIKLAALQYDLLVAAIALLKKGGRIV 365

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           FSNCSL K++ E+++ ++L      + L P+ +   +   MA  LS EG +R TP     
Sbjct: 366 FSNCSLAKEEGEDLITRILSER-GDIVLEPILAE--EMGVMAHLLSVEGILRTTPADFCH 422

Query: 423 IDGVSS-----GMDGFFAVALRRLI 442
            +  +      GMDGFFA  LR++ 
Sbjct: 423 ENFDAEKNIFLGMDGFFAARLRKVA 447


>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
 gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
 gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
 gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
 gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
 gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
 gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
          Length = 455

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 204/468 (43%), Gaps = 40/468 (8%)

Query: 1   MKSGM-NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M++ +   R  +  +L  +  K       L+       F  +   D+  +  IV  TL++
Sbjct: 3   MRTKVDKVRETALKILYDINEKGAYSNISLNKYLNGQEFESI---DRAFITDIVYGTLKW 59

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              ID +++      + +    +  +LR+ + Q++Y D +  +A  + +V+ A +   + 
Sbjct: 60  QYTIDYLIEKFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAKY-GHA 118

Query: 119 HFAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
             +K VN++LR                +    ++     P W  +   + +G+E    + 
Sbjct: 119 ASSKYVNAVLRNIARNKENLPYPDRNNDTAHYLSVKYSHPVWMVKDWLDCFGEEFTEGLL 178

Query: 170 DACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAE 220
            A        + V     +    ++                   +   P ++  +  FA+
Sbjct: 179 KANNEVAPFTVRVNDLKISKKELVDILTKDGFEVENGKYLDEALIIRNPSAVQKMDAFAK 238

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G + VQD S+ +  ++       ++LD+C+APGGK+  +   + +   V + D+ + +++
Sbjct: 239 GYFQVQDESSMLVAKVLDPKPGETILDVCSAPGGKSTHIAQIMKNRGTVISRDIHEHKIK 298

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            +    +RL L        DA     K  +  D VLVDAPC+  G IRR PD+ W+++++
Sbjct: 299 LIEQAKERLGLEIIKTEVFDAAVLDGKLIEKIDRVLVDAPCTGFGIIRRKPDIKWSKNSE 358

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D  +    Q K+L     +VK GG++V+S C+L+ +++E+ V++ +  +     L  +  
Sbjct: 359 DKAEIVSLQHKILSTASKYVKDGGVLVYSTCTLEPEENEKAVERFIEENKDFY-LEDITE 417

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
               ++    A   +G+I++ P++         G+DGFF   +R+  +
Sbjct: 418 FLPDALRKESA--GKGYIQLYPNI--------DGIDGFFIARMRKRSK 455


>gi|92115829|ref|YP_575558.1| Fmu (Sun) [Nitrobacter hamburgensis X14]
 gi|91798723|gb|ABE61098.1| Fmu (Sun) [Nitrobacter hamburgensis X14]
          Length = 450

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 172/441 (39%), Positives = 245/441 (55%), Gaps = 7/441 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ +L  V+ K  +L   L+        + L+ RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADILDGVLHKHRTLDEQLEGAAAHPGLKALADRDRALMRRLVATILRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  VL  +L   +P      Q  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LGHVLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132

Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE    + +  +    IP W   R    YG+    AI+ A      +DLT
Sbjct: 133 LVNAVLRRCAREGQPLIDEVRSEALDIPPWLMTRWIANYGENTAKAIATAISHEPSLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK     WA +L+  +LPTG +R   L   +  LPGF+EG WWVQDA+A++P +LFG L 
Sbjct: 193 VKAGAAQWATRLHGEVLPTGTVR-TALQGPVTMLPGFSEGRWWVQDAAAALPARLFGDLQ 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR--LHLYAEDIIEMDAF 299
              V DLCAAPGGKTAQL  +GA+VTA+D S  R+ +LR NL R  L   A     ++  
Sbjct: 252 GRRVADLCAAPGGKTAQLAQAGAEVTAIDRSPNRVARLRDNLGRLSLGARALVADAVEWQ 311

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
           D      FD VLVDAPCSSTGTIRRHPDV W +   DI      Q++LL +  + +KPGG
Sbjct: 312 DDAAGSGFDGVLVDAPCSSTGTIRRHPDVAWLKQDSDIAALTALQKRLLQKAFALLKPGG 371

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL+ ++ E +V  +L S    V  VP+ +A    ++    ++P G +R  P  
Sbjct: 372 TLVYCTCSLEPEEGEHLVGALLAS-EAGVRRVPIGAAEVAGLE--DIVTPAGDLRTLPCH 428

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           L   D   SG+DGF+A  L +
Sbjct: 429 LPHDDPRLSGLDGFYAARLIK 449


>gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01]
          Length = 455

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 206/470 (43%), Gaps = 43/470 (9%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK       +R+ ++ +L  +      L  +LD          L+++D+ LV A+V   L
Sbjct: 1   MKPPAGKDKSRITAARILDRLESGDQVLDVVLDRALDKEP--GLTRKDRALVMALVYGVL 58

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
           R   RID ++     + L + +  +  +LR+ V Q+L+LD V     VD +VE AK+   
Sbjct: 59  RNRGRIDWIISSFSKTKLKKIQPEILNILRMGVFQLLFLDRVPPALAVDSSVEMAKK-AA 117

Query: 117 NRHFAKLVNSILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
               +K VN +LR V              + L+ I      PEW  +R    +G E  L 
Sbjct: 118 PVFVSKFVNGLLRNVERKGRGLQLPDFAKDPLKAICVAESYPEWMVKRWIKRFGAEETLE 177

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----------ESIVSLPG 217
           +  A      I + V     T     + +      + L + P            +  LPG
Sbjct: 178 LCKAGNRIAPITIRVNSLAATRDEAADEIRDQVKNLELHDWPPMALSFSAPLVPVFELPG 237

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274
           F+EG + VQDA++ +            VLD CA  G KT+ +   + +  ++ A D+   
Sbjct: 238 FSEGKFSVQDAASQMTALCLDPRPGEKVLDACAGLGSKTSHIAQLMENTGEILAADLEPG 297

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTR 332
           +L+KL   + RL +       +D       +   FD VLVDAPC+  G IRR+PD  W++
Sbjct: 298 KLKKLEEEMARLKVSIVKTHALDFTRELSLEPQGFDKVLVDAPCTGLGVIRRNPDSKWSK 357

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             + I K A  Q  +L +    V+PGG++++S CS++ ++++ V++  LR++        
Sbjct: 358 TLNSIHKHAKLQGMILSRAAELVRPGGLILYSVCSMEPEETDGVIKAFLRNNEDFT---- 413

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           L  +          L  +G +R  P           GMDGFFA  +RR  
Sbjct: 414 LEPSPLPKDGDQTMLDEQGCMRTFPH--------RQGMDGFFAARMRRRA 455


>gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
           UCYN-A]
 gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
           UCYN-A]
          Length = 453

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 216/465 (46%), Gaps = 43/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   NAR +   +L  + +    +   LD  +  +    LS++D+ L   +V   +R  
Sbjct: 1   MKVS-NARQLVLKILREIDKNNSFINISLDSAFKHN---ELSRQDRGLCTELVYGIIRCQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D+++D +      ++   L+++L + + Q+LYLD V   A V+ +V+ AK +  N  
Sbjct: 57  RTLDSLIDQLGNKKSQKQSPVLRRILHIGLYQLLYLDHVPLSAAVNTSVDLAKNNNLN-V 115

Query: 120 FAKLVNSILRRVSREKIELLQR----------IAGISIIPEWFKERLENFYGKERVLAIS 169
            +K+VN+ILR   R K +   +           A     P W  +     +G +  + + 
Sbjct: 116 LSKVVNAILREYIRVKKKENCKLILSKDFVNTTAIKYSFPNWIVKNWYQQWGGDTSVKLC 175

Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219
                   ID+ V    +T              +  +      +RLK     I +LPGF 
Sbjct: 176 YWFNQSPTIDIRVNVLGKTTQEIKNELIMANVNVEYLPHLPCSLRLKGQTGDIKNLPGFI 235

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276
           +G W VQD SA +   L       +V+D CAAPGGKT  +   +     + A D    RL
Sbjct: 236 KGDWTVQDISAQLVSYLLDPKIGETVIDACAAPGGKTTHIAELMRDKGLILACDRISSRL 295

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            K++ N++RL L +  +++ D+          D VLVDAPCS  GT+ R+PD+ W +  +
Sbjct: 296 TKIQQNIERLKLRSIKLVKGDSRYLQQFNNFADRVLVDAPCSGLGTLHRNPDIRWRQTPE 355

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I + +  Q+++L +   +VKP G++V+S C+L+  ++E +V   L+++P      PL S
Sbjct: 356 KIKQLSIIQQEILDKASKWVKPNGVLVYSTCTLNVSENETIVCNFLKNNPEWNIEKPLFS 415

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +        ++  GW++  P            MDGFF V LR+
Sbjct: 416 KLFSP-----FITSSGWLQTLPH--------EHNMDGFFMVKLRK 447


>gi|110635746|ref|YP_675954.1| Fmu (Sun) [Mesorhizobium sp. BNC1]
 gi|110286730|gb|ABG64789.1| Fmu (Sun) [Chelativorans sp. BNC1]
          Length = 460

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 201/439 (45%), Positives = 266/439 (60%), Gaps = 5/439 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G++AR  ++ LL+ V+  R  L  L D E+G   +  L QRD+ LVRAI+   LR   
Sbjct: 26  KPGLDARRTAAKLLAAVIDARTPLDALTDNEHGHPQYLSLEQRDRALVRAILISALRHRC 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+ ++   L   LP   +SL  +L V  AQIL+LDV D A VDLAV QAK D     F+
Sbjct: 86  TIEKLVGRRLDRPLPPNAHSLSHILHVGAAQILFLDVPDSAAVDLAVTQAKADPRAARFS 145

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LR ++R K EL + +      P WF ERLE  YG ++  AI  A       D T
Sbjct: 146 GLVNAVLRNLARRKHELPKALENTRDAPAWFAERLEAVYGHDQTDAILKAHRLEAPTDFT 205

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           V+ D   WA +L   +LP G +RL  LP  I  LPGFAEG WWVQDA+AS+P +L G + 
Sbjct: 206 VRSDPALWAERLGGRVLPNGSVRLDRLPSPIPELPGFAEGAWWVQDAAASLPARLLGDVE 265

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            L V DLCAAPGGKTA L + GA V+A+D+S  RL++L+ NLDRL L AE + + D   +
Sbjct: 266 GLFVADLCAAPGGKTAALALEGAWVSAVDISASRLKRLKANLDRLGLSAEIV-QADVLSW 324

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P++ FDAVL+DAPCSSTGT+RRHPDV WT+  +DI K A  QR+LL + ++ + P GIV
Sbjct: 325 EPERKFDAVLLDAPCSSTGTVRRHPDVPWTKTPEDIAKLADLQRRLLERALTLIHPSGIV 384

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD  + EE+V+ VL      + L P+        +    ++ EG++R TP    
Sbjct: 385 VFSNCSLDPSEGEELVRDVLGK-QAGIALDPILPEELPGAE--HFVTAEGFLRTTPAHFG 441

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  G+DGFFA  LRR
Sbjct: 442 TES-QLDGIDGFFAARLRR 459


>gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Paenibacillus
           polymyxa E681]
 gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Paenibacillus
           polymyxa E681]
          Length = 471

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 204/459 (44%), Gaps = 39/459 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +L  V ++       L+          LS  D  L   +V  T+     +D  
Sbjct: 27  AREVALDVLIGVEQEGAYSNLELNRRLQ---QAGLSASDAGLATELVYGTVARRNTLDYF 83

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L+  +     + +  ++ LLR+SV Q++YLD V D+AVV  AV  AKR + ++  + +VN
Sbjct: 84  LNKFVQKGTAKLQAWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIAKR-RGHQGISGMVN 142

Query: 126 SILRRVSREKIE--------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +LR + RE  +          +RI+     P+W  +R    YG +   AI  A   P  
Sbjct: 143 GVLRSMLREPDKLRIPDDLSPEERISLEHSHPQWLVKRWIKQYGADTAEAICQANNEPPA 202

Query: 178 IDLTV---KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V       +    ++N+  L       +    +     ++     + +G+  VQD 
Sbjct: 203 VSVRVNTTMTSRDQLLDEMNSKGLDAVPSAVSPYGIVVRSGGNMALTSWYTDGLLSVQDE 262

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +       + VLD CAAPGGKTA +   +    ++ A D+   + + +R   +R
Sbjct: 263 SSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELMKDHGRIVANDLHAHKHQLIREQANR 322

Query: 286 LHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L A + +  DA +   +     FD +L+DAPCS  G IRR PD+ W++   D+     
Sbjct: 323 LGLDAVETVTGDALELKERYAPASFDRILLDAPCSGFGVIRRKPDLRWSKTAQDVRDITQ 382

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL      +KPGGI+V+S C+++  ++E  + + L   P   E        +  ++
Sbjct: 383 LQHELLDSVAGLLKPGGILVYSTCTIEPDENEGQLTQFLSEHP---EYEWAEGHSFPDVN 439

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   G +++ P             DGF+   LRR+
Sbjct: 440 REKDSIQGGSVQLLPQHF--------HSDGFYIARLRRV 470


>gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus
           polymyxa SC2]
 gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus
           polymyxa SC2]
          Length = 471

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 205/459 (44%), Gaps = 39/459 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +L+ V ++       L+          LS  D  L   +V  T+     +D  
Sbjct: 27  AREVALDVLTGVEQEGAYSNFELNRRLQ---QAGLSASDVGLTTELVYGTVARRNTLDYF 83

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L+  +     + +  ++ LLR+SV Q++YLD V D+AVV  AV  AKR + ++  + +VN
Sbjct: 84  LNKFVQKGTAKLQPWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIAKR-RGHQGISGMVN 142

Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +LR + RE  +L            +     P+W  +R    YG +   AI  A   P  
Sbjct: 143 GVLRSMLREPDKLRIPDGLSAEERISLEHSHPQWLVKRWIKQYGVDTAEAICKANNEPPA 202

Query: 178 IDLTV---KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V       +    ++ A  +       +    +     ++     + +G+  VQD 
Sbjct: 203 VSVRVNTTMTSRDQLLDEMVAKGIDAVPSPVSPYGIVVRSGGNMALTSWYTDGLLSVQDE 262

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +       ++VLD CAAPGGKTA +   +    ++ A D+   + + +R    R
Sbjct: 263 SSMLVAEAVAPEPGMTVLDCCAAPGGKTAHMAELMKDRGRIVANDLHAHKHQLIREQASR 322

Query: 286 LHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L A + +  DA D   +     FD +L+DAPCS  G IRR PD+ W++  +D+     
Sbjct: 323 LGLDAVETVTGDALDLKERYAPASFDRILLDAPCSGFGVIRRKPDLRWSKTAEDVRDITQ 382

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL      +KPGGI+V+S C+++  ++E  + + L   P   E        +  ++
Sbjct: 383 LQHELLDSVAGLLKPGGILVYSTCTIEPDENEGQLARFLSEHP---EYELAKDHSFPDVN 439

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             M    +G +++ P             DGF+   LRR+
Sbjct: 440 HEMDGIQKGSVQLLPQHF--------HSDGFYIARLRRV 470


>gi|222150167|ref|YP_002551124.1| Sun protein [Agrobacterium vitis S4]
 gi|221737149|gb|ACM38112.1| Sun protein [Agrobacterium vitis S4]
          Length = 493

 Score =  286 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 215/448 (47%), Positives = 295/448 (65%), Gaps = 11/448 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR+ +S LL+ V+ ++ SL  ++D ++G+ A+  LS+ D+ LVRAI+N +LRFLP
Sbjct: 49  KPGLEARMAASRLLAAVIDRKTSLDGMMDGDHGNPAYAALSEADRGLVRAILNTSLRFLP 108

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RI+A+L  +L + LP    +L   L V+ AQ++YLDV D++ VDLAVEQA RD  +R FA
Sbjct: 109 RIEAMLARLLDAPLPDGARALYHSLIVAAAQMVYLDVPDHSAVDLAVEQANRDPRSRRFA 168

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           KLVN++LRR+ REK  LL  +  +  +P+WF ERL   YG+E    I+ A ++P  IDLT
Sbjct: 169 KLVNAVLRRLGREKQALLADVEDVICMPDWFFERLIAVYGEEEARRIAQAQLTPAAIDLT 228

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA KLN V+LPTG IRL     ++ +LPGF EG WWVQDA+A++PV++FG+L 
Sbjct: 229 VKADPAVWAEKLNGVVLPTGSIRLASFAGAVSALPGFEEGAWWVQDAAAALPVRMFGSLE 288

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299
               +DLCAAPGGKTAQL  +GA VTA++ S  RL++L  NL RL   A+ + +  M+  
Sbjct: 289 GKRAVDLCAAPGGKTAQLAAAGAVVTAVEQSANRLKRLNGNLQRLGFSAQLVHQDLMEFN 348

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPCSSTGT RRHPDV +T+   DIVK A  Q +LL   ++ + PGG
Sbjct: 349 LGEDHPGFDAVLLDAPCSSTGTTRRHPDVFYTKGPQDIVKLAGVQERLLRHAVTLLAPGG 408

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--- 416
            +VFSNCSLD Q+ E+VV +VL   P  +E V +  A W  ++ A  ++P G  R T   
Sbjct: 409 SIVFSNCSLDPQEGEDVVARVLADHP-ELERVAMQVADWPGLEDA--ITPLGEFRTTPAM 465

Query: 417 ---PDMLEKIDGVSSGMDGFFAVALRRL 441
              P ML   D  + G+DGF+A  LRR+
Sbjct: 466 LPGPAMLPGGDSHAGGLDGFYACRLRRV 493


>gi|220928955|ref|YP_002505864.1| sun protein [Clostridium cellulolyticum H10]
 gi|219999283|gb|ACL75884.1| sun protein [Clostridium cellulolyticum H10]
          Length = 449

 Score =  286 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 103/457 (22%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  +          ++    +   R +   D+     +V  T+++L +ID V
Sbjct: 6   ARETALKILYDITENHAYSNISVNRHLENDKLREI---DRSFATELVYGTVKWLLQIDYV 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L       L +    ++ +LR+ + Q+L+ D +   A  +  VE AKR   ++  ++ VN
Sbjct: 63  LGKYSSVKLKKLSPWIKNILRLGIYQLLHTDRIPVSAACNTGVELAKRY-GHQASSRFVN 121

Query: 126 SILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           ++LR            +K + +  ++ +   P W  E+    YG E    +  +      
Sbjct: 122 AVLRNIAKSKNNIPYPDKSDNVNYLSILYSHPVWMVEKWIELYGTEFTEELLKSNNQVPD 181

Query: 178 IDLTVK---FDIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             +       D  T    L+                + + P SI +L  F  G + VQD 
Sbjct: 182 FIIRTNTLKTDRVTLLDMLHKEGISAEPGRYIEEAVILKSPSSITNLEVFKNGYFQVQDE 241

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  ++       +V+D+C+APGGK   +   + +   + A DV + +L+ +  +  R
Sbjct: 242 SSMLAAKILDPKEGETVIDVCSAPGGKATHMAQLMNNKGTIIARDVYQHKLKLIEQSCCR 301

Query: 286 LHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +        DA           D VL+DAPCS  G IR+ PD+ ++R   ++ +    
Sbjct: 302 LGIDIIKTEIHDACCLDETFTGKADRVLIDAPCSGLGIIRKKPDIKYSRTEKELREITGL 361

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR++L     ++KPGG +++S C++ ++++ ++V   L  +P    L         ++D+
Sbjct: 362 QREILKNSSKYLKPGGYLLYSTCTIQQEENLDIVSDFLEDNP-DFRLTGFQELMPPTLDI 420

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           A   S EG+I++ P++ +         DGFF   ++R
Sbjct: 421 AS--SAEGYIQLFPNINQ--------TDGFFISKIKR 447


>gi|90421014|ref|ZP_01228918.1| putative ribosomal RNA methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334792|gb|EAS48568.1| putative ribosomal RNA methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 472

 Score =  286 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 202/442 (45%), Positives = 269/442 (60%), Gaps = 6/442 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARLV++ LLS ++  R S   LLD   G   FR L  RDQ LV+AI+   LRF  
Sbjct: 35  RPGLGARLVATKLLSAIVDARTSADGLLDAAGGHPGFRALEGRDQGLVKAIILSALRFRG 94

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I   LD  L   LP    +L+ +L V   QIL+LDV D A VDLAV  A  D  +R FA
Sbjct: 95  TISRALDACLDRPLPPNAAALKHILHVGATQILFLDVPDSAAVDLAVAAANVDSRSRRFA 154

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            ++N++LRR+SREK  L +       +P+W   R+   YG ER  AI+ A ++P  +DLT
Sbjct: 155 GMINAVLRRLSREKDALREVATATENMPDWLAARMVAAYGPERTEAIARAHLTPAPLDLT 214

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA KL  V LP G +RL      + +L GFAEG WWVQDA+A++P QLFG L 
Sbjct: 215 VKRDPAGWAGKLGGVALPNGTVRLGSFDGPVTALEGFAEGEWWVQDAAAALPAQLFGDLT 274

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V DLCAAPGGKTAQLI +G  VTALD++  R+++L+ NL RL L AE +   D   +
Sbjct: 275 GKRVADLCAAPGGKTAQLIAAGGAVTALDINANRMKRLKANLARLSLEAETV-VGDIAAF 333

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P + FDA+L+DAPCSSTGTIRRHPDV +T+D ++I K A  Q +LL + +  + PGG +
Sbjct: 334 EPAEPFDAILLDAPCSSTGTIRRHPDVPYTKDAEEIAKLAGVQARLLGEAVRLLAPGGRL 393

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML- 420
           VFSNCSLD  + E +V  +L      V   P+       ++ A  L+PEG +R TPDM+ 
Sbjct: 394 VFSNCSLDPAEGEAIVAALLTDRSDIVR-DPVQPGELPGMEFA--LTPEGDLRTTPDMMG 450

Query: 421 -EKIDGVSSGMDGFFAVALRRL 441
                  + G+DGF+A  L+R+
Sbjct: 451 GAADAPATGGLDGFYAARLKRI 472


>gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942]
 gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942]
          Length = 451

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 125/461 (27%), Positives = 196/461 (42%), Gaps = 42/461 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  NAR V+   L+ + R+       LD     S    L   D+ LV  +V   +R    
Sbjct: 5   SRGNARWVAFQTLTTI-REGAFADLALDRHLQRS---GLVGADRRLVTELVYGCVRRQRT 60

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +DA++D +      ++   L+ +L++ + Q+ YL+ +   A V   V+ AK+       +
Sbjct: 61  LDALIDLLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETVQLAKQLGLG-GLS 119

Query: 122 KLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDAC 172
             VN+ILR+  R+  E              A     P+W  +   +  G +    +    
Sbjct: 120 GAVNAILRQYLRQSEERDPLPLPSDPIAALAIHQSFPDWLVQLWSDRLGLDEAEFLCHWF 179

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGV 222
             P  IDL +     +       L AV +           +RL + P  I  LPGF EG 
Sbjct: 180 NQPPSIDLRINPLRTERSQVQAALEAVGIRSTPDPQLPQALRLIDPPGPIRQLPGFDEGW 239

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           W VQD+SA +   L       +VLD+CAAPGGK+  L   +    +V A D S +RL K+
Sbjct: 240 WMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGDRGQVIACDSSAKRLRKV 299

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           + N  RL L +     +D          D +LVDAPCS  GT+ RH D  W +  D + +
Sbjct: 300 QENAQRLQLSSITTRAIDGRQI-KGIQADRILVDAPCSGLGTLHRHADGRWRQSPDSVAE 358

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  Q ++L    + +KP G +V++ C+L   ++E V+++ L+  P         +    
Sbjct: 359 LAQLQSEILDAAAACLKPAGTLVYATCTLHPAENEAVIEQFLQRHPDWQM-----APLAA 413

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      G +RI P             DGFF   L+R
Sbjct: 414 DSPFQAWAEANGTLRIWPH--------RHDRDGFFGARLQR 446


>gi|39933110|ref|NP_945386.1| Sun/ nucleolar Nop1/Nop2 [Rhodopseudomonas palustris CGA009]
 gi|39652735|emb|CAE25474.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Rhodopseudomonas
           palustris CGA009]
          Length = 450

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 172/441 (39%), Positives = 254/441 (57%), Gaps = 8/441 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ +L  V++KR  L   L+        + LS RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ +L  +L   +P      +  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LEGLLAKLLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132

Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE    + +  AG   +P+W   R    YG E   AI+ A      +DLT
Sbjct: 133 LVNAVLRRCAREGQPLVEELAAGTPDVPQWLLARWSEHYGAETTRAIAHAISHEPSLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA +L+  +LPTG +R   L  S+  LPGF EG WWVQDA+A++P +LFG + 
Sbjct: 193 VKSDPAHWAARLHGEVLPTGTVR-TLLQGSVRMLPGFDEGQWWVQDAAAALPARLFGDIA 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             SV DLCAAPGGKTAQL  +GA+VTA+D S  R+ +LR NL RL L   +    DA ++
Sbjct: 252 GKSVADLCAAPGGKTAQLAAAGARVTAIDRSPARVARLRENLARLSLK-VETGVADAAEW 310

Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPC+STGTIRRHPDV W +   DI   A  Q +LL +  S ++PGG
Sbjct: 311 RGDATAEFDAVLIDAPCASTGTIRRHPDVAWLKQESDIGALAAVQNRLLKKAASLLRPGG 370

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL+ ++ E+ +  +L +    +   P++ A  +   +A  ++ +G +R  P  
Sbjct: 371 TLVYCTCSLEPEEGEQAIAALLDA-ESSMRRQPIDPA--EVAGLAEIVTTDGALRTLPCH 427

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           L   D   +G+DGF+A  L +
Sbjct: 428 LPHSDPRLAGLDGFYAARLVK 448


>gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya
           majuscula 3L]
 gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya
           majuscula 3L]
          Length = 477

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 126/483 (26%), Positives = 205/483 (42%), Gaps = 64/483 (13%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   L  + R+       L+    +     L+  D+ LV  +V  ++R    +DA
Sbjct: 13  NPRQLAFLALRDIHRRGAFADIALNRVLHN---AQLTGADRGLVTELVYGSVRRQRTLDA 69

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +LD +      ++   L+ +L + + Q+ Y   +   A V+  V+ AK +   +  A +V
Sbjct: 70  LLDQLGKKKANQQPPDLRTILHLGLYQLRYQGRIPASAAVNTTVDLAK-NNGFKGLAGVV 128

Query: 125 NSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           N +LR  +R               ++R+  +   P+W  E      G E    +      
Sbjct: 129 NGLLRNYARLAANSPDPLELPAGDMERLGILHSFPDWMIELWLQQLGLEETEQLCQWFNQ 188

Query: 175 PLYIDLTVKF---DIETWAHKLNAV----------------------------MLPTGGI 203
              IDL +      IE     + +                                   +
Sbjct: 189 SPTIDLRINPLKVSIEEVEAGMQSAELAIQRVPTLVSHQDEGNGEIIPMFSNPAQLPQAL 248

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260
           R+     +I  LPGF EG W VQD SA +   L        V+D CAAPGGKT  +   +
Sbjct: 249 RIVGGVGAIQELPGFKEGWWTVQDCSAQLVSYLLDPQPGDVVIDACAAPGGKTTHIAELM 308

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSST 319
               K+ A D S  RL+K++ N  RL L +  I   D+ D      + +AVL+DAPCS  
Sbjct: 309 ADQGKIWACDRSASRLKKVQQNAQRLELQSIQISTGDSRDCPEFTNVANAVLLDAPCSGN 368

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+ R PD+ W    + + +    Q++LL    ++VKPGG++V++ C+L+ Q++E V+Q 
Sbjct: 369 GTLHRRPDIRWRMTPEKVQELTVLQKELLEHTATWVKPGGVLVYATCTLNPQENEAVIQW 428

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            L          P  S       +    +PEGW+++ P            MDGFF V L+
Sbjct: 429 FLEGHSQWQIEPPTVSF------LKEFSTPEGWLKVVP--------YRDQMDGFFMVRLK 474

Query: 440 RLI 442
           R+I
Sbjct: 475 RMI 477


>gi|83589751|ref|YP_429760.1| sun protein [Moorella thermoacetica ATCC 39073]
 gi|83572665|gb|ABC19217.1| sun protein [Moorella thermoacetica ATCC 39073]
          Length = 457

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 111/466 (23%), Positives = 190/466 (40%), Gaps = 37/466 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K  ++AR  +  ++  V  +       LD          L  R++ L   +    ++   
Sbjct: 5   KPAVSAREAALQVIYRVTEEGAYAGLALDEVLKS---AGLDGRERALATELAYSAIKAWG 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  L   L   L +    ++ +LR+   Q+LY   +   A +   VE AK+   +R  
Sbjct: 62  TLDWALGLFLRQPLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKY-GHRGT 120

Query: 121 AKLVNSILRRVSREKIELLQRIAG---------ISIIPEWFKERLENFYGKERVLAISDA 171
             LVN +LR + R+K  L                   P W  ER    +G +    +  A
Sbjct: 121 TGLVNGVLRHLDRQKDALPYPDWKTDPAGYLALRYYHPRWLVERWLEEFGYQETEYLCRA 180

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGV 222
              P      V       +  A +L A        R      + E   ++ + P F EG+
Sbjct: 181 DNEPPPTIARVNTLKTRKDVLAARLQAEGATVRPARYAPEGLVVEGLGALEASPSFQEGL 240

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           ++VQD  + +        +   V+D  AAPGGKT  L   +     + A DV + RL+ +
Sbjct: 241 FYVQDEGSQLVSHALHPDSGAWVIDASAAPGGKTTHLAQLMADRGTILACDVHRGRLDLI 300

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N  RL +     + +DA +   +     D +L+DAPCS  G +RR PD  W ++    
Sbjct: 301 AANCRRLGVTCVRTVLVDARELGERYPAAADYLLIDAPCSGLGVLRRRPDARWRKEAPRT 360

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + A  Q  +L+     +KPGG++V+S C+L  ++++EVV++ L  +        L    
Sbjct: 361 RELARLQLAILMGARQALKPGGVLVYSTCTLLPEENQEVVREFLERA-GEFRPDSLEPWL 419

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  M  + +GW++  P           G DGFF   +++L +
Sbjct: 420 PVLPPDLMVTARQGWVQFLPQ--------RHGTDGFFIARIKKLEK 457


>gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4]
 gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4]
          Length = 452

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/460 (25%), Positives = 194/460 (42%), Gaps = 40/460 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V  +       L    G    +     ++ L+  +   TLR L  ID V
Sbjct: 4   ARELALKVLYAVDVEGAYGNLALTSVMGKYRPQG---PERSLLTELCYGTLRRLNTIDWV 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +   L  +   ++ +LR++V QILYLD +   A  + AVE AK+       A  VN
Sbjct: 61  LAKFIKRPLCEQNPWIRNILRLAVYQILYLDRIPPAAATNEAVELAKKY-APPSMAGFVN 119

Query: 126 SILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           ++LRR             +   +  +A     P W  E     +G E  + I +A   P 
Sbjct: 120 AVLRRVVREKDNLTFPDIRTNPVDHLALKYSHPTWLVEMWLKEFGLEETIRICEANNQPA 179

Query: 177 YIDLT---VKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQ 226
              L    ++   E    +L           L             +  LP + EG++++Q
Sbjct: 180 AATLRTNLLRTTREELMERLRREADLRVSPTLYAPEGIRVQGFFDLQHLPSYQEGLFYIQ 239

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +        +   VLD+C APGGK      L+    ++  +D+   RL  +  N 
Sbjct: 240 DESSMLAAHALAPASGSFVLDVCGAPGGKATHLAELMRDSGRILVVDIYAHRLALVVANS 299

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL L + + ++ DA     +     D VL D PCS  G +RR PD+ W ++ +      
Sbjct: 300 RRLGLKSVETLQADARSLDQQFAGQADYVLADVPCSGLGVLRRKPDIRWRKEPEIFPGLV 359

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+++L    + V+PGG++++  C+L + ++   +++ L   P  + L  L     +++
Sbjct: 360 TLQQEILESAAACVRPGGVLLYCTCTLGEAENLGQIKRFLSRHPDFL-LEDLRPFLPEAL 418

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           D    L   G+I+I P           GMDGFF   LRR 
Sbjct: 419 DREGTL-RHGYIQIMP---------YQGMDGFFIARLRRK 448


>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
 gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
          Length = 448

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 114/464 (24%), Positives = 190/464 (40%), Gaps = 38/464 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R  +   +  V  +      +L+  +       L+ +D+ L   ++  +LR  
Sbjct: 1   MTK--NGRQTAVEAVYRVNEEGAYSNLILNHLFKKY---NLADQDRGLATELIYGSLRMR 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L+      + +     + +LR+ + QI +LD + D    +  VE AK  + +  
Sbjct: 56  NHLDWILNQFADRRVNKMDKWTRNILRLGLYQIRFLDSIPDAVACNETVELAKDYQ-HSG 114

Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN ILR            + K   +Q I      P+W  E     YG E  + I  
Sbjct: 115 AAGFVNGILRSILRSLDEIEFPQLKSNPVQHIRYKYSFPQWMVETWVKRYGVELTVDICS 174

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEG 221
           A        +         E     L +V + T                S+     F  G
Sbjct: 175 AFNQIPSKIIRQNRLKVTAEELQADLASVGIETEAISEIPQAFRVTNSSSLFQSNSFTAG 234

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            + +Q  ++ I   +        VLDLC+APGGKT  L   + +  ++ A D+ + +LE 
Sbjct: 235 YFQIQGLASIIAGHIMNPQPKDIVLDLCSAPGGKTTHLAELMANQGEIVANDLHEDKLEL 294

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +  N +RL +        D      +K FD +LVDAPCS  G I + P++ W +   DI 
Sbjct: 295 IERNCNRLGIRIVRTRAGDGRSLKFEKKFDRILVDAPCSGLGMIAKKPEIKWQKKPQDID 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             A  Q +LL     F+KP G +V+S C++  Q++ EV+ K L  +    ELV L+S + 
Sbjct: 355 SLAELQLELLNNAGRFLKPKGELVYSTCTITHQENLEVINKFLAQN-SDFELVDLSS-WA 412

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             + ++     EG I++ P              GFF   L++ +
Sbjct: 413 DKLGISSEFILEGSIQLLPTWQTNE--------GFFIAKLKKRV 448


>gi|254423387|ref|ZP_05037105.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           PCC 7335]
 gi|196190876|gb|EDX85840.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           PCC 7335]
          Length = 491

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 211/468 (45%), Gaps = 51/468 (10%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-----FRLLSQRDQILVRAIVNVTLRFLP 61
           AR ++   L  +  +      ++D +   +         LS +D+ LV  +V  ++R   
Sbjct: 38  ARQIAFEALRAID-QGAFADVVIDRKLKGTQTGTQLGIQLSSQDKGLVTELVYGSVRRRR 96

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +DA++D        ++   L Q+LR+   Q+ YLD V  +AVVD  V+ AK  +  +  
Sbjct: 97  TLDALIDQFGKRPASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTVQLAKSQRLGK-L 155

Query: 121 AKLVNSILRRVSREKIELLQRIAG--------------ISIIPEWFKERLENFYGKERVL 166
           + +VN++LR+ +RE +     IA               +   P+W  +   +    ++V 
Sbjct: 156 SGVVNAMLRQYAREAMPAANVIADPLKLPEERTRRLGILHSYPDWIIDVWRSMLPDDQVE 215

Query: 167 AISDACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLP 216
           A+ +      Y++L +    ++ +           +   +      +RL     ++  LP
Sbjct: 216 ALCEYFNRSPYLELRINLQRQSLSAAIALFADAGIEALPIEGVPSALRLTTHAGAVTQLP 275

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
           G+AEG W VQD+SA +   L        ++D CAAPGGK+  +   + +   V + D + 
Sbjct: 276 GYAEGWWAVQDSSAQLVSYLLDPQPGEVIIDACAAPGGKSLHIAELMRNEGTVWSCDRTS 335

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            R +K++ N+DRL       I  D+ +        D VL+D PCS  GT+ RH D  W +
Sbjct: 336 SRTKKIQQNIDRLGATIVRPIMGDSRNQPTFLGQGDRVLLDVPCSGLGTLNRHADARWRQ 395

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D +      Q+++L+   ++VKPGG++V++ C+L  Q++E  ++  L  +       P
Sbjct: 396 TPDSVDSLVTLQQEILMHASTWVKPGGVLVYATCTLHPQENEAQIKTFLSQNAGWTIEAP 455

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +  +  GWI++ P +          MDGFF V LRR
Sbjct: 456 -------PPSFGIEPTEAGWIKVWPHIQ--------HMDGFFIVKLRR 488


>gi|192288464|ref|YP_001989069.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192282213|gb|ACE98593.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 450

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 169/440 (38%), Positives = 251/440 (57%), Gaps = 6/440 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ +L  V++KR  L   L+        + LS RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ +L  +L   +P      +  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LEGLLAKLLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132

Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE    + +  AG   +P+W   R    YG E   AI+ A      +DLT
Sbjct: 133 LVNAVLRRCAREGQPLVEELAAGTPDVPQWLLARWSEHYGAETARAIAHAISHEPSLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA +L+  +LPTG +R   L  S+  LPGF EG WWVQDA+A++P +LFG + 
Sbjct: 193 VKSDPAHWAARLHGEVLPTGTVR-TLLQGSVRMLPGFDEGQWWVQDAAAALPARLFGDIA 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300
             SV DLCAAPGGKTAQL  +GA+VTA+D S  R+ +LR NL RL       + +   + 
Sbjct: 252 GKSVADLCAAPGGKTAQLAAAGARVTAIDRSPARVARLRENLARLSFEVETGVADAAEWR 311

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FDAVL+DAPC+STGTIRRHPDV W +   DI   A  Q +LL +  S ++PGG 
Sbjct: 312 GDETAEFDAVLIDAPCASTGTIRRHPDVAWLKQESDIGALAAVQNRLLKKAASLLRPGGT 371

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL+ ++ E+ +  +L +    +   P++ A  +   +A  ++ +G +R  P  L
Sbjct: 372 LVYCTCSLEPEEGEQAIAALLDA-ESSMRRQPIDPA--EVAGLAEIVTADGALRTLPCHL 428

Query: 421 EKIDGVSSGMDGFFAVALRR 440
              D   +G+DGF+A  L +
Sbjct: 429 PHSDPRLAGLDGFYAARLVK 448


>gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
           PCC 7002]
 gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
           PCC 7002]
          Length = 447

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 204/465 (43%), Gaps = 45/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   AR ++   L  +M         LD     S    L+  D+ LV  +V  T+R  
Sbjct: 1   MSS---ARQLAFLALRQIMYHNAYTDVALDRVLHKS---NLTGSDRALVAELVYGTVRRQ 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +DA++D +    + ++   L+ LL++ + Q+ YLD +   A V+ +VE AK +K  + 
Sbjct: 55  KTLDAIIDQLGKKPIDQQPPDLRVLLQLGLYQLRYLDQIPPSAAVNTSVEIAKTNKLGQ- 113

Query: 120 FAKLVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAIS 169
            A +VN  LR   R++ +    +          A     PEW   +    +G E    + 
Sbjct: 114 LAGVVNGCLRGYLRQRDKGHDPLQLPEAAAERLALQYSFPEWLIGQWLEQFGAEETEQLC 173

Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219
                P  +DL V       A           K  A+      +RL E    I  LPG+ 
Sbjct: 174 QWFNRPAQLDLRVNPLRANVAAVQDKLNQAGVKAEAIANLPNALRLVEKRGLIQDLPGYK 233

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRL 276
           EG W +QDASA +   L        ++D CAAPGGKT      +     + A D  + R+
Sbjct: 234 EGWWTIQDASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEKMQDRGTIWASDKYQARI 293

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            K+  N  RL L     +  D+  Y   + + D VL+D PCS  GT+ + PD+ W ++  
Sbjct: 294 NKIEQNARRLKLSMIRTLIGDSRTYSQFRNMADRVLLDVPCSGLGTLHKRPDIRWQQNPQ 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I +    Q +LL  G ++VKPGG +V++ C+L+  ++E +  + L   P   ++VP + 
Sbjct: 354 KIAQLTQLQGELLTTGATWVKPGGYLVYATCTLNPAENEAIANQFLVEHPDW-QIVPPSP 412

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +GWI++ P            MDGFF V L+R
Sbjct: 413 DLPAFPYAQ----EQGWIQVLPQ--------RHDMDGFFMVKLQR 445


>gi|163869265|ref|YP_001610521.1| SUN-family protein [Bartonella tribocorum CIP 105476]
 gi|161018968|emb|CAK02526.1| SUN-family protein [Bartonella tribocorum CIP 105476]
          Length = 454

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 194/445 (43%), Positives = 271/445 (60%), Gaps = 10/445 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V   LL  V+ +   L+ L D E+G   +  LSQRD++L RAI+  +LR   +
Sbjct: 15  PGLAVRQVCVRLLGAVVDRYTPLSGLTDNEHGHPQYLKLSQRDRLLCRAILTTSLRHRGQ 74

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I A L   L   LP +  SLQ LL +SVAQILYLD+ D+A +DLAV  AK D   R F+ 
Sbjct: 75  ITAALSCFLERPLPSQALSLQHLLHISVAQILYLDIPDHAAIDLAVRVAKFDPRMRRFSG 134

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +VN++LR V+RE   L Q++  I  +P WF + L + YG E+   I +       +DLTV
Sbjct: 135 VVNALLRNVAREAAPLRQQVPTIEGVPAWFSQLLVSAYGIEKAQQIIELQSVEPPLDLTV 194

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  V+LP G +RL  L  S+  LPG+ EG WWVQD +A++P  L G L  
Sbjct: 195 KSDSIGWAERLGGVVLPNGSVRLNRLECSVSDLPGYREGAWWVQDFAAALPACLLGELRG 254

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V DLCA+PGGKTAQL + GA+VTA+++S  R+++L+ N++RL+     I + D  ++ 
Sbjct: 255 KRVADLCASPGGKTAQLALQGAEVTAIELSANRVKRLKENMERLYFS-VHIWQGDVRNFH 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P +LFDAVL+DAPCSSTGTIRRHPD+LWT+  DD++K A  Q  LL+  I+ VK GG +V
Sbjct: 314 PTQLFDAVLLDAPCSSTGTIRRHPDILWTKSRDDVIKLAALQYDLLVAAIALVKKGGRIV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--- 419
           FSNCSL +++ E++++K+L      V    L+  Y + +     L  EG +R TP     
Sbjct: 374 FSNCSLAREEGEDLIEKILSIRNDIV----LDPIYPEEMGALAHLLSEGMVRTTPADFCH 429

Query: 420 --LEKIDGVSSGMDGFFAVALRRLI 442
              +       GMDGFFA  LR++ 
Sbjct: 430 KNFDAEKTAPLGMDGFFAARLRKIA 454


>gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1]
 gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1]
          Length = 447

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 206/464 (44%), Gaps = 39/464 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R V+   L  V  K      LL+          LS+RD  L+  IV  T++  
Sbjct: 1   MKAK-NVREVALETLLAVEEKEAYSNLLLNNMIETHR---LSERDVRLLTEIVYGTIQRR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L  +  + +  ++ LLR+++ Q+LYLD + D A +  AVE AK+ + ++ 
Sbjct: 57  DTLDYYLAPFLKKA-RKLERWVRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKK-RGHQG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            A LVN ++R + R+ +  L+ I       A  +  P W  +R    YG      + +  
Sbjct: 115 IASLVNGVMRAILRQGVPPLENIEDEVERLAVATSHPRWLVKRWVEQYGWMETKRMCETN 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224
           + P      V     T A  L+ +      +         ++    ++ +   F  G   
Sbjct: 175 LLPPKQTARVNTARITIAETLDRLRQEGMEVSRGEVAAEAIQAKKGNLANTEAFRRGWIT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +  G   +  VLD CAAPGGK+  +   + +  +V   D+ + ++  +  
Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           N  RL L       +D+        ++ FD +LVDAPCS  G IRR PD+ + +   DI 
Sbjct: 295 NAKRLQLTNISARTLDSRRLGEVFERETFDKILVDAPCSGFGVIRRKPDIKYAKTEADIS 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             A  QR++L      +K GG +V+S C++D +++E V+ + L   P   E  P  +   
Sbjct: 355 SLAALQREILDAVAPLLKKGGTLVYSTCTIDHEENEAVIAQFLNDHP---EFSPDETMKQ 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +  +        G + + P           G DGFF  +LR+ +
Sbjct: 412 RLPEKVQPYVRNGQLHLLPHYF--------GSDGFFIASLRKKV 447


>gi|302389593|ref|YP_003825414.1| sun protein [Thermosediminibacter oceani DSM 16646]
 gi|302200221|gb|ADL07791.1| sun protein [Thermosediminibacter oceani DSM 16646]
          Length = 450

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 119/466 (25%), Positives = 203/466 (43%), Gaps = 42/466 (9%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS  +  R ++  +L+ V  +       L+          +S+ D+ L+  +V   ++ 
Sbjct: 1   MKSVKLKPRELAVRILTEVE-RGSYSNLSLNRHLT----AEISREDRALITELVYGVIKH 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             R+D VL       L      +   LRV + QIL+LD + DYA V+ +V  AK    ++
Sbjct: 56  RIRLDYVLSKFSKIGLNDINPIILNCLRVGLYQILFLDKIPDYAAVNESVNIAKLY--SK 113

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAIS 169
             A  VN +LR V R K  +                   P+W   R  + +G E   ++ 
Sbjct: 114 KAAGFVNGVLRNVIRSKDGIDYPDRVKDPLRYLVVYYSFPKWMIRRWLDLFGFEFTESLC 173

Query: 170 DACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAE 220
            A      + + V     +       L+   +              +    +  L  F  
Sbjct: 174 KAFNEKPRMCVRVNELKINKTGLQAFLDKEGVVHNPGLFLEEALYIDDGPPLTELDSFKN 233

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G +  QD S+ +  +  G  +  +VLD+ AAPGGKT  L   + +  ++ A D+   R++
Sbjct: 234 GYFQPQDESSMLVARALGAASGETVLDVAAAPGGKTTHLAQLMKNSGRIYAWDIHPHRVQ 293

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L+    RL +        DA          FD VLVDAPCS  G IRR PD+ WT+  +
Sbjct: 294 LLKETCQRLGVSIVYPEVRDARVPDKNLFGKFDRVLVDAPCSGLGVIRRKPDIKWTKKPE 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           DI      Q +++     +VKPGGI+++S CS++ +++ EVV++ L+ +    +L  +  
Sbjct: 354 DIPVLKREQLQIIRVSSQYVKPGGILIYSTCSIEPEENREVVKEFLKEN-RDFDLDDIRP 412

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +++  A      G+I+I P++          +DGFF   L+R+
Sbjct: 413 HLPEAL-SADVKEQYGYIQIYPNL--------HSIDGFFIARLKRI 449


>gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 459

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/460 (23%), Positives = 182/460 (39%), Gaps = 42/460 (9%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L  V  K       LD     S    L  R++ L   +     R    +D  +
Sbjct: 13  REAALRALYDVDIKAAYANLALDHHLSRSQ---LDGRERALATELAYGVTRRRATLDWAI 69

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
             V    L +    ++ +LR +  QILY+D +   A VD AVE A++   +   AK VN 
Sbjct: 70  GQVAARPLEKMDPWVRNILREAAYQILYMDRIPPAAAVDQAVELARQY-GHEGVAKFVNG 128

Query: 127 ILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +LR + R    L             A     PEW   +    +G+   + + +A      
Sbjct: 129 VLRNLIRRLPGLPWPDEAADPVRALAVQHSYPEWLVAQWLERFGRGEAVRLLEAGNQVPP 188

Query: 178 IDLTVKFDIET------------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
           + + V     T               +          I+      S+  L    +G+  V
Sbjct: 189 LTVRVNRLKATREEAAAALAAEGVRTEPTRHSPQGLIIQDLTSASSLERLEAMKQGLITV 248

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282
           QD S+ +   +        V+D+ AAPGGK      L+ +  +V ALD+   ++  +  N
Sbjct: 249 QDESSMLAAAVLNPQPGWMVIDVAAAPGGKATHLAELMDNRGRVIALDIHPHKVALIEEN 308

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            +RL     + + +DA           DAVL D PCS  GT+ R PD  W +  +D+   
Sbjct: 309 AERLGTTIVEAVCLDARRVGEAMPERADAVLCDLPCSGLGTLARRPDARWRKSPEDVEAL 368

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QR +L      +KPGG++V+S C++  +++EE+V+  +   P   E        +  
Sbjct: 369 VPIQRAILESAAKALKPGGVLVYSTCTIQPKENEELVEGFVADHP---EFRFDRVWDYLP 425

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++     EG++++ P +         G DGFF   + +
Sbjct: 426 GTISPEGQAEGYVQLLPHV--------HGTDGFFIARMVK 457


>gi|144899806|emb|CAM76670.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antitermination protein
           NusB [Magnetospirillum gryphiswaldense MSR-1]
          Length = 437

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 163/436 (37%), Positives = 243/436 (55%), Gaps = 14/436 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R +   LL CV+ ++  L   LD    +     L++RD+   R +V  TLR L +IDAV
Sbjct: 14  PRSIVLDLLECVLAQKRLLDETLD---SEPRLTKLAERDRAFTRMLVATTLRRLGQIDAV 70

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +   +   LP K   ++ +LR+  AQ+L+LD   +A +   V+ AK       FAKL+N+
Sbjct: 71  IARCIDRPLPAKAGRVRNMLRLGAAQLLFLDTPPHAAISTTVDLAKNSPL-AGFAKLINA 129

Query: 127 ILRRVSREKIELL-QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           +LRR+ RE    + ++ AG    P W  +   + YG +    I+ A  +   +D++V  D
Sbjct: 130 VLRRLDREGRAWVAEQDAGPLNTPAWMWQSWLDTYGPDTARLIAQAHQTEAPVDISVAGD 189

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
              WA +L A ++PTG +R ++    +  LPGFAEG WWVQD +AS+P +L G +    V
Sbjct: 190 PALWAERLEADIMPTGTLR-RQAGGDVTQLPGFAEGAWWVQDLAASLPAKLMGAVKGKRV 248

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
            DLCAAPGGK  QL V+ A+VTA+D S +R+ + R NL+RL L A  + E D   + P  
Sbjct: 249 ADLCAAPGGKALQLAVAEAEVTAVDRSAKRMVRFRRNLERLKLAATIV-ETDVAGWQPPA 307

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FDAVL+DAPC++TGT+RRHPD +  +   D+   A  Q  LL    + VKPGGI+V+  
Sbjct: 308 PFDAVLLDAPCTATGTLRRHPDGVHLKGPGDVAYLADQQHALLKAAAAMVKPGGILVYCV 367

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CSL+ Q+ E  + ++L S   P+   P+  +    +D    L+ +G IR  P  L +   
Sbjct: 368 CSLEPQEGEAQIIRLLES-GAPLVRDPIEPSEIPGLDF--VLTKQGEIRTLPHYLAE--- 421

Query: 426 VSSGMDGFFAVALRRL 441
              GMD FF   L+R+
Sbjct: 422 -KGGMDAFFIARLKRM 436


>gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101]
 gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101]
          Length = 443

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/458 (26%), Positives = 206/458 (44%), Gaps = 40/458 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++  +L  + RK++     LD     +    L   ++ LV  +V   +R    +DA
Sbjct: 4   NPRQLAFIILQEIYRKQVFTDVALDRHLKKN---DLIDANRRLVTELVYGCVRRQRSLDA 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++D +     P++   L+ +L + + Q+ YL+ + + A VD  VE AK++K  +  A  V
Sbjct: 61  IIDQLAKKKSPQQHPYLRIILHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAK-LAGFV 119

Query: 125 NSILRRVSREKIELLQRIAGI------SIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N +LR   R+ + +      +         P W  +      G      +         I
Sbjct: 120 NGLLREYIRQNLTINLPENPVQKLGISYSFPNWIVKYWIEELGLTEAEKLCYWFNLSPSI 179

Query: 179 DLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           DL +     +      A          ++     +RL      I  LPG+ EG W +QD+
Sbjct: 180 DLRINPLKTSVEEVEIAMKNIGISVSRILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDS 239

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +   L        ++D CAAPGGKT  +   +    K+ A+D++  RL+KL  N +R
Sbjct: 240 SAQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTER 299

Query: 286 LHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L L +  I   D+ +        D VL+D PCS  GT+ R  D  W +  ++I + A  Q
Sbjct: 300 LQLKSISISRGDSRNLTEFINQADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +LL     +VKPGG++V++ C++   ++E V++K L ++       P       ++D  
Sbjct: 360 GELLENAAKWVKPGGVLVYATCTIYPLENEGVIEKFLTNNYEWEIEAP-------TVDFM 412

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           ++   EGWI+I P            MDGFF V LRR +
Sbjct: 413 VSPCREGWIKIWPH--------REQMDGFFMVKLRRKV 442


>gi|295399764|ref|ZP_06809745.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978167|gb|EFG53764.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 447

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 206/464 (44%), Gaps = 39/464 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R V+   L  V  K      LL+          LS+RD  L+  IV  T++  
Sbjct: 1   MKAK-NVREVALETLLAVEEKEAYSNLLLNNMIETHR---LSERDVRLLTEIVYGTIQRR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L  +  + +  ++ LLR+++ Q+LYLD + D A +  AVE AK+ + ++ 
Sbjct: 57  DTLDYYLAPFLKKA-RKLERWVRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKK-RGHQG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            A LVN ++R + R+ +  L+ I       A  +  P W  +R    YG      + +  
Sbjct: 115 IASLVNGVMRAILRQGVPPLENIEDEVERLAVATSHPRWLVKRWVEQYGWIETKRMCETN 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224
           + P      V     T A  L+ +      +         ++    ++ +   F  G   
Sbjct: 175 LLPPKQTARVNTARITIAETLDRLRQEGMEVSRGEVAAEAIQAKKGNLANTEAFRRGWIT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +  G   +  VLD CAAPGGK+  +   + +  +V   D+ + ++  +  
Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           N  RL L       +D+        ++ FD +LVDAPCS  G IRR PD+ + +   DI 
Sbjct: 295 NAKRLQLTNISARTLDSRRLGEVFERETFDKILVDAPCSGFGVIRRKPDIKYAKTEADIS 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             A  QR++L      +K GG +V+S C++D +++E V+ + L   P   E  P  +   
Sbjct: 355 SLAALQREILDAVAPLLKKGGTLVYSTCTIDHEENEAVIAQFLNDHP---EFSPDETMKQ 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +  +        G + + P           G DGFF  +LR+ +
Sbjct: 412 RLPEKVQPYVRNGQLHLLPHYF--------GSDGFFIASLRKKV 447


>gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822]
 gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822]
          Length = 450

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 214/465 (46%), Gaps = 42/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R ++  +L  + RK       LD     +  + L   D+ LV  +V   +R +
Sbjct: 1   MKLETDPRQLAVTILRDIYRKDAYTDIALDQGLKQAQLKSL---DRGLVTELVYGIVRRV 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D ++  +   +  ++   L+ +L++ + Q+ YLD +   A V+ +VE AK+++  + 
Sbjct: 58  RTLDQLITQLGKKTATQQPPDLRIILQIGLYQLRYLDQIPVSAAVNTSVELAKKNQLGK- 116

Query: 120 FAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAIS 169
            + +VN ILR+  R + +    +            +   P W  ++    +G+     + 
Sbjct: 117 LSGVVNGILRQYDRIQAQGKDPLELPSDRINRLGVLHSFPNWIVQQWLEEWGEGETEKLC 176

Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +    P  ID+ V     T             K+  V      +RL     SI  LPGF 
Sbjct: 177 EWFNQPAMIDIRVNLLKTTVEEVELGFSKAGVKVLPVPHLPQALRLIGGSRSISQLPGFE 236

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276
           EG W VQD+SA +   L        ++D CAAPGGKT  +   +     + A D    RL
Sbjct: 237 EGWWTVQDSSAQLVTHLLDPQPEEIIIDACAAPGGKTTHIAELMQDRGTIWACDRVASRL 296

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            K++ N  RL L +  I   D+      ++  D VL+DAPCS  GT+ + PD+ W +  +
Sbjct: 297 RKVQQNAQRLQLNSIKICSGDSRQLTQFRETADRVLIDAPCSGLGTLHKRPDIRWRQTPE 356

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I + +  QR+LL +  S++KP G++V++ C+L+  ++E++++  L   P      PL+S
Sbjct: 357 KIEELSVLQRELLEEAASWIKPKGVLVYATCTLNPLENEKLIEAFLHHHPNWQIQPPLSS 416

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +       A   +  GWI++ P +          MDGFF V L +
Sbjct: 417 S-----PAAAFATTPGWIKVLPHL--------HLMDGFFMVKLVK 448


>gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1]
 gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1]
          Length = 442

 Score =  284 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 184/460 (40%), Gaps = 44/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR V+  +++ V          L  E      R L+ RD+  +  +V  T++    +D
Sbjct: 1   MNAREVALKVINRVDIDGAYANIALAQEMS---QRDLTDRDRRFITELVYGTVKAGATLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            +L       L +    ++ +LR+ + QI +L  +   A  + AV+ A++   +    K 
Sbjct: 58  WILSHYSSRPLDKIHPVIRNILRMGIYQIFFLSRIPVSAACNEAVKLAQKY-GHAGTVKF 116

Query: 124 VNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN++LR              + +  + IA     PEW   R    +G      + +A   
Sbjct: 117 VNAVLRSAGRSPDKVVYPDRERDPEKYIALRYFHPEWLVRRWVARFGAAICERLCEANNE 176

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWV 225
              + L              +L    +            L     ++  L     G++ V
Sbjct: 177 TPPLSLRTNTLKTSRADLLRRLAGEGVVCEPSAWAPEGILCHEYPALSKLASLRAGLFQV 236

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD S+     +        V+D C APGGK+  +   + +  KV A D+ + +L  +R N
Sbjct: 237 QDESSMTVAHVLSPRPGDFVIDACGAPGGKSTHIAALMGNKGKVLATDIYEHKLALMRDN 296

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
             RL +   +   +DA           D VLVDAPCS  G +RR PD  W ++   +   
Sbjct: 297 AVRLGISILETQLLDAVKLGELYPGQADRVLVDAPCSGLGVLRRKPDSRWRKNEQMLTDL 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L      +KPGGI+V+S C+ + +++ EVV+  L ++P  + L P        
Sbjct: 357 PRLQLAILASAAKCLKPGGILVYSTCTTEPEENGEVVKSFLATNPEFI-LEPAGRYLPVG 415

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    E  +++ P         + G+DGFF   + R
Sbjct: 416 R-------QEEMVQLWPH--------ADGVDGFFIARMVR 440


>gi|75910625|ref|YP_324921.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
           29413]
 gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
           29413]
          Length = 449

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 198/461 (42%), Gaps = 43/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N+R ++   L  V  K       LD          LS  D+ LV  ++  ++R    +D
Sbjct: 2   TNSRQIAFIALRDV-HKGAYTDVALDRALQK---ANLSDIDRRLVTELLYGSVRRQRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D +      ++   L+ +L + + Q+ Y   +   A V+  VE AK D         
Sbjct: 58  FIIDQLAKKKSHQQPTELRSILHLGLYQLRYQERIPASAAVNTTVELAK-DNGFAGLTGF 116

Query: 124 VNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACI 173
           VN +LR+  R        +            +   P+W  +      G      + +   
Sbjct: 117 VNGLLRQYIRLAEASPDFLELPENPVERLGILHSFPDWIIKVWLEQLGLTETEKLCEWMN 176

Query: 174 SPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVW 223
               +DL V     + A    A          +      +RL     SI  LPGF++G W
Sbjct: 177 QTPTLDLRVNPLRTSVAEVETALKSAGVLARPIPHLPQALRLIGNTGSIQKLPGFSQGWW 236

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQDASA +   L        ++D CAAPGGKT  +   +    KV A D +  RL KL+
Sbjct: 237 VVQDASAQLVSHLLDPQPGEVIIDACAAPGGKTTHIAELMKDQGKVWAGDRTASRLRKLK 296

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            N  RL+L++ +I   D+ +      + D VL+DAPCS  GT+ RH D  W +  + + +
Sbjct: 297 ENAQRLNLHSIEICTGDSRNLPQFYNVADRVLLDAPCSGLGTLHRHADARWRQTPESVQE 356

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            +  Q++LL     FVK GG++V++ C+L   ++EEV+ + +  +       P   +   
Sbjct: 357 LSTLQQELLSHTSKFVKVGGVLVYATCTLHPAENEEVITEFMARNSDWQIEPPSPDS--- 413

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +   +P+GW+++ P         +  MDGFF V LR+
Sbjct: 414 --PYSDYTTPQGWLKVWPH--------NQDMDGFFMVRLRK 444


>gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
           OF4]
 gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
           OF4]
          Length = 448

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 118/462 (25%), Positives = 200/462 (43%), Gaps = 37/462 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R V+  +L  + + +     LL+     S    L +RD  L+  +V  T++  
Sbjct: 1   MSK--NVREVAVDVLLQIEKNQAYSNLLLNQTINKSK---LDRRDIGLLTELVYGTIQRR 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   +   + + +  ++ LLR+SV Q++YLD + D AVV  AV  AK+ + ++ 
Sbjct: 56  DTLDYFLAPFVKKGIDKLEDWVKVLLRLSVYQLVYLDRIPDRAVVHEAVTIAKK-RGHKG 114

Query: 120 FAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            + +VN +LR          + + + ++R+A  +  P+W   R    +G+E    + +  
Sbjct: 115 ISGMVNGVLRSIGREGVPDIKNEKDPIKRLALETSHPKWLVARWVKQFGEEDTRLMCEEN 174

Query: 173 ISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +    + + V     T    ++        AV        L      +     F +G   
Sbjct: 175 LVSPAVTVRVNQTKATREEVISMLEADGIAAVKGELSEDALIIKSGQVFESKAFKQGYVT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
            QD S+ +  +  G  +   V D+CAAPGGKT      + +   V A D+   +++ +R 
Sbjct: 235 AQDESSMLVGRALGANSGERVADVCAAPGGKTTHIAEQMNNEGSVLAFDLHDHKVKLIRG 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L   D    DA         + FD +LVDAPCS  G I+R PD+ W +   DI 
Sbjct: 295 QAARLDLSIIDTQAADARKLAEKFEPESFDRILVDAPCSGFGVIKRKPDIKWAKKEADIK 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q+ +L      +K GG +V+S C++DK ++EE V+  L   P  V+   L +   
Sbjct: 355 AIQSIQQAILNAVAPLLKKGGTLVYSTCTVDKDENEETVEAFLAEHPSFVKDEDLKNRLP 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           K +  +      G + I P             DGFF  +L +
Sbjct: 415 KQVIDSKRF-KSGMVTILPQDF--------NSDGFFISSLVK 447


>gi|121602907|ref|YP_988410.1| putative ribosomal RNA small subunit methyltransferase B
           [Bartonella bacilliformis KC583]
 gi|120615084|gb|ABM45685.1| putative ribosomal RNA small subunit methyltransferase B
           [Bartonella bacilliformis KC583]
          Length = 456

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 196/453 (43%), Positives = 270/453 (59%), Gaps = 18/453 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R V   LL  V+ K  SL+ L D E+G   +  LS RD++L RAI+   LR   +I
Sbjct: 8   GLAVRQVCVRLLGAVLDKHTSLSGLTDHEHGHPLYLKLSYRDRLLCRAILIAALRHRGQI 67

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
            A L   L   LP K ++LQ L  +S AQILYLD+ DYA +DLAV  AK D   R F+ L
Sbjct: 68  QAALSRFLTRPLPSKAFALQHLFHISAAQILYLDIPDYAAIDLAVRAAKIDPRTRCFSGL 127

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           VN+ILR  +R+ + L ++    + +P+WF + L + YG+E+   I         +DLTVK
Sbjct: 128 VNAILRNFARDAMVLKRQALTFNEVPDWFWQLLVSTYGEEKAQRILAMQSETPPLDLTVK 187

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
            D E WA +L  V+L  G +RLK L  S+V LPG+AEG WWVQD +A++P +  G ++  
Sbjct: 188 SDSEGWAKRLGGVVLSNGSVRLKALESSVVDLPGYAEGAWWVQDVAAALPARFLGDIHGK 247

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
            V DLCA+PGGKTAQL + GA VTA+D+S  RL++L  N+ RL+         D  ++ P
Sbjct: 248 RVADLCASPGGKTAQLALQGADVTAVDLSANRLKRLTANMHRLNFS-VSYWNGDVRNFHP 306

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +KLFDAVL+DAPCSS GTIRRHPD+LW +  +DI+K A  Q  LLL  I+ VK GG +VF
Sbjct: 307 EKLFDAVLLDAPCSSLGTIRRHPDILWIKSREDIMKLAAVQYDLLLAAIAVVKKGGHIVF 366

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           SNCSL +++ E++++KVL +    V L P+     +  DM   L+ EG +R TP      
Sbjct: 367 SNCSLAREEGEDLIEKVLATR-DDVVLEPI--LENELGDMKHVLTVEGIVRTTPADFCGS 423

Query: 424 DGVSS--------------GMDGFFAVALRRLI 442
              +               GMDGF+A  LR++ 
Sbjct: 424 VEFADFKSENFYAENKLLFGMDGFYAARLRKIA 456


>gi|52785554|ref|YP_091383.1| YloM [Bacillus licheniformis ATCC 14580]
 gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
           ATCC 14580]
 gi|52348056|gb|AAU40690.1| YloM [Bacillus licheniformis ATCC 14580]
 gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
           ATCC 14580]
          Length = 448

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 208/463 (44%), Gaps = 40/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R V+   L  + + +     LL      +    LS +D+ L+  +V  TL+  
Sbjct: 1   MKN--NVREVALDALIKLDQNQAYSNLLLQSAMKAN---DLSDKDRGLLTELVYGTLQNK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  +  LLR+S+ Q+ YL+ + D A +  AVE AKR + ++ 
Sbjct: 56  LALDYMLKPFIKKP-EKVKDWVIHLLRMSLYQMEYLEKIPDRAALFEAVEIAKR-RGHKG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172
            +  VN +LR V RE +     IA         +  PEW      + YG E    I    
Sbjct: 114 ISSFVNGVLRSVQREGVPSFADIADPIERLAVETSHPEWLVREWTDAYGFEAAEQICRIH 173

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWW 224
           + P    + V     D +T   +LN   +      L +     L  +I S P F EG   
Sbjct: 174 MIPPKQTIRVNRLKNDRDTLLSRLNEAGIEAEEGDLSKDAVKLLKGTIASTPFFKEGEVT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +  G     +VLD CAAPGGK+  +        KV +LD+ + +++ ++ 
Sbjct: 234 IQDESSMLVARALGPERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKE 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              R+ L   +   +DA         + FD +LVDAPCS  G IRR PD+ +++  +D  
Sbjct: 294 AAGRIGLSNIEARALDARKAGEVFEPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSA 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q  +L +    +K GG +V+S C++D  ++E+V+   L       E     +   
Sbjct: 354 RLAGIQLAILNEIAPLLKTGGTLVYSTCTMDPTENEQVMHAFLEEHD---EFEADPTLAE 410

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  + A     +G I+I P           G DGFF  ++R+ 
Sbjct: 411 RLPEKAAPYVKDGSIQILPHYF--------GTDGFFICSMRKK 445


>gi|322384328|ref|ZP_08058026.1| RNA-binding Sun-like protein/16S rRNA
           adenosyl-L-methionine-dependent methyltransferase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150830|gb|EFX44267.1| RNA-binding Sun-like protein/16S rRNA
           adenosyl-L-methionine-dependent methyltransferase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 461

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 121/459 (26%), Positives = 210/459 (45%), Gaps = 38/459 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V ++      +L+          LS++D  L   IV  T++ L  ID  
Sbjct: 16  AREAALQVLLEVEKEHAYSNLMLNKVLRH---ADLSRQDAGLATEIVYGTIQRLNTIDCF 72

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +   L + +  ++ LLR+S  Q+ YLD + D+A V+ AV+ AK+ + ++  + +VN
Sbjct: 73  LARFVKKRLDKLEPWVKCLLRLSFYQLYYLDRIPDHAAVNEAVKIAKK-RGHQGISGMVN 131

Query: 126 SILRRVSREKIE--------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +LR V R+K +         ++RIA     P+W   R    YG+E+   +  A      
Sbjct: 132 GVLRNVIRQKGDLLLPADLSPIRRIALEQSHPDWLVRRWVEQYGEEKTAEMCLANNKAPK 191

Query: 178 IDLT---VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDA 228
           I +    +K   E    +L    +            +     ++     +A G + +QD 
Sbjct: 192 ISIRNNILKHCREELIERLLDEGIQAEASFLAPQGIIITGGGNMALTKEYANGDYSIQDE 251

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +L      + VLD CAAPGGKT      + +   V A D+ + + + ++   +R
Sbjct: 252 SSMLVAELVDPKEGMIVLDCCAAPGGKTTHLAEKMNNKGIVKAFDLYEHKEQLIQEQAER 311

Query: 286 LHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L + +    DA     +     FD +L+DAPCS  G IRR PD+ W +   DI +   
Sbjct: 312 LQLTSVETAVADARKLGERFNRETFDRILLDAPCSGLGVIRRKPDLKWMKKEQDIEEIRK 371

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+ LL      +KPGGI+V+S C+++  ++E+ V + L   P  + ++     +    +
Sbjct: 372 VQQDLLCAVPGLLKPGGILVYSTCTVEIAENEDQVNRFLEKHPDFIPVLEPVPGWPP--E 429

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + + L   G ++I P   +         DGFF V LR+ 
Sbjct: 430 LNVQLMNRGMVQIFPQDYQS--------DGFFMVRLRKK 460


>gi|240851336|ref|YP_002972739.1| SUN-family protein [Bartonella grahamii as4aup]
 gi|240268459|gb|ACS52047.1| SUN-family protein [Bartonella grahamii as4aup]
          Length = 454

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 198/445 (44%), Positives = 273/445 (61%), Gaps = 10/445 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V   LL  V+ K   L+ L D E+G   +  LSQRD++L RAI+  +LR   +
Sbjct: 15  PGLAVRQVCVRLLGAVVDKHTPLSGLTDNEHGHPQYLKLSQRDRLLCRAILTASLRHRGQ 74

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I A L  +L   LP +  SLQ LL +SVAQILYLD+ D+A +DLAV  AK D   R F+ 
Sbjct: 75  ITAALSRLLARPLPSQALSLQHLLHISVAQILYLDIPDHAAIDLAVRVAKLDPRMRRFSG 134

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +VN++LR ++RE + L Q+I  I  +P WF + L + YG E+   I          DLTV
Sbjct: 135 VVNALLRNIAREAVSLRQQIPSIEGVPAWFGQLLMSAYGTEKAHQIIAIQSVEPPFDLTV 194

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  ++LP G +RL  L  S+  LPG++EG WWVQD +A++P  L GTL  
Sbjct: 195 KSDSVGWAERLGGLVLPNGSVRLNRLECSVSDLPGYSEGTWWVQDFAAALPACLLGTLRG 254

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V DLCA+PGGKTAQL + GA+VTA+++S  R+++L+ N++RLH     I + D  ++ 
Sbjct: 255 KRVADLCASPGGKTAQLALQGAQVTAIELSANRVKRLKENMERLHFS-VHIWQGDVRNFH 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P +LFDAVL+DAPCSSTGTIRRHPD+LWT+  DDIVK A  Q  LL+  IS VK GG +V
Sbjct: 314 PTQLFDAVLLDAPCSSTGTIRRHPDILWTKSRDDIVKLAALQHDLLVAAISLVKVGGRIV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           FSNCSL +++ E++++K+L +    V    L   Y + +     L   G +R TP     
Sbjct: 374 FSNCSLAREEGEDLIEKILSTRNDIV----LEPIYPEEMGALAHLLCGGMLRTTPADFCH 429

Query: 423 IDGVSS-----GMDGFFAVALRRLI 442
            +  +      GMDGFFA  LR++ 
Sbjct: 430 KNFDAEKTAFLGMDGFFAARLRKIA 454


>gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
 gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
          Length = 444

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 119/460 (25%), Positives = 197/460 (42%), Gaps = 38/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++   L  + +K       L+          L  RD  L+  IV  T++    +D
Sbjct: 1   MNVRELALDTLLAIEQKGAYSHLQLNEAIQKGR---LDGRDAALLTEIVYGTVQRRDTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             L   L     R +  ++ LLR+++ Q++YLD V D A V  AVE AKR + +R  A L
Sbjct: 58  YYLAPFL-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKR-RGHRGIASL 115

Query: 124 VNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR + RE +  +       +R+A  +  PEW   R    YG E    + +  + P 
Sbjct: 116 VNGVLRAIGREGLPSIEAVDDAGKRLALATSHPEWLVRRWIQQYGYEEAARMCETNLRPP 175

Query: 177 YIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                V     T    L         A+        ++    ++     F  G   +QD 
Sbjct: 176 QSTARVNRLRATVEEALERLRAEGMQAIPGHVAPEAIRAEKGNLAHTETFRAGWLTIQDE 235

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +         VLD CAAPGGKT      +    +V A+D+ +R++  +     R
Sbjct: 236 SSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHERKVMMIEQQAKR 295

Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L     + +D+         + FD VLVDAPC+  G IRR P++ +T+  D I     
Sbjct: 296 LGLDNVATLALDSRRLGERFAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVE 355

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+ +L      +K GG +V+S C+++++++EE + + L   P       L     + + 
Sbjct: 356 IQQAILRAAAPLLKKGGTLVYSTCTVEREENEEAIARFLADHPDFFLDASLAERMPEPVR 415

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +     G +++ P   +         DGFF   LR+ +
Sbjct: 416 PHV---KGGMLQLLPHHFDS--------DGFFIARLRKKV 444


>gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 448

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 112/466 (24%), Positives = 190/466 (40%), Gaps = 43/466 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S  N R  +  +L  + +++     L+D E       ++   D+ L+  +V   LR  
Sbjct: 1   MSSK-NPRRAAFDILLRIEKEKSFADILIDHELSK---DIIKGADRGLLTELVYGVLRRQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D ++         + +  ++ LLR+ + Q  +LD V   A V+  V  AK       
Sbjct: 57  GTLDYIISQFSKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETVNLAKE--LAPR 114

Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
            +  +N++LR                   + +A     P W  ++  +  G E    ++ 
Sbjct: 115 ASGFINAVLRNADRGRDTIAYPDRAERPAEYLAARYSHPAWLAQQWCDQLGLEAAEELAA 174

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEG 221
           A   P  + + V       E    +L    +                   I  LP F +G
Sbjct: 175 AMSEPPPLTVRVNTLRITREELIQRLAGEGVSCSATSWSPDGIRLNQSGQITRLPSFRDG 234

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
           ++ VQD S+ +            VLD CAAPGGKT Q+   +    ++ A DV+ ++L  
Sbjct: 235 LFTVQDESSQLAPLFLAPGKGERVLDACAAPGGKTTQIAQLMQDSGEIYACDVNNKKLRL 294

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           ++   DRL + +     MDA        +  F  +LVDAPCS  G IRR+P+  W++  D
Sbjct: 295 IKETCDRLGINSVRTFTMDATAPSNAIKETTFHRILVDAPCSGLGVIRRNPEGKWSKSGD 354

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D+++ A  Q  +L     +++P G ++++ CS   Q++E VV   L   P  V    +  
Sbjct: 355 DLLQLARTQVSILENLCRYLEPKGTILYATCSTSVQENEYVVDSFLAQHPEFV----VED 410

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   A   +  G+ R  P           GMDGFF+  L+R 
Sbjct: 411 LRPLFPQYAPLFTERGFFRSWPH--------RDGMDGFFSARLKRK 448


>gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16]
 gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16]
          Length = 444

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 196/459 (42%), Gaps = 38/459 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++   L  + +K       L+          L  RD  L+  IV  T++    +D
Sbjct: 1   MNVRELALDTLLAIEQKGAYSHLQLNNAIQKGR---LDGRDAALLTEIVYGTIQRRDTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             L   L     R +  ++ LLR+++ Q++YLD V D+A +  AVE AKR + +R  A L
Sbjct: 58  YYLTPFL-RKARRLEQWVRVLLRLTLYQMVYLDRVPDHAAIFEAVEIAKR-RGHRGIASL 115

Query: 124 VNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR + RE         +  +R+A  +  PEW   R    YG E    + +  + P 
Sbjct: 116 VNGVLRTIGREGLPSLDAINDSAKRLAVATSHPEWLVRRWIEQYGPEETARMCETNLRPP 175

Query: 177 YIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                V     T    L         AV        ++    +      F  G   +QD 
Sbjct: 176 QSTARVNRMRATVEEALERLGSEGVKAVRGLLAPEAIRAENGNFAHTEAFHSGWLTIQDE 235

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +         VLD CAAPGGKT      +    +V A+D+ + +++ +     R
Sbjct: 236 SSMLVARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQR 295

Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L     + +D+     +   + FD +LVDAPC+  G IRR P++ +T+  DD+     
Sbjct: 296 LGLDNIRTLALDSRRLGEWFAPESFDRILVDAPCTGFGVIRRKPEIKYTKGNDDVAALVE 355

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+ +L      +K GG +V+S C+++++++EE + + L   P       L        D
Sbjct: 356 IQQAILRAAAPLLKKGGTLVYSTCTIEREENEEAIARFLADHPDFSLDDRLVERLP---D 412

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  +G +++ P   +         DGFF   LR+ 
Sbjct: 413 AVRPYVQKGMLQLLPHYFDS--------DGFFIARLRKK 443


>gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
           multacida DSM 20544]
 gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
           multacida DSM 20544]
          Length = 452

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 103/462 (22%), Positives = 185/462 (40%), Gaps = 41/462 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V          L           L ++D+  V  +V   ++    +D 
Sbjct: 3   KARETAVRILYEVHENGAYANVALAKALR---QLDLGEQDRRFVTELVYGAVKAGGTLDW 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L   +   + + +  ++++LR+ + QI YLD V   A  + AV+ AK     +  +  V
Sbjct: 60  ILRRYVSRPVRKIQPFVREILRLGLYQIFYLDKVPASAACNTAVDLAKGM-GVKGLSGFV 118

Query: 125 NSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR              K    + +A  S  PEW        +G E    +       
Sbjct: 119 NAVLRTAVREPEKAAFPSGKGHATENLALRSQHPEWLVRHWVRTFGFEAAEKLCAFDNEQ 178

Query: 176 LYIDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
             + +            L  +                 L     ++ +L    EG   VQ
Sbjct: 179 PVLSVRANTLRTDREALLAELAAAGAEAEPSQWAPEGILVRHHGALDALAPLQEGRCQVQ 238

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +   + G      ++D CAAPGGKT  +   +    ++ A D+   +L+++  N 
Sbjct: 239 DESSMLVAHVVGPQPGEFIIDCCAAPGGKTTHMAALMHDEGRILAGDIYSHKLQRIEENA 298

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL + + +  E+DA +   +   + D VLVDAPCS  G +RR PD  W +   +I    
Sbjct: 299 ARLGIQSIETEEIDAREIGEQYEAMADRVLVDAPCSGLGVLRRKPDARWRKTQQEIAALP 358

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L      VKPGG++V+S C+++  +++ VV + L   P   EL          +
Sbjct: 359 DLQLAILESAARAVKPGGVLVYSTCTIELAENQGVVSRFLEQHP-EFELE----TTGHYL 413

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            +    +    +++ P +         G DGFF   ++++ Q
Sbjct: 414 PLPTKHAESKMVQLLPHI--------DGTDGFFICRMKKMDQ 447


>gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF]
 gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF]
          Length = 444

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 104/461 (22%), Positives = 200/461 (43%), Gaps = 41/461 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR  +  +L  +  +       L+ ++        +  D+  V  +V   +  L  ID
Sbjct: 1   MKARESALKVLYAITEQEAYSNIALNQQFRAETH---TPVDKAFVTELVYGVVENLIWID 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            V+D    +   +       LLR+++ QI +LD V  +A V+ +V+ +K+  ++      
Sbjct: 58  YVIDQFSTTKTIKMNPWTLSLLRLAIYQIFFLDRVPVFAAVNESVDLSKKYCKHTTA--F 115

Query: 124 VNSILRRVSREKIELL---------QRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           +N +LR + R+K  +          Q ++     P+W  ++    +  E   ++  A   
Sbjct: 116 INGVLRNILRKKEIIRLPDKSRDLLQYLSVKYSHPKWLVQQFMAQFDDEFTESLLKANNE 175

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWV 225
              + + V      IE     L    +              +   +I  L  + +G  ++
Sbjct: 176 RPDLYVRVNTLKISIEDCITALREKGITVEQSPYIEEALKVKGIHTIEKLDLYLKGQIYI 235

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD S+ +  ++        ++D+C+APGGK   L   + +  +V A DV + +L+ ++ N
Sbjct: 236 QDFSSMLVARIMDPHPGALIMDVCSAPGGKATHLAQLMGNQGEVVARDVHEHKLKLIKEN 295

Query: 283 LDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           + RL +        DA +  P      D VL+DAPCS  G IRR P++ + +  +DI + 
Sbjct: 296 VKRLGVKIIKTEVFDAKELDPTMLQRADGVLIDAPCSGLGIIRRKPEIKYRKKQEDIKEL 355

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L  G  +VKPGG +V+S C++D +++  V+++ L+ +    EL  +N  Y   
Sbjct: 356 QQLQIEILNHGAEYVKPGGTLVYSTCTIDPRENHHVIKQFLKEN-NEFELEDINEKYKAL 414

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +        E  +++ P +           DGFF   L + 
Sbjct: 415 LP---GQHSEQMVQLYPHV--------HHTDGFFIAKLIKK 444


>gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782]
 gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782]
          Length = 467

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 104/457 (22%), Positives = 203/457 (44%), Gaps = 38/457 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  +   +      ++    +   R +   D+     +V  T+++L +ID +
Sbjct: 24  ARETALKILYDITENQAYSNISVNRHLDNDKLREI---DRSFATELVYGTVKWLLQIDYI 80

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +       L +    ++ +LR+ V Q+L+ D +   A  + AVE AKR   ++  ++ VN
Sbjct: 81  IGKYSSVKLKKLSPWIKNVLRLGVYQLLHTDRIPVSAACNTAVELAKRY-GHQASSRFVN 139

Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           ++LR +S+    +            +     P W  ++    YGKE    +  +      
Sbjct: 140 AVLRNISKNIDNIPYPDKSDIASYLSIFYSHPVWMVQKWIELYGKEFTEELLKSNNQVPD 199

Query: 178 IDLTVK---FDIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             +       D +T    L+                + + P SI +L  F +G + VQD 
Sbjct: 200 FIIRTNTLKTDRQTLLDLLHKEGINAEPGRYIEEAVILKNPSSISNLETFKKGYFQVQDE 259

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  ++       +V+D+C+APGGK      ++ +   V A D+ + +L  +  +  R
Sbjct: 260 SSMLAGKILDPKEGETVIDVCSAPGGKATHIAQIMNNNGTVLARDIYEHKLNLIEQSCRR 319

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +        DA D         D VL+DAPCS  G IR+ PD+ ++R  +++ +    
Sbjct: 320 LGIDIIKTEIHDACDIDENLIGKADRVLIDAPCSGLGIIRKKPDIKYSRTENELKEITDL 379

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+K+L     ++K GG +++S C++  Q++ E+VQ  L  +    +L         ++D+
Sbjct: 380 QQKILNIAARYLKVGGYLIYSTCTIQPQENLEIVQDFLAKN-AGFKLSGFRELMPSALDI 438

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   S EG+I++ P++ +         DGFF   ++R
Sbjct: 439 SS--SEEGYIQLYPNINQ--------TDGFFISKIKR 465


>gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3]
 gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3]
          Length = 444

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 119/460 (25%), Positives = 196/460 (42%), Gaps = 38/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++   L  + +K       L+          L  RD  L+  IV  T++    +D
Sbjct: 1   MNVRELALDTLLAIEQKGAYSHLQLNEAIQKGR---LDGRDAALLTEIVYGTVQRRDTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             L   L     R +  ++ LLR+++ Q++YLD V D A V  AVE AKR + +R  A L
Sbjct: 58  YYLAPFL-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKR-RGHRGIASL 115

Query: 124 VNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR + RE +  +       +R+A  +  PEW   R    YG E    + +  + P 
Sbjct: 116 VNGVLRAIGREGLPSIEAVDDAGKRLALATSHPEWLVRRWIQQYGYEEAARMCETNLRPP 175

Query: 177 YIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                V     T    L         A+        ++    ++     F  G   +QD 
Sbjct: 176 QSTARVNRLRATVEEALERLRAEGMQAIPGHVAPEAIRAEKGNLAHTETFRAGWLTIQDE 235

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +         VLD CAAPGGKT      +    +V A+D+ + ++  +     R
Sbjct: 236 SSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQQAKR 295

Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L     + +D+         + FD VLVDAPC+  G IRR P++ +T+  D I     
Sbjct: 296 LGLDNVATLALDSRRLGERFAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVE 355

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+ +L      +K GG +V+S C+++++++EE + + L   P       L     K + 
Sbjct: 356 IQQAILRAAAPLLKKGGTLVYSTCTVEREENEEAIARFLADHPDFFLDASLAERMPKPVR 415

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +     G +++ P   +         DGFF   LR+ +
Sbjct: 416 PHV---KGGMLQLLPHHFDS--------DGFFIARLRKRV 444


>gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842]
 gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842]
          Length = 444

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 201/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     SA   + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A     P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKVTVEEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +        +VLD CAAPGGKT  +        KV +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+ K L+  P   E     +   +  
Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYINEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|255525650|ref|ZP_05392583.1| sun protein [Clostridium carboxidivorans P7]
 gi|296185410|ref|ZP_06853820.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           carboxidivorans P7]
 gi|255510636|gb|EET86943.1| sun protein [Clostridium carboxidivorans P7]
 gi|296050244|gb|EFG89668.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           carboxidivorans P7]
          Length = 442

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 200/456 (43%), Gaps = 41/456 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V         ++  E   S    ++ +D+ LV  IV  TL++   ID +
Sbjct: 4   ARKTAVKILKEVFYGNSYSNMVIGKELNRS---DMNDKDKALVTEIVYGTLKYKYTIDTI 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L++ + S L +    +  +LR+S+ QI YLD + ++AVV+ AVE AKR  +    A+LVN
Sbjct: 61  LNYYIKSGLKKLDVDILNILRISIYQIRYLDKIPEFAVVNEAVELAKR--KAVKTARLVN 118

Query: 126 SILRRVSREKIELLQR-------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R               +      P+W      N YGKE    I         I
Sbjct: 119 GVLRSYLRSNNIDYYNKNSDIEKMCFDYSFPKWMVSLFSNQYGKEETKKILQGLNEVPAI 178

Query: 179 DLTVKFDIETWAHKLNA---------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            + V      +                        +     +I + P F  G+  VQD S
Sbjct: 179 TVRVNNLKTNYEEAWEELKKNGYDIEEGKVCPEAIIINRGRNIENNPLFKNGLITVQDES 238

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +         N++VLDLC+APGGKT  +     +  K+ A D+ + +L  ++ N  RL
Sbjct: 239 AMMVAPSMELKENMTVLDLCSAPGGKTCHIAELTNNQGKIFAFDIHENKLPLIKENAKRL 298

Query: 287 HLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +       +D   +    ++  D VL+D PCS  G IR+ P++ W +D + +      Q
Sbjct: 299 GITNVKCGTLDASKYMDIYEEKGDRVLIDVPCSGLGIIRKKPEIKWNKDKESLESLVKIQ 358

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           + ++L    +VK  G ++++ C+L+K+++EE ++  ++  P   ++ P+      +I   
Sbjct: 359 KTIMLNAAKYVKKNGKLIYATCTLNKEENEENIKWFIKKRP-DFQIEPIYYGKLDNI--- 414

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EG+I I P+           MDGFF   + R
Sbjct: 415 -IYHDEGYITILPNKY---------MDGFFIAKMIR 440


>gi|254415201|ref|ZP_05028963.1| ribosomal RNA small subunit methyltransferase B [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178007|gb|EDX73009.1| ribosomal RNA small subunit methyltransferase B [Microcoleus
           chthonoplastes PCC 7420]
          Length = 448

 Score =  282 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 125/461 (27%), Positives = 204/461 (44%), Gaps = 46/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   L  +          LD     +    L++ D+ L+  +V  T R    +DA
Sbjct: 3   NPRQLAFLALRDIHSHGAFTDIALDRVLRHT---TLNRPDRALLTDLVYGTTRHTRTLDA 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++D +      ++   L+ +L + + Q+ YL  +   A V+ +VE AK ++  +  A +V
Sbjct: 60  LIDQLGKKKAHQQPPDLRLILHLGLYQLRYLQRIPPSAAVNTSVELAKANQL-KGLAGVV 118

Query: 125 NSILRRVSREKIELLQRIA------------GISIIPEWFKERLENFYGKERVLAISDAC 172
           N +LR+ +R                       +   P+W  E   N  G E   A+    
Sbjct: 119 NGVLRQYARLNTNPQLDDPLQLPPQPIQRLGILYSFPDWIIELWLNQLGIEETEALCQWF 178

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGV 222
             P  IDL +      I+T    + A              +R +    SI +LPGF EG 
Sbjct: 179 NQPPTIDLRINPLNASIDTVETAMQAAGIQVQRLPHLPQALRFQGSTGSIQTLPGFNEGW 238

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           W +QD+SA +   L     +  ++D CAAPGGKT  L   +     + A D +  RL+K+
Sbjct: 239 WTIQDSSAQLVSHLLNPQPHDVIIDACAAPGGKTTHLAELMRDRGTIWACDKAASRLKKV 298

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           + N  RL L +  I   D+ D+    +  D VL+DAPCS  GT+ R PD+ W      + 
Sbjct: 299 KANTQRLQLQSIQICPGDSRDFPQFTQKADTVLLDAPCSGLGTLHRRPDIRWRCTPARVQ 358

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + +  Q +LL Q  ++VKPGG++V++ C+L  Q++E V+Q  L          P      
Sbjct: 359 ELSVLQSELLTQTATWVKPGGVLVYATCTLHPQENEAVIQAFLERHLHWCIDAP------ 412

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
               +    +P+GW+++ P            MDGFF V L+
Sbjct: 413 -PPTLTAFSTPQGWLKVLPH--------QHQMDGFFMVRLK 444


>gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61]
 gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52]
 gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61]
 gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52]
          Length = 444

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 194/460 (42%), Gaps = 38/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++   L  + +K       L+          L  RD  L+  IV  T++    +D
Sbjct: 1   MNVRELALDTLLAIEQKGAYSHLQLNEAIQKGR---LDGRDAALLTEIVYGTVQRRDTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             L   L     R +  ++ LLR+++ Q++YLD V D A V  AVE AKR + +R  A L
Sbjct: 58  YYLAPFL-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKR-RGHRGIASL 115

Query: 124 VNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR + RE         +  +R+A  +  PEW   R    YG E    + +  + P 
Sbjct: 116 VNGVLRAIGREGLPSIEAVDDAGKRLALATSHPEWLVRRWIQQYGYEEAARMCETNLRPP 175

Query: 177 YIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                V     T    L          +        ++    ++     F  G   +QD 
Sbjct: 176 QSTARVNRLRATVEEALERLRAEGMQVIPGHVAPEAIRAEKGNLAHTETFRAGWLTIQDE 235

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +         VLD CAAPGGKT      +    +V A+D+ + ++  +     R
Sbjct: 236 SSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQQAKR 295

Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L     + +D+         + FD VLVDAPC+  G IRR P++ +T+  D I     
Sbjct: 296 LGLDNVATLSLDSRRLGERFAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVE 355

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+ +L      +K GG +V+S C+++++++EE + + L   P       L     K + 
Sbjct: 356 IQQAILRAAAPLLKKGGTLVYSTCTVEREENEEAIARFLADHPDFFLDASLAERMPKPVR 415

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +     G +++ P   +         DGFF   LR+ +
Sbjct: 416 PHV---KGGMLQLLPHHFDS--------DGFFIARLRKRV 444


>gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
 gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus
           amyloliquefaciens LL3]
          Length = 447

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 211/463 (45%), Gaps = 39/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R ++   L  + + +     LL      +    LS +D+ L+  +V  TL+  
Sbjct: 1   MKK-INVRELALEALEKLEQNQAYSNLLLTSVIKTN---TLSDQDRGLLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  + QLLR+S  Q+ YL+ + D A +  AVE AK+ + ++ 
Sbjct: 57  IALDYMLKPFIRKP-NKVKPWVIQLLRLSAYQMEYLEKIPDRAAIHEAVEIAKK-RGHKG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN ILR + RE       I       +  +  PEW  +     YG E    I    
Sbjct: 115 IASFVNGILRSLQREGAPSFAEIEDPVLRLSTETSHPEWLVKEWVEAYGFETAEKICRIH 174

Query: 173 ISPLYIDLTVK---FDIETWAHK-----LNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P    L V     D ET  ++     L A         +K L  SI S   F  G   
Sbjct: 175 LVPPKQTLRVNRIKADKETLLNEMENAGLEAEAGDLSPDAIKLLKGSIASTEFFQNGQVS 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +        +VLD CAAPGGK+A +   + +   +T+LD+ + +++ ++ 
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMKNEGSLTSLDLHRHKVKLIQE 294

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             +RL L   D   MDA           FD +LVDAPCS  G IRR PD+ +T+  +D  
Sbjct: 295 GAERLGLTIIDAQTMDARKAGDAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSR 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + +  Q  +L +    VK GG +V+S C++D+ ++EEV+   ++  P   E  P  S   
Sbjct: 355 RLSEIQLGILREIAPLVKKGGTLVYSTCTMDRTENEEVMHAFIQEHP---EFEPDLSLEK 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  + A     +G ++I P           G DGFF  ++R+ 
Sbjct: 412 RLPEKARPFVQDGSLQILPHYF--------GTDGFFISSMRKK 446


>gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
           SAFR-032]
 gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
           SAFR-032]
          Length = 447

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 39/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R V+   L  + + +     LL     D   + L+ +D+ L+  +V  TL+  
Sbjct: 1   MKKS-NVREVALDALIKLEQNQAYSNLLLQSVMKD---KDLADQDKPLLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     +    + QLLR+S+ Q++YL+ + D A +  AVE  K+ + ++ 
Sbjct: 57  LALDYMLAPFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELTKK-RGHKG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            + LVN +LR V RE +     I       +  +  P W  +     YG E   ++    
Sbjct: 115 ISSLVNGVLRSVQREGVPAFDDIKDPVKRLSIETSHPLWLVQEWVQSYGFEATESMCRIH 174

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
           + P    L V     D      KL    + T         LK +  SIVS P F EG   
Sbjct: 175 LVPPKQTLRVNRIKTDRAALKQKLLDAGIETELGDLSEDALKLMKGSIVSTPSFQEGYVT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +        +VLD CAAPGGK+      +    ++ +LD+ + +++ ++ 
Sbjct: 235 IQDESSMLVARALDPQPGETVLDACAAPGGKSTHIAERMNDEGQIVSLDLHEHKVKLIKQ 294

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL+L   +   +DA           FD +L+DAPCS  G IRR PD+ +T+  +D  
Sbjct: 295 AAKRLNLTQIEAKALDARKAKDDYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSPEDSA 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q+ +L +    +KPGG +V+S C++D  ++++V+   L+         P  S   
Sbjct: 355 RLAIIQQAILKETAPLLKPGGTLVYSTCTMDPSENQQVIHAFLQEHQDF---EPDLSLNE 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  +        G ++I P           G DGFF  ++R+ 
Sbjct: 412 RLPEQVAPFVQNGSVQILPHYF--------GTDGFFICSMRKK 446


>gi|316931426|ref|YP_004106408.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599140|gb|ADU41675.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris DX-1]
          Length = 450

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 171/441 (38%), Positives = 254/441 (57%), Gaps = 8/441 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ +L  V++KR  L   L+        + LS RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ +L  +L   +P      +  L +  AQIL++DV D+A VDL+V   + D+    +A 
Sbjct: 73  LEGLLARLLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132

Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE    + +  AG   +P+W   R    YG +   AI+ A      +DLT
Sbjct: 133 LVNAVLRRCAREGQPLVEELAAGTPDVPQWLLARWSAHYGADTARAIAQAISHEPSLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA +L+  +LPTG +R   L  S+  LPGF EG WWVQDA+A++P +LFG + 
Sbjct: 193 VKSDPAHWATRLHGEVLPTGTVR-TLLQGSVRMLPGFDEGQWWVQDAAAALPARLFGDIA 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             SV DLCAAPGGKTAQL  +GA+VTA+D S  R+ +LR NL RL L   +    DA ++
Sbjct: 252 GKSVADLCAAPGGKTAQLAAAGARVTAIDRSPARVARLRENLARLSLE-VETGVADAAEW 310

Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPC+STGTIRRHPDV W +   DI   A  Q +LL +  S ++PGG
Sbjct: 311 RGDATAEFDAVLIDAPCASTGTIRRHPDVAWLKQESDIGALAAVQNRLLKKAASLLRPGG 370

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL+ ++ E+ +  +L + P  +   P++ A  +   +   ++ +G +R  P  
Sbjct: 371 TLVYCTCSLEPEEGEQAIAVLLAAEP-SMRRQPIDPA--EVAGLTEIVTADGALRTLPCH 427

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           L   D   +G+DGF+A  L +
Sbjct: 428 LPHSDPRLAGLDGFYAARLMK 448


>gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453]
 gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453]
          Length = 460

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/458 (25%), Positives = 202/458 (44%), Gaps = 38/458 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++ ++L+ V ++      LL+          LS+ D  L   ++  T+  L  +D  
Sbjct: 14  PRELAMNVLTQVEQEGAYSNLLLNSALQK---ASLSKSDAGLATELIYGTISRLNTLDYF 70

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           LD  +   + + +  ++ LLR+S+ Q++YLD + D+AVV  AV  AKR + ++  + +VN
Sbjct: 71  LDRYVNKGVAKLQPWVRALLRMSLYQVVYLDRIPDHAVVSEAVNLAKR-RGHQGISGMVN 129

Query: 126 SILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +LR            E +   +RI+ +   P+W  ER    YG E   AI  A   P  
Sbjct: 130 GVLRNILRQKADLTIPEDMPAARRISLLHSHPQWLVERWIAQYGTEATEAICAANNEPPA 189

Query: 178 IDLTV---KFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V       E     + +          +    + +   ++     + +G+  +QD 
Sbjct: 190 VSVRVNTTMISREEMLKLMGSHGLDATPSPLSPYGIVVKGAGNMALTDWYRDGLISIQDE 249

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +       + VLD CAAPGGK+A +   +     + A D+   + + +     R
Sbjct: 250 SSMLVAEAIQPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIIANDIHTHKGKLISDQASR 309

Query: 286 LHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L L +   +  DA    D      FD +L+DAPCS  G IRR PD+ W +  +DI + A 
Sbjct: 310 LGLDSIMTVTGDALDLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSEEDIAEIAA 369

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL    S ++PGGI+V+S C+++  ++E VV   L         +  +     S  
Sbjct: 370 LQLRLLESVSSLLRPGGILVYSTCTMEPLENEGVVSAFLEGHAEFA--IADDGLGSLSRL 427

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +L   G ++I P             DGF+   + R
Sbjct: 428 EEKSLLRGGGVQILPQHY--------HSDGFYIARISR 457


>gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
           CCY9414]
 gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
           CCY9414]
          Length = 449

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 200/461 (43%), Gaps = 43/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N R ++ + L  V  K       L+          L   D+ L+  +V  ++R    +D
Sbjct: 2   TNPRQIAFNALRDV-HKGAYADVALNRALQKV---TLPNHDRRLLTELVYGSVRRQRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D +      ++   L+ +L + + Q+ Y   +   A V+  V+ AK +         
Sbjct: 58  TLIDQLATKKSHQQPKDLRSILHLGLYQLRYQERIPASAAVNTTVQLAKEN-GFSGLTGF 116

Query: 124 VNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACI 173
           VN +LR+  R   +L + +            +   P+W  +   +         + D   
Sbjct: 117 VNGLLRQYIRLAQKLPEPLKLPENPVERLGILHSFPDWIIQVWLDQLDLVETENLCDWMN 176

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVW 223
               IDL +      IE     L +              +RL     +I +LPGF EG W
Sbjct: 177 QTPTIDLRINPLRTSIEEVEAALESAGILTRRVNNCPQALRLIGSTGAIQNLPGFNEGWW 236

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQDASA +   L        V+D CAAPGGKT  +   +    ++ A D +  RL KL+
Sbjct: 237 SVQDASAQLVGYLLHPQAGEVVIDACAAPGGKTTHIAELMGDEGEIWACDRTASRLRKLK 296

Query: 281 CNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            N  RLHL +  I   D+ +        D +L+DAPCS  GT+ RH D  W +  + + +
Sbjct: 297 ENAQRLHLQSIQICTGDSRNLPQFNHRGDRLLLDAPCSGLGTLHRHADARWRQTLESVQE 356

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            +  Q +L+ Q   FVKPGG++V++ C+L   ++E V+   L + P   ++ P ++ +  
Sbjct: 357 LSILQTELISQTSQFVKPGGVLVYATCTLHPAENEGVISTFLANHPQW-QIYPPSADFLD 415

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           S       +P+GW+++ P            MDGFF V LR+
Sbjct: 416 S----AYSTPQGWLKVWPH--------RQNMDGFFMVRLRK 444


>gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 444

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 202/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     SA   + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTSAYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKVTVEEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +        +VLD CAAPGGKT  +        KV +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+ K L+  P   E     +   +  
Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYINEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42]
 gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42]
          Length = 447

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 212/463 (45%), Gaps = 39/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R ++   L  + + +     LL      +    LS +D+ L+  +V  TL+  
Sbjct: 1   MKK-INVRELALEALEKLEQNQAYSNLLLTSVIKTN---TLSDQDRGLLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  + QLLR+S  Q+ YL+ + D A +  AVE AK+ + ++ 
Sbjct: 57  IALDYMLKPFIRKP-NKVKSWVIQLLRLSAYQMEYLEKIPDRAAIHEAVEIAKK-RGHKG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN ILR + RE +     I       +  +  PEW  +     YG E    I    
Sbjct: 115 IASFVNGILRSLQREGVPSFAEIEDPVLRLSTETSHPEWLVKEWVEAYGFEAAEKICRIH 174

Query: 173 ISPLYIDLTVKF---DIETWAHK-----LNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P    L V     D ET  ++     L A         +K L  SI +   F  G   
Sbjct: 175 LIPPKQTLRVNHIKSDRETVLNEMENAGLEAEAGDLSPDAIKLLKGSIANTAFFQNGRVS 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +        +VLD CAAPGGK+A +   + +   +T+LD+ + +++ ++ 
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKE 294

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             +RL L   D   MDA           FD VLVDAPCS  G IRR PD+ +T+  +D  
Sbjct: 295 GAERLGLTIIDAQTMDARKAGEAFGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSR 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + +  Q  +L +    VK GG +V+S C++D+ ++EEV+   ++  P   E  P  S   
Sbjct: 355 RLSEIQLGILREIAPLVKKGGTLVYSTCTMDRTENEEVMHAFIQEHP---EFEPDLSLEK 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  + A     +G ++I P           G DGFF  ++R+ 
Sbjct: 412 RLPEKARPFVQDGSLQILPHYF--------GTDGFFISSMRKK 446


>gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579]
 gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579]
          Length = 444

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 204/461 (44%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     SA   + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A +       ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKVTVEEAIELLASEGIEAKLGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +        +VLD CAAPGGKT  +        KV +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V++K L+  P   E     +   +  
Sbjct: 355 TIQIAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLTPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|209965632|ref|YP_002298547.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum
           centenum SW]
 gi|209959098|gb|ACI99734.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum
           centenum SW]
          Length = 447

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 169/427 (39%), Positives = 242/427 (56%), Gaps = 16/427 (3%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           +   +RK +     L+    +   R L  RD+  VR +     R L ++DA++   L   
Sbjct: 34  IQATLRKGVPFDDALE---ANRGVRALEPRDRGFVRLLCATVFRRLGQLDALVQGALAKP 90

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
               K  +Q +LR+  AQ+L+L    +A VD +VE A   +    +  LVN++LRR+SRE
Sbjct: 91  GQPVKGPVQDILRLGAAQLLFLGTPAHAAVDTSVELAVA-RGQTPYKGLVNAVLRRLSRE 149

Query: 135 KIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
              L   + AG    P+W        YG     AI +A ++   +D+TV+ D + WA +L
Sbjct: 150 GAGLLAAQDAGRLNTPDWLWLAWRQAYGTGATRAIVEAHLAEPPLDITVRADADLWAERL 209

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            A  LP G +RL      +  LPGFAEG WWVQDA+A+IP +LFG +    VLDLCAAPG
Sbjct: 210 GAERLPGGSLRLPAG-GPVTELPGFAEGAWWVQDAAAAIPARLFGDVAGREVLDLCAAPG 268

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313
           GKTAQL  +GA+VTA+D S++RLE+LR NL RL L   + +  DA  + P    DAVL+D
Sbjct: 269 GKTAQLAAAGARVTAVDRSEKRLERLRENLARLGLE-VETVAADATAWSPDAPVDAVLLD 327

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS+TGTIRRHPDV   +  +D+ K A  Q +LL++    +KPGG++V++ CSL  ++ 
Sbjct: 328 APCSATGTIRRHPDVQRLKTEEDVAKLARVQARLLIRAADMLKPGGLLVYATCSLQPEEG 387

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E  V+ +L   P    LV +     +   +A A++  G +R TP ++        GMDGF
Sbjct: 388 ERQVEALLARRPD---LVRVPVDPAELGGLAGAVTAAGDVRTTPGLIP------GGMDGF 438

Query: 434 FAVALRR 440
           FA  LRR
Sbjct: 439 FAARLRR 445


>gi|304404144|ref|ZP_07385806.1| sun protein [Paenibacillus curdlanolyticus YK9]
 gi|304347122|gb|EFM12954.1| sun protein [Paenibacillus curdlanolyticus YK9]
          Length = 521

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/466 (26%), Positives = 202/466 (43%), Gaps = 42/466 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+   L  + R+      +L+          LS+ D  L   +V  TL+    +D  
Sbjct: 67  AREVALEALVKIEREEAFSNLVLNSALQH---AELSRADAGLATELVYGTLQRRLSLDHA 123

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  +    L + +  + QLLR+S  Q+L+LD +  +A V+ AV  AKR + +   + +VN
Sbjct: 124 LSALAAKGLGKLEPWVLQLLRLSAYQLLFLDRIPAHAAVNEAVAIAKR-RGHSGISGMVN 182

Query: 126 SILRR------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            +LR              +        RIA     PEW   R    YG+     I  A  
Sbjct: 183 GMLRNLLRRRDELAPEAAAESAARPALRIALRHSYPEWLVARWIAAYGEAAAEQICAAGN 242

Query: 174 SPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +P +  + V     T    +          A    +    + +   S+    GF +G W 
Sbjct: 243 APPHASIRVNRLRATREEAIAILAESGIEAAKSAVSPAGVVAQRGGSLADTIGFRDGRWT 302

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  Q       ++VLD CAAPGGKT  L   + +  +V A DV   +   +  
Sbjct: 303 IQDESSMLVAQAARPAAGMTVLDCCAAPGGKTTHLAELMGNEGRVIANDVHPHKQALIEQ 362

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             +RL L   + +  DA +   +     FD VL+DAPCS  G I R P++ WT+   DI 
Sbjct: 363 QAERLGLTCVEAVTGDAAELGERYSSESFDLVLLDAPCSGLGVIARKPEIKWTKSEGDIR 422

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q+KL+      VKP G +V+S C++D+ +++  + + L+  P         +   
Sbjct: 423 EIAAIQKKLINGVAGLVKPDGRLVYSTCTIDRDENDRQISQFLKDHPEYTLDAEWPAELL 482

Query: 399 KSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +S+  A A+  E  G +++ P+          G DGF+   LR+  
Sbjct: 483 ESLRSAGAVQGEFTGALQLLPNHF--------GSDGFYIATLRKRT 520


>gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1134]
 gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264]
 gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171]
 gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1134]
 gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264]
 gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171]
          Length = 444

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 203/461 (44%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     SA   + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKVTVEEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +        +VLD CAAPGGKT  +        KV +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V++K L+  P   E     +   +  
Sbjct: 355 TIQIAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLTPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21]
 gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21]
          Length = 448

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/466 (24%), Positives = 192/466 (41%), Gaps = 43/466 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S  N R  +  +L  + +++     L+D E       ++   D+ L+  +V   LR  
Sbjct: 1   MSSK-NPRRAAFDILLRIEKEKSFADILIDHELSK---DIIKGADRGLLTELVYGVLRRQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D ++         + +  ++ LLR+ + Q  +LD V   A V+  V  AK       
Sbjct: 57  GTLDYIISQFSKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETVNLAKE--LAPR 114

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            +  +N++LR   R +  +             A     P W  ++  +  G E    ++ 
Sbjct: 115 ASGFINAVLRNADRGRDTITYPDRAARPAEYLAARYSHPAWLAQQWCDQLGLEAAEELAA 174

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEG 221
           A   P  + + V       E    +L    +                   I  LP F +G
Sbjct: 175 AMSEPPPLTVRVNTLRITREELIRRLVGEGVSCSATSWSPDGIRLNQSGQITRLPSFRDG 234

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
           ++ VQD S+ +            VLD CAAPGGKT Q+   +    ++ A DV+ ++L  
Sbjct: 235 LFTVQDESSQLAPLFLAPGKGERVLDACAAPGGKTTQIAQLMQDSGEIYACDVNNKKLRL 294

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           ++   DRL + +     MDA        +  F  +LVDAPCS  G IRR+P+  W++  D
Sbjct: 295 IKETCDRLGINSVRTFTMDATAPSNAIKETTFHRILVDAPCSGLGVIRRNPEGKWSKSGD 354

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D+++ A  Q  +L     +++P G ++++ CS   Q++E VV   L S P  V    +  
Sbjct: 355 DLLQLARTQVSILENLCRYLEPKGTILYATCSTSIQENEYVVDSFLGSHPEFV----VED 410

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   A   +  G+ R  P           GMDGFF+  L+R 
Sbjct: 411 LRPLFPQYAPLFTERGFFRSWPH--------RDGMDGFFSARLKRK 448


>gi|218245524|ref|YP_002370895.1| sun protein [Cyanothece sp. PCC 8801]
 gi|218166002|gb|ACK64739.1| sun protein [Cyanothece sp. PCC 8801]
          Length = 451

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 126/467 (26%), Positives = 213/467 (45%), Gaps = 44/467 (9%)

Query: 1   MKSG---MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M +     +AR ++  +L  + R+       +D     +    LS  D+ LV  +V   +
Sbjct: 1   MSNSDQITHARPLALVILREIERRGTFTDIAIDRGLKST---DLSGSDRALVTELVYGIV 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
           R    +D ++D +   +  ++   L+ +L + + Q+ YL  +   A V+ AV  AK +  
Sbjct: 58  RRKRTLDTLIDQLGKKASHQQPPDLRLILYIGLYQLRYLSQIPPSAAVNTAVNLAKENSL 117

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVL 166
            +  + +VN ILR+  R   E    +            +   P++  +     +G E   
Sbjct: 118 -QRLSGVVNGILRQYIRLAQENNDPLILPDDPISRLGVLYSFPDFMIKLWLEQWGLETTE 176

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVML---------PTGGIRLKELPESIVSLPG 217
            + +    P  +D+ +     T       +              G+RL+    +I  LPG
Sbjct: 177 ELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQGLRLQGKTGAIQDLPG 236

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274
           F EG W VQD+SA +   L     +  ++D CAAPGGKT  +   +     + A D    
Sbjct: 237 FKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGGKTTHIAELMGDQGTIWACDRYAS 296

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           RL+KL  N +RL L +  I+  D+      + + D VLVDAPCS  GT+ RHPD+ W + 
Sbjct: 297 RLKKLSANKERLQLNSIKIVTGDSRQLDQFQGIADRVLVDAPCSGLGTLHRHPDIRWRQT 356

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + I + A  Q++LL    ++VKP GI+V++ C+L  Q++E V++  L S P     VP 
Sbjct: 357 PEKIEELAILQKELLETTANWVKPQGILVYATCTLTYQENEGVIEHFLASHPHWKIDVPS 416

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++      +A  ++  G I+I P   +        MDGFF V L++
Sbjct: 417 PNS-----PVAKWMTASGSIKILPHQQD--------MDGFFMVKLKK 450


>gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241]
 gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241]
          Length = 444

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPIWLVQEWTSEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAIALLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         VLD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P       +     + +
Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEFEWDTTIKERMPEKL 414

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +   EG ++I P             DGF+   LR+ +
Sbjct: 415 G---SYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L]
 gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L]
          Length = 444

 Score =  280 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTSEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         VLD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P       +     + +
Sbjct: 355 TIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEFEWDTTIKDRMPEKL 414

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   EG ++I P             DGF+   LR+ +
Sbjct: 415 ---SPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 444

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLATATSHPVWLVQEWASEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIERGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         VLD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|257058561|ref|YP_003136449.1| sun protein [Cyanothece sp. PCC 8802]
 gi|256588727|gb|ACU99613.1| sun protein [Cyanothece sp. PCC 8802]
          Length = 451

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 126/467 (26%), Positives = 211/467 (45%), Gaps = 44/467 (9%)

Query: 1   MKSG---MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M +     +AR ++  +L  + R+       +D     +    LS  D+ LV  +V   +
Sbjct: 1   MSNSDQITHARPLALVILREIERRGTFTDIAIDRGLKST---DLSGSDRALVTELVYGIV 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
           R    +D ++D +   +  ++   L+ +L + + Q+ YL  +   A V+ AV  AK +  
Sbjct: 58  RRKRTLDTLIDQLGKKASHQQPPDLRLILYIGLYQLRYLSQIPPSAAVNTAVNLAKENSL 117

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVL 166
            +  + +VN ILR+  R   E    +            +   P++  +     +G E   
Sbjct: 118 -QRLSGVVNGILRQYIRLAQENNDPLILPDDPISRLGVLYSFPDFMIKLWLEQWGLETTE 176

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVML---------PTGGIRLKELPESIVSLPG 217
            + +    P  +D+ +     T       +              G+RL+    +I  LPG
Sbjct: 177 ELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQGLRLQGKTGAIQDLPG 236

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274
           F EG W VQD+SA +   L     +  ++D CAAPGGKT  +   +     + A D    
Sbjct: 237 FKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGGKTTHIAELMGDQGTIWACDRYAS 296

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           RL+KL  N +RL L +  I+  D+      + + D VLVDAPCS  GT+ RHPD+ W + 
Sbjct: 297 RLKKLSANKERLQLNSIKIVTGDSRQLDQFQGIADRVLVDAPCSGLGTLHRHPDIRWRQT 356

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + I + A  Q++LL    ++VKP GI+V++ C+L  Q++E V++  L S P     VP 
Sbjct: 357 PEKIEELAILQKELLETTANWVKPQGILVYATCTLTYQENEGVIEHFLASHPHWKIDVPS 416

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +       A  ++  G I+I P   +        MDGFF V L++
Sbjct: 417 PDS-----PAAKWMTASGAIKILPHQQD--------MDGFFMVKLKK 450


>gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Western North America USA6153]
          Length = 444

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P WF +     YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWFVQEWTAEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         +LD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 MIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
           1942]
 gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
           1942]
          Length = 447

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 206/463 (44%), Gaps = 39/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R ++   L  + + +     LL      +    LS +D+ L+  +V  TL+  
Sbjct: 1   MKKN-NVRDIALEALMKLDQNQAYSNLLLKSVIKSN---ELSDQDRGLLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  + QLLR+S+ Q+ YL+ +   A +  AVE AK+ + ++ 
Sbjct: 57  TALDYMLKPFINKP-AKVKPWVIQLLRLSLYQMEYLEKIPHRAAIHEAVEIAKK-RGHKG 114

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN +LR V RE         + + R+A  +  PEW  +     YG +    I    
Sbjct: 115 IASFVNGVLRSVQREGVPSFAAINDPVTRLATETSHPEWLVKEWAEAYGFDAAEKICRIH 174

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWW 224
           + P    L V     D +     L A  +      L       L  SI     F  G   
Sbjct: 175 LVPPKQTLRVNQMKTDRDELLESLAAEGIEAEKGDLSPDAVKLLKGSIAGSRFFKNGDVS 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +  G     ++LD CAAPGGK+      + +   V +LD+ + +++ ++ 
Sbjct: 235 IQDESSMLVARALGPEAGETILDACAAPGGKSTHIAERMGNEGSVLSLDLHEHKVKLIKE 294

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             +RL L       MDA           FD +LVDAPCS  G IRR PD+ ++++ +D  
Sbjct: 295 AANRLGLTIIKPEAMDARKASEAFQDDEFDRILVDAPCSGFGVIRRKPDMKYSKNPEDSA 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q  +L +    VK GG +V+S C++D+ ++EEV+   ++  P   E  P  S   
Sbjct: 355 RLAKIQLSILREIAPLVKKGGTLVYSTCTMDRTENEEVIHAFIQEHP---EFEPDLSLEK 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  + A      G ++I P           G DGFF  ++R+ 
Sbjct: 412 RLPEKARPFVRGGSLQILPHYF--------GTDGFFICSMRKK 446


>gi|225181330|ref|ZP_03734774.1| sun protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167911|gb|EEG76718.1| sun protein [Dethiobacter alkaliphilus AHT 1]
          Length = 451

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 199/464 (42%), Gaps = 40/464 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K  ++AR  S   L  V      +   LD          L  RD+ L   I    + +  
Sbjct: 4   KRKIDAREASLLALQRVEADDAYVNLALDEVLSSH---SLDPRDKRLAAEITYGVITYKL 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D +++ V    + +    + Q+LR+   Q+ YLD V   A V   VE  K+ K+ R  
Sbjct: 61  TLDWLIEKVSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHATVELVKKGKK-RGL 119

Query: 121 AKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDA 171
           A  VN ++R   R+K  L             +     P W   R  N YG E    +  A
Sbjct: 120 APFVNGVMRGALRKKDHLPWPDKKKDSANYLSVRYSHPLWLVRRWLNRYGPEEAEKLVAA 179

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGV 222
                 + + V     D +T   +L A  +      +            +  L  + EG 
Sbjct: 180 NNQAAPLSIRVNTLRTDRDTLLSELTAAGVEAVPSTVVPEGALLTRSGRLTELAPYREGR 239

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           + VQ  SA +  ++       +VLD C+APGGKT  L   + +   + ALD+   RLE +
Sbjct: 240 FQVQGESAMLTSRVLDPQAGDAVLDGCSAPGGKTTHLAQLMNNSGDILALDIHPHRLELV 299

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           + N  R+ +       +DA +   +    FD +L+D PCS  G IRR PD+ W R  DDI
Sbjct: 300 KANCRRMGVDIVRTQCLDAREIAKENPDSFDCILLDVPCSGFGVIRRKPDLKWRRSEDDI 359

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            K A  Q  +L    + +KPGG +V+S C+ + ++++EVV+++L++      +VP +   
Sbjct: 360 RKLAHVQCDMLKAAAAVLKPGGTLVYSTCTNEPEETDEVVEELLKNQDD---MVPDDLRP 416

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +   D        G I + P +         G+DGFF   L+++
Sbjct: 417 YLPQDWQQDAGKTG-IHLLPHI--------HGVDGFFISRLKKI 451


>gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99]
 gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99]
          Length = 444

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 111/461 (24%), Positives = 199/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR +         E  + ++R+A  +  P W  +     YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVNEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         +LD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 MIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70]
 gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70]
          Length = 447

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 206/464 (44%), Gaps = 39/464 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R V+   L  V  K      LL+          LS+RD  L+  IV  T++  
Sbjct: 1   MKAK-NVREVALETLLAVEEKEAYSNLLLNKMIETHR---LSERDVRLLTEIVYGTIQRR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L  +  + +  ++ LLR+++ Q+LYLD + D A +  AVE AK+ + ++ 
Sbjct: 57  DTLDYYLTPFLKKA-RKLERWVRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKK-RGHQG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            A LVN ++R + R+ +  L++I       A  +  P W  +R    YG E    + +  
Sbjct: 115 VASLVNGVMRAIQRQGVPPLEKIEDEVERLAVATSHPLWLVKRWVEQYGLEETKRMCETN 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P      V     T    ++         V+       ++    ++     F  G   
Sbjct: 175 LLPPKQTARVNTARITVEEAIDKLKQEGMEVVLGEVAEEAIQAKRGNLAHTDAFRRGWIT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +  G   +  VLD CAAPGGK+  +   + +  +V   D+ + ++  +  
Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           N  RL L       +D+        +++FD +LVDAPCS  G IRR PD+ + +   DI 
Sbjct: 295 NAKRLQLTNISARVLDSRRLGEVFEREMFDKILVDAPCSGFGVIRRKPDIKYAKTEADIP 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                QR++L      +K GG +V+S C++D+ ++E V+ + L   P   E  P  +   
Sbjct: 355 SLVALQREILHAVAPLLKKGGTLVYSTCTIDRDENEAVIAQFLDDHP---EFSPDETMKR 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +  +        G + + P           G DGFF  +LR+ +
Sbjct: 412 RLPEKVQPYVHNGQLHLLPHYF--------GSDGFFIASLRKKV 447


>gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987]
 gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987]
          Length = 444

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWASEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         VLD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKRV 444


>gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames]
 gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne]
 gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam]
 gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488]
 gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442]
 gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193]
 gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465]
 gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389]
 gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174]
 gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W]
 gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108]
 gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820]
 gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. CDC 684]
 gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. A0248]
 gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. CNEVA-9066]
 gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. A1055]
 gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Kruger B]
 gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Vollum]
 gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Australia 94]
 gi|301055356|ref|YP_003793567.1| sun protein [Bacillus anthracis CI]
 gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. Ames]
 gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne]
 gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam]
 gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488]
 gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193]
 gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442]
 gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389]
 gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465]
 gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174]
 gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W]
 gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108]
 gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820]
 gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. CDC 684]
 gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
           str. A0248]
 gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI]
          Length = 444

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +     YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         +LD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 MIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
 gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
          Length = 451

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 99/461 (21%), Positives = 181/461 (39%), Gaps = 46/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N RL++   LS + R        L           LS  D+     +V   +R    +DA
Sbjct: 11  NIRLLAVKALSDINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++       L +    + ++LR+ + QI+Y+D V + A V+ +V+ AK     R  +  V
Sbjct: 68  IIIHFAKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAK--NLTRGLSGFV 125

Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR V RE   +            I+ I   P W      N  GK++ + +       
Sbjct: 126 NAVLRSVLRESDSISIGELAKSEAEEISFIYNQPLWLVNLWMNEMGKDKTIDLCAWFNEQ 185

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225
             +   +      IE    +L  +               +      +       +G    
Sbjct: 186 PRLTARINTIKISIEDCLKELQDLGWTVEQDTYIPEVVYINAHQGHLEKAKPVIDGHITF 245

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
            D ++ +   +        +LD CAAPGGK+  +   + +   + + D+   +L+ +  N
Sbjct: 246 MDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLDLMNHN 305

Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
             RL +        D        K+ FD VLVDAPCS  G +++  D+ W +    + + 
Sbjct: 306 AQRLGVSIVSTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKTESLLTEL 365

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L +    VK  G +V+S C+++  ++E+V++K L +      + P++      
Sbjct: 366 PPLQLEILEKAAEMVKVNGYLVYSTCTINSGENEDVLEKFLATHKN-FVIDPVSYEGLPP 424

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  S +G I   P            MDGFF   ++R+
Sbjct: 425 -------STDGMITTYP--------PRDHMDGFFMARMKRI 450


>gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           03BB102]
 gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           03BB102]
          Length = 444

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +     YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         +LD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLIARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 MIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120]
 gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120]
          Length = 449

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 199/461 (43%), Gaps = 43/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N+R ++   L  V  K       LD          LS  D+ LV  ++  ++R    +D
Sbjct: 2   TNSRQIAFIALRDV-HKGAYTDVALDRALQK---ANLSDIDRRLVTELLYGSVRRQRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D +      ++   L+ +L + + Q+ Y   +   A V+  VE AK D         
Sbjct: 58  FIIDQLAKKKSHQQPTELRSILHLGLYQLRYQERIPASAAVNTTVELAK-DNGFAGLTGF 116

Query: 124 VNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACI 173
           VN +LR+  R        +            +   P+W  +      G      + +   
Sbjct: 117 VNGLLRQYIRLAEASPDFLELPENPVERLGILHSFPDWIIKVWWEQLGLTETEKLCEWMN 176

Query: 174 SPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVW 223
               +DL V   + + A    A          +      +RL     SI  LPGF++G W
Sbjct: 177 QTPTLDLRVNPLLASVAEVETALKSAGVLARPIPHLPQALRLIGNNGSIQKLPGFSQGWW 236

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQDASA +   L        ++D CAAPGGKT  +   +    KV A D +  RL KL+
Sbjct: 237 IVQDASAQLVGHLLDPQPGEVIIDACAAPGGKTTHIAELMKDEGKVWAGDRTASRLRKLK 296

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            N  RL+L++ +I   D+ +      + D VL+DAPCS  GT+ RH D  W +  + + +
Sbjct: 297 ENAQRLNLHSIEICIGDSRNLPQFYDVADRVLLDAPCSGLGTLHRHADARWRQTPESVQE 356

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            +  Q++LL     FVK GG++V++ C+L   ++EEV+ + +  +       P   +   
Sbjct: 357 LSMLQKELLAHTSKFVKVGGVLVYATCTLHPAENEEVITEFVAGNSDWQIEPPRPDS--- 413

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +   +P+GW+++ P         +  MDGFF V LR+
Sbjct: 414 --PYSAYTTPQGWLKVWPH--------NQDMDGFFMVRLRK 444


>gi|319409409|emb|CBI83055.1| SUN-family protein [Bartonella schoenbuchensis R1]
          Length = 447

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 204/445 (45%), Positives = 277/445 (62%), Gaps = 9/445 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V + LL  V+ K  SL+ L D EYG   +  LS RD++L RAI+   LR   +
Sbjct: 7   PGLVVRQVCARLLGVVLDKHKSLSGLTDHEYGHPHYLKLSHRDRLLCRAILMAALRHRGQ 66

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I A L   L   LP +  SLQ LL +S AQILYLD+ D+A +DLAV+ AK D   R F+ 
Sbjct: 67  ITAALSRFLKRPLPLQALSLQHLLHISAAQILYLDIPDHAAIDLAVQMAKIDPRTRRFSG 126

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN+ILR  +RE + L  +   I  +P WF + L + YG ++   I     +   +DLTV
Sbjct: 127 LVNAILRNFAREAVCLRVQEPTIKDVPAWFGQLLVSTYGVDKAHQILAIQNNAPSLDLTV 186

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  V+LP G IRL  L  S+V+LPG+A+G WWVQD +A++P  L G +  
Sbjct: 187 KSDSIGWAKRLGGVVLPNGSIRLGALDGSVVNLPGYAQGAWWVQDFAAALPACLLGDIRG 246

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V+D CA+PGGKTAQL + GA VTA++ S  RLE+L+ N++RLHL A      D  D+ 
Sbjct: 247 KRVVDFCASPGGKTAQLALQGADVTAVESSANRLERLKENMERLHLSA-HYWTGDMRDFY 305

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            ++LFDAVL+DAPCSSTGTIRRHPD+LWT+ +DDI K A  Q  LLL  I+FVK GG ++
Sbjct: 306 SEQLFDAVLLDAPCSSTGTIRRHPDILWTKSSDDITKLAAVQYDLLLAAIAFVKKGGCII 365

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP----- 417
           FSNCSL +Q+ E++++K+L +    + L P+ +    S  M   LS +G +R TP     
Sbjct: 366 FSNCSLARQEGEDLIKKILSTR-DDIILEPILAEEMGS--MKHLLSSDGTLRTTPADCCY 422

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
           D  +  D +  GMDGFFA  LR++ 
Sbjct: 423 DNCDVEDPLLFGMDGFFAARLRKVA 447


>gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97]
 gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97]
          Length = 444

 Score =  279 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPIWLVQEWTSEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T            + A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEGAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         VLD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187]
 gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1]
 gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187]
 gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1]
          Length = 444

 Score =  279 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPIWLVQEWTSEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T            + A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEGAIALLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         VLD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 451

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 186/461 (40%), Gaps = 46/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N RL++   LS + R        L           LS  D+     +V   +R    +DA
Sbjct: 11  NIRLLAVKALSDINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++       L +    + ++LR+ + QI+Y+D V + A V+ +V+ AK+    R  +  V
Sbjct: 68  IIVHFAKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 125

Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR V RE   +            I+ I   P W      N  GK++ + +       
Sbjct: 126 NAVLRSVLRECDSISIGELAKSEAEEISFIYNQPLWLVNLWMNEMGKDKTVDLCAWFNEQ 185

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225
             +   +      I+    +L  +               +      +       EG    
Sbjct: 186 PRLTARINTVKVSIDDCIKELQNLGWTVEQDKDIPEVVYINSHQGHLEKAKPVIEGHITF 245

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
            D ++ +   +        +LD CAAPGGK+  +   + +   + + D+   +L+ +  N
Sbjct: 246 MDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLDLMNQN 305

Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            +RL +        D        K+ FD VLVDAPCS  G +++  D+ W +  D + + 
Sbjct: 306 AERLGVSIVSTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKSEDLLNEL 365

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L +    VK  G +V+S C+++  ++E+V++K L +    V    ++   +K 
Sbjct: 366 PPLQLEILEKASEMVKVNGYLVYSTCTINSGENEDVLEKFLATHKNFV----IDPVSYKG 421

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  A     +G I   P            MDGFF   ++RL
Sbjct: 422 LPPA----KDGMISTYP--------PRDHMDGFFMARMKRL 450


>gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2]
 gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2]
          Length = 444

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 123/456 (26%), Positives = 204/456 (44%), Gaps = 38/456 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R V+   L  + + +     LL      +    LS +D+ L+  +V  TL+    +D +L
Sbjct: 2   REVALDALIKLDQNQAYSNLLLQSAMKAN---DLSDKDRGLLTELVYGTLQNKLALDYML 58

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +     + K  +  LLR+S+ Q+ YL+ + D A +  AVE AKR + ++  +  VN 
Sbjct: 59  KPFIKKP-EKVKDWVIHLLRMSLYQMEYLEKIPDRAALFEAVEIAKR-RGHKGISSFVNG 116

Query: 127 ILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +LR V RE +     IA         +  PEW      + YG E    I    + P    
Sbjct: 117 VLRSVQREGVPSFADIADPIERLAVETSHPEWLVREWTDAYGFEAAEQICRIHMIPPKQT 176

Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWWVQDASAS 231
           + V     D +T   +LN   +      L +     L  +I S P F EG   +QD S+ 
Sbjct: 177 IRVNRLKNDRDTLLSRLNEAGIEAEEGDLSKDAVKLLKGTIASTPFFKEGEVTIQDESSM 236

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +  +  G     +VLD CAAPGGK+  +        KV +LD+ + +++ ++    R+ L
Sbjct: 237 LVARALGPERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKEAAGRIGL 296

Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
              +   +DA         + FD +LVDAPCS  G IRR PD+ +++  +D  + A  Q 
Sbjct: 297 SNIEARALDARKAGEVFEPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSARLAGIQL 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L +    +K GG +V+S C++D  ++E+V+   L       E     +   +  + A 
Sbjct: 357 AILNEIAPLLKTGGTLVYSTCTMDPTENEQVMHAFLEEHD---EFEADPTLAERLPEKAA 413

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +G I+I P           G DGFF  ++R+ 
Sbjct: 414 PYVKDGSIQILPHYF--------GTDGFFICSMRKK 441


>gi|297617049|ref|YP_003702208.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144886|gb|ADI01643.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 460

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 199/460 (43%), Gaps = 38/460 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+ +LL  V  K       +D E               LV  +VN T+R    +D V
Sbjct: 11  PREVALNLLYRVEHKGAYANLAVDRELDRYEDNG---SQHALVTELVNGTVRMRKHLDWV 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L+  L   + ++   L+++LR+SV Q+L++D V +YAVV+ AV  A R K +R  + +VN
Sbjct: 68  LNLFLSKPIQKQNPWLREILRMSVYQLLFMDNVPEYAVVNEAVGLAGR-KLDRGLSAVVN 126

Query: 126 SILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            +LR                  ++ ++     PEW   R    YG +    + +      
Sbjct: 127 GVLRNVIRNRGEIPYPDMYQNPVEYLSVYYSHPEWMVARWVERYGLKGACQLLEHNNVRP 186

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQ 226
            + L       D E     L               G+ ++E  + +  L  + EG ++VQ
Sbjct: 187 RVALRTNLLKVDREELFRSLTDEGCRCTLSCLTPWGVWVEETGKPLRKLHSYREGWFYVQ 246

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +            V DL A  GGKT+ L   + +   + A+++  +++E L+ N+
Sbjct: 247 DDASMLVSAACAPEAGQVVYDLAAGVGGKTSHLAELMGNQGIIRAVEILPKKVEILKENI 306

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL +   DI   DA           D VL+DAPCS  G +RR  D  W +   DI   +
Sbjct: 307 RRLGITIVDIWTGDALGPLAPGWGEGDVVLLDAPCSGLGVLRRRSDARWRKSEKDITVLS 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-RSSPIPVELVPLNSAYWKS 400
             Q++LL +G   V+PGG++V+S C+L+ +++EEV+   L   +   ++ +     ++  
Sbjct: 367 ELQKRLLKRGAQLVRPGGVLVYSTCTLEPEENEEVIDWFLGEETGFVLDDLSQPLRFFPF 426

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +  G + + P           G DG F   LRR
Sbjct: 427 SPEDAKAASRGMLVLFP--------PRYGTDGMFIARLRR 458


>gi|308272081|emb|CBX28689.1| hypothetical protein N47_G40130 [uncultured Desulfobacterium sp.]
          Length = 450

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/465 (25%), Positives = 201/465 (43%), Gaps = 43/465 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            + R ++   L+ + +K+ +L  LL+          L +R++ L  A+V   LR+  R+D
Sbjct: 2   HDTRSLAIQFLNSLDKKKHTLDSLLEEFQNKYI---LPKREKALFNALVYGVLRWRSRLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            ++         +    +  +LR+ + QI++L  +   A V+ +VE AK     +  +  
Sbjct: 59  WIIRQFSKQPPEKTNTEILNILRIGLFQIIHLNRIPVSAAVNTSVEIAKHTVGTK-CSGY 117

Query: 124 VNSILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACIS 174
           VN++LRR  RE   L                   PEW  +R  +  GK   + + DA  +
Sbjct: 118 VNAVLRRTVREYKSLCFPDMDKKTEYGISVNKSFPEWMIKRWVSLLGKNSAIDLCDAINN 177

Query: 175 PLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
              I + V             IE+    +       GG+      E I  +  F +G + 
Sbjct: 178 IPPITVRVNTLKTNRDELISCIESETQDIRPTDCSPGGVSFSRPKELISEMEAFKKGGFQ 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           VQD +A +   L        V+D CA  GGKT  +   + +   +TA+D  K +L +L  
Sbjct: 238 VQDEAAQLAAFLMDPQPGEKVMDACAGLGGKTGHIGQLMENKGYITAIDKDKEKLFRLSL 297

Query: 282 NLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           +++RL +        D     F       FD +L+DAPCS+ G IRR+PD+ W    D +
Sbjct: 298 DMERLGITNVTTSAGDFGDPVFLKSYSGKFDRILIDAPCSNMGVIRRNPDIKWKLTEDKL 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           +     Q   L      +KP GI+V++ CS + +++EEV+ K L   P       ++  +
Sbjct: 358 LFYQKRQFLFLDNIAMLLKPAGIIVYAVCSTETEENEEVINKFLLKHPDFT----IDDMH 413

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                    ++ +G+IR  P +          MDGFF   L+R+I
Sbjct: 414 CFPKIFEPFVNSDGFIRTYPHL--------HNMDGFFLARLKRII 450


>gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10]
 gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10]
          Length = 442

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 205/454 (45%), Gaps = 39/454 (8%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
            ++L+ V ++      LL+     S    L++ D  L   ++  T+  L  +D  LD  +
Sbjct: 1   MNVLTQVEQEGAYSNLLLNSALQKS---SLAKSDAGLATELIYGTISRLNTLDYFLDKFV 57

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              + + +  ++ LLR+S+ QI+YLD + D+AVV  AV  AKR + ++  + +VN +LR 
Sbjct: 58  NKGVRKLQPWVRALLRISLYQIVYLDRIPDHAVVSEAVNLAKR-RGHQGISGMVNGVLRN 116

Query: 131 V--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +          E +   QRI+ +   P+W  ER  + YG E   AI  A   P  + + V
Sbjct: 117 ILRQKETLAIPEDMTDAQRISLLHSHPQWLVERWISQYGTEATEAICAANNEPPAVSVRV 176

Query: 183 ---KFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
                  +     +    L            + +   ++     + EG+  +QD S+ + 
Sbjct: 177 NTTMISRDDMLKLMGNHGLDASPSSVSPYGIVVKGAGNMALTDWYREGMISIQDESSMLV 236

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +       + VLD CAAPGGK+A +   +     + A D+   + + +     RL L +
Sbjct: 237 AEAVQPEPGMRVLDCCAAPGGKSAHMGELMNDEGSIVANDIHAHKGKLISDQASRLGLDS 296

Query: 291 EDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             I+  DA    D      FD +L+DAPCS  G IRR PD+ W +  +DI + A  Q +L
Sbjct: 297 ISIVTGDALDLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQEDIHEIAALQLRL 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    + ++PGGI+V+S C+++ +++E VV   L              A  +  +   +L
Sbjct: 357 LESVSTLLRPGGILVYSTCTIEPRENEGVVSAFLEGHSEFAIAEDGLGALSRLGE--NSL 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
           +  G I+I P             DGF+   L RR
Sbjct: 415 ARGGGIQILPQHY--------HSDGFYIARLGRR 440


>gi|158320464|ref|YP_001512971.1| sun protein [Alkaliphilus oremlandii OhILAs]
 gi|158140663|gb|ABW18975.1| sun protein [Alkaliphilus oremlandii OhILAs]
          Length = 445

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/461 (22%), Positives = 187/461 (40%), Gaps = 41/461 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  +  +L  +          L+ E  + ++ LL   D+ L+  +V   L     ID
Sbjct: 1   MNPREGALKVLYEINVNEAFSNIALNKELNNESYNLL---DRNLLTELVYGVLENQIYID 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            VL       L +       LLR+ + Q+L+LD V  +A V+  V  +K+    +     
Sbjct: 58  HVLSQFSNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC--KKTTGF 115

Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           +N +LR V R +  +            ++     PEW  +     +    V  +  A   
Sbjct: 116 INGVLRNVQRNRNNIKMPKPEKNRIKYLSIRYSHPEWLVQLFLKHFDVNFVEELLKANNK 175

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWV 225
              + L +      +      L A        ++       +   +I     + +G   +
Sbjct: 176 KPDLYLRINTLKISVADCIQLLEAEGYVVEQSKIVEEAIVVKGIHNIEKTDFYKKGYIQI 235

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD S+ +  +         V+D+C+APGGKT  +   + +  K+ A D+ + +L+ +   
Sbjct: 236 QDISSMLVAKALAPKEGELVMDICSAPGGKTTHIAQLMNNKGKIIARDIHEHKLKLIDRT 295

Query: 283 LDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
             RL ++         D  D       D VLVDAPCS  G IRR P++ + ++  DI   
Sbjct: 296 AKRLGIHIIQTEKFSGDHLDESFIHKADKVLVDAPCSGLGIIRRKPEIKYRKEAQDITSI 355

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q K+L     +VK  G +V+S C+++ ++++ +VQK L           L     + 
Sbjct: 356 VELQYKILKTAAQYVKIEGTLVYSTCTINPEENDHIVQKFLEQHQNYT----LVHLNNEY 411

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            D+ +    +  I++ P++        +G DGFF    +R+
Sbjct: 412 QDIILQEPNKATIQLYPNI--------NGTDGFFIAKFKRI 444


>gi|254472533|ref|ZP_05085933.1| SUN protein [Pseudovibrio sp. JE062]
 gi|211958816|gb|EEA94016.1| SUN protein [Pseudovibrio sp. JE062]
          Length = 415

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 171/417 (41%), Positives = 245/417 (58%), Gaps = 6/417 (1%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83
            L C LDL  G   ++ L   D+ LVRAI+   LR   +I  V+D  L   +P K   + 
Sbjct: 2   PLDCELDLNNGHPGYKRLEPNDRALVRAIIGTALRRRGQIQDVIDRFLDRPIPEKTGRVL 61

Query: 84  QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL-QRI 142
            +L V++AQ+ ++ V D+A V LAV  A RD   + +  LVN++LRR +RE   ++ ++ 
Sbjct: 62  DILHVAMAQLFFMSVPDHAAVSLAVTLAGRDGRAKPYKNLVNAVLRRATREGAAIIAEQD 121

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
           A     PEW   R    YG+E   A+S A ++  Y+DLTV  D E WA KL   +     
Sbjct: 122 AEKLNAPEWMFARWCEVYGEEAARAMSAAHMTEPYLDLTVPADREAWAEKLGGEVQLGYS 181

Query: 203 IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262
           +RL+     I  L GF +G WWVQDA+A++P +L G +    V DLCAAPGGKT QL  +
Sbjct: 182 VRLQP-DGPIEKLEGFDDGKWWVQDAAAAVPARLLGDIKGKVVADLCAAPGGKTMQLAAA 240

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI 322
           GA VTA+D+S RRL++L  NL R+ L AE     D  ++ P  LFDA+L+DAPCS+TGTI
Sbjct: 241 GADVTAVDISARRLQRLTQNLKRVGLEAE-TEISDLREFVPIDLFDAILLDAPCSATGTI 299

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           RRHPDV W +  DD++K A  Q +LL + + ++KPGG +V+  CSL++++ E  +Q++L 
Sbjct: 300 RRHPDVAWLKREDDVLKLADLQYELLEKALGWLKPGGTLVYCTCSLEQEEGELQIQRLLL 359

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             P  V+ VP+ +     +  A A++ +G  R  P         S G+DGFFA  LR
Sbjct: 360 EHP-EVQRVPVTAEELGGV--AEAINSQGDFRAMPGQNLSSGKTSGGLDGFFAARLR 413


>gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           HGF5]
 gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           HGF5]
          Length = 442

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 39/454 (8%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
            ++L+ V ++      LL+     S    L++ D  L   ++  T+  L  +D  LD  +
Sbjct: 1   MNVLTQVEQEGAYSNLLLNSALQKS---SLAKSDAGLATELIYGTISRLNTLDYFLDKFV 57

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              + + +  ++ LLR+S+ QI+YLD + D+AVV  AV  AKR + ++  + +VN +LR 
Sbjct: 58  NKGVRKLQPWVRALLRISLYQIVYLDRIPDHAVVSEAVNLAKR-RGHQGISGMVNGVLRN 116

Query: 131 V--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +          E +   QRI+ +   P+W  ER  + YG E   AI  A   P  + + V
Sbjct: 117 ILRQKETLAIPEDMTDAQRISLLHSHPQWLVERWISQYGTEAAEAICAANNEPPAVSVRV 176

Query: 183 ---KFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
                  +     + +  L            + +   ++     + +G+  +QD S+ + 
Sbjct: 177 NTTMISRDDMLKLMGSHGLDASPSSVSPYGIVVKGAGNMALTDWYRDGMISIQDESSMLV 236

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +       + VLD CAAPGGK+A +   +     + A D+   + + +     RL L +
Sbjct: 237 AEAVQPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIVANDIHAHKGKLISDQASRLGLDS 296

Query: 291 EDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             I+  DA    D      FD +L+DAPCS  G IRR PD+ W +  +DI + A  Q +L
Sbjct: 297 ISIVTGDALDLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQEDIHEIAALQLRL 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    + ++PGGI+V+S C+++  ++E V+   L              A  +  +   +L
Sbjct: 357 LESVSTLLRPGGILVYSTCTIEPMENEGVISAFLEGHSEFAIAEDGLGALSRLGE--NSL 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
           S  G I+I P             DGF+   L RR
Sbjct: 415 SRGGGIQILPQHY--------HSDGFYIARLGRR 440


>gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rettgeri DSM 1131]
 gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rettgeri DSM 1131]
          Length = 427

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 219/457 (47%), Gaps = 45/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +  V+    SL+ +L         R ++ +D+ L++ I    LR+L
Sbjct: 1   MKNTYNLRSIAATAIFQVLDNGQSLSTVLPDL-----QRNINDKDKALLQEICFGVLRYL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+ +L  L+ V + Q+LY  +  +A +   V+ A   K+ +  
Sbjct: 56  PKLEWFISQLMEKPLTGKQRTLHYLIMVGIYQLLYTRIPPHAALAETVDGAVALKKPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR   R++++L +RIA      + P W  +RL+  Y ++    I  +    P+
Sbjct: 115 KGLINGVLRSFQRQQVQLEERIANNTSQYLHPSWLLKRLQTAYPEDWQSIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229
           ++ +         + + L    +                P ++  LPGF +G   VQD S
Sbjct: 175 WLRVNSQHHTAAQYLNLLEQSEITAHLHPSHPNAIRLDEPTAVSRLPGFEDGWSTVQDVS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A    +L    N  S+LDLCAAPGGKT  ++    +  V A+D+ + RL++++ NL RL 
Sbjct: 235 AQGCAELLEPQNGESILDLCAAPGGKTTHILELAPRANVIAVDIDEYRLKRVKENLIRLK 294

Query: 288 LYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            +A  I         +   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q 
Sbjct: 295 QHAVVIQGDGTQPEKWAKDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQA 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L     ++KPGG ++++ CS+  +++ + +Q  L                    D ++
Sbjct: 355 QILEAIWPYLKPGGTLLYATCSIMPEENGKQIQNFLSKHN----------------DASL 398

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +  +++ P         ++G DGFF   L + +
Sbjct: 399 NDGTDAGLQVLPS--------TNGGDGFFYARLVKKV 427


>gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 452

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/461 (22%), Positives = 189/461 (40%), Gaps = 46/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N RL++   LS + RK      +L           LS  D+     +V   +R    +DA
Sbjct: 12  NIRLLAVKALSDINRKGAYANIVLQDYISKY---NLSDLDRRFFTELVYGVVRRRNYLDA 68

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++       + +    + ++LR+ V QI+Y+D V + A V+ +V+ AK+    R  +  V
Sbjct: 69  IIVHFAKRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 126

Query: 125 NSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N+ILR V RE+            ++ I+ I  IP W      + +G+++   +       
Sbjct: 127 NAILRSVIREQDSIGIEDLAANDIEAISFIYNIPLWLINLWISEFGRDKTEDLCAWFNEQ 186

Query: 176 LYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
             +   +             +      +         I +     S+     F +G    
Sbjct: 187 PKLTARINTILIDIPQCLTMLNEQGWAVTQDSNYEDIIYINSHRGSLEKSEAFIKGYITF 246

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
            D ++ +  +L        +LD CAAPGGK+  +   + +   + + D+ + ++E +  N
Sbjct: 247 MDKASMLVARLVNPQPGERILDCCAAPGGKSMYMATLMNNVGSLMSCDIHEHKIELMNSN 306

Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            DRL          DA          FD VLVDAPCS  G +++  D+ W +    + + 
Sbjct: 307 ADRLGASIVHTKVQDATKLPDSWNSYFDRVLVDAPCSGLGILQKKLDMRWRKQESILSEL 366

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L +    VK  G +++S C+L+ +++EEVV+  L+       ++P+   +   
Sbjct: 367 PSLQLAILERAAMTVKEKGYLIYSTCTLNYKENEEVVEAFLQKHK-EFSIIPVADDFPLK 425

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  S  G I   P         +  MDGFF V ++R+
Sbjct: 426 -------SNSGMITTYP--------PTDDMDGFFMVKMQRI 451


>gi|49474771|ref|YP_032813.1| SUN protein (Fmu protein) [Bartonella quintana str. Toulouse]
 gi|49240275|emb|CAF26748.1| SUN protein (FMU protein) [Bartonella quintana str. Toulouse]
          Length = 447

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 195/444 (43%), Positives = 271/444 (61%), Gaps = 9/444 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V   LL  V+ K  SL  L D E+G   +  LS RD++L RAI+   LR   +
Sbjct: 7   PGLTVRQVCVRLLGAVLDKHTSLAGLTDNEHGHPQYLGLSHRDRLLCRAILGAALRHRGQ 66

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I A L   L   LP + +SLQ LL +SVAQILYLD+ D+A +DLAV  AK D   R F+ 
Sbjct: 67  ITAALSRFLTRPLPLQAFSLQHLLHISVAQILYLDIPDHAAIDLAVRVAKIDPRMRRFSG 126

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN +LR V+RE + L +++  I  IP WF + L + YGKE+   I         +DLTV
Sbjct: 127 LVNVLLRNVAREAVFLCRKVPTIEEIPGWFGQLLVSTYGKEKADQILAIQSLEPPLDLTV 186

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  ++LP G +RL  L  S+  LPG+A+G WW+QD +A++P  L G +  
Sbjct: 187 KSDSVGWAERLGGIILPNGSVRLSRLNCSVSELPGYADGDWWIQDFAAALPACLLGNIYG 246

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V+DLCA+PGGKTAQL + GA VTA+D+S  RL++L+ N+ RLH       E D  ++ 
Sbjct: 247 KQVVDLCASPGGKTAQLALQGADVTAVDLSAHRLKRLKENMKRLHFS-VRYHEGDVKNFH 305

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           PK+LFDA L+DAPCSSTGTIRRHPD+LWT+   D++K A  Q  LL+  I+ VK GG +V
Sbjct: 306 PKRLFDAALLDAPCSSTGTIRRHPDILWTKSMHDVIKLAALQYDLLVAAIALVKKGGRIV 365

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           FSNCSL +++ E++++K+L +    V L P+ +   +   +A  LS +G +R TP     
Sbjct: 366 FSNCSLAREEGEDLIEKILSTC-NDVVLEPICAE--EMGALAHLLSAKGILRTTPADFCH 422

Query: 423 IDGVSS-----GMDGFFAVALRRL 441
            +  +      GMDGFF    R++
Sbjct: 423 ENFDAEKKMFLGMDGFFTARFRKV 446


>gi|115522058|ref|YP_778969.1| sun protein [Rhodopseudomonas palustris BisA53]
 gi|115516005|gb|ABJ03989.1| sun protein [Rhodopseudomonas palustris BisA53]
          Length = 449

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 170/439 (38%), Positives = 245/439 (55%), Gaps = 5/439 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR +++ +L  V+ KR  L   LD        + LS RD+ L+R +V   LR L  
Sbjct: 13  PGLAARRIAADILDGVLHKRRMLDDQLDGPAAHPGLKTLSDRDRALMRRLVATILRKLGT 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  VL  +L   +P      Q  L +  AQIL+++V D+A VDL+V   + D+    +A 
Sbjct: 73  LGHVLSRLLDRGVPTDAPRAQSALLIGAAQILWMEVPDHAAVDLSVRLVQSDRRAAKYAG 132

Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE   L+  + G    +P W   R    YG+E    I+ A      +DLT
Sbjct: 133 LVNAVLRRCAREGQPLIAEVQGQPIDLPPWLFARWSAHYGEETARKIALALGEEPSLDLT 192

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK DIE WA +L+  +LPTG +R   L  S+  L G+ +G WWVQDA+A++P +LFG L 
Sbjct: 193 VKSDIEAWAARLHGEILPTGTLR-TALQGSVKMLHGYEDGQWWVQDAAAALPARLFGALQ 251

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              +LDLCAAPGGKTAQL + GA VTA+D S  R+ +L+ NL RL L  E ++       
Sbjct: 252 GQRILDLCAAPGGKTAQLALGGANVTAIDRSPNRVARLKENLARLSLKVETVVADATEWD 311

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD VLVDAPCSSTGTIRRHPD+ W +   DI      Q +LL +  S +KPGG +
Sbjct: 312 GGDTRFDGVLVDAPCSSTGTIRRHPDIAWLKQEADIATLGALQARLLQKASSLLKPGGTL 371

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL+ ++ E      L ++   +  +P+  A  +   +A  ++ +G +R  P  L 
Sbjct: 372 VYCTCSLEPEEGE-QAIAALLAADATLRRLPIEPA--EVAGLAEIVTADGDLRTLPCHLP 428

Query: 422 KIDGVSSGMDGFFAVALRR 440
             D   +G+DGF+A  L +
Sbjct: 429 HPDAKLAGLDGFYAARLVK 447


>gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4]
 gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4]
          Length = 444

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     +    + ++D  L+  +V  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKN---TIDRKDIGLLTEMVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q+LYLD V + A +  AVE AKR + ++  + 
Sbjct: 59  DYYLQPFLRKKVE---AWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKR-RGHKGISG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE           ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSLEEIENPVERLAIATSHPMWLVQEWASEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKVTVEEAVALLADEGIEAKRGELSEDAIQIERGNVAHTEAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +        +VLD CAAPGGKT  +        KV +LD+   ++  +     
Sbjct: 235 ESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAK 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   + + +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLGLENVETMALDARKVQEHFANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P       +     + +
Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIKQFLQEHPEFEWDTTIKDRMPEKL 414

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG +RI P             DGF+   LR+ +
Sbjct: 415 N---PYIDEGQVRILPHYFA--------TDGFYIACLRKKV 444


>gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98]
          Length = 444

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 197/461 (42%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S      ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLMQVEKSGAYSNLLLNHLIEKSTIH---KKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L     +    ++ LLR+S+ Q+LYLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLRK---KVDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSREKIE-------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE +         ++R+A     P W  +     YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSLDELKDPVERLAIAMSHPTWLVQEWVAAYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T            + A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAIDLLNQEGVEAKRGDLSDDAIQIEKGNVAHTEAFQKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         +LD CAAPGGKT  +        KV +LD+   ++  ++   +
Sbjct: 235 ESSMLVARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDLHDHKVRLIKQQAN 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   ++  D  + +
Sbjct: 295 RLGLENVETKALDARKVQEHFQNESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+ +L +    +K GG +V+S C+++K ++E+VV   L+  P   E     +   +  
Sbjct: 355 TIQQTILDKVAPLLKTGGRLVYSTCTIEKIENEQVVANFLQKHP---EFEWDTTMQERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       +G ++I P             DGF+   LR+ +
Sbjct: 412 EKLRPYINKGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis
           str. A2012]
          Length = 444

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R ++   L  V +       LL+     S    + ++D  L+  IV  T++    +
Sbjct: 2   RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A 
Sbjct: 59  DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +     YG E    + +  + P
Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLP 174

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIXKGNVAHTDAFKKGFLSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         +LD CAAPGGKT  +        +V +LD+   ++  ++   +
Sbjct: 235 ESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 295 RLXLENVETKALDARKVQEHFANEXFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 355 MIQFAILEKXAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444


>gi|238896785|ref|YP_002921530.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae NTUH-K2044]
 gi|238549112|dbj|BAH65463.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 431

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R +++  +  V+ K  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKNINLRSLAAQAIEQVVEKGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++  ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLISKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++              + P+W  +RL+  + ++    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEALLAEFAEHENRYLHPKWLLKRLQQAWPQQWQEIVEANNQRPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   LN   L                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   ++     N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 VKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L    + +KPGG +V++ CS+  +++ + +   L  +P   EL    +         
Sbjct: 354 AEILNATWTHLKPGGTLVYATCSILPEENSQQIAAFLARTP-DAELHATGTPASPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------QQNLPGVEEGDGFFYAKLIK 428


>gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 447

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 211/463 (45%), Gaps = 39/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R ++   L  + + +     LL      +    LS +D+ L+  +V  TL+  
Sbjct: 1   MKKN-SVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQDRALLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  + QLLR+S+ Q+ YL+ + D A +  AVE AK  + ++ 
Sbjct: 57  IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN +LR + RE         + ++R+A  +  PEW  +   + YG +    I    
Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWTDAYGFDAAEKICRIH 174

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWW 224
           + P    L V     D      ++ A  +      L E     L  SI     F  G   
Sbjct: 175 LIPPRQTLRVNQMKADRADLLDQMAAEGIEVENGDLAEDAVKLLKGSIAGTHFFQNGEVS 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +        +VLD CAAPGGK+A +   + +   VT+LD+ K +++ ++ 
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKE 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             DRL L   D   MDA           FD +LVDAPCS  G IRR PD+ +T+  DD  
Sbjct: 295 AADRLGLTIIDAKTMDARKAGETFENGQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDST 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q  +L +    VK GG +V+S C++D+ ++EEV+   ++  P      P  S   
Sbjct: 355 RLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENEEVIHAFIQEHPDF---EPDLSLEK 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  + A     +G ++I P           G DGFF  ++R+ 
Sbjct: 412 RLPEKARPFVRDGRVQILPHYF--------GTDGFFICSMRKK 446


>gi|28210910|ref|NP_781854.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
 gi|28203349|gb|AAO35791.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
          Length = 454

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/455 (24%), Positives = 200/455 (43%), Gaps = 41/455 (9%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R V+  +L  V  K       L+          L+++D+  +  +V  T+++   ID +L
Sbjct: 17  RKVAIEVLDAVFLKNAYSNIALNNALNKYK---LNEKDKAFITELVYGTIKYRHTIDTIL 73

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  +   +      +  +LR+ + Q+ YLD V  +A V+  VE  K   +++   KL+N 
Sbjct: 74  NSYIKKGIKSVDKYVLNILRIGIYQLRYLDKVPSFAAVNECVELGK--VKSKGTGKLING 131

Query: 127 ILRRVSREKIELLQRIA-------GISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +LR   R K       +            P+W  +     YG+E++  I     S   I 
Sbjct: 132 VLRNYIRNKDPKYYDESNLVEKLSFEYSYPKWMIDLFLKQYGREKIEEILKGLNSIPSIT 191

Query: 180 LTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           + V      +    N            L            +I   P F EG+  VQD SA
Sbjct: 192 VRVNNIKSDYESVWNSLEDNNYNIEEGLVCPEAIRIIKGRAIEKNPLFKEGLITVQDESA 251

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +        +N++V+DLC+APGGKT  +   + +  KV A D+ + +L+ ++ N +RL 
Sbjct: 252 MLVAGAMDLEDNMNVMDLCSAPGGKTTHISEIMNNTGKVLAFDIHENKLDLIKQNKERLG 311

Query: 288 LYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +   D+I  D   Y  K     + +L+DAPCS  G IR+ P++ +T+   D+      QR
Sbjct: 312 VKNIDLILGDGTLYNKKYSEFANRILIDAPCSGLGIIRKKPEIKYTKSAKDLKSIVHIQR 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L  G  ++K  GI+++S C+L+K+++ E V+  L+  P       +   +  ++D   
Sbjct: 372 KILENGAKYLKKNGILLYSTCTLNKKENIENVKWFLKEFPNF----KIEKIFLGNLD-NF 426

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                G + I P+           MDGF+    ++
Sbjct: 427 IYDEYGTLTILPNEY---------MDGFYIAKFKK 452


>gi|251788002|ref|YP_003002723.1| 16S rRNA methyltransferase B [Dickeya zeae Ech1591]
 gi|247536623|gb|ACT05244.1| sun protein [Dickeya zeae Ech1591]
          Length = 431

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 130/459 (28%), Positives = 219/459 (47%), Gaps = 44/459 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++ +L  V+ +  SL+ LL +   D     +S++D+ L++ I    LR L
Sbjct: 1   MKSTYNLRSIAATVLVQVVEQGQSLSQLLPVFQRD-----ISEKDRGLLQEICFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P++D  L  ++   L  K+  L  LL V + Q+++  +  +A +   V  A   K  +  
Sbjct: 56  PQLDWYLRQLMAKPLTGKQKVLHYLLMVGIYQLIHTRIPPHAALAETVNAAVTLKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ EL QR+         P+W  +RL+  Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEELQQRLQNNTARYSHPDWLLQRLKKAYPDQWEQIIDANNQHPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    E +   L    +                P ++  LPGF +G   VQDAS
Sbjct: 175 WLRVNRLHHSREAYLVLLQEKGIEAHPHPFYTDAIRLITPCAVSGLPGFDQGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N+  +LDLCAAPGGKT  ++     A+V A+DV ++RL++++ NL RL 
Sbjct: 235 AQGCIHWLSPKNHEDILDLCAAPGGKTTHILEAAPQARVLAVDVDEQRLKRVKENLQRLR 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A D+   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHA-DVKCGDGRTPEAWCADQCFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           + +L      +K GG +V++ CS+  +++ + +   L+  P  +                
Sbjct: 354 QAILEAIWPRLKNGGTLVYATCSVLPEENSQQIAAFLQHHPDAIL-------------AD 400

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              +    I++ P        +    DGFF   L +  Q
Sbjct: 401 TGNTTSPGIQVLP--------MPEDGDGFFYAKLVKSGQ 431


>gi|152972197|ref|YP_001337343.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|224493256|sp|A6TEU2|RSMB_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|150957046|gb|ABR79076.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 431

 Score =  276 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 211/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R +++  +  V+ K  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKNINLRSLAAQAIEQVVEKGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++  ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLISKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++              + P+W  +RL+  + ++    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEALLAEFAEHENRYLHPKWLLKRLQQAWPEQWQEIVEANNQRPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   LN   L                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   ++     N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 VKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + +   L  +P   EL    +         
Sbjct: 354 AEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP-DAELHATGTPASPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------QQNLPGVEEGDGFFYAKLIK 428


>gi|262040752|ref|ZP_06013983.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041896|gb|EEW42936.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 431

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R +++  +  V+ K  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKNINLRSLAAQAIEQVIEKGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++  ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLISKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++              + P+W  +RL+  + ++    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEALLAEFAEHENRYLHPKWLLKRLQQAWPEQWQEIVEANNQRPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   LN   L                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   ++     N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 VKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L    + +KPGG +V++ CS+  +++ + +   L  +P   EL    +         
Sbjct: 354 AEILNATWAHLKPGGTLVYATCSILPEENSQQIAAFLARTP-DAELHATGTPASPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------QQNLPGVEEGDGFFYAKLIK 428


>gi|210622413|ref|ZP_03293145.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
 gi|210154229|gb|EEA85235.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
          Length = 441

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 108/460 (23%), Positives = 205/460 (44%), Gaps = 43/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR  +  +L  +  ++      ++  + +     +S +D+ L   +V   +     +D
Sbjct: 1   MNAREAAFKILCDIEIEKNYSNMAINKIFKNEK---ISDKDKGLATELVYGVIENRKYLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++ +    + +    ++ +LR+   QIL+LD + D+A V+  V+ A +          
Sbjct: 58  FIINKLSKIKVKKMSSFVKIILRMGTYQILFLDKIEDHAAVNETVKLASKYDG--KSKGF 115

Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
           VN+ILR   R+K  +            A      +W  E     +G E    + +A    
Sbjct: 116 VNAILRNEIRQKRTIKYIDIEDPIRRLAVKYSYQQWIVEDWVKNFGIEFAEELLEALNER 175

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQ 226
             + +       D  +   +     +      L       E  + I S   + EG++ VQ
Sbjct: 176 PDLYVRTNTLKIDRNSLLKEFEKEGIKASKAMLPEEAIMVENFKGIESSRLYKEGLFTVQ 235

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +  ++        VLD+C+APGGK+  +   + +  K+ + DV + +++ ++   
Sbjct: 236 DISSMLVAKVVAPKEGDMVLDMCSAPGGKSTHMAELMKNTGKIVSRDVFEHKIKVIKAAA 295

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL +   +  E DA +      + FD VL D PCS  G IRR P++ +     ++V   
Sbjct: 296 KRLGITNIEAEEFDAANLDENSIEKFDCVLTDVPCSGLGIIRRKPEIKYKAKE-ELVDLP 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q K+L     +VK  G +V+S C++   ++ EVV+K L+ +P   ELVP+     + I
Sbjct: 355 KIQSKILENASKYVKINGTLVYSTCTVQDCENIEVVEKFLKENPN-YELVPI-----EGI 408

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++      +G+I+I P++         GMDGFF   ++R+
Sbjct: 409 NVDPEEQEKGYIKIYPNV--------HGMDGFFIAKMKRV 440


>gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
           sputigena ATCC 35185]
 gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185]
 gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
           sputigena ATCC 35185]
 gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185]
          Length = 443

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 111/459 (24%), Positives = 191/459 (41%), Gaps = 43/459 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V  K       L      +    LS+ D+     +     +    +D 
Sbjct: 3   KARETALKALHEVNEKGAYANVALARSLRAAK---LSEVDRRFATELAYGAAKAGGTLDW 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L   L   L +    ++ +LR+ + Q+ +L  V   A  + AVE  KR   +    K V
Sbjct: 60  ILRRYLNRPLSKIPPMVRDILRLGIYQLFFLARVPASAACNTAVEMTKRC-SHAGTVKFV 118

Query: 125 NSILRRVSREKIELLQRIAGIS---------IIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR  +RE  +                    PEW   R    +G E   A+ +   + 
Sbjct: 119 NAVLRTAAREPEKAAFPTGKAHEAENLALSLQHPEWLVRRWIEQFGYEEARALCEFDNAQ 178

Query: 176 LYIDLTVKF---DIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQ 226
             + L         +    +L+   +       T    L     S+ +L    +G++ VQ
Sbjct: 179 ATLSLRTNTLKITRDKLLERLSKEGVEAEPSAWTPEGILFLRHGSLDALESLQQGLFQVQ 238

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +   +        VLD+C+APGGKT  +   +    ++ ALDV + ++ ++  N 
Sbjct: 239 DESSMLVAHVLAPEPGEFVLDVCSAPGGKTTHIAASMGDCGRIVALDVHEHKMRRIAENC 298

Query: 284 DRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +RL + + + + +DA +      +  D VLVDAPCS  G +RR PD  W +  DD+   A
Sbjct: 299 ERLGIKSVEPLLLDAREAGRRFPRQADRVLVDAPCSGLGVLRRKPDARWRKRPDDLAALA 358

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR++L      VK GG++V+S C+++++++E VV+  L             S      
Sbjct: 359 RLQREILSSAAEAVKSGGVLVYSTCTIEREENEAVVEDFLARHEEF-------SLENAGE 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + +   PE  +++ P           G DGFF   +RR
Sbjct: 412 LLPLKKRPEQMLQLYPQ--------RDGTDGFFIARMRR 442


>gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 446

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 113/459 (24%), Positives = 198/459 (43%), Gaps = 41/459 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR ++  +L  + R        LD     S+   L   D+ L   IV   +R    +DA
Sbjct: 3   NARQLALLILRDIDRSSAYPDRALDRHLSASSLNCL---DKALTTEIVYGIVRRQRTLDA 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +LD +   +  ++   L+++L + + Q+ YL  +   A V+ AVE  K     +  A +V
Sbjct: 60  LLDRLGKKTAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGK-LAAVV 118

Query: 125 NSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACIS 174
           N +LR+  R        +            +   P+W  +   + +G      +      
Sbjct: 119 NGMLRQYLRLTANGDDPLILPENTASRLGILHSFPDWLVQLWLDRFGVTETEQLCQWFNR 178

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGG------IRLKELPESIVSLPGFAEGVWWV 225
              +D+ +       E   ++L +  +           RL     +I  L GF  G + +
Sbjct: 179 SPDLDIRINPLKTSREALENELESANITFNHLKLPLACRLTSGLGNIERLEGFRAGNYTL 238

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD SA +   L       +++D CAAPGGKT  +   +    ++ A D +  RL +L  N
Sbjct: 239 QDISAQLVTHLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEAN 298

Query: 283 LDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           + RL L A +I   D+ D      + D VL+DAPCS  GT+ + PD+ W +  +++   A
Sbjct: 299 IKRLDLKAIEIHLGDSRDRPQWCGIADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLA 358

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL    ++VKP GI+V++ C+L+  ++E V+++ L + P      P +++     
Sbjct: 359 KRQGELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMAPPDSNSC---- 414

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +   +  G I + P             DGFF   L +
Sbjct: 415 -FSEYYTETGAIEVLPH--------RHNQDGFFMAKLVK 444


>gi|330002246|ref|ZP_08304257.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
           92-3]
 gi|328537385|gb|EGF63634.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
           92-3]
          Length = 431

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 211/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R +++  +  V+ K  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKNINLRSLAAQAIEQVVEKGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++  ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLISKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++              + P+W  +RL+  + ++    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEALLAEFAEHENRYLHPKWLLKRLQQAWPEQWQEIVEANNQRPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   LN   L                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   ++     N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + +   L  +P   EL    +         
Sbjct: 354 AEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP-DAELHATGTPASPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------QQNLPGVEEGDGFFYAKLIK 428


>gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3]
 gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3]
          Length = 426

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 206/448 (45%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ ++  V+ K ISL+  L  +         S +D+ L+  +    +R LP++D
Sbjct: 1   MNLRALAAKVVFQVLEKGISLSVALPDQQRHLE----SGKDKALMAELCYGVMRHLPQLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   +   L  K+  L QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KLVSDCMSKPLKGKQRILHQLLLVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R++  L      ++   P W  +RL+  Y +     +  +   P        
Sbjct: 116 NGVLRNIQRQEKPLPTDNETLALNTPAWIIKRLKAAYPESWKEIVEQSHQRPPMWLRSNK 175

Query: 182 VKFDIETWAHKLNAVMLP-----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +    + +   L  V +      +    L E P+ ++ LPGF EG   VQD +A     L
Sbjct: 176 LSQTRDEYLASLAEVEIQASAGKSSDAILLESPKDVLQLPGFEEGTASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292
              ++   VLD CAAPGGKT          ++ A+D    RLE+++ NLDRL L A    
Sbjct: 236 LAPIDGELVLDACAAPGGKTCHLLEQAPNIELVAVDFDANRLERVQQNLDRLSLNAKLIH 295

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               D   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q K+L    
Sbjct: 296 GDAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELASLQSKILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++E+ ++  L  +     LVP++               +  
Sbjct: 356 QWLKPGGTLLYATCSILPQENEQQIRAFLERA-NDATLVPIDEQNHP---------DDIG 405

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP +          MDGF+   L +
Sbjct: 406 WQITPGL--------ENMDGFYYARLVK 425


>gi|295706330|ref|YP_003599405.1| ribosomal RNA small subunit methyltransferase B [Bacillus
           megaterium DSM 319]
 gi|294803989|gb|ADF41055.1| ribosomal RNA small subunit methyltransferase B [Bacillus
           megaterium DSM 319]
          Length = 446

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/464 (25%), Positives = 206/464 (44%), Gaps = 40/464 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R ++  +L  + + +     LL+        R +  +D  L+  IV  T++  
Sbjct: 1   MSK-YNVRDIALDILLAIEKNQAFSNLLLNNSIQK---RGIQGKDAGLLTEIVYGTIQRR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L +   + +  ++ LLR+S+ Q++YLD V D A++  AVE AK+ + ++ 
Sbjct: 57  DTLDYGLAPFLKNP-KKLQPWVRVLLRLSLYQMVYLDRVPDRAILHEAVEIAKK-RGHKG 114

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            A +VN +LR + R       E    ++R+A  +  P W  +R    YG ++   I  A 
Sbjct: 115 IASMVNGVLRNIQRSGTPSLEEIQNPVERLAIETSHPLWLVKRWVEQYGLDKTRGICLAN 174

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWW 224
           +      + V             L    +           L+    +      F EG++ 
Sbjct: 175 LMAPKQTIRVNSARFTQNEVKEALEKEGIVVEPGHFVEEALEVQKGNAAHTQAFREGMFT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           VQD S+ +     G      +LD CAAPGGK+      + +  KV +LD+   +++ +  
Sbjct: 235 VQDESSMLVAHALGAEAEELILDSCAAPGGKSTHIAEQLRNSGKVISLDIHDHKVKLIAQ 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             +RLHL   +    D+        K++FD +LVDAPCS  G +RR PD+ +T+   DI 
Sbjct: 295 QAERLHLTNIEPTVQDSRKAGEQFDKEMFDRILVDAPCSGFGVMRRKPDLKYTKTEQDIK 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q+ +L      +K GG +V+S C++D+ ++ +VV   L       +   L +   
Sbjct: 355 QLARIQQDILNAVAPLLKKGGTLVYSTCTIDRDENGDVVAAFLADHADFQKDETLAARMP 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + +   +     G I++ PD            DGF+   L++ +
Sbjct: 415 QKLKQNV---KHGEIQLLPDAQ---------SDGFYIACLQKKV 446


>gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
 gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
          Length = 425

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/447 (27%), Positives = 205/447 (45%), Gaps = 34/447 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ +   V+ K ISL+  L  +         S +D+ L+  +    +R LP++D
Sbjct: 1   MNLRALAAKVAFQVLEKGISLSVALPDQQKHLE----SGKDKALLAELSYGVMRHLPQLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   +   L  K+  + QLL +   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KLVSDCMSKPLKGKQRIVHQLLLIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGISI-IPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R++  L      ++   P W  +RL+  Y +     I  +   P     +  
Sbjct: 116 NGVLRNIQRQEKPLPTDNDTLAFNTPSWIVKRLKAAYPENWQEVIEQSHQRPPMWLRNNK 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                + +   L      A    +    L E P  +  LPGF +G   VQD +A     L
Sbjct: 176 RSQTRDEYLAALAEIDIPASAGKSSDAILLESPRDVAQLPGFDQGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDI 293
               +   VLD CAAPGGKT  L+  +  ++ A+D  ++RLE+++ NLDRL L A     
Sbjct: 236 LAPKDGELVLDACAAPGGKTCHLLELANIQLVAVDFDEKRLERVQQNLDRLSLDAKLVHG 295

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q K+L     
Sbjct: 296 DAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQSDIDELAALQSKILDHCWQ 355

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           ++KPGG ++++ CS+  Q++E+ ++  L  +     L+P++       D+   ++     
Sbjct: 356 WLKPGGTLLYATCSILPQENEQQIRSFLERA-DDATLIPISE-QPHPDDIGWQIT----- 408

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
                        +  MDGF+   L +
Sbjct: 409 -----------PGTENMDGFYYARLVK 424


>gi|17986519|ref|NP_539153.1| 16S rRNA m(5)C 967 methyltransferase [Brucella melitensis bv. 1
           str. 16M]
 gi|17982123|gb|AAL51417.1| 16S rRNA m(5)c 967 methyltransferase [Brucella melitensis bv. 1
           str. 16M]
          Length = 424

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 184/429 (42%), Positives = 250/429 (58%), Gaps = 10/429 (2%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           ++ K  SL  L D  +G   +  L  RD+ LVRAI+   L     I+  ++  L   LP 
Sbjct: 1   MIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALHNRGSIERAINKRLDRPLPE 60

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR-VSREKI 136
              +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A LVN++LRR    ++ 
Sbjct: 61  NAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKER 120

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196
            L       + +PEWF + + + YG E+   I         ID TVK D + WA KL  V
Sbjct: 121 ALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDFTVKGDAKAWAEKLGGV 180

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
            LP G +RL+ +  ++  LPGFAEG WWVQD +AS+P +L   +    V DLCAAPGGKT
Sbjct: 181 ALPNGSVRLQTVESNLTDLPGFAEGEWWVQDVAASLPARLMDDIKGKRVADLCAAPGGKT 240

Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316
           AQL++ GA VTALD+S+ RL++L  NL+RL   A+ +   +  D+ P +LFDAVL+DAPC
Sbjct: 241 AQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMDFKPDELFDAVLLDAPC 299

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           SSTGT+RRHPDV WT+   DI K A  Q KLL    + VKPGG++VFSNCSL   + EE+
Sbjct: 300 SSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGVIVFSNCSLHPLEGEEM 359

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE----KIDGVSSGMDG 432
            +K     P    L P          +   ++ EG++R TP  L       +   +GMDG
Sbjct: 360 ARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADLPPDRLDGNPHMAGMDG 415

Query: 433 FFAVALRRL 441
           FFA   +R+
Sbjct: 416 FFAARFKRV 424


>gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 426

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 205/454 (45%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RDQ L++ I   +LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGQSLSNALP-----AAQQQVKPRDQALLQEICYGSLRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  SIANELMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKTLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R +       +   AG    P W  + L++ Y ++    I      +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDAHAMSHNAGKYGHPSWLLKLLQDAYPQQWQDIIEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  +  LPGF +G   VQDA+A +
Sbjct: 175 VNQQHHSRDEYQQLLKNENIDSSIHSEASDALKLAAPCDVTKLPGFEKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA        A++ A+D    RL+++  NL RL L A
Sbjct: 235 SINYLTPKDGELILDCCAAPGGKTAHILERTQDAQIVAIDCDDSRLKRVHDNLQRLQLKA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      D+   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++L
Sbjct: 295 QVICGDARKPKDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRGDDIAALAKLQSEIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++ E V+  L  +                  +  +  
Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENSEQVKAFLARTANA--------------QLEGSPV 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P            MDGF+   L ++ 
Sbjct: 401 DNPGRQVLPG--------EEDMDGFYYAILTKIA 426


>gi|260466787|ref|ZP_05812972.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029399|gb|EEW30690.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 475

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 197/426 (46%), Positives = 263/426 (61%), Gaps = 5/426 (1%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  R  L  L D E G   ++ L  RD+ LVRAI+   LR+   I  +L   L   LP 
Sbjct: 54  VIDARTPLDGLTDHENGHPQYKALDPRDRGLVRAILVTALRYRMTITGLLARRLEKPLPP 113

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L V+ AQIL+LD+ D A VDLAV  AK D   + F+ LVN +LR ++R K  
Sbjct: 114 NASALSHILHVAAAQILFLDIPDSAAVDLAVTHAKSDPRTQRFSGLVNGVLRTLARAKDT 173

Query: 138 L-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196
                +A     P+WF +RL+  YG ++   I  A      +D TVK D E WA KL  +
Sbjct: 174 ELPAALAATDEAPKWFSDRLKAAYGADKAKQILAAHRHEAPVDFTVKADPELWAEKLGGI 233

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
           +LPTG +R++ L   ++ LPGFAEG WWVQDA+AS P +LFG +  L V DLCAAPGGKT
Sbjct: 234 VLPTGTVRVENLAGPVIELPGFAEGAWWVQDAAASFPARLFGDVRGLRVADLCAAPGGKT 293

Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316
           AQLI++GA+VTA+D SK RL +L  NLDRL L A DI++ D   Y P +LFDAVL+DAPC
Sbjct: 294 AQLILAGARVTAVDTSKNRLARLAQNLDRLGL-AADIVQADLIKYEPAELFDAVLLDAPC 352

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           SSTGT+RRHPDV WT+   D+ K A  Q +LL + ++ V+PGG +VFSNCSLD  + E +
Sbjct: 353 SSTGTVRRHPDVPWTKTAADVEKLADLQGRLLARAVTLVRPGGRIVFSNCSLDPIEGENL 412

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
            +  L+++P  V   PL+      ID    L+ +G +R TP  L+      SG+DGFFA 
Sbjct: 413 HRAFLKATPT-VADDPLHQGEIAGID--SFLTAQGTLRTTPADLDLGAPERSGLDGFFAA 469

Query: 437 ALRRLI 442
            +RR +
Sbjct: 470 RMRRAV 475


>gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008]
 gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008]
          Length = 451

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/461 (22%), Positives = 185/461 (40%), Gaps = 46/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N RL++   LS + R        L           LS  D+     +V   +R    +DA
Sbjct: 11  NIRLLAVKALSEINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ F     + +    + ++LR+ + QI+Y+D V + A V+ +V+ AK+    R  +  V
Sbjct: 68  IIVFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 125

Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR V RE   +            I+ I   P W         GK++ + +       
Sbjct: 126 NAVLRSVLRESDSISIGELAKSEAEEISFIYNQPLWLVNFWIKEMGKDKTVDLCAWFNEQ 185

Query: 176 LYID---LTVKFDIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225
             +     TVK  IE    +L  +               +      +       +G    
Sbjct: 186 PRLTSRINTVKVSIEDCLKELEDLDWIVEQDTYIPEVVYIDGHQGHLEKAKPVLDGHITF 245

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
            D ++ +   +        +LD CAAPGGK+  +   + +   + + D+   +LE +  N
Sbjct: 246 MDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLELINQN 305

Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            +RL +        D        K+ FD VLVDAPCS  G +++  D+ W +    +++ 
Sbjct: 306 AERLGVSIISTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIEL 365

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L +    VK  G +V+S C+++  ++E V+ K L      +    ++   +K 
Sbjct: 366 PPLQLEILEKASKMVKVNGYLVYSTCTMNSGENEAVLNKFLAIHKNFI----IDPVSYKG 421

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              A+    +G I   P            MDGFF   ++RL
Sbjct: 422 APQAI----DGMITTYP--------PRDHMDGFFMARMKRL 450


>gi|288957078|ref|YP_003447419.1| Sun protein [Azospirillum sp. B510]
 gi|288909386|dbj|BAI70875.1| Sun protein [Azospirillum sp. B510]
          Length = 431

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 172/443 (38%), Positives = 249/443 (56%), Gaps = 18/443 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  + + AR V+  LL  V+RK +      D          L  RD+  VR +V   LR 
Sbjct: 1   MTDTSLAARGVALDLLRDVLRKSVPFDDAFD---AHPELASLQPRDRGFVRLLVATVLRR 57

Query: 60  LPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
           L +ID ++   L    LP+   ++  +LR+  AQ+++L+   +A VD AVE A       
Sbjct: 58  LGQIDEMIQASLAKPGLPK--AAIHDMLRLGTAQLVFLNTPAHAAVDTAVELAAARNA-A 114

Query: 119 HFAKLVNSILRRVSREKIELL-QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +  L+N++LRR+ RE  E+  ++ AG    P+W      + YG  R   I +A +    
Sbjct: 115 PYKGLINAVLRRIGREGAEMAARQDAGRLNTPDWLWLSWRSAYGTARTRGIVEAHLHEAP 174

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           +D+TVK D   WA +L A +LPTG +R      S++ LPGF +G WWVQD +AS+P +LF
Sbjct: 175 LDITVKSDPAGWAERLGASLLPTGSLRRPPG-GSVIELPGFEDGEWWVQDLAASLPAKLF 233

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           G L    V DLCAAPGGKTAQL+V GA+VTA+D S RRLE++  NL RL L AE ++  D
Sbjct: 234 GDLAGKRVFDLCAAPGGKTAQLVVQGAQVTAIDRSARRLERVTENLKRLRLEAE-VLAAD 292

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A  + P+   DAVL+DAPCS+TG IRRHPD+L  +  DDI K A  Q +LL + +  V+P
Sbjct: 293 AATWEPEAPADAVLLDAPCSATGAIRRHPDILRVKTPDDIAKLARAQSRLLARSVELVRP 352

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +++  CS+  ++ E  V ++L      VE  P+ +       ++  ++  G +R  P
Sbjct: 353 GGTLIYCTCSIQPEEGEAQVARLLEQ-DGRVERWPVTADELGG--LSEPINEAGEVRSLP 409

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            ML  +     G+DGFF   LRR
Sbjct: 410 GMLADL----GGIDGFFVARLRR 428


>gi|294500982|ref|YP_003564682.1| ribosomal RNA small subunit methyltransferase B [Bacillus
           megaterium QM B1551]
 gi|294350919|gb|ADE71248.1| ribosomal RNA small subunit methyltransferase B [Bacillus
           megaterium QM B1551]
          Length = 446

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/464 (24%), Positives = 205/464 (44%), Gaps = 40/464 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R ++  +L  + + +     LL+        R +  +D  L+  IV  T++  
Sbjct: 1   MSK-YNVRDIALDILLAIEKNQAFSNLLLNNSIQK---RGIQGKDAGLLTEIVYGTIQRR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L +   + +  ++ LLR+S+ Q++YLD V D A++  AVE AK+ + ++ 
Sbjct: 57  DTLDYGLAPFLKNP-KKLQPWVRVLLRLSLYQMVYLDRVPDRAILHEAVEIAKK-RGHKG 114

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            A +VN +LR + R       E    ++R+A  +  P W  +R    YG ++   I  A 
Sbjct: 115 IASMVNGVLRNIQRSGTPSLEEIQNPVERLAIETSHPLWLVKRWVEQYGLDKTRGICLAN 174

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWW 224
           +      + V             L    +           L+    +      F EG++ 
Sbjct: 175 LMAPKQTIRVNSARFTQNEVKEALEKEGIVVEPGHFVEEALEVQKGNAAHTQAFREGMFT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           VQD S+ +            +LD CAAPGGK+      + +  KV +LD+   +++ +  
Sbjct: 235 VQDESSMLVAHALSAEAEELILDSCAAPGGKSTHIAEQLKNSGKVISLDIHDHKVKLIAQ 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             +RLHL   +    D+        K++FD +LVDAPCS  G +RR PD+ +T+   D+ 
Sbjct: 295 QAERLHLTNIEPTVQDSRKAGEQFDKEMFDRILVDAPCSGFGVMRRKPDLKYTKTEQDVK 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q+ +L      +K GG +V+S C++D+ ++ +VV   L       +   L +   
Sbjct: 355 QLARIQQDILNAVAPLLKKGGTLVYSTCTIDRDENGDVVAAFLTDHADFQKDETLVARMP 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + +   +     G I++ PD            DGF+   L++ +
Sbjct: 415 QKLKQNV---KHGEIQLLPDAQ---------SDGFYIACLQKKV 446


>gi|296447350|ref|ZP_06889277.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b]
 gi|296255129|gb|EFH02229.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b]
          Length = 467

 Score =  274 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 162/438 (36%), Positives = 241/438 (55%), Gaps = 6/438 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR+ ++H+++ V++    L      +        L  RD  L R+I +  +R L  
Sbjct: 34  PGLAARIAAAHVIADVVQGGRRLDERFSPQAVPQRVAGLDARDAALARSIASAAIRRLGT 93

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I   L  ++   LP++   L+  + V+ AQI +LD  D+A VDLAV  A+ + +   FA 
Sbjct: 94  IRHALAALMDKGLPKQGARLEWPMIVAAAQIFFLDTPDHAAVDLAVRAARLEPKTAPFAG 153

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN +LR + R + E L         P W  +R    YG+ +  A + A +    +D+TV
Sbjct: 154 LVNGVLRNLVRRREEFLDCDPLELDTPSWLAQRWTKTYGEAQARAFARAHMLEPPLDVTV 213

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K + E WA +L+ V++PTG +RL+ L E I  L G+ EG WWVQDA+A++P +L     +
Sbjct: 214 KSEPERWAERLDGVVMPTGSVRLRTL-EPIAGLEGYEEGEWWVQDAAAALPARLLRAEPD 272

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             +LD+CAAPGGKTAQL  + A VTALD S  RL+ L  NL R  L+A DI   DA  + 
Sbjct: 273 ERILDMCAAPGGKTAQLAQARALVTALDRSAERLKLLAANLQRARLHA-DIAVGDATSF- 330

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FDA+LVDAPCS+TGTIRRHPDV W +   D+   A  Q K+L +  + ++PGG +V
Sbjct: 331 QARPFDAILVDAPCSATGTIRRHPDVAWIKKPGDLDALASLQSKMLDRAAALLRPGGRMV 390

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CSL+ ++ E  V   LR  P  +  +P+++           ++ EG +R  P     
Sbjct: 391 YCTCSLEPEEGEAQVAAFLRRQP-DMRRIPIDAEGEGIPH--EFVTAEGDLRSLPSHWPA 447

Query: 423 IDGVSSGMDGFFAVALRR 440
            +    G+DGFFA    R
Sbjct: 448 EEPRLRGVDGFFAARFSR 465


>gi|167554205|ref|ZP_02347946.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205321540|gb|EDZ09379.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 429

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  L+   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLINEFATSDARFLHPGWLVKRLQNAYPTQWQRIIDANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|298292785|ref|YP_003694724.1| sun protein [Starkeya novella DSM 506]
 gi|296929296|gb|ADH90105.1| sun protein [Starkeya novella DSM 506]
          Length = 446

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 169/422 (40%), Positives = 232/422 (54%), Gaps = 14/422 (3%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           + K   L   L+    +     L +RD+ L R I    LR    + A++  +L   LP K
Sbjct: 37  LEKGRPLEEALERLTRE-----LDERDRGLARMIAATALRKFGTLRALIGSLLERGLPEK 91

Query: 79  KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
              ++ LL    AQIL++DV D+A VD +V  A     +  F  LVN++LRRV+RE   +
Sbjct: 92  AGRVETLLVTGAAQILFMDVPDHAAVDTSVALAAESPASAGFKGLVNAVLRRVAREGKAM 151

Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML 198
           L  +A     P+W  +     YG +  LAI+ A  S   +DLT K D   WA KL   +L
Sbjct: 152 LPDVADQ---PQWMVDGWTAAYGGKDALAIAHALASEAPLDLTAKDDAAGWAEKLGGKLL 208

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
            TG IRL E   ++ +LPGF EG WWVQDA+A++P +L       ++ DLCAAPGGKTAQ
Sbjct: 209 STGSIRLVEA-GNVTALPGFEEGAWWVQDAAAALPARLLHAKAGETIADLCAAPGGKTAQ 267

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           L  +GA VTALD S +RL++L+ NL RL L AE +             FD VL+DAPCS+
Sbjct: 268 LAATGAAVTALDRSGQRLKRLKQNLARLGLDAEIVEA--DAAAWKGGPFDGVLIDAPCSA 325

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           TGTIRRHPDV WT+   DI      Q ++L      VKPGG++V+S CSL+ ++ E+ V+
Sbjct: 326 TGTIRRHPDVAWTKAPADIASLGALQARILANAADLVKPGGVLVYSTCSLEPEEGEKQVE 385

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L + P  V       A  +    A  ++  G +R  P  L   D   +G+DGFFA  L
Sbjct: 386 ALLAARPDFVRD---PVAPGECGVAAEWINAAGELRTLPTHLPDADPRFAGIDGFFAARL 442

Query: 439 RR 440
           RR
Sbjct: 443 RR 444


>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
 gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
          Length = 452

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 127/462 (27%), Positives = 197/462 (42%), Gaps = 41/462 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
              N R  +  +L  + R+      L+D E        L+  D+ L   +V   LR    
Sbjct: 7   KRSNPRQSACSVLLRIQREGCYADQLMDRELESG---GLTGPDRGLFAELVFGALRRQGT 63

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +D +L  +L   L R +     LLRV + Q++YLD + + A V+ +V  AK+       +
Sbjct: 64  LDHILSSLLTQPLSRLEPQALILLRVGLYQLVYLDRIPESAAVNESVNLAKKTL--PRAS 121

Query: 122 KLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            LVN++LR   R   ++             A     P W   +  +  G E   A+++A 
Sbjct: 122 GLVNAVLRNYLRRGDDIPFPDPLAMPAESIAARHSHPLWLVRQWIDQLGVEEAEALAEAS 181

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVW 223
                + L         +    K +   +     R      L E    I SLPGF EG++
Sbjct: 182 SRQAPLALRANTLAISRDDLLVKFSTNGIQATPCRFSPHGILVEGRHQITSLPGFHEGLF 241

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD ++ +   L        +LD CAAPGGK   L   +    ++ A+DVS  +L  ++
Sbjct: 242 AVQDEASQMAGLLLDPRPGERILDACAAPGGKATHLAQLMNDRGELLAMDVSGVKLPLIQ 301

Query: 281 CNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
            +  RL +        D       P   FD VL+DAPCS  G IRR+P+  W    +D+ 
Sbjct: 302 ESAHRLGISIIRTRRADLLNSAAFPVDSFDRVLLDAPCSGLGVIRRNPEAKWRLRPEDLT 361

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  QR++    +  +KPGG +V+S CS  ++++E V+   L      V L  LN  Y 
Sbjct: 362 RLAETQRRMFANAVRMLKPGGRLVYSTCSTSREENEAVLHAFLSR-QDGVILEDLNQVYP 420

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +   + EG +R  P           GMDGFFA  L +
Sbjct: 421 C---WSELFTREGMLRSWPHC--------HGMDGFFAARLIK 451


>gi|168234465|ref|ZP_02659523.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470953|ref|ZP_03076937.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194457317|gb|EDX46156.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205331616|gb|EDZ18380.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 429

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|298492855|ref|YP_003723032.1| sun protein ['Nostoc azollae' 0708]
 gi|298234773|gb|ADI65909.1| sun protein ['Nostoc azollae' 0708]
          Length = 446

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 119/461 (25%), Positives = 199/461 (43%), Gaps = 46/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N R ++   L  V  K       LD          L   D+ L+  +V  ++R    +D
Sbjct: 2   TNPRQLAFIALKEV-HKGAYADVALDRVLQKFK---LPDNDRRLMTELVYGSVRRQRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D +      ++   L+ +L +   Q+ Y + +   A V+  VE AK +         
Sbjct: 58  TLIDKLATKKAHQQPPELRTILHLGFYQLRYQEKIPVSAAVNTTVELAKEN-GFSSLTGF 116

Query: 124 VNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           VN +LR+  R               ++R+  +   P+W  E      G +    +     
Sbjct: 117 VNGLLRQYLRLIESSSEPLKLPENPVERLGILHSFPDWIIEVWLEQLGLKETERLCAWMN 176

Query: 174 SPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVW 223
               IDL V     +     +A          +     G+RL      I +LPGF EG W
Sbjct: 177 KTPTIDLRVNILRSSLEKVESAFKSAGVLVRPIPYLPQGLRLISSTGPIKNLPGFREGWW 236

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD+SA +   L        V+D+CAAPGGKT  +   +    K+ A D +  RL +L+
Sbjct: 237 TVQDSSAQLVSHLLDPKPGNVVIDVCAAPGGKTTHIGELMGDKGKIWACDQTASRLRRLK 296

Query: 281 CNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            N+ RLHL + +I   D+ +      + D VL+DAPCS  GT+ RH D  W +    + +
Sbjct: 297 ENVQRLHLESIEICTGDSRNLTQFNNIADCVLLDAPCSGLGTMHRHADARWRQTPSSVQE 356

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            +  Q++L+    +F+K GG++V++ C+L   ++EEV+ + L  +P      P +     
Sbjct: 357 LSQLQKELISHTANFIKVGGVLVYATCTLHPMENEEVISQFLAVNPHWQIESPGSDLV-- 414

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  ++  GW+++ P   +        MDGFF V LR+
Sbjct: 415 ------DIASPGWLKVWPHQRD--------MDGFFMVRLRK 441


>gi|194443414|ref|YP_002042660.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|224493264|sp|B4SUR0|RSMB_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194402077|gb|ACF62299.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 429

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99]
 gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99]
          Length = 425

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 120/447 (26%), Positives = 200/447 (44%), Gaps = 34/447 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ +   V+ K  SL+  L  +         S +D+ L+  +    +R LP++D
Sbjct: 1   MNLRALAARVAFQVLEKGTSLSVALPDQQQHLE----SGKDKALLAELSYGVMRHLPQLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   +   L  K+  + QLL +   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KLVSDCMSKPLKGKQRIVHQLLLIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGISI-IPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R++  L      ++   P W  +RL+  Y +     I  +   P     +  
Sbjct: 116 NGVLRNIQRQEKPLPTDNDTLAFNTPAWIVKRLKAAYPENWQEVIEQSHQRPPMWLRNNK 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                + +   L      A    +    L E P  +  LPGF +G   VQD +A     L
Sbjct: 176 QSQTRDEYLAALAEIDIPASAGKSSDAILLESPRDVAQLPGFEQGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDI 293
               +   +LD CAAPGGKT  L+  +  ++ A+D  ++RLE+++ NLDRL L A     
Sbjct: 236 LAPKDGELILDACAAPGGKTCHLLELANIELVAVDFDEKRLERVQQNLDRLSLKAKLVHG 295

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q K+L     
Sbjct: 296 DAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQTDIDELASLQSKILDHCWQ 355

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           ++KPGG ++++ CS+  Q++E+ ++  L  +                I            
Sbjct: 356 WLKPGGTLLYATCSILPQENEQQIRSFLARADDATLFPISEQPNPDDIGW---------- 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           +ITP         +  MDGF+   L +
Sbjct: 406 QITPG--------TENMDGFYYARLVK 424


>gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
 gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
          Length = 446

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 119/460 (25%), Positives = 200/460 (43%), Gaps = 40/460 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R V+  +L  + RKR      L      +    LS +D  L+  +V  T++    +D 
Sbjct: 3   NVRNVALDVLIDIERKRAYSNLSLHHVIETN---ELSAQDVALLTELVYGTIQRRDTLDY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +  ++      ++ LLR+S+ Q++YLD + D AV+  AVE AKR + +R  A LV
Sbjct: 60  YLQPFIKGNIE---PWVRLLLRMSLYQMIYLDRIPDRAVLFEAVEIAKR-RGHRGIASLV 115

Query: 125 NSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR       R   +  +  +R+A  +  P W   R    +G +    + +    P  
Sbjct: 116 NGILRSVQRQGLRSLDDIKDESERLAIATSHPLWLVRRWIEQFGFDETKRMCEVNNFPPE 175

Query: 178 IDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
               V     T    +         A+      I  K    +      F EG+  +QD S
Sbjct: 176 QTARVNVMRATVEEVIDRLKEEGIEAIPSSVVPIGTKITKGNAAKTSVFREGLITIQDES 235

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +            VLD CAAPGGKT      + +  +V ALD+   +++ +     RL
Sbjct: 236 SMLVAYALSPNETDVVLDCCAAPGGKTTHIAERMNNRGRVVALDIHDHKVKLIEQQAKRL 295

Query: 287 HLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L   +  ++D+         + FD +LVDAPCS  G IRR P++ + ++  DI + A  
Sbjct: 296 GLSNIEAKQLDSRQAHTQFAAETFDRILVDAPCSGLGVIRRKPEIKYAKNEKDITQLANV 355

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      +K GG +V+S C++D++++E+V+ + L   P       L S    S+  
Sbjct: 356 QLNILRAVAPLLKRGGTLVYSTCTVDREENEQVIAQFLAEHPEYDRDETLASRLPSSV-- 413

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +    G +++ P  +          DGFF   L++  +
Sbjct: 414 -ASYVDRGMLQLLPHHVYS--------DGFFIATLKKKGE 444


>gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911]
 gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911]
          Length = 448

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 214/465 (46%), Gaps = 39/465 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  N R  +  LL  + + +     LL+     +    +S +D  L+  +V  TL+  
Sbjct: 1   MANK-NVREAAVELLEAIEKNQSYSNLLLNSSIKKN---DISSKDVGLLTELVYGTLQRK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  ++  L +   + +  ++QLLR++  Q++YLD + D A +  AVE AKR K ++ 
Sbjct: 57  MTLDYQMEPFLKNP-KKLESWVRQLLRITFYQMIYLDKIPDRAAIYEAVEIAKR-KGHKG 114

Query: 120 FAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            + +VN +LR       R      + ++R+A  +  P W  +R  +  G ER   + +  
Sbjct: 115 ISGMVNGVLRSLQRQGARSLDSIKDSVERLAMETSHPLWLVKRWVDQLGFERAKEMCELN 174

Query: 173 ISPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWW 224
           ++          +K  ++     L           +          ++     F EG   
Sbjct: 175 LTAPMQTGRVNLMKVSMDECMAMLEEEGYLVEASPVIPEAVKSKKGNLAHSRAFKEGYLS 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           +QD S+ +     G   +  VLD CAAPGGKT  +     +  +V +LD+ + +++ +  
Sbjct: 235 IQDESSMLAAYALGAEKDNHVLDACAAPGGKTTHIAEKLGNTGQVISLDLHEHKVKLIAD 294

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           N  RL L   +   MD+           FD +L+DAPCS  G +RR PD+ +T+  +DI+
Sbjct: 295 NARRLGLSNIETKAMDSRTVQEHFNAGSFDRILLDAPCSGLGVMRRKPDMKYTKKEEDIM 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q KLL      +K GG +V+S C++D++++E  V++ L S P   E    +S   
Sbjct: 355 HLQKVQLKLLEAVAPLLKDGGTLVYSTCTVDREENENAVRQFLDSHP---EFSGDHSLAE 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +  D   AL+ +  ++I P  L        G DGF+  +LR+ +Q
Sbjct: 412 RLPDAVKALAKDFELQILPQDL--------GSDGFYIASLRKKVQ 448


>gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           parvula ATCC 17745]
 gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           3_1_44]
 gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           parvula ATCC 17745]
 gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           3_1_44]
          Length = 451

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 101/461 (21%), Positives = 182/461 (39%), Gaps = 46/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N RL++   LS + R        L           LS  D+     +V   +R    +DA
Sbjct: 11  NIRLLAVKALSEINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++       L +    + ++LR+ + QI+Y+D V + A V+ +V+ AK+    R  +  V
Sbjct: 68  IIVHFAKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 125

Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR V RE   +            I+ I   P W         GK++ + +       
Sbjct: 126 NAVLRSVLRESDSISIGELAKSEAEEISFIYNQPLWLVNLWIKEMGKDKTVDLCSWFNEQ 185

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225
             +   +      IE    +L  +               +      +       EG    
Sbjct: 186 PRLTARINTVKVSIEDCLKELEDLDWIVEQDTYIPEVVYIDGHQGHLEKAKPVLEGHITF 245

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
            D ++ +   +        +LD CAAPGGK+  +   + +   + + D+   +LE +  N
Sbjct: 246 MDKASMLVAHVVDPQPGELILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLELINQN 305

Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            +RL +        D        K+ FD VLVDAPCS  G +++  D+ W +    +++ 
Sbjct: 306 AERLGVSIISTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIEL 365

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L +    VK  G +V+S C+++  ++E V+ K L      +    ++   +K 
Sbjct: 366 PPLQLEILEKASEMVKVNGYLVYSTCTMNSGENEAVLNKFLAIHKNFI----IDPVSYKG 421

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              A+    +G I   P            MDGFF   ++RL
Sbjct: 422 APQAI----DGMITTYP--------PRDHMDGFFMARMKRL 450


>gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
 gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
          Length = 465

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 120/465 (25%), Positives = 198/465 (42%), Gaps = 47/465 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+ ++ R ++   L  V  +       +D          LS  D+ L+  +V  ++R  
Sbjct: 20  MKT-LSTRQIAFTALREV-HRGAYADIAIDRTLQKFK---LSDHDRRLMTELVYGSVRRQ 74

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             +DA++D +      ++   L+ +L + + Q+ Y   +   A V+  V+ AK +     
Sbjct: 75  RSLDAIIDQIADKKSQQQPRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKEN-GFPG 133

Query: 120 FAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAIS 169
               VN  LR+  R   +    +            +   P W  E   +  G+E    + 
Sbjct: 134 LTGFVNGFLRQYIRLLEKTSDPLILPENLVERLGILYSFPNWVIEVWLSQLGQEETEKLC 193

Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219
                   IDL V     +              ++ +     G+RL      I +LPGF 
Sbjct: 194 QWMNQTPTIDLRVNILRASLEMVESVFKKAGILVDRIPHLPQGLRLVNPAGPIQNLPGFT 253

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276
           EG W +QDA+A +   L        ++D+CAAPGGKT  +   +    K+ A D +  RL
Sbjct: 254 EGWWCIQDAAAQLVGHLLDPKPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRL 313

Query: 277 EKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            KL  N  RL L + +I   D         + D VL+DAPCS  GT+ RH D  W +D  
Sbjct: 314 RKLSENAQRLRLQSIEIFPGDSRNFTQFHHVADRVLLDAPCSGLGTMHRHADARWRQDPS 373

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            +   A  Q++L+     FVKPGG++V++ C+L  Q++E+++++ L  +P      P   
Sbjct: 374 SVGDLAHIQKELISHTAKFVKPGGVLVYATCTLHPQENEDLIREFLHINPQWEMEKPNFD 433

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      +S  GW+++ P            MDGFF V LR+
Sbjct: 434 FL--------DVSSPGWLKLWPHQQL--------MDGFFLVRLRK 462


>gi|322615051|gb|EFY11975.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617338|gb|EFY14239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625560|gb|EFY22385.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626402|gb|EFY23211.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632086|gb|EFY28839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635035|gb|EFY31758.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643264|gb|EFY39831.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646652|gb|EFY43159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649998|gb|EFY46417.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652715|gb|EFY49055.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659528|gb|EFY55772.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665530|gb|EFY61717.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670424|gb|EFY66563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670497|gb|EFY66631.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675073|gb|EFY71156.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681610|gb|EFY77639.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685954|gb|EFY81943.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195824|gb|EFZ80997.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196420|gb|EFZ81571.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202705|gb|EFZ87744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207310|gb|EFZ92260.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211254|gb|EFZ96099.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216037|gb|EGA00768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223472|gb|EGA07800.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226798|gb|EGA10988.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231840|gb|EGA15950.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233207|gb|EGA17302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237274|gb|EGA21339.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245509|gb|EGA29508.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249015|gb|EGA32937.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250638|gb|EGA34519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256867|gb|EGA40581.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263016|gb|EGA46563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266016|gb|EGA49511.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272773|gb|EGA56176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 429

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 210/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIDANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     + S A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVASEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDATLSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|212632964|ref|YP_002309489.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
           WP3]
 gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 428

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 125/449 (27%), Positives = 199/449 (44%), Gaps = 37/449 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ ++  V+ K ISL+  L  +         S +D+ L+  +    +R LP++D
Sbjct: 3   MNLRALAAKVVFQVLEKGISLSVALPDQQKHLD----SGKDKALLAELCYGVMRHLPQLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   +   L  K+  + QLL +   QI +  +  +A +    E A R  +     K+V
Sbjct: 59  KQVSDCMSKPLKGKQRIVHQLLLIGCYQIYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 117

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R++  L      +    P W  +RL+  Y +     I  +   P     +  
Sbjct: 118 NGVLRTIQRQEKPLSTDNDTLAYNTPAWIIKRLKEAYPENWQQVIEQSHQRPPMWLRNNQ 177

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                ET+   L      A    +    L   P  ++ LPGF  G   VQD +A     L
Sbjct: 178 QSQSRETYLQALAGLDIEAEAGNSPDSILLSSPRDVMQLPGFETGAASVQDGAAQWAATL 237

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                +  VLD CAAPGGKT     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 238 LAPQGDELVLDACAAPGGKTCHLLELAPDIKLVAVDFDAKRLERVQQNLDRLSLEAELIH 297

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               D   +     FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q K+     
Sbjct: 298 GDAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAALQSKIFDHCW 357

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + V   L  +     L+P+                   
Sbjct: 358 KWLKPGGTLLYATCSILPQENRDQVSAFLART-ADATLMPIEE----------------- 399

Query: 413 IRITPDML-EKIDGVSSGMDGFFAVALRR 440
            +  P     +I      MDGF+   L +
Sbjct: 400 -QTNPQDTGWQIVPGQDNMDGFYYARLVK 427


>gi|114706034|ref|ZP_01438937.1| hypothetical protein FP2506_16249 [Fulvimarina pelagi HTCC2506]
 gi|114538880|gb|EAU42001.1| hypothetical protein FP2506_16249 [Fulvimarina pelagi HTCC2506]
          Length = 473

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 193/441 (43%), Positives = 254/441 (57%), Gaps = 9/441 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR V++ LL  V+ ++ SL  L D ++G   FR L  RDQ LV+AI+   LRF  
Sbjct: 40  KPGLKARQVAAKLLGAVIEQQTSLDGLTDPDHGHPHFRQLEARDQGLVKAILLTALRFRG 99

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +   +   L   LP    +L  LL V+ AQI +LDV D A VDLAV  A+ D   R F 
Sbjct: 100 TLTQEIAARLDRPLPSNATALNHLLHVAAAQIRFLDVPDSAAVDLAVTAAEADPRTRRFK 159

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN++LRR++RE              P W  ERL   YG+ R  AI+ A   P  IDLT
Sbjct: 160 GVVNAVLRRMTRELGGAEVTTEPAIDCPNWLLERLIAAYGEPRAKAIAAAHRMPAPIDLT 219

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           VK D E WA +L   ++    IRL      SI SL GFAEG WWVQDASA++PV+LFG L
Sbjct: 220 VKTDPEAWAERLGGQVVSGPSIRLDATTQGSIASLDGFAEGKWWVQDASAALPVRLFGDL 279

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
              +  DLCAAPGGKTAQL++S A VTA + SK R ++L  NL RL  +  + +     +
Sbjct: 280 TGKTAADLCAAPGGKTAQLVLSDATVTACEASKSRAKRLVANLTRL-AHDAETLIGPFQE 338

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FDAVL+DAPCSSTGT+RRHPDV  T+  DD+ + A  QRKLL    + V PGG 
Sbjct: 339 TLGDRTFDAVLLDAPCSSTGTLRRHPDVGHTKSLDDVRRLAEVQRKLLDAAANHVAPGGT 398

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VFSNCS+D  + EE+V+  L          P+        D A  ++ +G +R TP+ML
Sbjct: 399 LVFSNCSIDPIEGEELVKAFLAERKDFTRR-PIEPTELPGFDKA--VTSDGDLRTTPEML 455

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
             I     G+DGF+A  L+R+
Sbjct: 456 SAI----GGIDGFYASRLQRV 472


>gi|83309246|ref|YP_419510.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum
           AMB-1]
 gi|82944087|dbj|BAE48951.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum
           AMB-1]
          Length = 431

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 169/444 (38%), Positives = 250/444 (56%), Gaps = 17/444 (3%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  S  + R ++  LLS V+ K   L  +LD    DS    L  RD+  VR ++  TLR
Sbjct: 1   MKRASSTSPRAIAVDLLSMVLDKGRLLDDVLD----DSRLSRLEDRDRGFVRMLLGTTLR 56

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            L +ID +++  L   +       +  LR+ + Q+L+LDVA +A +   V+  K  K   
Sbjct: 57  RLGQIDTLIEHCLDKPMRAGAAGAEHALRLGICQLLFLDVAPHAAISTTVDLVKGSKL-A 115

Query: 119 HFAKLVNSILRRVSRE-KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            FAKL+N++LRR+ RE +     + AG+   PEW        YG++   AI+ A +    
Sbjct: 116 GFAKLLNAVLRRLDREGRDLAAAQDAGLLNTPEWLWRSWVKAYGEDGAHAIAAAHLIEAP 175

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           +D+TV  D   WA +L A +LPTG +R +    S+ +LPGF +G WW+QDA+A++P +L 
Sbjct: 176 VDITVAADSALWAERLEASVLPTGSLR-RAAGGSVAALPGFDDGAWWIQDAAAALPARLL 234

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           G +   +V DLCAAPGGK  QL V+GA +TALD S +RL +   NL RL L A  ++E D
Sbjct: 235 GDVRGKAVADLCAAPGGKALQLAVAGADLTALDRSAKRLVRFTANLKRLGLKA-KVVEAD 293

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A  + P   FDA+L+DAPCS+TGT+RRHPDV   ++  +++K A  Q +LL   I  +KP
Sbjct: 294 AGAWTPPAPFDAILLDAPCSATGTLRRHPDVARHKNPAEVMKLAGVQARLLQAAIPMLKP 353

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+  CSL+ ++  E +  +L     P+  VP+         +A  ++PEG +R  P
Sbjct: 354 GGTLVYCTCSLEAEEGPEQIAALLA-GGAPLRRVPIRPEEVGG--LAELITPEGDLRTLP 410

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
             L        GMD FFA  L ++
Sbjct: 411 CHLAS----QGGMDAFFAARLEKV 430


>gi|23016809|ref|ZP_00056561.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 432

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 165/437 (37%), Positives = 254/437 (58%), Gaps = 15/437 (3%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++  LLS V+ K   L  +LD    DS    L +RD+  VR ++  TLR L +IDA
Sbjct: 9   NPRAIAVDLLSMVLDKARLLDDVLD----DSRLSKLEERDRGFVRMLLGTTLRRLGQIDA 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +++  +   +       +  LR+ + Q+L+LDVA +A +   V+  K  K    FAKL+N
Sbjct: 65  LIEHCVEKPMRAGAAGAEHALRLGICQLLFLDVAPHAAISTTVDLVKGSKL-AGFAKLLN 123

Query: 126 SILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           ++LRR+ RE  E + ++ AG+   PEW        YG++   AI+ A +    +D+TV  
Sbjct: 124 AVLRRLDREGRELVTEQDAGLLNTPEWLWRSWVRAYGEDGARAIAQAHLIEAPVDITVAA 183

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D   WA +L A +L TG +R +    SI +LPGF E  WW+QDA+A++P +L G +   +
Sbjct: 184 DPALWAERLEASILATGSLR-RAGGGSIAALPGFNEAAWWIQDAAAALPARLLGDVRGKA 242

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           V DLCAAPGGK  QL V+GA++TALD S +RL +   NL RL L A  ++E DA  + P 
Sbjct: 243 VADLCAAPGGKALQLAVAGAELTALDRSAKRLVRFTDNLKRLGLKA-KVVEADAGAWSPP 301

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             FDA+L+DAPCS+TGT+RRHPDV   ++  +++K A  Q +LL   +  +KPGG +V+ 
Sbjct: 302 APFDAILLDAPCSATGTLRRHPDVARHKNPAEVMKLAGVQARLLRAALPMLKPGGTLVYC 361

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CSL+ ++  E +  +L     P++ VP+ +   +   +A  ++ +G +R  P  L ++ 
Sbjct: 362 TCSLEPEEGPEQIAALLAE-GAPLKRVPIRAE--EVGGLAQLITADGDLRTLPCHLAEL- 417

Query: 425 GVSSGMDGFFAVALRRL 441
               GMD FFA  L ++
Sbjct: 418 ---GGMDAFFAARLEKM 431


>gi|161616434|ref|YP_001590399.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|197262016|ref|ZP_03162090.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|224493265|sp|A9N8B3|RSMB_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|161365798|gb|ABX69566.1| hypothetical protein SPAB_04249 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197240271|gb|EDY22891.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 429

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVVAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|319407809|emb|CBI81460.1| SUN-family protein [Bartonella sp. 1-1C]
          Length = 456

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 196/444 (44%), Positives = 263/444 (59%), Gaps = 9/444 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V   LL  V+ KR SL  L D EYG   +  LS RD++L RAI+   LR   +
Sbjct: 16  PGLAVRQVCVRLLGAVLDKRTSLAGLTDNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQ 75

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I   L   L+  LP + +SL  LL +S+ QILYLD+ D+A +DLAV  AK D   R F+ 
Sbjct: 76  ITVALSRFLVRPLPAQAFSLHHLLHISITQILYLDIPDHAAIDLAVRVAKIDPRMRRFSG 135

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN+ILR  +RE   L  +   I  IP WF + L + YG E+   I         +DLTV
Sbjct: 136 LVNAILRNFAREAPILRMQTPTIKAIPMWFGQLLVSTYGAEKADQILAIQSITPPLDLTV 195

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  ++LP G +RL     SI  LPG+AEG WWVQD +A++P +L G +  
Sbjct: 196 KSDSAGWAKRLGGIVLPNGSVRLISSAYSIADLPGYAEGAWWVQDVAAALPARLLGNVYG 255

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V DLCA+PGGKTAQL + GA V ALD+S  RL++LR N+DRL+         D  ++ 
Sbjct: 256 KKVADLCASPGGKTAQLALQGADVMALDISANRLKRLRENMDRLNFS-VHYWLGDLREFH 314

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P +LFDAVL+D PCSSTGTIRRHPD+LWT+  DD+ K A  Q  LLL  I+ VK  G VV
Sbjct: 315 PDQLFDAVLLDTPCSSTGTIRRHPDILWTKTMDDVTKLAEVQYGLLLAAIALVKKNGRVV 374

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           FSNCSL +++ E++V+K+L +    + L P+ +   +   MA  +S EG++R  P     
Sbjct: 375 FSNCSLAREEGEDLVKKILATR-DDIVLEPILAE--EMGAMAHLISMEGFLRTIPSDCCY 431

Query: 423 IDGVSS-----GMDGFFAVALRRL 441
            +  +      GMDGFFA   R++
Sbjct: 432 ENFNAEEKLFLGMDGFFAARFRKV 455


>gi|319406332|emb|CBI79969.1| SUN-family protein [Bartonella sp. AR 15-3]
          Length = 455

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 193/444 (43%), Positives = 266/444 (59%), Gaps = 9/444 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V   LL  V+ KR SL  L D EYG   +  LS RD++L RAI+   LR   +
Sbjct: 15  PGLIVRQVCVRLLGAVLDKRTSLAGLTDNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQ 74

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I   L   L+  LP + +SL  LL +S+ QILYLD+ D+A +DLAV  AK D   R F+ 
Sbjct: 75  ITVALSHFLVQPLPAQAFSLHHLLHISITQILYLDIPDHAAIDLAVRVAKIDSRLRRFSG 134

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN+ILR  +RE   L  +   I  IP WF++ L + YG E+   I         +DLTV
Sbjct: 135 LVNAILRNCAREAAILRVQTPTIEAIPTWFRQLLVSTYGVEKADQILAIQSIIPPLDLTV 194

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  ++LP G +RL     S+  LPG+AEG WWVQD +A++P++L G +++
Sbjct: 195 KSDSAGWAKRLGGIVLPNGSVRLVSSAYSVADLPGYAEGAWWVQDVAAALPIRLLGNIHD 254

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V DLCA+PGGKTAQL + GA VTA+D+S  RL++LR N++RL+         D   + 
Sbjct: 255 KKVADLCASPGGKTAQLALQGADVTAIDISANRLKRLRENINRLNFS-VHYWHGDLRQFH 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P +LFDAVL+D PCSSTGTIRRHPD+LWT+  +D+ K A  Q  LLL  I+ VK  G +V
Sbjct: 314 PDQLFDAVLLDTPCSSTGTIRRHPDILWTKTMEDVTKLAEMQYDLLLAAIALVKKNGRIV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           FSNCSL K++ E++V+K+L +    + L P+ +   +   MA  +S EG +R  P     
Sbjct: 374 FSNCSLAKEEGEDLVKKILSTRH-DIVLEPILAE--EMGAMAHLVSMEGCLRTIPSDCCD 430

Query: 423 IDGVSS-----GMDGFFAVALRRL 441
            +  +      GMDGFFA   R++
Sbjct: 431 GNFNTEEKLFLGMDGFFAARFRKV 454


>gi|290512100|ref|ZP_06551468.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
           1_1_55]
 gi|289775890|gb|EFD83890.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
           1_1_55]
          Length = 431

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+ +N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKNKINLRSLAAQAIEQVVEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++              + P+W  +RL+  + ++    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEALLVEFAEHENRYLHPKWLLKRLQQAWPQQWQEIVDANNQRPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    L                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   ++     N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + +   L  +P   EL    +         
Sbjct: 354 AEILNATWEHLKPGGTLVYATCSILPEENSQQISAFLARTP-DAELHATGTPASPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------QQNLPGPEEGDGFFYAKLIK 428


>gi|288933298|ref|YP_003437357.1| sun protein [Klebsiella variicola At-22]
 gi|288888027|gb|ADC56345.1| sun protein [Klebsiella variicola At-22]
          Length = 431

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+ +N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKNKINLRSLAAQAIEQVIEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++              + P+W  +RL+  + ++    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEALLVEFAEHENRYLHPKWLLKRLQQAWPQQWQEIVDANNQRPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    L                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   ++     N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + +   L  +P   EL    +         
Sbjct: 354 AEILNATWEHLKPGGTLVYATCSILPEENSQQISAFLARTP-DAELHATGTPASPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------QQNLPGPEEGDGFFYAKLIK 428


>gi|238913877|ref|ZP_04657714.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 429

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVVAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment']
          Length = 467

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 206/464 (44%), Gaps = 43/464 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR ++  +L+ V  ++   + LLD +   +    LSQ+D+ L   +    LR+  R+D
Sbjct: 16  MHARRLAFEILTQVEEQQAYASLLLDAKLKQAR---LSQQDRALATELTYGVLRWQGRLD 72

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR---HF 120
            +L  V      R   +L++LLR+   QIL+L  V  YA V+  V  A+    ++     
Sbjct: 73  YLLAAVTDRPWDRVDPALRRLLRLGAYQILFLTRVPAYAAVNETVALAQDVMRSQLKPVA 132

Query: 121 AKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDA 171
              VN+ILRR+      +             A     P W   R     G E   A+  A
Sbjct: 133 KAFVNAILRRLLERHATIRFPDPSGDPVGALAARWSHPSWLVARWLKRLGPEETEALLKA 192

Query: 172 CISPLYIDLTVK---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEG 221
                 + + V       E    +L  +          +G   L +  E++   P FA+G
Sbjct: 193 NNDTSALSVMVNLVKRQPEEVQERLTRIAGSVTPGRFVSGAFHLNDGAEALRD-PAFADG 251

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278
            ++  D +A++PV +        VLD C+  GGKT      +    +V ALD S R   +
Sbjct: 252 WYFPMDEAAALPVLMLNPQPGDVVLDACSGGGGKTALLLGRLGGQGRVIALDPSARAHRR 311

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           LR    RL L     ++ DA        +  D +LVDAPCS  GT+RRHP+  W +    
Sbjct: 312 LREARTRLSLDRVFPVQADARQAAQLFTRQVDRILVDAPCSGLGTLRRHPERRWQQQEAG 371

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +   A  Q +LL      ++PGG +V+S CSL+ ++++ VV+  LR  P   E V  +++
Sbjct: 372 LAALARLQLELLHGVAPVLRPGGFLVYSTCSLEPEETDVVVETFLRDFP---EFVAADTS 428

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +A  +  +G +R  P           G+DGF+A+ LRR
Sbjct: 429 GGLPATVAGLIDSKGALRTWPH--------RHGLDGFYAIRLRR 464


>gi|16766697|ref|NP_462312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167995183|ref|ZP_02576273.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|46396986|sp|Q8ZLM5|RSMB_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|16421964|gb|AAL22271.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205327090|gb|EDZ13854.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248565|emb|CBG26403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995617|gb|ACY90502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159951|emb|CBW19470.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914431|dbj|BAJ38405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226460|gb|EFX51510.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131766|gb|ADX19196.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990260|gb|AEF09243.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 429

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
 gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
          Length = 426

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 206/452 (45%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGHSLSNALP-----AAQQTIKPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  SIANELMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKTLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R +       +   AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDAMAVSHNAGKYGHPGWLLKLLQESYPQQWQEIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +        E       P  +  LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHSRDEYLELLKNENIDNTIHSEAEDAVKLAAPCDVTKLPGFEKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA       G++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLTPQDGELILDCCAAPGGKTAHILERTQGSEVVAIDCDDTRLKRVHDNLQRLNLKA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  D+   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 295 KVICGDARNPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q+++E V+  L  +                  +  +  
Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENKEQVKAFLARTSDA--------------KLQGSDV 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 401 DNPGRQILPG--------EEDMDGFYYAILTK 424


>gi|198244494|ref|YP_002217372.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|224493260|sp|B5FJI4|RSMB_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|197939010|gb|ACH76343.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326625153|gb|EGE31498.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 429

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 210/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLC+APGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCSAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DIV+ A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIVELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220]
 gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           youngae ATCC 29220]
          Length = 429

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 216/457 (47%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R +++  +  V+ K  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKHLNLRSMAAQAVEQVVEKGQSLSNVLPAM-----QQKVADKDKALLQELCFGALRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++  ++   +  K+ ++  L+ V   Q+L+  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWMIQQLMERPMTGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVVIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGK-ERVLAISDACISPL 176
             L+N +LR+  R + ELL   A      + P W  +R++  Y +    +  ++    P+
Sbjct: 115 KGLINGVLRQFQRRQEELLTEFAQSDLRFLHPSWLVKRIKAAYPQQWEAILEANNQRPPM 174

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDAS 229
           ++ +           +L A    TG              P  +++LPGF +G   VQDAS
Sbjct: 175 WLRVNRNHHTRDAWLELLAEAGLTGFPHPDYPDAVRLETPAPVLALPGFEQGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V      N   +LDLCAAPGGKT  ++    +  V A+DV ++RL ++  NL RL 
Sbjct: 235 AQGCVSYLQPQNGEQILDLCAAPGGKTTHILEVAPQANVMAVDVDEKRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS++G IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPQQWCGEQQFDRILLDAPCSASGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L    + +KPGG +V++ CS+  +++++ +   L  +P  V              ++
Sbjct: 354 AEILNATWTHLKPGGTLVYATCSILPEENQQQIAAFLARTPDAV--------------LS 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +PE           +    +   DGFF   L + 
Sbjct: 400 ETGTPE-------QPGRQNLPDAEDGDGFFYAKLIKK 429


>gi|217977604|ref|YP_002361751.1| sun protein [Methylocella silvestris BL2]
 gi|217502980|gb|ACK50389.1| sun protein [Methylocella silvestris BL2]
          Length = 448

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 166/439 (37%), Positives = 241/439 (54%), Gaps = 7/439 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ ARL ++ +L+ ++ K  SL          S  + L  RD  L R+IV   LR L  
Sbjct: 14  PGLPARLAAAAILNDIVGKAHSLEDCFSPGAIPSRLQGLDPRDVALTRSIVTAALRRLGT 73

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I   L   L   LPR    L+  L  + AQIL+LDV D+A VDLAV   + + ++  FA 
Sbjct: 74  IRKTLGEFLDKGLPRPVAHLEWTLIAAAAQILFLDVPDHAAVDLAVRATRLENKSAPFAG 133

Query: 123 LVNSILRRVSREKIELLQRIA-GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           ++N++LR ++R + ++L+         P W   R    YG++    I+ A      +DLT
Sbjct: 134 VINAVLRNIARGRDKILEDSDPFDHDTPPWLAARWRKTYGEDLARKIARANRDEPTLDLT 193

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D   WA +L  ++LPTG +RL      I  LPGFAEG WWVQDA+A++P +L     
Sbjct: 194 VKSDPALWAERLGGLVLPTGSVRLLTHA-PIAELPGFAEGEWWVQDAAAALPARLIAPAP 252

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V D CAAPGGK AQL  +GAKVTA+D S  RL++L  N  RL L+A+ ++       
Sbjct: 253 GARVADFCAAPGGKAAQLAAAGAKVTAIDRSAERLKRLAANFSRLDLHADVVVA--DIVG 310

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FDA+L+DAPC +TGTIRRHPD+ W +   DI   A  Q ++L + +  V+PGG++
Sbjct: 311 LKAQPFDAILIDAPCLATGTIRRHPDIAWIKKPTDIASLAQVQARMLDKAVELVRPGGVI 370

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL+ ++ E  +  +LR +P  +       +  +  D+   ++ EG +R  P  L 
Sbjct: 371 VYCTCSLEPEEGELQIAALLRRNPDMLR---SKISPHEVGDVEGVINNEGELRTLPCHLP 427

Query: 422 KIDGVSSGMDGFFAVALRR 440
             D   SG+DGFFA  L R
Sbjct: 428 ADDPRLSGLDGFFAARLIR 446


>gi|62181914|ref|YP_218331.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168264711|ref|ZP_02686684.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224585203|ref|YP_002639002.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|75480382|sp|Q57J62|RSMB_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766862|sp|C0PZV1|RSMB_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|62129547|gb|AAX67250.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|205346881|gb|EDZ33512.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224469731|gb|ACN47561.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|322716400|gb|EFZ07971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 429

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIDANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|206577662|ref|YP_002236309.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
           pneumoniae 342]
 gi|224493255|sp|B5XNC2|RSMB_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|206566720|gb|ACI08496.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
           pneumoniae 342]
          Length = 431

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+ +N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKNKINLRSLAAQAIEQVIEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++              + P+W  +RL+  + ++    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEALLVEFAEHENRYLHPKWLLKRLQQAWPQQWQEIVDANNQRPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    L                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   ++     N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + +   L  +P   EL    +         
Sbjct: 354 AEILNSTWEHLKPGGTLVYATCSILPEENSQQISAFLARTP-DAELHATGTPASPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------QQNLPGPEEGDGFFYAKLIK 428


>gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
           30120]
 gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 123/458 (26%), Positives = 207/458 (45%), Gaps = 45/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+    SL+ +L         R ++ +D+ L++ I    LR+L
Sbjct: 1   MKNKYNLRSIAATAISQVLDNGQSLSTVLPDL-----QRNINDKDKALLQEICFGVLRYL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--R 118
           P+++  +  ++   L  K+ +L  L+ V + Q+LY  +  +A +   V+ A   K    +
Sbjct: 56  PKLEWFISQLMEKPLTGKQRTLHYLIMVGIYQLLYTRIPAHAALAETVDGAVALKRPQLK 115

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                V     R   +  E         + P W  +R++  Y  E    I DA      +
Sbjct: 116 GLINGVLRSFLRQQVQLEERNTNNNSQYLHPSWLLKRIQTAYP-ETWQNIVDANNQRPPM 174

Query: 179 DLTV---KFDIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDAS 229
            L V       E +   L    +                  S+  LPGF +G   VQD S
Sbjct: 175 WLRVNSQHHTAEQYLALLEQADITAYLHPSHPSAIRLEEATSVTRLPGFEDGWSTVQDVS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A    +L   +N  ++LDLCAAPGGKT  ++     A V A+D+   RL++++ NL RL 
Sbjct: 235 AQGCAELLSPINGENILDLCAAPGGKTTHILELAPKAHVLAVDIDDARLKRVKENLQRLK 294

Query: 288 LYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            +A  I        ++   +LFD +L+DAPCS+TG IRRHPD+ W R   DI + +  Q 
Sbjct: 295 QHATVIQGDGTKPEEWAKDQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIQELSQLQA 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L    S++KPGG +V++ CS+  +++ + ++  L                   +D  +
Sbjct: 355 QILEAVWSYLKPGGTLVYATCSIMPEENSQQIKHFLSKH----------------VDARI 398

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
               E  ++I P         ++G DGFF   L +  Q
Sbjct: 399 NDGTELGLQILPS--------ATGGDGFFYARLLKQAQ 428


>gi|168239759|ref|ZP_02664817.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736151|ref|YP_002116352.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|224493267|sp|B4TXB2|RSMB_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194711653|gb|ACF90874.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197287575|gb|EDY26967.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 429

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 210/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIDANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT+    +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTSHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|311277757|ref|YP_003939988.1| sun protein [Enterobacter cloacae SCF1]
 gi|308746952|gb|ADO46704.1| sun protein [Enterobacter cloacae SCF1]
          Length = 429

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKHQNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDRALLQELSFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P++D ++  ++   +  K+ ++  L+ V + Q+L+  +  +A +   VE A   K  +  
Sbjct: 56  PQLDWLITQLMSRPMTGKQRTVHYLIMVGLYQLLHTRIPAHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P+W  +R+   Y ++    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEALLAEFATSDSRFLHPDWLVKRIRKAYPQQWQAVLEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    L                P S+ +LPGF  G   VQDAS
Sbjct: 175 WLRVNRTHHTRDAWLTLLETSGLKGYTHPRYPDAVRLETPTSVQALPGFDAGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   ++     N  ++LDLCAAPGGKT  ++    +  V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMRFLMPENGETILDLCAAPGGKTTHILEVAPEANVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C  + FD +L+DAPCS+TG IRRH D+ W R   DI + A  Q
Sbjct: 295 MKAE-VKQGDGRYPSQWCDGRQFDRILLDAPCSATGVIRRHSDIKWLRRDRDIAELALLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ E +   L+ +   V                
Sbjct: 354 AQILDAVWPHLKPGGTLVYATCSILPEENAEQIAAFLKRTGDAVL-------------SE 400

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +  ++  P         +   DGFF   L +
Sbjct: 401 TGTPEQPGLQNLP--------AADEGDGFFYAKLIK 428


>gi|168245235|ref|ZP_02670167.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168468035|ref|ZP_02701872.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194447684|ref|YP_002047433.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|200388990|ref|ZP_03215602.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|224493263|sp|B4TJX9|RSMB_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194405988|gb|ACF66207.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195628892|gb|EDX48302.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|199606088|gb|EDZ04633.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205336021|gb|EDZ22785.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 429

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 452

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/461 (22%), Positives = 188/461 (40%), Gaps = 46/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N RL++   LS + RK      +L           LS  D+     +V   +R    +D 
Sbjct: 12  NIRLLAVKALSDINRKGAYANIVLQDYILKY---NLSDLDRRFFTELVYGVVRRRNYLDV 68

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++       + +    + ++LR+ V QI+Y+D V + A V+ +V+ AK+    R  +  V
Sbjct: 69  IIVHFANRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 126

Query: 125 NSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N+ILR V RE+            ++ I+ I  IP W      + +G+++   +       
Sbjct: 127 NAILRSVIREQDSIGIEDLAANDIEAISFIYNIPLWLINLWISEFGRDKTEDLCAWFNEQ 186

Query: 176 LYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
             +   +             +      +         I +     S+     F +G    
Sbjct: 187 PKLTARINTILIDIPQCLTMLNEQGWAVTQDSNYEDIIYINSHRGSLEKSEAFIKGYITF 246

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
            D ++ +  +L        +LD CAAPGGK+  +   + +   + + D+ + ++E +  N
Sbjct: 247 MDKASMLVARLVNPQPGERILDCCAAPGGKSMYIAALMDNVGSLMSCDIHEHKIELMNSN 306

Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            DRL          DA          FD VLVDAPCS  G +++  D+ W +    + + 
Sbjct: 307 ADRLGASIVHTKVQDATKLPDSWNSYFDRVLVDAPCSGLGILQKKLDMRWRKQESILSEL 366

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L +    VK  G +++S C+L+ +++EEVV+  L+       ++P+   +   
Sbjct: 367 PSLQLAILERAAMTVKEKGYLIYSTCTLNYKENEEVVEAFLQKHK-EFSIIPVADDFPLK 425

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  S  G I   P         +  MDGFF V ++R+
Sbjct: 426 -------SNSGMITTYP--------PTDDMDGFFMVKMQRI 451


>gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rustigianii DSM 4541]
 gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rustigianii DSM 4541]
          Length = 428

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 117/457 (25%), Positives = 208/457 (45%), Gaps = 43/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +  V+ K  SL+ +L         R ++++D+ L++ +    LR+L
Sbjct: 1   MKNKYNLRSIAATAIGQVLDKGQSLSTVLPEL-----QRNINEKDKALLQEMCFGVLRYL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--R 118
           P+++  +  ++   L  K+  L  L+ V + Q+LY  +  +A +   V+ A   K    +
Sbjct: 56  PKLEWFISQLMEKPLTGKQRILHYLIMVGIYQLLYTRIPAHAALAETVDGAVALKRPQLK 115

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPLY 177
                V     R   +  E         + P W  +RL+  Y  +    +  +    P++
Sbjct: 116 GLINGVLRSFLRQQVQLEERNHNNNSQYLHPSWLLKRLQIAYPDQWQDIVDANNQRPPMW 175

Query: 178 IDLTVKFDI-ETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASA 230
           + +  + +  + +   L    +                  S+  LPGF EG   VQD SA
Sbjct: 176 LRVNPQHNTTDQYLTLLEQAGITAHLHPTHPNAVRLEDATSVNRLPGFDEGWSTVQDVSA 235

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHL 288
               +L   ++  S+LDLCAAPGGKT  ++     A V A+D+   RL++++ NL RL  
Sbjct: 236 QGCAELLSPVDGDSILDLCAAPGGKTTHILELAPKAHVLAVDIDDSRLKRVKENLQRLKQ 295

Query: 289 YAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A  I        ++   + FD +L+DAPCS+TG IRRHPD+ W R   DI + +  Q +
Sbjct: 296 QAIVIQGDGTKPEEWAHGQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELSQLQFQ 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L     ++KPGG +V++ CS+  +++   +Q+ L                   +D ++ 
Sbjct: 356 ILEAIWPYLKPGGTLVYATCSIIPEENSLQIQRFLTKH----------------VDASIT 399

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              E  ++I P         ++G DGFF   L +  Q
Sbjct: 400 DGTEFGLQILPS--------TTGGDGFFYARLLKQAQ 428


>gi|219669868|ref|YP_002460303.1| sun protein [Desulfitobacterium hafniense DCB-2]
 gi|219540128|gb|ACL21867.1| sun protein [Desulfitobacterium hafniense DCB-2]
          Length = 453

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 190/460 (41%), Gaps = 39/460 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++  +L  +  ++     ++     D +      R++ L   +VN TL+    +D  
Sbjct: 6   SRALAVQILRRIEEEKAYANLVMQKALHDLS----DPRERQLATLLVNGTLKHRLTLDYA 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L   L +  + ++ +LR+S  QILYL  +     ++  VE  K+ +    +  LVN
Sbjct: 62  LRRHLRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVELTKKQQG--KYTSLVN 119

Query: 126 SILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           S+LRRV     ++L            +     PEW  +R    YG     A+  A   P 
Sbjct: 120 SVLRRVLETGWDMLWPSKEKEPVRFLSLRYSHPEWMVKRWLKRYGMADTEALCQANNEPA 179

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227
            + +              +L    +            + E   S+  LP F EG + VQD
Sbjct: 180 PVWIRTNTLKISRADLQARLEGEGVKVTIGERVPESLVIEDFGSLDKLPSFQEGHFTVQD 239

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
            S+ +   +        VLD C APGGKT      + +  ++ A D+   +++ +     
Sbjct: 240 ESSQLIAHVLNPQAGQKVLDACGAPGGKTTHLAQRMENQGEILAFDIHPHKVKLIEDLAA 299

Query: 285 RLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL +        DA +           VLVDAPCS  G +RR  D+ W ++ D+I     
Sbjct: 300 RLGITIIRAQAGDARELAGVKDASCHKVLVDAPCSGLGVLRRRADMRWHKEEDEIKTLPA 359

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV-PLNSAYWKSI 401
            Q  +L +    V  GG +V+S C+++ +++ EVV+    + P  + +       Y  + 
Sbjct: 360 LQLAILERAAQCVAAGGELVYSTCTIEPEENFEVVKAFRANHPEFITVDFSGELPYSLAS 419

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +     + +G+++I P           GMDGFF    RR+
Sbjct: 420 EQDRKQAAKGFLQILPH--------KQGMDGFFLAKFRRV 451


>gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703]
 gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703]
          Length = 431

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 216/457 (47%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++ +++ V+    SL+  L     D     ++++D+ L++ +    LR L
Sbjct: 1   MKSKYNLRSIAAAVIAQVLDHGQSLSQSLPAVQRD-----IAEKDRALLQELCFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P++D  +  ++   L  K+  L  LL V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  PQLDWCIGQLMAKPLTGKQRVLHYLLMVGLYQLLYTRIPPHATLAETVEGATALKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +    +R   E ++ +Q+ + +   PEW   RL+  Y +     I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEELVQKMQKTSALHAHPEWLLTRLKKAYPETWQDIIDANNQHPPM 174

Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  + +  + +   L    +P       +       P  + SLPGF +G   VQDAS
Sbjct: 175 WLRVNRQHNERDGYIALLQEQGIPASKHPDYQDAIKLDTPSPVTSLPGFEQGWITVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          NN  +LDLCAAPGGKT     I   A+V A+DV + RL +++ NL RL 
Sbjct: 235 AQGCAYWLDPQNNEDILDLCAAPGGKTTHILEIAPKARVLAVDVDEHRLARVKENLQRLR 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +A D+ + D     ++C    FD +L+DAPCS+TG IRRHPD+ W R   DIV+ A  Q
Sbjct: 295 QHA-DVRQGDGRVPEEWCGDSQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIVELANLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R++L      +K GG +V++ CS+  +++++ +   L+     V     +          
Sbjct: 354 REILDAIWPRLKIGGTLVYATCSILPEENQQQIISFLQRHADAVLRETGSPEKP------ 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   ++  P   +         DGFF   L ++
Sbjct: 408 -------GVQKLPSPQDG--------DGFFYAKLIKI 429


>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
 gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
          Length = 453

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 200/460 (43%), Gaps = 42/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  +L  V + +     LL+          +  +D+ L+  +   TL+    +D 
Sbjct: 12  NVRDAALSILLAVDKNQAYSNLLLNETIKRHK---IEAKDRALLTELTYGTLQHKMTLDY 68

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
            L+  +  S+    + ++ LLR+S+ Q+ YL  +  +A V+ AVE AKR + +R  A  V
Sbjct: 69  YLEPFIRGSI---DHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKR-RGHRGIASTV 124

Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR V R+           ++R+A  +  P W  +R  + YG E    +      P  
Sbjct: 125 NGILRSVLRQGVPAITDIENPIERLAIETSHPIWLVQRFVDNYGLEVATGMLHENNVPPM 184

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V       E    +L A  L           L            F EG   +QD S
Sbjct: 185 QTVRVNTTKVTVEQAIAELEAEGLTAKQSEVIPECLHLTNGQPARTHAFKEGHITIQDES 244

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + IP  +      + VLD+CAAPGGKT     ++ +   + A D+   +L+ +  N +RL
Sbjct: 245 SMIPANVLNPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILATDLHPHKLDLIDHNTERL 304

Query: 287 HLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L   +   +D            +DAVLVDAPCS  G +RR PD+ +T+  +D+      
Sbjct: 305 GLDIIETAPIDGRKAPEFLQAESYDAVLVDAPCSGLGVMRRKPDIKYTKREEDLENLQTI 364

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  LL      +K  G +V+S C++DKQ++E  V+  L + P  +E + L S   K  + 
Sbjct: 365 QLALLDAATKVLKIEGKLVYSTCTVDKQENEGTVKAFLATHP-EMEAIQLESLPTKLAEK 423

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  G +++ P           G DGFF  A R+  +
Sbjct: 424 Q----ANGMLQVFPQDF--------GSDGFFVAAFRKKGE 451


>gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2]
 gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2]
          Length = 451

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 214/467 (45%), Gaps = 40/467 (8%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK     N R  +  LL  + + +     LL+     +    + Q+D  L+  +   TL+
Sbjct: 1   MKKLKKKNVRETALELLEAIEKNQSYSNLLLNNAIKKN---EIDQKDIGLLTELTYGTLQ 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
               +D  L   L  +  + +  + QLLR+++ Q+++LD + D A +  AVE AKR   +
Sbjct: 58  RRMTLDFYLQPFLAGN-KKIESWVNQLLRLTLYQMVFLDKIPDRAAIFEAVEIAKRW-GH 115

Query: 118 RHFAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           +  + +VN +LR V R       +  + ++R++  +  P W  +R  +  G E    + +
Sbjct: 116 KGISGMVNGVLRNVQRKGLPDLEQIEDSVERLSIETSHPAWLVKRWADQLGFEETKKMCE 175

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGV 222
             ++       V       E     L          +     +K L  ++ +   F +G+
Sbjct: 176 INLTAPLQTARVNEVKASREECLSLLKEEGFEVEPSQFIPVAIKCLRGNLANSRVFKDGL 235

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
             +QD S+ +     G   N  +LD CAAPGGKT      + +  +V +LD+ + +++ +
Sbjct: 236 ITIQDESSMLAAYALGGNPNEKILDACAAPGGKTTHIAEKMQNTGQVISLDLHEHKVKLI 295

Query: 280 RCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
             N DRL L       +D     ++  K+ FD +LVDAPCS  G +RR PD+ +T+  DD
Sbjct: 296 NDNADRLGLSNIKTNALDSRKVQEHYEKESFDRILVDAPCSGLGVMRRKPDMKYTKKEDD 355

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +      QR LL      +K GGI+V+S C++DK++++ VVQ  L+++      + +   
Sbjct: 356 LYHLHKIQRNLLDAVSPLLKKGGILVYSTCTVDKEENQHVVQSFLKNNAEFEGDISVRER 415

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             K+I           ++I P  +        G DGF+   LR+ +Q
Sbjct: 416 MPKAI---APFIDNFELQILPQDI--------GSDGFYIACLRKKVQ 451


>gi|226313315|ref|YP_002773209.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|226096263|dbj|BAH44705.1| probable ribosomal RNA small subunit methyltransferase
           [Brevibacillus brevis NBRC 100599]
          Length = 448

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 117/461 (25%), Positives = 199/461 (43%), Gaps = 39/461 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G  AR ++  +L+ V   +      L           LS  D  LV  +V  T++   
Sbjct: 3   KKG--ARDIALDVLNRVEEHKSYSNLELRNVLDR---ENLSAADAGLVTELVYGTIQRKM 57

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D VL   + +   + +  ++ LLR+S+ QI +LD + + A V  AVE AK+ + ++  
Sbjct: 58  TLDHVLSHFVGN--KKVQTWVRNLLRLSLYQIHFLDRIPERAAVHQAVEIAKK-RGHQGI 114

Query: 121 AKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDAC 172
           A +VN +LR V R+     ++         A     PEW   +  N YG+E  +AI +A 
Sbjct: 115 ASMVNGVLRNVLRQPDVWERQPKGSRALQIAVAYSHPEWLVRQWLNVYGEETTIAICEAN 174

Query: 173 ISPLY--IDLTVKFDIET------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
               +  I +      +           L           +      +     F EG + 
Sbjct: 175 NRTPHSAIRVNAWKTTKDQVLDKLAEEGLEGQASSVSPHAILMEGGHVAGSRLFKEGYFT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +          + VLD CAAPGGKT     ++ +  ++ A DV   + + +  
Sbjct: 235 IQDESSMLVAPALAAQPGMRVLDACAAPGGKTTHIAEMMENRGEIIASDVHPHKRDLIAN 294

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
              RL +     I  DA D   K    FD +L+DAPC+  G IRR PD+ W +  +D+  
Sbjct: 295 AAKRLGITIIQPIVSDALDLPEKALGTFDRILLDAPCTGFGVIRRKPDLKWNKTPEDVRA 354

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  Q +LL      +  GG++V+S C+++  +++E+V++ +   P  V    L     +
Sbjct: 355 IAQLQYELLKTLAPLLAEGGVMVYSTCTIEPAENQEIVRRFVEEHPDFVFDDTLAQDLPE 414

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++   +  +    ++I P   E         DGFF   L+R
Sbjct: 415 AVRGHVDETGA-CVQILPHHFES--------DGFFIARLKR 446


>gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           6_1_27]
 gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
           6_1_27]
          Length = 451

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 182/461 (39%), Gaps = 46/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N RL++   LS + R        L           LS  D+     +V   +R    +DA
Sbjct: 11  NIRLLAVKALSEINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++       L +    + ++LR+ + QI+Y+D V + A V+ +V+ AK+    R  +  V
Sbjct: 68  IIVHFAKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 125

Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR V RE   +            I+ I   P W         GK++ + +       
Sbjct: 126 NAVLRSVLRESDSISIGELAKSEAEEISFIYNQPLWLVNLWIKEMGKDKTVDLCSWFNEQ 185

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225
             +   +      IE    +L  +               +      +       EG    
Sbjct: 186 PRLTARINTVKVSIEDCLKELEDLDWIVEQDTYIPEVVYIDGHQGHLEKAKPVLEGHITF 245

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
            D ++ +   +        +LD CAAPGGK+  +   + +   + + D+   +LE +  N
Sbjct: 246 MDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLELINQN 305

Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            +RL +        D        K+ FD VLVDAPCS  G +++  D+ W +    ++K 
Sbjct: 306 AERLGVSIISTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIKL 365

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L +    VK  G +V+S C+++  ++E V+ K L      +    ++   +K 
Sbjct: 366 PLLQLEILEKASEMVKVNGYLVYSTCTMNSGENEAVLNKFLAIHKNFI----IDPVSYKG 421

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              A+    +G I   P            MDGFF   ++RL
Sbjct: 422 APQAI----DGMITTYP--------PRDHMDGFFMARMKRL 450


>gi|56415328|ref|YP_152403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364258|ref|YP_002143895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81360778|sp|Q5PIT6|RSMB_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493266|sp|B5BGV5|RSMB_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|56129585|gb|AAV79091.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197095735|emb|CAR61305.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
          Length = 429

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDTVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|39998462|ref|NP_954413.1| Sun protein [Geobacter sulfurreducens PCA]
 gi|39985409|gb|AAR36763.1| Sun protein [Geobacter sulfurreducens PCA]
 gi|298507406|gb|ADI86129.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 448

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 197/464 (42%), Gaps = 41/464 (8%)

Query: 1   MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M       R  +  +L  + R+R     L+D E    A   L   D+ L+  +V   LR 
Sbjct: 1   MNQSTADPRRSAFDILVRIERERTFAEPLIDRELSGGA---LKGPDRGLLTELVYGVLRR 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              +D ++D    +   + + S+  LLR+ + QI +LD +   A V+  V  A+   ++ 
Sbjct: 58  TATLDYLVDLFCATRAAKLERSVLILLRLGLYQIFFLDRIPVSAAVNETVTLARE--KSP 115

Query: 119 HFAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
             + LVN++LRR               +    +A     P W  E      G E   A++
Sbjct: 116 RASGLVNAVLRRSDRERSSIAWPDRVRDPAGYLALRHSHPRWIVEGWIAQLGFEEAEALA 175

Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAE 220
           +   +P  + L V       E +   L          R            ++ +LPGF E
Sbjct: 176 EVMAAPPPLTLRVNTLRTSREAYLELLREAGTEAEPTRHSPHGIRILSRTAVPALPGFGE 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G+  VQD S+ +   L    +   VLD CA+PGGK      ++    +V A DVS+++L 
Sbjct: 236 GLVIVQDESSQLASLLLEPRSGERVLDACASPGGKATHLAQIMADKGEVIAWDVSEKKLS 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            +  N  RL +        DA +       FD +LVDAPCS+ G +RR P+  W +  DD
Sbjct: 296 PIAENARRLGIGIIRPAMADARNPEQNAAPFDRILVDAPCSALGVLRRTPEGKWWKTPDD 355

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           + + A  Q ++L    S +KPGG +++S CS    ++E +++  L      +    L   
Sbjct: 356 VARLAQSQCRILAGAASLLKPGGTLLYSTCSTTTDENESIIEDFLSRRADFM----LEDL 411

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +    ++  ++  G  R  P           GMDGFFA  LRR
Sbjct: 412 NYLFPGLSECITDRGMFRSWPH--------RHGMDGFFAARLRR 447


>gi|332799419|ref|YP_004460918.1| sun protein [Tepidanaerobacter sp. Re1]
 gi|332697154|gb|AEE91611.1| sun protein [Tepidanaerobacter sp. Re1]
          Length = 448

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/460 (24%), Positives = 197/460 (42%), Gaps = 40/460 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++  +L  + ++      LL+          +S +D+ LV  +VN  ++ L RID 
Sbjct: 3   NPRELAICMLIKI-QEGSYGNLLLNQHLTS----DMSLKDRALVTELVNGVVQNLLRIDY 57

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++       L +    ++  +RV + Q  +LD V D+A V+ +V   K+ +  +  A   
Sbjct: 58  IISQFSKIDLSKISPFVKNAIRVGIYQTFFLDRVPDFAAVNESVSLVKKYEG-KRAANFT 116

Query: 125 NSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N+ILR             + I + + ++     P W  +R    + K     +  A    
Sbjct: 117 NAILRNVLRKRDKIVYPNKNINIEKYLSIYYSFPSWLIQRWIELFDKNFTEELCMALNER 176

Query: 176 LYIDLTVKF---DIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQ 226
               + V     D E    +L+A          T           I  L  F +G++  Q
Sbjct: 177 PKPCIRVNTLVADREELEKQLSAEGARVAPGLFTEETLYILDSPPIAQLESFNKGLFAPQ 236

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ I     G  +N  VLD+ AAPGGKTA +   + +  ++ A D+   R+  +  N 
Sbjct: 237 DESSIIASLAAGVKSNDKVLDVAAAPGGKTAHMAAIMQNKGEIIAWDIHPHRVRLIEQNC 296

Query: 284 DRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL       ++      D    + FD V++DAPCS  G IRR PD+ W++  +DI    
Sbjct: 297 RRLKATIVVPEVRNAKIPDKNMFRKFDKVIIDAPCSGLGVIRRKPDIKWSKKPEDITALK 356

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+++L     +VKPGG +++S CS++ +++E+ V + L  +   +        Y    
Sbjct: 357 SEQKEILEVCSKYVKPGGFLIYSTCSIEPEENEKNVDEFLAKNDSFI--YDDLRPYLPEK 414

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    G+I + P++         G DGFF   L+R+
Sbjct: 415 LHNSLKQSYGYITLYPNI--------HGTDGFFIARLKRI 446


>gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 447

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 206/463 (44%), Gaps = 39/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R ++   L  + + +     LL      +    LS +D+ L+  +V  TL+  
Sbjct: 1   MKK-TSVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQDRGLLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  + QLLR+S+ Q+ YL+ + D A +  AVE AK  + ++ 
Sbjct: 57  IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN +LR + RE +     I       A  +  PEW  +   + YG E    I    
Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIH 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P    L V       A  L+                  +K L  +I     F  G   
Sbjct: 175 LIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGEVS 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +      + +VLD CAAPGGK+A +   + +   VT+LD+ K +++ ++ 
Sbjct: 235 IQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMQNKGSVTSLDLHKHKVKLIKE 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             DRL L       MDA         + FD +LVDAPCS  G IRR PD+ +T+  DD  
Sbjct: 295 AADRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSA 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q  +L +    VK GG +V+S C++D+ +++EV+   ++  P      P  S   
Sbjct: 355 RLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDF---EPDLSLEK 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  +       +G ++I P           G DGFF  ++R+ 
Sbjct: 412 RLPEKVRPFVRDGRLQILPHYF--------GTDGFFICSMRKK 446


>gi|331082369|ref|ZP_08331495.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330400855|gb|EGG80456.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 454

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/466 (22%), Positives = 214/466 (45%), Gaps = 38/466 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M + +N R +   +L  + ++      ++        ++ L ++++  +  +   TL + 
Sbjct: 1   MVNKVNLRELVLGILLEINKEGQHSHLVIRSTLE--KYQYLEKQERAFLTRVCEGTLEYK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            R+D +LD      + + K  ++++LR SV Q+LY+D V D AV D AV+ A++ K   +
Sbjct: 59  LRLDYILDQYSSVPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARK-KGFYN 117

Query: 120 FAKLVNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
               VN +LR+           EK + ++ ++ +  +P+W  E+    YG E+   + +A
Sbjct: 118 LTGFVNGVLRKVARDYSSIHFPEKNQPIEYLSVLYSMPKWLVEKFLAEYGFEKTEKMLEA 177

Query: 172 CISPLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGV 222
            +      + ++  +      L+++                   +  + + +L  F  G 
Sbjct: 178 FLKEKPTTIRIRQHLVDKDAVLDSLKRQNVTVEPAPYAENAYYIKNYDYLPALEAFRMGN 237

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
             VQD S+ +  ++        V+DLCAAPGGKT  +        ++ A D+S+ + + +
Sbjct: 238 IQVQDVSSMLVGEVADPKEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLI 297

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           R N  R +     + E DA     +  +  D ++ D PCS  G I +  D+ +      I
Sbjct: 298 RENAIRQNFLNVVVSEKDATQLDSESFEKADILIADVPCSGLGVIGKKTDIKYNITQTGI 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    QRK+L Q  ++VKPGG +++S C+++++++ E V+  + + P  +E +      
Sbjct: 358 AELVNLQRKILEQASTYVKPGGTLIYSTCTINREENIENVRWFVENYPYELESID----D 413

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +   ++    + EG++++ P +           DGFF   L+R  +
Sbjct: 414 YLCEELRSDTTKEGYLQLLPGV--------HDCDGFFIARLKRKTE 451


>gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908]
 gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908]
          Length = 425

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 203/447 (45%), Gaps = 34/447 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ ++  V+ K ISL+  L  +         S +D+ L+  +    +R LP++D
Sbjct: 1   MNLRALAAKVVFQVLEKGISLSVALPEQQKHCE----SGKDKALLAELSYGVMRQLPQLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   +   L  K+  L QLL V   Q+ +  +  +A +    E A R  +     K++
Sbjct: 57  KLISDCMAKPLKGKQRILHQLLLVGCYQLYFTRIPSHAAISETAE-ACRQLKFDGLVKVI 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISP-LYIDLTV 182
           N++LR + R++  L      +    P W  + L+  Y       I ++   P +++   V
Sbjct: 116 NAVLRNIQRQEKPLPTDNDTLTYNTPAWIIKSLKQAYPDSWQTVIENSHQRPPMWLRNNV 175

Query: 183 KFDIET------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +              +++A    +    L E P+ ++ LPGF +G   VQD +A     L
Sbjct: 176 RSQTRDEYLALLAEAEISASAGQSSDAILLESPKDVMQLPGFEQGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDI 293
               +   +LD CAAPGGKT  +   +  ++ A+D    RLE+++ NLDRL L A     
Sbjct: 236 LAPADGELILDACAAPGGKTCHILERADTELVAVDFDANRLERVQQNLDRLSLNAKLVHG 295

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q K+L     
Sbjct: 296 DAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELAQLQSKILDHCWK 355

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           ++KPGG ++++ CS+  Q++ + +   L  +     +          I            
Sbjct: 356 WLKPGGTLLYATCSILPQENAQQISAFLERTHDATLIAISQQPNPDDIGW---------- 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           +ITP         +  MDGF+   L +
Sbjct: 406 QITPG--------TENMDGFYYARLVK 424


>gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
           CIP 102972]
 gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
           CIP 102972]
          Length = 426

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 206/454 (45%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ +L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAAQVLFQVVDKGQSLSMALP-----AAQQNIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++ S L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SIANALMDSPLKGKQRVFHHLILVGIYQLSFMRIPPHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179
           N++LR   R +     E +   AG    P W  + L+N Y +    +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQDALDTEAMSHNAGKYGHPSWLLKLLQNAYPQQWEAIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +     + + +   LN   + +              P  +  LPGFA+G   VQDA+A +
Sbjct: 175 VNHQHHERDAYQALLNHENIDSSVHSQAHDALKLAAPCDVTQLPGFAQGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA       G  V A+D    RL+++  NL RL+L A
Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +     FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  QR++L
Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +                  +  +  
Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENVLQVKDFLARTSNA--------------QLVGSEL 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +I P            MDGF+   L +  
Sbjct: 401 DNPGRQILPG--------EEDMDGFYYAVLTKQA 426


>gi|13473485|ref|NP_105052.1| hypothetical protein mlr4098 [Mesorhizobium loti MAFF303099]
 gi|14024234|dbj|BAB50838.1| mlr4098 [Mesorhizobium loti MAFF303099]
          Length = 462

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 194/424 (45%), Positives = 261/424 (61%), Gaps = 5/424 (1%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  R  L  L D E G   ++ L  RD+ LVRAI+   LRF   I  +L   L   LP 
Sbjct: 41  VIDARTPLDGLTDHENGHPQYKALDLRDRGLVRAILVTALRFRMTITGLLARRLEKPLPP 100

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L V+ AQIL+LD+ D A VDLAV  AK D   + F+ LVN +LR ++R K  
Sbjct: 101 NATALSHILHVAAAQILFLDIPDSAAVDLAVTHAKSDPRTQRFSGLVNGVLRTLARAKET 160

Query: 138 L-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196
                +A     P+WF +RL+  YG+++   I  A      +D +V+ D E WA KL  +
Sbjct: 161 ELPAALAATDEAPKWFSDRLKAAYGEDKAKQILAAHRYEAPVDFSVRADPELWAEKLGGI 220

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
           +LPTG +R++ L  ++  LPGFAEG WWVQDA+AS+P +LFG +  L V DLCAAPGGKT
Sbjct: 221 VLPTGTVRVENLAGAVTDLPGFAEGAWWVQDAAASLPARLFGDVGGLRVADLCAAPGGKT 280

Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316
           AQLI++GAKVTA+D SK RL +L  NLDRL L AE + + D   Y P +LFDAVL+DAPC
Sbjct: 281 AQLILAGAKVTAVDTSKNRLARLAQNLDRLGLSAEIV-QADLLKYEPAELFDAVLLDAPC 339

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           SSTGT+RRHPDV WT+   D+ K A  QR+LL + ++ V+PGG +VFSNCSLD  + EE+
Sbjct: 340 SSTGTVRRHPDVPWTKTAADVEKLADLQRRLLARAVTLVRPGGRIVFSNCSLDPLEGEEL 399

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
               L+ +P    +V       +   +   L+ +G +R TP  L+      SG+DGFFA 
Sbjct: 400 HLAFLKETP---VVVDDPLRQGEIAGIDPFLTAQGTLRTTPADLDLGAPERSGLDGFFAA 456

Query: 437 ALRR 440
            +RR
Sbjct: 457 RMRR 460


>gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
 gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
          Length = 447

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 206/463 (44%), Gaps = 39/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R ++   L  + + +     LL      +    LS +D+ L+  +V  TL+  
Sbjct: 1   MKK-TSVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQDRGLLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  + QLLR+S+ Q+ YL+ + D A +  AVE AK  + ++ 
Sbjct: 57  IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN +LR + RE +     I       A  +  PEW  +   + YG E    I    
Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIH 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P    L V       A  L+                  +K L  +I     F  G   
Sbjct: 175 LIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGEVS 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +      + +VLD CAAPGGK+A +   + +   VT+LD+ K +++ ++ 
Sbjct: 235 IQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             DRL L       MDA         + FD +LVDAPCS  G IRR PD+ +T+  DD  
Sbjct: 295 AADRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSA 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q  +L +    VK GG +V+S C++D+ +++EV+   ++  P      P  S   
Sbjct: 355 RLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDF---EPDLSLEK 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  +       +G ++I P           G DGFF  ++R+ 
Sbjct: 412 RLPEKVRPFVRDGRLQILPHYF--------GTDGFFICSMRKK 446


>gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B]
 gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B]
          Length = 427

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 34/447 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ + +SL+  L  +       L   +D+ L+  I    +R LP++D
Sbjct: 1   MNIRALAAKAIFDVLERGVSLSVALPTQ----QLWLRDGKDKALLAEICYGVMRSLPQLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   +   L  K+  + QLL V   Q+ +  V  +A +    E  +         K+V
Sbjct: 57  KLVSGYMQKPLKGKQRVVHQLLLVGAYQLYFTRVPAHAAISETAEGCRA-LGFESLVKVV 115

Query: 125 NSILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L +         P W   RL++ Y +     I  +   P     +  
Sbjct: 116 NGVLRNIQRQVPPLDESNDTLKYNFPAWIIRRLKDAYPETWENIIEASHQRPPMWLRNNR 175

Query: 182 VKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                + +   L+     AV  P       E    +  LP FA+G   VQD +A     L
Sbjct: 176 RHQSRDAYLQALSDAEVSAVAGPGEDAICLEFATDVARLPHFADGASSVQDGAAQWAASL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDI 293
               +   VLD CAAPGGK+  L+  +  ++ A+D  ++RLE++  NL+RL L A     
Sbjct: 236 LAPRDGELVLDACAAPGGKSCHLLELADIELVAVDFDQKRLERVSQNLERLKLDARVIHG 295

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +     FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q+++L     
Sbjct: 296 DAGDIGSWWQGGKFDRILLDAPCSATGVIRRHPDIKWLRQNNDIAELAKLQQQILDNCWQ 355

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           ++KPGG ++++ CS+  +++ E ++  L  +P        N A    I            
Sbjct: 356 WLKPGGTLLYATCSILPEENREQIKAFLERTPDATLETLPNQANNNDIGW---------- 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           +I P            MDGF+   L++
Sbjct: 406 QILPG--------QDDMDGFYYARLKK 424


>gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 450

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 108/465 (23%), Positives = 201/465 (43%), Gaps = 39/465 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +G+N R +   +L  +  +       +      S ++ L ++++  +  +   TL + 
Sbjct: 1   MTNGINTRELILQILLEIEEEGKHSHIAIRNAL--SKYQFLPRQERAFITRVCEGTLEYR 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID ++D     S+ + K  ++++LR +V QI ++D V D AV + AV+ A+R K    
Sbjct: 59  ILIDYIIDSYSKVSVDKMKPVIREILRSAVYQIRFMDSVPDSAVCNEAVKLAQR-KGFYS 117

Query: 120 FAKLVNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
               VN +LR ++RE             ++ ++    +PE    R    YG+E+   I  
Sbjct: 118 LKPFVNGVLRTIAREWKNLKLPSREENPVRYLSVRYSMPETLVNRWLEDYGEEKTEKILT 177

Query: 171 ACISPLYIDL----TVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEG 221
             ++   I +          E +   ++  +       L    E      I++L  F +G
Sbjct: 178 DFLTEKPITVRCRTHKYPQKEIYESLVDQGVEVKPAPYLPYAYEISNYNHILALDAFIQG 237

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278
              VQD S+ +  ++        V+D+CAAPGGK+      +     V A D+S+ +++ 
Sbjct: 238 KIQVQDVSSMLVAEIADPQKGDYVIDMCAAPGGKSLHVADKMGDYGTVDARDISQYKVDM 297

Query: 279 LRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N+ R          MD   FD   +   D VL D PCS  G I + P++ +      
Sbjct: 298 IEENIHRTDCINVQAHVMDATVFDVDSELKADVVLADVPCSGYGVIGKKPEIKYRVTAQK 357

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
             +    QR +L     +VKPGG++VFS C++ K+++EE +   + + P  +E +     
Sbjct: 358 QEEIVILQRTILDNAAEYVKPGGVLVFSTCTIAKEENEENMLWFMNNHPFKLESIDPYLP 417

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++    +  G++++ P +           DGFF    RR 
Sbjct: 418 E----ELHSETTALGYLQLLPGV--------HKTDGFFIAKFRRK 450


>gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 446

 Score =  271 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/465 (26%), Positives = 201/465 (43%), Gaps = 47/465 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M + ++ R ++   L  V  +       +D          LS  D+ L+  +V  ++R  
Sbjct: 1   MNT-LSTRQIAFTALREV-HRGAYADIAIDRTLHKFK---LSDHDRRLMTELVYGSVRRQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             +DA++D +     P++   L+ +L + + Q+ Y   +   A V+  V+ AK +     
Sbjct: 56  RSLDAIIDQIADKKSPQQPRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKEN-GFPG 114

Query: 120 FAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAIS 169
               VN  LR+  R   +    +            +   P W  E   +  G+E    + 
Sbjct: 115 LTGFVNGFLRQYIRLLEKTSDPLILPENLVERLGILYSFPNWVIEVWLSQLGQEETEKLC 174

Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219
                   IDL V     +              L+ +     G+RL      I +LPGF 
Sbjct: 175 QWMNQTPTIDLRVNILRASVEMVESVFKKSGILLHRIPHLPQGLRLVGPAGPIQNLPGFT 234

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276
           EG W +QDA+A +   L        ++D+CAAPGGKT  +   +    K+ A D +  RL
Sbjct: 235 EGWWCIQDAAAQLVGHLLDPRPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRL 294

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            KL  N  RL L + +I   D+ ++       D VL+DAPCS  GT+ RH D  W ++  
Sbjct: 295 RKLSENAQRLRLQSIEIFPGDSRNFTKFHHLADRVLLDAPCSGLGTMHRHADARWRQNLS 354

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            +   A  QR+L+    +FVKPGG++V++ C+L  Q++EE++++ L  +P      P   
Sbjct: 355 SVGDLAHIQRELISHTANFVKPGGVLVYATCTLHPQENEELIREFLHVNPQWEMEKPNLD 414

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      +S  GW+++ P            MDGFF V LR+
Sbjct: 415 FL--------DVSSPGWLKLWPH--------QQNMDGFFLVRLRK 443


>gi|197249972|ref|YP_002148329.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|224493258|sp|B5F7R5|RSMB_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|197213675|gb|ACH51072.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 429

 Score =  271 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 208/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      + PGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLNPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|319404848|emb|CBI78449.1| SUN-family protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 456

 Score =  271 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 194/445 (43%), Positives = 260/445 (58%), Gaps = 11/445 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V   LL  V+ KR SL  L D EYG   +  LS RD++L RAI+   LR   +
Sbjct: 16  PGLAVRQVCVRLLGAVLDKRTSLAGLTDNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQ 75

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I   L   L+  LP + +SL  LL +S+ QILYLD+ D+A +DLAV  AK D     F+ 
Sbjct: 76  ITVALSRFLVRPLPAQAFSLHHLLHISITQILYLDIPDHAAIDLAVRVAKIDPRMPRFSG 135

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN+ILR  +RE   L  +   I  IP WF + L + YG E+   I         +DLTV
Sbjct: 136 LVNAILRNFAREAPILRMQTPTIKAIPMWFGQLLVSTYGAEKADQILAIQSITPPLDLTV 195

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  ++LP G +RL     S+  LPG+AEG WWVQD +A++P +L G +  
Sbjct: 196 KSDSAGWAKRLGGIVLPNGSVRLISSAYSVADLPGYAEGAWWVQDVAAALPARLLGNVCG 255

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V DLCA+PGGKTAQL + GA VTALD+S  RL++LR N+DRL+         D   + 
Sbjct: 256 KKVADLCASPGGKTAQLALQGADVTALDISANRLKRLRENMDRLNFS-VHYWLGDLRQFH 314

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P +LFDAVL+D PCSSTGTIRRHPD+LWT+  DD+ K A  Q  LLL  I  VK  G +V
Sbjct: 315 PDQLFDAVLLDTPCSSTGTIRRHPDILWTKTMDDVTKLAEVQYDLLLAAIDLVKKNGCIV 374

Query: 363 FSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           FSNCSL +++ E++V+K+L       + L P+ +   +   MA  +S EG++R  P    
Sbjct: 375 FSNCSLAREEGEDLVKKILAIRH--DIVLEPILAE--EMGAMAHLISMEGFLRTIPSDCC 430

Query: 422 KIDGVSS-----GMDGFFAVALRRL 441
             +  +      GMDGFFA   R++
Sbjct: 431 YENFNTEEKLFLGMDGFFAARFRKV 455


>gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 429

 Score =  271 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 210/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V      N   +LDLCAAPGGKT  ++     A V A+DV ++RL ++  NL RL 
Sbjct: 235 AQKCVAFLAPQNGEHILDLCAAPGGKTTHILEAAPEADVLAVDVDEQRLSRIYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCDEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++   +   L+ +P                ++ 
Sbjct: 354 AEILDTVWPRLKPGGTLVYATCSVLPEENSAQINAFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            A   EG                   DGFF   L + 
Sbjct: 414 GA--EEG-------------------DGFFYAKLIKK 429


>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           fusiformis ZC1]
 gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           fusiformis ZC1]
          Length = 453

 Score =  271 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 200/460 (43%), Gaps = 42/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  +L  V + +     LL+          +  +D+ L+  I   TL++   +D 
Sbjct: 12  NVRDAALSILLAVDKNQAYSNLLLNETIKRHK---IEAKDRALLTEITYGTLQYKMTLDY 68

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
            L+  + SS+    + ++ LLR+S+ QI YL  +  +A V+ AVE AKR + +R  A +V
Sbjct: 69  YLEPFIRSSI---DHWVRWLLRISLYQIHYLTRIPPHAAVNEAVEIAKR-RGHRGIASMV 124

Query: 125 NSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR V R  +     IA         +  P W  +R  + YG E    +      P  
Sbjct: 125 NGILRSVLRSGVPSTDDIADPIERLSIETSHPMWLVQRFVDNYGLEVATEMLHENNRPPV 184

Query: 178 IDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V     T         A  L A+        L            F EG+  +QD S
Sbjct: 185 QTVRVNTTKATVKQAIAELEAEGLTAIQSDVIPECLYITNGQPARTKAFKEGMITIQDES 244

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + IP  +      + VLD+CAAPGGKT  +   + +   + A D+   +L+ +  N +RL
Sbjct: 245 SMIPANVLNPSPGMRVLDMCAAPGGKTTHIAEIMQNEGSILATDLHPHKLDLIDHNTERL 304

Query: 287 HLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L   +   +D            FDA+LVDAPCS  G +RR PD+ +T+  +D+      
Sbjct: 305 GLDIVETAPIDGRKAPEFLQAASFDAILVDAPCSGLGVMRRKPDIKYTKREEDLESLQKI 364

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  LL      +K  G +V+S C++D Q++E  V+  L + P  +E + L S   K  + 
Sbjct: 365 QLALLDAATKVLKTDGKLVYSTCTVDIQENEGTVKAFLTAHP-EMEAIQLESLPTKLAEK 423

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  G +++ P           G DGFF  A R+  +
Sbjct: 424 Q----ANGMLQVFPQDF--------GSDGFFVAAFRKKGE 451


>gi|291527116|emb|CBK92702.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           rectale M104/1]
          Length = 469

 Score =  271 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/453 (22%), Positives = 197/453 (43%), Gaps = 40/453 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            ++ R ++  +L  +  +      +L        ++ LS++D+  +  +V+ T+ ++ ++
Sbjct: 38  SVDTRELALEMLIEINERGAFSHIVLRSVL--DKYQYLSKQDRAFMTRLVDGTIEYMLQL 95

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D ++D    + + + K  ++ LLR+SV QI Y+D V D AV + AV+ AKR K  +  + 
Sbjct: 96  DYIIDSFSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQ-LSG 154

Query: 123 LVNSILRRVSREKIELLQRI-AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            VN +LR ++R    +     +    +P+W  +R    YG+++   I  A  S   I + 
Sbjct: 155 FVNGVLRNIARNIDSVQFDTLSIRYSMPQWIVDRFVAEYGEKKAEEIFKAFHSKSTISIR 214

Query: 182 VKFDI---ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                   +     L A  +            +    + +  L  F +G+++VQD S+ +
Sbjct: 215 TNLTRCTPDELRAMLEAEGVIVTPVDELNYAFVISGFDYLNGLQSFRDGLFYVQDISSML 274

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             Q         V+D+CAAPGGK+  +         V A D++  ++  +  N+DR  L 
Sbjct: 275 VAQTAAPKKGDYVIDVCAAPGGKSTHIAELLKGSGHVLARDLTDTKVGMIEENIDRHGLN 334

Query: 290 AEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                  DA        +  D ++ D PCS  G + R  D+ +    + + + A  QR++
Sbjct: 335 NMSAEVWDATVPDADSAEKADILICDLPCSGLGVLGRKKDIRYKMTPESVDELAALQRQI 394

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    ++VKP G++V+S C++D+ ++E+ V+  +   P     +                
Sbjct: 395 LDTVHTYVKPNGVLVYSTCTIDEAENEDNVRWFIEKHPEFELDMSFAEGT---------- 444

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              G  +I P           G DGFF     +
Sbjct: 445 ---GMKQILPG--------EHGSDGFFIARFIK 466


>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           sphaericus C3-41]
 gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           sphaericus C3-41]
          Length = 453

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 195/460 (42%), Gaps = 42/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  +L  V + +     LL+          +  +D+ L+  +   TL+    +D 
Sbjct: 12  NVRDAALSILLAVDKNQAYSNLLLNETIKRHK---IEAKDRALLTELTYGTLQHKMTLDY 68

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
            L+  +  S+    + ++ LLR+S+ Q+ YL  +  +A V+ AVE AKR + +R  A  V
Sbjct: 69  YLEPFIRGSI---DHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKR-RGHRGIASTV 124

Query: 125 NSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR           +    ++R+A  +  P W  +R  N YG E    +      P  
Sbjct: 125 NGILRSVLRQGVPSINDIENPIERLAIETSHPIWLVQRFVNNYGLEVATGMLHENNVPPI 184

Query: 178 IDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V     T            L A         L            F EG   +QD S
Sbjct: 185 QTVRVNTTKVTVEQAMAELEEEGLTAKQSDVIPECLHVTNGQPARTNAFKEGHITIQDES 244

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + IP  +      + VLD+CAAPGGKT     ++ +   + A D+   +L+ +  N +RL
Sbjct: 245 SMIPANVLKPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILATDLHPHKLDLIDHNTERL 304

Query: 287 HLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L   +   +D            +DA+LVDAPCS  G +RR PD+ +T+  +D+      
Sbjct: 305 GLDIIETAPIDGRKAPEFLQAESYDAILVDAPCSGLGVMRRKPDIKYTKREEDLENLQTI 364

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  LL      +K  G +V+S C++DKQ++E  V   L + P  +E + L S   K  + 
Sbjct: 365 QLALLDAATKVLKIKGKLVYSTCTVDKQENEGTVNAFLAAHP-EMEAIQLESLPTKLAEK 423

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  G +++ P           G DGFF  A R+  +
Sbjct: 424 Q----ANGMLQVFPQDF--------GSDGFFVAAFRKKGE 451


>gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894]
 gi|224493253|sp|A7MPE7|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894]
          Length = 429

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 210/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R +++  +  V+ K  SL+ +L           +S +D+ L++ +    LR L
Sbjct: 1   MKKSINLRSLAAQAIEQVVEKGQSLSTVLP-----PLQHKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  + F
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTIHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRMQ-F 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPL 176
             L+N +LR+  R++ E            + P W   R +  + +E   +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFSGQDARWLHPMWLLNRFQTAWPREWQAVVEANNERPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGF +G   VQDAS
Sbjct: 175 WLRVNRQHHSRDEWLKLLEENGMTGHIHPRYPDAVRLDAPAPVSALPGFEQGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V+L    N  ++LDLCAAPGGKT  ++     A V A+DV  +R+ ++  NL RL 
Sbjct: 235 AQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKRLK 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A D+   D      +C +  FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKA-DVKVGDGRFPSTWCGETQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG ++++ CS+  +++ E ++  L  +P                   
Sbjct: 354 SEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTPDAQLD-------------G 400

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    I+  P   E         DGFF   L + 
Sbjct: 401 TGSTQTPGIQNLPGATEG--------DGFFYAKLIKK 429


>gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885]
 gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885]
          Length = 511

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/443 (23%), Positives = 167/443 (37%), Gaps = 38/443 (8%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83
            +   L      +A   L  R++ L   +     R    +D  L         R    ++
Sbjct: 81  YVDHALARILDRAA---LPARERALATELAYGVARRQGTLDWALSRFSRKPPARLDPPVR 137

Query: 84  QLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-- 140
             LR+   Q+ YLD +  +A VD +V   +R     + A  VN++LR  +R      +  
Sbjct: 138 AALRLGAYQLWYLDRIPAHAAVDESVNLVRRH-GPAYAAGFVNAVLRAAARHGFPQGEVP 196

Query: 141 --------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET---- 188
                    +A +   P W  ER     G E    + +A      +   V          
Sbjct: 197 PRERDLAGHLALVHAHPRWLVERWLGRLGPEEAERLLEANNRVPPLSARVNRLRADPRAL 256

Query: 189 -----WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                                          L  F EG    QD S+ + V +       
Sbjct: 257 AAALAARGVAVEAGRFLPEALRLGHGVHPAELDAFQEGALTWQDESSMLAVHVLDPRPGD 316

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPGGK+      +    +V A D    RLEK+     RL L   + + +D   
Sbjct: 317 LVVDVAAAPGGKSTHIAERMGDRGRVVACDADPGRLEKVGEAARRLGLGCIEPLALDGRK 376

Query: 301 YCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
              +     D VL D PCS  G + R PD+ W +  DD+   A  Q +LL    + +KPG
Sbjct: 377 LPERLAGQADRVLADVPCSGLGVLARRPDLRWRKTPDDLAALAELQGELLRAAAACLKPG 436

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+S C+ + +++++VV+  L  +        L      ++      + +GWI++ P 
Sbjct: 437 GVLVYSTCTTEPEENQQVVEGFLAQAGGAFTADDLRPWLPAALRDEPG-TAQGWIQLWPH 495

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
                     G+DGFF   LRR+
Sbjct: 496 --------RHGVDGFFIARLRRV 510


>gi|291526150|emb|CBK91737.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           rectale DSM 17629]
          Length = 469

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 196/453 (43%), Gaps = 40/453 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            ++ R ++  +L  +  +      +L        ++ LS++D+  +  +V+ T+ ++ ++
Sbjct: 38  SVDTRELALEMLIEINERGAFSHIVLRSVL--DKYQYLSKQDRAFMTRLVDGTIEYMLQL 95

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D ++D    + + + K  ++ LLR+SV QI Y+D V D AV + AV+ AKR K  +  + 
Sbjct: 96  DYIIDSFSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQ-LSG 154

Query: 123 LVNSILRRVSREKIELLQRI-AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            VN +LR ++R    +     +    +P+W  +R    YG+++   I  A  +   I + 
Sbjct: 155 FVNGVLRNIARNIDSVQFDTLSIRYSMPQWIVDRFVAAYGEKKAEEIFKAFHNKSTISIR 214

Query: 182 VKFDI---ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                   +     L A  +            +    + +  L  F +G+++VQD S+ +
Sbjct: 215 TNLTRCTPDELRATLEAEGVTVTAVDELNYAFVISGFDYLNGLQSFRDGLFYVQDISSML 274

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             Q         V+D+CAAPGGK+  +         V A D++  +++ +  N+DR  L 
Sbjct: 275 VAQTAAPKKGDYVIDVCAAPGGKSTHIAELLRGSGHVFARDLTDNKVDMIEENIDRHGLN 334

Query: 290 AEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                  DA  +        D ++ D PCS  G + R  D+ +    + + +    QR++
Sbjct: 335 NMSAEVWDATVFDADSAGKADILICDLPCSGLGVLGRKKDIRYKMTPESVDELVVLQRQI 394

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    ++VKP G++V+S C++D+ ++E+ V+  +   P                      
Sbjct: 395 LDTVHTYVKPNGVLVYSTCTIDEAENEDNVRWFIEKHPEFELDKSFAEGT---------- 444

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              G  +I P           G DGFF     +
Sbjct: 445 ---GMKQILPG--------EHGSDGFFIARFIK 466


>gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 450

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 114/459 (24%), Positives = 197/459 (42%), Gaps = 41/459 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR ++  +L  + R        LD     S+   L   D  L   IV   +R    +DA
Sbjct: 3   NARQLALLILRDIDRSSAYPDRALDRHLSASSLNCL---DTALTTEIVYGIIRRQRTLDA 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +LD +   +  ++   L+++L + + Q+ YL  +   A V+ AVE  K     +  A +V
Sbjct: 60  LLDRLGKKTAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGK-LAAVV 118

Query: 125 NSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           N +LR+  R                 R+  +   P+W  +   + +       +      
Sbjct: 119 NGMLRQYLRLTANGDDPLLLPENTASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNR 178

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGG------IRLKELPESIVSLPGFAEGVWWV 225
              +D+ +       E   ++L +  +           RL     +I  L GF  G + +
Sbjct: 179 SPDLDIRINPLKTSREALENELESANITFHHLKLPLACRLTSGLGNIERLEGFRAGNYTL 238

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD SA +   L       +++D CAAPGGKT  +   +    ++ A D +  RL +L  N
Sbjct: 239 QDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEAN 298

Query: 283 LDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           + RL L A +I   D+ D      + D VL+DAPCS  GT+ + PD+ W +  +++   A
Sbjct: 299 IKRLDLKAIEIHLGDSRDRPQWHGIADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLA 358

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL    ++VKP GI+V++ C+LD  ++E V+++ L + P      P +++     
Sbjct: 359 KRQGELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMATPDSNSCV--- 415

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +   +  G I + P             DGFF   L +
Sbjct: 416 --SEYYTETGAIEVLPH--------RHNQDGFFMAKLVK 444


>gi|238924695|ref|YP_002938211.1| sun protein [Eubacterium rectale ATCC 33656]
 gi|238876370|gb|ACR76077.1| sun protein [Eubacterium rectale ATCC 33656]
          Length = 469

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 195/453 (43%), Gaps = 40/453 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            ++ R ++  +L  +  +      +L        ++ LS++D+  +  +V+ T+ ++ ++
Sbjct: 38  SVDTRELALEMLIEINERGAFSHIVLRSVL--DKYQYLSKQDRAFMTRLVDGTIEYMLQL 95

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D ++D    + + + K  ++ LLR+SV QI Y+D V D AV + AV+ AKR K  +  + 
Sbjct: 96  DYIIDSFSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQ-LSG 154

Query: 123 LVNSILRRVSREKIELLQRI-AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            VN +LR ++R    +     +    +P+W  +R    YG+++   I  A  +   I + 
Sbjct: 155 FVNGVLRNIARNIDSVQFDTLSIRYSMPQWIVDRFVAAYGEKKAEEIFKAFHNKSTISIR 214

Query: 182 VKFDI---ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                   +     L A  +            +    + +  L  F +G+++VQD S+ +
Sbjct: 215 TNLTRCTPDELRATLEAEGVTVTAVDELNYAFVISGFDYLNGLQSFRDGLFYVQDISSML 274

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             Q         V+D+CAAPGGK+  +         V A D++  +++ +  N+DR  L 
Sbjct: 275 VAQTAAPKKGDYVIDVCAAPGGKSTHIAELLQGSGHVFARDLTDNKVDMIEENIDRHGLN 334

Query: 290 AEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                  DA  +        D ++ D PCS  G + R  D+ +      + +    QR++
Sbjct: 335 NMSAEVWDATVFDADSAGKADILICDLPCSGLGVLGRKKDIRYKMTPGSVDELVVLQRQI 394

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    ++VKP G++V+S C++D+ ++E+ V+  +   P                      
Sbjct: 395 LDTVHTYVKPNGVLVYSTCTIDEAENEDNVRWFIEKHPEFELDKSFAEGT---------- 444

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              G  +I P           G DGFF     +
Sbjct: 445 ---GMKQILPG--------EHGSDGFFIARFIK 466


>gi|331088259|ref|ZP_08337178.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330408503|gb|EGG87969.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 456

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 106/468 (22%), Positives = 193/468 (41%), Gaps = 41/468 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R + + +L  V         +L      + ++ L +R++  +  +   TL  +
Sbjct: 1   MAKAINEREIVAAILMEVTENGRYSHIVLREVL--TKYQYLEKRERAFITRVTEGTLEHM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +LD      + + K  ++ +LR +V QI Y+D + D+AV   +V+ A + K    
Sbjct: 59  TEIDYILDCFSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVK-KGFSG 117

Query: 120 FAKLVNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
               VN +LR             + ++R++     PEW     +  Y    +  +     
Sbjct: 118 LRGYVNGVLRSVVKGIDEVEYPSDPIKRLSVRYSCPEWIIRLWKETYDLSLIETMLKDFQ 177

Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWW 224
           +     +         E    +L    +            L    + + SL  F EG++ 
Sbjct: 178 TEKPTTIRCCRSRITTEQLKKRLEEEHVLVENHPYLKDALLISKYDYLESLETFREGLFV 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGK---------TAQLIVSGAKVTALDVSKRR 275
           VQD S+ +  +L        V+DLCAAPGGK                   V A D+++ +
Sbjct: 238 VQDISSMLVGELAHVQAGAQVIDLCAAPGGKALDVAERILMEGQAGCSGHVEARDLTEYK 297

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  +  N++R+ L     +  DA  Y  K     D V+ D PCS  G + +  D+ +   
Sbjct: 298 VSLIEENIERMGLCNVTAVCQDASVYDEKSAGKADIVIADLPCSGLGVLGKKTDLKYKAS 357

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + IV     QRK+L    S+VKPGG +++S C+++ +++ E V   L+  P   E    
Sbjct: 358 PEGIVSLVKLQRKILSCAASYVKPGGELLYSTCTVNPKENIENVHWFLKEFP---EFYAD 414

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      +++  +++  G I++ P +           DGFF   LR+ 
Sbjct: 415 DIREDLCLELRESVTENGCIQLLPGV--------HKSDGFFIARLRKK 454


>gi|170769473|ref|ZP_02903926.1| ribosomal RNA small subunit methyltransferase B [Escherichia
           albertii TW07627]
 gi|170121530|gb|EDS90461.1| ribosomal RNA small subunit methyltransferase B [Escherichia
           albertii TW07627]
          Length = 429

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 211/457 (46%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMTRPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPL 176
             L+N +LR+  R++ E            + P W  +RL+  Y ++   +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPM 174

Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +    +  ++W   L    +               +P  + +LPGF EG   VQDAS
Sbjct: 175 WLRVNRTHNSRDSWLALLEKAGMKGFLHANYPDAVRLEIPAPVHALPGFDEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVMAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRSPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +K GG +V++ CS+  +++ + ++  L+ +   +                
Sbjct: 354 SEILDAIWPHLKSGGTLVYATCSILPEENSQQIKAFLQRTEDAMLCETGTPEQPG----- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                           ++    +   DGFF   L + 
Sbjct: 409 ----------------KQNLPDAEEGDGFFYAKLIKK 429


>gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
          Length = 426

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 206/454 (45%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ +L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAAQVLFQVVDKGQSLSMALP-----AAQQNIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++ S L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SIANALMDSPLKGKQRVFHHLILVGIYQLSFMRIPPHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179
           N++LR   R +     E +   AG    P W  + L+N Y +    +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQDALDAEAMSHNAGKYGHPSWLLKLLQNAYPQQWEAIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +     + + +   LN   + +              P  +  LPGFA+G   VQDA+A +
Sbjct: 175 VNHQHHERDAYQALLNHENIDSSVHSQARDALKLAAPCDVTQLPGFAQGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA       G  V A+D    RL+++  NL RL+L A
Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +     FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  QR++L
Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +                  +  +  
Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENVLQVKDFLARTSNA--------------QLVGSEL 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +I P            MDGF+   L +  
Sbjct: 401 DNPGRQILPG--------EEDMDGFYYAVLTKQA 426


>gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522]
          Length = 449

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 114/458 (24%), Positives = 208/458 (45%), Gaps = 36/458 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK G N R  +  +L  + +++     LL+     S    L+Q+D  L+  +V  T+++ 
Sbjct: 1   MKQG-NVRDTAVEVLLKIEKQQAYSHLLLNETIKKS---NLNQKDVPLLTELVYGTIQYQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L       L + +  +  LLR+++ Q++YLD + D A V  AV+ AK+ + ++ 
Sbjct: 57  KLLDFYLKPFSKRPLEKLEPWVLVLLRLTLYQMVYLDRIPDRAAVHEAVQIAKK-RGHQG 115

Query: 120 FAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            + +VN ILR + R +        + ++R+A  +  PEW  +R  + YG ++   ++ A 
Sbjct: 116 ISGMVNGILRSIQRNELPQLDTVKDPVERLALKTSHPEWLIKRWIDQYGIDKTEEMALAN 175

Query: 173 ISPLYIDLTVK---FDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           ++     + V      +E     L      A         +     S+++   F +G   
Sbjct: 176 LTHPTHSVRVNELNASVEEVIAALKNEGIEAEQSKNIPESVLIYKGSVINTKPFVDGWIT 235

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           VQD  + +         N  VLD CAAPGGK+      + +  ++ +LD+ K ++  +  
Sbjct: 236 VQDEGSMLVAHALSPKENERVLDACAAPGGKSTHIAEKMKNSGQIVSLDIHKHKVGLIEK 295

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           N  RL+L   +  ++DA        +  FD +LVDAPCS  G I+R PD+ W+++  DI 
Sbjct: 296 NAKRLNLSIINTEQLDARQVSGQFEEHSFDRILVDAPCSGLGVIQRKPDLKWSKNEGDIN 355

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q ++L      +K GG +V+S C++DK+++ EV+ + ++      +         
Sbjct: 356 RLAQIQTEILEAVWPLLKKGGTLVYSTCTVDKEENNEVITQFVQK-KENAQFDDQLMDRL 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
                       G I++ P             DGFF  
Sbjct: 415 PKAFHDCKGKGNGMIQLFPG--------EQSTDGFFIS 444


>gi|253991652|ref|YP_003043008.1| 16S rRNA methyltransferase B [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783102|emb|CAQ86267.1| ribosomal RNA small subunit methyltransferase B [Photorhabdus
           asymbiotica]
          Length = 429

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 209/454 (46%), Gaps = 40/454 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  ++ V+ +  SL+ +L         + ++ +D+ L++      LR L
Sbjct: 1   MKNTYNLRSIAAKAITQVLDQGQSLSTVLPKL-----QQNITDKDKSLLQEFSFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE--QAKRDKENR 118
           P+++ ++  ++   L  K+ ++  LL V + Q+ Y  +  +A +   V      +  + +
Sbjct: 56  PQLEWIIIQLMAKPLKGKQRTIHYLLMVGIYQLAYTRIPAHAALAETVNGVVTLKYPQLK 115

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPLY 177
                V    +R   + IE  Q  +   + PEW   R++  Y +E    I+ +    P++
Sbjct: 116 GLINGVLRQFQRQQLQLIEHSQSHSSYHLHPEWLSTRIQKAYPQEWQQLINVNNQKPPMW 175

Query: 178 IDLT-VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASA 230
           + +  +    + +   L+   +                P  +  LPGF +G   VQD SA
Sbjct: 176 LRVNRIYHSRDEYLTLLHKAGIDAEPAIELPFAIRVISPCPVAILPGFDKGWVTVQDVSA 235

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
               +L   +N   +LDLCAAPGGKT     I   ++V A+D+  +RL+++  NL RL+ 
Sbjct: 236 QGCAELLQPINGEKILDLCAAPGGKTTHLLEIAPESQVLAVDIDGQRLKRVEENLRRLNC 295

Query: 289 YA-EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +A   I +    +Y    + FD +L+DAPCS+TG IRRHPD+ W R  +DI +    Q +
Sbjct: 296 HATVKIGDGRYPEYWAENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQSE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           ++     ++K GG +V++ CS+   ++ + +   L+  P          A     D   A
Sbjct: 356 IIDAIWPYLKKGGTLVYATCSILPDENSQQINAFLKRHPD---------AELSGPDTREA 406

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +I P++         G DGFF   L +
Sbjct: 407 PGK----QIIPELT--------GGDGFFYARLIK 428


>gi|16762874|ref|NP_458491.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144361|ref|NP_807703.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213425783|ref|ZP_03358533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213859535|ref|ZP_03385239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289806045|ref|ZP_06536674.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|46396982|sp|Q8Z1X1|RSMB_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|25303750|pir||AH1009 sun protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16505181|emb|CAD09177.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139999|gb|AAO71563.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 429

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|304320686|ref|YP_003854329.1| tRNA and rRNA cytosine-C5-methylase-like protein [Parvularcula
           bermudensis HTCC2503]
 gi|303299588|gb|ADM09187.1| tRNA and rRNA cytosine-C5-methylase-like protein [Parvularcula
           bermudensis HTCC2503]
          Length = 455

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 224/439 (51%), Gaps = 12/439 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR  +  +L  + R+  +L   +       AF  L   D+   R ++   LR    
Sbjct: 26  PGLPARRAALDILLAI-RRGQALDMAMAE---SEAFEDLEGADRGFARTLIMAVLRRQNT 81

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +D      L   L   + ++  LLR++ AQIL L V  +A     V+ AK  +++  FAK
Sbjct: 82  LDEAYGTFLDRPLKSTQGTVITLLRLAAAQILLLGVPPHAATATTVDLAKERRDSAGFAK 141

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           L+N++ RR+  +   L++     + +P W   RLE  YG +    ++ A +    +DLT 
Sbjct: 142 LLNALCRRMVEKGPSLIEDYPPRTDVPGWLWRRLERHYGAKTARRLAAAFVQEPALDLTP 201

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKE-LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           K   E           P G + L+      I  LPG+ EG WW+QD +A++P+ L G L 
Sbjct: 202 KDPKERERLATALEAHPLGPVSLRRTAGGRIEDLPGYTEGDWWIQDLAAALPISLLGDLT 261

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              V DLCAAPGGKTAQL  +GA VTA+D+S +RL +L  NL RL L A D    D   +
Sbjct: 262 GQRVYDLCAAPGGKTAQLAAAGAHVTAVDISAKRLRRLEDNLARLGLRA-DTFVGDVLGF 320

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P +  D V++DAPC++TGT+RRHPD+LW++  +D+ + +  Q ++L      V+PGG +
Sbjct: 321 SPDEPADLVVLDAPCTATGTVRRHPDLLWSKKEEDVAELSALQDQMLHHAARLVRPGGRL 380

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           +F  CSL  ++ E+  +  L          PL+    + +   +  + +G +R  PD++ 
Sbjct: 381 MFITCSLLAEEGEDRSRAFLSRH-SQFTAEPLSDDEKERLG-PLNAAKDGHLRTRPDLIA 438

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  GMDGF+A    R
Sbjct: 439 DA----GGMDGFYAARFTR 453


>gi|317501927|ref|ZP_07960111.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896607|gb|EFV18694.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 456

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 108/468 (23%), Positives = 192/468 (41%), Gaps = 41/468 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R + + +L  V         +L      + ++ L +R++  +  +   TL  +
Sbjct: 1   MAKAINEREIVAAILMEVTENGRYSHIVLREVL--TKYQYLEKRERAFITRVTEGTLEHM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +LD      + + K  ++ +LR +V QI Y+D + D+AV   +V+ A + K    
Sbjct: 59  TEIDYILDCFSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVK-KGFSG 117

Query: 120 FAKLVNSILRRVSREKIELLQRIAG------ISIIPEWFKERLENFYGKERVLAISDACI 173
               VN +LR V +E  E+                PEW     +  Y    +  +     
Sbjct: 118 LRGYVNGVLRSVVKEIDEVEYPSDPIKRLSVRYSCPEWIIRLWKETYDLSLIETMLKDFQ 177

Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWW 224
           +     +         E    +L    +            L    + + SL  F EG++ 
Sbjct: 178 TEKPTTIRRCRSRITMEQLKKRLEEEHVLVENHPYLKDALLISKYDYLESLETFREGLFV 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGK---------TAQLIVSGAKVTALDVSKRR 275
           VQD S+ +  +L        V+DLCAAPGGK                   V A D+++ +
Sbjct: 238 VQDISSMLVGELAHVQAGAQVIDLCAAPGGKALDVAERILMEGQAGCSGHVEARDLTEYK 297

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  +  N++R+ L     +  DA  Y  K     D V+ D PCS  G + +  D+ +   
Sbjct: 298 VSLIEENIERMGLCNVTAVCQDASVYDEKSAGKADIVIADLPCSGLGVLGKKTDLKYKAS 357

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + IV     QRK+L    S+VKPGG +++S C+++ +++ E V   L+  P   E    
Sbjct: 358 PEGIVSLVKLQRKILSCAASYVKPGGELLYSTCTVNPKENIENVHWFLKEFP---EFYAD 414

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      +++  +++  G I++ P +           DGFF   LR+ 
Sbjct: 415 DIREDLCLELRESVTENGCIQLLPGV--------HKSDGFFIARLRKK 454


>gi|153815686|ref|ZP_01968354.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756]
 gi|145846927|gb|EDK23845.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756]
          Length = 456

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 106/468 (22%), Positives = 193/468 (41%), Gaps = 41/468 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R + + +L  V         +L      + ++ L +R++  +  +   TL  +
Sbjct: 1   MAKAINEREIVAAILMEVTENGRYSHIVLREVL--TKYQYLEKRERAFITRVTEGTLEHM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +LD      + + K  ++ +LR +V QI Y+D + D+AV   +V+ A + K    
Sbjct: 59  TEIDYILDCFSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVK-KGFSG 117

Query: 120 FAKLVNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
               VN +LR             + ++R++     PEW     +  Y    +  +     
Sbjct: 118 LRGYVNGVLRSVVKGIDEVEYPSDPIKRLSVRYSCPEWIIRLWKETYDLSLIETMLKDFQ 177

Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWW 224
           +     +         E    +L    +            L    + + SL  F EG++ 
Sbjct: 178 TEKPTTIRRCRSRITMEQLKKRLEEEHVLVENHPYLKDALLISKYDYLESLETFREGLFV 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGK---------TAQLIVSGAKVTALDVSKRR 275
           VQD S+ +  +L        V+DLCAAPGGK                   V A D+++ +
Sbjct: 238 VQDISSMLVGELAHVQAGAQVIDLCAAPGGKALDVAERILMEGQAGCSGHVEARDLTEYK 297

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  +  N++R+ L     +  DA  Y  K     D V+ D PCS  G + +  D+ +   
Sbjct: 298 VSLIEENIERMGLCNVTAVCQDASVYDEKSAGKADIVIADLPCSGLGVLGKKTDLKYKAS 357

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + IV     QRK+L    S+VKPGG +++S C+++ +++ E V   L+  P   E    
Sbjct: 358 PEGIVSLVKLQRKILSCAASYVKPGGELLYSTCTVNPKENIENVHWFLKEFP---EFYAD 414

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      +++  +++  G I++ P +           DGFF   LR+ 
Sbjct: 415 DIREDLCLELRESVTENGCIQLLPGV--------HKSDGFFIARLRKK 454


>gi|326790876|ref|YP_004308697.1| sun protein [Clostridium lentocellum DSM 5427]
 gi|326541640|gb|ADZ83499.1| sun protein [Clostridium lentocellum DSM 5427]
          Length = 445

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 106/464 (22%), Positives = 208/464 (44%), Gaps = 45/464 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M      R     LL  + ++      +L     D     +  +D+  V  +V  TL++ 
Sbjct: 1   MNKT--VREQIVDLLIEIEKEASYAQLVLKRALQD-----IDAKDKGFVTEVVYGTLKYQ 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D +L+    + + R K  ++ ++R+S+ Q+LYLD V   A+++ AV+  K+ ++ ++
Sbjct: 54  IKLDYILNQFSKTPVHRMKPLIRNVMRMSLYQMLYLDKVPTSAIINEAVKIVKK-RKFQN 112

Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170
            +  VN +LR + R++ +++           ++    IPEW  E     Y +E V +I +
Sbjct: 113 LSGFVNGLLRNIDRQREQIIYPDETKNLVLAMSIHYAIPEWMIEEWLKVYKEEEVKSICE 172

Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221
           A      +                                     +  +++ + P F +G
Sbjct: 173 ALNERAEVCARYNTLKTNKLEFEETLKVEGIQLKEGAFLEEAFYLKGVDNLQNSPSFKKG 232

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            W VQD SA +   +        +LD+C+APGGK+  +   + +  ++ + D+   +LE 
Sbjct: 233 EWTVQDESAMLVAHVMAPQKGDCILDMCSAPGGKSIHMAELMENAGRIVSCDIHPHKLEL 292

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           ++ N +R+ +   +    D        +  FD VL+DAPCS  G ++R PD+   +  + 
Sbjct: 293 IKKNAERMGITIIEPTLQDGTLKNECYVEAFDKVLLDAPCSGLGIMKRKPDIRTHKSKEG 352

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +++    Q+KL L  IS++KPGG +V+S C++  +++E +V  +       + L   N  
Sbjct: 353 LLEIVALQKKLALAAISYLKPGGRLVYSTCTISHEENEGMVSYI-----KALGLELENIV 407

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  A+  +G I+I P M         G DGFF  + ++
Sbjct: 408 DTIPSPLKRAIKEKGMIQILPHMA--------GTDGFFIASFKK 443


>gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536]
 gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536]
          Length = 429

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCA PGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAGPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L    S +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4]
 gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4]
          Length = 427

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 206/452 (45%), Gaps = 38/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++ ++  V+ K +SL+  L  +      RL S +D+ L+  +    +R L
Sbjct: 1   MK---NLRALAARVVFQVLEKGVSLSVALPEQ----QQRLTSGKDKALLAELCYGVMRHL 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P++D ++   +   L  K+  + QLL V   Q+ +  +  +A +    E A R  +    
Sbjct: 54  PQLDKLVSDCMSKPLKGKQRIVHQLLLVGCYQLYFTRIPGHAAISETAE-ACRQLKFEGL 112

Query: 121 AKLVNSILRRVSREKIELLQRIAGISI-IPEWFKERLENFYGKERVLAISDACISPLYI- 178
            K+VN +LR + R +  L +    ++   P W  +RL+  Y       I+ +   P    
Sbjct: 113 VKVVNGVLRNLQRNQKPLPEDNETLAFNTPAWLIKRLKAAYPDSWQEMIAQSHQRPPMWL 172

Query: 179 -DLTVKFDIETWA-----HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            +  +    E +       ++ A    +    L E P+ +  LPGFA+GV  VQD +A  
Sbjct: 173 RNNQLSQTREQYLTLLDEQEIAATPGASNDAILLESPKDVGMLPGFADGVASVQDGAAQW 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L     N  +LD CAAPGGK+           + A+D   +RLE+++ NLDRL L A
Sbjct: 233 AASLLAPEANELILDACAAPGGKSCHLLESQPSIDLVAVDFDAKRLERVQQNLDRLSLKA 292

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L
Sbjct: 293 KLVHGDAAKIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELATLQSQIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                ++KPGG ++++ CS+  Q++ E +   L  +     L+P+              S
Sbjct: 353 DHCWQWLKPGGTLLYATCSILPQENAEQIAAFLART-QDATLIPI---------AQQQNS 402

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +   +ITP            MDGF+   L +
Sbjct: 403 DDIGWQITPG--------QDNMDGFYYARLVK 426


>gi|322418095|ref|YP_004197318.1| sun protein [Geobacter sp. M18]
 gi|320124482|gb|ADW12042.1| sun protein [Geobacter sp. M18]
          Length = 479

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 114/464 (24%), Positives = 189/464 (40%), Gaps = 42/464 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  N R  +  +L  + +++     L+D E        +   D+ L+  +V   LR    
Sbjct: 32  SSKNPRRAAFDILLRIEKEKSFADILIDHELSKDM---IKGADRGLLTELVYGVLRRQGT 88

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +D ++         + +  +  LLR+ + Q  +LD V   A V+  V+ AK        +
Sbjct: 89  LDHIIGQFSKQRTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNETVKLAKE--LAPRAS 146

Query: 122 KLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDAC 172
             +N+ILR   R +  +             A     P W   +     G E   A++ A 
Sbjct: 147 GFINAILRNADRNRDNISYPDRAENPVGYLAVRYSHPAWLTSQWCEQLGVEGAEALAAAM 206

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVW 223
             P    + V       E    +L    +     R             I  LP F +G++
Sbjct: 207 SEPPPFTIRVNTLRISREALMARLAEEGISCSETRWSPDGIRLNQSGQITRLPSFRDGLF 266

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD S+ +            VLD C+APGGKT Q+   + +  ++ A DV+ ++L  ++
Sbjct: 267 TVQDESSQLAPLFLSPEKGDRVLDACSAPGGKTTQIAQLMGNSGEIYACDVNHKKLRLIK 326

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
              DRL + +     MDA    P      F  +LVDAPCS  G IRR+P+  W++  DD+
Sbjct: 327 ETCDRLGITSVRTFTMDATSPSPAIKEVTFQRILVDAPCSGLGVIRRNPEGKWSKSPDDL 386

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           ++ A  Q  +L     ++   G ++++ CS   Q++E V+   LR  P  V         
Sbjct: 387 LQQARTQVTILENLCKYLDKSGTLLYATCSTSVQENEYVIDTFLREHPEFV----AEDLR 442

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               + A   +  G+ R  P           GMDGFFA  L+++
Sbjct: 443 TLFPEFAPLFTERGFFRSWPH--------RDGMDGFFAARLKKI 478


>gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4]
 gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4]
          Length = 426

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 122/448 (27%), Positives = 201/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ ++  V+ K ISL+  L ++         S +D+ L+  +    +R LP++D
Sbjct: 1   MNLRALAAKVVFQVLEKGISLSVALPVQQKHLD----SGKDKALLAELCYGVMRHLPQLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   +   +  K+  + QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KQVSDCMSKQMKGKQRIVHQLLLVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R++  L      +    P W  +RL+  Y       I  +   P     +  
Sbjct: 116 NGVLRNIQRQEKPLSTDNDTLAYNTPAWIIKRLQAAYPDNWQTVIEQSHERPPMWLRNNQ 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                ET+   L      A    +    L   P  ++ LPGF  G   VQD +A     L
Sbjct: 176 QSQTRETYLQALAGLDIEAQAGNSPDSILLSSPRDVMQLPGFESGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                +  VLD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE + 
Sbjct: 236 LAPQGDELVLDACAAPGGKSCHLLELAPDIKLVAVDFDAKRLERVQQNLDRLSLKAELVH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +     FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q ++     
Sbjct: 296 GDAANIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAQLQSQIFDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++++ V   L  +P    LVP+                   
Sbjct: 356 KWLKPGGTLLYATCSILPQENKDQVSAFLARTPDAT-LVPIEQQANPD------------ 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                D+  +I      MDGF+   L +
Sbjct: 403 -----DIGWQIVPGQDNMDGFYYARLVK 425


>gi|323692061|ref|ZP_08106308.1| sun protein [Clostridium symbiosum WAL-14673]
 gi|323503861|gb|EGB19676.1| sun protein [Clostridium symbiosum WAL-14673]
          Length = 449

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 102/457 (22%), Positives = 201/457 (43%), Gaps = 32/457 (7%)

Query: 1   MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     A R +   +L  V+ K      +L      + ++ L ++D+  ++ +V+ T+ +
Sbjct: 6   MTVKEPALREIILDILLEVLEKGKYSHVILSQAL--TKYQYLEKQDRSFIKRVVDGTVEY 63

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             ++D +L+      + + K  ++ +LR+S  QI ++D V D A  + AV+ A++ +   
Sbjct: 64  RIQLDYILNSYSKVKVNKMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEK-RGFS 122

Query: 119 HFAKLVNSILRRVSR-EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                VN +LR +SR +   +    +    +PEW     ++ YG+E    + ++ +    
Sbjct: 123 GLKGFVNGVLRSISRGKDNLVFPDDSIRYSMPEWLASMWKSAYGEETFRRMMESFLKDRP 182

Query: 178 IDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           +   +  +       L+++               +   E  + +  L  F EG   +QD 
Sbjct: 183 LMARLCLNRAEKQQILDSLGAQGVTAKDSRYADDVICLEGVDYLEGLEAFREGWLQIQDL 242

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285
           S+S+     G  +   V+D+C APGGK             V   D+S+ ++  +  N+ R
Sbjct: 243 SSSLAGDAAGIKDGDYVIDVCGAPGGKGLHAADILGGTGMVEIRDISEAKVSLIEENIGR 302

Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             L        DA  + P  ++  D V+ D PCS  G I R PD+ +    + +   AC 
Sbjct: 303 SGLTNLRAAVCDALSFDPDSEEAADVVIADLPCSGLGIIGRKPDIKYNMTPEKLHDLACL 362

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR++L     +VKPGG +V+S C+++++++E+ ++  L   P      P+N        +
Sbjct: 363 QREILSVVQRYVKPGGTLVYSTCTVNREENEDNMRWFLEHFP----FEPVNLKGRLGEKL 418

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +      G+I+  P +           DGFF   +++
Sbjct: 419 SELSMESGYIQFLPGI--------HPCDGFFIAVMKK 447


>gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
 gi|188019701|gb|EDU57741.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
          Length = 428

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 115/454 (25%), Positives = 203/454 (44%), Gaps = 43/454 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +  V+    SL+ +L         + ++++D+ L++ I    LR+L
Sbjct: 1   MKNTYNLRSIAAVAIGQVIDGGQSLSTVLPEL-----QKNINEKDKSLLQEICFGVLRYL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--R 118
           P+++  +  ++   L  K+ +L  L+ V + Q+LY  +  +A +   V  A   K    +
Sbjct: 56  PKLEWFVAQLMEKPLTGKQRTLHYLIMVGIYQLLYTRIPPHAALAETVNGAVALKRPQLK 115

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPLY 177
                V    +R   +  E     +   + P W  +RL+N Y  +    I  +    P++
Sbjct: 116 GLINGVLRSFQRQQTQLEERNTNNSSQYLHPSWLLKRLQNAYPDKWQTIIDANNQRPPMW 175

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASA 230
           + +  +        K          +              S+  LPGF +G   VQD SA
Sbjct: 176 LRVNSQHHTAEQYQKYLEENEIASELHPHHPCAIKLSEPTSVTRLPGFEKGWATVQDVSA 235

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHL 288
               +L    N+ ++LDLCAAPGGKT  ++     A V A+D+ + RL++++ NL RL  
Sbjct: 236 QGCAELLEPQNHETILDLCAAPGGKTTHILELAPKAHVVAVDIDEHRLKRVKENLQRLQQ 295

Query: 289 YAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A  I        ++   +LFD +L+DAPCS+TG IRRHPD+ W R   DI +    Q K
Sbjct: 296 QAAVIQGDGTKPEEWANGQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELTELQAK 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L     ++K GG +V++ CS+  +++   ++  L   P                + ++ 
Sbjct: 356 ILESIWPYLKVGGTLVYATCSIMPEENSLQIKNFLAKHP----------------EASLN 399

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++I P +         G DGFF   L +
Sbjct: 400 DGTTAGLQILPSIT--------GGDGFFYARLVK 425


>gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           rodentium ICC168]
 gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           rodentium ICC168]
          Length = 429

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 210/458 (45%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MNKKLNLRSIAAQAVEQVVEQGHSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++  ++   +  K+ +L  L+ V   Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLIGKLMSRPMTGKQRTLHYLIMVGFYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R +  LL   A      + P W  +RL+  +  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRNQDALLAEFAHSEARFLHPSWLLKRLQKAWP-EQWESIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V         W   L    +                P  + +LPGF +G    QDA
Sbjct: 174 MWLRVNRTHHTRNAWLALLEEAGMKGFTHPDYPDAVRLDTPVPVHALPGFDKGWVTAQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   V      N   +LDLCAAPGGKT  ++     AKV A+DV ++RL ++  NL RL
Sbjct: 234 SAQGCVAFLAPQNGEQILDLCAAPGGKTTHILEAAPDAKVLAVDVDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            +    + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GM-NATVKQGDGRYPLQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAAL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +KPGG +V++ CS+  +++ + ++  L+ +                  +
Sbjct: 353 QAEILDAVWPHLKPGGTLVYATCSVLPEENSQQIKAFLQRTADA--------------TL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +   +PE      P +  +    +   DGFF   L + 
Sbjct: 399 SETGTPE-----LPGL--QNLPGAEEGDGFFYAKLIKK 429


>gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016]
 gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
 gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016]
 gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
          Length = 426

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 122/454 (26%), Positives = 210/454 (46%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ +  SL+  L       A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYQVVDRGNSLSTALPE-----AQQSIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SIAGKLMDKPLKGKQRVFHHLILVGLYQLGHMRIPAHAAVGETVEGAQALKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   RE+       +   AG  + P W  + L++ Y  + + +  ++   +P+++ 
Sbjct: 115 NAVLRNYQREQQALDEFSVSHNAGKYVHPSWLLKILQDAYPEQWQTIVEANNNKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +     D + +   L    + +              P  + SLPGF +G   VQDA+A +
Sbjct: 175 VNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
                   +   +LD CAAPGGKTA     VS  +V ALD  ++RL+++  NL RL+L A
Sbjct: 235 SFNYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +   +   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q ++ 
Sbjct: 295 KVICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+   ++ E V+  L  +P                 +  +  
Sbjct: 355 DAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTPAA--------------QLVGSER 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +I P            MDGF+   L +  
Sbjct: 401 ENPGRQILPG--------EEDMDGFYYAVLVKQA 426


>gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
           ATCC 7061]
 gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
           ATCC 7061]
          Length = 442

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 115/456 (25%), Positives = 204/456 (44%), Gaps = 38/456 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R ++   L  + + +     LL     D   + L+ +D+ L+  +V  TL+    +D +L
Sbjct: 2   RELALDALIKLEQNQAYSNLLLQSVMKD---KDLADQDKPLLTELVYGTLQNKLALDYML 58

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +     +    + QLLR+S+ Q++YL+ +   A +  AVE  K+ + ++  + LVN 
Sbjct: 59  APFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPHRAAIHEAVELTKK-RGHKGISSLVNG 116

Query: 127 ILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +LR V RE +     I       +  +  P W  +     YG E   ++    + P    
Sbjct: 117 VLRSVQREGVPAFDDIKDPVKRLSIETSHPLWLVQEWVQSYGFEAAESMCRIHLVPPKQT 176

Query: 180 LTVKFD---IETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDASAS 231
           L V            +L    + T         LK +  SIVS P F EG   +QD S+ 
Sbjct: 177 LRVNRMKIGRAALQQELLDAGIETELGDLSEDALKLMKGSIVSTPSFQEGYVTIQDESSM 236

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +  +        +VLD CAAPGGK+      +    ++ +LD+ + +++ ++    RL+L
Sbjct: 237 LVARALDPQPGEAVLDACAAPGGKSTHIAERMNDKGQIVSLDLHEHKVKLIKQAAKRLNL 296

Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
              +   +DA        +  FD +L+DAPCS  G IRR PD+ +T+  +D  + A  Q+
Sbjct: 297 TQIEAKALDARKAKGDYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSKEDSARLAAIQQ 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L +    +KPGG +V+S C++D  ++++V+   L+         P  S   +  +   
Sbjct: 357 AILKETAPLLKPGGTLVYSTCTMDPTENQQVIHAFLQEHQDF---EPDLSLNERLPEQVA 413

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                G ++I P           G DGFF  ++R+ 
Sbjct: 414 PFVQNGSVQILPHYF--------GTDGFFICSMRKK 441


>gi|331659579|ref|ZP_08360517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA206]
 gi|331052794|gb|EGI24827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA206]
          Length = 429

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKISDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N ILR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGILRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|304392692|ref|ZP_07374632.1| ribosomal RNA small subunit methyltransferase B [Ahrensia sp.
           R2A130]
 gi|303295322|gb|EFL89682.1| ribosomal RNA small subunit methyltransferase B [Ahrensia sp.
           R2A130]
          Length = 471

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 176/454 (38%), Positives = 259/454 (57%), Gaps = 18/454 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR V++ LL+ ++     L  LLD  +G +A R + + D++LVRAIV   LR   
Sbjct: 23  KPGLAARQVATTLLTRIVDDGRGLDGLLDTRHGPAALRDMPEADRLLVRAIVTTALRHRG 82

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  LD  +    P+    L   L V+ AQIL+++V D A VDLAV     D+ +  F+
Sbjct: 83  EIEHALDRCMDRKPPKNARQLIHALHVAAAQILFMEVPDSAAVDLAVTALSSDQRSTRFS 142

Query: 122 KLVNSILRRVSREKIELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLY 177
            L N++LRR+ REK  L + ++  +     +P W ++R    YGKER+ +I+   +    
Sbjct: 143 GLANAVLRRMGREKDTLFEAMSDEARAVINMPPWLRKRTRKSYGKERLASIAMRHMQEPV 202

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           ID+ V+ + E WA KL  V    G         +I + PG+ +G WWVQDA+A +P QL 
Sbjct: 203 IDICVRENPEEWAEKLGGV-HLFGNAVRVMREGAIHTWPGYDDGGWWVQDAAAQLPAQLM 261

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           G ++   VLDLCAAPGGKTAQL  +GA VTAL+++  RL +L+ N++RL L   + IE D
Sbjct: 262 GDIDGKRVLDLCAAPGGKTAQLAAAGASVTALELNASRLHRLKGNMERLKLD-VETIEGD 320

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            F+Y P +LFDAVL+DAPCSS GTIRRHPDV W +    + + A  Q+++     +F+KP
Sbjct: 321 LFEYEPAELFDAVLLDAPCSSLGTIRRHPDVQWAKSQAIVEELADLQKRMCEHAATFIKP 380

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG ++F+NCSLD+ + E+VV  +      P+EL PL       +D    ++ +G +R  P
Sbjct: 381 GGTLIFANCSLDRAEGEDVVAAI-TKGAAPLELSPLTPDDLFGLD--DFITGQGTVRTHP 437

Query: 418 DMLEKIDGVS---------SGMDGFFAVALRRLI 442
             L  +   +          G+DGFFA    R  
Sbjct: 438 GQLNDVPPPTSADVDPARYGGLDGFFAARFIRTA 471


>gi|281180323|dbj|BAI56653.1| putative rRNA methylase [Escherichia coli SE15]
          Length = 429

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRNPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|319780892|ref|YP_004140368.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166780|gb|ADV10318.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 475

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 196/424 (46%), Positives = 261/424 (61%), Gaps = 5/424 (1%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  R  L  L D E G   ++ L  RD+ LVRAI+   LR+   I  +L   L   LP 
Sbjct: 54  VIDARTPLDGLTDHENGHPQYKALDLRDRGLVRAILVTALRYRMTISGLLARRLEKPLPP 113

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L V+ AQIL+LD+ D A VD+AV  AK D     F+ LVN +LR ++R K  
Sbjct: 114 NATALSHILHVAAAQILFLDIPDSAAVDIAVTHAKSDPRTVRFSGLVNGVLRTLARAKET 173

Query: 138 L-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196
                +A     P+WF ERL+  YG E+   I +A      +D +VK D   WA KL  +
Sbjct: 174 ELPAALAATDEAPKWFSERLKTTYGNEKARQILEAHRVEAPVDFSVKADPGLWAEKLGGI 233

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
           +LPTG +R++ L   +  LPGFAEG WWVQDA+AS+P +LFG +  L V DLCAAPGGKT
Sbjct: 234 VLPTGTVRVENLVGPVTELPGFAEGAWWVQDAAASLPARLFGDVTGLRVADLCAAPGGKT 293

Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316
           AQLIV+GAKVTA+D SK RL +L  NL+RL L AE + + D   Y PK+LFDAVL+DAPC
Sbjct: 294 AQLIVAGAKVTAVDTSKNRLVRLTQNLERLGLSAEIV-QADLLKYEPKELFDAVLLDAPC 352

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           SSTGT+RRHPDV WT+ + D+ K A  QR+LL + ++ VKPGG +VFSNCSLD  + E++
Sbjct: 353 SSTGTVRRHPDVPWTKTSADVEKLADLQRRLLARTVTLVKPGGRIVFSNCSLDPLEGEDL 412

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
            +  L  +P   E+        +   +   L+P+G +R TP  L+      SG+DGFFA 
Sbjct: 413 CRAFLAGTP---EITNDPLLQGEIAGIDPFLTPQGTLRTTPADLDLGAPERSGLDGFFAA 469

Query: 437 ALRR 440
            +RR
Sbjct: 470 RMRR 473


>gi|116747600|ref|YP_844287.1| sun protein [Syntrophobacter fumaroxidans MPOB]
 gi|116696664|gb|ABK15852.1| sun protein [Syntrophobacter fumaroxidans MPOB]
          Length = 449

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 207/461 (44%), Gaps = 40/461 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +NAR+++  +L  + R       L+    G      L +RD+ L+  +V   LR+  R+D
Sbjct: 2   INARVLAFQILLHMDRDASHPDRLIRGMLGRHE--RLEERDRALLTELVYGVLRWQGRLD 59

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             +D +  +   +   +++ LLR+++ QIL LD + D+A V+ AV  AK  +   +  K 
Sbjct: 60  WHIDQLSRTRPEKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTTQ-PAYLVKF 118

Query: 124 VNSILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR   R +   +   AG             P W+ ERL + +G E  L I +A  +
Sbjct: 119 VNGVLREALRRRSRWIWPEAGEEPGKYIAVTTAHPIWYVERLLHEFGFEETLDICNANNT 178

Query: 175 PLYIDLTVK---FDIETWAHKLNAVMLPTGG-------IRLKELPESIVSLPGFAEGVWW 224
              + L V      I+T         +           +RL  L   +     + +G+  
Sbjct: 179 VAPMTLRVNALKTSIDTILQWCAEHGIDAEPSGVVPTAVRLSGLRRDLAETSIYRDGLVQ 238

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           VQD ++ I   L        VLDLCA  GGK+     L+    +V A+D S  +LE+LR 
Sbjct: 239 VQDEASQIVSTLVAPRAGERVLDLCAGFGGKSTHLGILMGDRGEVVAVDNSAWKLEELRK 298

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           N  R  L        D F++ P     FD VL+DAPCS  GT+RR+PD+ W R   D  +
Sbjct: 299 NARRQGLRIIKPRTADLFEFSPGTEDLFDRVLLDAPCSGFGTLRRNPDIKWRRHLKDPRR 358

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q+++L     FVKPGG +V+S C+L +++++ V +    S P       +      
Sbjct: 359 FGRIQKEMLDHAARFVKPGGALVYSACTLFQEENDAVAEHFAASHPDWQ----IEPVGPD 414

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             D    ++   + R  P            +DGFFA  L+R
Sbjct: 415 LPDACRGMASGPFFRTWPH--------RHQVDGFFAARLKR 447


>gi|191174468|ref|ZP_03035969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           F11]
 gi|300973968|ref|ZP_07172375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 200-1]
 gi|306816369|ref|ZP_07450507.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
 gi|190905276|gb|EDV64914.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           F11]
 gi|222034997|emb|CAP77740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           LF82]
 gi|300308978|gb|EFJ63498.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 200-1]
 gi|305850765|gb|EFM51222.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
 gi|312947839|gb|ADR28666.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324014965|gb|EGB84184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 60-1]
          Length = 429

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 213/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L    S +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 457

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 122/485 (25%), Positives = 192/485 (39%), Gaps = 80/485 (16%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR ++   L  + R+      +L     +S    L   D+ LV  +V    R    +D
Sbjct: 1   MNARQLALLALQKIERQNAYADLVLGHLLANS---SLIPADRHLVSELVYGITRRRRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
           A++D +      ++   L+ +L + + Q+ +LD +   A +  +VE A++         +
Sbjct: 58  ALIDCLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMGLG-SLTGV 116

Query: 124 VNSILRRVSREKIELLQRIA-----------------GISIIPEWFKERLENFYGKERVL 166
           VN ILR   R+ ++  ++                        P+W         G     
Sbjct: 117 VNGILRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPDWLVSLWWERLGPVETE 176

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLP 216
            +      P ++DL V          + A          +    G +RL++    I +LP
Sbjct: 177 QLCAWFNQPPHLDLRVNPLRADVNKVIQALAAAGIPALPISEVPGALRLQDHAGDITALP 236

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSK 273
           GFA+G W VQDASA   V          V+D CAAPGGKT Q+         + ALD   
Sbjct: 237 GFAQGWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHMQDRGEIWALDRHP 296

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMD------------------AFDYCPKKLFDAVLVDAP 315
            RL +L  N  RL L +   + +D                       P +  D VL+DAP
Sbjct: 297 HRLRRLEENRQRLGLSSIRPLAIDLLSLSAAADRVSGTESLPPAPLPPWQSADRVLLDAP 356

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  GT+ RH D  W +  + I + A  Q +LL     ++KPGG++V++ C+L   ++EE
Sbjct: 357 CSGLGTLHRHADARWRQTPERIPELAHLQAQLLQVAARWLKPGGVLVYATCTLHPAENEE 416

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           ++Q  L S P                           + I P   ++        DGFF 
Sbjct: 417 IIQAFLDSHPNWAAEGDP-------------------LLIWPHRQDR--------DGFFI 449

Query: 436 VALRR 440
             LRR
Sbjct: 450 QRLRR 454


>gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3]
 gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3]
          Length = 468

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 185/460 (40%), Gaps = 40/460 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  +L+ + +   +L  + D      +F    +RD+ LV  +V   LR+   +D  
Sbjct: 21  PRAVALRILTALEKGHRTLDQVADEALARVSFP--EKRDRALVTTLVYGVLRWRNTLDYT 78

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +     + L R   ++  +LR+ + Q+ +LD + D+A ++ +V+ +K+    R  +  VN
Sbjct: 79  IVHFSRTPLQRMDPAVLNILRLGLFQLRFLDRIPDFAAINSSVDLSKQAGLGR-LSGFVN 137

Query: 126 SILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACISPL 176
            +LR  +R   E                    PEW   R    +G E  + + D   +  
Sbjct: 138 GLLRSSTRHPGEPDPPDMDKDPVQALCVTKSFPEWMIRRWIARFGIEETVQLCDFLNTVP 197

Query: 177 YIDLTVKFDI---ETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            I + V       E  A  L                +        +  +  F  G + VQ
Sbjct: 198 PITVRVNGLRAAPEQVAASLAQEAAGVTPGRHAPEAVSFSSPKVPVHEMTAFGAGWFQVQ 257

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D +A +   L        VLD CA  GGKT  L   + +  ++ A D    +LE+L   +
Sbjct: 258 DEAAQLIGLLTDPRPGQRVLDACAGLGGKTGHLARLMENQGRIVAADRDTAKLERLAGEM 317

Query: 284 DRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            RL +     + +D            FD VL D PCS TG IRR+PD  W     D+ + 
Sbjct: 318 TRLGITNVRPMTLDMLVPEQLKDAGGFDRVLADCPCSGTGVIRRNPDTKWRLSEQDLARL 377

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L      V+ GG++V++ CS++ ++++ VVQ  L+  P       + +     
Sbjct: 378 QNDQIAMLTNLADHVRDGGLLVYAVCSMEPEENDAVVQSFLKRRPDFAIDTGVAADVPAV 437

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     G+ R  P           GMDGFF V L++
Sbjct: 438 AGFTDDP---GFFRTFP--------WRHGMDGFFGVRLKK 466


>gi|320195380|gb|EFW70007.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           WV_060327]
          Length = 429

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C K+ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGKQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|315297154|gb|EFU56434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 16-3]
          Length = 429

 Score =  269 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|331649085|ref|ZP_08350171.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M605]
 gi|330909333|gb|EGH37847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           AA86]
 gi|331041583|gb|EGI13727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M605]
          Length = 429

 Score =  269 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 213/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       +TW   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDTWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L    S +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|260857409|ref|YP_003231300.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O26:H11 str. 11368]
 gi|260870031|ref|YP_003236433.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O111:H- str. 11128]
 gi|257756058|dbj|BAI27560.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O26:H11 str. 11368]
 gi|257766387|dbj|BAI37882.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O111:H- str. 11128]
 gi|323154126|gb|EFZ40329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           EPECa14]
 gi|323179175|gb|EFZ64749.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           1180]
          Length = 429

 Score =  269 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 209/458 (45%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  ++ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQIVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V V Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGVYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAGFYASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNL 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               + EG                   DGFF   L + 
Sbjct: 413 PG--TEEG-------------------DGFFYAKLIKK 429


>gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 438

 Score =  269 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 210/456 (46%), Gaps = 45/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 11  MKK-QNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 64

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+L+  +  +A +   VE A   K  +  
Sbjct: 65  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVAIKRPQ-L 123

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ ELL   A      + P+W   RL+  Y +        +    P+
Sbjct: 124 KGLINGVLRQFQRQQEELLAEFAKSETRFLHPDWLLNRLKKAYPQRWQDIADANNQRPPM 183

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGF EG   VQDAS
Sbjct: 184 WLRVNRNHHTRDAWLALLEEAGMSGFAHDAYPDAVRLASPVPVHALPGFDEGWVTVQDAS 243

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT  ++    +  V A+D+  +RL ++  NL RL 
Sbjct: 244 AQGCMTWLEPKNGEQILDLCAAPGGKTTHILEVAPQASVMAVDIDDQRLSRVYDNLKRLG 303

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D     ++C +  FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 304 MKA-QVKQGDGRKPTEWCGETQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQ 362

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + +   L+ +P                 + 
Sbjct: 363 SEILDAIWPHLKPGGTLVYATCSILPEENSQQISAFLKRTPGA--------------TLR 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +PE          ++    +   DGFF   L +
Sbjct: 409 DTGTPE-------HPGQQNLPGAEEGDGFFYAKLIK 437


>gi|323487019|ref|ZP_08092331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           symbiosum WAL-14163]
 gi|323399667|gb|EGA92053.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           symbiosum WAL-14163]
          Length = 444

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 102/457 (22%), Positives = 201/457 (43%), Gaps = 32/457 (7%)

Query: 1   MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     A R +   +L  V+ K      +L      + ++ L ++D+  ++ +V+ T+ +
Sbjct: 1   MTVKEPALREIILDILLEVLEKGKYSHVILSQAL--TKYQYLEKQDRSFIKRVVDGTVEY 58

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             ++D +L+      + + K  ++ +LR+S  QI ++D V D A  + AV+ A++ +   
Sbjct: 59  RIQLDYILNSYSKVKVNKMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEK-RGFS 117

Query: 119 HFAKLVNSILRRVSR-EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                VN +LR +SR +   +    +    +PEW     ++ YG+E    + ++ +    
Sbjct: 118 GLKGFVNGVLRSISRGKDNLVFPDDSIRYSMPEWLASMWKSTYGEETFRRMMESFLKDRP 177

Query: 178 IDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           +   +  +       L+++               +   E  + +  L  F EG   +QD 
Sbjct: 178 LMARLCLNRAEKQQILDSLGAQGVTAKDSRYADDVICLEGVDYLEGLEAFREGWLQIQDL 237

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285
           S+S+     G  +   V+D+C APGGK             V   D+S+ ++  +  N+ R
Sbjct: 238 SSSLAGDAAGIKDGDYVIDVCGAPGGKGLHAADILGGTGMVEIRDISEAKVSLIEENIGR 297

Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             L        DA  + P  ++  D V+ D PCS  G I R PD+ +    + +   AC 
Sbjct: 298 SGLTNLRAAVCDALSFDPDSEEAADVVIADLPCSGLGIIGRKPDIKYNMTPEKLHDLACL 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR++L     +VKPGG +V+S C+++++++E+ ++  L   P      P+N        +
Sbjct: 358 QREILSVVQRYVKPGGTLVYSTCTVNREENEDNMRWFLEHFP----FEPVNLKGRLGEKL 413

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +      G+I+  P +           DGFF   +++
Sbjct: 414 SEPSMESGYIQFLPGI--------HPCDGFFIAVMKK 442


>gi|168823234|ref|ZP_02835234.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205354964|ref|YP_002228765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858650|ref|YP_002245301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224493261|sp|B5R1E5|RSMB_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493262|sp|B5RH47|RSMB_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|205274745|emb|CAR39801.1| sun protein [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205340499|gb|EDZ27263.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206710453|emb|CAR34811.1| sun protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326630113|gb|EGE36456.1| ribosomal RNA small subunit methyltransferase B [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 429

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|154505951|ref|ZP_02042689.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
 gi|153793969|gb|EDN76389.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
          Length = 448

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/462 (20%), Positives = 188/462 (40%), Gaps = 35/462 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +  R +   +L  V ++ +     L+       ++ L ++++  +  +   TL  +
Sbjct: 1   MTKQVTERELVLAILMEVTQQNVYSHLALNAVLE--KYQYLEKKERAFITRVTEGTLEHM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L+      + + K  ++ +LR +V Q+ Y+D V D AV + AV+ A + K    
Sbjct: 59  IELDYILNQFSKVKVNKMKPVIRNILRSAVYQLKYMDSVPDSAVCNEAVKLAVK-KGFGT 117

Query: 120 FAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
               VN +LR             E ++R++ +  +PEW  +  +  Y  + + ++  A  
Sbjct: 118 LRGFVNGVLRNVARGLDQVEYPTEGIERLSVVYSMPEWILKLWKKTYDLDVIESMLQAFQ 177

Query: 174 SPLYIDLTVK---FDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWW 224
               + +         E     L                   +  + +  L  F +G ++
Sbjct: 178 EETPVTIRCNLAKTTPENLKESLQKEGVTVTPHPYLSYAFWIQDYDHLSELESFQKGEFY 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRC 281
           VQD S+ +  +L        V+D+CAAPGGK   +         V A D+S  ++  +  
Sbjct: 238 VQDISSMLVGELADPKKGDRVIDVCAAPGGKALHVAEKLRGTGSVEARDLSLYKVGLITE 297

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           N++R  L     ++ DA           D V+ D PCS  G + +  D+ +        +
Sbjct: 298 NIERSGLTNIHAVQKDATVCDADVKDAADLVIADLPCSGLGVLAKKTDLKYKATEQSTKE 357

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR++L    S+V+PGG +++S C+++  ++ E V   L+  P    L P+      
Sbjct: 358 LAGLQREILKNAASYVRPGGTLIYSTCTINPAENIENVHWFLKEFP-EFVLDPIADRL-- 414

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +  ++   G +++ P +           DGFF     + 
Sbjct: 415 CSTLQNSVEEAGCLQLLPGI--------HKSDGFFIARFGKK 448


>gi|158338705|ref|YP_001519882.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
           marina MBIC11017]
 gi|158308946|gb|ABW30563.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
           marina MBIC11017]
          Length = 443

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 200/464 (43%), Gaps = 48/464 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R ++   L  V  +       L         + ++  D+ L+  ++  ++R  
Sbjct: 1   MTP--NPRQLAYRGLKAV-HRGAYADVALSRVM----PKTIADADRRLLTELLYGSVRRQ 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +DA++D        ++   L+ LL + + Q+ +LD + D A +   VE AK+++ +  
Sbjct: 54  RTLDALIDQFAKKPAHQQPPDLRTLLHLGLYQLRFLDHIPDAAAIFTTVELAKQNQLS-G 112

Query: 120 FAKLVNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
            +  VN +LR+ +R             + +Q +  +   P+W  +   +  G E    + 
Sbjct: 113 LSGFVNGLLRQYARAAANLNDPLELPPDPIQHLGILYSYPDWIVQVWHDQLGSEETEKLC 172

Query: 170 DACISPLYIDLTVK---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFA 219
           D C  P +IDL +     D E+   +L +              +R++     I  LPGF 
Sbjct: 173 DYCNQPPHIDLRINSLKTDRESVRSQLASAGVTTTPLPHLPQALRIEGKSGPIPQLPGFQ 232

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276
           EG+W VQ+ASA +   L         LD+CAAPGGKT  +   + +  +V A D +  RL
Sbjct: 233 EGLWTVQEASAQLVGHLLNPQPGAIALDVCAAPGGKTTHIAELMENQGEVWACDRTPSRL 292

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            KL  N  RL +    I   D+          D VLVDAPCS  GT+ RH D  W +  D
Sbjct: 293 RKLNQNTQRLGIDTVTIWTGDSRQLSNHIPLADYVLVDAPCSGLGTLHRHADARWQQTPD 352

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           +I   +  Q  LLL     VKPGGI+++S C+L   ++E ++ + L   P      P+  
Sbjct: 353 NIQDLSTLQLDLLLNSARRVKPGGILLYSTCTLHPLENENIIDQFLAQMPQWQTQQPIAE 412

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
               S   +        ++I P            MDGFF   LR
Sbjct: 413 WVPTSGPQSS-------VKILPH--------QQNMDGFFMAILR 441


>gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
           16795]
 gi|164603075|gb|EDQ96540.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
           16795]
          Length = 441

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 104/460 (22%), Positives = 215/460 (46%), Gaps = 43/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M +R ++  +L  + + +      ++  + D     L  RD+     I+   +     +D
Sbjct: 1   MKSRNLAYKVLFDIEKNQNYSNMAINKHFKD---CNLDNRDRGFATEIIYGVVENKIYLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D +      +    ++ LLR+ + QIL+LD V+DYA V+  V   K+   +   A  
Sbjct: 58  YIIDKLSKIKSNKLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKK--LDNRSAGF 115

Query: 124 VNSILRRVSRE--------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           VN++LR V R+          + +  +A      +W      + +G+E    + +A    
Sbjct: 116 VNAVLRNVIRQKEDIGEVKIKDTVDNLATKYSYNKWIVRNWISNFGREFTEDLLEANTER 175

Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQ 226
             I L V       +     L    +    +            ++I +   + +G++ VQ
Sbjct: 176 PSIYLRVNTLKTTRDELIKLLEEQEVNCEKVPFMDEAIKVNNLKNIENNELYKKGLFTVQ 235

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +  ++     +  VLD+C+APGGKT  +   + +  +V + D+ + +++ ++ ++
Sbjct: 236 DISSMLVGKILNPQKDTKVLDVCSAPGGKTTHIATLMENSGQVISRDIFEHKIKLIQNSV 295

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +RL L   D+   DA +        FD+VL D PCS  G I+R P++ + ++ ++I    
Sbjct: 296 NRLGLKNVDVQLFDALNLDKDSIDKFDSVLADVPCSGLGIIKRKPEIKY-KEKEEIKDLP 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+++L     +VK GG +++S C++   ++ EVV+  L+S+    +L  +     ++I
Sbjct: 355 KLQKQILQNAAKYVKVGGTLIYSTCTIQDDENIEVVESFLQSNK-RFKLEKI-----ENI 408

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ +    +G+++I P++         GMDGFF   L+R+
Sbjct: 409 NIDLENEDKGYLKIYPNV--------HGMDGFFIAKLKRV 440


>gi|307132808|ref|YP_003884824.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
           3937]
 gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
           3937]
          Length = 431

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 129/460 (28%), Positives = 207/460 (45%), Gaps = 46/460 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++  L  V+ +  SL+ LL     D     +S++D+ L++ I    LR L
Sbjct: 1   MKSKYNLRSIAATALVQVVEQGQSLSHLLPALQRD-----ISEKDRGLLQEICFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P++D  L  ++   L  K+  L  LL V + Q+++  +  +A +   V  A   K  +  
Sbjct: 56  PQLDWHLRQLMAKPLTGKQKVLHYLLMVGLYQLIHTRIPPHAALAETVNGAVALKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +    +R   E  + LQ        P+W  +RL+  Y ++    I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELQQRLQNNPARYAHPDWLLQRLKKAYPQQW-ERIVEANNQHPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V         +   L    +                P ++  LPGF +G   VQDA
Sbjct: 174 MWLRVNRQHHTRAAYLALLQEKEITAYPHAFYPDAIRLGTPCAVNQLPGFEQGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      ++  +LDLCAAPGGKT  ++     A V A+DV ++RL+++R NL RL
Sbjct: 234 SAQGCIHWLAPQDHEEILDLCAAPGGKTTHILEAAPHAHVLAVDVDEQRLKRVRENLQRL 293

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             +AE +   D     ++C  KLFD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GQHAE-VKCGDGRTPTEWCGDKLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+ +L      +K GG +V++ CS+  +++ + V   L+  P  V +             
Sbjct: 353 QQAILEAIWPRLKSGGTLVYATCSILPEENHQQVAAFLQRHPDAVLVDTGR--------- 403

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                             +    +   DGFF   L +  Q
Sbjct: 404 ------------LEHPGIQNLPAAEDGDGFFYAKLVKNGQ 431


>gi|91212715|ref|YP_542701.1| 16S rRNA methyltransferase B [Escherichia coli UTI89]
 gi|117625571|ref|YP_858894.1| 16S rRNA methyltransferase B [Escherichia coli APEC O1]
 gi|218560350|ref|YP_002393263.1| 16S rRNA methyltransferase B [Escherichia coli S88]
 gi|237703018|ref|ZP_04533499.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|123265979|sp|Q1R644|RSMB_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493249|sp|A1AGI0|RSMB_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766854|sp|B7MCQ4|RSMB_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|91074289|gb|ABE09170.1| SUN protein [Escherichia coli UTI89]
 gi|115514695|gb|ABJ02770.1| Sun protein [Escherichia coli APEC O1]
 gi|218367119|emb|CAR04893.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli S88]
 gi|226902282|gb|EEH88541.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294490375|gb|ADE89131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           IHE3034]
 gi|307628323|gb|ADN72627.1| 16S rRNA methyltransferase B [Escherichia coli UM146]
 gi|315284577|gb|EFU44022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 110-3]
 gi|323950202|gb|EGB46084.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H252]
 gi|323954589|gb|EGB50372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H263]
          Length = 429

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 213/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L    S +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSMLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|218702051|ref|YP_002409680.1| 16S rRNA methyltransferase B [Escherichia coli IAI39]
 gi|300935286|ref|ZP_07150297.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 21-1]
 gi|254766856|sp|B7NLK8|RSMB_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|218372037|emb|CAR19897.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           IAI39]
 gi|300459489|gb|EFK22982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 21-1]
          Length = 429

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|300903537|ref|ZP_07121459.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 84-1]
 gi|301305498|ref|ZP_07211590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 124-1]
 gi|300404410|gb|EFJ87948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 84-1]
 gi|300839193|gb|EFK66953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 124-1]
 gi|315255872|gb|EFU35840.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 85-1]
          Length = 429

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 209/458 (45%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNL 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               + EG                   DGFF   L + 
Sbjct: 413 PG--TEEG-------------------DGFFYAKLIKK 429


>gi|215488588|ref|YP_002331019.1| 16S rRNA methyltransferase B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968386|ref|ZP_07782596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           2362-75]
 gi|254766853|sp|B7UK12|RSMB_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|215266660|emb|CAS11099.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312287211|gb|EFR15121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           2362-75]
 gi|323189106|gb|EFZ74390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           RN587/1]
          Length = 429

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C K+ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGKQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
           StLB046]
          Length = 453

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 113/458 (24%), Positives = 201/458 (43%), Gaps = 42/458 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  +L  V + +     LL           +  +D+ L+  +   TL+    +D 
Sbjct: 12  NVRDAALTILLTVDKSQAYSNLLLHQTIEKYK---IDAKDRGLLTELTYGTLQHKLTLDY 68

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
            L+  +     +    ++ LLR+S+ Q+ YL  +  +A V+ AVE AKR + ++  A +V
Sbjct: 69  YLEPFIRG---KVDIWVRWLLRMSLYQMQYLTRIPAHAAVNEAVEIAKR-RGHKGIASMV 124

Query: 125 NSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR       R +    +  +R+A  +  P+W  +R    YG ++   +         
Sbjct: 125 NGILRSILREGVRSTDLIEDANERLAIETSHPQWLVDRWVESYGYDKTREMLLENNIAPL 184

Query: 178 IDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V     T    L         A         L            F  G+  +QD S
Sbjct: 185 QTVRVNTTKATVEQVLTTLEREGVKARRSEYIPECLHLESGQAARTGAFRNGLITIQDES 244

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +P ++      + VLD+CAAPGGKT     ++ +   + A D+  ++L+ +  N+ RL
Sbjct: 245 SMLPAKVLNPQPGMKVLDMCAAPGGKTTHLAEVMKNEGSILATDLHPKKLDLIEENVARL 304

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L   +   +D      +  K+ +DA+LVDAPCS  G +RR PD+ +T+  +D+      
Sbjct: 305 GLNIIETAPLDGRKAAGFLQKEGYDAILVDAPCSGLGVMRRKPDIKYTKREEDLESLQTI 364

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L   +  +K  G +V+S C++D+ ++E  VQ  L+  P  + LVP+ +   +    
Sbjct: 365 QLSILNNAVQLLKQDGRLVYSTCTVDRSENEGTVQAFLKEHP-EMNLVPIENLPTQL--- 420

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             A   +G +++ P  +        G DGFF  A  + 
Sbjct: 421 -EAKQQDGMLQVFPQDI--------GSDGFFVAAFVKK 449


>gi|89895438|ref|YP_518925.1| hypothetical protein DSY2692 [Desulfitobacterium hafniense Y51]
 gi|89334886|dbj|BAE84481.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 453

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 189/460 (41%), Gaps = 39/460 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++  +L  +  ++     ++     D +      R++ L   +VN TL+    +D  
Sbjct: 6   SRALAVQILQRIEEEKAYANLVMQKSLHDLS----DPRERQLTTLLVNGTLKHRLTLDYA 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L   L +    ++ +LR+S  Q+LYL  +     ++  VE  K+ +    +  LVN
Sbjct: 62  LRRHLRKPLSQLPREVRWILRISALQVLYLSRIPAAVAINEGVELTKKQQG--KYTSLVN 119

Query: 126 SILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           S+LRRV     E+L           ++     PEW  +R    YG     A+  A   P 
Sbjct: 120 SVLRRVLETGWEMLWPSQEKEPVRYLSLRYSHPEWMVKRWLKRYGMADTEALCQANNEPA 179

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227
            + +              +L    +            + E   S+  LP F EG++ VQD
Sbjct: 180 PVWIRTNTLKISRADLQARLEEEGVKVTIGERVPESLMIEEFGSLDQLPSFQEGLFTVQD 239

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
            S+ +   +        VLD C APGGKT      + +  ++ A D+   +++ +     
Sbjct: 240 ESSQLIAHVLNPQAGQKVLDACGAPGGKTTHLAQRMENQGEILAFDIHPHKVKLIEDLAA 299

Query: 285 RLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL +        DA +           VLVDAPCS  G +RR  D+ W ++ D+I     
Sbjct: 300 RLGITIIRAQAGDARELAGVKDASCHKVLVDAPCSGLGVLRRRADMRWHKEEDEIKTLPA 359

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSI 401
            Q  +L +    V  GG +V+S C+++ +++ EVV+      P      +     Y  + 
Sbjct: 360 LQLAILERAAQCVAAGGELVYSTCTIEPEENFEVVKAFRAKHPEFTTVDLSGELPYSLAS 419

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +     + +G+++I P           GMDGFF    RR+
Sbjct: 420 EQDRKQAAKGFLQILPH--------KQGMDGFFLAKFRRV 451


>gi|82778586|ref|YP_404935.1| 16S rRNA methyltransferase B [Shigella dysenteriae Sd197]
 gi|309785611|ref|ZP_07680242.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 1617]
 gi|123742076|sp|Q32B61|RSMB_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|81242734|gb|ABB63444.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308926731|gb|EFP72207.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 1617]
          Length = 429

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMSGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGKHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|324009054|gb|EGB78273.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 57-2]
          Length = 429

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 213/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L    S +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTTDA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|74313807|ref|YP_312226.1| 16S rRNA methyltransferase B [Shigella sonnei Ss046]
 gi|123759539|sp|Q3YWX1|RSMB_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|73857284|gb|AAZ89991.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 429

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum C str. Eklund]
 gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum C str. Eklund]
          Length = 443

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/457 (23%), Positives = 186/457 (40%), Gaps = 40/457 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR +   +L  V +K      +L      +    +  +D+ L+  IV  T+++   ID 
Sbjct: 3   KARKICVDVLEMVFKKNAYSNIVLRQTLNKNK---IDDKDKGLITEIVYGTIKYKYTIDT 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L+  L   +      +  +LR++V QI +LD + ++A V+ AVE AK+   +   +KLV
Sbjct: 60  ILNNYLKKGIKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKQ-RSVGASKLV 118

Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N +LR   R   +                   +W    L   YG E    I         
Sbjct: 119 NGVLRNYLRNLDKKYYNEKSLVETLCFKYSYDKWLVNMLIKQYGNEIAEDILKGLNERPA 178

Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V      +                        +    +SI   P F EG   VQD 
Sbjct: 179 VTVRVNNLKTDYDEAFKNLEDYGYDVEEGYICPEAIVINKGKSIEKNPLFKEGKITVQDE 238

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +           +VLDLC+APGGKT  +   + +   V A D+   ++  ++ N  R
Sbjct: 239 SAMLVAPSIDAKEGATVLDLCSAPGGKTTHISEIMNNTGIVKAFDIHDNKISLVKENAKR 298

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +      EMDA  +  +     D VL+D PCS  G IR+ P++ +T+D          
Sbjct: 299 LGINNIACAEMDACKFNKELENSADMVLIDVPCSGLGIIRKKPEIKYTKDVKSTKDIVAI 358

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+K++     +V+  G +V+S C+++K ++E+ +   ++  P            +     
Sbjct: 359 QKKIMENAAKYVRKEGTLVYSTCTINKDENEKNINWFIKKFPEYKV-----EPLFYGNMN 413

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  + +G + I P+           MDGFF   L++
Sbjct: 414 NIIYNEDGTVTILPNKY---------MDGFFIAKLKK 441


>gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
           CIP 101886]
 gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
           CIP 101886]
          Length = 426

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 203/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R V++ ++  V+ +  SL+  L       A + ++ RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAVAAQVIYQVVDQGQSLSAALP-----PAQQKVAPRDGALLQEICYGVLRWLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ Y+ +  +A V   V   K  K+ +    LV
Sbjct: 56  SITQSLMDKPLKGKQRVFHHLILVGLYQLSYMRIPAHAAVAETVNATKVLKKPQ-LRGLV 114

Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R +       +   AG    P W    L+  Y  +    +      +P+++ 
Sbjct: 115 NAVLRSYQRNQETLDAASVAHDAGKYGHPGWLLTLLQQAYPTQWEQVVEANHEKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       E +   L+   + T      E       P  + +LPGF+EG   VQDA+A +
Sbjct: 175 VNRTHHTREAYKALLDQAGIETSVHPEAEDALKLATPCDVTALPGFSEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYA 290
            V          +LD CAAPGGKT  ++       V A+DV   RL ++  N+ RL L A
Sbjct: 235 AVDYLKPQAGELILDCCAAPGGKTCHILEHEPSANVVAMDVDAARLTRVEDNVKRLKLKA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI +    Q ++L
Sbjct: 295 RVICGDARTPDEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIDQLVSLQSEIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +K GG +V++ CS+  Q++ E V+  L  +P  V              +     
Sbjct: 355 DAMWAQLKSGGTLVYATCSVTPQENAEQVKAFLTRTPDAV--------------LETGTP 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +   +I P            MDGF+   L++
Sbjct: 401 TQPGRQILPG--------QEDMDGFYYAVLKK 424


>gi|167648734|ref|YP_001686397.1| Fmu (Sun) domain-containing protein [Caulobacter sp. K31]
 gi|167351164|gb|ABZ73899.1| Fmu (Sun) domain protein [Caulobacter sp. K31]
          Length = 426

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 158/440 (35%), Positives = 226/440 (51%), Gaps = 23/440 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+ AR  +  L+   + +R  L          +AFR L  R++   RA+   TLR L  I
Sbjct: 8   GLPAREGALALIDAALSRRGGLDEA----ASANAFRFLEPRERAFARALAMATLRHLGPI 63

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D  L   L    P     ++ LLR+   Q  +L+V  +A V  +VE A   K +R F  L
Sbjct: 64  DRALAGKLAKEPP---PRVRNLLRLGATQAFFLEVPAFAAVATSVELAGASKTSRPFKGL 120

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           VN++LR + R+        A   + P W   R  + YGKE   A++         DL++K
Sbjct: 121 VNAVLRGLLRDGALSD---ASEHLAPPWLYARWVSAYGKETADAVAAQIGFEPATDLSLK 177

Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
            D +    A +L   +LP G +R  E    + + P F +GVWW+QDA+A+IP +L     
Sbjct: 178 PDFDATALAAELEGEILPGGTLR-TERRGDVSAWPAFDDGVWWIQDAAAAIPARLLNLKP 236

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             + LDLCAAPGGKT Q++ +GA+V A+D S  RL ++  NL R+ + AE I    A  +
Sbjct: 237 GETALDLCAAPGGKTMQMVAAGAQVVAIDRSPARLGRVTENLARMSMQAEVIAAD-AGAW 295

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FDAVL+DAPCS+TGT RRHPDVLW     D+   A  Q KLL      +KPGG +
Sbjct: 296 DDARTFDAVLLDAPCSATGTFRRHPDVLWAARPGDVASLAGVQSKLLDSAAGRLKPGGRL 355

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL+ ++ E  V+  L   P  + L P+ S    +   A +L+P G +RI P    
Sbjct: 356 VYCVCSLEPEEGEAQVEAFLARRP-DMALDPITSEEGGAP--AASLTPRGTLRILPHH-- 410

Query: 422 KIDGVSSGMDGFFAVALRRL 441
                  G+DGFFA    +L
Sbjct: 411 ----REGGLDGFFAARFVKL 426


>gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 426

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/455 (27%), Positives = 203/455 (44%), Gaps = 46/455 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ ++  V+ +  SLT +L       A + ++ RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAMAAKVIFQVVDQGQSLTAVLPK-----AQQQIADRDGALLQEICYGVLRWLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   ++   L  K+     L+ V + Q+ Y+ V  +A V   V  A +  +      LV
Sbjct: 56  AITQSLMEKPLTGKQRVFHHLILVGLYQLNYMRVPAHAAVAETVN-ATKPLKKPQLRGLV 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACIS-PLYID 179
           N++LR   RE+  L +      AG    P W  + L+N Y       +       P+++ 
Sbjct: 115 NAVLRNYQREQDALNEKAISHDAGRYGHPGWLLKLLQNAYPDSWQQIVDSNHQKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +     + + +   LNA  +        E       P  +  LPGF +G   VQDA+A +
Sbjct: 175 VNRTHHNRDEYLELLNAEGIEGEAHPEAEDAIKLGSPCDVTKLPGFEKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V          +LD CAAPGGKT         AKV A+D    RL ++  NL RL+L  
Sbjct: 235 SVNYLQPKAGELILDCCAAPGGKTCHILEHQPNAKVVAIDADANRLTRVEENLGRLNL-N 293

Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
            D+I  D     ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI +    Q ++
Sbjct: 294 ADVICGDARSPDEWWNGEDFDRILLDAPCSATGVIRRHPDIKWLRRADDIEQLVTLQAEI 353

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
                  +K GG +V++ CS+  Q++ E V+  L                    ++    
Sbjct: 354 FDAMWQKLKRGGTLVYATCSVTPQENAEQVKAFLARHDDA--------------NLQTGD 399

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +     +I P            MDGF+   L++  
Sbjct: 400 ADNPGRQILPG--------QDDMDGFYYAVLQKQA 426


>gi|82545651|ref|YP_409598.1| 16S rRNA methyltransferase B [Shigella boydii Sb227]
 gi|123728324|sp|Q31VY8|RSMB_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|81247062|gb|ABB67770.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320173933|gb|EFW49109.1| Ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae CDC 74-1112]
          Length = 429

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|16124357|ref|NP_418921.1| rRNA methyltransferase RsmB [Caulobacter crescentus CB15]
 gi|221233040|ref|YP_002515476.1| 16S rRNA m5C methyltransferase RsmB [Caulobacter crescentus NA1000]
 gi|13421207|gb|AAK22089.1| rRNA methyltransferase RsmB [Caulobacter crescentus CB15]
 gi|220962212|gb|ACL93568.1| 16S rRNA m5C methyltransferase RsmB [Caulobacter crescentus NA1000]
          Length = 429

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 157/441 (35%), Positives = 221/441 (50%), Gaps = 22/441 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+ AR  +  L+   + +R  L          + FR L  R++   RA+    LR L  I
Sbjct: 8   GLPAREAALTLIDAALSRRGGLDEA----ASANGFRFLEPRERAFARALAMAVLRHLGPI 63

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D  L   L  + P +   +  LLR+  AQ  YL+V  +A V  +VE A  +K +R F  L
Sbjct: 64  DRALTARLQKAPPDR---VMHLLRLGAAQAFYLEVPAFAAVATSVELAGANKTSRPFKGL 120

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           VN++LR + R+            + P W   R    +G+     I+         DL+ K
Sbjct: 121 VNAVLRGLLRDAPPAD---DPSLLAPPWLYARWVAAFGEATARQIAGQIAIEPATDLSAK 177

Query: 184 F--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              D+      L A +LP G +RL+     + + PGF +G WWVQDA+A++P +L     
Sbjct: 178 PGADLAPLVEALEAEVLPGGTLRLRR-KGDVAAWPGFEDGTWWVQDAAAAVPARLLDVQP 236

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             SVLDLCAAPGGKT QL  +GA+V ALD S  RL++L  NL R  L AE +   DA  +
Sbjct: 237 GASVLDLCAAPGGKTLQLAAAGAQVVALDRSAARLKRLSENLTRTGLSAEIV-AADAAVW 295

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FDA+L+DAPCS+TGT RRHPDVLW     D+   A  Q ++L      +KPG  +
Sbjct: 296 DDTRTFDAILLDAPCSATGTFRRHPDVLWAARPGDVASLANVQARILDAAADRLKPGARL 355

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-LSPEGWIRITPDML 420
           V+  CSL+ ++ E  V+  L      V L P+ +A   S     A L+P G +R+ P   
Sbjct: 356 VYCVCSLEPEEGEAQVEAFLARR-QDVALEPITAAEAPSAGFPEASLTPRGTLRLLPHH- 413

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                   G DGFFA   R+L
Sbjct: 414 -----RDDGQDGFFAARFRKL 429


>gi|157157639|ref|YP_001464756.1| 16S rRNA methyltransferase B [Escherichia coli E24377A]
 gi|193066472|ref|ZP_03047516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E22]
 gi|193071559|ref|ZP_03052468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E110019]
 gi|194430276|ref|ZP_03062771.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B171]
 gi|209920754|ref|YP_002294838.1| 16S rRNA methyltransferase B [Escherichia coli SE11]
 gi|218555846|ref|YP_002388759.1| 16S rRNA methyltransferase B [Escherichia coli IAI1]
 gi|218696981|ref|YP_002404648.1| 16S rRNA methyltransferase B [Escherichia coli 55989]
 gi|256020647|ref|ZP_05434512.1| 16S rRNA methyltransferase B [Shigella sp. D9]
 gi|260846086|ref|YP_003223864.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O103:H2 str. 12009]
 gi|293453607|ref|ZP_06664026.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B088]
 gi|300815501|ref|ZP_07095726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 107-1]
 gi|300822908|ref|ZP_07103044.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 119-7]
 gi|300918263|ref|ZP_07134867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 115-1]
 gi|300921903|ref|ZP_07138058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 182-1]
 gi|301325146|ref|ZP_07218678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 78-1]
 gi|307315133|ref|ZP_07594716.1| sun protein [Escherichia coli W]
 gi|309794564|ref|ZP_07688986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 145-7]
 gi|331670118|ref|ZP_08370957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA271]
 gi|331679357|ref|ZP_08380027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H591]
 gi|332281843|ref|ZP_08394256.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
           [Shigella sp. D9]
 gi|224493245|sp|A7ZSH7|RSMB_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766855|sp|B7LHZ0|RSMB_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766858|sp|B7M0Z4|RSMB_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|254766860|sp|B6I202|RSMB_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157079669|gb|ABV19377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E24377A]
 gi|192925853|gb|EDV80503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E22]
 gi|192955147|gb|EDV85641.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E110019]
 gi|194411665|gb|EDX27992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B171]
 gi|209914013|dbj|BAG79087.1| putative rRNA methylase [Escherichia coli SE11]
 gi|218353713|emb|CAU99984.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           55989]
 gi|218362614|emb|CAR00240.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           IAI1]
 gi|257761233|dbj|BAI32730.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           O103:H2 str. 12009]
 gi|291321733|gb|EFE61164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B088]
 gi|300414524|gb|EFJ97834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 115-1]
 gi|300421704|gb|EFK05015.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 182-1]
 gi|300524674|gb|EFK45743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 119-7]
 gi|300532393|gb|EFK53455.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 107-1]
 gi|300847978|gb|EFK75738.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 78-1]
 gi|306905482|gb|EFN36017.1| sun protein [Escherichia coli W]
 gi|308121614|gb|EFO58876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 145-7]
 gi|315062580|gb|ADT76907.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli W]
 gi|323162967|gb|EFZ48802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E128010]
 gi|323182767|gb|EFZ68168.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           1357]
 gi|323376833|gb|ADX49101.1| sun protein [Escherichia coli KO11]
 gi|323944291|gb|EGB40367.1| ribosomal RNA small methyltransferase B [Escherichia coli H120]
 gi|324017855|gb|EGB87074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 117-3]
 gi|324116322|gb|EGC10242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E1167]
 gi|331062180|gb|EGI34100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA271]
 gi|331072529|gb|EGI43854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H591]
 gi|332104195|gb|EGJ07541.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
           [Shigella sp. D9]
          Length = 429

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|293412707|ref|ZP_06655375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B354]
 gi|301018854|ref|ZP_07183093.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 69-1]
 gi|291468354|gb|EFF10847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B354]
 gi|300399511|gb|EFJ83049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 69-1]
          Length = 429

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMSWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|323173925|gb|EFZ59553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           LT-68]
          Length = 429

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|218691575|ref|YP_002399787.1| 16S rRNA methyltransferase B [Escherichia coli ED1a]
 gi|254766857|sp|B7N0S9|RSMB_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|218429139|emb|CAR09947.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           ED1a]
          Length = 429

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 213/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L    S +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3915867|sp|P94464|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 447

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 207/463 (44%), Gaps = 39/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R ++   L  + + +     LL      +    LS +++ L+  +V  TL+  
Sbjct: 1   MKK-TSVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQNRGLLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  + QLLR+S+ Q+ YL+ + D A +  AVE AK  + ++ 
Sbjct: 57  IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN +LR + RE +     I       A  +  PEW  +   + YG E    I    
Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIH 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P    L V       A  L+                  +K L  +I     F  G   
Sbjct: 175 LIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGEVS 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  +     ++ +VLD CAAPGGK+A +   + +   VT+LD+ K +++ ++ 
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             DRL L       MDA         + FD +LVDAPCS  G IRR PD+ +T+  DD  
Sbjct: 295 AADRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSA 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q  +L +    VK GG +V+S C++D+ +++EV+   ++  P      P  S   
Sbjct: 355 RLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDF---EPDLSLEK 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  +       +G ++I P           G DGFF  ++R+ 
Sbjct: 412 RLPEKVRPFVRDGRLQILPHYF--------GTDGFFICSMRKK 446


>gi|293416707|ref|ZP_06659344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B185]
 gi|291431283|gb|EFF04268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           B185]
          Length = 429

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       + W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDNWLALLDEAGMKGFPHTDYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|323974759|gb|EGB69872.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TW10509]
          Length = 456

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 211/457 (46%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 28  MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 82

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 83  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 141

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ E            + P W  +RL+  Y ++    I  +    P+
Sbjct: 142 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIIEANNQRPPM 201

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       ++W   L+   +                P  +  LPGF EG   VQDAS
Sbjct: 202 WLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDAS 261

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 262 AQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 321

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 322 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 380

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +K GG ++++ CS+  +++   ++  L+ +                 ++ 
Sbjct: 381 SEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKAFLQRTADA--------------ELC 426

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +PE          ++    +   DGFF   L + 
Sbjct: 427 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 456


>gi|320087854|emb|CBY97617.1| Ribosomal RNA small subunit methyltransferase B rRNA
           (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
           methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 429

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 208/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +          + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVELVVEQGQSLSNVFP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + ++  L+ +P                ++ 
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                EG                   DGFF   L + 
Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429


>gi|331654881|ref|ZP_08355880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M718]
 gi|331046896|gb|EGI18974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M718]
          Length = 429

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
           pacificum DSM 12653]
          Length = 443

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 104/460 (22%), Positives = 195/460 (42%), Gaps = 41/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR ++  +L  V+ K+  +         +   + +   D   V+ +V   +     +D
Sbjct: 1   MNARELAYRILYDVVVKKAYINISFAKHLRNDEVKEV---DAAFVKELVYGVIERKYTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L F +  S   K      LL + + Q+LY+D V DYA ++  VE AK+    +  +  
Sbjct: 58  FILSFFIKKSADTKA---LLLLEMGLYQLLYMDKVPDYAAINETVEIAKKFLSKKGAS-F 113

Query: 124 VNSILRRV--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N++LR            +K      +      P+W  ER    +  ++   +  +    
Sbjct: 114 LNAVLRSYLREKEKVKFPDKQNFPYYLKVTYSYPDWIIERFLKNFDADKAEKLLASLNEK 173

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQD 227
             I   V       E    KL    +           L    ++  S P + +G+   QD
Sbjct: 174 PEISYRVNTLKISAEELQEKLKREDISYKKGYYLEEALYIDLKNPESHPIYKDGLIHPQD 233

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +  ++        +LD+CAAPGGKT  +   + +  +V A D+   RL+ +  N  
Sbjct: 234 EASMLVSRILSPQKGERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCR 293

Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSA 341
           RL +        DA           D VL D PC+  G IR+ PD+     D +++    
Sbjct: 294 RLGVTNVKTEVFDATFVNESYLEKADRVLADVPCTGIGIIRKKPDIKLKSYDKEELRGLI 353

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L     +VK GG++V+S C++ +++++EV+++ L+         P + +    +
Sbjct: 354 ERQYRILKSSSLYVKKGGVLVYSTCTIGREENQEVIERFLKEHKNF---EPADISEDLPL 410

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ +  S  G+I+ TP        +   +DGFF   L+R+
Sbjct: 411 NLKVKTSDLGYIQTTP--------LEHKIDGFFIAKLKRI 442


>gi|237728623|ref|ZP_04559104.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
 gi|226909245|gb|EEH95163.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
          Length = 439

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 212/457 (46%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R +++  +  V+ K  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 11  MKKHLNLRSMTAQAVEQVVEKGQSLSNVLPAM-----QQKVADKDKALLQELCFGVLRTL 65

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++  ++   +  K+ ++  L+ V   Q+L+  +  +A +   VE A   K  +  
Sbjct: 66  SQLEWMIQQLMERPMTGKQRTVHYLIMVGFYQLLHTRIPAHAALAETVEGAVVIKRPQ-L 124

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGK-ERVLAISDACISPL 176
             L+N +LR+  R + ELL   A      + P W  +R+++ Y +    +  ++    P+
Sbjct: 125 KGLINGVLRQFQRRQDELLAEFAQSDLRFLHPSWLVKRIKSAYPQQWEAILEANNQRPPM 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDAS 229
           ++ +            L      TG              P  + +LPGF EG   VQDAS
Sbjct: 185 WLRVNRNHHTRDAWLDLLTEAGLTGFPHPDYPDAVRLETPAPVHALPGFDEGWVTVQDAS 244

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V      +   +LDLC APGGKT  ++       V A+DV ++RL ++  NL RL 
Sbjct: 245 AQGCVNYLLPEDGEQILDLCCAPGGKTTHILEVAPLANVMAVDVDEKRLSRVYDNLKRLG 304

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 305 MKAT-VKQGDGRYPQQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 363

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L    S +K GG +V++ CS+  +++++ +   L  +P  V              ++
Sbjct: 364 AEILNATWSHLKSGGTLVYATCSILPEENQQQIAAFLARTPDAV--------------LS 409

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +PE      P    +    +   DGFF   L + 
Sbjct: 410 ETGTPEK-----PG--RQNLPGAEDGDGFFYAKLIKK 439


>gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586]
 gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586]
          Length = 431

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 210/459 (45%), Gaps = 44/459 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++  L  V+ +  SL+ LL     D     +S+RD+ L++ I    LR L
Sbjct: 1   MKSTYNLRSIAATTLLQVVEQGQSLSQLLPALQRD-----ISERDRGLLQEICFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P++D  L  ++   L  K+  L  LL V + Q+++  +  +A +   V  A   K  +  
Sbjct: 56  PQLDWYLRQLMAKPLTGKQKVLHYLLMVGLYQLIHTRIPPHAALAETVNGAVALKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +    +R      + LQ        P+W  +RL+  Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQREQEALQQRLQNNPARYSHPDWLLQRLKKAYPGQWEQIIDANNQHPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       E +   L    +                P ++  LPGF +G   VQDAS
Sbjct: 175 WLRVNRRHHTREAYLALLQEKGIEAHPHAHYPDAIRLSTPCAVNVLPGFEKGFVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      ++  +LDLCAAPGGKT  ++     A+V A+DV ++RL+++R NL RL+
Sbjct: 235 AQGCIHWLSPQDHEDILDLCAAPGGKTTHILEAAPHARVLAVDVDEQRLKRVRENLQRLN 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+AE +   D      +C  K FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHAE-VKCGDGRTPTQWCGDKCFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             +L      +K GG +V++ CS+  +++ + +   L+     + +     A        
Sbjct: 354 NTILEAIWPRLKNGGTLVYATCSVLPEENCQQIADFLQRHADAMLVDTGTPASP------ 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                   I++ P         +   DGFF   L +  Q
Sbjct: 408 -------GIQMLP--------AAEDGDGFFYAKLVKSGQ 431


>gi|16131168|ref|NP_417747.1| 16S rRNA m(5)C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110722|ref|AP_004502.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. W3110]
 gi|157162762|ref|YP_001460080.1| 16S rRNA methyltransferase B [Escherichia coli HS]
 gi|170018476|ref|YP_001723430.1| 16S rRNA methyltransferase B [Escherichia coli ATCC 8739]
 gi|170082809|ref|YP_001732129.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188493203|ref|ZP_03000473.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           53638]
 gi|194439994|ref|ZP_03072052.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           101-1]
 gi|238902379|ref|YP_002928175.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           BW2952]
 gi|253771888|ref|YP_003034719.1| 16S rRNA methyltransferase B [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254038449|ref|ZP_04872505.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
           1_1_43]
 gi|254163216|ref|YP_003046324.1| 16S rRNA methyltransferase B [Escherichia coli B str. REL606]
 gi|256025984|ref|ZP_05439849.1| 16S rRNA methyltransferase B [Escherichia sp. 4_1_40B]
 gi|300932181|ref|ZP_07147461.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 187-1]
 gi|300946510|ref|ZP_07160776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 116-1]
 gi|300955326|ref|ZP_07167708.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 175-1]
 gi|301021178|ref|ZP_07185214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 196-1]
 gi|301643892|ref|ZP_07243922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 146-1]
 gi|307139971|ref|ZP_07499327.1| 16S rRNA methyltransferase B [Escherichia coli H736]
 gi|312972450|ref|ZP_07786624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           1827-70]
 gi|331643984|ref|ZP_08345113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H736]
 gi|1169715|sp|P36929|RSMB_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493247|sp|B1X6E1|RSMB_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493248|sp|A8A593|RSMB_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493250|sp|B1IQ11|RSMB_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|259495485|sp|C4ZUE3|RSMB_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|49259108|pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
           S- Adenosylmethionine At 2.1 A Resolution
 gi|49259109|pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
           A Resolution
 gi|1772512|emb|CAA71359.1| sun [Escherichia coli str. K-12 substr. MG1655]
 gi|2367212|gb|AAC76314.1| 16S rRNA m(5)C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676753|dbj|BAE78003.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K12 substr. W3110]
 gi|157068442|gb|ABV07697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           HS]
 gi|169753404|gb|ACA76103.1| sun protein [Escherichia coli ATCC 8739]
 gi|169890644|gb|ACB04351.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188488402|gb|EDU63505.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           53638]
 gi|194421046|gb|EDX37075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           101-1]
 gi|226838955|gb|EEH70978.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
           1_1_43]
 gi|238859734|gb|ACR61732.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           BW2952]
 gi|242378815|emb|CAQ33607.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322932|gb|ACT27534.1| sun protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975117|gb|ACT40788.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli B
           str. REL606]
 gi|253979273|gb|ACT44943.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           BL21(DE3)]
 gi|260447693|gb|ACX38115.1| sun protein [Escherichia coli DH1]
 gi|299881625|gb|EFI89836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 196-1]
 gi|300317770|gb|EFJ67554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 175-1]
 gi|300453816|gb|EFK17436.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 116-1]
 gi|300460065|gb|EFK23558.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 187-1]
 gi|301077735|gb|EFK92541.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 146-1]
 gi|309703700|emb|CBJ03041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           ETEC H10407]
 gi|310334827|gb|EFQ01032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           1827-70]
 gi|315137864|dbj|BAJ45023.1| 16S rRNA methyltransferase B [Escherichia coli DH1]
 gi|323934513|gb|EGB30921.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520]
 gi|323939290|gb|EGB35502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           E482]
 gi|323959561|gb|EGB55214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H489]
 gi|323970092|gb|EGB65366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA007]
 gi|331036278|gb|EGI08504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H736]
 gi|332345236|gb|AEE58570.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           UMNK88]
          Length = 429

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-44]
 gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-44]
          Length = 431

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 196/448 (43%), Gaps = 40/448 (8%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
            V +       LL+     S    + ++D  L+  IV  T++    +D  L   L   + 
Sbjct: 2   QVEKSGAYSNLLLNNLIEKS---EIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE 58

Query: 77  RKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE- 134
                ++ LLR+S+ Q++YLD V + AV+  AVE AKR + ++  A +VN +LR + RE 
Sbjct: 59  ---AWVKVLLRLSLYQMIYLDRVPERAVIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREG 114

Query: 135 ------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
                   + ++R+A     PEW  +   + YG E    + +  + P      V  D  T
Sbjct: 115 VPSVEEIQDPVKRLAVAMSHPEWLVQEWVSAYGLETAQKMCEVNMLPPVSAARVNVDKAT 174

Query: 189 WAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
               +         A         ++    ++     F +G   +QD S+ +  +     
Sbjct: 175 VEEAISLLENEGIQAKYGDLSEDAIQIEKGNVAHTEAFQKGFLSIQDESSMLVARALAPA 234

Query: 241 NNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               VLD CAAPGGKT  +        +V +LD+   ++  ++    RL L   +   +D
Sbjct: 235 EGDKVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHPHKVRLIQQQAKRLGLENVETKALD 294

Query: 298 AFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           A     +   + FD +LVDAPCS  G IRR PD+   ++  D  + +  Q  +L +    
Sbjct: 295 ARKVEEHFANESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPL 354

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  +       EG ++
Sbjct: 355 LKTGGRLVYSTCTIEKIENEQVIEQFLQEHP---EFEWDTTMKGRMPEKLHPYINEGQVQ 411

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           I P             DGF+   LR+ +
Sbjct: 412 ILPHYFA--------TDGFYIACLRKKV 431


>gi|315617091|gb|EFU97701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           3431]
          Length = 429

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 213/457 (46%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPL 176
             L+N +LR+  R++ E            + P W  +RL+  Y K+   +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPKQWQSIVEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       ++W   L+   +                P  + +LPGF +G   VQDAS
Sbjct: 175 WLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++ 
Sbjct: 354 SEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELC 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +PE          ++    +   DGFF   L + 
Sbjct: 400 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
           MJ11]
 gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
           MJ11]
          Length = 451

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 115/452 (25%), Positives = 200/452 (44%), Gaps = 43/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ ++  V+ +  SL+  L       A   +  RDQ L++ I    LRFLPR++
Sbjct: 26  MNVRAAAAKVIYQVVDQGHSLSSALPK-----AQSEIKPRDQALLQEICYGVLRFLPRLE 80

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +V   ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  +    L+
Sbjct: 81  SVAQSLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKNLKGPK-LRGLI 139

Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R + E     +   +G    P W  + L+  Y  +   +  ++   +P+++ 
Sbjct: 140 NAVLRNYQRSQEELDAKSVSHDSGKYGHPGWLLKMLQQAYPEQWETIVEANNSKAPMWLR 199

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +            L +    + +LPGF +G   VQDA+A +
Sbjct: 200 VNSQHHTRDEYIALLEKEEISVTPHSQATDALLLDKARDVYTLPGFEQGWVSVQDAAAQL 259

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             +     N   +LD CAAPGGKTA          V A+D  + RL+++  NL+RL+L A
Sbjct: 260 SAEYLQPQNGELILDCCAAPGGKTAHILERTQDTNVVAIDCDETRLKRVYENLERLNLKA 319

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q ++ 
Sbjct: 320 QVICGDARHPEEWWKGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIKALAELQSEIF 379

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+   ++ + V+  L  +     +   +              
Sbjct: 380 DAMWLQLKSGGTMVYATCSITPLENCDQVKAFLARTSDATLIDNTDPEKP---------- 429

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L++
Sbjct: 430 ---GRQILPG--------EENMDGFYYAVLQK 450


>gi|194435072|ref|ZP_03067310.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 1012]
 gi|194416679|gb|EDX32810.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 1012]
 gi|320182714|gb|EFW57600.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii
           ATCC 9905]
 gi|332086286|gb|EGI91442.1| ribosomal RNA small subunit methyltransferase B [Shigella
           dysenteriae 155-74]
          Length = 429

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R + E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +   +   ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTQHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYANLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429


>gi|320187010|gb|EFW61722.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           CDC 796-83]
          Length = 429

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IR HPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRHHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|15803816|ref|NP_289850.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 EDL933]
 gi|168752263|ref|ZP_02777285.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758516|ref|ZP_02783523.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764971|ref|ZP_02789978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769150|ref|ZP_02794157.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777854|ref|ZP_02802861.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783855|ref|ZP_02808862.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786178|ref|ZP_02811185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC869]
 gi|168802718|ref|ZP_02827725.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC508]
 gi|195939836|ref|ZP_03085218.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4024]
 gi|208808123|ref|ZP_03250460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812777|ref|ZP_03254106.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820338|ref|ZP_03260658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396232|ref|YP_002272745.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4115]
 gi|217326360|ref|ZP_03442444.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795225|ref|YP_003080062.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224593|ref|ZP_05938874.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254513|ref|ZP_05947046.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|46396973|sp|Q8XEE5|RSMB_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493246|sp|B5YT08|RSMB_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|12517918|gb|AAG58410.1|AE005556_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|187767005|gb|EDU30849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013841|gb|EDU51963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998877|gb|EDU67863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354681|gb|EDU73100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361764|gb|EDU80183.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365121|gb|EDU83537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373894|gb|EDU92310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC869]
 gi|189375353|gb|EDU93769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC508]
 gi|208727924|gb|EDZ77525.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734054|gb|EDZ82741.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740461|gb|EDZ88143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157632|gb|ACI35065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757340|gb|ACI76982.1| RNA methyltransferase [Escherichia coli]
 gi|209757342|gb|ACI76983.1| RNA methyltransferase [Escherichia coli]
 gi|209757346|gb|ACI76985.1| RNA methyltransferase [Escherichia coli]
 gi|217322581|gb|EEC31005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594625|gb|ACT73986.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|320191677|gb|EFW66327.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320639593|gb|EFX09187.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101]
 gi|326342537|gb|EGD66311.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. 1044]
 gi|326344524|gb|EGD68273.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           O157:H7 str. 1125]
          Length = 429

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++  +   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKSMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       +TW   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|83945706|ref|ZP_00958051.1| rRNA methyltransferase RsmB [Oceanicaulis alexandrii HTCC2633]
 gi|83850907|gb|EAP88767.1| rRNA methyltransferase RsmB [Oceanicaulis alexandrii HTCC2633]
          Length = 450

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 151/441 (34%), Positives = 235/441 (53%), Gaps = 14/441 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
              +  R V+   +  V+ K + L   L    G   ++ +  RD+   RAI +  +R   
Sbjct: 21  TKNLMPRAVALGAVEGVLAKAVPLDGALA---GRPEWKRMEPRDRAFARAIASAVIRRPI 77

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +DA L  VL   LP ++     +LR   A+ L LD   +A VD  V    +D+    F 
Sbjct: 78  ALDAALMQVLDKPLPDEEVRAHLILRCGAAERLILDTPAHAAVDAWVSLMAQDRHTARFK 137

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            L N++LRRV  +  +       +  +P+W  ER    YG+    AI+ A   P  +DLT
Sbjct: 138 NLANAVLRRVVDQGKDAFLDSDPLEDLPDWLAERWVETYGEPTARAIAIARSVPPTLDLT 197

Query: 182 VKF--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            K   D +++A ++ A +L TG IR +    ++  LPGF  G WWVQDA+A++P +L G 
Sbjct: 198 AKPGFDAQSFAEEIGASVLETGTIR-RPDIGAVDGLPGFENGDWWVQDAAAALPAKLLGV 256

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
               +V DLCAAPGGKT QL  +GA V A+D S +RL++L  NL+R  L AE +   D  
Sbjct: 257 KAGETVADLCAAPGGKTLQLAATGASVIAVDASPKRLKRLEDNLERTKLKAEIV-AADVA 315

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
           D+   +  DA+L+DAPCS+TGT+RR PD  W +   DI   A  QR+LL    + +KPGG
Sbjct: 316 DWTAPEPLDAILLDAPCSATGTLRRRPDAAWAKQPGDIANLADIQRRLLDASFNQLKPGG 375

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL++++ E+ ++  L+ +P    L P+ +       +  A++P+G +R  PD+
Sbjct: 376 RLVYCTCSLEREEGEDQIEAFLKRTP-DARLDPVTADELPG--LKAAITPDGAVRTRPDL 432

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
             +      G+DGF+   + +
Sbjct: 433 WSE----RGGLDGFYIARIVK 449


>gi|291619144|ref|YP_003521886.1| RsmB [Pantoea ananatis LMG 20103]
 gi|291154174|gb|ADD78758.1| RsmB [Pantoea ananatis LMG 20103]
          Length = 433

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 216/461 (46%), Gaps = 46/461 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R +S+ L+  V+ K  SL   L      +A + LS +D  LV+ I    LR L
Sbjct: 1   MTKSTNLRSLSAQLIERVVDKGESLNTALP-----AAQKKLSDKDAALVQEICFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++A++  ++   L  K+ +L  L+ V + Q+LY  V  +A +   V  A+  K   + 
Sbjct: 56  PQLEALIGKLMERPLTGKQRTLHFLIMVGLYQLLYTRVPAHAALAETVAGAEVLKR-ANL 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++      +Q      + P W   RL+  +  E+   I +A      
Sbjct: 115 KGLINGVLRQFQRQQEALLASIQDGPQRHLHPGWLLNRLQQAWP-EQWQQIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W  +L A        +          P  +  LPGF +G + VQD 
Sbjct: 174 MWLRVNRQHHSRDSWLARLTAEEKSAAVAQDVPEALRLTAPAPVTLLPGFEQGWFTVQDL 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA     L    N   +LDLCAAPGGKT     I   A+V A+DV  +RL+++  NL RL
Sbjct: 234 SAQRCALLLEPKNGEQILDLCAAPGGKTTHILEIAPEAQVLAVDVDAQRLKRVNENLTRL 293

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + AE + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMTAE-VKQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAAL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR++L      +KPGG ++++ CS+   +++  + + +       E V L+ A       
Sbjct: 353 QREILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERH-ADAEAVSLSGA------- 404

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                P    ++ P         + G DGFF   L +   P
Sbjct: 405 -----PLNGWQVFP--------EAEGGDGFFYAKLVKRTGP 432


>gi|320666401|gb|EFX33384.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61]
          Length = 429

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++ ++  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQVVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++  +   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKSMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYGNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|187732355|ref|YP_001881972.1| 16S rRNA methyltransferase B [Shigella boydii CDC 3083-94]
 gi|224493269|sp|B2U2Q6|RSMB_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|187429347|gb|ACD08621.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
           CDC 3083-94]
          Length = 429

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 210/458 (45%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N+  +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNSEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IR HPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRHHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +    EL    +        
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRT-ADAELCETGAPEQPG--- 408

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                            ++    +   DGFF   L + 
Sbjct: 409 -----------------KQNLPGAEEGDGFFYAKLIKK 429


>gi|281602657|gb|ADA75641.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           2002017]
          Length = 436

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 8   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 62

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 63  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 121

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R + E            + P W  +RL+  Y  E+  +I++A      
Sbjct: 122 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 180

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 181 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 240

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 241 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKRL 300

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 301 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 359

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 360 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 405

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 406 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 436


>gi|323966250|gb|EGB61685.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           M863]
 gi|327250937|gb|EGE62630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           STEC_7v]
          Length = 429

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/457 (25%), Positives = 212/457 (46%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ E            + P W  +RL+  Y ++    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       ++W   L+   +                P  +  LPGF EG   VQDAS
Sbjct: 175 WLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L    S +K GG +V++ CS+  +++   ++  L+ +                 ++ 
Sbjct: 354 SEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELC 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +PE          ++    +   DGFF   L + 
Sbjct: 400 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|110807136|ref|YP_690656.1| 16S rRNA methyltransferase B [Shigella flexneri 5 str. 8401]
 gi|110616684|gb|ABF05351.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 436

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 8   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 62

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 63  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 121

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R + E            + P W  +RL+  Y  E+  +I++A      
Sbjct: 122 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 180

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 181 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 240

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 241 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 300

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 301 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 359

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 360 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 405

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 406 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 436


>gi|154497982|ref|ZP_02036360.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC
           29799]
 gi|150272972|gb|EDN00129.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC
           29799]
          Length = 447

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 99/457 (21%), Positives = 180/457 (39%), Gaps = 42/457 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   LS   R+       L     +     L  RD  L   +    L+    +D  
Sbjct: 8   ARETALLALSACERQGAWSDGFLKKTLRE---AGLDSRDAALATRLCFGVLQNRLLLDFY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +     +   + +  ++  LR+ V Q+ ++  +   A V+ +VE  K+  +N   A +VN
Sbjct: 65  IGKFSTTRPEKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHCKNPRAAGMVN 124

Query: 126 SILRRVSREKIE--------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +LR VSR              + ++     P W         G E   A+ +A      
Sbjct: 125 GVLRNVSRNIDRLPVIESGSREEYLSIRYSHPLWLVREFTALLGSEEAEALLEADNGQPP 184

Query: 178 IDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           I   +     T    L  +                 +     ++  L  F EG++++QD 
Sbjct: 185 ITAQINTCRATMEQTLERLAEAGVEAQPHPWLADCLVLSGTGNLEHLTAFREGLFYIQDP 244

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           +A + V++      + VLD CAAPGGKT      +    ++ + D+   + + ++   +R
Sbjct: 245 AARLAVEVADPKPGMKVLDACAAPGGKTFASAIRMGGEGEIQSCDIHAHKEKLIQAGAER 304

Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L         MD   + P  +  FD V+ D PCS  G IR+ PD+ + +D + +      
Sbjct: 305 LGFNCIKTAVMDGKKHRPAFENAFDVVIADVPCSGLGIIRKKPDIRY-KDPEPLEGLPAV 363

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L    ++VKPGG+++++ C+L ++++ +VV+  L  +          +     +  
Sbjct: 364 QSAILDNVATYVKPGGVLLYATCTLLERENGDVVRGFLDRNKDF-------TLEKFQLPE 416

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  G     P           G DGFF   LRR
Sbjct: 417 PLGRADNGMFTFWPQ--------RHGTDGFFIAKLRR 445


>gi|260588062|ref|ZP_05853975.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
           DSM 20583]
 gi|260541589|gb|EEX22158.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
           DSM 20583]
          Length = 454

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 214/466 (45%), Gaps = 38/466 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M + +N R +   +L  + ++      ++        ++ L ++++  +  +   TL + 
Sbjct: 1   MVNKVNLRELVLGILLEINKEGQHSHLVIRSTLE--KYQYLEKQERAFLTRVCEGTLEYK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            R+D +LD      + + K  ++++LR SV Q+LY+D V D AV D AV+ A++ K   +
Sbjct: 59  LRLDYILDQYSSVPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARK-KGFYN 117

Query: 120 FAKLVNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDA 171
               VN +LR+V+RE   +           ++ +  +P+W  E+    YG E+   + +A
Sbjct: 118 LTGFVNGVLRKVAREYGSIHFPEKDQPVEYLSVLYSMPKWLVEKFLGEYGFEKTEKMLEA 177

Query: 172 CISPLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGV 222
            ++     + ++  +      L+++                   +  + + +L  F  G 
Sbjct: 178 FLTEKPTTIRIRQHLVDKGAVLDSLKRQKVTVEPAPYVENAYYIKDYDYLPALEAFRMGN 237

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
             VQD S+ +  ++        V+DLCAAPGGKT  +        ++ A D+S+ + + +
Sbjct: 238 IQVQDVSSMLVGEVADPKEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLI 297

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           R N  R +     + E DA     +  +  D ++ D PCS  G I +  D+ +    + I
Sbjct: 298 RENAIRQNFLNVVVTEKDATQLDSESFEKADILIADVPCSGLGVIGKKTDIKYNITQNGI 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    QRK+L Q  ++VKPGG +++S C+++K+++ E V+  + + P  +E +      
Sbjct: 358 AELVNLQRKILEQASTYVKPGGTLIYSTCTINKEENIENVRWFVENYPYELESID----D 413

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +   ++    + EG++++               DGFF   L+R  +
Sbjct: 414 YLCEELRSDTTKEGYLQLL--------SGVHDCDGFFIARLKRKTE 451


>gi|224493306|sp|Q0T014|RSMB_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
          Length = 429

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R + E            + P W  +RL+  Y  E+  +I++A      
Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429


>gi|30064610|ref|NP_838781.1| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 2457T]
 gi|56480310|ref|NP_709076.2| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 301]
 gi|46396790|sp|Q7UBD3|RSMB_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|30042869|gb|AAP18592.1| hypothetical protein S3545 [Shigella flexneri 2a str. 2457T]
 gi|56383861|gb|AAN44783.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|313648789|gb|EFS13229.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           2a str. 2457T]
 gi|332749603|gb|EGJ80020.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-671]
 gi|332749746|gb|EGJ80161.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           4343-70]
 gi|332766528|gb|EGJ96735.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           2930-71]
 gi|332998314|gb|EGK17914.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-218]
 gi|333012367|gb|EGK31748.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-304]
          Length = 429

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R + E            + P W  +RL+  Y  E+  +I++A      
Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429


>gi|170684100|ref|YP_001745551.1| 16S rRNA methyltransferase B [Escherichia coli SMS-3-5]
 gi|224493251|sp|B1LGP5|RSMB_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|170521818|gb|ACB19996.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           SMS-3-5]
          Length = 429

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       + W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDRWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|320199476|gb|EFW74066.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
           EC4100B]
          Length = 429

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LP F +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPSFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|327395473|dbj|BAK12895.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
           ananatis AJ13355]
          Length = 433

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 216/461 (46%), Gaps = 46/461 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R +S+ L+  V+ K  SL   L      +A + LS +D  LV+ I    LR L
Sbjct: 1   MTKSTNLRSLSAQLIERVVDKGESLNTALP-----AAQKKLSDKDAALVQEICFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++A++  ++   L  K+ +L  L+ V + Q+LY  V  +A +   V  A+  K   + 
Sbjct: 56  PQLEALIGKLMERPLTGKQRTLHFLIMVGLYQLLYTRVPAHAALAETVAGAEVLKR-ANL 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++      +Q      + P W   RL+  +  E+   I +A      
Sbjct: 115 KGLINGVLRQFQRQQEALLASIQDGPQRHLHPGWLLNRLQQAWP-EQWQQIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W  +L A        +          P  +  LPGF +G + VQD 
Sbjct: 174 MWLRVNRQHHSRDSWLARLIAEEKSAAVAQDVPEALRLTAPAPVTLLPGFEQGWFTVQDL 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA     L    N   +LDLCAAPGGKT     I   A+V A+DV  +RL+++  NL RL
Sbjct: 234 SAQRCALLLEPKNGEQILDLCAAPGGKTTHILEIAPEAQVLAVDVDAQRLKRVNENLTRL 293

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + AE + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMTAE-VKQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAAL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR++L      +KPGG ++++ CS+   +++  + + +       E V L+ A       
Sbjct: 353 QREILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERH-ADAEAVSLSGA------- 404

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                P    ++ P         + G DGFF   L +   P
Sbjct: 405 -----PLNGWQVFP--------EAEGGDGFFYAKLVKRTGP 432


>gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568]
 gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568]
          Length = 429

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 219/457 (47%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +  V+ +  SL+ +L      S  + +S +D+ L++ +   TLR L
Sbjct: 1   MKNNYNLRSIAAIAIGQVLDQGQSLSTVLP-----SLQKTISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+ +L  LL V + Q+LY  +  +AV+   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMAKPMTGKQRTLHYLLMVGLYQLLYTRIPAHAVLAETVEGAVALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ ELLQR A      + P W  +R++  Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEELLQRAANNDSRYLHPSWLLKRIQQAYPAQWEQIIDANNQKPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    E +   +    +                P ++  LPGFA+G   VQDAS
Sbjct: 175 WLRVNRLHHTREDYLQLMEQAGIAAEPHAEYRDAVRLLAPCAVTDLPGFADGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    +   +LDLCAAPGGKT  ++     A V A+D+ ++RL++++ NL RL 
Sbjct: 235 AQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQRLR 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+AE + + D      +C  K FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHAE-VKQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+   ++ E V   L+       LV   +         
Sbjct: 354 AEIIEAIWPHLKSGGVMVYATCSILPAENAEQVSAFLQRH-ADARLVETGNQQQPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                            +        DGFF   L ++
Sbjct: 409 ----------------RQNLPHPEDGDGFFYAKLIKM 429


>gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Vibrio fischeri
           ES114]
 gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Vibrio fischeri
           ES114]
          Length = 426

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 200/453 (44%), Gaps = 45/453 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ ++  V+ +  SL+  L       A   +  RDQ L++ I    LRFLPR++
Sbjct: 1   MNVRAAAAKVIYQVVDQGHSLSSALPK-----AQSEIKPRDQALLQEICYGVLRFLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +V   ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  +    L+
Sbjct: 56  SVAQSLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKNLKGPK-LRGLI 114

Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R + E     +   +G    P W  + L+  Y  E+   I +A  S   + L
Sbjct: 115 NAVLRNYQRSQEELDAKSVSHDSGKYGHPGWLLKMLQQAYP-EQWENIVEANNSKAPMWL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231
            V       + +   L    +            L +    + +LPGF +G   VQDA+A 
Sbjct: 174 RVNSQHHTRDEYIALLEKEEISVTPHSQATDALLLDKARDVYTLPGFEQGWVSVQDAAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           +  +     N   +LD CAAPGGKTA          V A+D  + RL+++  NL+RL+L 
Sbjct: 234 LSAEYLQPQNGELILDCCAAPGGKTAHILERTQDTSVVAIDCDETRLKRVYENLERLNLK 293

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A           ++   + FD +L+DAPCS+TG IRRHPD+ W R ++DI   A  Q ++
Sbjct: 294 AQVICGDARHPEEWWKGEQFDRILLDAPCSATGVIRRHPDIKWLRRSEDIKALAELQSEI 353

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
                  +K GG +V++ CS+   ++ + V+  L  +     +   +             
Sbjct: 354 FDAMWLQLKSGGTMVYATCSITPLENCDQVKAFLARTSDATLIDNTDPEKP--------- 404

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +I P            MDGF+   L++
Sbjct: 405 ----GRQILPG--------EENMDGFYYAVLQK 425


>gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6]
 gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           CMCP6]
          Length = 426

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 209/454 (46%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ +  SL+  L       A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYQVVDRGNSLSTALPE-----AQQSIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SIAGKLMDKPLKGKQRVFHHLILVGLYQLGHMRIPAHAAVGETVEGAQALKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   RE+       +   AG  + P W  + L++ Y  + + +  ++   +P+++ 
Sbjct: 115 NAVLRNYQREQQALDEFSVSHNAGKYVHPSWLLKILQDAYPEQWQTIVEANNNKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +     D + +   L    + +              P  + SLPGF +G   VQDA+A +
Sbjct: 175 VNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
                   +   +LD CAAPGGKTA     VS  +V ALD  ++RL+++  NL RL+L A
Sbjct: 235 SFNYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +   +   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q ++ 
Sbjct: 295 KVICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+   ++ E V+  L  +                  +  +  
Sbjct: 355 DAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTSAA--------------QLVGSER 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +I P            MDGF+   L +  
Sbjct: 401 ENPGRQIIPG--------EEDMDGFYYAVLVKQA 426


>gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           metschnikovii CIP 69.14]
 gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           metschnikovii CIP 69.14]
          Length = 426

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 204/454 (44%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGHSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++ + L  KK     L+ V + Q+ Y+ +  +A V   VE A +       + L+
Sbjct: 56  SIAGQLMDNPLKGKKRVFHHLILVGLYQLSYMRIPSHAAVAETVE-ATKTLRGPSLSGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++       +   AG+   P W  + L+  Y ++    I      +P+++ 
Sbjct: 115 NAVLRSYLRDQEALDAFAVSHNAGLYAHPSWLLKLLQEAYPQQWQTIIEANNSKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       E +   L+   +                P  +  LPGF  G   VQDA+A +
Sbjct: 175 VNRQHHSREAYLALLDNEQIEYTVHPQAADAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA         +V A+D    RLE++  NL+RL L A
Sbjct: 235 AIDYLQPQDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDAARLERVYDNLERLQLRA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q ++L
Sbjct: 295 DVICGDARYPEEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAELQSEIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++ + ++  L  +P   +L+  +              
Sbjct: 355 DAMWKQLKIGGTLVYATCSITPQENSQQIKAFLARTP-KAQLIDSDPEQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +I P            MDGF+   LR+  
Sbjct: 404 ---GRQILPG--------EQDMDGFYYAVLRKQA 426


>gi|26249873|ref|NP_755913.1| 16S rRNA methyltransferase B [Escherichia coli CFT073]
 gi|227883420|ref|ZP_04001225.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
 gi|300979825|ref|ZP_07174727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 45-1]
 gi|301046059|ref|ZP_07193238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 185-1]
 gi|46396925|sp|Q8FD12|RSMB_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|26110301|gb|AAN82487.1|AE016767_247 SUN protein [Escherichia coli CFT073]
 gi|227839564|gb|EEJ50030.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
 gi|300301944|gb|EFJ58329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 185-1]
 gi|300409431|gb|EFJ92969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 45-1]
 gi|307555376|gb|ADN48151.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972]
 gi|315292336|gb|EFU51688.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 153-1]
          Length = 429

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            + D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQSDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  + +LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L    S +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|227115242|ref|ZP_03828898.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 429

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++ ++  V+ +  SL+ LL +       R +S +D+ L++ +    LR L
Sbjct: 1   MKSSYNLRSIAAKVVGQVLDQGQSLSALLPVY-----QREVSDKDRALLQELCFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+ +L  L+ V + Q+ Y  +  +A +   VE     K  +  
Sbjct: 56  PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGTVSLKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPL 176
             L+N +    +R   E I+     +   + P W   R+E  Y      +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQEELIQREATHSSHYLHPSWLLTRIERAYPHHWQNIVEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    E + + L+   +                P ++  LPGF++G   VQDAS
Sbjct: 175 WLRVNRLHHTREAYLNLLDQEGIEAFPHAEYNDAIRLAAPCAVDQLPGFSQGWATVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V      +   +LDLCAAPGGKT  ++     + V A+DV + RL +++ NL RL 
Sbjct: 235 AQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLRLQ 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           ++AE + + D      +C  ++FD VL+DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 295 MHAE-VKQGDGRYPDSWCEGRVFDRVLLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L      +K GG +V++ CS+  Q++ + V   L        LV   +         
Sbjct: 354 KEILDAIWPHLKTGGTLVYATCSILPQENTQQVADFLTRH-TDATLVDTGTREMPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I++ P         + G DGFF   L +
Sbjct: 409 --------IQMLPH--------ADGGDGFFYAKLVK 428


>gi|15833408|ref|NP_312181.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. Sakai]
 gi|13363627|dbj|BAB37577.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
          Length = 429

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKNQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++  +   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKSMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       +TW   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
           ATCC 43380]
 gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
           ATCC 43380]
          Length = 429

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 215/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----NKSISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNESHYLHPSWLLARIKQAYPDQWQQILEANNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +      +         P S+  LPGF  G   VQDAS
Sbjct: 175 WLRVSRLHHSRSEYLELLKQADIEALPHDVYPDAVRLITPCSVNDLPGFDLGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVDLLSPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLK 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A D+   D     ++C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHA-DVRVGDGRTPDEWCGNQQFDRILLDAPCSATGVIRRHPDIKWLRRNSDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+      ELV   +         
Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRH-SEAELVETGTTSAPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                            +        DGFF   L +
Sbjct: 409 ----------------RQNLPHPEDGDGFFYAKLIK 428


>gi|291284647|ref|YP_003501465.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|209757338|gb|ACI76981.1| RNA methyltransferase [Escherichia coli]
 gi|209757344|gb|ACI76984.1| RNA methyltransferase [Escherichia coli]
 gi|290764520|gb|ADD58481.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|320645091|gb|EFX14107.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89]
 gi|320650402|gb|EFX18868.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687]
 gi|320661379|gb|EFX28794.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 429

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++  +   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKSMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
           ATCC 29473]
 gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
           ATCC 29473]
          Length = 429

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 113/455 (24%), Positives = 203/455 (44%), Gaps = 42/455 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ K  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDKGQSLSTVLPGL-----QKSISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE--QAKRDKENR 118
           P+++  +  ++   +  K+     L+ V + Q+LY  +  +A +   VE   A +  + +
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLLYTRIPPHAALAETVEGTVALKRPQLK 115

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPLY 177
                V    +R   + +E         + P W   R++  Y  +    I  +    P++
Sbjct: 116 GLVNGVLRQFQRQQVDLLERAANNESRYLHPSWLLARIKKAYPDKWQQIIDANNQKPPMW 175

Query: 178 IDL-TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASA 230
           + +  +      +   +    +                P ++  LPGF +G   VQDASA
Sbjct: 176 LRVSRLHHSRADYLELMKQAGIEAEPHTEYSDAVRLITPCAVNDLPGFTQGWVTVQDASA 235

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHL 288
              V L    N   +LDLCAAPGGKT  ++     + V A+D+ ++RL +++ NL RL L
Sbjct: 236 QGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDEQRLSRVKENLQRLQL 295

Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +A  +   D      +C  +LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q 
Sbjct: 296 HAT-VTVGDGRAPDKWCGNQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQS 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      +K  G++V++ CS+  +++++ +   L+  P    +     A         
Sbjct: 355 EILEAIWPKLKKDGVMVYATCSILPEENQQQIANFLQRHPEARLVETGTPAQPG------ 408

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          ++        DGFF   L +
Sbjct: 409 ---------------KQNLPHPEDGDGFFYAKLIK 428


>gi|291549490|emb|CBL25752.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           torques L2-14]
          Length = 463

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 113/477 (23%), Positives = 196/477 (41%), Gaps = 49/477 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R V   +L  +         +L      S ++ L +R++  +  +V  TL  +
Sbjct: 1   MGKQINEREVVLEILMEITENGAYSHKILGDVL--SKYQYLEKRERAFITRVVEGTLEHM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +L+ +  + + + K  ++ LLR SV Q+ Y+D V D+AV   AV+ A R K    
Sbjct: 59  IEIDYILNQISKTKVKKMKPVIRNLLRSSVYQLKYMDSVPDHAVCSEAVKLAVR-KGFSG 117

Query: 120 FAKLVNSILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACI 173
               VN +LR V R+  E+          +    +PEW     +  YG+E    ++    
Sbjct: 118 LRGYVNGVLRNVVRKMDEIEYPKEDVQRLSVKYSVPEWILSLWKKEYGEEITEKMAADFQ 177

Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWW 224
               I +    +    E    KL A                    + +  L  F EG++ 
Sbjct: 178 KEKPITIRCCMNRVTPEVLKEKLEAEGAKVEAHPYLPYAFYLSDYDYLEGLESFQEGLFA 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------------LIVSGAKVT 267
           VQD S+    +L        V+D+CAAPGGK+                         +V 
Sbjct: 238 VQDISSMFVGELADLKAGDHVIDVCAAPGGKSLHVAEKLQLADEVAARENGTEEKTGRVE 297

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRH 325
           A D+++ + + +  N+DR  L     +  DA  +        D V+ D PCS  G + + 
Sbjct: 298 ARDLTEYKTDLIWQNIDRSGLGNICAVCKDASVFDEYDKETADLVIADLPCSGLGVLGKK 357

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           PD+ +    +D+ + A  QRK+L    + VK GG +++S C+++  ++ + V   L+  P
Sbjct: 358 PDLKYRVQPEDLEELADLQRKILTCAQAIVKDGGTLLYSTCTVNPGENMDNVHWFLKEYP 417

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              EL  +     K  ++   +  +G I+  P +           DGFF   L++  
Sbjct: 418 -QFELDDITENLCK--ELRSDVIEKGCIQFFPGV--------HDCDGFFIARLKKKA 463


>gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola]
 gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           Angola]
          Length = 435

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 207/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 7   MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 61

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 62  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 120

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++E            + P W   R++  Y  +    +  +    P+
Sbjct: 121 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 180

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +         +   L    +      +         P ++  LPGF  G   VQDAS
Sbjct: 181 WLRVNRQHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 240

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 241 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 300

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L A  +   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 301 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+  P             ++    
Sbjct: 360 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +     +  P             DGFF   + + 
Sbjct: 407 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 435


>gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 435

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 208/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 7   MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 61

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 62  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 120

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++E            + P W   R++  Y  +    +  +    P+
Sbjct: 121 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 180

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +      +         P ++  LPGF  G   VQDAS
Sbjct: 181 WLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 240

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 241 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 300

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L A  +   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 301 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+  P             ++    
Sbjct: 360 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +     +  P             DGFF   + + 
Sbjct: 407 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 435


>gi|332085437|gb|EGI90603.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
           5216-82]
          Length = 429

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 116/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTHIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R + E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +   +   ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTQHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYANLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG +RRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVVRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429


>gi|224493303|sp|A9R925|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
          Length = 429

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 207/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++E            + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +         +   L    +      +         P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVNRQHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L A  +   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+  P             ++    
Sbjct: 354 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 400

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +     +  P             DGFF   + + 
Sbjct: 401 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 429


>gi|304399258|ref|ZP_07381124.1| sun protein [Pantoea sp. aB]
 gi|304353184|gb|EFM17565.1| sun protein [Pantoea sp. aB]
          Length = 433

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 134/458 (29%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R +S+ L+  V+ K  SL   L      +A + LS +D  LV+ I    LR L
Sbjct: 1   MTKSINLRSLSAQLIERVVDKGESLNTALP-----AAQKKLSDKDSALVQEICFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++A++  ++   L  K+  L  L+ V + Q+ Y  V  +A +   V  A+  K     
Sbjct: 56  PQLEALIGKLMARPLTGKQRVLHYLIMVGLYQLEYTRVPAHAALAETVAGAEVLKRT-SL 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E    +Q      + P W  +RL++ +  E+   I +A      
Sbjct: 115 KGLLNGVLRQFQRQREELLASIQDGPQRYLHPGWLLKRLQHAWP-EQWQQIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V     + + W   L                     P  +  LPGF +G   VQD 
Sbjct: 174 MWLRVNQQHHERDAWLALLTESGRNAQPADDVPDALRLDAPAPVSQLPGFGQGWVTVQDL 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA     L    N   +LDLCAAPGGKT     I   A+V A+DV  +RL+++  NL RL
Sbjct: 234 SAQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPEAEVMAVDVDAQRLKRVEENLQRL 293

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A D+ + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKA-DVKQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +KPGG ++++ CS+  +++ + +   L+      + VPL  A       
Sbjct: 353 QSEILNAVWPHLKPGGTLIYATCSILPEENHQQIDAFLQRQH-DAQAVPLRDA------- 404

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                P   +++ P         + G DGFF   L + 
Sbjct: 405 -----PANGLQVFPQ--------AEGGDGFFYAKLIKK 429


>gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase B [Yersinia pestis KIM 10]
 gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 32953]
 gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua]
 gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516]
 gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F]
 gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
 gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758]
 gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase B [Yersinia pestis biovar Microtus str.
           91001]
 gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1]
 gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII]
 gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+]
 gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase B [Yersinia pestis CO92]
 gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
 gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
 gi|46396984|sp|Q8ZJ81|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|81638254|sp|Q664V2|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|122979388|sp|Q1C2X7|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|122979880|sp|Q1CCX4|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493292|sp|A7FNK4|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493293|sp|B2K506|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493294|sp|A4TH21|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493295|sp|B1JJH6|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM 10]
 gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516]
 gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua]
 gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F]
 gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
 gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia
           pseudotuberculosis IP 31758]
 gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII]
 gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+]
 gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
 gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
 gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 429

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 208/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++E            + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +      +         P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L A  +   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+  P             ++    
Sbjct: 354 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 400

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +     +  P             DGFF   + + 
Sbjct: 401 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 429


>gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345]
 gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345]
          Length = 426

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 201/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ ++  V+ K ISL+  L  +         S +D+ L+  +    +R LP++D
Sbjct: 1   MNLRALAAKVVFQVLEKGISLSVALPDQQRHLD----SGKDKALLAELCYGVMRHLPQLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   +   +  K+  + QLL +   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KQVSDCMSKQMKGKQRIVHQLLLIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R++  L      +    P W  +RL++ Y       I  +   P     +  
Sbjct: 116 NGVLRNIQRQEKPLATDNDTLAYNTPAWIIKRLKDAYPDNWQSVIEQSHERPPMWLRNNQ 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                ET+   L      A    +    L   P  ++ LPGF  G   VQD +A     L
Sbjct: 176 QSQTRETYLLALAGLEIEAQAGNSPDSILLSSPRDVMQLPGFETGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                +  VLD CAAPGGKT     +    K+ A+D   +RLE+++ NLDRL L AE + 
Sbjct: 236 LAPQGDELVLDACAAPGGKTCHLLELAPNIKLVAVDFDAKRLERVQQNLDRLSLKAELVH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +     FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q ++     
Sbjct: 296 GDAANIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAQLQSQIFDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++F+ CS+  Q++++ V   L  +P    LVP+                   
Sbjct: 356 KWLKPGGTLLFATCSILPQENKDQVSAFLARTPDAT-LVPIEEQANPD------------ 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                D+  +I      MDGF+   L +
Sbjct: 403 -----DIGWQIVPGQDNMDGFYYARLVK 425


>gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           frederiksenii ATCC 33641]
 gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           frederiksenii ATCC 33641]
          Length = 429

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L   +       +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGLHK-----SISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSRYLHPSWLLARIKQTYPAQWQQILDANNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +      +         P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVSRLHHSRNEYLDLLKQANIDALPHDVYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++       V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKTHVLAVDIDEQRLNRVKENLQRLK 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L A  +   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LNAV-VRVGDGRTPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+      ELV   +A        
Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQITAFLQRH-DEAELVETGTASAPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                            +        DGFF   L +
Sbjct: 409 ----------------RQNLPHPEDGDGFFYAKLIK 428


>gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum D str. 1873]
 gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum D str. 1873]
          Length = 443

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 204/457 (44%), Gaps = 40/457 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR +   +L  V  K      +L     +   + ++++D+ L+  IV  T+++   IDA
Sbjct: 3   NARKICIDILEMVFNKNAYSNIVLRQSLNN---QKINEKDKGLITEIVYGTIKYKYTIDA 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L+  L          +  +LR+++ QI YLD + ++A V+ AV  AK+ K  R  +KLV
Sbjct: 60  ILNTYLKKGTKSVDSYILNILRITIYQIKYLDKIPNFAAVNEAVNIAKKHKSIRE-SKLV 118

Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N +LR   R   ++                  +W  +   N Y +E    I +       
Sbjct: 119 NGVLRNYLRNLDKVYYNKNSVVERLCFEYSCEKWLVKMFINQYNEEITEKILNGLNERPA 178

Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V      +    N                   +    +SI S P F +G   VQD 
Sbjct: 179 VTVRVNNLKTDYDEAFNKLEEYGYSIEEGYVCPEAIIINKGKSIESNPLFEDGKVTVQDE 238

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +            VLDLC+APGGKT  +   + +  KV A D+ + +L  ++ N  R
Sbjct: 239 SAMLVAATMDIKEGSLVLDLCSAPGGKTTHISEIMNNTGKVMAFDIHENKLSLVKDNAKR 298

Query: 286 LHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +   +  ++DA  +  K     DAVL+D PCS  G IR+ P++ +T++ + +      
Sbjct: 299 LGINNIECSKLDASKFNEKLKETADAVLIDVPCSGLGIIRKKPEIKYTKNMESVKDIVNI 358

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q++++     +VK GG +++S C+++K+++E+ +   +R+ P       +   ++  +D 
Sbjct: 359 QKEIMKNAARYVKVGGTLLYSTCTINKKENEQNIDWFIRNFPEYT----VEPIFYGEMD- 413

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +    + I P+           MDGFF   L+R
Sbjct: 414 NIIYNENRTVTILPNKY---------MDGFFIAKLKR 441


>gi|295687552|ref|YP_003591245.1| sun protein [Caulobacter segnis ATCC 21756]
 gi|295429455|gb|ADG08627.1| sun protein [Caulobacter segnis ATCC 21756]
          Length = 431

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 216/439 (49%), Gaps = 19/439 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+ AR  +  L+   + +R  L          + FR L  R++   RA+    LR L  I
Sbjct: 8   GLPAREAALTLIDAALSRRGGLDEA----ASANGFRFLEPRERAFARALAMAVLRHLGPI 63

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D  L   L  + P +   +  LLR+  AQ  +L+V  +A V  +VE A  +K +R F  L
Sbjct: 64  DRALAARLQKAPPDR---VMHLLRLGAAQAFHLEVPAFAAVATSVELAGANKASRPFKGL 120

Query: 124 VNSILRRVSREKIELLQRIAGISII-PEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           VN++LR + R+           +++ P W   R    +G+     I+         DL++
Sbjct: 121 VNAVLRGLLRDAPTPDSLGDDPTLLAPPWLYSRWVAAFGEATAREIAGQIALEPATDLSL 180

Query: 183 KFDIETWAHKLNAVMLP-TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           K + +  A           GG         + + PGF +G WWVQDA+A++P +L     
Sbjct: 181 KPNADAAALAEALEGEVLPGGTLRLRRKGDVAAWPGFEDGSWWVQDAAAAVPARLLDVKT 240

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             +VLDLCAAPGGKT QL  +GA V ALD S  RL++L  NL R  L A  ++  D   +
Sbjct: 241 GEAVLDLCAAPGGKTLQLAAAGADVVALDRSAARLKRLEENLVRTGLSA-QVVVADGAAW 299

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FDA+L+DAPCS+TGT RRHPDVLW     D+   A  Q ++L      +KPG  +
Sbjct: 300 DDARTFDAILLDAPCSATGTFRRHPDVLWAARPGDVASLANVQARILDSAAGRLKPGARL 359

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL+ ++ E  V+  L   P  +EL P+      + +   +L+  G +R+ P  L+
Sbjct: 360 VYCVCSLEPEEGEAQVEAFLARRP-DMELDPIQPGEAGAPE--ASLTARGTLRLLPHQLD 416

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  G DGFFA   R+
Sbjct: 417 ------GGQDGFFAARFRK 429


>gi|331684931|ref|ZP_08385517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H299]
 gi|331077302|gb|EGI48514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           H299]
          Length = 429

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDACYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  +  LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           KIM D27]
 gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
 gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
 gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
 gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           KIM D27]
 gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
          Length = 431

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 208/457 (45%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 3   MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 58  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 116

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++E            + P W   R++  Y  +    +  +    P+
Sbjct: 117 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 176

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +      +         P ++  LPGF  G   VQDAS
Sbjct: 177 WLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 237 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 296

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L A  +   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 297 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 355

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+  P             ++    
Sbjct: 356 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 402

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +     +  P             DGFF   + + 
Sbjct: 403 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 431


>gi|329847341|ref|ZP_08262369.1| nusB family protein [Asticcacaulis biprosthecum C19]
 gi|328842404|gb|EGF91973.1| nusB family protein [Asticcacaulis biprosthecum C19]
          Length = 457

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 153/439 (34%), Positives = 223/439 (50%), Gaps = 19/439 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           GMNARL +  L+   + KR      +      S F  L+  ++   RA+  + LR L ++
Sbjct: 33  GMNARLAALTLIDAALEKRTGFDEAVTR----SDFLSLNDSERGFARALAMLVLRRLGQL 88

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D V+D     +       +  LLR+ +AQI ++ V D+A V   V+ A+R+   R F  L
Sbjct: 89  DYVIDKKTQKAPNDG---VWALLRIGLAQIGFMQVPDFAAVSTTVKLAEREAHTRPFKGL 145

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           +N+ILR V RE        + ++  P+W  +R +  YG+     I+         DLT K
Sbjct: 146 INAILRSVIREGGLNTPLPSRLA--PDWLFQRWKAAYGEPNAEGIALMLTEEPATDLTFK 203

Query: 184 F--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              D+E    +L    L  G      L  +I    G+ +GVWWVQDA+AS+   L G L 
Sbjct: 204 TAADLERLKDELQGTPLG-GLALRSALRGNIAEWAGYGQGVWWVQDAAASVAAGLLGDLT 262

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             + +DLCAAPGGK  Q+I +G  V ALD S+ RL+++  NL R  L AE ++  DA  +
Sbjct: 263 GKTAIDLCAAPGGKALQMIAAGGDVIALDRSRNRLKRVEENLVRTGLTAEVVM-GDAETW 321

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FDAVL+DAPCS+TGT+RR PDVLW     DI K A  Q +LL      VKPGG +
Sbjct: 322 EDTRQFDAVLLDAPCSATGTLRRQPDVLWATRPTDIAKLADVQHRLLDSASGRVKPGGSL 381

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           ++  CSL++++ E  V   LR  P      P ++          +++ +GW+R+ P    
Sbjct: 382 IYCTCSLEREEGETQVVAFLRRHPDFAIKKPDDATVIALGVPVESVAAQGWLRLLPHH-- 439

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  G DGFF   L R
Sbjct: 440 ----RPGGQDGFFIAHLVR 454


>gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
           ATCC 35236]
 gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
           ATCC 35236]
          Length = 429

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 213/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPEL-----QKNISDKDRALLQELCFGALRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPLTGKQRIFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSRYLHPSWLLARIKQAYPDQWQQILEANNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +                P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVSRLHHSRNEYLELLKQANIDALPHDFYSDAVRLITPCAVNDLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    +   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL+
Sbjct: 235 AQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLN 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A  +   D     ++C  + FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q
Sbjct: 295 LHAV-VRVGDGRTPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAKLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+   ++++ +   L+      ELV   +A        
Sbjct: 354 SEIVEAIWPKLKKGGVMVYATCSILPDENQQQIAAFLQRH-SEAELVETGTAVAPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------KQNLPHPEDGDGFFYAKLIK 428


>gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 461

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 193/462 (41%), Gaps = 37/462 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +  NAR  +  +L+   +++  +  LL  +  +        RD+ L  A+VN TL+   
Sbjct: 11  SNDHNARRTAVRILTRAEKEKAYVNLLLQRQLRELG----DSRDRQLAAALVNGTLKNRL 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D  +   L + +    + ++ +LR    Q+LY+D +   A V+ AV+  K +     F
Sbjct: 67  TLDYAIRRHLKTPMSALPHMVRAILRTGAFQLLYMDRIPAAAAVNEAVKSVKAE--EPKF 124

Query: 121 AKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDA 171
           A LVNS+L RV+    E              A     P+W   R    +G E    +  +
Sbjct: 125 AGLVNSVLHRVAEVGWEFPWPDQKKEPARYLAVKYSHPQWLAARWLARWGLEETEKLCIS 184

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGV 222
              P    +         E    +L    +       T      E   ++  L  + EG+
Sbjct: 185 NNLPAPTCIRTNTLKISRENLVSRLENEGIQVTLSAKTPEGLFIEDFGALDELLSYQEGL 244

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           + VQD S+ +   + G      VLD+C APGGKT  L   + +   +   D+   +L  +
Sbjct: 245 FTVQDESSQLVAHILGVKPGERVLDVCCAPGGKTTHLAQLMNNQGTIIGNDLYPAKLSLV 304

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              ++RL +        DA      +  FD VLVDAPCS  G IRR  D+ W +   +I 
Sbjct: 305 NELVERLGIGIIQTQAGDAGILEGIEGRFDKVLVDAPCSGLGVIRRRADLRWQKSEQEIK 364

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + +  Q+K+LL+   FV PGG +V+S C+++ +++ EVV+      P    +       +
Sbjct: 365 ELSEIQKKILLRAADFVAPGGEMVYSTCTIEPEENFEVVKVFRAERPDFSSVSLTGEINF 424

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      +G  +I P +          MDGFF    RR
Sbjct: 425 PVTAGDKKQLAKGVFQILPHLY--------NMDGFFLAKFRR 458


>gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
           salmonicida LFI1238]
 gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
           salmonicida LFI1238]
          Length = 444

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 43/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ ++  V+ +  SL+  L       A   +  RDQ L++ I    LRFLPR++
Sbjct: 19  MNVRAAAAKVIYQVVDQGHSLSSALPK-----AQSEIKPRDQALLQEICYGVLRFLPRLE 73

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +V   ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  +    L+
Sbjct: 74  SVAQSLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKNLKGPK-LRGLI 132

Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N +LR   R + E     +   +G    P W  + L+  Y  +   +  ++   +P+++ 
Sbjct: 133 NGVLRSYQRSQEELDAKSISHDSGKYGHPGWLLKMLKEAYPTQWESIVEANNSKAPMWLR 192

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +            L +    + +LPGF +G   VQDA+A +
Sbjct: 193 VNSQHHTRDEYIALLEKEEIAVTPHSQATDALLLDKARDVFTLPGFEKGWVSVQDAAAQL 252

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V+     +   +LD CAAPGGKTA          V A+D  + RL ++  NL+RL+L A
Sbjct: 253 SVEYLQPQDGELILDCCAAPGGKTAHILERTKNTNVVAIDCDETRLTRVYENLERLNLEA 312

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R ++DI   A  Q ++ 
Sbjct: 313 KVICGDARHPEEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRSEDIKALAELQSEIF 372

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++ + V+  L  +     +   + A            
Sbjct: 373 DAMWLQLKSGGTMVYATCSITPQENGDQVKAFLERTENASLVDNTDPAKP---------- 422

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L++
Sbjct: 423 ---GRQILPG--------EENMDGFYYAVLQK 443


>gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 462

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 110/472 (23%), Positives = 205/472 (43%), Gaps = 46/472 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   ++R ++    + +++ +     +L+   G +    L  +D+ L   I   TL++ 
Sbjct: 1   MKIK-SSRELAFVAYTRIIQDQAYSNLVLNQLLGKT---DLLAQDKALASRITYGTLQWQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID  L  +    L +       LLR+   QIL+LD V   A V+  V+ A R + ++ 
Sbjct: 57  GLIDYYLKTLSHRPLSKLSNKALFLLRMGAYQILFLDRVPPSASVNETVKVAHR-RTHKG 115

Query: 120 FAKLVNSILRRVSREKIELL---------QRIAGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN ILR + R+K ++L           ++     P W  +   + YG ++ ++I D
Sbjct: 116 IANFVNGILRNLIRKKDQILLPSRDQDLLNYLSVKYSHPYWMVKLWYDKYGLDKTISIMD 175

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEG 221
              S     + V      +E   ++L    +            L +    + +   F  G
Sbjct: 176 QNNSTPEEAIRVNKLLTSLENLKNELEMTGIQSRLSSKIDDALLVDNLGDLNNNTLFNCG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEK 278
            + VQD ++ +   L       +++DLC+APG KT  L+        + A+D+ + RL+ 
Sbjct: 236 YFQVQDINSMVVSHLCDPQQGDNIIDLCSAPGSKTTHLVQLIDGQGSILAVDIHEHRLKL 295

Query: 279 LRCNLDRLHLYAEDIIEMD----------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
           ++    RL +   ++ + D            +   K  FD  L+DAPCS  GT+R+ P++
Sbjct: 296 VKEACRRLQVNNVNVKQADGTKLISRDQQENNKQLKGQFDLCLIDAPCSGLGTLRKRPEL 355

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            WT    D+   +  Q KLL  G   VKPGG +V+S C+++ Q++E+ +   L++ P  V
Sbjct: 356 KWTISEQDLNSLSTLQGKLLKAGSQLVKPGGTLVYSTCTINPQENEDQINDFLKNHPDFV 415

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              P  +   +       +     ++  P++           DGF+   +++
Sbjct: 416 MESP-RAILKEDTLQGGMILSNNSLQYFPELNLG--------DGFYGARMKK 458


>gi|119943873|ref|YP_941553.1| sun protein [Psychromonas ingrahamii 37]
 gi|119862477|gb|ABM01954.1| sun protein [Psychromonas ingrahamii 37]
          Length = 436

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 202/454 (44%), Gaps = 38/454 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ +L+ V+ +  SL+ +L         + LS +D+ L++ +    LR LPR+D
Sbjct: 1   MNVRALAAKILNQVVEQGQSLSNVLP-----PVQQDLSPKDKALLQVLCYGVLRTLPRLD 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
                ++  +L  K+  L  L+ V   Q+LY  +  +A V   V  AK  K+ +    +V
Sbjct: 56  FFCRSLMDKALKGKQRDLHFLILVGFYQLLYTRIPSHAAVGETVNGAKELKK-QALKGMV 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N +LR   RE+     +  ++ A +   P W  +RL+  YG E    I         + L
Sbjct: 115 NGVLRNFLREQESLVEKANKQPALVYCHPSWLVKRLQAAYGDELAAQIMHNNNQQAPMWL 174

Query: 181 TV---KFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
            V       + +   LN                  E P  +  LPGF EG   VQD +A 
Sbjct: 175 RVNALHHTRDQYQVLLNDAGLLSFSSEFNDNALRLEKPTDVYKLPGFTEGWVSVQDGAAQ 234

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +            VLD C+APGGKT  +     +  ++ A+D   +RL +++ NLDRL L
Sbjct: 235 LAAHYLDAQAGDLVLDACSAPGGKTVHVLELQKNIKQMVAVDADAKRLLRVQENLDRLKL 294

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A            +   +LFD +L DAPCS+TG IRRHPD+ W R   DI      Q+ 
Sbjct: 295 KASVIHGDASQPGSWWHGELFDRILCDAPCSATGVIRRHPDIRWLRRESDIAGLVSLQKN 354

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      +KPGGI++++ CS+   +++  +Q  L S      L+PL        D    
Sbjct: 355 ILHALWDKLKPGGILLYATCSILPDENDLQIQDFLESR-QDASLIPL-----IVQDNLQN 408

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +I P+           MDGF+   L++
Sbjct: 409 NIQNKGRQILPN--------EDAMDGFYYAKLQK 434


>gi|320655927|gb|EFX23847.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
          Length = 429

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++  +   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKSMARPMTGKQRTVHYLIIVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|283797834|ref|ZP_06346987.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           M62/1]
 gi|291074522|gb|EFE11886.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           M62/1]
          Length = 472

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/453 (22%), Positives = 206/453 (45%), Gaps = 27/453 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR +++ +L  V+ K+     +L        ++ L ++++  ++ +V+ TL  L +ID +
Sbjct: 29  AREIAADILMEVLEKKQYSHVVLLNALK--KYQYLEKQERSFIKRVVDGTLERLMQIDFI 86

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++    + L + K +++ +LR+ V QI Y+D V D A  + AV+   + +        VN
Sbjct: 87  IESFSSTPLRKMKPTVRTILRMGVYQICYMDRVPDSAACNEAVKLTVK-RGFSGLKGFVN 145

Query: 126 SILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
            +LR ++R+K E+     +    +P+W   + E  YG++ V  ++++ +    + + +  
Sbjct: 146 GVLRNIARKKEEISWPDDSVRYCLPQWILGQWEPEYGRKAVQVMAESFLRERPLTVRMNL 205

Query: 185 D---IETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
           +    E     L            +  +   +  + +  L  FA+G   VQD S+S+   
Sbjct: 206 NQAPREEILESLREQGVEVIESGYSDQVVFLKNVDYLEGLDAFADGFLQVQDLSSSLAGD 265

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      V+D+C APGGK+  +         V   D+S+ ++  +  N+ R  L+  +
Sbjct: 266 AAGVKEGSHVIDVCGAPGGKSLHIAELLNGTGMVEVRDLSESKIALVEDNIRRSGLFNIE 325

Query: 293 IIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
               D   FD   ++  D ++ D PCS  G + R PD+ +    +  +  A  QR++L  
Sbjct: 326 ARVQDALEFDRDSEETADLLIADLPCSGLGIMGRKPDIRYNMTREQTLALAGLQREILSV 385

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
              +VKPGG +V+S C++D+ ++EE    +L + P     +        +  +      E
Sbjct: 386 VWRYVKPGGTMVYSTCTIDRAENEENAAWILENLPFEPVDLTERIGEELAKTLCRDTRKE 445

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G++++ P             DGFF    RR  +
Sbjct: 446 GYVQLLPGFYPG--------DGFFISVFRRKEE 470


>gi|218550564|ref|YP_002384355.1| 16S rRNA methyltransferase B [Escherichia fergusonii ATCC 35469]
 gi|254766861|sp|B7LRQ5|RSMB_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|218358105|emb|CAQ90752.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia
           fergusonii ATCC 35469]
 gi|324111967|gb|EGC05946.1| ribosomal RNA small subunit methyltransferase B [Escherichia
           fergusonii B253]
          Length = 429

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 212/457 (46%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ E            + P W  +RL+  Y ++    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       ++W   L+   +                P  +  LPGF EG   VQDAS
Sbjct: 175 WLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +K GGI++++ CS+  +++   ++  L+ +                 ++ 
Sbjct: 354 SEILDAIWPHLKSGGILIYATCSVLPEENSLQIKAFLQRTADA--------------ELC 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +PE          ++    +   DGFF   L + 
Sbjct: 400 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|293393280|ref|ZP_06637594.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
 gi|291424190|gb|EFE97405.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
          Length = 429

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 212/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +  V+ +  SL+ +L      S  + +S +D+ L++ +   TLR L
Sbjct: 1   MKNNYNLRSIAAQAIGQVLDQGQSLSTILP-----SLQKNISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+ +L  LL V + Q+LY  +  +A +   V  A   K  +  
Sbjct: 56  PQLEWCIQQLMAKPMVGKQRTLHYLLMVGMYQLLYTRIPAHAALAETVNGAVALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ +LLQR A      + P W  +R++  Y  E+   I +A      
Sbjct: 115 KGLINGVLRQFQRQQDQLLQRAANNDSRYLHPSWLLKRIQQAYP-EQWEHIVEANNQKPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       + +   +    +                P ++  LPGFAEG   VQDA
Sbjct: 174 MWLRVNRLHHTRDEYLKLMEQAGIAAAPHAEYRDALRLLSPCAVNELPGFAEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   V L    +   +LDLCAAPGGKT  ++     A V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLSRVNENLQRL 293

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              AE + + D      +C  K FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 RFSAE-VKQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELASL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +++      +KPGG++V++ CS+  Q++ E V   L+       +             
Sbjct: 353 QAEIMDAIWPHLKPGGVMVYATCSILPQENNEQVLAFLQRHADAQRVETGKQHQPG---- 408

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                             +        DGFF   L +L
Sbjct: 409 -----------------RQNLPHPEDGDGFFYAKLIKL 429


>gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 429

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 196/447 (43%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     SA   + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A     P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A         ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNE 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V+ K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|56964082|ref|YP_175813.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
 gi|56910325|dbj|BAD64852.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
          Length = 447

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 123/462 (26%), Positives = 206/462 (44%), Gaps = 36/462 (7%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +  + R V+   L  V + +     LL     +     L +RD  L+  +V  T+     
Sbjct: 2   NRPSVREVALDALLKVEKNQAYSHLLLHSTLTN---AGLDKRDSGLLTELVYGTIARKRT 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +D  L   L S   ++   +  LLR+SV Q+++LD + D AVV  AV  A + + ++  +
Sbjct: 59  LDYYLAPFLKSG-KKRALWVDVLLRLSVYQMVFLDRIPDRAVVHEAVTIANK-RGHKGIS 116

Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
            LVN +LR + R+         + ++R A  +  P+W   R  N YG++  +A+++A   
Sbjct: 117 GLVNGVLRSIQRQGLPNVDAIADPIERAAVQTSHPQWLMARWMNQYGEDDAIAMANANNI 176

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPT---------GGIRLKELPESIVSLPGFAEGVWWV 225
           P  + L V     T A  +  +               + +     +      + +G++  
Sbjct: 177 PPEVCLRVNRMKTTAAELVAHLGNEGVEAERSKLLPDLAVIIKKGNPFGGEAYKKGLFTA 236

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282
           QD ++ +  +L G    + VLD CAAPGGKT      +     + ALD+   +++ +   
Sbjct: 237 QDEASMLVAKLLGPEEGMDVLDACAAPGGKTTHIAEQMNGTGHILALDLHPHKVKLIAEQ 296

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             RL L   +    DA     KK ++ VLVDAPC+  G IRR PD+ W++   D+   A 
Sbjct: 297 AARLGLENIETRAEDARTLQTKKHYNRVLVDAPCTGFGVIRRKPDIRWSKTEKDVKHIAN 356

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L     FVK GG +V+S C+++K+++E  +++ L + P               I 
Sbjct: 357 VQAAILAHASQFVKQGGTLVYSTCTIEKEENEHAIERFLDTHPQFETNERFYGRLPDHIQ 416

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                SP G + I P           G DGFF V L R  +P
Sbjct: 417 ANGRFSPLG-LTILPHDF--------GTDGFFMVPLTR--KP 447


>gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895]
 gi|224493244|sp|A8AQI3|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 211/457 (46%), Gaps = 45/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKK-QNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+L+  +  +A +   VE A   K  +  
Sbjct: 55  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVAIKRPQ-L 113

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+  Y  +   +  ++    P+
Sbjct: 114 KGLINGVLRQFQRQQEALLAEFATSEARFLHPSWLLKRLQKSYPTQWEAIVEANNQRPPM 173

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       ++W   L    +                P  + +LPGF EG   VQDAS
Sbjct: 174 WLRVNRTHHSRDSWLTLLQDAGMNGFPHSAYPDALRLESPAPVHALPGFEEGWVTVQDAS 233

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V      N   +LDLCAAPGGKT  ++     A+V A+DV ++RL ++  NL RL 
Sbjct: 234 AQGCVSFLAPQNGEKILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKRLG 293

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 294 MKAT-VKQGDGRYPAQWCGEQKFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQ 352

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +K GG +V++ CS+  +++ + +   L+ +P                   
Sbjct: 353 SEILDAIWPHLKSGGTLVYATCSVLPEENSQQILAFLQRTPDATL-------------TG 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +  ++  P   E         DGFF   L + 
Sbjct: 400 TGTPAQPGVQNLPGAEEG--------DGFFYAKLIKK 428


>gi|153953997|ref|YP_001394762.1| hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555]
 gi|219854611|ref|YP_002471733.1| hypothetical protein CKR_1268 [Clostridium kluyveri NBRC 12016]
 gi|146346878|gb|EDK33414.1| Hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555]
 gi|219568335|dbj|BAH06319.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 443

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 123/460 (26%), Positives = 209/460 (45%), Gaps = 43/460 (9%)

Query: 5   MN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           MN AR V+  ++  V+      + +L+          L+++D+ L+  +V  TL++   I
Sbjct: 1   MNSARSVAVEVVKKVLYDNAYSSIVLNKYLNK---FDLNKKDRALITELVYGTLKYKYTI 57

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D +L   + S+L +    +  +LR+S+ Q+ YLD + ++AVV+ AVE +K        +K
Sbjct: 58  DCILKNFIKSNLEKMNKDILNMLRISICQLRYLDKIPEFAVVNEAVEFSKNISF--KLSK 115

Query: 123 LVNSILRRVSREKIELL--------QRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           LVN +LR   R K            + I      P W  E   N YG++    I  +   
Sbjct: 116 LVNGVLRNYLRNKSNSFGGNKEDKIEGICFEYSFPRWMAELFINQYGEDLGKFIMGSLNV 175

Query: 175 PLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGVWWV 225
              + + +      + H  N +                 +     +I   P F +G   V
Sbjct: 176 VPKVTVRINTLKTDYKHAWNELIVNGYDVKRGNVYKEAVIINKGSNIELNPLFEKGHITV 235

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD SA +         N+++LDLC+APGGK+  +   + +   V   D+ + +L  +R N
Sbjct: 236 QDESAMLVSYFMDVEENMTILDLCSAPGGKSCHIGELMKNTGNVHCYDLYESKLSLVRHN 295

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            +RL +      ++DA  Y  K     D VL+D PCS  G IR+ P++ W +  D +   
Sbjct: 296 AERLGIKNITCKKLDAAKYLEKLKDTADRVLIDVPCSGLGIIRKKPEIKWNKKEDSLKDL 355

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QRK++L    +VK GG +V+S C+L+K+++EE +   +  +P   +L  L    + +
Sbjct: 356 IEIQRKIILNAARYVKVGGKLVYSTCTLNKKENEENINWFISRNP-QYKLDKLYCGDFHN 414

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           I        EG++ I PD         + MDGFF   L +
Sbjct: 415 I----IYHEEGYMTILPD---------NHMDGFFIARLIK 441


>gi|331674796|ref|ZP_08375553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA280]
 gi|331067705|gb|EGI39103.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA280]
          Length = 429

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 116/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++    L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRVNRTHHSRDSLLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMSWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG ++++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKSFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217]
 gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217]
          Length = 428

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 122/448 (27%), Positives = 195/448 (43%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L L+         + +D+ L+  +    +R LP++D
Sbjct: 2   MNLRALAAKAIFDVLEKGLSLSVALPLQQQHVQ----NGKDKALLAELCYGVMRQLPQLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L      K+  L QLL V   Q+ +  +  +A V    E A R  +     K+V
Sbjct: 58  KCVSDCLAKPFKGKQRILHQLLLVGCYQLYFTRIPSHAAVSETAE-ACRQLKFDGLVKVV 116

Query: 125 NSILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R++ EL           P W  +RL+  Y ++    I  +   P     +  
Sbjct: 117 NGVLRNIQRQEPELNTDSDTLKYNTPAWLIKRLQQAYPQDWQQVIEQSHERPPMWLRNNR 176

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +    + +   L      A    +    L E P  ++ LPGF  G   VQD +A     L
Sbjct: 177 LVQTRDAYLASLTNENIEASAGLSPDAILLESPTDVLQLPGFMSGSASVQDGAAQWAATL 236

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292
                N  VLD CAAPGGKT     I     +TA+D   +RLE+++ NLDRL L A    
Sbjct: 237 LAPQANEVVLDACAAPGGKTCHLLEIAPNISLTAVDFDLKRLERVQQNLDRLKLTAQVIH 296

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L    
Sbjct: 297 GDAANIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNSDIDELATLQMQILDHCW 356

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  +++ + +   L  +     +          I           
Sbjct: 357 QWLKPGGTLLYATCSILPEENSQQINAFLTRTADASLVAISEQKNPADIGW--------- 407

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +I P            MDGF+   L +
Sbjct: 408 -QILPG--------QDNMDGFYYARLVK 426


>gi|325498857|gb|EGC96716.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227]
          Length = 429

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 212/457 (46%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ E            + P W  +RL+  Y ++    I  +    P+
Sbjct: 115 KGLINGVLRQFHRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       ++W   L+   +                P  +  LPGF EG   VQDAS
Sbjct: 175 WLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +K GGI++++ CS+  +++   ++  L+ +                 ++ 
Sbjct: 354 SEILDAIWPHLKSGGILIYATCSVLPEENSLQIKAFLQRTADA--------------ELC 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +PE          ++    +   DGFF   L + 
Sbjct: 400 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis IBL 4222]
 gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis IBL 4222]
          Length = 429

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 196/447 (43%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     SA   + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A     P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A         ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNE 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V+ K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSKYINEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|254519240|ref|ZP_05131296.1| sun protein [Clostridium sp. 7_2_43FAA]
 gi|226912989|gb|EEH98190.1| sun protein [Clostridium sp. 7_2_43FAA]
          Length = 439

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 194/458 (42%), Gaps = 41/458 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M +R ++  ++  V+ +      +L  E  +     +  +D+ L+  IV  TLR    +D
Sbjct: 1   MKSRKLARQIIQRVLEEGAYSNLVLSNELNNI---DIEDKDKGLITEIVYGTLRRKRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++   +   +     ++  +LRV++ Q+ +LD + +YA  + AVE+AK        +KL
Sbjct: 58  VLIGNFV-KDINLIDTTVLNILRVAIYQMYFLDKIPEYAACNEAVEEAKEVSLE--ASKL 114

Query: 124 VNSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR   +++         +  +A       W        YG+ER + +         
Sbjct: 115 VNGILRNYIKDEKEIVVPGNRIDELAYKFSFQPWMIRLFIKQYGEERTMKLMAGLNETPK 174

Query: 178 IDLTVKFDIETW---AHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + + V      +     KL  +                   + I     F EG+  VQD 
Sbjct: 175 VTVRVNEFKAEYDEVYEKLEEIGYNIEDGYACPEAIAIKGGKGIEDNQLFKEGLITVQDE 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285
           SA +   L        VLDLCAAPGGKT  +     +  +V A D+ + +L  +  N  R
Sbjct: 235 SAMLVAPLLDLKEGDKVLDLCAAPGGKTTHIAELLANSGEVLAFDLHENKLSLIEENAKR 294

Query: 286 LHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L       MDA           D VL+D PCS  G IR+ P++ W +    +      
Sbjct: 295 LGLNNIVCKAMDATKLNSDYISYGDKVLIDVPCSGLGIIRKKPEIKWNKTRQQLKDLVPI 354

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR+++     ++KPGG +V+S C+L+K+++EE ++  L       E+  +    +   + 
Sbjct: 355 QREIMENAWQYLKPGGTLVYSTCTLNKEENEENLKWFLSKH-NDAEIEKI----YIGNNN 409

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               + +G + I P+           MDGFF   ++++
Sbjct: 410 NFIYNGDGSLTILPN---------DSMDGFFIGKIKKI 438


>gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT]
 gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT]
          Length = 443

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 188/457 (41%), Gaps = 40/457 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR +   +L  V  K      +L      +    +  +D+ L+  IV  T+++   ID 
Sbjct: 3   KARKICVDILEVVFNKNAYSNIVLRQTLNKNK---IDDKDKGLITEIVYGTIKYKYTIDT 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L+  L   +      +  +LR++V QI +LD + ++A V+ AVE AK++K +   +KLV
Sbjct: 60  ILNNFLKKGIKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKEK-SVGASKLV 118

Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N +LR   R   +                   +W    L   YG E    I         
Sbjct: 119 NGVLRNYLRNLDKKYYNDKNLVETLCFKYSYDKWLVNMLIKQYGNEIAEDILKGLNERPA 178

Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V           +                   +    +SI   P F EG   VQD 
Sbjct: 179 VTVRVNNLKTDHDEAFSNLEEYGYDVEEGYICPEAIVINKGKSIEKNPLFKEGKITVQDE 238

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +           +VLDLC+APGGKT  +   + +   V A D+ + +L  ++ N  R
Sbjct: 239 SAMLVAPSIDAKEGATVLDLCSAPGGKTTHISEIMNNTGIVKAFDIHENKLSLVKENAKR 298

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +      EMDA  +  +     D VL+D PCS  G IR+ P++ +T+D          
Sbjct: 299 LGIDNISCAEMDASKFNKELENSADMVLIDVPCSGLGIIRKKPEIKYTKDIKSTKDIVAI 358

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+K++     +VK  G +++S C+++K+++E+ +   ++  P            +     
Sbjct: 359 QKKIMENAAKYVKKEGTLLYSTCTINKEENEKNINWFIKKFPEYKV-----EPLFYGNMS 413

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  G + I P+           MDGFF   L++
Sbjct: 414 NIIYNENGTVTILPNKY---------MDGFFIAKLKK 441


>gi|163797843|ref|ZP_02191788.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199]
 gi|159176887|gb|EDP61454.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199]
          Length = 436

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 163/435 (37%), Positives = 242/435 (55%), Gaps = 13/435 (2%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            +R V+  L   V+ KR  L   L           L +RD+   R +V  TLR L  +D 
Sbjct: 14  ASRSVAFDLFRAVLAKRTPLDEALA---AHDGLAKLPERDRGFARLLVATTLRRLGHVDR 70

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++D  +   LP K   ++ +LR++ +++L L VA +A VD AV   +  + +  F KL N
Sbjct: 71  LVDACIDKPLPTKAAVVRDILRLAASELLILGVAPHAAVDSAVNTVRS-RGHEPFVKLTN 129

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           ++LRR+ RE    + +++ +  +P+W  E     YG+    AI+ A      +D++VK D
Sbjct: 130 AVLRRLDREGRGEILKLSALEALPDWLAEGWRAAYGEATAEAIAAAGFVEPPLDISVKDD 189

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            E WA KL A +LP G +R +     I  LPGFAEG WWVQD +AS+P++L G + +  V
Sbjct: 190 PEGWAKKLGATLLPNGTLR-RGFDGRIEGLPGFAEGAWWVQDMAASLPIRLLGPVADRRV 248

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           +DLCAAPGGKTAQL  +GA+V A+D SK RL++L  NL RL L A      DA +   + 
Sbjct: 249 VDLCAAPGGKTAQLAAAGAQVLAIDRSKPRLQRLERNLARLGL-AASTRVADATEMKLEN 307

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
             DA+L+DAPCS+TGTIRRHPD+ W +  +D    A  Q +L+   +  + PGG +VF  
Sbjct: 308 PVDAILLDAPCSATGTIRRHPDIPWLKHANDADSLAGLQDRLIANAVRMLAPGGTLVFCT 367

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CSL+  +  E V   L ++P  ++ VP+          A  ++ +G +R  PD L  +  
Sbjct: 368 CSLEPIEGPERVAAALAANP-ELKRVPIRPDEIGG--FAELITVDGDLRSRPDQLANL-- 422

Query: 426 VSSGMDGFFAVALRR 440
              G+DGF+A  L R
Sbjct: 423 --GGIDGFYACRLVR 435


>gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 447

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 204/460 (44%), Gaps = 39/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++  +L  ++ K+     +L+    +     +   ++  ++ IV  T+     +D
Sbjct: 1   MNQRNIAFKILYEILVKKGYSNIVLNKYLNN---DGIEDVEKSFIKEIVFGTIERKYTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D+     + +    +  +L + + Q++Y+D V DYA ++ +V   K     ++ +K 
Sbjct: 58  RIIDYCSTKDIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVG-KYASKF 116

Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN++LR   R  +++            ++     PEW  +RL N Y ++   +I ++   
Sbjct: 117 VNAVLRSYLRNSMKIKFLQPNENLIEYLSFKYSFPEWIVKRLLNNYDRDATESILESLNG 176

Query: 175 PLYIDLTVKF---DIETWAHKLNAVM-----LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
              I + +     D + +  KLN                    ++I +   + +G+  VQ
Sbjct: 177 KPEISIRLNTLKIDGKNFEKKLNDRGLKYKKGMYNNDAYYIDLKNITNDEIYKDGLIQVQ 236

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D  A I  ++        V+D+C+APGGKT     L+ +  K+ A DV + +++ ++ N 
Sbjct: 237 DEGAMIISKVLSPKPGDMVIDVCSAPGGKTTHLSQLMNNKGKIVAFDVYEHKIDLIKRNC 296

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340
            RL +   D    D+     +     D VL D PCS  G IR+ PD+        D  + 
Sbjct: 297 RRLGVDNVDAFVFDSTKVNSEYIDKADKVLADVPCSGIGIIRKKPDIKLKNYTKKDFDEL 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L     +VK GG +++S C++ K+++  +V K L  +    ++  +     + 
Sbjct: 357 NNIQYRILSSSSKYVKKGGYILYSTCTIGKEENINIVDKFLNENK-EFKIADIRPFLPQ- 414

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++   +  +G I++ P++        +  DGFF   L+R
Sbjct: 415 -NLVHFVDDKGCIQLLPNL--------NNTDGFFICKLQR 445


>gi|323164853|gb|EFZ50644.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
           53G]
          Length = 454

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 115/456 (25%), Positives = 209/456 (45%), Gaps = 46/456 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
              N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L +
Sbjct: 28  KQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQ 82

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +    
Sbjct: 83  LDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKG 141

Query: 123 LVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           L+N +LR+   ++ E            + P W  +RL+  Y  E+  +I +A      + 
Sbjct: 142 LINGVLRQFQHQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPMW 200

Query: 180 LTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230
           L V       ++W   L+   +                P  + +LPGF +G   VQDASA
Sbjct: 201 LRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA 260

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
              +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL +
Sbjct: 261 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKRLGM 320

Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q 
Sbjct: 321 KAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS 379

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++  
Sbjct: 380 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCE 425

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +PE          ++    +   DGFF   L + 
Sbjct: 426 TGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 454


>gi|218706896|ref|YP_002414415.1| 16S rRNA methyltransferase B [Escherichia coli UMN026]
 gi|293406886|ref|ZP_06650810.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
 gi|298382627|ref|ZP_06992222.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
 gi|300896636|ref|ZP_07115153.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 198-1]
 gi|331664901|ref|ZP_08365802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA143]
 gi|254766859|sp|B7NDR0|RSMB_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|218433993|emb|CAR14910.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Escherichia coli
           UMN026]
 gi|284923295|emb|CBG36389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           042]
 gi|291425697|gb|EFE98731.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
 gi|298276463|gb|EFI17981.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
 gi|300359513|gb|EFJ75383.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           MS 198-1]
 gi|331057411|gb|EGI29397.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
           TA143]
          Length = 429

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDACYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       ++W   L+   +                P  +  LPGF EG   VQDA
Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG ++++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429


>gi|253690152|ref|YP_003019342.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259495486|sp|C6DFR7|RSMB_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|251756730|gb|ACT14806.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 429

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 214/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++ ++  V+ +  SL+ LL +       R +S++D+ L++ +    LR L
Sbjct: 1   MKSSYNLRSIAAKVVGQVLDQGQSLSALLPVH-----QREVSEKDRALLQELCFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+ +L  L+ V + Q+ Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGAVALKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +    +R   E I+     +   + P W   R+E+ Y    + +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQEELIQREANHSSHYLHPSWLLARIEHAYPNHWQTIVEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    E + + L    +                P ++  LPGF++G   VQDAS
Sbjct: 175 WLRVNRLHHTREAYLNLLAQEGIEAFPHTEFTDAIRLASPCAVDQLPGFSQGWATVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V      +   +LDLCAAPGGKT  ++     + V A+D+ + RL +++ NL RL 
Sbjct: 235 AQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPQSHVLAVDIDETRLGRVKENLLRLQ 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           ++AE + + D      +C  ++FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 295 MHAE-VKQGDGRYPDSWCEGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++       +K GG +V++ CS+  Q++ + V   L        LV   +         
Sbjct: 354 KEIFDAIWPHLKVGGTMVYATCSILPQENAQQVTDFLTRH-ADATLVDTGTRELPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I++ P         + G DGFF   L +
Sbjct: 409 --------IQMLPH--------ADGGDGFFYAKLVK 428


>gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum BKT015925]
 gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum BKT015925]
          Length = 443

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 198/457 (43%), Gaps = 40/457 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR +   +L  V  K      +L     +   + ++ +D+ L+  IV  T+++   ID 
Sbjct: 3   NARKICVDILEMVFNKNAYSNIVLRQSLNN---QKINDKDKGLITEIVYGTIKYKYTIDT 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L+  L          +  +LR ++ QI YLD + ++A V+ AV  AK+ K +   +KLV
Sbjct: 60  ILNAYLKKGTKSVDSYILNILRTTIYQIKYLDKIPNFAAVNEAVNIAKKHK-SIGESKLV 118

Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N +LR   R   ++           +      +W  +   N Y +E    I         
Sbjct: 119 NGVLRNYLRNLDKVYYNKNSIIERLSFEYSCEKWLVKMFINQYNEEIAEKILKGLNERPA 178

Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V      +    N                   +    +SI S P F +G   VQD 
Sbjct: 179 VTVRVNNLKTDYDEAFNKLEEYEYSIEEGYVCPEAIVINKGKSIESNPLFEDGKITVQDE 238

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +            VLDLC+APGGKT  +   + +  KV A D+ + +L  ++ N  R
Sbjct: 239 SAMLVAPTMNVEQGDLVLDLCSAPGGKTTHISEIMNNTGKVKAFDIHENKLNLVKDNAKR 298

Query: 286 LHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +   +  ++DA  +  +     DAVL+D PCS  G IR+ P++ +T++ + +      
Sbjct: 299 LGINNIECSKLDASKFNEELKEIADAVLIDVPCSGLGIIRKKPEIKYTKNMESVKDIVKI 358

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q++++     +VK GG +++S C+++K+++E+ +   +++ P            +     
Sbjct: 359 QKEIMKNAARYVKVGGTLLYSTCTINKKENEQNIDWFIKNFPQYTV-----EPIFYGKMD 413

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  G + I P+           MDGFF   L+R
Sbjct: 414 NIIYNENGTVTILPNKY---------MDGFFIAKLKR 441


>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           bercovieri ATCC 43970]
 gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           bercovieri ATCC 43970]
          Length = 431

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 215/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L   +       +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGLH-----NTISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSRYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +                P ++ +LPGF  G   VQDAS
Sbjct: 175 WLRVNRLHHSRSEYLELLKQADIDAAPHDAYPDALRLITPCAVSALPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V+L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVELLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A  +   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHAV-VRVGDGRTPEAWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+      ELV   +         
Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRH-SEAELVETGTTAAPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------KQNLPHPEDGDGFFYAKLIK 428


>gi|323489537|ref|ZP_08094764.1| ribosomal RNA small subunit methyltransferase B [Planococcus
           donghaensis MPA1U2]
 gi|323396668|gb|EGA89487.1| ribosomal RNA small subunit methyltransferase B [Planococcus
           donghaensis MPA1U2]
          Length = 450

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/468 (24%), Positives = 200/468 (42%), Gaps = 47/468 (10%)

Query: 1   MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK+     N R  +  +L  V  K+     LL           ++ +++ L+  I   TL
Sbjct: 1   MKNKKLQGNVRDAAFSILWAVENKQAYSNLLLHQTIESY---GIAAKNRGLLTEITYGTL 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
           +    +D  L+  L   +      ++ LLR+S+ QI+YLD +  +AVV  AVE AKR + 
Sbjct: 58  QHQMTLDYYLEPYLKGKIES---WVKILLRLSLYQIVYLDRIPAHAVVHEAVEIAKR-RG 113

Query: 117 NRHFAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
           +   A +VN +LR       R      +  ++I+  +  PEW   R    +G E+   ++
Sbjct: 114 HGGVASVVNGVLRSVQRSGVRSFNTISDPYEKISIETSHPEWMIRRWAEQFGLEKTREMA 173

Query: 170 DACISPLYIDLTVKFDIETWAH--------KLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
                     + V     T           +L A         L            F +G
Sbjct: 174 LENNKTPLQTVRVNTVRATVEEAIEMLESEELEAEPSKMIPECLVVTNGQPARTTTFEKG 233

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278
              +QD S+ +P         ++VLD+CAAPGGKT      + +   + ALD+ + +++ 
Sbjct: 234 FITIQDESSMLPAYALQVEPGMTVLDMCAAPGGKTTHIAEKMNNSGTLYALDLHQHKVKL 293

Query: 279 LRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           +  N +RL     +    D         ++ FD +LVDAPCS  G I+R PD+ +T+   
Sbjct: 294 IDENAERLGHTVIETTVGDGKQSVERFGEEKFDRILVDAPCSGLGVIKRKPDIKYTKKEQ 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D  +    Q +LL Q    +K  GI+V+S C++D  ++    ++ L+  P   E+  +  
Sbjct: 354 DFARLQEIQIELLDQAARLLKEDGILVYSTCTVDAVENRGTAERFLKEHP---EMEKIQV 410

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           A    + +       G++++ P           G DGFF  A +++ +
Sbjct: 411 ALPDLMGIKHT----GFVQVFPQDY--------GSDGFFIAAFKKIQK 446


>gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
 gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
          Length = 429

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 128/457 (28%), Positives = 217/457 (47%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R  ++  +  V+ +  SL+ +L      S  + +S +D+ L++ +   TLR L
Sbjct: 1   MKNNYNLRSHAAKAIGQVLDQGQSLSTVLP-----SLQKTISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+ +L  LL V + Q+LY  +  +AV+   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMAKPMTGKQRTLHYLLMVGLYQLLYTRIPAHAVLAETVEGAVALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ ELLQR A      + P W  +R++  Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEELLQRAANNDSRYLHPSWLLKRIQQAYPAQWEQIIDANNQKPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    E +   +    +               +P ++  LPGFA+G   VQDAS
Sbjct: 175 WLRVNRLHHTREDYLRLMEQAGIAAEPHAEYPDALRLLVPCAVTDLPGFADGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLGRVKENLQRLR 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+AE +   D      +C  K FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHAE-VKLGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+   ++ E +   L+  P    +   +          
Sbjct: 354 AEIIDAIWPHLKSGGVMVYATCSILPTENAEQITAFLQRHPDARLVETGDEQQPG----- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                            +        DGFF   L ++
Sbjct: 409 ----------------RQNLPHPEDGDGFFYAKLIKM 429


>gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
           FSL S4-171]
          Length = 446

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 207/467 (44%), Gaps = 44/467 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVREIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +++IA  + +P W  +R    YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIQDPVEKIAVETSLPVWLAKRWAKQYGNEQLREIGMAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN               L     S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTRNEFIDEALIVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
              +    +  + ++++ P  +        G DGFF  +LR++  P+
Sbjct: 408 ALPEKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445


>gi|295091953|emb|CBK78060.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium cf.
           saccharolyticum K10]
          Length = 472

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/453 (22%), Positives = 205/453 (45%), Gaps = 27/453 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR +++ +L  V+ K+     +L        ++ L ++++  ++ +V+ TL  L +ID +
Sbjct: 29  AREIAADILMEVLEKKQYSHVVLLNALK--KYQYLEKQERSFIKRVVDGTLERLMQIDFI 86

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++    + L + K +++ +LR+ V QI Y+D V D A  + AV+   + +        VN
Sbjct: 87  IESFSSTPLRKMKPTVRTILRMGVYQICYMDRVPDSAACNEAVKLTVK-RGFSGLKGFVN 145

Query: 126 SILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
            +LR ++R+K E+     +    +P+W   + E  YG++ V  ++++ +    + + +  
Sbjct: 146 GVLRNIARKKEEISWPDDSVRYCLPQWILGQWEPEYGRKAVQVMAESFLRERPLTVRMNL 205

Query: 185 D---IETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
           +    E     L            +  +   +  + +  L  FA+G   VQD S+S+   
Sbjct: 206 NQAPREEILESLREQGVEVIESGYSDQVVFLKNVDYLEGLDAFADGFLQVQDLSSSLAGD 265

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      V+D+C APGGK+  +         V   D+S+ ++  +  N+ R  L+  +
Sbjct: 266 AAGVKEGSHVIDVCGAPGGKSLHIAELLNGTGMVEVRDLSESKIALVEDNIRRSGLFNIE 325

Query: 293 IIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
               D   FD   ++  D ++ D PCS  G + R PD+      +  +  A  QR++L  
Sbjct: 326 ARVQDALEFDRDSEETADLLIADLPCSGLGIMGRKPDIRCNMTREQTLALAGLQREILSV 385

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
              +VKPGG +V+S C++D+ ++EE    +L + P     +        +  +      E
Sbjct: 386 VWRYVKPGGTMVYSTCTIDRAENEENAAWILENLPFEPVDLTGRIGEELAKTLCRDTRKE 445

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G++++ P             DGFF    RR  +
Sbjct: 446 GYVQLLPGFYPG--------DGFFISVFRRKEE 470


>gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
          Length = 427

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 208/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y +    +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMGAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +     L        +         
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424


>gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 426

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 119/452 (26%), Positives = 203/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A   +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGHSLSNALP-----AAQTTIKPRDYALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +  + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  STANQLMDKPLKGKQRVFHHLILVGLYQLSFMRIPAHAAVGETVEATKTLKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELL----QRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R + +L        AG    P W  + L+  Y  +    ++     +P+++ 
Sbjct: 115 NAVLRNYQRNQEQLDAQAVSHDAGKYGHPSWLLKLLQASYPTDWQQIVAANNTKAPMWLR 174

Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +        +       P  +  LPGF +G   VQDA+A +
Sbjct: 175 VNQHHHQRQDYLELLKESGIECEIHEEAQDAIKLLSPCDVTQLPGFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
                   +   +LD CAAPGGKTA         KV A+D    RL+++  NL RL L A
Sbjct: 235 SSDFLNAQDGELILDCCAAPGGKTAHILERAPNCKVVAIDCDDTRLQRVHDNLQRLQLNA 294

Query: 291 EDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             I     +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q ++L
Sbjct: 295 TVICGDARNPEEWWQGEKFDRILLDAPCSATGVIRRHPDIKWLRRAEDIHALAQLQSEIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++++ V+  L  +                  +  +  
Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENKDQVKAFLTRTCEA--------------SLIGSKL 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P   +        MDGF+   +++
Sbjct: 401 ENPGRQILPGERD--------MDGFYYAVIKK 424


>gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           intermedia ATCC 29909]
 gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           intermedia ATCC 29909]
          Length = 429

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 211/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----QKNISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ + + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRIFHYLIMIGLYQLVYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSRYLHPSWLLARIKQAYPDQWQQIVDANNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +                P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVSRLHHTRGEYLDLLKEAGIDAEPHAYYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVNENLQRLK 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A  +   D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q
Sbjct: 295 LHAV-VRVGDGRTPETWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+      ELV   +         
Sbjct: 354 SEIIEAIWPRLKKGGVMVYATCSILPEENQQQIAAFLQRH-SDAELVETGTNTAPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------KQNLPHPEDGDGFFYAKLFK 428


>gi|153809822|ref|ZP_01962490.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
 gi|149834000|gb|EDM89080.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
          Length = 450

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/465 (22%), Positives = 198/465 (42%), Gaps = 39/465 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M SG+N R +   +L  +  +       +      S ++ L ++++  +  +   TL + 
Sbjct: 1   MTSGINTREMIMEILLQIDEEGEHSHIAIRNAL--SKYQFLPKQERAFITRVCEGTLEYR 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID ++D      + + K  ++++LR +V Q+ ++D V D AV + AV+ A++ K   +
Sbjct: 59  ILIDYIIDSFSKIPVDKMKPPIREILRSAVYQLKFMDRVPDSAVCNEAVKLAQK-KGFYN 117

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
               VN +LR V+R+  EL             +    +PE   ER    YG+E    +  
Sbjct: 118 LKPFVNGVLRTVARQMDELEYPPREENLVRYLSVRYSMPEELVERWLADYGEETTEKMLA 177

Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221
             +    + +  +  + +                        +       I++L  F +G
Sbjct: 178 DFLEEKPVTVRCRTYLNSVDKICESLKNQGVKVEQAPYLPYAKRISGYNHILALDAFIQG 237

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT---ALDVSKRRLEK 278
              VQD S+ +  ++        V+D+CAAPGGK+  +           A D+S+ ++  
Sbjct: 238 KMVVQDVSSMLVAEIANPQKGDYVIDMCAAPGGKSLHIGDKMEGFGTVDARDISQYKVNL 297

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N+ RL+         DA  +    +   D VL D PCS  G I + P++ +   T  
Sbjct: 298 IEENIQRLNSINVQAKVQDATIFDVESECKADIVLADVPCSGYGVIGKKPEIKYRSTTQK 357

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
             +    QR +L +   +VKP G++VFS C++ K+++EE +   + + P  +E +     
Sbjct: 358 EEELVILQRTILDKAAEYVKPRGVLVFSTCTIAKEENEENMMWFMNNHPFKLESID---- 413

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +   ++    +  G++++ P +         G DGFF    RR 
Sbjct: 414 EFIPEELRSETTGLGYLQMLPGV--------HGTDGFFIARFRRK 450


>gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           micronuciformis F0359]
 gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           micronuciformis F0359]
          Length = 441

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/461 (23%), Positives = 186/461 (40%), Gaps = 44/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  + H L  V +       ++        F   + RD+     +V  TLR L  +D
Sbjct: 1   MNVREAAFHSLIAVCKDGAYSNIVVSKIIQKEKF---TDRDRRFYTELVYGTLRSLNYVD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++  +              +LR+ + Q+ ++D V   A  + AV+ A+R   N   AK 
Sbjct: 58  YIIGILSSRKKNSLDPVCLAVLRMGLYQLFFMDKVPPSAACNEAVKLARRF-GNEGMAKF 116

Query: 124 VNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN++LR          +       +  ++       W  E+    +G++  + +     +
Sbjct: 117 VNALLRNSLRQKERLAIPTFDENPVLHLSLTWHQQSWLIEKWITEFGRDHTVTLCRYFDT 176

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWV 225
              + +       D E     L+   +P                  I  L   A+G+  +
Sbjct: 177 VPELCIRANTERIDREGLMKLLSEKGIPCRPAEHAPDGIYAEKNPGIHKLTEIADGLGLI 236

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCN 282
           QD  + +   +        + D+CAAPGGKT  L   G K     A D+ + +L+ +  N
Sbjct: 237 QDEPSQLVAAIADPQEKTVIFDVCAAPGGKTTHLATLGTKSSTVYAFDIYEHKLKLIEDN 296

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           ++RL L        D            D VLVDAPCS  G +R  PD+ W +  +D+   
Sbjct: 297 VNRLGLKNVRTRLQDGTSVGEIYPEKADCVLVDAPCSGLGILRHKPDLRWRKTVEDLTVF 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q+K+L      VKPGG +V+S C++++ ++E++V     S     E+VP+ +A+  S
Sbjct: 357 PPLQKKILESAAKCVKPGGTLVYSTCTMNRAENEDIVNAFRISHK-DFEVVPVGNAFGFS 415

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            D         ++ I P           G+DGFF   LRR 
Sbjct: 416 KDSD-------YLSILPQD--------DGLDGFFIAKLRRK 441


>gi|300718674|ref|YP_003743477.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
 gi|299064510|emb|CAX61630.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
          Length = 429

 Score =  264 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 213/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L      +A + ++++D  L++ +    LR L
Sbjct: 1   MKKNTNLRSIAAQTIEKVVEQGQSLSNVLP-----AAQKSVAEKDAALLQELCYGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ ++  ++   +  K+ ++  L+ V + Q+++  +  +A +   VE A   K  + F
Sbjct: 56  PQLEWIIGQLMERPMTGKQRTIHFLVMVGLYQLIFTRIPAHAALAETVEGASSLKR-QQF 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPL 176
             L+N +    +R   E ++ +       +  +W  ERL+  +      +  ++    P+
Sbjct: 115 KGLINGVLRQFQRKQDELVQQMNVGDQKYLHSKWLLERLKRAWPNNWEAIVEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L           L       E P  +  LPGF +G   VQDAS
Sbjct: 175 WLRVNRQHHSRDAWLKLLQEAGKEAEPHPLHADALRLETPCPVSQLPGFDQGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N  S+LDLCAAPGGKT  ++ +  +  V A+D+ ++RL ++  NL RL+
Sbjct: 235 AQGCVALLDPQNGESILDLCAAPGGKTTHILEAAPQATVLAVDIDEQRLARINENLLRLN 294

Query: 288 LYAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE +   D      +C  K FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MTAE-VKVGDGCLPETWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L      +KPGG ++++ CS+  +++   V   L      +     ++ +       
Sbjct: 354 QQILDAIWPHLKPGGTLLYATCSILPEENHLQVAAFLERHEDAMLSDTGDANHP------ 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   +++ P             DGFF   L +
Sbjct: 408 -------GLQVFP--------APQDGDGFFYAKLLK 428


>gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens E str. JGS1987]
 gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens C str. JGS1495]
 gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens C str. JGS1495]
 gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens E str. JGS1987]
          Length = 442

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/459 (23%), Positives = 200/459 (43%), Gaps = 42/459 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR +   +L  V+         ++ ++  +    +  +D+ L+  +V  T+++   ID
Sbjct: 1   MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L   +   + +   S+  +LR ++ Q+ +LD V  YA+V+ AV   K      + AK 
Sbjct: 58  IILSSFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114

Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR   R + +  +                 W  E     YGKE  L I     +  
Sbjct: 115 VNGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKEYALRILRGLNTIP 174

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227
           Y+ + V     D +    +L                 + +   +I     + EG+  VQD
Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            SA +   LF    +  V+DLC+APG K   +   +++  KV A D+   +L  ++ N+D
Sbjct: 235 ESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENID 294

Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L   ++   DA     K     D VL+D PCS  G IR+ P++ W +  +D+ +   
Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+++L    ++++ GG +V+S C+L+K+++EEV+   +  +             +    
Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEV-----EKVFLGKA 409

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +  G + I P+           MDGFF   L++ 
Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439


>gi|332090533|gb|EGI95631.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
           3594-74]
          Length = 454

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 210/456 (46%), Gaps = 46/456 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
              N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L +
Sbjct: 28  KQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQ 82

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +    
Sbjct: 83  LDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKG 141

Query: 123 LVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      + 
Sbjct: 142 LINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPMW 200

Query: 180 LTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230
           L V       ++W   L+   +                P  + +LPGF +G   VQDASA
Sbjct: 201 LRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA 260

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
              +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL +
Sbjct: 261 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM 320

Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q 
Sbjct: 321 KAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS 379

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++  
Sbjct: 380 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCE 425

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +PE          ++    +   DGFF   L + 
Sbjct: 426 TGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 454


>gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis IBL 200]
 gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis IBL 200]
          Length = 429

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 197/447 (44%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     SA   + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A  +  P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAIATSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A         ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNE 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GEAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V+ K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock1-15]
 gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock1-15]
          Length = 429

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 198/447 (44%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     SA   + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A  +  P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A         ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V++K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|319899453|ref|YP_004159550.1| SUN-family protein [Bartonella clarridgeiae 73]
 gi|319403421|emb|CBI76989.1| SUN-family protein [Bartonella clarridgeiae 73]
          Length = 455

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 191/444 (43%), Positives = 262/444 (59%), Gaps = 9/444 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V   LL  V+ K   L+ L D EYG   +  LS RD++L RAI+   LR   +
Sbjct: 15  PGLVVRQVCVRLLGAVLDKHTPLSGLTDNEYGHPQYLGLSYRDRLLCRAILGAALRHRSQ 74

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I   L   L   LP + +SL  LL +S+ QILYLDV D+A +DLAV  AK D   R F+ 
Sbjct: 75  ITVALSRFLTRPLPSQAFSLHHLLHISITQILYLDVPDHAAIDLAVRVAKIDPRMRRFSG 134

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN+ILR  +RE   L  +   I  IP WF+  L + YG E+   I         +DLTV
Sbjct: 135 LVNAILRNFAREAAILRVQTPTIKAIPTWFERLLVSTYGAEKADQIVAIQSIIPPLDLTV 194

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D   WA +L  ++LP G +RL     SI  LPG+AEG WWVQD +A++P  L G ++ 
Sbjct: 195 KSDSAGWAKQLGGIVLPNGSVRLVSSAYSITDLPGYAEGAWWVQDVAAALPACLLGNIHG 254

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             V DLCA+PGGKTAQL++ GA VTA+D+S  RL++L+ N+DRL+         D   + 
Sbjct: 255 KKVADLCASPGGKTAQLVLQGADVTAIDISANRLKRLKENMDRLNFS-VRYWLGDVRQFH 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P +LFDAVL+DAPCSSTGTIRRHPD+LW +  DD+ K A  Q  LLL  I+ +K  G ++
Sbjct: 314 PDQLFDAVLLDAPCSSTGTIRRHPDILWIKTMDDVTKLAEMQYDLLLAAIALLKKNGRII 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           FSNCSL +++ E++V+K+L +    + L P+ +   +   MA  LS +G++R  P     
Sbjct: 374 FSNCSLAREEGEDLVEKILSTRH-DIVLEPILAE--EMGAMAHLLSIKGFLRTIPSDFCD 430

Query: 423 IDGVSS-----GMDGFFAVALRRL 441
            +  +      GMDGFFA   R++
Sbjct: 431 ENFNTEEKLFLGMDGFFAARFRKV 454


>gi|332996759|gb|EGK16384.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-272]
          Length = 429

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 213/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++H +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAHAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R + E            + P W  +RL+  Y  E+  +I++A      
Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++
Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +PE          ++    +   DGFF   L + 
Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429


>gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis Bt407]
 gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis Bt407]
 gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 429

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 197/447 (44%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     SA   + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A  +  P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAIATSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A         ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V+ K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus K5030]
 gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AN-5034]
 gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus Peru-466]
 gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus Peru-466]
 gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AN-5034]
 gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus K5030]
          Length = 427

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 209/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAIS-DACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L++ Y ++    +  +   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQDAYPQQWESIVDANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +     L        +         
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424


>gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 451

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 193/458 (42%), Gaps = 41/458 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L+ V          L      +    L  RD+  +  +V  T++    +D 
Sbjct: 13  PVRELAMQVLTEVHVDGAYANVALVRAMRAAK---LPDRDRRFLTELVYGTVKAGDTLDY 69

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L   L     R K  +++LLR+ + QI ++D V   A  + AVE AK+    R     V
Sbjct: 70  ILAKYLRDGKARIKPQIRELLRLGIYQIFFMDKVPASAACNTAVELAKKH-GKRGADSFV 128

Query: 125 NSI-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N++         R +       + +A  +  P W   R  + YG +R   +         
Sbjct: 129 NAVLRTAVREPERAAIPAGRSARLLALRAQHPFWMVNRWVSLYGYDRAEELCRCNNERAP 188

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDA 228
           + L V     D E    KL A               +     ++ +L    EG+  VQD 
Sbjct: 189 LSLRVNTLRIDREGLLEKLAAAGAQARPSATVPDGIVVTSHGTLDALAPLREGLCQVQDE 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +   + G    ++V+D CAAPGGKT      + +  K+ A DV + ++ ++  N  R
Sbjct: 249 SSMLVAHVLGAAPGMTVIDACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENNARR 308

Query: 286 LHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +   +   +DA +   +     D VL+DAPCS  G +RR PD  W R  +++      
Sbjct: 309 LGIDIIETWMLDAREIGARCAGTADRVLIDAPCSGFGVLRRKPDARWRRKPEELGALPKL 368

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+++L    + V+PGG +V+S C+++  ++E VVQ+ L   P  V              +
Sbjct: 369 QQEILAGAAAAVRPGGALVYSTCTMETAENEGVVQRFLELHPEFV-------LERAGAFL 421

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  + +  ++I P           G DGFF   ++RL
Sbjct: 422 PVQQTEDAMVQIFP--------TEDGGDGFFIARMKRL 451


>gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-Cer4]
 gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-Cer4]
          Length = 429

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 199/447 (44%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     SA   + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A  +  P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A +       ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKLGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V++K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13]
 gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13]
          Length = 442

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 108/459 (23%), Positives = 200/459 (43%), Gaps = 42/459 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR +   +L  V+         ++ ++  +    +  +D+ L+  +V  T+++   ID
Sbjct: 1   MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L   +   + +   S+  +LR ++ Q+ +LD V  YA+V+ AV   K      + AK 
Sbjct: 58  IILSSFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114

Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           +N +LR   R + +  +                 W  E     YGKE  L I     +  
Sbjct: 115 INGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVP 174

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227
           Y+ + V     D +    +L                 + +   +I     + EG+  VQD
Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            SA +   LF    +  V+DLC+APG K   +   +++  KV A D+   +L  ++ N+D
Sbjct: 235 ESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENID 294

Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L   ++   DA     K     D +L+D PCS  G IR+ P++ W +  +D+ +   
Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRILLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+++L    ++++ GG +V+S C+L+K+++EEV+   +  +             +    
Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEV-----EKVFLGKA 409

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +  G + I P+           MDGFF   L++ 
Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439


>gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400]
 gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400]
          Length = 427

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 201/450 (44%), Gaps = 35/450 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K ISL+  L  +         + +D+ L+  +    +R LP++D
Sbjct: 1   MNVRALAAKAIYEVLEKGISLSVALPDQQQHLQ----NGKDKALLAELCYGVMRQLPQLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L      K+  L QLL V   Q+ +  +  +A +    E A R        K+V
Sbjct: 57  KCVSDCLAKPFKGKQRILHQLLIVGCYQLYFTRIPAHAAISETAE-ACRQLRFDGLVKVV 115

Query: 125 NSILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           N +LR + R+  EL           P WF + L+  Y       I  +   P       +
Sbjct: 116 NGVLRNIQRQDSELNTDSDTLRFNTPAWFIKHLQQAYPDNWQDIIEQSHQRPPMWLRNNQ 175

Query: 184 FD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                         H ++A    +    L E  + + +LP F EG   VQD +A     L
Sbjct: 176 QSQTCDAYLAALAQHDISAQAGSSPNAILLESAKDVAALPDFMEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292
                +  VLD CAAPGGK+     +     + A+D  ++RL +++ NLDRLHL A    
Sbjct: 236 LAPTADELVLDACAAPGGKSCHLLELAPTINLVAVDFDQKRLARVQQNLDRLHLKAQLIH 295

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               D   +   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 GDAADIPSWWQGQQFDRILLDAPCSATGVIRRHPDIKWLRKNSDIEELANLQKQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + V++ L  +     LVP+        +    +S  GW
Sbjct: 356 QWLKPGGTLLYATCSILPQENSQQVEQFLART-ADASLVPI--------EQQAHISDIGW 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            +I P            MDGF+   L + I
Sbjct: 407 -QILPG--------QDNMDGFYYARLVKAI 427


>gi|85858797|ref|YP_460999.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721888|gb|ABC76831.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
          Length = 471

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/464 (22%), Positives = 197/464 (42%), Gaps = 41/464 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            ++ R ++  +L  +         LLD    D      S  D+ L+ ++V  TLR   R+
Sbjct: 21  KISPRSLAVEILDRIDTTGAFAEPLLDAFLRDHLLD--SAPDRHLLTSLVYGTLRMRGRL 78

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR---- 118
           D ++  +        +  ++ +LR ++ Q L++  +  +A+VD AVE AK     R    
Sbjct: 79  DWIIQQLYQGRFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAKLRYPGREKLV 138

Query: 119 -----HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
                +  + V++        +   ++ IA +   P W   R  + YG ER  ++  A  
Sbjct: 139 NALLRNAVRKVSANELSYPDFQKTPVEHIAVMHSHPPWLVRRWLSVYGTERCRSLCMANN 198

Query: 174 SPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF-------AEGVW 223
               + + V     D  T    L                  I   P          EG++
Sbjct: 199 QVPPVAIRVNSLKADRSTLKEILEHEGFTVSESSFSPDALLITDPPRHLRLTSTSREGLF 258

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            +QD ++ +  +L       ++LD+C   G KT  L   + +  ++ A+D+   +LE L 
Sbjct: 259 ILQDEASQLIGRLVAPAAGEAILDVCCGTGVKTTHLASLMSNQGRILAVDLYPAKLEALN 318

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
               R+ +   +I + DA     +     +FD +LVDAPCS  GT+RR+P++ W      
Sbjct: 319 RLSSRMGISNIEIRQADASTMEDETAFRNMFDRILVDAPCSGLGTLRRNPEIKWRLQPRA 378

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +   +  Q ++L +  +F+  GG +V+S C++  +++E ++ K L       ++   +++
Sbjct: 379 LPSYSRLQEQILNRAAAFLHRGGCLVYSTCTILPEENELLIGKFLSRHDEFRQIRLSDAS 438

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +         +   G+ R  PD        +SGMDGFFA  L +
Sbjct: 439 FA----YPTLVDENGFFRTAPD--------TSGMDGFFAALLTK 470


>gi|90406716|ref|ZP_01214909.1| sun protein [Psychromonas sp. CNPT3]
 gi|90312169|gb|EAS40261.1| sun protein [Psychromonas sp. CNPT3]
          Length = 434

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 213/456 (46%), Gaps = 44/456 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++ +L+ V+ +  SL+  L +       + L+ +D+ L++ +    LR LPR+D
Sbjct: 1   MNVRALAAQVLNLVVEQGQSLSQALPVL-----QKDLTPKDKALLQVLCYGVLRTLPRLD 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
                ++   L  K+     L+ V + Q+LY  +  +A V   V  AK   + +    +V
Sbjct: 56  FFCRSLMQKPLKGKQRVFHFLILVGIYQLLYTRIPSHAAVGETVNGAKALNK-QALKGMV 114

Query: 125 NSILRRVSREKIELLQRIAGI----SIIPEWFKERLENFYGKERV--LAISDACISPLYI 178
           N +LR   RE+  L+++           P W  +RL++ YGKE+   + + +   +P+++
Sbjct: 115 NGVLRNFLREQEALIEKADQQDTLLYCHPGWLVKRLQSAYGKEKAASIMLENNQQAPMWL 174

Query: 179 DLTV-KFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            +     D++++   L         A+          +    +  LPGF +G   VQD +
Sbjct: 175 RVNALHHDVKSYQALLTEKDLGSRLALDSENKNALCLDKATDVYQLPGFEDGWVSVQDGA 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRL 286
           A +            VLD CAAPGGKT   +       ++ A+D   +RL ++R NL+RL
Sbjct: 235 AQLAAHYLDAQPGDLVLDACAAPGGKTVHSLERQPKIAQMVAVDADDKRLVRVRENLERL 294

Query: 287 HLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           +L A  I         +   + FD +L DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 295 NLTATVIHGDASTPDVWWKGEKFDRILCDAPCSATGVIRRHPDIRWLRRDSDIKELVSLQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           + +L      +K GGI++++ CS+   +++  ++  L +     +LVPL+  Y  +    
Sbjct: 355 KSILNALWDKLKAGGILLYATCSILPDENDLQIKAFLETH-ADAKLVPLSKQYASTTV-- 411

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    ++ P+           MDGF+   L++
Sbjct: 412 -------GRQLLPND--------DTMDGFYYAKLQK 432


>gi|229541137|ref|ZP_04430197.1| sun protein [Bacillus coagulans 36D1]
 gi|229325557|gb|EEN91232.1| sun protein [Bacillus coagulans 36D1]
          Length = 447

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 203/466 (43%), Gaps = 46/466 (9%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     N R  +  LL  V +       LLD       F      D+ L+  I   TL+ 
Sbjct: 1   MSKERKNVREAALELLEAVEKNESYSNLLLDRYIEKYRFHG---PDRALLTEITYGTLQR 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              +D  L   L   +      ++ LLR+S+ Q++YLD + D A++  AVE AK+ + +R
Sbjct: 58  KQTLDYFLAPFLRKKIEN---WVRILLRLSLYQMVYLDKIPDRAIIFEAVEIAKK-RGHR 113

Query: 119 HFAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
             + +VN +LR       R  +E  + L+R++  +  P W   R    YG +    + +A
Sbjct: 114 GISGIVNGVLRAIQRGGLRSLKEIEDPLERLSVATSHPHWLVARWAEAYGYKTTKEMCEA 173

Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVW 223
            + P      V  +    +    KL           +          ++     F EG++
Sbjct: 174 NLIPPLQTARVNLNRASVDEVIEKLEREGFTVERSPVIPEAVRSRKGNLARSACFKEGLF 233

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLR 280
            +QD S+              +LD CAAPGGKT  +        +V ALD+   +++ ++
Sbjct: 234 TIQDESSMAVAYALCIQEGQRILDACAAPGGKTTHIAEKLEGTGEVVALDLHPHKVKLVQ 293

Query: 281 CNLDRLH---LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            N +RL    + A  +   DA     K  FD +LVDAPC+  G +RR PD+ + +  DDI
Sbjct: 294 ENAERLGTGQVEAIAMDSRDAGARFEKNTFDRILVDAPCTGFGVLRRKPDIKYAKTVDDI 353

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q  +L      +KP GI+VFS C++D++++E  ++  L+  P   E  PL+   
Sbjct: 354 HALKQVQLSILSGVSELLKPDGILVFSTCTVDREENEGTIETFLQEHP-EFEPYPLH--- 409

Query: 398 WKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +  AM    +G+ ++I P           G DGFF  ++R+  
Sbjct: 410 ---VPEAMESCVDGYRMQIFPQDF--------GGDGFFIASIRKKA 444


>gi|313901450|ref|ZP_07834907.1| sun protein [Thermaerobacter subterraneus DSM 13965]
 gi|313468278|gb|EFR63735.1| sun protein [Thermaerobacter subterraneus DSM 13965]
          Length = 488

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 172/442 (38%), Gaps = 38/442 (8%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83
            +   L      S    L  R++ L   +     R    +D  L         R    ++
Sbjct: 58  YVDQALARLLEGS---GLPARERALATELAYGVARRQGSLDWALARWARRPPERLDPPVR 114

Query: 84  QLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL--- 139
             LR+   Q+ +LD + D+A V  +VE  +R     + A  VN++LRR +R         
Sbjct: 115 VALRLGAYQLWHLDRIPDHAAVAESVELVRRH-GPGYAAGFVNAVLRRAARHGFPHEAVP 173

Query: 140 -------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET---- 188
                    +A     P W   R     G E    + +A      +   V          
Sbjct: 174 GAAEDLETHLALTLAHPRWLVRRWLERLGPEETRRLLEANNRIPPLSARVNMLRADPRSL 233

Query: 189 ----WAHKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                A  +           L+     S   L  F +G    QD S+ + V +       
Sbjct: 234 AAALAAQGVAVEPGRFLPEALRLGHGVSPAELEAFQQGALTWQDESSMLAVHVLDPRPGQ 293

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD+ AAPGGK+  +   +    +V A DV   RLEK+R    RL L + + + +D   
Sbjct: 294 LVLDVAAAPGGKSTHMAERMGDRGRVVACDVDPGRLEKVRAAARRLGLRSVEPLALDGRL 353

Query: 301 YCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
              +     D VL D PCS  G I R PD+ W +  +D+   A  Q +LL    + +KPG
Sbjct: 354 LPERFAGQADRVLADVPCSGLGVIARRPDLRWRKTPEDLKALAALQGELLRAAAACLKPG 413

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+S C+ + +++++VV+  LR        V L       +      +  GW+++ P 
Sbjct: 414 GVLVYSTCTTEPEENQQVVEGFLREGGDRFAAVDLRPRLPAPLRDEPG-TERGWLQLWPH 472

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
                     G+DGFF   L+R
Sbjct: 473 --------RHGVDGFFIACLQR 486


>gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens CPE str. F4969]
 gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens NCTC 8239]
 gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens D str. JGS1721]
 gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens CPE str. F4969]
 gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens D str. JGS1721]
 gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens NCTC 8239]
          Length = 442

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/459 (23%), Positives = 200/459 (43%), Gaps = 42/459 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR +   +L  V+         ++ ++  +    +  +D+ L+  +V  T+++   ID
Sbjct: 1   MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L   +   + +   S+  +LR ++ Q+ +LD V  YA+V+ AV   K      + AK 
Sbjct: 58  IILSSFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114

Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR   R + +  +                 W  E     YGKE  L I     +  
Sbjct: 115 VNGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVP 174

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227
           Y+ + V     D +    +L                 + +   +I     + EG+  VQD
Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            SA +   LF    +  V+DLC+APG K   +   +++  KV A D+   +L  ++ N+D
Sbjct: 235 ESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENID 294

Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L   ++   DA     K     D VL+D PCS  G IR+ P++ W +  +D+ +   
Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+++L    ++++ GG +V+S C+L+K+++EEV+   +  +             +    
Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEV-----EKVFLGKA 409

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +  G + I P+           MDGFF   L++ 
Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439


>gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH676]
 gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-ST24]
 gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           m1550]
 gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           ATCC 10876]
 gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           ATCC 10876]
 gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           m1550]
 gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-ST24]
 gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH676]
 gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 429

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 198/447 (44%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     SA   + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A  +  P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A         ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V++K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           F65185]
 gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock4-2]
 gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock4-2]
 gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           F65185]
 gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 429

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 198/447 (44%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     SA   + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A  +  P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A         ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKSGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V++K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102]
 gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102]
          Length = 487

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/498 (25%), Positives = 195/498 (39%), Gaps = 79/498 (15%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N R ++   L  V  K       LD          L  RD+ LV  +V  ++R    +D
Sbjct: 2   TNPRQLAFIALRDV-HKGAYADVALDRVLQKV---NLPDRDRRLVTELVYGSVRRQRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D    +   ++   L+ +L +   Q+ Y   +   A V+  V+ AK +         
Sbjct: 58  TLIDQFAKNKSHQQPQDLRTILHLGFYQLRYQERIPASAAVNTTVQLAKEN-GFSGLTGF 116

Query: 124 VNSILRRVSREKIELLQRIAG--------------------------------------- 144
           VN +LR+  R+  E   R AG                                       
Sbjct: 117 VNGLLRQYLRKAGEQGGRGAGGQRSRGAEEKDSLLVPVPQPPVPSTQAPVLNFDPLQLPE 176

Query: 145 --------ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKL 193
                   +   P+W  +      G      + +       IDL +      IE     L
Sbjct: 177 NPVERLGILHSFPDWIIQVWLEQLGLTETEQLCEWMNQSPTIDLRINPLCTSIEEVEAAL 236

Query: 194 NAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
            +V             +R      SI  LPGF EG W VQDASA +   L        V+
Sbjct: 237 QSVGLLVRRIPDLPQALRFMGNTGSIQKLPGFKEGWWTVQDASAQLVSHLLDPQPGEVVI 296

Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC- 302
           D+CAAPGGKT  +   +    K+ A D +  RL KL+ N  RL+L +  I   D+     
Sbjct: 297 DVCAAPGGKTTHIAELMADSGKIWACDRTASRLRKLQENSQRLNLQSIQIYTGDSRHSNQ 356

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            +   D VL+DAPCS  GT+ RH D  W +  + + + +  Q++LL    +FVK GG++V
Sbjct: 357 FQNTADRVLLDAPCSGLGTMHRHADARWRQTPESVRELSVLQKELLTHTSTFVKAGGVLV 416

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ C+L   ++EEV+   L  SP       +       +  +   +P+GW ++ P     
Sbjct: 417 YATCTLHPAENEEVISAFLAESPHWQ----IEPPRGIELAASAYSTPQGWFKVWPH---- 468

Query: 423 IDGVSSGMDGFFAVALRR 440
                  MDGF  V LR+
Sbjct: 469 ----RQDMDGFLMVRLRK 482


>gi|167768546|ref|ZP_02440599.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1]
 gi|167710070|gb|EDS20649.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1]
 gi|291560508|emb|CBL39308.1| ribosomal RNA small subunit methyltransferase RsmB
           [butyrate-producing bacterium SSC/2]
          Length = 447

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 195/460 (42%), Gaps = 39/460 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  +L  V +K       +        F    +RD+     +V  TL     ID 
Sbjct: 3   NPRECALDVLIKVDKKEELSHIAISNVLEKYQFS--EKRDRAFFTRLVEGTLERQITIDY 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           V D    + + + K  ++ LLR+ + QILY+D V D A  + AV+ AK+ +     +  V
Sbjct: 61  VADQFSKTKIRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKK-RGFSRLSGFV 119

Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N +LR +SR+K E+            ++    IPEW  +  +  Y  E V  I  + +  
Sbjct: 120 NGVLRNISRKKDEIQYPSREKNLETYLSVAYSIPEWIIKFFQKTYDNETVEKIIASYLEE 179

Query: 176 LYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQ 226
               L         E    +L A  +      L E    I        L  F EG  +VQ
Sbjct: 180 RKTTLCCLISKGGKEAVRKELEAEGVTVEDGSLIENAVKISDYDFLYRLKAFREGSCYVQ 239

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNL 283
           D S+ +  +L        V+DLC+APGGK+  +        +V + D+++ + + +  N+
Sbjct: 240 DESSMLCAKLASVQKEQFVMDLCSAPGGKSLYVADQLKGSGRVLSRDLTEYKTDLIEDNI 299

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           DR+     +    DA     +     D V+ D PCS  G + +  D+ +    + +    
Sbjct: 300 DRVGFTNMESEVFDARVLDEEHIEAADVVIADVPCSGLGIMGKKNDIKYHISEEGMKDLV 359

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR++L   + +VK GG +++S C+++  ++EE  + +L       E V +     K  
Sbjct: 360 KLQREILANAVQYVKHGGTLIYSTCTINPAENEENFRWILDHF--DFEAVDITKELPK-- 415

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           D+ +  + EG+I++ P +           DGFF   LRR 
Sbjct: 416 DLKIETAQEGFIQLLPGI--------HPCDGFFIGKLRRK 447


>gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B]
 gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B]
          Length = 427

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 208/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAIS-DACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y ++    +  +   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVDANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +     L        +         
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424


>gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           172560W]
 gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           172560W]
          Length = 429

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 198/447 (44%), Gaps = 40/447 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           + +       LL+     S    + ++D  L+  IV  T++    +D  L   L   +  
Sbjct: 1   MEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134
               ++ LLR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE  
Sbjct: 57  --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + ++R+A  +  P W  +   + YG E    + +  + P      V  D  T 
Sbjct: 114 PSVDEIKDPVERLAIATSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173

Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +         A         ++    ++     F +G   +QD S+ +  +      
Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
             +VLD CAAPGGKTA +        KV +LD+   ++  ++   +RL L   +   +D 
Sbjct: 234 GDAVLDSCAAPGGKTAHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +
Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V+S C+++K ++E+V++K L+  P   E     +   +  +       EG ++I
Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P             DGF+   LR+ +
Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429


>gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e]
 gi|224501376|ref|ZP_03669683.1| hypothetical protein LmonFR_02455 [Listeria monocytogenes FSL
           R2-561]
 gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165]
 gi|254831576|ref|ZP_05236231.1| hypothetical protein Lmon1_09493 [Listeria monocytogenes 10403S]
 gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e]
 gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165]
          Length = 444

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 207/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ YLD V ++A+++ A + AK    ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNM-GHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        E        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-DFTLEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442


>gi|308188325|ref|YP_003932456.1| ribosomal RNA small subunit methyltransferase B [Pantoea vagans
           C9-1]
 gi|308058835|gb|ADO11007.1| Ribosomal RNA small subunit methyltransferase B [Pantoea vagans
           C9-1]
          Length = 433

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 125/458 (27%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R +S+ L+  V+ K  SL   L      +A + LS +D  LV+ I    LR L
Sbjct: 1   MTKSINLRSLSAQLIERVVDKGESLNTALP-----AAQKKLSDKDSALVQEICFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++A++  ++   L  K+  L  L+ V + Q+ Y  V  +A +   V  A+  K     
Sbjct: 56  PQLEALIGRLMERPLTGKQRVLHYLIMVGLYQLEYTRVPAHAALAETVAGAEVLKRT-SL 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +    +R   E +  +Q      + P W  +RL++ + ++    +  +    P+
Sbjct: 115 KGLLNGVLRQFQRQREELLASIQDGPQRYLHPGWLLKRLQHAWPEQWQQIVEANNLRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +     + + W   L  +                  P  +  LPGF +G   VQD S
Sbjct: 175 WLRVNRQHHNRDAWLAMLVEIDRNAQPADDVPDALRLDAPAPVSQLPGFDQGWVTVQDLS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A     L    N   +LDLCAAPGGKT     I   A+V A+DV  +RL+++  NL RL 
Sbjct: 235 AQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPEAEVMAVDVDAQRLKRVEENLQRLG 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A D+ + D      +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKA-DVKQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPVELVPLNSAYWKSIDM 403
            ++L      +KPGG ++++ CS+  +++ + ++  L+       E              
Sbjct: 354 SEILDAIWPHLKPGGTLIYATCSILPEENHQQIEAFLQRQHDAQAE-------------- 399

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++  +P   +++ P         + G DGFF   L + 
Sbjct: 400 SLRGAPANGLQVFPQ--------AEGGDGFFYAKLIKK 429


>gi|239626556|ref|ZP_04669587.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516702|gb|EEQ56568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 447

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 195/454 (42%), Gaps = 31/454 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           GM  R +   +LS V+ K   +  +L+       ++ L + D+  +  +   TL +L +I
Sbjct: 9   GMENRGIVLDILSEVLDKGSFVHLVLNQALQ--KYQYLDKSDRAFITRVTEGTLEYLLQI 66

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D +++    +   + K  ++ LLR+SV QILY+D V D AV + AV+ A + +       
Sbjct: 67  DHIINKYSRTKTDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRFT-GLKG 125

Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            VN +LR +SREK   +    +    IP+W  +  E  YG  +   I+ + +      + 
Sbjct: 126 FVNGVLRTISREKASLVFDSPSLAYSIPQWMYDMWEKEYGSAKAEMIAASFLEDRPTWVR 185

Query: 182 VKFD---IETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASASI 232
                   E     L++  +    +       +I        L  F  G   VQDA+++ 
Sbjct: 186 CNLSRALREAILKSLDSQGVMVKELDCLPSVLAISGYDYMEGLECFQNGWIQVQDATSAF 245

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +L        ++D+CAAPGGK+      +     V A D+S ++   +  N+ R    
Sbjct: 246 VGELADPKEGDYIIDVCAAPGGKSLHLADKMKGTGMVEARDLSYQKTALIEENVARSGAA 305

Query: 290 AEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
               +  DA        +  D V+ D PCS  G I + PD+ +    D + + +  QR +
Sbjct: 306 NIKAVVWDALVPDEDAREKADIVIADLPCSGLGIIGKKPDIKYNMTMDKMRELSRLQRDI 365

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L     +VKPGG +V+S C++D  ++E     +  + P    L P++ +     D     
Sbjct: 366 LSVVWQYVKPGGTLVYSTCTIDPMENEGNAMWLSENFP----LEPVDLSGRLGEDFDEPS 421

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +G I+  P +           DGFF    RR+
Sbjct: 422 LKDGRIQFLPGI--------HPFDGFFISVFRRV 447


>gi|312113148|ref|YP_004010744.1| sun protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311218277|gb|ADP69645.1| sun protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 425

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 160/436 (36%), Positives = 242/436 (55%), Gaps = 13/436 (2%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  LL  V+    S            AF  +  RD+   RAI  + LR L +++ +
Sbjct: 2   ARRLAVFLLKSVLHDHQSFDEAFAGSSARDAFAAMESRDRAFARAIATIALRRLGQVEDM 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   L   L    +  + +L     Q+ ++DVA +A + LAVEQAK  + +RH   L+N+
Sbjct: 62  LARFLEKPLAADAFEARAILIAGATQLAFMDVAPHAAIGLAVEQAKASRFSRHLGGLINA 121

Query: 127 ILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           +LRRV+  K  +  ++ A +   P W  ER    YG+     I+ A +    +DL+VK D
Sbjct: 122 VLRRVNENKAAILSEQDAAVLNTPAWLWERWVAAYGEATAREITGAHLEEPPLDLSVKAD 181

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
             TWA KL   +LP G +RL      +  + G+AEG WWVQDA+A+IP  L G +    V
Sbjct: 182 AATWAAKLEGEVLPWGSVRLSH-KGRVEEIEGYAEGAWWVQDAAAAIPALLLGDIAGKRV 240

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
            DLCAAPGGKTAQL  +GA+VT++D+S  RL +L  N  RL L   +I++ +  D+ PK 
Sbjct: 241 ADLCAAPGGKTAQLAAAGAQVTSVDISASRLRRLGENAARLGLS-VEIVKANVGDWQPKD 299

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            F+A+L+DAPCS+TGTIRR+PD+ + +  +DI   A  Q++LL   ++ + PGG +VF+ 
Sbjct: 300 CFEAILLDAPCSATGTIRRNPDIAYLKTAEDIAALARVQKRLLAHALTLLAPGGTLVFAT 359

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CSL+ ++ E  +  +L      V L+P+++A          ++P G +R  P        
Sbjct: 360 CSLEPEEGEAQIAALLADR-ADVRLLPVDAAALNLP--PEVVTPNGCLRTLP-------F 409

Query: 426 VSSGMDGFFAVALRRL 441
            + GMDGFFA  L R+
Sbjct: 410 HAGGMDGFFAARLTRI 425


>gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3]
 gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3]
          Length = 427

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 210/453 (46%), Gaps = 44/453 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQNVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y  +   +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPEQWESIVEANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLTLLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +    +LV  +              
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLART-ANAQLVDSDPEQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +I P            MDGF+   L + 
Sbjct: 404 ---GRQILPG--------EEDMDGFYYAVLTKK 425


>gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens ATCC 13124]
 gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens ATCC 13124]
          Length = 442

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 110/459 (23%), Positives = 200/459 (43%), Gaps = 42/459 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR +   +L  V+         ++ ++  +    +  +D+ L+  +V  T+++   ID
Sbjct: 1   MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L   +   + +   S+  +LR ++ Q+ +LD V  YA+V+ AV   K      + AK 
Sbjct: 58  IILSSFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114

Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR   R + +  +                 W  E     YGKE  L I     +  
Sbjct: 115 VNGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVP 174

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227
           Y+ + V     D +    +L                 + +   +I     + EG+  VQD
Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            SA +   LF    +  V+DLC+APG K   +   +++  KV A D+   +L  ++ N+D
Sbjct: 235 ESAMLVAPLFDLRGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENID 294

Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L   ++   DA     K     D VL+D PCS  G IR+ P++ W +  +D+ +   
Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+++L    ++++ GG +V+S C+L+K+++EEV+   +  +             +    
Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEV-----EKVFLGKA 409

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +  G + I P+           MDGFF   L++ 
Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439


>gi|300721396|ref|YP_003710667.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627884|emb|CBJ88430.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Xenorhabdus
           nematophila ATCC 19061]
          Length = 437

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 113/456 (24%), Positives = 210/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  ++ V+ +  SL+ ++         + +S +D+ L++ +    +R L
Sbjct: 1   MKNTYNLRSIAAKAITQVLEQGQSLSSVIPEL-----QQRVSDKDKALLQELCFGVMRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+     L+ V + Q+ Y  +  +A +   V  A   K  +  
Sbjct: 56  PQLEWFMSQLMAKPLKGKQRIFHYLIMVGLYQLTYTRIPAHAALAETVNGAINLKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +    +R  +E +E   +     + P+W +ER++  Y +     I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQQELVERSNKHINQHLHPKWLQERIQKSYPQNWQTIIDANNQKPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229
           ++ +         +   L    +                P  + SLPGF +G   +QD S
Sbjct: 175 WLRVNQLHHTANEYLSLLENANIEAELDTKHPNAIRLLNPCPVHSLPGFNQGWVTIQDRS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A    +L    N   +LDLCAAPGGKT     I   +KV A+D+ ++RL++++ NL RL+
Sbjct: 235 AQGCAELLTPCNGEFILDLCAAPGGKTTHILEIAPKSKVLAIDIDEQRLKRVKENLQRLN 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A  +   D     ++   + FD +L+DAPCS+TG IRRHPD+ W R  +DI +    Q
Sbjct: 295 LHAV-VKTGDGRLPHEWAAGEQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIDQLVTLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L     ++K  G +V++ CS+  Q++ E ++  L+     V     +     +    
Sbjct: 354 SEILDAIWPYLKKNGTLVYATCSILPQENSEQIKAFLKRHTDAVLSETGSLEKPGT---- 409

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +I P++         G DGFF   L +
Sbjct: 410 ---------QIIPEV--------EGGDGFFYARLIK 428


>gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01]
 gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01]
          Length = 427

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 208/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAIS-DACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y ++    +  +   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVDANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFEKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +     L        +         
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424


>gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 446

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 44/467 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++         LL   D+ L+  +V  T +  
Sbjct: 1   MKKQKTVREIALELIIKIENNQSYSHLLINDALKKQKLNLL---DKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +++IA  + +P W  +R    YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIQDPVEKIAVETSLPVWLAKRWAKQYGNEQLREIGMAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN               L     S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTRNEFIDEALIVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293

Query: 282 NLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTANTMFAPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
              +    +  + ++++ P  +        G DGFF  +LR++  P+
Sbjct: 408 ALPEKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445


>gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           ATCC 23685]
 gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           ATCC 23685]
          Length = 430

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 218/457 (47%), Gaps = 45/457 (9%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+   N R +++  LS V+ +  SL+ +L      SA + LS++D+ L++ +   TLR 
Sbjct: 1   MKTTSYNLRAIAARTLSAVLDQGQSLSSVLP-----SAAQSLSEKDRALLQELCFGTLRV 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           LP+++ +L  ++  +L  K+  L  LL V + Q++Y  +  +A +   V+ A   K  + 
Sbjct: 56  LPQLEWILQQLMAKALTGKQRPLHYLLMVGLYQLVYTRIPPHAALAETVDGATALKRPQ- 114

Query: 120 FAKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISP 175
              L+N +LR+  R++       Q+ A   + P W  +RL++ Y ++   +  ++    P
Sbjct: 115 LKGLINGVLRQFQRQQEALLLQSQQHASHWLHPSWLLKRLQHAYPEQWPAIVEANNQRPP 174

Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           +++ +       + +   L    +               + + +  LPGF  G   VQDA
Sbjct: 175 MWLRVNRRHHTRDAYLTLLQQAGIEAVAHDHFPDAIRLLVAQPVTRLPGFEHGWVTVQDA 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   V L    +   +LDLC APGGKT  ++     A+V A+D  ++RL+++R NL RL
Sbjct: 235 SAQHCVDLLDPHDGEQILDLCCAPGGKTTHILEAAPKAQVLAVDADEQRLKRVRENLQRL 294

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              AE +   D      +   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 295 QQQAE-VRCGDGRTPDAWANGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAAL 353

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR++L      +KPGG++V++ CS+  Q++ E +   L                      
Sbjct: 354 QREILEAVWPLLKPGGVMVYATCSVLPQENREQILAFLAHHDDARL-------------A 400

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               + +  ++  P         S G DGFF   L +
Sbjct: 401 ETGDAQQPGLQYLPQ--------SEGGDGFFYAKLIK 429


>gi|261823202|ref|YP_003261308.1| 16S rRNA methyltransferase B [Pectobacterium wasabiae WPP163]
 gi|261607215|gb|ACX89701.1| sun protein [Pectobacterium wasabiae WPP163]
          Length = 429

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 127/456 (27%), Positives = 217/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++ ++  V+ +  SL+ LL +   D     +S +D+ L++ +    LR L
Sbjct: 1   MKSSYNLRSIAAKVVGQVLDQGQSLSALLPVHQRD-----VSDKDRALLQELCFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+ +L  L+ V + Q+ Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGAVALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++ EL+QR A      + P W   R+E+ Y       +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQEELMQREATNSSHYLHPSWLLARIEHAYPDHWQSVVDANNQRPPM 174

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDAS 229
           ++ +      +     L A                    P ++  LPGFA+G   +QDAS
Sbjct: 175 WLRVNRLHHTQEAYLDLLAQEGIEAFAHPDYADAIRLASPCAVDLLPGFAQGWATIQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V      +   +LDLCAAPGGKT  ++     + V A+D+ + RL ++R NL RL 
Sbjct: 235 AQGCVYWLEPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDETRLGRVRENLLRLQ 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           ++AE + + D      +C  ++FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 295 MHAE-VKQGDGRYPDSWCAGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           ++++      +KPGG +V++ CS+  Q++ + V   L        LV   ++        
Sbjct: 354 KEIIDAIWPHLKPGGTMVYATCSILPQENAQQVTDFLSRH-ADATLVDTGTSEIPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I++ P         + G DGFF   L +
Sbjct: 409 --------IQMLPH--------ADGGDGFFYAKLVK 428


>gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
           HY01]
 gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
           HY01]
          Length = 427

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 210/453 (46%), Gaps = 44/453 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQNVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y  +   +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPEQWESIVEANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQYHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +    +LV  +              
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLART-ANAQLVDSDP------------- 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +   +I P            MDGF+   L + 
Sbjct: 401 KQPGRQILPG--------EEDMDGFYYAVLTKK 425


>gi|50122921|ref|YP_052088.1| 16S rRNA methyltransferase B [Pectobacterium atrosepticum SCRI1043]
 gi|81643776|sp|Q6D000|RSMB_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|49613447|emb|CAG76898.1| Sun protein [Pectobacterium atrosepticum SCRI1043]
          Length = 429

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 210/457 (45%), Gaps = 46/457 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++ ++  V+ +  SL+ LL +   D     +S +D+ L++ +    LR L
Sbjct: 1   MKSSYNLRSIAAKVVGQVLDQGQSLSALLPIHQRD-----VSDKDRALLQELCFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+ +L  L+ V + Q+ Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGAVALKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +    +R   E ++     +   + P W   R+E+ Y       I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLQREATHSSHYLHPSWLLARIEHAYPNNW-RGIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V       E + + L    +                P ++  LPGF++G   VQDA
Sbjct: 174 MWLRVNRLHHTREAYLNLLMQGGIEAFPHTEYSDAIRLASPCAVDQLPGFSQGWATVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   V      +   +LDLCAAPGGKT  ++     + V A+DV + RL +++ NL RL
Sbjct: 234 SAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            ++AE + + D      +C  ++FD +L+DAPCS+TG IRRHPD+ W R   DI +    
Sbjct: 294 QMHAE-VKQGDGRYPDSWCEARVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVAL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+++L      +K GG +V++ CS+  Q++ + V   L        LV   ++       
Sbjct: 353 QKEILDAIWPHLKTGGTMVYATCSILPQENTQQVTGFLSRHADAA-LVDTGTSEIPG--- 408

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    I+I P         +   DGFF   L +
Sbjct: 409 ---------IQILPH--------ADSGDGFFYAKLVK 428


>gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254899481|ref|ZP_05259405.1| hypothetical protein LmonJ_06694 [Listeria monocytogenes J0161]
 gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818]
 gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900]
 gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900]
 gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818]
          Length = 444

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 207/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ YLD V ++A+++ A + AK    ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNM-GHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        E        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLTILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-DFTLEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442


>gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|46396778|sp|Q7MYI0|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 429

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 111/455 (24%), Positives = 211/455 (46%), Gaps = 42/455 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  ++ V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKNTYNLRSITAKAINQVLDQGQSLSTVLPKL-----QQNITDKDKPLLQELSFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK--RDKENR 118
           P+++ ++  +++  L  K+  L  LL V + Q+ Y  +  +A +   V  A   +  + +
Sbjct: 56  PQLEWIIGQLMVKPLKGKQRILHYLLMVGIYQLAYTRIPAHAALAETVNGAVTLKHSQLK 115

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP-LY 177
                V    +R   + +E  Q  +   + PEW   R++  Y ++    I+     P ++
Sbjct: 116 GLINGVLRQFQRQQLQLMECTQNNSSHHLHPEWLLTRIQKAYPQQWQQLINANNKKPPMW 175

Query: 178 IDLT-VKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASA 230
           + +  +    + +   L    +                P  +  LPGF +G   VQD SA
Sbjct: 176 LRVNRIYHSRDEYLTLLRKSGIDAEPAPKSPSAIRIISPCPVTILPGFDKGWVTVQDLSA 235

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
              V+L   +N   +LDLCAAPGGKT     I   ++V A+D+ ++R+++++ NL RL+ 
Sbjct: 236 QECVELLKPINGEKILDLCAAPGGKTTYILEIAPESQVVAVDIDEQRIKRVKENLKRLNC 295

Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +A  +   D      +   + FD +L+DAPCS+TG IRRHPD+ W R  +DI +    Q 
Sbjct: 296 HAT-VKTGDGRHPEHWAENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQS 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L     ++K  G +V++ CS+   ++ + +   L+           + A     +   
Sbjct: 355 EILDAIWPYLKKSGTLVYATCSILPDENCQQISSFLKRH---------SDAKLAGTETND 405

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            L      +I P++        +G DGFF   L +
Sbjct: 406 CLGK----QIIPEL--------NGGDGFFYARLTK 428


>gi|302874750|ref|YP_003843383.1| sun protein [Clostridium cellulovorans 743B]
 gi|307690635|ref|ZP_07633081.1| sun protein [Clostridium cellulovorans 743B]
 gi|302577607|gb|ADL51619.1| sun protein [Clostridium cellulovorans 743B]
          Length = 443

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 104/458 (22%), Positives = 192/458 (41%), Gaps = 40/458 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  +L+ V  +R     +++ E   S    +   D+ LV  IV  T+++   ID 
Sbjct: 3   NPRETAVIILNKVFNERGYSNIIINKELNKSNLENI---DKALVTEIVYGTIQYKYTIDK 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++D  +          +  +LR ++ QI YLD +  +AVV+ AVE +K+       +K +
Sbjct: 60  IIDHFVGRGTSSVDKKVVNILRSAIYQIRYLDKIPSFAVVNEAVELSKK-LSTVTSSKFI 118

Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N +LR   R+  E            +       W  ++  + YG      I         
Sbjct: 119 NGVLRNYIRKTNENFYNKNNLVDRLSFEYSFEPWMVKKFISQYGNNIAEKILKGLNERPS 178

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           I + V       +    +L A+        +          +SI + P F +G   VQD 
Sbjct: 179 ITVRVNSLKTTFDEAYEELEALGYSVEEGVIAPEAIRILKGKSIENNPLFIKGSITVQDE 238

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA I         +  + D+C+APGGKT  +       +K+ A D+   +L+ +  N+ R
Sbjct: 239 SAMIVASALEPSKDDVIFDMCSAPGGKTTHIAELSEDKSKIKAFDIFDHKLKLIEENIKR 298

Query: 286 LHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L + + +    DA  +        D VL+D PCS  G +R+ P++ +T++  D+ +    
Sbjct: 299 LGITSIETEIKDASIHDVLLDDSADKVLIDVPCSGLGIMRKKPEIKYTKNEKDLKELVKI 358

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR ++     +V+ GG++V+S C+L+ ++++E ++  L      +               
Sbjct: 359 QRDIMRNAAKYVRKGGVLVYSTCTLNLEENQENIRWFLDRHEDFMV-----EKVDFGKGE 413

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +    +  + I P+           MDGFF   L+R+
Sbjct: 414 NLIYGKDNTLTILPNKY---------MDGFFIAKLKRI 442


>gi|293374996|ref|ZP_06621291.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
           sanguinis PC909]
 gi|325843368|ref|ZP_08167951.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
           HGF1]
 gi|292646406|gb|EFF64421.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
           sanguinis PC909]
 gi|325489397|gb|EGC91770.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
           HGF1]
          Length = 444

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 208/457 (45%), Gaps = 40/457 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR ++   L+ ++         L+ +   S    L+ +D+  +  +V  TL+    ++ 
Sbjct: 3   NARELALQTLTDILINGAYSNHALNEQIEKS---DLTIQDKNFMTELVYGTLQHQQLLNF 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
                    +      ++ L+++++ QILYLD V ++A +  AV  AK+ +  +   KLV
Sbjct: 60  YATPFFNGKVKG---WIRILIQMTLYQILYLDSVPEHAAISEAVNIAKK-RGGQFNGKLV 115

Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N+ILR + R  +  LQ I       A  +  P W  +     +G E+   +++A    + 
Sbjct: 116 NAILREMMRNPLSNLQEIEDDAERLATKTSHPLWLIKLWIKQFGMEKTEQMANANNERVN 175

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWWVQDAS 229
           + + V     T       +       R        L     +++    F +G ++VQD S
Sbjct: 176 VTIRVNGVKGTKEELKQKLEEEGIQCRDGFLSPDALVITKGNVIKTKAFEQGWFYVQDES 235

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +  +     ++  VLD C+APGGKT     ++     V A D+   +++ +  N+ RL
Sbjct: 236 SMLVARALKPKHHTKVLDTCSAPGGKTTHVAEMMRQTGMVYAHDIYPHKIKLIEDNVKRL 295

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L    +   DA       P + FD+VLVDAPCS  G +RRHP+V  T+  +D+      
Sbjct: 296 GLKNVVVNLQDATKLTECYPSESFDSVLVDAPCSGLGILRRHPEVKITKKPEDLDGVMAI 355

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+++L    S VK GG +++S C++++++++++V+  LR  P       L     + ++ 
Sbjct: 356 QKEILKTVASLVKYGGTLLYSTCTVNRKENDKMVEWFLREHPEFKLDQTLVERLPEVLNE 415

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    G +++ P   +         DGFF   L+R
Sbjct: 416 QAST---GMVQLFPGDYQ--------TDGFFIACLKR 441


>gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
           FSL F6-596]
 gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
           FSL F6-596]
          Length = 446

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 205/467 (43%), Gaps = 44/467 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVREIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +++IA  + +P W   R    YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIEDPVKKIAVETSLPYWLARRWAEQYGIEQLREIGMAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN               L     S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTRNEFIDEALIVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFRLEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                   +  + ++++ P  +        G DGFF  +LR++  P+
Sbjct: 408 ALPAKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445


>gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
 gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
 gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
 gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
          Length = 444

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 207/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ YLD V ++A+++ A + AK    ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNM-GHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        E        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFTLEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442


>gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34]
 gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34]
          Length = 426

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 213/452 (47%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ ++  V+ +  SL+  L      +A + + +RD  L++ I    LR+LPR++
Sbjct: 1   MNVRATAAKVIYQVVDQGQSLSAALP-----AAQQDIRERDHALLQEICYGVLRWLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ Y+ +  +A V   V   K  K+ +    L+
Sbjct: 56  SITQALMDKPLKGKQRVFHHLILVGLYQLGYMRIPAHAAVAETVNATKTLKKPQ-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYID 179
           N+ILR   R++     + +   AG    P W  + L+  Y ++   +  ++   +P+++ 
Sbjct: 115 NAILRNYQRQQETLDAQAISHDAGKYGHPSWLLKLLKESYPEQFADICEANNTKAPMWLR 174

Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASI 232
           +  + +  + +   L+A  + T              P  +  LPGF++G   VQDA+A +
Sbjct: 175 VNRQHNTRDAYRALLDAEDIATELHPQAADALRLVSPCDVTQLPGFSDGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V       +  +LD CAAPGGKTA ++      KV A+D  + RL+++  NL RL+L A
Sbjct: 235 AVDYLQPKADELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +     FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q ++ 
Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++ + V+  L  +P  V L+  + A            
Sbjct: 355 DAMWLQLKPGGTLVYATCSITPQENCDQVKAFLARTPN-VTLIGSDPAKP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPG--------EESMDGFYYAVLTK 424


>gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116]
 gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116]
          Length = 427

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 210/453 (46%), Gaps = 44/453 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQNVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y  +   +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPEQWESIVEANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +    +LV  +              
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLART-ANTQLVDSDP------------- 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +   +I P            MDGF+   L + 
Sbjct: 401 KQPGRQILPG--------EEDMDGFYYAVLTKK 425


>gi|254976172|ref|ZP_05272644.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-66c26]
 gi|255315305|ref|ZP_05356888.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-76w55]
 gi|255517973|ref|ZP_05385649.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-97b34]
 gi|255651089|ref|ZP_05397991.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-37x79]
 gi|260684154|ref|YP_003215439.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile CD196]
 gi|260687813|ref|YP_003218947.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile R20291]
 gi|306520940|ref|ZP_07407287.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-32g58]
 gi|260210317|emb|CBA64638.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile CD196]
 gi|260213830|emb|CBE05814.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile R20291]
          Length = 441

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 207/460 (45%), Gaps = 43/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR V   +L  + +        ++  + +     +S  D+ L   ++   +     +D
Sbjct: 1   MDAREVGFKVLCDIEKNDNYSNIAINKHFKN---LEISDMDRGLATELIYGVIENKYYLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++ +    + +    ++  LR+   QIL+LD ++DYA V+  V+ +K+   ++  +  
Sbjct: 58  YIINKLSKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY--DKKSSGF 115

Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+ILR   R K  ++          ++       W  +   + +G+E    + +A    
Sbjct: 116 INAILRNEIRAKETIMDITEEDSVKYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEK 175

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQ 226
             I +         E    KL+ + +              E  ++I     F  G++ +Q
Sbjct: 176 PSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFTIQ 235

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ I  ++        VLD+C+APGGK+     L+ +  +V A D+ + +L+ +   +
Sbjct: 236 DISSMIVGKVINPKEGSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTV 295

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +RL L    +   DA +        FD VL D PCS  G IRR P++ + +  +++    
Sbjct: 296 NRLGLKNVFVERFDASEIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDIT 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+K+L     +VK GG +V+S C++   ++  +V   +  +    E VP++     ++
Sbjct: 355 SIQKKILENASKYVKVGGTLVYSTCTIQDVENINIVTSFVEENHN-FEFVPID-----TV 408

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ +    +G+++I P++         G+DGFF   L+R+
Sbjct: 409 NVDLDNQDKGYLKIYPNI--------HGIDGFFIAKLKRI 440


>gi|152977800|ref|YP_001343429.1| sun protein [Actinobacillus succinogenes 130Z]
 gi|150839523|gb|ABR73494.1| sun protein [Actinobacillus succinogenes 130Z]
          Length = 462

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 200/464 (43%), Gaps = 48/464 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             ++ R  ++ ++  V+ +  SL+ L+           L  +D  L++ I     R LPR
Sbjct: 24  KNLSVRAAAAQIILQVLDQGKSLSALIPET-----QLKLKPQDLPLLQEICFGICRVLPR 78

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + QILY  +  +A ++  V  AK  K + +F  
Sbjct: 79  LEWIIRLLMDKPLKGKTRIVHCLLLVGLYQILYTRIPQHAAINETVNAAKELKSD-NFRG 137

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           L+N +LRR  RE+  +         +  PEW   +L+  Y   R +  ++    P+++ +
Sbjct: 138 LLNGVLRRFLREQESVLATVDKHWQTNHPEWLVNKLKKIYPNWRDIIDANNRKPPMWLRV 197

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPV 234
                      +L A    T              P  +  LP FAEG   VQD  A    
Sbjct: 198 NRIHGSTENYRQLLAENDMTACTDENPHALRLESPMPVQRLPRFAEGWVTVQDVHAQWSG 257

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V A+DV + RL+++  NL RL+  A  
Sbjct: 258 ILLEPQNGELILDACAAPGGKTTHILEQAPQAKVVAVDVEENRLKRITENLARLNQQAIV 317

Query: 293 II-------------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           I                          FD +L+DAPCS++G IRRHPD+ W R   DI  
Sbjct: 318 ICGDAARPETWLEQAAQQISGRKSAVQFDRILLDAPCSASGVIRRHPDIKWLRQEQDIAP 377

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q ++L    + +KP G+++++ CS+  +++   + + L       +L+PL  +  +
Sbjct: 378 LVDIQYQILTALWATLKPNGVLLYATCSVLPEENGRQIARFLAEH-TDAQLMPLPFSPPQ 436

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            I            +  P          +G DGF+   LR+  Q
Sbjct: 437 EIGH----------QFLP--------TENGGDGFYYAKLRKTAQ 462


>gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b]
 gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b]
          Length = 428

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 211/457 (46%), Gaps = 45/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++ L+  V+ K  SL+ +L       A + LS +D  L++ +    +R L
Sbjct: 1   MKKNTNLRSLAAQLIERVVDKGESLSAILP-----GAQKSLSDKDGALLQELCFGVMRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++A++  ++   L  K+  L  L+ V + Q+LY  V  +A +   V  A+  K   + 
Sbjct: 56  PQLEALISKLMERPLTGKQRVLHYLIMVGLYQLLYTRVPPHAALAETVAGAEVLKR-ANL 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +    +R     +  + +     + P W  +RL+  +  E+   I +A      
Sbjct: 115 KGLLNGVLRQFQRQQEALVAEVDQGTQRHLHPAWLLKRLQTAWP-EQWQQIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDAS 229
           + L V       +TW   L             +        ++  LPGF +G   VQD S
Sbjct: 174 MWLRVNRQHHPRDTWLALLEETEKSAFVGDAPDSLRLEAPTAVGQLPGFDQGWVTVQDLS 233

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A     L    N  S+LDLCAAPGGKT  ++    +  V A+D+ ++RL ++R NL RL 
Sbjct: 234 AQRCALLLEPQNGESILDLCAAPGGKTTHILEIAPQAAVLAVDIDEQRLTRVRENLQRLG 293

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A D+ + D      +C  K FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 294 MQA-DVRQGDGRTPAEWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELASLQ 352

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R++L      +K GG ++++ CS+  +++ + +   L + P  +               A
Sbjct: 353 REILHAVWPRLKSGGTLLYATCSVLPEENHQQITAFLATHPDAIAE-------------A 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +    E   ++ P         + G DGFF   L + 
Sbjct: 400 LPHGQENGWQVFP--------ATDGGDGFFYAKLMKK 428


>gi|227328919|ref|ZP_03832943.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 429

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 215/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS  N R +++ ++  V+ +  SL+ LL +       R +S +D+ L++ +    LR L
Sbjct: 1   MKSSYNLRSIAAKVVGQVLDQGQSLSALLPVH-----QREVSDKDRALLQELCFGLLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+ +L  L+ V + Q+ Y  +  +A +   VE A   K+ +  
Sbjct: 56  PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLQYTRIPPHAALAETVEGAVTLKKPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPL 176
             L+N +    +R   E I+     +   + P W   R+E  Y      +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQEELIQREATHSSHYLHPSWLLARIERAYPNHWQGIVEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    E + + L    +                P ++  LPGF++G   VQDAS
Sbjct: 175 WLRVNRLHHTREAYLNLLVQEGIEAFPHAEYSDAIRLASPCAVDQLPGFSQGWATVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V      +   +LDLCAAPGGKT  ++     + V A+DV + RL +++ NL RL 
Sbjct: 235 AQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLSRVKENLLRLQ 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           ++AE + + D      +C  ++FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 295 MHAE-VKQGDGRYPDSWCEGRVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L     ++K GG +V++ CS+  Q++ + V   L       +L+   +         
Sbjct: 354 KEILDAIWPYLKTGGTMVYATCSILPQENAQQVTDFLTRH-ADAKLIDTGTREMPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I++ P         + G DGFF   L +
Sbjct: 409 --------IQMLPH--------ADGGDGFFYAKLVK 428


>gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           mollaretii ATCC 43969]
 gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           mollaretii ATCC 43969]
          Length = 431

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 217/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L   +       +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGLH-----NSISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPHHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNESRYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +      L         P ++ +LPGF  G   VQDAS
Sbjct: 175 WLRVNRLHHTRSEYLELLKQADIDAVPHDLYSDALRLITPCAVSALPGFELGWATVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL++++ NL RL 
Sbjct: 235 AQGCVDLLDPHNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLDRVKENLQRLK 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A  +   D     D+C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHAV-VRVGDGRTPEDWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+      ELV   +         
Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRH-SEAELVETGTTAVPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGFF   L +
Sbjct: 409 ----------------KQNLPHPEDGDGFFYAKLIK 428


>gi|126700200|ref|YP_001089097.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile 630]
 gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Clostridium
           difficile]
          Length = 441

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 207/460 (45%), Gaps = 43/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR V   +L  + +        ++  + +     +S  D+ L   ++   +     +D
Sbjct: 1   MDAREVGFKVLCDIEKNDNYSNIAINKHFKN---LEISDMDRGLATELIYGVIENKYYLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++ +    + +    ++  LR+   QIL+LD ++DYA V+  V+ +K+   ++  +  
Sbjct: 58  YIINKLSKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY--DKKSSGF 115

Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+ILR   R K  ++          ++       W  +   + +G+E    + +A    
Sbjct: 116 INAILRNEIRAKETIMDITEEDSVKYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEK 175

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQ 226
             I +         E    KL+ + +              E  ++I     F  G++ +Q
Sbjct: 176 PSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFTIQ 235

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ I  ++        VLD+C+APGGK+     L+ +  +V A D+ + +L+ +   +
Sbjct: 236 DISSMIVGKVINPKEGSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTV 295

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +RL L    +   DA +        FD VL D PCS  G IRR P++ + +  +++    
Sbjct: 296 NRLGLKNVFVERFDASEIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDIT 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+K+L     +VK GG +V+S C++   ++  +V   +  +    E VP++     ++
Sbjct: 355 SIQKKILENASKYVKVGGTLVYSTCTIQDVENINIVTFFVEENHN-FEFVPID-----TV 408

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ +    +G+++I P++         G+DGFF   L+R+
Sbjct: 409 NVDLDNQDKGYLKIYPNI--------HGIDGFFIAKLKRI 440


>gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ4037]
 gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ4037]
          Length = 427

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 207/452 (45%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y +    +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LP F +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPSFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +     L        +         
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424


>gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ3810]
 gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ3810]
          Length = 427

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 210/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+C L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSCALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERV-LAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y ++   +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +     L        +         
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424


>gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes Clip81459]
 gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 444

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWTDQYGIEKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        E        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFTLEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442


>gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262]
 gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262]
          Length = 446

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 123/467 (26%), Positives = 209/467 (44%), Gaps = 44/467 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW   R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIKDPVQKIAVETSLPEWLARRWADQYGLEKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN     A         L     S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIRAEQLIKELNDQGITATRNEFIDEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
              +    +  + ++++ P  +        G DGFF  +LR++  P+
Sbjct: 408 VLPEKLAQIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445


>gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 444

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 207/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG +++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDEVKDPVQKIAVETSLPEWLAKRWADQYGVQKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        +        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTQNEFIDEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L        DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHQDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFSLEPVTL--- 409

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + ++++ P  +        G DGFF  +LR++
Sbjct: 410 --PEKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKV 442


>gi|307822766|ref|ZP_07652997.1| sun protein [Methylobacter tundripaludum SV96]
 gi|307736370|gb|EFO07216.1| sun protein [Methylobacter tundripaludum SV96]
          Length = 435

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 114/450 (25%), Positives = 208/450 (46%), Gaps = 30/450 (6%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RLV++ +LS V++   SLT  LD  +        S +D+  ++A+     R   R+D
Sbjct: 1   MNTRLVAARVLSRVLQDGQSLTAALDNAFPSIE----SSKDRAFIQALCYGVCRQYHRLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +L  +L   L      ++ L  V + Q+ ++ V  +A V   V  A++    +     V
Sbjct: 57  FILSQLLDKPLK--DTDVKSLALVGLYQLKFMRVKPHAAVSETVLAARKKPWAKSLINAV 114

Query: 125 NSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERV-LAISDACISPLYIDLTV 182
                R          +    +   P+W  +++E  + ++ + + + +    P+ + + +
Sbjct: 115 LRTYLREQEGLEHKADKCQVAALSHPDWLIKQIEQDWPEQALNIFLENNQQPPMVLRVNL 174

Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQ 235
            K   E +   L    +    +           P  +  LPGF++G+  VQD +A +   
Sbjct: 175 SKTSREDYLQLLAGQDIAAEPVSFCRSAIRLDKPVPVDLLPGFSDGLVSVQDTAAQLAAG 234

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAED 292
           L        VLD+CAAPGGKTA ++ S  ++    A+D+ + R++++  NL RL+L+A  
Sbjct: 235 LLDVRPGHRVLDVCAAPGGKTAHILESQQQLKELVAVDIDESRMQRVSENLQRLNLHATL 294

Query: 293 I--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +     +   +   K FD +L+DAPCS+ G IRRHPD+   R  +DI +    Q+ +L  
Sbjct: 295 VVGDAANPASWWDGKPFDRILLDAPCSALGVIRRHPDIKLLRRAEDIGQLQALQKNILQA 354

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               + PGG+++++ CS+ KQ++E+ VQ  L      VEL   + +   +   A  ++  
Sbjct: 355 VWPLLAPGGLMLYATCSILKQENEQQVQAFLAEHSDAVELPLFSDSSLGT--TAWGINGA 412

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +I            S MDGF+   + +
Sbjct: 413 CGRQIL--------TGESAMDGFYYACISK 434


>gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858]
 gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194]
 gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503]
 gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262]
 gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017]
 gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes str. 4b H7858]
 gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503]
 gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262]
 gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194]
 gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017]
 gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes str. Scott A]
          Length = 444

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        E        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFTLEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442


>gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071]
 gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071]
 gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes FSL F2-208]
          Length = 444

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        E        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442


>gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 441

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 125/451 (27%), Positives = 198/451 (43%), Gaps = 39/451 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R +++ ++  V+ +  SL+  L              RD+ L+  I    +R LP++D 
Sbjct: 5   NLRALAASVVIQVIDQGHSLSQALPKAQSKLR----DARDKALLAEIAYGVMRQLPQLDT 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            L   L   L  KK  +  LL   + Q+ +  V  +AVV  +V  A R+        LVN
Sbjct: 61  QLRRCLQKPLSGKKRIIHGLLLAGLYQLKHTRVGSHAVVAESVN-ACREIGAPGMTGLVN 119

Query: 126 SILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--D 179
            +LR + R+      E     +     P WF +RL+  Y  +    +     +P     +
Sbjct: 120 GVLRALDRDMDALQAEQFDAPSVHYRHPGWFIKRLQQAYPDQWAAILDANNEAPPLWLRN 179

Query: 180 LTVKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
             ++   + +  +L      AV            P  +  LPGF +G   VQD SA I  
Sbjct: 180 NALQQSRDAYLQQLADAGVEAVAGEEQEAIRLPKPRDVTGLPGFPKGAVSVQDHSAQISG 239

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAE 291
           +L        VLD CAAPGGK+  ++    ++    ALDV   RL +++ NLDRL L A 
Sbjct: 240 RLLNAQPGERVLDACAAPGGKSCHILEQQPQLAELVALDVDPWRLTRVQQNLDRLGLTAT 299

Query: 292 --DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                  D   +   + FD +L+DAPCS+TG IRR+PD  W R  +DI + A  Q K+L 
Sbjct: 300 LKCGDGTDPQSWWDGQAFDRILLDAPCSATGVIRRNPDSKWLRRDEDIAQLAELQGKILR 359

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                +KPGG +V++ CS+   ++ + +Q  L+++P  +            I      + 
Sbjct: 360 ACWQMLKPGGTLVYATCSVLPDENVQQIQAFLQNTPDAM---------LDPIVAGEDDTT 410

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            GW ++ P           G DGF+   L +
Sbjct: 411 PGW-QLLP--------TVEGGDGFYYARLIK 432


>gi|187778898|ref|ZP_02995371.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC
           15579]
 gi|187772523|gb|EDU36325.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC
           15579]
          Length = 442

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 124/458 (27%), Positives = 206/458 (44%), Gaps = 42/458 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+  +L  V+ +      +L+ +   S    L   D+ L+  IV  TL++   +D 
Sbjct: 3   NAREVALDVLKAVLYEGAYSNIVLNKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   L + +     ++  +LR+++ QI YLD +  +A V+ AVE +K+   +  ++KLV
Sbjct: 60  IIQSYLKNPIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEMSKKI--SIKYSKLV 117

Query: 125 NSILRRVSREKIELLQR--------IAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           N +LR   R                 + I   P+W  +   + YG E    I        
Sbjct: 118 NGVLRNYIRTYKNKKFYDDRNNLEKFSFIYSYPKWLIKMFISQYGIEIAEKILKGLNERP 177

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227
            I + V     D +    KL+          +          ++I   P F EG   VQD
Sbjct: 178 NITVRVNNLKIDYDEAFEKLDEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGDITVQD 237

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            SA +            VLDLC+APGGKT  +   I + +KV A DV + +L  +  N  
Sbjct: 238 ESAMLVAPSMELTEESIVLDLCSAPGGKTTHISEIINNKSKVYAYDVHQNKLSLIEENAK 297

Query: 285 RLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL +   +    DA  +  +       VL+D PCS  G IR+ P++ WT++  +I     
Sbjct: 298 RLGIKNVETDVCDAAIFNKELKEIAHRVLMDVPCSGLGIIRKKPEIKWTKNEKEIKNIID 357

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QRK++  G S++K GGI+++S C+L+K+++EE +   L+      ++ PL      +I 
Sbjct: 358 IQRKIMNNGASYLKKGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI- 415

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  EG++ I P+           MDGFF   L++
Sbjct: 416 ---IYHKEGFVSILPN---------DKMDGFFIAKLKK 441


>gi|237795946|ref|YP_002863498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum Ba4 str. 657]
 gi|229261794|gb|ACQ52827.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum Ba4 str. 657]
          Length = 442

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+  +L  V+ +      +L  +   S    L   D+ L+  IV  TL++   +D 
Sbjct: 3   NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119
           ++   L + +     ++  +LR+++ QI YLD +  +A V+ AVE +K+           
Sbjct: 60  IIQSYLRNPIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119

Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                + +   +   +    L++ + +   P+W  +   + YG E    I         I
Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D +    KL           +          ++I   P F EG   VQD S
Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +            VLDLC+APGGKT  +   + + +KV A D+ + +L  +  N  RL
Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDIHQNKLSLIESNAKRL 299

Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   +    DA  +  K  +    VL+D PCS  G IR+ P++ WT++  +I      Q
Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           RK++  G S++K GGI+++S C+L+K+++EE +   L+      ++ PL      +I   
Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EG++ I P+           MDGFF   L++
Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441


>gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
          Length = 427

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 208/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y +    +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  ++ LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +  ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +     L        +         
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 406 -----QILPG--------EEDMDGFYYAVLSK 424


>gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 430

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 204/454 (44%), Gaps = 43/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R  ++ ++  V+ +  SL+ +L      +A   ++ RD+ L++ +   TLR+LPR+D
Sbjct: 1   MKTRAQAALVIQQVLDQGQSLSAVLP-----AAQEKVAPRDRALLQELCYGTLRWLPRLD 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A +  ++   L  K      L+ V + Q++Y  +  +A V   V   K  K       L+
Sbjct: 56  AAVGEMMDKPLKNKSRIFHYLILVGLYQLIYTRIPAHAAVAETVNAVKLLKGT-SLRGLI 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N +LR   R    +L RI  +       PEW  +RL   Y ++    I +A      + +
Sbjct: 115 NGVLRNFQRSAEVILLRIDRVPSIRLGHPEWLTKRLRQAYPEDW-EFIMEANNQRPPMWI 173

Query: 181 TVKFDIETWAHKLNA---------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
                 +     L                    L E P  +  LPGF  G   VQD +A 
Sbjct: 174 RNNSQRQGREQMLARMAEVGINAVAGQEGEDCILLERPCDVTKLPGFETGDCSVQDGAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288
              +L        VLD CAAPGGKTA L+        V A+D  + RL++++ NLDR+ L
Sbjct: 234 QAARLLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADENRLKRVQENLDRIGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A            + P+  FD +L+DAPCS+TG IRRHPD+ W R   DI + A  QR+
Sbjct: 294 QARVIHGDASTPELWWPQGQFDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRR 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L+   S +K GG ++++ CS+  +++ E ++  L ++P    LVPL++           
Sbjct: 354 ILIALWSKLKSGGTLLYATCSVLPEENREQIRAFLATTPDAT-LVPLHAQDTPDCP---- 408

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +  P   E        MDGF+   L +
Sbjct: 409 -----GRQFLPGEAE--------MDGFYYAKLIK 429


>gi|110803437|ref|YP_699027.1| sun protein [Clostridium perfringens SM101]
 gi|110683938|gb|ABG87308.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           perfringens SM101]
          Length = 442

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 201/459 (43%), Gaps = 42/459 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR +   +L  V+         ++ ++  +    +  +D+ L+  +V  T+++   ID
Sbjct: 1   MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L   +   + +   S+  +LR ++ Q+ +LD V  YA+V+ AV   K      + AK 
Sbjct: 58  IILSNFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114

Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR   R + +  +                 W  E     YGK+  L I     +  
Sbjct: 115 VNGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKDDALRILRGLNTIP 174

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227
           Y+ + V     D +    +L                 + +   +I     + EG+  VQD
Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            SA +   LF   ++  V+DLC+APG K   +   +++  KV A D+   +L  ++ N+D
Sbjct: 235 ESAMLVAPLFDLKDDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLTLIKENID 294

Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L   ++   DA     K     D VL+D PCS  G IR+ P++ W +  +D+ +   
Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+++L    ++++ GG +V+S C+L+K+++EEV+   +  +             +    
Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVEKNSDCEV-----EKVFLGKA 409

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +  G + I P+           MDGFF   L++ 
Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439


>gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
           FSL S4-378]
          Length = 446

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 123/467 (26%), Positives = 209/467 (44%), Gaps = 44/467 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW   R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIKDPVQKIAVETSLPEWLARRWADQYGLEKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN     A         L     S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIRAEQLIKELNDQGITATRNEFIDEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFESETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
              +    +  + ++++ P  +        G DGFF  +LR++  P+
Sbjct: 408 VLPEKLAQIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445


>gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
 gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
          Length = 430

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 203/455 (44%), Gaps = 43/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R  ++ ++  V+ +  SL+ +L      +A   ++ RD+ L++ +   TLR+LPR+D
Sbjct: 1   MKTRAQAALVIQQVLDQGQSLSAVLP-----AAQEKVAPRDRALLQELCYGTLRWLPRLD 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A ++ ++   L  K      L+ V + Q++Y  +  +A V   V   K  K       L+
Sbjct: 56  AAVNEMMDKPLKNKSRIFHYLILVGLYQLIYTRIPAHAAVAETVNAVKLLKGT-SLRGLI 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N +LR   R    +L RI  +       PEW  +RL   Y  +    I +A      + +
Sbjct: 115 NGVLRNFQRSAEVILLRIDRVPSIRLGHPEWLTKRLRQAY-HDEWEFIMEANNQRPPMWI 173

Query: 181 TVKFDIETWAHKLNA---------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
                 ++    L                    L E P  +  LPGF  G   VQD +A 
Sbjct: 174 RNNSQRQSRDAMLARMAEAGINAVAGEEGEDCILLERPCDVTKLPGFEVGDCSVQDGAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
               L        VLD CAAPGGKTA L+    K   V A+D  + RL++++ NLDR+ L
Sbjct: 234 QAAALLDPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLDRIGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A            + P+  FD +L+DAPCS+TG IRRHPD+ W R   DI + A  QR+
Sbjct: 294 TAKVIHGDAAAPEQWWPEGQFDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRR 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      +K GG ++++ CS+  +++ E ++  L ++    +LVPL+            
Sbjct: 354 ILNALWGKLKSGGTLLYATCSVLPEENREQIRAFLAATK-DAKLVPLHEQDTPDCP---- 408

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  +  P   E        MDGF+   L +L
Sbjct: 409 -----GRQFLPGEAE--------MDGFYYAKLVKL 430


>gi|222151048|ref|YP_002560202.1| hypothetical protein MCCL_0799 [Macrococcus caseolyticus JCSC5402]
 gi|222120171|dbj|BAH17506.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 434

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/462 (23%), Positives = 198/462 (42%), Gaps = 47/462 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R V+  +L  V+ +      L++          +   D+ L+  +V  TL+  
Sbjct: 1   MK--HNVRSVALEILDAVLTEGAYSNLLINEAIKKG---YVEPVDRALLTELVYGTLQRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++      + +++      +++L+ +S+ Q +YLD V D+A+++ AVE  KR + +  
Sbjct: 56  LTLEFYAAPYIKTNIKG---WMRRLILMSIYQSVYLDKVPDHAIINEAVEITKR-RGSMG 111

Query: 120 FAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN+ILR   R          + L+R++  +  P W  +     +G +  L +++  
Sbjct: 112 GANTVNAILRNFQRNPLRDLSEIKDDLKRLSVATSTPLWLIKHWNTHFGFDTTLEMAEEF 171

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWW 224
           ++     + V       E    +L                L      IV    F  G   
Sbjct: 172 LNYPDTTVRVNTTKITPEDAIKRLTEAGYTVEQSEIIPECLTIDGPPIVQHELFKHGFLS 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA---LDVSKRRLEKLRC 281
           VQDAS+ +   +     + ++LD C+APGGK   +     +       DV   +++ ++ 
Sbjct: 232 VQDASSMLVANVLDPQPDETILDACSAPGGKACHIAEKMNRTGHIDSHDVHPHKIDLIQY 291

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N+ RL L        DA     K  +D VLVDAPCS  G ++R P++ + +   DI    
Sbjct: 292 NITRLSLRNIHPSVHDATIPYDK-QYDRVLVDAPCSGFGVMKRKPEIKYDKTQKDIDTLW 350

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L    + VKPGG++V+S C++++ ++E VV   ++ +    E+ P+        
Sbjct: 351 PLQLEILKNAANAVKPGGVLVYSTCTIEQMENENVVYSFIKQN-EDFEIEPIELP----- 404

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                +  +  +++ P             DGFF   LRR  +
Sbjct: 405 ----VIGKQKLLQVLPQDF--------NSDGFFIAKLRRKCK 434


>gi|153938943|ref|YP_001391803.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum F str. Langeland]
 gi|152934839|gb|ABS40337.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum F str. Langeland]
          Length = 442

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+  +L  V+ +      +L  +   S    L   D+ L+  IV  TL++   +D 
Sbjct: 3   NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119
           ++   L + +     ++  +LR+++ QI YLD +  +A V+ AVE +K+           
Sbjct: 60  IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119

Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                + +   +   +    L++ + +   P+W  +   + YG E    I         I
Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEMAEKILKGLNERPNI 179

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D +    KL           +          ++I   P F EG   VQD S
Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +            VLDLC+APGGKT  +   + + +KV A DV + +L  +  N  RL
Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRL 299

Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   +    DA  +  K  +    VL+D PCS  G IR+ P++ WT++  +I      Q
Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           RK++  G S++K GGI+++S C+L+K+++EE +   L+      ++ PL      +I   
Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EG++ I P+           MDGFF   L++
Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441


>gi|331091584|ref|ZP_08340420.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330403611|gb|EGG83167.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 449

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/463 (20%), Positives = 187/463 (40%), Gaps = 38/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   ++ R +   +L  + ++      +L        ++ L ++++  +  +V  TL  L
Sbjct: 1   MTKQISEREIVLGILLEITKEGGYSHIVLRNTLE--KYQYLDKKERAFITRVVEGTLEHL 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++      + + K  ++ ++R SV QI Y+D V + AV + AV+ A++ K    
Sbjct: 59  IEIDYIINQFSKVKVNKMKPVIRTIIRNSVYQIKYMDSVPNSAVCNEAVKLAEK-KGFFQ 117

Query: 120 FAKLVNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
               VN +LR            +K  +++ ++    +P W  E     Y    +  I   
Sbjct: 118 LKGFVNGVLRNIDRNVSNIQYPDKKNMVEYMSIKYSMPIWILEEWGKSYDFSVIERILQG 177

Query: 172 CISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGV 222
            +      +         E    KL    +                   +  +  F EG 
Sbjct: 178 FLEEKGTTIRCNLNKISKEELVEKLKKENVRVKEHAYLPYALEISGYNYLGDMESFREGD 237

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
           + VQD S+ +  ++        V+D+C+APGGK   +         V A D++  ++  +
Sbjct: 238 FQVQDISSMLVSEIADPKKEDYVIDVCSAPGGKALHMADKLGETGYVEARDLTDYKVSLI 297

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R  +     ++ DA       K+  D VL D PCS  G + +  D+ +    +  
Sbjct: 298 EDNIERSGMKNIRAVKQDALICDEESKEKADIVLADLPCSGLGVLGKKTDIKYKMTRETQ 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    QRK+L    ++ KPGG +V+S C+++++++   V+  L+  P       L S  
Sbjct: 358 QELKKLQRKILSVVQNYTKPGGTLVYSTCTINEEENIGNVRWFLKQYPQ----YQLVSVE 413

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  D       EG +++ P +           DGFF    R+
Sbjct: 414 DRLCDELKPSVKEGCLQLLPGI--------HNSDGFFIAKFRK 448


>gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
           FSL J1-023]
          Length = 446

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 209/467 (44%), Gaps = 44/467 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW   R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIKDPVQKIAVETSLPEWLARRWADQYGLEKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        +        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIRAEQLIKELNDQGITVTRNEFIDEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
              +    +  + ++++ P  +        G DGFF  +LR++  P+
Sbjct: 408 VLPEKLAQIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445


>gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1]
 gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1]
          Length = 425

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 209/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L L       + +  RDQ L++ I    LR LPR++
Sbjct: 1   MNVRAAAANILFQVVDKGQSLSSALPL-----GQQQVKPRDQALLQEICFGALRILPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +V   ++   L  K+     L+ V + QI ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  SVASELMDKPLKGKQRVFHHLILVGIYQIGHMRIPAHAAVGETVEATKTLKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R + +L +      AG    P W  + L+  Y ++  + +      +P+++ 
Sbjct: 115 NAVLRNYQRNQEQLDEISVSHNAGKYGHPSWLLKLLQESYPQQWEMIVEANNTKAPMWLR 174

Query: 180 LTVKF-DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASI 232
           +  +  + + +   L    + +              P  + +LPGF +G   VQDA+A +
Sbjct: 175 VNHQHLNRDDYQALLKNEGIDSTAHSEALDALKLAAPCDVNNLPGFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA        ++V A+D  + RL+++  NL RL L A
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTKDSQVVAIDCDETRLKRVHDNLKRLKLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++ 
Sbjct: 295 KVVCGDARTPSEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIEALAELQREIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q+++E V+  L  +    +L+  +              
Sbjct: 355 DAMWQQLKVGGTLVYATCSITPQENKEQVKAFLART-DNAQLIDSDIDNP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L++
Sbjct: 404 ---GRQILPG--------EEDMDGFYYAVLKK 424


>gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14]
 gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14]
          Length = 426

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 209/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ ++  V+ +  SL+  L      +A + + +RD  L++ I    LR+LPR++
Sbjct: 1   MNVRATAAKVIYQVVDQGQSLSAALP-----AAQQDIRERDHALLQEICYGVLRWLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ Y+ +  +A V   V   K  K+ +    L+
Sbjct: 56  SITQALMDKPLKGKQRVFHHLILVGLYQLGYMRIPAHAAVAETVNATKTLKKPQ-LRGLI 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYID 179
           N+ILR   R++ EL        AG    P W  + L+  Y ++   +  ++   +P+++ 
Sbjct: 115 NAILRNYQRQQEELDTKAISHDAGKYGHPSWLLKLLKESYPEQFADICEANNTKAPMWLR 174

Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASI 232
           +  + +  + +   L+A  + T              P  +  LPGF++G   VQDA+A +
Sbjct: 175 VNRQHNTRDAYRALLDAEDIATELHPQAADALRLVSPCDVTKLPGFSDGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V          +LD CAAPGGKTA ++      KV A+D  + RL+++  NL RL+L A
Sbjct: 235 AVDYLQPKAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +     FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q ++ 
Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++ + V+  L  +     +    +   +         
Sbjct: 355 DAMWLQLKPGGTLVYATCSITPQENCDQVKAFLARTSDATLIGSDPAKPGR--------- 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 406 -----QILPG--------EESMDGFYYAVLTK 424


>gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168]
 gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168]
          Length = 440

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/450 (24%), Positives = 187/450 (41%), Gaps = 36/450 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R V+  +L  +  K      +L+ E    +     +RD+  +  +V   LR   R+D +
Sbjct: 4   SRKVAIKVLIEID-KGAYSNLVLNKELNKVS----DKRDRAFITELVYGVLRQKKRLDYM 58

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L       L +    +   LRV++ QI Y D V   A V   VE  K    +    K  N
Sbjct: 59  LSCFSKRPLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKSFTGH-GAVKFTN 117

Query: 126 SILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            +LR                  +  +A     PEW  +   N YG +    +        
Sbjct: 118 GVLRSYLRNKDKIIFPDRNQNPVNFLANYYSYPEWIIKEWINKYGFKDTERLCQYLNDSP 177

Query: 177 YIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
            + +            L                   +     +I  LP F +G + VQ  
Sbjct: 178 PVTVRYNRLQVDQKRFLEVFKKYNIEVESTTVPDCYVVNNFNTIKDLPLFKDGGFIVQGP 237

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           +A++   + G      VLD+ A PGGKT  L   + +  ++ ALD+ + +L+ +  N +R
Sbjct: 238 AATLAGFVLGPDPGNRVLDMSAGPGGKTTHLAELMNNRGEIIALDIYEHKLKLIEENCNR 297

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L +     I++D  DY  ++ FD VLVDAPC+  G +   P++ W R  +D+ K    Q+
Sbjct: 298 LGVNIVKTIKVDGRDYTSQEKFDMVLVDAPCTGLGLVAHKPEIKWNRTENDVKKLQEIQK 357

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK-SIDMA 404
            LL   +S V+ GG V++S C+L + ++EEVV +VL+ +   V  V +     +      
Sbjct: 358 SLLHNALSLVRDGGFVLYSTCTLTRAENEEVVNQVLQQTDFVVSPVNMEKRLSEIGFSGK 417

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
             ++PEG++   P          S  +GF+
Sbjct: 418 FKITPEGYLEFFP--------PESKTEGFY 439


>gi|255101745|ref|ZP_05330722.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-63q42]
          Length = 441

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/460 (21%), Positives = 207/460 (45%), Gaps = 43/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR V   +L  + +        ++  + +     +S  D+ L   ++   +     +D
Sbjct: 1   MDAREVGFKVLCDIEKNDNYSNIAINKHFKN---LEISDMDRGLATELIYGVIENKYYLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++ +    + +    ++  LR+   QIL+LD ++DYA V+  V+ +K+   ++  +  
Sbjct: 58  YIINKLSKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY--DKKSSGF 115

Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+ILR   R K  ++          ++       W  +   + +G+E    + +A    
Sbjct: 116 INAILRNEIRAKETIMDITEEDSVKYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEK 175

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQ 226
             I +         E    KL+ + +              E  ++I     F  G++ +Q
Sbjct: 176 PSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFTIQ 235

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ I  ++        +LD+C+APGGK+     L+ +  +V A D+ + +L+ +   +
Sbjct: 236 DISSMIVGKVINPKEGSFILDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTV 295

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +RL L    +   DA +        FD VL D PCS  G IRR P++ + +  +++    
Sbjct: 296 NRLGLKNVFVERFDASEIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDIT 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+K+L     +VK GG +V+S C++   ++  +V   +  +    E VP++     ++
Sbjct: 355 SIQKKILENASKYVKVGGTLVYSTCTIQGVENINIVTSFVEENHN-FEFVPID-----TV 408

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ +    +G+++I P++         G+DGFF   L+R+
Sbjct: 409 NVDLDNQDKGYLKIYPNI--------HGIDGFFIAKLKRI 440


>gi|315125135|ref|YP_004067138.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315013648|gb|ADT66986.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 431

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 208/457 (45%), Gaps = 41/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  N R +++  L  V+ K  SL   L       A + LS +D+ L++ I    LR+L
Sbjct: 1   MSNVSNVRALAAETLYNVVDKGASLNQELPF-----ASQGLSPKDKALLQQICYGVLRYL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P ++     ++   L  K+   Q LL V + Q+ ++ V  +A +   V  A +       
Sbjct: 56  PSLENYCQHLVEQPLKGKRRIFQFLLYVGIYQLQHMRVPPHAAISETVN-ALQQLRALGL 114

Query: 121 AKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS-P 175
             L+N+ILR   R++     +  Q    +   P WF ++++  Y       +       P
Sbjct: 115 KGLINAILRSFQRQQAELEEKAKQIPVCLYNHPNWFIKQVKEAYPDSWEDILEANQQQAP 174

Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           +++ +   +F  + ++  L A  +                P  + SLP F  G   VQDA
Sbjct: 175 MWLRVNQSQFSTQEYSEMLTANDIEHTLNPDFIDGIKLSKPRDVFSLPEFDTGACSVQDA 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287
           +A +  +     N  S+LD CAAPGGKT  ++  + A V ALD    RLE+++ NL+R+ 
Sbjct: 235 AAQLAARYLDPQNGDSILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLERIG 294

Query: 288 LYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L A+           +  ++ FD +L+D PCS+TG IRRHPD+ W R   DI   +  Q 
Sbjct: 295 LGADLQCGDASQPHTWWDEEQFDRILLDVPCSATGVIRRHPDIKWLRRASDINDLSTLQG 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      +KPGG +V++ CS+  Q++++ V K L ++    E +PL+S   K+     
Sbjct: 355 DILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANN-EDAEHIPLHSEDTKTTP--- 410

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                  +++ P             DGF+   L +  
Sbjct: 411 ------GLQLLPGE----------SDGFYYAKLVKKA 431


>gi|149912797|ref|ZP_01901331.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. AzwK-3b]
 gi|149813203|gb|EDM73029.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. AzwK-3b]
          Length = 427

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 139/440 (31%), Positives = 221/440 (50%), Gaps = 19/440 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     +AR  + HLL  V+ +   ++ L+       A   L   D+   + +   TLR 
Sbjct: 1   MSQPAPSARRSAVHLLDQVLGEGRLMSDLIS----SGALDRLDPADRARAQRLATDTLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           + R D +L   L    P     +  +LR+   ++  +    + VV+  V      +   +
Sbjct: 57  IERADRLLKRHLRKPPP---LHVFNILRLGTVELC-MGGDAHGVVNDLVALVGSHRRYGN 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              L+N++LR+++ +       +  +  +P W +E L + +G   V  +  A  +   +D
Sbjct: 113 LKGLINAVLRKMAADGPGTWNDL-RVPRLPRWLREPLVSAWGAGAVAQMEQAQFAGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LT + D    A +L   +LPTG +RL +    + +LPG+  G WWVQDA+A++PV++   
Sbjct: 172 LTARGDAVALAERLQGTLLPTGSVRLSDA-GQVSALPGYTSGDWWVQDAAAALPVRVLDP 230

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             + +VLDLCAAPGGKT QL  +GA VTALD+S++R+ ++R NL+R    A  I   DA 
Sbjct: 231 QPHEAVLDLCAAPGGKTLQLCAAGANVTALDLSEKRMARVRENLERCGYSANCI-TGDAL 289

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
           ++     +DAVL+DAPCS+TGTIRRHPD+ + +D  +       Q  +L   +S +KPGG
Sbjct: 290 EHA-GGPYDAVLLDAPCSATGTIRRHPDLPFAKDGSEFGALIALQAAMLDHALSLLKPGG 348

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +VF  CSL   + E  V + L   P     V   +           ++ EG +R+ PD 
Sbjct: 349 RLVFCTCSLLPDEGECQVDEALGRHPG--LSVDRGAVAGLPGIDPAWITDEGGLRLRPDH 406

Query: 420 LEKIDGVSSGMDGFFAVALR 439
                    GMDGF+   LR
Sbjct: 407 W----PDLGGMDGFYIACLR 422


>gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK]
 gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK]
          Length = 431

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 210/452 (46%), Gaps = 38/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ ++  V+ +  SL+  L      +A + + +RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAAQVVFQVVDQGQSLSAALP-----AAQQNIRERDHALLQEICYGVLRWLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   V   K  K+ +    L+
Sbjct: 56  SITTHLMDKPLKGKQRVFHHLILVGLYQLGHMRIPAHAAVAETVNATKDLKKTQ-LRGLI 114

Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYID 179
           N+ILR   R++ +     +   AG    P W  + L+  Y ++   +  ++   +P+++ 
Sbjct: 115 NAILRNYQRQQEQLDAQSVSHDAGKYGHPGWLLKMLKASYPEQLEAIVTANNTKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   LN V + TG             P  +  LPGFA+G   VQD +A +
Sbjct: 175 VNRQHHTRDEYRALLNDVGIETGLHPEAADALRLLSPCDVSKLPGFADGWSSVQDGAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYA 290
            V       +  +LD CAAPGGKTA ++       V A+D  +RRL ++  NL RL L A
Sbjct: 235 AVDFLQPQADELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVHENLARLKLDA 294

Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      D+   + FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q ++ 
Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAILQAEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++ E V+  L  +         ++        A +  
Sbjct: 355 DAMWLQLKSGGTLVYATCSITPQENSEQVKAFLART--------ADATLINRGQEADSDV 406

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +   +I P          S MDGF+   L++
Sbjct: 407 EQPGRQILPG--------ESDMDGFYYAVLQK 430


>gi|317498698|ref|ZP_07956990.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894040|gb|EFV16230.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 447

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 113/460 (24%), Positives = 195/460 (42%), Gaps = 39/460 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  +L  V +K       +        F    +RD+     +V  TL     ID 
Sbjct: 3   NPRECALDVLIKVDKKEELSHIAISNVLEKYQFS--EKRDRAFFTRLVEGTLERQITIDY 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           V D    + + + K  ++ LLR+ + QILY+D V D A  + AV+ AK+ +     +  V
Sbjct: 61  VADQFSKTKIRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKK-RGFSRLSGFV 119

Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N +LR +SR+K E+            ++    IPEW  +  +  Y  E V  I  + +  
Sbjct: 120 NGVLRNISRKKDEIQYPSREKNLETYLSVAYSIPEWIIKFFQKTYDNETVEKIIASYLEE 179

Query: 176 LYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQ 226
               L         E    +L A  +      L E    I        L  F EG  +VQ
Sbjct: 180 RKTTLCCLISKGGKEAVRKELEAEGVTVEDGSLIENAVQISDYDFLYRLKAFREGSCYVQ 239

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNL 283
           D S+ +  +L        V+DLC+APGGK+  +        +V + D+++ + + +  N+
Sbjct: 240 DESSMLCAKLASVQKEQFVMDLCSAPGGKSLYVADQLKGSGRVLSRDLTEYKTDLIEDNI 299

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           DR+     +    DA     +     D V+ D PCS  G + +  D+ +    + +    
Sbjct: 300 DRVGFTNMESEVFDARVLDEEHIEAADIVIADVPCSGLGIMGKKNDIKYHISEEGMKDLV 359

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR++L   + +VK GG +++S C+++  ++EE  + ++       E V +     K  
Sbjct: 360 KLQREILANAVQYVKHGGTLIYSTCTINPAENEENFRWIIDHF--DFEAVDITKELPK-- 415

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           D+ +  + EG+I++ P +           DGFF   LRR 
Sbjct: 416 DLKIETAQEGFIQLLPGI--------HPCDGFFIGKLRRK 447


>gi|255656560|ref|ZP_05401969.1| ribosomal RNA small subunit methyltransferase [Clostridium
           difficile QCD-23m63]
 gi|296449988|ref|ZP_06891752.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           difficile NAP08]
 gi|296878369|ref|ZP_06902377.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           difficile NAP07]
 gi|296261258|gb|EFH08089.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           difficile NAP08]
 gi|296430667|gb|EFH16506.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           difficile NAP07]
          Length = 441

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 206/460 (44%), Gaps = 43/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR V   +L  + +        ++  + +     +S  D+ L   ++   +     +D
Sbjct: 1   MDAREVGFKVLCDIEKNNNYSNIAINKHFKN---LEISDIDRGLATELIYGVIENKYYLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++ +    + +    ++  LR+   QIL+LD ++DYA V+  V+ +K+   ++  +  
Sbjct: 58  YIINKLSKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY--DKKSSGF 115

Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+ILR   R K  ++          ++       W  +   + +G+E    + +A    
Sbjct: 116 INAILRNEIRAKETIMDITEEDSVKYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANSEK 175

Query: 176 LYIDL---TVKFDIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQ 226
             I +    +K   E    KL+ + +              E  ++I     F  G++ +Q
Sbjct: 176 PSIYIRTNMLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFTIQ 235

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ I  ++     +  VLD+C+APGGK+     L+ +  +V A D+ + +L+ ++  +
Sbjct: 236 DISSMIVGKVINPKEDSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLIKSTV 295

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +RL L    +   DA +        FD VL D PCS  G IRR P++ + +  +++    
Sbjct: 296 NRLGLKNVCVERFDASEIDENSISKFDYVLADVPCSGLGIIRRKPEIKY-KKEEELKDIT 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+K+L     +VK GG +V+S C++   ++  +V   +  +               ++
Sbjct: 355 SIQKKILENASRYVKVGGTLVYSTCTIQDDENINIVASFVEENHNF------EFDSIDTV 408

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ +    +G+++I P++         G+DGFF   L+R+
Sbjct: 409 NVDLDNQDKGYLKIYPNI--------HGIDGFFIAKLKRI 440


>gi|148380461|ref|YP_001255002.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931256|ref|YP_001384684.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936344|ref|YP_001388205.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. Hall]
 gi|168180610|ref|ZP_02615274.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum NCTC 2916]
 gi|170756128|ref|YP_001782050.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum B1 str. Okra]
 gi|148289945|emb|CAL84058.1| putative ribosomal RNA methyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152927300|gb|ABS32800.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932258|gb|ABS37757.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A str. Hall]
 gi|169121340|gb|ACA45176.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum B1 str. Okra]
 gi|182668623|gb|EDT80602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum NCTC 2916]
          Length = 442

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+  +L  V+ +      +L  +   S    L   D+ L+  IV  TL++   +D 
Sbjct: 3   NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119
           ++   L + +     ++  +LR+++ QI YLD +  +A V+ AVE +K+           
Sbjct: 60  IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119

Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                + +   +   +    L++ + +   P+W  +   + YG E    I         I
Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D +    KL           +          ++I   P F EG   VQD S
Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +            VLDLC+APGGKT  +   + + +KV A DV + +L  +  N  RL
Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRL 299

Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   +    DA  +  K  +    VL+D PCS  G IR+ P++ WT++  +I      Q
Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           RK++  G S++K GGI+++S C+L+K+++EE +   L+      ++ PL      +I   
Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EG++ I P+           MDGFF   L++
Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441


>gi|290477163|ref|YP_003470078.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
           SS-2004]
 gi|289176511|emb|CBJ83320.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
           SS-2004]
          Length = 428

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/455 (23%), Positives = 211/455 (46%), Gaps = 43/455 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +  V+ +  SL+ ++         + +S +D+ L++ +    +R L
Sbjct: 1   MKNTYNLRNIAAKAIHQVLEQGQSLSTVIPEL-----QQRVSDKDKALLQELCFGVIRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   L  K+     L+ V + Q+ Y  +  +A +   V  A   K  +  
Sbjct: 56  PQLEWFIGQLMAKPLKGKQRIFHYLIMVGIYQLTYTRIPAHAALAETVNGAISLKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAGISII--PEWFKERLENFYGKERVLAIS-DACISPLY 177
             L+N +LR+  R++  L++++  +S    P+W  + ++  Y ++    I  +    P++
Sbjct: 115 KGLINGVLRQFQRQQQTLVEQVNNVSCHLHPKWLLDHIQKAYPQDWQKIIDANNQKPPMW 174

Query: 178 IDLTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASA 230
           + +         +   L    +                P  + +LPGF +G   +QD SA
Sbjct: 175 LRVNQRYHSANQYLALLQEANIDAELDENHPSAIRLLNPCPVNTLPGFDQGWVTIQDRSA 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
               +L    +  S+LDLCAAPGGKT     I   +KV A+D+ ++R+++++ NL RL+L
Sbjct: 235 QGCAELLTPCDGESILDLCAAPGGKTTHILEIAPKSKVLAVDIDEQRIKRVKENLQRLNL 294

Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +A  +   D     ++   + FD +L+DAPCS+TG IRRHPD+ W R  +DI +    Q 
Sbjct: 295 HAV-VKTGDGRFPHEWATGEQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIDQLVTLQT 353

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L     ++K  G +V++ CS+   ++ + ++  L                        
Sbjct: 354 EILDAIWPYLKKHGTLVYATCSILPHENSQQIKAFLGRHTDAAL-------------SDT 400

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +  I+I P         ++G DGFF   L +
Sbjct: 401 GTLDKPGIQIIP--------ETTGGDGFFYARLTK 427


>gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes HCC23]
 gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria
           monocytogenes HCC23]
 gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
           monocytogenes L99]
          Length = 444

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 121/463 (26%), Positives = 208/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG +++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIKKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        E        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442


>gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           kristensenii ATCC 33638]
 gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           kristensenii ATCC 33638]
          Length = 429

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 215/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L   + +     +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPRLHKN-----ISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIKQLMARPMTGKQRIFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSHYLHPSWLLARIKQAYPDQWQQIVDANNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +                P ++ +LPGF  G   VQDAS
Sbjct: 175 WLRVSRLHNSRSKYLELLKQANIDALPHDFYPDAVRLITPCAVSTLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLK 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A D+   D     ++C  + FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q
Sbjct: 295 LHA-DVRVGDGRIPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+      ELV   +         
Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRH-SEAELVETGTTSAPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                            +        DGF+   L +
Sbjct: 409 ----------------RQNLPHPEDGDGFYYAKLIK 428


>gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195]
 gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195]
 gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678]
          Length = 428

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 1   MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL +   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y ++    I  +   P     +  
Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +      +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 176 LFQSRSEYLATLAELEIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 236 LTPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +              + I           
Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425


>gi|226949860|ref|YP_002804951.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843504|gb|ACO86170.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A2 str. Kyoto]
          Length = 442

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+  +L  V+ +      +L  +   S    L   D+ L+  IV  TL++   +D 
Sbjct: 3   NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119
           ++   L + +     ++  +LR+++ QI YLD +  +A V+ AVE +K+           
Sbjct: 60  IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119

Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                + +   +   +    L++ + +   P+W  +   + YG E    I         I
Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D +    KL           +          ++I   P F EG   VQD S
Sbjct: 180 TVRVNNLKIDYDEAFEKLGKYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +            VLDLC+APGGKT  +   + + +KV A DV + +L  +  N  RL
Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRL 299

Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   +    DA  +  K  +    VL+D PCS  G IR+ P++ WT++  +I      Q
Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           RK++  G S++K GGI+++S C+L+K+++EE +   L+      ++ PL      +I   
Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EG++ I P+           MDGFF   L++
Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441


>gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36]
 gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36]
          Length = 431

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 209/455 (45%), Gaps = 41/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R  ++ +L  V+ K  SLT  L +     A +LL  +D+ L++ I    LR+LPR++
Sbjct: 1   MKTRASAAKVLYQVVDKGQSLTTALPI-----AQQLLPAKDRALLQEICYGVLRWLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +   ++   L  K+  +  L+ V + Q+ Y+ +  +A V   V  A +  ++   + LV
Sbjct: 56  FMSRQLMSKPLIGKQRPVHFLILVGLYQLKYMRIPAHAAVAETVN-AIKVLKSPKLSGLV 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N+ILR   R++ +L        A     P W  +R++  Y K+    +       P++I 
Sbjct: 115 NAILRNYQRQQDDLETLADGNDACKFGHPGWLIKRIKAAYPKQWQDVLMANNERPPMWIR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +     +   +   L A  +    +   +       P  +  L GFAEG   VQD +A  
Sbjct: 175 VNQQHHNQADYQALLAADEIVAEIVDSADSALRLAKPTDVYKLAGFAEGHSSVQDGAAQF 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLY 289
             Q         VLD CAAPGGKTA ++        + A+D    RL +++ NL R+ L 
Sbjct: 235 AAQFLDAQPGELVLDACAAPGGKTAHILERQPALKHLVAVDFDATRLSRVQENLTRMQLD 294

Query: 290 AEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           AE I        D+     FD +L+DAPCS+TG IRRHPD+ W R   DI      Q ++
Sbjct: 295 AELIHGDASKPEDWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAPLVQLQAEI 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG ++++ CS+   ++ E +   +  +P  V LVPLN         A + 
Sbjct: 355 LDAMWLQLKPGGTLLYATCSILPAENSEQISSFVARTPDAV-LVPLN---------ADSN 404

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 +I P+        + GMDGFF   L++  
Sbjct: 405 DQAFSWQILPN--------TQGMDGFFYAKLQKKA 431


>gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 452

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 189/467 (40%), Gaps = 39/467 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    + R +   +L  + R  +     +        ++ L ++++  +  +V  TL  +
Sbjct: 1   MAKMTDDRELILGVLLEITRDGVYSHIAIRNVLE--KYQYLDKKERAFITRVVEGTLERM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++      + + K  ++ +LR +V Q+ Y+D V D AV + AV+ A++ K  R 
Sbjct: 59  IEIDYIINQFSNVKVNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAVKLAEK-KGFRS 117

Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170
               VN +LR ++R   ++            ++    IPEW  +   + YG E V  +  
Sbjct: 118 LKGFVNGVLRTIARNMDQIRYPEKEKNPVSWLSIHYSIPEWMVKLWLSEYGAETVEKMLK 177

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEG 221
             +      +         +    +L    +                 + +  L  F +G
Sbjct: 178 GFLEEHPTVIRCNLRKHSEKELTERLRKEGVKVEAHPYLSYAKKISGYDHLGGLESFRDG 237

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEK 278
            + VQD S+ +  ++        V+D+CAAPGGK+  +         V A D+++ ++  
Sbjct: 238 AFQVQDISSMLVAEIAAPQRGDQVIDVCAAPGGKSMHIADLLDGSGMVAARDLTEYKVGL 297

Query: 279 LRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N+ R         + D   FD   +++ D V+ D PCS  G + +  D+ +    + 
Sbjct: 298 IEENICRTGFQNIRAEQKDATVFDKDSERIADIVIADLPCSGLGVLAKKTDLKYKMTKEG 357

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
               A  QR++L    ++VK GG +V+S C+++  ++ E V+  L +SP           
Sbjct: 358 TESLAKLQREILGVVKNYVKEGGALVYSTCTINPAENLENVRWFLDNSPEF----KAEDI 413

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        EG +++ P +           DGFF    RR  +
Sbjct: 414 TPFLCGELQKDVKEGCLQLLPGV--------HDSDGFFIAKFRRKRK 452


>gi|114566754|ref|YP_753908.1| hypothetical protein Swol_1228 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337689|gb|ABI68537.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 456

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/458 (22%), Positives = 197/458 (43%), Gaps = 34/458 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR++++ ++  VM +       L     +S    LS  D+ L+  IVN T+R +  +D 
Sbjct: 11  KARIMAAEIVYEVMERGAFANLALAKALRNS---DLSAADRHLLTEIVNGTVRMIKHLDW 67

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           VL+  L S + ++   L  +LR ++ Q+++L  V DYA+V+ AVE +++    +  A + 
Sbjct: 68  VLELFLHSPIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQKMGAK-MAGVS 126

Query: 125 NSILRRVSR------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N++LR + R         + +   +     P+W  +   +  G +    +     S   +
Sbjct: 127 NAVLRNIIRKLDKIKYPDDPVSFYSIYYSHPDWLVKLWLDTLGTQACETLLAYNNSRSRV 186

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDA 228
            L         E    KL    +      L          P+ I     F +G +++Q+ 
Sbjct: 187 VLRCNPLKCSREELIDKLEEEGVKAQLSPLTPWGIVVEDNPQPIAETASFKKGYFYIQNE 246

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           ++ +   +        VLDLC   GGKT      + +  +V A++   ++LE LR N  R
Sbjct: 247 ASMLAAAILNPPAGERVLDLCCGVGGKTTHLAEYMNNQGEVLAVEFYAQKLELLRQNCQR 306

Query: 286 LHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L L     +E D       +     +L+DAPCS  G + R  D  W ++ ++I +    Q
Sbjct: 307 LGLGIVKDLEKDIRTLNSKEVKARYLLLDAPCSGWGVLNRRADARWRKNQEEINELTQLQ 366

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            + +    + V+  G ++++ C++++ ++EE+++  L  +   V    L+   +  +D  
Sbjct: 367 AQFISHAATMVEKQGYLLYATCTINQAENEEIIEGFLEENQHFVLEGFLSKLSFFPLDKP 426

Query: 405 MALSPE-GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              S   G + + P           G DG F   LRR 
Sbjct: 427 DKASANRGMLTLMPGKY--------GTDGMFYALLRRK 456


>gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155]
 gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155]
          Length = 428

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 1   MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL +   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y ++    I  +   P     +  
Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +      +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 176 LSQSRAEYLAALAELEIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +              + I           
Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425


>gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
 gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
          Length = 429

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 218/457 (47%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L      +A + +  +D  L++ +    LR L
Sbjct: 1   MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKSVGDKDAALLQELCYGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ ++  ++   +  K+ +L  L+ V + Q+++  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWIISKLMSRPMTGKQRALHFLIMVGLYQLMFTRIPPHAALAETVEAAVALKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +    +R   E ++ +       + P+W  ERL+  +  + + +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPVQWQQIVAANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229
           ++ +       +TW   L                   ELP ++  LPGF +G   VQDAS
Sbjct: 175 WLRVNRQHHSRDTWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V L    +   +LDLCAAPGGKT  ++ +  +  V A+DV  +RL ++  NL RL+
Sbjct: 235 AQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLN 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+AE +   D      +C  +LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHAE-VKLGDGRTPAAWCGDRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L     ++K GG ++++ CS+  +++   + + L+     V +   +          
Sbjct: 354 QQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANAVLVETGDLTQP------ 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   I++ P +         G DGF+   L + 
Sbjct: 408 -------GIQVFPQV--------DGGDGFYYAKLVKK 429


>gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           VM223]
 gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           VM223]
          Length = 426

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 205/453 (45%), Gaps = 46/453 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L       A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGQSLSNALPT-----AQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQERLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           +     + + +   L    L +              P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL++++ NL RL L  
Sbjct: 235 ALTYLTPKAGELILDCCAAPGGKTAHILEHTPDSQVVAIDCDETRLKRVQENLQRLKL-N 293

Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             +I  D     D+   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  QR++
Sbjct: 294 AQVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREI 353

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A           
Sbjct: 354 LDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPN-ASLVGSDPAQP--------- 403

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +I P            MDGF+   L +
Sbjct: 404 ----GRQILPGEEA--------MDGFYYAVLSK 424


>gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185]
 gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185]
          Length = 428

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 1   MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL +   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y ++    I  +   P     +  
Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +      +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 176 LSQSRAEYLAALAELEIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILEHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +              + I           
Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLERTADAKLETLSQQNSPQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425


>gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 426

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 211/452 (46%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ ++  V+ +  SL+  L      +A + + +RD  L++ I    LR+LPR++
Sbjct: 1   MNVRATAAKVIYQVVDQGQSLSAALP-----AAQQDIRERDHALLQEICYGVLRWLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ Y+ +  +A V   V   K  K+ +    L+
Sbjct: 56  SITQALMDKPLKGKQRVFHHLILVGLYQLGYMRIPAHAAVAETVNATKTLKKPQ-LRGLI 114

Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYID 179
           N+ILR   R++ E     +   AG    P W  + L+  Y ++   +  ++   +P+++ 
Sbjct: 115 NAILRNYQRQQEELDAKAISHDAGKLGHPSWLLKLLKESYPEQFEAICEANNTKAPMWLR 174

Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +  + +  + +   L+A  + T              P  +  LPGF++G   VQDA+A +
Sbjct: 175 VNRQHNTRDAYRALLDAEGIATELHPQAADALRLLSPCDVTKLPGFSDGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V          +LD CAAPGGKTA ++      KV A+D  + RL+++  NL RL+L A
Sbjct: 235 AVDYLQPQAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +     FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q ++ 
Sbjct: 295 TVLCADARYPEQWWKGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++ + V+  L  + +   LV  + A            
Sbjct: 355 DAMWLQLKPGGTLVYATCSITPQENCDQVKAFLART-LDATLVGSDPAKP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLTK 424


>gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
 gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
          Length = 426

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 202/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGQSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQERLDTQATSHDAGRYGHPGWLLKLLKESYPQQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFA+G   VQDA+A +
Sbjct: 175 VNHQHHTRAEYQALLEQADIACTPHSQAEDALCLETPCDVHQLPGFADGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA       G++V A+D  + RL++++ NL RL L A
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILEHTPGSQVVAIDCDETRLKRVQENLQRLQLNA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDITALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P                ++  +  
Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENCLQVKAFLERTPEA--------------NLVGSDP 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +   +I P            MDGF+   L +
Sbjct: 401 AQPGRQILPGEEA--------MDGFYYAVLSK 424


>gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32]
 gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32]
          Length = 429

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 122/448 (27%), Positives = 200/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 1   MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRISECLEKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y ++    I  +   P     +  
Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +      +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 176 LSQSRTEYLAALAELDIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 236 LAPQANELILDACAAPGGKSCHLLEVEPNIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +    LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 GDAANIGSWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +      +       + I           
Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425


>gi|225574499|ref|ZP_03783109.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038286|gb|EEG48532.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
           10507]
          Length = 446

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 196/460 (42%), Gaps = 38/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +   +L  V  +      ++        F  L ++++  +  +   TL +   ID
Sbjct: 1   MNTRELILGILLAVNEEGEPSHRVIREVLTKHQF--LPKQERAFITRVCEGTLEYQITID 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L+        + K  ++++LR SV Q+ Y+D V D AV + AV+ A++ K   +    
Sbjct: 59  YILNHFSKVKTDKMKPVIREILRSSVYQLKYMDSVPDSAVCNEAVKLAQK-KGFYNLKPF 117

Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           VN +LR ++RE  E+           ++    +P +  ++    YG+E    +    ++ 
Sbjct: 118 VNGVLRTIAREMEEVPYPERSDLENHLSVKYSMPPFLVQKWLREYGEEITEKMLADFLTE 177

Query: 176 LYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
               +  +  +      L ++                        I+++  F EG   VQ
Sbjct: 178 RPTTVRCRQYLTNQEETLESIREQGIQVSPAPYLDYAFYLSGYNHILTIQAFLEGKIQVQ 237

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +  ++        +LDLCAAPGGK+      +     V A D+++ ++  ++ N+
Sbjct: 238 DVSSMLVAEVAAPKKGDQILDLCAAPGGKSLHVADKMAGFGMVEARDLTEYKVGLIQENI 297

Query: 284 DRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            R          MDA   D   +   D VL D PCS  G I + PD+ +        +  
Sbjct: 298 VRAGTINVQTRCMDATVLDIDSEDSADIVLADVPCSGYGVIGKKPDIKYKVTPSKQEEIV 357

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QRK+L +   +VK GG +V+S C++ K++++E V   L + P   E V L+S   +  
Sbjct: 358 ILQRKILDRAARYVKRGGTLVYSTCTIAKEENQENVSWFLENYP--FEAVELDSCLPQ-- 413

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++    +  G++++ P +           DGFF    +R 
Sbjct: 414 ELCCETTKLGYLQLLPGV--------HKTDGFFIAKFKRK 445


>gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175]
          Length = 444

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 207/463 (44%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEKLREIGLAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN   +        E        S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V+   L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLLAFLEKHP-EFTLEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442


>gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
 gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
          Length = 426

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 206/453 (45%), Gaps = 46/453 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGQSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SISQSLMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQERLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           +     + + +   L    L +              P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL++++ NL RL L  
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKL-N 293

Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             +I  D     D+   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  QR++
Sbjct: 294 AQVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREI 353

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A           
Sbjct: 354 LDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPN-ASLVGSDPAQP--------- 403

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +I P            MDGF+   L +
Sbjct: 404 ----GRQILPGEEA--------MDGFYYAVLSK 424


>gi|238921411|ref|YP_002934926.1| 16S rRNA methyltransferase B [Edwardsiella ictaluri 93-146]
 gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative
           [Edwardsiella ictaluri 93-146]
          Length = 430

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 223/457 (48%), Gaps = 45/457 (9%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+   N R +++  LS V+ +  SL+ +L      SA + LS++D+ L++ +   TLR 
Sbjct: 1   MKTTSYNLRAIAARTLSAVLDQGQSLSSVLP-----SAAQSLSEKDRALLQELCFGTLRV 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           LP+++ +L  ++   L  K+ +L  LL V + Q++Y  +  +A +   V+ A   K  + 
Sbjct: 56  LPQLEWILQQLMAKVLTGKQRTLHYLLMVGLYQLVYTRIPPHAALAETVDGATALKRPQ- 114

Query: 120 FAKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISP 175
              L+N +LR+  R++       Q+ A   + P W  +RL++ Y ++   +  ++    P
Sbjct: 115 LKGLINGVLRQFQRQQEALLLQSQQHASHWLHPSWLLKRLQHAYPEQWPAIVEANNQRPP 174

Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           +++ +       + +   L    +               + + +  LPGF  G   VQDA
Sbjct: 175 MWLRVNRRHHTRDAYLTLLQQAGIEAVAHDYFPDAIRLLVAQPVTRLPGFEHGWVTVQDA 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   V L    ++  +LDLC APGGKT  ++     A V A+DV + RL+++R NL RL
Sbjct: 235 SAQHSVDLLDPQDSEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDETRLKRVRENLQRL 294

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             +AE I   D     ++   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 295 QQHAE-IRCGDGRTPDEWASGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDITELAAL 353

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR+++     F+K GG++V++ CS+  Q+++E +   L   P                  
Sbjct: 354 QREIIDAVWPFLKSGGVMVYATCSILPQENQEQILTFLSRHPDA---------------- 397

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              LS  G I+  P +  +        DGFF   L +
Sbjct: 398 --RLSDTGDIQ-RPGL--QFLPRPDAGDGFFYTKLIK 429


>gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
 gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
 gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           FL6-60]
          Length = 430

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 128/456 (28%), Positives = 214/456 (46%), Gaps = 43/456 (9%)

Query: 1   MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+   N R +++  LS V+ +  SL+ +L      SA + LS +D+ L++ +   TLR 
Sbjct: 1   MKNTPYNLRAIAARTLSAVLDQGQSLSSVLP-----SAAQPLSDKDRALLQELCFGTLRV 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-- 117
           LP+++ ++  ++   L  K+  L  LL V + Q++Y  +  +A +   V+ A   K    
Sbjct: 56  LPQLEWIVQQLMAKVLTGKQRPLHYLLLVGLYQLIYTRIPPHAALAETVDGAVALKRPQL 115

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
           +     V    +R  +  +   Q+ A   + P W  +RL+  Y ++       +    P+
Sbjct: 116 KGLINGVLRQFQRQQQPLLLQSQQHASHWLHPSWLLKRLQQAYPEQWQSIADANNQRPPM 175

Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + +   L    +              + P+ +  LPGF +G   VQDAS
Sbjct: 176 WLRVNRCHHTRDAYLALLLQAGIDAVPHETFPDALRLQDPQPVSRLPGFEQGWVTVQDAS 235

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    +   +LDLC APGGKT  ++     A V A+DV + RL+++R NL RL 
Sbjct: 236 AQHSVDLLDPQDGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDESRLKRVRENLQRLQ 295

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +AE I   D     ++   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 296 QHAE-IRCGDGRTPDEWARGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+++     F+K GG++V++ CS+  Q+++E +   L   P                   
Sbjct: 355 REIIDAVWPFLKSGGVMVYATCSILPQENQEQILAFLSRHPDA----------------- 397

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             LS  G I+  P +  +        DGFF   L +
Sbjct: 398 -RLSDTGDIQ-RPGL--QFLPRPDAGDGFFYAKLIK 429


>gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
           FSL N1-067]
          Length = 446

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 206/467 (44%), Gaps = 44/467 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++  L+  +   +     L++        + L+  D+ L+  +V  T +  
Sbjct: 1   MKKQKTVREIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +   L   L          ++ LLR+SV Q+ +LD V ++A+++ A + AK D  ++ 
Sbjct: 58  ITLXYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR V R+         + +++IA  + +P W  +R    YG E++  I  A 
Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIQDPVEKIAVETSLPVWLAKRWAKQYGNEQLREIGMAF 173

Query: 173 ISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +   +  + V       E    +LN               L     S+     + +G   
Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTRNEFIDEALIVEKGSVAETKAYKDGKCS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              RL L       +DA         + FD +LVDAPCS  G +RR PD+ + +   DI 
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFAPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P    L P+     
Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
              +    +  + ++++ P  +        G DGFF  +LR++  P+
Sbjct: 408 ALPEKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445


>gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|224493291|sp|A1JRZ3|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 429

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----QKSISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSHYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +                P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVNRLHHSRIEYLELLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L    +   +LDLCAAPGGKT  ++       V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKVHVLAVDIDEQRLSRVKENLQRLR 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A D+   D     ++C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHA-DVRVGDGRTPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+                      
Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEA----------------- 396

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             L   G +        +        DGF+   L +
Sbjct: 397 -DLVETGTVSAL---GRQNLPHPEDGDGFYYAKLIK 428


>gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10]
 gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10]
          Length = 457

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 202/457 (44%), Gaps = 35/457 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  +L  + + +     LL+        + +   D  L+  IV  TL+   R+D 
Sbjct: 9   NVRDAALDVLIKISKDQAYSHLLLNETVMKKKIKEV---DVALLTEIVYGTLQHQRRLDY 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            +       L + +  +  LLR+SV Q+ +LD V D+A+++ AV  A + + ++  A +V
Sbjct: 66  YVSAFSKKELNKLENWVLILLRLSVYQMHFLDRVPDHAILNEAVRIASK-RGHKGIAGMV 124

Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR V RE         +  +R+A  +  P+W  +R  + YG E    I+   +S   
Sbjct: 125 NGILRSVQREGVPDLEEIEDPKERLAIETSHPDWLIQRWISHYGFETAHRIAHGNLSYPV 184

Query: 178 IDLTVKFD---IETWAHKLNAVM-----LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
               V       E   H+           P     ++     I     F EG   +QD  
Sbjct: 185 SSARVNRMKVTREELMHEWTEEGLQITASPYLEEAVRVDKGVISRTAAFREGRCSIQDEG 244

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   L      + VLD CAAPGGKT+     +    ++ A+D+ K +++ +    +RL
Sbjct: 245 SMMVTGLLDPKPGMRVLDSCAAPGGKTSHIAERMNDEGELYAMDIHKHKIKLIDAQAERL 304

Query: 287 HLYAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L     ++ DA    +   ++ FD +LVDAPCS  G I+R PD+ WT+   DI +    
Sbjct: 305 GLSVVHGLKGDARLAGEQLEEESFDCILVDAPCSGLGVIQRKPDLKWTKSERDIERLTVI 364

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L Q    +KPGG +V+S C++D +++E  V   +  +          +   + +  
Sbjct: 365 QGEILKQVWPLLKPGGRLVYSTCTIDYEENEGQVTHFVNETADADFEADFLNRLPEPVQT 424

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   +  G I++ P           G DGFF  ++ +
Sbjct: 425 SSFANQSG-IQLIPGQY--------GTDGFFMTSIVK 452


>gi|160939810|ref|ZP_02087157.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437244|gb|EDP15009.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
           BAA-613]
          Length = 455

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 198/460 (43%), Gaps = 35/460 (7%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M      G+  R +   +L+ V+ +   +  +L+       ++ L + D+  +   V  T
Sbjct: 1   MAKTLDRGLENREIVLDILTEVLEQGAFVHLVLNQALQ--KYQYLGKADRSFITRAVEGT 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
           L +L +ID V++    + + + K  ++ LLR+SV QILY+D V D AV + AV+ A + +
Sbjct: 59  LEYLIQIDEVINRYSKTKINKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVK-R 117

Query: 116 ENRHFAKLVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
                   VN +LR +SREK        +    IPEW     E  +GKE+   I+ + + 
Sbjct: 118 HFSGLKGFVNGVLRTISREKENLTFDTPSLRYSIPEWMYAMWEKEFGKEKAEKIAASFLE 177

Query: 175 PLYIDLTVKFDIETWAHKLNA---------VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
                +            L +          +     +   +  + +  L  F +G   V
Sbjct: 178 DKPTWVRCNLHRADRESILASLKAQGTSVRELPFMESMIAIDGYDYLEGLDAFRKGWIQV 237

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282
           QD +++   ++     +  ++D+CAAPGGK+  L         V A D++ ++   +  N
Sbjct: 238 QDVTSAFVGEIASPEKDSYIIDVCAAPGGKSLHLADKLEGTGMVEARDLTYQKTALIEEN 297

Query: 283 LDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           + R  +     +  D    D       D V+ D PCS  G I R PD+ +    + + + 
Sbjct: 298 MARCGVTNMKTLVWDALETDLSAMAKADIVIADLPCSGLGIIGRKPDIKYNMTPEKLEEL 357

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  QR++L     +VKPGG++ +S C++D+ ++++    +    P    LVP++      
Sbjct: 358 AGLQREILSVVWQYVKPGGLLCYSTCTIDRLENQDNAAWLRDRFP----LVPVDLTDRFG 413

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +GWI+  P +           DGFF    RR
Sbjct: 414 GLPQEPSLKDGWIQFLPGV--------HPYDGFFISVFRR 445


>gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           JA-3-3Ab]
 gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           JA-3-3Ab]
          Length = 448

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 121/477 (25%), Positives = 186/477 (38%), Gaps = 72/477 (15%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR ++   L  + R       +L+     S    L   D  LV  +V    R    +D
Sbjct: 1   MNARQLALLALQKIERHNAYADVVLEHLLAHSR---LIPADCHLVSELVYGITRRRRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
           A++D        ++   L+ +L +   Q+ +LD +   A +  +VE A++         +
Sbjct: 58  ALIDCFARRPAHQQPLDLRLILYLGFYQLAFLDHIPPRAAIHTSVELARQVGLG-SLTGV 116

Query: 124 VNSILRRVSRE-----------------KIELLQRIAGISIIPEWFKERLENFYGKERVL 166
           VN ILR   R+                   + +Q +      P+W         G     
Sbjct: 117 VNGILRAYQRQALDGAEKDPLKPLQDTLPTDPIQALGIRHSFPDWLVRLWWERLGPAETE 176

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLP 216
            +      P ++DL V          + A          +    G +RL +    I +LP
Sbjct: 177 QLCAWFNQPPHLDLRVNPLRADVDKVIQALAEAGIPASPIPEVPGALRLGQHAGDITALP 236

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
           GFA+G W VQDASA   V          V+D CAAPGGKT  +   +    ++ ALD   
Sbjct: 237 GFAQGWWSVQDASAQQVVHYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGEIWALDRHP 296

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMD----------AFDYCPKKLFDAVLVDAPCSSTGTIR 323
            RL +L  N+ RL L +   + +D               P +  D VL+DAPCS  GT+ 
Sbjct: 297 HRLRRLEENVQRLGLSSIRPLAIDLLSLDAAAEPPAPLPPWQSADRVLLDAPCSGLGTLH 356

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           RH D  W +    I + A  Q +LL     ++KPGG++V++ C+L   ++E V+Q  L  
Sbjct: 357 RHADARWRQTPAQIQELAHLQAQLLQVAARWLKPGGLLVYATCTLHPAENEAVIQSFLNR 416

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            P                           + I P   ++        DGFF   LRR
Sbjct: 417 HPHWAAEGDP-------------------LLIWPHRQDR--------DGFFIQRLRR 446


>gi|254476801|ref|ZP_05090187.1| Fmu [Ruegeria sp. R11]
 gi|214031044|gb|EEB71879.1| Fmu [Ruegeria sp. R11]
          Length = 420

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 150/440 (34%), Positives = 219/440 (49%), Gaps = 22/440 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +G +AR  + +LL  V+ +      LL   Y   A   L+  D+   + +   TLR L
Sbjct: 1   MSNGTHARRRAIYLLDQVLGEGR----LLSECYAAGALDKLAPEDRARAQRLAADTLRNL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D VL   L  S P     +   LR+   ++     A + VV+  V      K +   
Sbjct: 57  ERADRVLQKHLKKSTPLM---VHNALRIGTVELCQGG-AAHGVVNEMVNIVAAHKRHGKL 112

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN++LR+V+ +      ++  +  +P+W +  L   +G   +L I  A  +   +DL
Sbjct: 113 KGLVNAVLRKVADQGPTEWAKL-RVPRLPKWLRSPLSQAWGAPAMLEIEAAHAAGAPLDL 171

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T K  ++     L+AV LPTG  RL    + + +LPGFAEG WWVQDA+A++P QL    
Sbjct: 172 TAKPGVD--LSALDAVKLPTGSYRLHGSVQ-VSNLPGFAEGNWWVQDAAAALPAQLLAAK 228

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLCAAPGGKT Q+  SGA VTA+D S+ R+ +LR NL+R  L A  ++      
Sbjct: 229 PGEKVLDLCAAPGGKTMQMAASGADVTAVDQSEGRMARLRENLERTGLSATVVV---GDA 285

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 +DAVL+DAPCS+TGTIRRHPD+   +D     +    Q ++L    S VKPGG 
Sbjct: 286 LEETGQYDAVLLDAPCSATGTIRRHPDLPHAKDGSGFGELIELQAQMLAHAWSLVKPGGR 345

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+  CSL   + E  ++  L   P       L +           ++ EG +R+ PD  
Sbjct: 346 LVYCTCSLLPDEGECQIEDALDMFPDMQVGEGLRNLAGID---PAWITDEGGLRLRPDYW 402

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   GMDGF+   LR+
Sbjct: 403 ----PDLGGMDGFYLAELRK 418


>gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573]
 gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573]
          Length = 438

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 206/453 (45%), Gaps = 46/453 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 13  MNVRAAAASALYQVVDLGQSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 67

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 68  SISQSLMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 126

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 127 NAVLRNYQRDQERLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 186

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           +     + + +   L    L +              P  +  LPGFAEG   VQDA+A +
Sbjct: 187 VNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQDAAAQL 246

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL++++ NL RL L  
Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKL-N 305

Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             +I  D     D+   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  QR++
Sbjct: 306 AQVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREI 365

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A           
Sbjct: 366 LDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPN-ASLVGSDPAQP--------- 415

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +I P            MDGF+   L +
Sbjct: 416 ----GRQILPGEEA--------MDGFYYAVLSK 436


>gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223]
 gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223]
          Length = 428

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 1   MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL +   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y ++    I  +   P     +  
Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +      +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 176 LSQSRTEYLAALAELEIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +              + I           
Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLERTADAKLDKLSQQNSPQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425


>gi|170758272|ref|YP_001787822.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169405261|gb|ACA53672.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 442

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 115/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+  +L  V+ +      +L  +   S    L   D+ L+  IV  TL++   +D 
Sbjct: 3   NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119
           ++   L + +     ++  +LR+++ QI YLD +  +A V+ AVE +K+           
Sbjct: 60  IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119

Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                + +   +   +    L++ + +   P+W  +   + YG E    I         I
Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D +    KL           +          ++I   P F EG   VQD S
Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +            VLDLC+APGGKT  +   + + +KV A D+ + +L  +  N  RL
Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDIHQNKLSLIEANAKRL 299

Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   +    DA  +  K  +    V++D PCS  G IR+ P++ WT++  +I      Q
Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAYRVVMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           RK++  G S++K GGI+++S C+L+K+++EE +   L+      ++ PL      +I   
Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EG++ I P+           MDGFF   L++
Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441


>gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4]
 gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4]
          Length = 429

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 122/448 (27%), Positives = 199/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 2   MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 58  KRVAECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 116

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y       I  +   P     +  
Sbjct: 117 NGVLRNIQRQLTPLSTESETLSYNTPGWLIKRLKAAYPDNWQEIILQSHERPPMWLRNNR 176

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +    + +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 177 LSQSRDEYLAALSELEIEASAGLSDDAILLAHPKDVTTLPRFHEGAASVQDGAAQWAATL 236

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    ++ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 237 LAPQANELILDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIH 296

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  QR++L    
Sbjct: 297 GDAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCW 356

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +           A  + I           
Sbjct: 357 KWLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLAQQASSQDIGW--------- 407

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 408 -QITPG--------QHNMDGFYYARLLK 426


>gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
           Ejp617]
          Length = 441

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 117/457 (25%), Positives = 217/457 (47%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L      +A + +  +D  L++ +    LR L
Sbjct: 13  MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKSVGDKDAALLQELCYGVLRTL 67

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ ++  ++   +  K+ +L  L+ V + Q+++  +  +A +   VE A   K  +  
Sbjct: 68  PQLEWIISKLMSRPMTGKQRALHFLIMVGLYQLMFTRIPPHAALAETVEAAVALKRPQ-L 126

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +    +R   E ++ +       + P+W  ERL+  +  + + +  ++    P+
Sbjct: 127 KGLINGVLRQFQRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPVQWQQIVAANNQRPPM 186

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L                   ELP ++  LPGF +G   VQDAS
Sbjct: 187 WLRVNRQHHSRDAWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQDAS 246

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V L    +   +LDLCAAPGGKT  ++ +  +  V A+DV  +RL ++  NL RL+
Sbjct: 247 AQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLN 306

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+AE +   D      +C  +LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 307 LHAE-VKLGDGRTPAAWCGDRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 365

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L     ++K GG ++++ CS+  +++   + + L+     V +   +          
Sbjct: 366 QQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANAVLVETGDLTQP------ 419

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   I++ P +         G DGF+   L + 
Sbjct: 420 -------GIQVFPQV--------DGGDGFYYAKLVKK 441


>gi|154251779|ref|YP_001412603.1| sun protein [Parvibaculum lavamentivorans DS-1]
 gi|154155729|gb|ABS62946.1| sun protein [Parvibaculum lavamentivorans DS-1]
          Length = 440

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 164/441 (37%), Positives = 243/441 (55%), Gaps = 12/441 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +G+ AR  ++ +L+ V+++R +       E      R    RD+   RAI    LR L  
Sbjct: 7   TGLAARQGAASILTAVLKERRAFDDAFIAEAASGHLRNAEPRDRAFARAITATALRRLGT 66

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ID +L  ++   LP++  + + +LR  +A+IL+L VA +A V + VE A RD+  RHF  
Sbjct: 67  IDHILSLLIDKELPKRAGATENILRAGLAEILFLRVAAHAAVGMNVEAASRDENARHFKA 126

Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LRR +RE   +L  +       P+W  +     YG+E   AI     +   +D++
Sbjct: 127 LVNAVLRRATREGDAILDNLDTERLDTPDWLWQSWSAAYGEETARAIVRMHYADPPLDIS 186

Query: 182 VKF--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           VK   +  T A  L A +LP+G +RL++    I  LPGF +G WWVQDA+A++P +L G 
Sbjct: 187 VKRAEERMTIAEALGATVLPSGTLRLEDA-GRIEDLPGFDDGAWWVQDAAAALPAKLLGD 245

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           +    VLDLCAAPGGKTA+L  +GA VTALD S+ RL++L  NL RL L A+ +   DA 
Sbjct: 246 VTGREVLDLCAAPGGKTAELAAAGAHVTALDRSRPRLDRLEQNLSRLGLEAKTV-VADAT 304

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            Y P + +D +L+DAPCSSTGT RRHPDV   +   D  K A  Q +LL    + + PGG
Sbjct: 305 AYAPGRTWDLILLDAPCSSTGTARRHPDVPHLKSPADRDKLAALQARLLAHAATLLAPGG 364

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL+ ++    V+  L + P      P+         +   ++ EG +R  P  
Sbjct: 365 TLVYCTCSLEPEEGVRQVEAFLAAHP-AFRRQPVGVEDV--AGLGEIVTGEGDLRTLPCH 421

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           L  +     G+DGF+A  L R
Sbjct: 422 LAAL----GGLDGFYAARLTR 438


>gi|110598393|ref|ZP_01386666.1| sun protein:transcription antitermination factor NusB [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340002|gb|EAT58504.1| sun protein:transcription antitermination factor NusB [Chlorobium
           ferrooxidans DSM 13031]
          Length = 447

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 203/457 (44%), Gaps = 35/457 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  + ++L  +   +     +L      SA   +   D+ L   +VN  LR+  ++D +
Sbjct: 4   ARETALNVLQALETGKKRSDQILHRTLEQSALNRI---DRALATGLVNGVLRYRLQLDFI 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +       L +    L+ +LR+ + QIL+LD V D+A V+  V+ AK+ K +R  +KLVN
Sbjct: 61  ISRYYHHKLEKAAPVLKNILRLGLYQILFLDKVPDWAAVNECVKLAKKYKGDR-MSKLVN 119

Query: 126 SILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            +LR+++ + I L + +         A     P+W  ER    YG ++  A+        
Sbjct: 120 GVLRKITPQSIALDEWLKEREPSEQLAIKHSHPKWLVERWIADYGLKKTEALLTYNNRFP 179

Query: 177 YIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
                +   ++T   +L        A     G   L    E     P  ++G   VQ+ +
Sbjct: 180 LFGFRIN-RLKTSEEQLFSDPLFSSAAYEACGIENLFISKEFSTFEPAVSDGRLTVQNPT 238

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
            ++   L   +   +VLDLCAAPGGK+  +   + +   VT+LD+ +++L K+  + + L
Sbjct: 239 QALACLLLNPVPGSAVLDLCAAPGGKSTFMAELMGNNGSVTSLDLYEQKLLKITTHAEAL 298

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +     +  DA  + P+   DA+L+DAPCS +G + R  ++ W    + I +    Q +
Sbjct: 299 GITIIRTVAADARSFKPENRPDAILLDAPCSGSGVVGRRTELRWKLTPETIQELITLQME 358

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++  G++V++ CS++ +++   ++  L   P    + P      +       
Sbjct: 359 LLDHAAELLEENGVLVYATCSIEPEENALQIEAFLERHP-DFSVDPDRGKVPEPFLPKSG 417

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              +G I   P           G DG FA  LR+  +
Sbjct: 418 F--KGAILTLPGEYP-------GFDGGFAQRLRKTGK 445


>gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           ATCC 29906]
 gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           ATCC 29906]
          Length = 422

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 210/457 (45%), Gaps = 51/457 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  ++ V+ + +SL+ ++         + +S +D+ L++ +   TLR L
Sbjct: 1   MKTSYNLRSIAAKAIAQVLDQGLSLSSVIPEL-----QKNISDKDKALLQELCFGTLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ ++  ++   L  K+  L  L+ V + Q+LY  V  +A +   V  A   K+ +  
Sbjct: 56  PQLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLYTRVPAHAALAETVNGAIALKKPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPL 176
             L+N +    +R     +E  Q      + P W   R++N Y +    +   +    P+
Sbjct: 115 KGLINGVLRQFQRQQDVLMERFQNNDSRYLHPSWLLTRIKNAYPELWESIIEGNNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    E +   L    +                P ++  LPGF+EG   VQD S
Sbjct: 175 WLRVNQIHHSREQYLALLEKEGISAFSDDHHPNAIRLETPCNVHLLPGFSEGWITVQDRS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A    +L    NN  +LDLCAAPGGKT     I   A V A+D+ ++RL +++ NL+RL 
Sbjct: 235 AQRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLK 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A  +   D      +C    FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q
Sbjct: 295 LHAT-VKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L     ++K GG +V++ CS+  +++ + +   L S                     
Sbjct: 354 KEILHAIWPYLKSGGTLVYATCSILPEENSQQIAAFLSSMQDA----------------- 396

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +   +  P+            DGFF   + + 
Sbjct: 397 ---QCDYQHQCLPEKYSG--------DGFFYALINKK 422


>gi|85060226|ref|YP_455928.1| 16S rRNA methyltransferase B [Sodalis glossinidius str.
           'morsitans']
 gi|123738922|sp|Q2NQQ2|RSMB_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|84780746|dbj|BAE75523.1| putative rRNA methylase [Sodalis glossinidius str. 'morsitans']
          Length = 433

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 211/458 (46%), Gaps = 42/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R++++  ++ V+ +  SL  LL           LS++D+ L++ +    +R L
Sbjct: 1   MKTHYNLRVIAARAVAQVLDQGQSLGALLP-----PLQAPLSEKDRALLQELCFGIMRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ +L  ++   L  K+  +  LL V + Q+ Y  +  +A +   VE A   K  + F
Sbjct: 56  PQLEWLLRQLMAKPLTGKQRPVHYLLMVGLYQLTYTRIPPHAALAETVEGAVAMKRPQ-F 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++       +R     + P W ++R+   +  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQPALLADAERQDIRHLHPSWLQKRILAAWPAQYAQIIDANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    + +   L    +               +P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVNRLHHSRDAYLALLAGTDIAAVAHSQLPDAIRLEMPCNVGRLPGFDRGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLH 287
           A     L    N+ ++LDLCAAPGGKT  ++      +V A+DV  +R  ++  NL RL 
Sbjct: 235 AQGCALLLAPQNSETILDLCAAPGGKTTHILEIAPAARVMAVDVDGQRAARIHDNLQRLG 294

Query: 288 LYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           + AE +I        +    LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  QR
Sbjct: 295 MQAEVVIGDGRTPDAWRSGMLFDRILLDAPCSATGVIRRHPDIKWLRRDGDIAELAELQR 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      +K GG ++++ CS+  +++   +   L   P  +     ++A         
Sbjct: 355 QILCAAWRVLKLGGTLLYATCSILPEENRGQIAAFLADHPDALLQETGDAAAP------- 407

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  ++  P        V +  DGFF   + +  Q
Sbjct: 408 ------GLQCLP--------VPTSGDGFFYAKMIKETQ 431


>gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3]
 gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3]
          Length = 436

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 114/458 (24%), Positives = 180/458 (39%), Gaps = 49/458 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  +L  + +       LLD E   +A   LS+RD  L  A+V   +     +D 
Sbjct: 3   QAREVALSVLLRMEQDDSYSNLLLDAELEKAA---LSRRDAALATALVYGVVARRITLDY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L+      + + +  L+ +LR+   Q+ YLD +   A V+ AV+ AK+     H +  V
Sbjct: 60  LLETASGRPVQKMQPVLRAILRLGAYQLCYLDKIPARAAVNEAVQLAKKRHLG-HASGFV 118

Query: 125 NSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N +LR + R++  L                   P          YG ER   I +   + 
Sbjct: 119 NGVLRGLDRKRGALPFPSEEADVLRAWEVRYSCPRALIALWRQAYGPERTREILEQLNAV 178

Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQ 226
             + + V       +    +L    +            L      + +LP F EG ++VQ
Sbjct: 179 PPLAVRVNTLRTTPDALRAELAEAGIEAAPDASVPDALLLSHSADLRTLPAFTEGCFFVQ 238

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +           +V DLCAAPGGK+      +     V A D+   R+  +    
Sbjct: 239 DIASQMACAALDPQPGETVYDLCAAPGGKSFTLALHMRGQGMVRAFDLHAHRVRLIEEGA 298

Query: 284 DRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             L L         DA    P    D VL D PCS  G IRR P++ + ++         
Sbjct: 299 GWLGLSGIVQASVRDATGGEPLPPADRVLCDVPCSGLGVIRRKPEIRY-KNPKIFDGLPD 357

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L  G + +KPGG++V+S C+L+  ++E VV++ L       E VP  SA      
Sbjct: 358 LQYHILCDGAANLKPGGVLVYSTCALNPAENEAVVRRFLDGH-AGFEPVPFPSA------ 410

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         P     +   + G DGFF   L R
Sbjct: 411 --------------PAGNATLFPQADGTDGFFIAKLLR 434


>gi|295109189|emb|CBL23142.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           obeum A2-162]
          Length = 450

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 96/465 (20%), Positives = 196/465 (42%), Gaps = 39/465 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M SG+N R +   +L  +  +       +      S ++ L ++++  +  +   TL + 
Sbjct: 1   MTSGINTREMILEILLQINEEGEHSHIAIRNAL--SKYQFLPKQERAFITRVCEGTLEYR 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++      + + K  ++++LR ++ Q+ ++D V D AV + AV+ A++ K   +
Sbjct: 59  ILIDYIINSFSKIPVDKMKAPIREILRSAIYQMKFMDRVPDSAVCNEAVKLAQK-KGFYN 117

Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170
               VN +LR  +R+  EL            ++    +PE    R    YG+E    +  
Sbjct: 118 LKPFVNGVLRTAARQMNELEYPSREENLVRYLSVRYSMPEELVNRWLEDYGEEITEKMLA 177

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEG 221
             +    + +  +  + +     +++                +       I++L  F +G
Sbjct: 178 DFLREKPVMIRCRTYLNSVDKICDSLKSQGVTVEPAPYLPYAKRISGYNHILALDAFIQG 237

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT---ALDVSKRRLEK 278
              VQD S+ +  ++        V+D+CAAPGGK+  +           A D+S+ ++  
Sbjct: 238 KILVQDVSSMLVAEIANPSRGDYVIDMCAAPGGKSLHMGDKMEGFGTVDARDISQYKVNL 297

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N+ R           DA  +    +   D VL D PCS  G I + P++ +      
Sbjct: 298 IEENIQRTGSINVQAKVQDATLFDVESECKADIVLADVPCSGYGVIGKKPEIKYRSTAQK 357

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
             +    QR +L +   +VKP G+++FS C++ K+++EE +   + + P  +E +     
Sbjct: 358 EDELVILQRTILDKAAEYVKPRGVLIFSTCTIAKEENEENMMWFMNNHPFKLESIDDCIP 417

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++    +  G++++ P +         G DGFF    RR 
Sbjct: 418 E----ELRSETTALGYLQLLPGV--------HGTDGFFIAKFRRK 450


>gi|333014516|gb|EGK33864.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           K-227]
          Length = 454

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 211/456 (46%), Gaps = 46/456 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
              N R +++H +  V+ +  SL+ +L         + +S +D+ L++ +    LR L +
Sbjct: 28  KQRNLRSMAAHAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQ 82

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +    
Sbjct: 83  LDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKG 141

Query: 123 LVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           L+N +LR+  R + E            + P W  +RL+  Y  E+  +I++A      + 
Sbjct: 142 LINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPPMW 200

Query: 180 LTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230
           L +       ++W   L+   +                P  + +LPGF +G   VQDASA
Sbjct: 201 LRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA 260

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
              +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL +
Sbjct: 261 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM 320

Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q 
Sbjct: 321 KAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS 379

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      +K GG +V++ CS+  +++   ++  L+ +                 ++  
Sbjct: 380 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCE 425

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +PE          ++    +   DGFF   L + 
Sbjct: 426 TGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 454


>gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 430

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 126/454 (27%), Positives = 200/454 (44%), Gaps = 43/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R  ++ ++  V+ +  SL+ +L      +A   ++ RD+ L++ +   TLR+LPR+D
Sbjct: 1   MKTRAQAALVIQQVLDQGQSLSAVLP-----AAQEKVAPRDRALLQELCYGTLRWLPRLD 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A +  ++   L  K      L+ V + Q++Y  +  +A V   V   K  K       L+
Sbjct: 56  AAVGEMMDKPLKNKSRIFHYLILVGLYQLIYTRIPAHAAVAETVNAVKLLKGT-SLRGLI 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N +LR   R    +L RI  +       PEW  +RL   Y  +    I +A      + +
Sbjct: 115 NGVLRNFQRSAEVILLRIDRVPSIRLGHPEWLTKRLRQAYP-DEWEFIMEANNQRPPMWI 173

Query: 181 TVKFDIETWAHKL---------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
                 ++    L                    L E P  +  LPGF  G   VQD +A 
Sbjct: 174 RNNSQRQSREQMLVRMAEAGINAMAGEEGEDCILLERPCDVTKLPGFEAGDCSVQDGAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288
               L        VLD CAAPGGKTA L+        V A+D    RL++++ NLDR+ L
Sbjct: 234 QAAALLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADDNRLKRVQENLDRIGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A            + P+  FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q +
Sbjct: 294 TAKVIHGDASTPDLWWPEGQFDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQHR 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    S +K GG ++++ CS+  +++ + ++  L ++P    LVPL++           
Sbjct: 354 ILGALWSKLKSGGTLLYATCSVLPEENRDQIRAFLAATPDAT-LVPLHAQDTPECP---- 408

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +  P   E        MDGF+   L +
Sbjct: 409 -----GRQFLPGEAE--------MDGFYYAKLIK 429


>gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603]
 gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603]
          Length = 438

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 207/453 (45%), Gaps = 46/453 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ +L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 13  MNVRAAAASVLYQVVDLGQSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 67

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 68  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 126

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 127 NAVLRNYQRDQERLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 186

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           +     + + +   L    L +              P  +  LPGFAEG   VQDA+A +
Sbjct: 187 VNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQDAAAQL 246

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL++++ NL RL L  
Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKL-N 305

Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             +I  D     D+   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  QR++
Sbjct: 306 AQVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREI 365

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A           
Sbjct: 366 LDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPN-ASLVGSDPAQP--------- 415

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +I P            MDGF+   L +
Sbjct: 416 ----GRQILPGEEA--------MDGFYYAVLSK 436


>gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 452

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 194/467 (41%), Gaps = 39/467 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    + R +   +L  + R  +     +        ++ L ++++  +  +V  TL  +
Sbjct: 1   MAKMTDDRELILGVLLEITRDGVYSHIAIRNVLE--KYQYLDKKERAFITRVVEGTLERM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++      + + K  ++ +LR +V Q+ Y+D V D AV + AV+ A++ K  R 
Sbjct: 59  IEIDYIINQFSNVKVNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAVKLAEK-KGFRS 117

Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170
               VN +LR ++R   ++            ++    IPEW  +   + YG E V  +  
Sbjct: 118 LKGFVNGVLRTIARNMDQIRYPEKEKNPVSWLSIHYSIPEWMVKLWLSEYGAETVEKMLK 177

Query: 171 ACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEG 221
             +      +         +    +L    +                 + +  L  F +G
Sbjct: 178 GFLEEHPTVIRCNLRKQSEKELTERLRKEGVKVEAHPYLSYAKKISGYDHLGGLESFRDG 237

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEK 278
            + VQD S+ +  ++        V+D+CAAPGGK+  +         V A D+++ ++  
Sbjct: 238 AFQVQDISSMLVAEIAAPQRGDQVIDVCAAPGGKSMHIADLLDGSGMVAARDLTEYKVGL 297

Query: 279 LRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N+ R         + D   FD   +++ D V+ D PCS  G + +  D+ +    + 
Sbjct: 298 IEENICRTGFQNIRAEQKDATVFDKDSERIADIVIADLPCSGLGVLAKKTDLKYKMTKEG 357

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
               A  QR++L    ++VK GG +V+S C+++  ++ E V+  L +SP   E   + S 
Sbjct: 358 TESLAKLQREILEVVRNYVKEGGALVYSTCTINPAENLENVRWFLDNSP-EFEAEDITSF 416

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
               +   +    EG +++ P +           DGFF    RR  +
Sbjct: 417 LCGELQKDV---KEGCLQLLPGV--------HDSDGFFIAKFRRKRK 452


>gi|302386503|ref|YP_003822325.1| sun protein [Clostridium saccharolyticum WM1]
 gi|302197131|gb|ADL04702.1| sun protein [Clostridium saccharolyticum WM1]
          Length = 446

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 102/456 (22%), Positives = 195/456 (42%), Gaps = 31/456 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    ++R +   +L  ++ +      +L      + ++ L + ++  +   V  T+ +L
Sbjct: 2   MTKETDSREIVLEILLEILERGGYSHIILRQAL--NKYQYLEKSERAFITRTVEGTVEYL 59

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D ++D      + + K  ++ +LR+SV Q+LY+D V D AV + AV+ A + K    
Sbjct: 60  LQMDYIIDSFSNIKVRKMKPVIRTILRMSVYQLLYMDRVPDSAVCNEAVKLAVKRKFT-G 118

Query: 120 FAKLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
               VN +LR +SR K ++     +    +P W     E  YG+E  + + ++ +     
Sbjct: 119 LKGFVNGVLRNISRNKEDITWPDDSIRYSMPSWIVSMWEKTYGRETAVIMMESFLKNKKT 178

Query: 179 DLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            +   F   +    L          +    +  +   E  + +  L  F +G   VQD S
Sbjct: 179 TVRCNFAKASKEEILQSLKNQGAEVSESGISEAVLCIEKYDYLEGLDAFQKGYIQVQDLS 238

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRL 286
           +S   ++        V+D+C APGGK+  +         V   D++  ++  ++ N++R 
Sbjct: 239 SSFVGEIADPQKGDYVIDVCGAPGGKSIHIADKLDSTGMVEVRDLNLYKINLVQENINRC 298

Query: 287 HLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                     DA    P      D V+ D PCS  G I R PD+ +    +D+   A  Q
Sbjct: 299 GFSNIRTRVQDALVSDPDSVGKADIVIADLPCSGLGIIGRKPDIKYRMTPEDLESLAALQ 358

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R++L    ++VKPGG ++FS C+++K+++ E     L   P       ++        + 
Sbjct: 359 REILSVVQAYVKPGGRLIFSTCTINKKENNENAMWFLNHFPFDC----MDLKGKLGEKLE 414

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A   + +I+  P +           DGFF  A ++
Sbjct: 415 SAGLNQKFIQFLPGI--------HPCDGFFIAAFQK 442


>gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3]
 gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3]
          Length = 429

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 199/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 2   MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 58  KRVAECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 116

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y       I  +   P     +  
Sbjct: 117 NGVLRNIQRQLTPLSTESETLSYNTPGWLIKRLKAAYPDNWQEIIQQSHERPPMWLRNNR 176

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +    + +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 177 LSQSRDAYLAALSELEIEASAGLSDDAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 236

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  VLD CAAPGGK+     +    ++ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 237 LAPQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIH 296

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  QR++L    
Sbjct: 297 GDAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCW 356

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +           A  + I           
Sbjct: 357 KWLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLAQQASSQDIGW--------- 407

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 408 -QITPG--------QHNMDGFYYARLLK 426


>gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320]
 gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           HI4320]
          Length = 422

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 209/457 (45%), Gaps = 51/457 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  ++ V+ + +SL+ ++         + +S +D+ L++ +   TLR L
Sbjct: 1   MKTSYNLRSIAAKAIAQVLDQGLSLSSVIPEL-----QKNISDKDKALLQELCFGTLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ ++  ++   L  K+  L  L+ V + Q+LY  V  +A +   V  A   K+ +  
Sbjct: 56  PQLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLYTRVPAHAALAETVNGAIALKKPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPL 176
             L+N +    +R     +E  Q      + P W   R++N Y +    +   +    P+
Sbjct: 115 KGLINGVLRQFQRQQDVLMERFQNNDSRYLHPSWLLTRIKNAYPELWESIIEGNNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229
           ++ +  +    E +   L    +                P ++  LPGF EG   VQD S
Sbjct: 175 WLRVNQIHHSREQYLALLEKEGISAFSDDHHPNAIRLETPCNVHLLPGFNEGWVTVQDRS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A    +L    NN  +LDLCAAPGGKT     I   A V A+D+ ++RL +++ NL+RL 
Sbjct: 235 AQRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLK 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A  +   D      +C    FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q
Sbjct: 295 LHAT-VKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L     ++K GG +V++ CS+  +++ + +   L S                     
Sbjct: 354 KEILHAIWPYLKSGGTLVYATCSILPEENSQQIAAFLSSMQDA----------------- 396

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +   +  P+            DGFF   + + 
Sbjct: 397 ---QCDYQHQCLPEQYSG--------DGFFYALINKK 422


>gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200]
          Length = 429

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 1   MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRISECLEKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y ++    I  +   P     +  
Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +      +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 176 LSQSRTEYLAALAELDIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYA--ED 292
                N  +LD CAAPGGK+  L+     +   A+D   +RLE+++ NLDRL L A    
Sbjct: 236 LAPQVNELILDACAAPGGKSCHLLELEPSINLVAVDFDAKRLERVQQNLDRLSLKAELIH 295

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +    LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 SDAANIGSWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +      +       + I           
Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425


>gi|24371630|ref|NP_715672.1| sun protein [Shewanella oneidensis MR-1]
 gi|46396921|sp|Q8EKR0|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|24345386|gb|AAN53117.1|AE015454_11 sun protein [Shewanella oneidensis MR-1]
          Length = 428

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 200/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 1   MNLRALAAKAIFDVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
                 L   L  K+  + QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRTAECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y       I  +   P     +  
Sbjct: 116 NGVLRNIQRQLTPLSNESETLSYNTPGWLIKRLKTAYPGNWQEIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +    + +   L+     A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 176 LSQSRDEYLAALDKLEIDASAGLSDDAILLAAPKDVATLPLFLEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLIAVDFDAKRLERVQQNLDRLSLKAEVIH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  QR++L    
Sbjct: 296 GDAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +        +  A  + I           
Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLVQQASSQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QHNMDGFYYARLLK 425


>gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3]
 gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3]
          Length = 434

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 9   MNVRAAAASALYQVVDLGHSLSDALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 64  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432


>gi|168182584|ref|ZP_02617248.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum Bf]
 gi|182674127|gb|EDT86088.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum Bf]
          Length = 442

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+  +L  V+ +      +L  +   S    L   D+ L+  IV  TL++   +D 
Sbjct: 3   NAREVALDVLKAVLFESAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119
           ++   L + +     ++  +LR+++ QI YLD +  +A V+ AVE +K+           
Sbjct: 60  IIQSYLRNPIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119

Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                + +   +   +    L++ + +   P+W  +   + YG E    I         I
Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D +    KL           +          ++I   P F EG   VQD S
Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +            VLDLC+APGGKT  +   + + +KV A D+ + +L  +  N  RL
Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDIHQNKLSLIESNAKRL 299

Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   +    DA  +  K  +    VL+D PCS  G IR+ P++ WT++  +I      Q
Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           RK++  G S++K GGI+++S C+L+K+++EE +   L+      ++ PL      +I   
Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EG++ I P+           MDGFF   L++
Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441


>gi|149203489|ref|ZP_01880459.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. TM1035]
 gi|149143322|gb|EDM31361.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. TM1035]
          Length = 422

 Score =  259 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 151/438 (34%), Positives = 232/438 (52%), Gaps = 19/438 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K  + AR  ++HLL  V+ +      L+       A   L+  D+   + + + TLR L 
Sbjct: 3   KPKLTARSAAAHLLDRVLGEGR----LMSDLIAGGALEPLAPADRARAQRLASETLRGLA 58

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R D +L   L    P     +Q +LR++  ++       + VV+ AV+   +   + +  
Sbjct: 59  RADRLLSRHLRKGPP---LPVQNVLRLATVELAQGG-ESHGVVNDAVDIIGQSPRHANLK 114

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LR+V+ E       +     +P+W +  L   +GK  V A+  A  +   +D+T
Sbjct: 115 GLVNAVLRKVAEEAPRSWNDL-RQPGLPDWLRGPLVEAWGKGAVTAMERAHFAGAALDIT 173

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D + WA +L A +LPTG +R +  P  + +LPG+AEG WWVQDA+A++PVQ+     
Sbjct: 174 VKSDPQGWADRLGATLLPTGSLR-RSDPGQVSALPGYAEGAWWVQDAAAALPVQVLAPQP 232

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             +VLDLCAAPGGKT QL  +GA+VTALD+S+RR+ ++  NL R  L A   +E      
Sbjct: 233 GETVLDLCAAPGGKTLQLAAAGAEVTALDLSERRMARVAENLARTGLEATCRVE--DARA 290

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                +DA+L+DAPCS+TGTIRRHPD+   +D  D       Q ++L   ++ +KPGG +
Sbjct: 291 HQGGPYDAILLDAPCSATGTIRRHPDLPHAKDGSDFGALITLQAEMLDHALTLLKPGGRL 350

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VF  CSL   + E  V++ L   P    L    +A  +       ++ EG +R+ PD   
Sbjct: 351 VFCTCSLLPDEGECQVEEALARHPG---LTVDRAALAQPGIDPAWITEEGGLRLRPDYWA 407

Query: 422 KIDGVSSGMDGFFAVALR 439
            +     GMDGF+   LR
Sbjct: 408 DL----GGMDGFYIACLR 421


>gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3]
 gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3]
          Length = 426

 Score =  259 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 205/454 (45%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +S RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGHSLSHALP-----AAQKTISPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++ + L  KK     L+ V + Q+ ++ +  +A V   VE  K  +     + L+
Sbjct: 56  SIANELMENPLKGKKRVFHHLILVGIYQLSFMRIPSHAAVAETVEGTKTLRGP-SLSGLI 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++ EL +      AG    P W  + L+  Y ++    I      +P+++ 
Sbjct: 115 NAVLRSYLRDQEELDEKAVSHNAGKYGHPSWILKMLQESYPEQWEQLIEANNSKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +                P  +  LPGF +G   VQDA+A +
Sbjct: 175 VNRQHHTRDEYVELLKNENIEYTLHSEAADAIKLASPCDVTLLPGFDKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V      +   +LD CAAPGGKTA      +  +V A+D   +RL+++  NL+RL L A
Sbjct: 235 SVDYLTPKDGELILDCCAAPGGKTAHILEHTNDTEVVAIDCDIKRLDRVYDNLERLQLRA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++     FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q +++
Sbjct: 295 DVICGDARYPEEWWMGDKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAELQSEIM 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++   V+  L  +              ++  +  +  
Sbjct: 355 DAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERT--------------ENATLVGSDI 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +I P            MDGF+   L +  
Sbjct: 401 ENPGRQILPG--------EEDMDGFYYAVLVKQA 426


>gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
 gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
          Length = 426

 Score =  259 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 202/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L       A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGQSLSNALPT-----AQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + QI ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SISQALMEKPLKGKQRVFHFLILVGLYQISFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   RE+     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQREQERLDAQATSHDAGRYGHPSWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHSRDEYQALLEQAEIASEPHSQAEDALCLVNPCDVNQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL++++ NL RL L A
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      D+   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  QR++L
Sbjct: 295 QVICGDARYPQDWWQDEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENCLQVKAFLERTP-EASLVGSDPAQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424


>gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99]
 gi|224493254|sp|B2VK95|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99]
          Length = 429

 Score =  259 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L      +A + +  +D  L++ +    LR L
Sbjct: 1   MKKMTNLRCIAAQTIEKVVEQGQSLSNVLP-----AAQKSVGDKDAALLQELCYGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ V+  ++   +  K+ ++  L+ V + Q+++  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWVIGRLMSRPMTGKQRAVHFLIMVGLYQLMFTRIPAHAALAETVEGAVALKRPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +    +R   E ++ +       + P+W  ERL+  +  + + +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPAQWKQIVDANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L             G     E P ++  LPGF +G   VQD S
Sbjct: 175 WLRVNRQHHSRDAWLTLLEESGKQAFAHPQHGDALRLESPCAVGQLPGFDQGWITVQDVS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V L    +   +LDLCAAPGGKT  ++ +  +  V A+DV  +RL ++  NL RL 
Sbjct: 235 AQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVMAVDVDAQRLARVSENLQRLT 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D      +C    FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MQAE-VKQGDGRTPAAWCGDTQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L      +KPGG ++++ CS+  +++   + + L+       +   +          
Sbjct: 354 QQILDAVWPHLKPGGTLLYATCSVLPEENHVQIGQFLQRHADATLIETGDLTQP------ 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I++ P         + G DGF+   L +
Sbjct: 408 -------GIQVFPQ--------ADGGDGFYYAKLVK 428


>gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7]
 gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7]
          Length = 429

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 199/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 2   MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 58  KRVAECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 116

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y       I  +   P     +  
Sbjct: 117 NGVLRNIQRQLTPLSTESETLSYNTPGWLIKRLKAAYPDNWQEIILQSHERPPMWLRNNR 176

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +    + +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 177 LSQSRDAYLATLSELEIEASAGLSDDAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 236

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  VLD CAAPGGK+     +    ++ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 237 LAPQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIH 296

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  QR++L    
Sbjct: 297 GDAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHSW 356

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +           A  + I           
Sbjct: 357 KWLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLAQQASSQDIGW--------- 407

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 408 -QITPG--------QHNMDGFYYARLLK 426


>gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587]
 gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2]
 gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587]
 gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2]
          Length = 434

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 9   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 64  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 183 VNHQYHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432


>gi|294010239|ref|YP_003543699.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S]
 gi|292673569|dbj|BAI95087.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S]
          Length = 429

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 155/444 (34%), Positives = 219/444 (49%), Gaps = 27/444 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR  +  LL  V+R+   L   L       A + L+  D+ LV AI   TLR LP 
Sbjct: 11  PGLPARRAALRLLDAVLRRGDPLELAL-----HGAAQGLAPADRALVHAIAAETLRHLPD 65

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DA++D      LP      + +LR+++ Q+L L  A +A +  A+     D   R    
Sbjct: 66  LDALIDGATRQPLP-HDAKARMVLRIALIQVLALGTAPHAAIATALPLV--DGGPRKLVH 122

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            V   L R                 +P     R    +G     A + A      +D+++
Sbjct: 123 GVFGTLTRADPTLPSP-------PALPPETAGRWAAQWGDAMPQAAAHAYAQRPPVDVSL 175

Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +    T  WA  LN   L  G +RL E    I  LPGF EG WWVQD +AS P +L G  
Sbjct: 176 RDPARTAHWAEALNGRSLAPGHVRLPEGAV-IPDLPGFGEGAWWVQDLAASTPARLLGAG 234

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLCAAPGGKT QL  +G +VTA+D SK+RLE+L  NL R  L A  + + D   
Sbjct: 235 EGRCVLDLCAAPGGKTMQLAAAGWRVTAVDQSKKRLERLSENLARTGLSAAIV-QDDLRA 293

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P+   DAVL+DAPC++TG  RRHPDVL       I + A  Q +LL +  +++KPGG 
Sbjct: 294 WRPEAPADAVLLDAPCTATGIYRRHPDVLHRIGPRQIAEMAELQAELLARAAAWLKPGGT 353

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CSL++ + E+ V + L + P    L     A    +   +A + +GW+R  PD+L
Sbjct: 354 LVYATCSLEQAEGEDQVARFLDARPDFGPL----PAMPAELPDGIAPAAQGWVRTLPDIL 409

Query: 421 EKIDGVSSGMDGFFAVALRRLIQP 444
                   G DGFF   L R  +P
Sbjct: 410 A----AQGGTDGFFVARLIRSTKP 429


>gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           TMA 21]
 gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           bv. albensis VL426]
 gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           bv. albensis VL426]
 gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           TMA 21]
          Length = 426

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424


>gi|304412733|ref|ZP_07394336.1| sun protein [Shewanella baltica OS183]
 gi|307305802|ref|ZP_07585548.1| sun protein [Shewanella baltica BA175]
 gi|304348943|gb|EFM13358.1| sun protein [Shewanella baltica OS183]
 gi|306911295|gb|EFN41721.1| sun protein [Shewanella baltica BA175]
          Length = 428

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 197/448 (43%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  +    +R LP+I+
Sbjct: 1   MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL +   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y ++    I  +   P     +  
Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +      +   L      A    +    L   P+ +  LP F EG   VQD +A     L
Sbjct: 176 LSQSRTEYLAALAELEIEASEGSSADAILLAHPKDVAILPRFHEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +     FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +              + I           
Sbjct: 356 KWLKPGGTILYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425


>gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385]
 gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385]
          Length = 434

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 9   MNVRAAAASALYQVVDLGRSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 64  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENLLQVKAFLERTP-DARLVGSDPAQP---------- 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432


>gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39]
 gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51]
 gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226]
 gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51]
 gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39]
 gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226]
          Length = 434

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 9   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 64  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432


>gi|307244450|ref|ZP_07526559.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492143|gb|EFM64187.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
           stomatis DSM 17678]
          Length = 447

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 110/467 (23%), Positives = 203/467 (43%), Gaps = 50/467 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR ++  +L  +          L+    +     L  +D+  V  +V   +     +D
Sbjct: 1   MSARYLAYKILFDIEVNGNYSNMALNKYLNE---AGLDDQDKGFVTELVYGIIEKKRYLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++ V    + + ++S++ +LR+ V Q++Y+D V DYA ++ +V   K+   ++  A  
Sbjct: 58  YMINKVSKIKVRKMQHSVKLVLRMGVYQLVYMDGVTDYAAINESVNIMKK--LDKRSASF 115

Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN++LR +SR   E+           A       W  E L   YG ER  AI  A     
Sbjct: 116 VNAVLRNISRNLDEVKDISLNTVDKLAIYYSYENWIVENLVKEYGFERTEAILRALSQKP 175

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES-----------------IVSLPGFA 219
            I L V          ++ ++    G  + +  E+                 I   P F 
Sbjct: 176 NIYLRVNRTKLRPGQSMDYLVGQIIGRIIDQGLEASRVEGLEEAIKVKGLKSIDKHPLFR 235

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276
           EG   VQD S+ +  ++        VLDLCAAPGGK+  +   + +   + + D+   ++
Sbjct: 236 EGYVSVQDISSILVAKVMNPKRESRVLDLCAAPGGKSTHIGELMENTGHLISQDIFDHKI 295

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           + +     RL L   +    DA          FD VL D PCS  G +RR P++ + +  
Sbjct: 296 KLMNTYARRLGLNNMEARLGDALVLNDDYIGKFDYVLCDVPCSGMGIVRRKPEIKY-KKE 354

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           ++++     Q ++L    S++K GGI+++S C++ +Q++ EVV + L +          +
Sbjct: 355 EEVLNLPDLQYQILENASSYLKEGGILIYSTCTIFRQENMEVVDRFLANHKDF------D 408

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                S+   + +  +  ++I PD  E        MDGFF   ++++
Sbjct: 409 LDDLGSVKEFLGIGDKDLVKILPDRYE--------MDGFFICRMKKI 447


>gi|225418642|ref|ZP_03761831.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme
           DSM 15981]
 gi|225041829|gb|EEG52075.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme
           DSM 15981]
          Length = 457

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 112/470 (23%), Positives = 199/470 (42%), Gaps = 44/470 (9%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M      G+  R +   +L  V+ +   +  +L+       ++ L + D+  +  +   T
Sbjct: 1   MAKRTDRGLENREIVLDILMEVLERGSFVHMVLNQAL--DKYQYLDKADRAFITRLTEGT 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
           L +L +IDA+++    +   + K  ++ LLR+SV QILY+D V D AV + AV+ A + +
Sbjct: 59  LEYLIQIDAIINQYSKTKTQKMKPVIRNLLRLSVYQILYMDRVPDSAVCNEAVKLAAK-R 117

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACIS 174
                   VN +LR ++REK  +      +   +P+W  E  E  YG     A+  A + 
Sbjct: 118 RFEGLKGFVNGVLRTIAREKGTIAFSEPWLELSLPQWMYEMWERQYGAGTATAMGKAFLK 177

Query: 175 PLYIDLT------------------VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
                +                    +   E+   +         G+      + +  L 
Sbjct: 178 DKKTTVRCNLQALSRELPGISPEEAWERTAESLREQGVEAAPLGDGLFNLSGYDRLEELS 237

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSK 273
            FA G   VQDAS+++  +L        V+D+CAAPGGK+  +         V A D++ 
Sbjct: 238 AFARGWIQVQDASSAMVGRLAAPKRGDYVIDVCAAPGGKSLHIADLLDGTGMVEARDLTF 297

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           ++ E +  N+ R        + MDA     +  +  D ++ D PCS  G + + PD+   
Sbjct: 298 QKAELIEENIRRCGFENIRAVVMDALWEDEESVEKADLLIADLPCSGLGILGKKPDIKQN 357

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
              + + + A  QR++L     +VKPGG +++S C++D  ++EE  +    + P      
Sbjct: 358 MTQEKMKELADLQRQILSVVWRYVKPGGRLIYSTCTVDSMENEENARWFAGNFP----FE 413

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           P++          +    EGWI+  P +          MDGFF     R 
Sbjct: 414 PVDLRPALEPRFPVESLKEGWIQFLPGI--------HPMDGFFISVFTRK 455


>gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
 gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
          Length = 427

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 210/453 (46%), Gaps = 44/453 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSNALP-----AAQQNVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERV-LAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y ++   +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRSQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    + +              P  +++LPGF +G   VQDA+A +
Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHSQAMDALKLAAPCDVMTLPGFEKGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +      +   +LD CAAPGGKTA      SG++V A+D    RL+++  NL RL+L A
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  Q ++ 
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAALQSEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +KPGG +V++ CS+  Q++ E V+  L  +    +LV                 
Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLART-ADAQLVDSEPHQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +I P            MDGF+   L + 
Sbjct: 404 ---GRQILPG--------EEDMDGFYYAVLTKK 425


>gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1]
 gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1]
          Length = 429

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 200/448 (44%), Gaps = 35/448 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K +SL+  L  +    A    S +D+ L+  I    +R LP+I+
Sbjct: 1   MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAEICYGVMRTLPQIE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +   L   L  K+  + QLL V   Q+ +  +  +A +    E A R  +     K+V
Sbjct: 57  KRISECLEKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115

Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181
           N +LR + R+   L      +    P W  +RL+  Y ++    I  +   P     +  
Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175

Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +      +   L      A    +    L   P+ + +LP F EG   VQD +A     L
Sbjct: 176 LSQSRTEYLAALAELDIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                N  +LD CAAPGGK+     +    K+ A+D   +RLE+++ NLDRL L AE I 
Sbjct: 236 LAPQVNELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +   +    LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q+++L    
Sbjct: 296 GDAANIGSWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KPGG ++++ CS+  Q++ + +   L  +      +       + I           
Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGW--------- 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +ITP            MDGF+   L +
Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425


>gi|227824651|ref|ZP_03989483.1| SUN protein [Acidaminococcus sp. D21]
 gi|226905150|gb|EEH91068.1| SUN protein [Acidaminococcus sp. D21]
          Length = 445

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 112/465 (24%), Positives = 184/465 (39%), Gaps = 45/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R ++  +L  +  +       L+          LS  D+ L   +V  T++  
Sbjct: 1   MHDAQNPRELALLVLDEIYERGAYANLALNKALR---GNGLSSLDRKLCTELVYGTVKTT 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             +D  L  V+     +    L+ +LR+   QILYL  + D A V+     A R   N +
Sbjct: 58  GTLDWYLCRVINRPFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLA-RYYVNEN 116

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
             KLVN +LR++SR K                A     PEW   R +  +G     A+  
Sbjct: 117 SVKLVNGVLRQLSRTKATWQFPQKEEDATLRLALTYYHPEWLVRRWKFRFGLPEAEAMCA 176

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEG 221
              +   + L V       +T   +L A          +    +     S+ +L      
Sbjct: 177 YDNAVPSLCLRVNTLFISRKTLLERLQADGCEVEPSKWSPDGIVCRHLPSLETLMKEWGR 236

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278
             ++QD S+ +   +        VLD CAAPGGKT      + +  K+ A+D+   RL  
Sbjct: 237 FLYIQDESSMLDADVLAPKPGDLVLDFCAAPGGKTTHLAQKMENKGKIIAMDIHDHRLTL 296

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N  RL +     +  D     P      DAVLVDAPCS  G + R  +  WT+    
Sbjct: 297 IEENATRLGITNIRALLHDGTKPLPGFENRADAVLVDAPCSGLGVLNRRAEARWTKKERT 356

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           + +    Q+K+L Q  + VKPGG +++S C+L++ ++  V    L S P       L+  
Sbjct: 357 LSQFPPLQKKILAQAAACVKPGGRLLYSTCTLERDENSRVRTAFLESHPEFRSKAFLHPV 416

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + ++          ++I P           G+DGF+     ++
Sbjct: 417 TGERVEE---------LQILP--------WRDGIDGFYLALFEKV 444


>gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           12129(1)]
 gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           12129(1)]
 gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           LMA3894-4]
          Length = 426

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  +  R    L+
Sbjct: 56  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLQGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424


>gi|54310619|ref|YP_131639.1| putative Sun protein [Photobacterium profundum SS9]
 gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9]
          Length = 431

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 121/452 (26%), Positives = 208/452 (46%), Gaps = 38/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ ++  V+ +  SL+  L      +A + + +RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAAQVVFQVVDQGQSLSAALP-----AAQQNIRERDHALLQEICYGVLRWLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+ +   L+ V + Q+ ++ +  +A V   V   K  K+ +    L+
Sbjct: 56  SITTHLMDKPLKGKQRAFHHLILVGLYQLGHMRIPAHAAVAETVNATKDLKKTQ-LRGLI 114

Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYID 179
           N+ILR   R++ +     +   AG    P W  + L+  Y ++   +  ++   +P+++ 
Sbjct: 115 NAILRNYQRQQEQLDAQSVSHDAGKYGHPSWLLKMLKASYPEQLEAIVTANNTKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   LN V + T              P  +  LPGFA+G   VQD +A +
Sbjct: 175 VNRQHHTRDEYRALLNDVGIETDLHPEAADALRLLSPCDVSKLPGFADGWSSVQDGAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYA 290
            V          +LD CAAPGGKTA ++       V A+D  +RRL ++  NL RL L A
Sbjct: 235 AVDFLQPQAGELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVYENLARLKLDA 294

Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      D+   + FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q ++ 
Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAILQAEIF 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++ E V+  L  +         ++        A +  
Sbjct: 355 DAMWLQLKSGGTLVYATCSITPQENSEQVKAFLART--------ADATLINRGQEADSDM 406

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P          S MDGF+   L++
Sbjct: 407 EHPGRQILPG--------ESDMDGFYYAVLQK 430


>gi|261342758|ref|ZP_05970616.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
           cancerogenus ATCC 35316]
 gi|288314937|gb|EFC53875.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
           cancerogenus ATCC 35316]
          Length = 428

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 206/456 (45%), Gaps = 45/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKK-QNLRSMAAQAVEKVIEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++  ++   +  K+ S+  L+ V   Q+L+  +  +A +   VE A   K  +  
Sbjct: 55  SQLEWMISRLMARPMTGKQRSVHYLIMVGFYQLLHTRIPPHAALAETVEGAIAIKRPQ-L 113

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKER-VLAISDACISPL 176
             L+N +LR+  R++ ELL   A      + P+W   RL+  Y  +   +A ++    P+
Sbjct: 114 KGLINGVLRQFQRQQEELLAEFAQTEKRFLHPDWLLNRLKKAYPTQWQAIAEANNQRPPM 173

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGF EG   VQDAS
Sbjct: 174 WLRVNRTHHKRDEWLALLEESGMSGFIHEAYPDAVRLASPAPVHALPGFEEGWVTVQDAS 233

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT     +   A V A+DV ++RL ++  NL RL 
Sbjct: 234 AQGCMTWLEPKNGEKILDLCAAPGGKTTHILEVAPQADVLAVDVDEQRLSRVYDNLKRLG 293

Query: 288 LYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D            FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 294 MKA-QVKQGDGRTPADWCGNTQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQ 352

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             +L      +K GG +V++ CS+  +++ + +   L+ +P                 + 
Sbjct: 353 SDILDAIWPHLKAGGTLVYATCSVLPEENSQQIAAFLKRTPDAA--------------LH 398

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +PE          ++    +   DGFF   L +
Sbjct: 399 DTGTPE-------QPGQQNLPGAEEGDGFFYAKLIK 427


>gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae
           DSM 12163]
          Length = 456

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 218/457 (47%), Gaps = 44/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L      +A + +  +D  L++ +    LR L
Sbjct: 28  MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKSVGDKDAALLQELCYGVLRTL 82

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ ++  ++   +  K+ +L  L+ V + Q+++  +  +A +   VE A   K  +  
Sbjct: 83  PQLEWIISKLMSRPMTGKQRALHFLIMVGLYQLMFTRIPPHAALAETVEAAVALKRPQ-L 141

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +    +R   E ++ +       + P+W  ERL+  +  + + +  ++    P+
Sbjct: 142 KGLINGVLRQFQRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPVQWQQIVAANNQRPPM 201

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229
           ++ +       +TW   L                   ELP ++  LPGF +G   VQDAS
Sbjct: 202 WLRVNRQHHSRDTWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQDAS 261

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V L    +   +LDLCAAPGGKT  ++ +  +  V A+DV  +RL ++  NL RL+
Sbjct: 262 AQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLN 321

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+AE +   D      +C  +LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 322 LHAE-VKLGDGRTPAAWCGDRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 380

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L     ++K GG ++++ CS+  +++   + + L+     V +   +          
Sbjct: 381 QQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANAVLVETGDLTQP------ 434

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   I++ P +         G DGF+   L + 
Sbjct: 435 -------GIQVFPQV--------DGGDGFYYAKLVKK 456


>gi|88801025|ref|ZP_01116574.1| hypothetical protein MED297_05044 [Reinekea sp. MED297]
 gi|88776228|gb|EAR07454.1| hypothetical protein MED297_05044 [Reinekea sp. MED297]
          Length = 427

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 209/447 (46%), Gaps = 34/447 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N RL+++ +L  V+ +  SL   L           +    Q  ++ +V  + R+   +D
Sbjct: 2   TNTRLIAAEILLQVVDEGRSLNDELPRRLKH-----IDPDQQAFLQQLVYGSTRYYFALD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++ ++   +  K+  +  LL + + Q+ +LDVA++A ++  VE A    + +    LV
Sbjct: 57  ELINLLVEKPIRGKERLVHMLLAIGLYQLWHLDVAEHAAINETVE-ATLTAKKQWAKNLV 115

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYIDLTV- 182
           N+ LRR  RE+  +L ++      P W  +RL   Y ++   + +      P+ + +   
Sbjct: 116 NASLRRFQRERETILPQLRRTESFPGWLNKRLRQAYPEQFADICVQSNQPGPMTLRINRR 175

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQL 236
               E W        L                P  +++LPGF +G   VQD +A +   L
Sbjct: 176 MMTREAWLLLAIKEGLVAHSTNHSPVGATLASPAPVLALPGFEDGALSVQDEAAQMCATL 235

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
               +   VLD C+APGGKT  L   +  ++ A+D+ + RL +++ NL+R+ + AE I E
Sbjct: 236 LPVTDGQRVLDACSAPGGKTGHLLEKADIELVAIDIDEHRLGRVQENLERIGVSAELIAE 295

Query: 296 --MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              +   +     FDAVL+DAPCS TG IRRHPD+   R + DI   +  Q +LL +   
Sbjct: 296 DAAEIERWWDGVPFDAVLLDAPCSGTGVIRRHPDIKLLRKSADIKALSQVQSRLLDRLWG 355

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG ++++ CS+   ++ + +   L++ P   E         + + +   +  E  +
Sbjct: 356 TVKPGGYLLYATCSVLPDENTDRIAAFLQAHPEAQE---------QPLALQADVDTEHGV 406

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  P         S G DGF+   L++
Sbjct: 407 QWLPQ--------SDGHDGFYYALLKK 425


>gi|255282547|ref|ZP_05347102.1| ribosomal RNA small subunit methyltransferase B [Bryantella
           formatexigens DSM 14469]
 gi|255266840|gb|EET60045.1| ribosomal RNA small subunit methyltransferase B [Bryantella
           formatexigens DSM 14469]
          Length = 453

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/461 (21%), Positives = 187/461 (40%), Gaps = 39/461 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +N R +    L  +  +      +L        ++ L +RD+  +   V  T+  + +ID
Sbjct: 7   VNTREIILGALMAITEEEQYCHIVLRDVLA--KYQYLEKRDRAFISRTVEGTMENMIQID 64

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L+      +   K +++ +LR+S+ Q+ Y+D V   AVV+ AV+  ++ K        
Sbjct: 65  YILEQFSTVKVQNMKPAIRNILRMSIYQMQYMDGVPHAAVVNEAVKLTQK-KGFYTLKGF 123

Query: 124 VNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR         R    +    + ++    +PEW  ++    +    V  I      
Sbjct: 124 VNGVLRAAERGIGEVRFPDAERTPRKYLSVRYSMPEWILQKWLAQFDFATVEKICRGLWQ 183

Query: 175 PLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWV 225
                +         ET   KL    +    +              + ++  F EG++ V
Sbjct: 184 ESRTCIRCNLSRAPKETIIEKLREQNITVKEVPYLPYALEISDYNYLQAINAFKEGLFQV 243

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282
           QD S+ +  ++         +D+CAAPGGK+  L         V A D++  ++  ++ N
Sbjct: 244 QDVSSMLVAEVAAPKWGDYCIDVCAAPGGKSLHLSDKLNGSGYVEARDLTDYKVSLMQEN 303

Query: 283 LDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           L+R        I  DA  +     +  D +L D PCS  G I R PD+ +        + 
Sbjct: 304 LERTGRINMTAIRQDATVFDGASVEKADILLADLPCSGLGVIGRKPDIKYKMTEAKQQEL 363

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QRK+L    S+VK GG +++S C++   +++  V+  L + P  +E +         
Sbjct: 364 VKLQRKILDTVWSYVKVGGTLIYSTCTIGADENQYNVKWFLENYPFRLESIDPYLCDA-- 421

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +    +  G++++ P +         G DGFF    +R+
Sbjct: 422 --LKSRTTKAGYLQLLPGV--------HGTDGFFIARFKRV 452


>gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 429

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 214/456 (46%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----QKSISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++ELL+R A      + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSHYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +                P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVSRLHHSRIEYLGLLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V L        +LDLCAAPGGKT  ++     A V A+D+ ++RL +++ NL RL 
Sbjct: 235 AQGCVDLLDPQEGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLK 294

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A D+   D     ++C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 LHA-DVRVGDGRTPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +++      +K GG++V++ CS+  +++++ +   L+      +LV   +         
Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRH-SEADLVETGTVSAPG---- 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++        DGF+   L +
Sbjct: 409 ----------------KQNLPHPEDGDGFYYAKLIK 428


>gi|322806774|emb|CBZ04343.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum H04402 065]
          Length = 442

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+  +L  V+ +      +L  +   S    L   D+ L+  IV  TL++   +D 
Sbjct: 3   NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119
           ++   L + +     ++  +LR+++ QI YLD +  +A V+ AVE +K+           
Sbjct: 60  IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119

Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                + +   +   +    L++ + +   P+W  +   + YG E    I         I
Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D +    KL           +          ++I   P F EG   VQD S
Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +            VLDLC+APGGKT  +   + + +KV A DV + +L  +  N  RL
Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRL 299

Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   +    DA  +  K  +    VL+D PCS  G IR+ P++ WT++  +I      Q
Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           RK++  G S+++ GGI+++S C+L+K+++EE +   L+      ++ PL      +I   
Sbjct: 360 RKIMNNGASYLEEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EG++ I P+           MDGFF   L++
Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441


>gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
           330286]
 gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           INDRE 91/1]
 gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC27]
 gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
           330286]
 gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC27]
 gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           INDRE 91/1]
          Length = 426

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424


>gi|71278391|ref|YP_266800.1| sun protein [Colwellia psychrerythraea 34H]
 gi|71144131|gb|AAZ24604.1| sun protein [Colwellia psychrerythraea 34H]
          Length = 440

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/458 (25%), Positives = 201/458 (43%), Gaps = 42/458 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +N R +++     V+ +  SL+  L           L  +D+ L++ I    LR+LP ++
Sbjct: 3   INIRALAAKCCYAVIDQGRSLSDELPK-----QQDKLIGKDKGLLQEICYGVLRYLPELE 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +  ++   +  K+     LL V V QI Y+ + D+A V   V  A +  +N H   LV
Sbjct: 58  NDVSQLVQKPIKGKQRVFHFLLLVGVYQIRYMRIPDHAAVSETV-AATKTLKNDHMKGLV 116

Query: 125 NSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR              K +           P WF ++++  Y  +    +      P
Sbjct: 117 NAVLRGFLRALEAENKQVNKTDKKIPDPIKYNHPGWFIKKIQQAYSDQWQAILDANQQKP 176

Query: 176 -LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQD 227
            +++ +  +         L                         +  LPGF +G   +QD
Sbjct: 177 PMWLRVNQQHHTSEQYQALLEEAEIEIAHVEPNSQAIELAKPLDVAKLPGFDDGWVSIQD 236

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLD 284
            +A    +L     N  VLD CAAPGGKT  +I        +TA+D+ + RL ++  NLD
Sbjct: 237 GAAQQAARLLDCQPNDIVLDCCAAPGGKTCHIIEQTPDIASMTAIDIEEGRLTRVHENLD 296

Query: 285 RLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           RL+L       +    ++   + FD +L+DAPCS TG IRRHPD+ W R  DDI K    
Sbjct: 297 RLNLTANVITADAATQNWWSGEQFDRILLDAPCSGTGVIRRHPDIKWLRKADDIDKLVVL 356

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+++L    S +KPGG ++++ CS+  +++   + + +  +    +L+ +N    ++   
Sbjct: 357 QQQILDNIWSLLKPGGTLLYATCSVLPEENSLQISRFIEQN-QDAQLIAINGNTPETDKN 415

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           A+        ++ PD        +  MDGF+   L +L
Sbjct: 416 AIG------WQLLPD--------AENMDGFYYAKLLKL 439


>gi|160933495|ref|ZP_02080883.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
 gi|156867372|gb|EDO60744.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
          Length = 446

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/462 (22%), Positives = 185/462 (40%), Gaps = 38/462 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +G NARL +   L  V   +     +LD     S    L  RD     A+    L   
Sbjct: 1   MSAGKNARLTALKALLRVEEGKGYSNLVLDHGLAAS---GLDGRDAAFASALFYGVLERR 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  +       L +    ++++LR+   Q+LY+D V   A V+ +V+  +  K+++ 
Sbjct: 58  ITLDYQISRYSKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRAVKKDK- 116

Query: 120 FAKLVNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            +  VN ILR   R+              +      P+W  +     YG+ER L + +  
Sbjct: 117 ASGFVNGILRSFIRDGCPCRLPAETADDYLMVKYACPQWIIDLWITSYGRERALELVENL 176

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVW 223
                + + V       E    +L    + T            E   SI SL  F +G +
Sbjct: 177 TGRPPLAVRVNSCKTTREALTERLKEEGVETKEVPGVEQALTLERSGSIESLSSFQDGFF 236

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD ++ +  Q         V D+CAAPGGKT  +   + +  ++++ D+   +++ ++
Sbjct: 237 HVQDLASQLCCQALSPKPGERVYDVCAAPGGKTFTMAELMENQGELSSFDLYPAKVKLIQ 296

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
               RL L   +    DA          D VL D PCS  G IRR P++ + ++ + +  
Sbjct: 297 QGAKRLGLSVVNARIRDAAHPEEMLPPGDKVLCDVPCSGLGIIRRKPEIRY-KNKNMLDS 355

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L    +  K  G++++S C+L+  ++ +V ++ L   P   E  P++     
Sbjct: 356 LPDLQYLILCISANLTKKHGVLLYSTCTLNPGENNQVARRFLLEHP-DFEPYPVSLPEGY 414

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +     +              +    +G DGFF    RRL
Sbjct: 415 ERNSFDRENE-----------ATLFVKKNGTDGFFFSGFRRL 445


>gi|108760453|ref|YP_629658.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
           DK 1622]
 gi|108464333|gb|ABF89518.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
           DK 1622]
          Length = 438

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 187/456 (41%), Gaps = 38/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR ++  +L+ V      L  +LD +  +S  +    RD  LV  +     R    +D
Sbjct: 1   MNARALAIQVLARVRATDAYLNVVLDTQLSESPPK--DPRDAALVTELTYGATRRQLALD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +       L   +  +   LR+   QI +  V   A V   V+  K     R  A   
Sbjct: 59  YAITRFADRKLDALEDKVLAALRIGAYQIFHTRVPARAAVAETVQALKEVGLTR-AAGFT 117

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N+ILR+++      L         ++     P+W  ER    +G+ER  A+  A      
Sbjct: 118 NAILRKLAALPAPPLPPASDVALHLSVRESHPQWLVERWLRQFGRERAEAMLVADNQAPA 177

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + +         +    +L  + +      +            +  + G+AEG+W VQD 
Sbjct: 178 VVVRANTAKVTRDALLAQLQEMGVDAKATTVSPVGITLPSVGRVEDVYGYAEGLWQVQDE 237

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +A +            VLD CAAPGGK+     S   V A+D+   +L K+     RL L
Sbjct: 238 AAQLVGVYGAIPETARVLDACAAPGGKSCHQAQS-HDVVAVDLHAHKLRKIEAEARRLGL 296

Query: 289 YA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                    +           F A LVDAPCS  GT+RRHP++ + R  +DI + A  QR
Sbjct: 297 QPRLKAYAHDAAEPFPEEWGEFHAFLVDAPCSGLGTLRRHPELRYRRKEEDISRLATLQR 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      V PGG++V++ C+++ Q+ ++ V+  LRS P      P+       +  A 
Sbjct: 357 RILENCQDAVPPGGLLVYAVCTMEPQEGQDQVEMFLRSHPEWTAEPPVLPGLKLPMSQA- 415

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++R  P           G DGFFA  LR+L
Sbjct: 416 ------YLRTLPG--------PEGFDGFFAARLRKL 437


>gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
           11079-80]
 gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
           11079-80]
          Length = 426

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 200/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE  +  K  R    L+
Sbjct: 56  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGTQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424


>gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           B33]
 gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC9]
 gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MJ-1236]
 gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
           CIRS 101]
 gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC9]
 gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           B33]
 gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MJ-1236]
 gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
           CIRS 101]
          Length = 426

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 200/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV    A            
Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSEPAQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424


>gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80]
 gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52]
 gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395]
 gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457]
 gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2]
 gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MAK 757]
 gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80]
 gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52]
 gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457]
 gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395]
 gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2]
 gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395]
 gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MAK 757]
          Length = 434

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 9   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 64  SISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432


>gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b]
 gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b]
          Length = 443

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 193/456 (42%), Gaps = 35/456 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  +   L  + +     T  ++        + ++ +D  L   +V  TL     +D
Sbjct: 1   MNVREAALDTLMKIEQGGAYSTIAVNDTLK---QKKVAPKDVGLYTELVYGTLSRKGTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L   +  S  +    +  LLR+SV Q+ YLD V D AV+  AVE AK+   +   +K 
Sbjct: 58  YILKDRI-RSPKKLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGHHLGTSKF 116

Query: 124 VNSILRRVSREKIELL------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN +LR V RE           +RIA     PEW        YG E   AI      P  
Sbjct: 117 VNGVLRNVLREGFPDFSSLTDAERIAIEHSHPEWLVSDWIELYGVETAEAICRLNNEPAP 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDAS 229
           + + V       +   ++L    + T         L     ++ + P   EG+  +QD S
Sbjct: 177 VTIRVNRKRISVDEMMNRLADAGVMTSRSELSADGLVVESGNVHATPFIEEGLLSIQDES 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           + I     G   +  +LD CAAPGGK       + G  +TALD+   + + +     RLH
Sbjct: 237 SMIVADALGVSKDDVILDACAAPGGKAMHTAERMQGGSLTALDLHPHKAKLIDQQAKRLH 296

Query: 288 LYAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           +     + +DA    +   ++ FD +L+D PCS  G IRR PD+ WT+D   +      Q
Sbjct: 297 INGVTALALDARLAGERFEEESFDRILLDVPCSGLGVIRRKPDIKWTKDKAQLENLPKIQ 356

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+++   +  +KPGG +V+S C++D  ++E     +L    +  E +             
Sbjct: 357 RQIIDAVLPLLKPGGTLVYSTCTIDPSENETQADYMLSKGLVWDETL---KGRLPQSVRP 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           M  S    +++ P           G DGF+  A ++
Sbjct: 414 MMESDRAELKLLPTTF--------GTDGFYIAAFKK 441


>gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
 gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 198/454 (43%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGQSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++ + L  KK     L+ V + Q+ ++ +  +A V   VE  K  +       L+
Sbjct: 56  SIANELMDNPLKGKKRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKTLRGP-SLRGLI 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++  L +      AG    P W    L   Y ++    +      +P+++ 
Sbjct: 115 NAVLRSYLRDQEALDEKAVSHNAGKYGHPNWLLNMLRENYPEQWEQLVDANNSKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +                P  +  LPGF  G   VQDA+A +
Sbjct: 175 VNRQHHTRDEYLELLKDENIEFSVHPEASDAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V      +   +LD CAAPGGKTA         +V A+D   +RL+++  NL+RL L A
Sbjct: 235 SVNYLQPQDGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDVKRLDRVYDNLERLQLRA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q +++
Sbjct: 295 DVICGDARYPQEWWSGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIM 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++   V+  L  +                  +  +  
Sbjct: 355 DAMWGQLKDGGTMVYATCSITPQENILQVKAFLERTQNA--------------TLVGSDI 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +I P            MDGF+   L +  
Sbjct: 401 ENPGRQILPG--------EEDMDGFYYAVLVKQA 426


>gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33]
 gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10]
 gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33]
 gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10]
          Length = 434

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 200/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 9   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 64  SISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +V++ CS+  Q++   V+  L  +P    LV    A            
Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSEPAQP---------- 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432


>gi|323137517|ref|ZP_08072594.1| sun protein [Methylocystis sp. ATCC 49242]
 gi|322397143|gb|EFX99667.1| sun protein [Methylocystis sp. ATCC 49242]
          Length = 471

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 172/430 (40%), Positives = 238/430 (55%), Gaps = 8/430 (1%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           ++  V++    L          S    L  RD  L R+I  V+LR L  I  VL  +L  
Sbjct: 49  IICDVVQGGHRLDECFSANAVPSRLTGLDPRDVALTRSIATVSLRRLGVIRHVLSELLEK 108

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            LPR+   L+  L  + AQ+L+LD AD+A VDLAV   + + +   FA LVN +LR + R
Sbjct: 109 GLPRQAGRLEYTLIAAAAQLLFLDAADHAAVDLAVRATRLEPKTGAFAGLVNGVLRNLLR 168

Query: 134 EKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
            + E L+  A      P W  +R    YG E   AIS   +    +D++VK + E WA +
Sbjct: 169 RREEFLELAASGEYDTPPWLAQRWRKHYGDEAAHAISAMHMLEPPLDVSVKSNPEEWARQ 228

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L+ ++LPTG +RL+    +I  LPG+A+G WWVQDA+A++P +L G   +  VLD+CAAP
Sbjct: 229 LDGLVLPTGSVRLRTRA-AIPELPGYADGEWWVQDAAAALPARLLGAKPDERVLDMCAAP 287

Query: 253 GGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312
           GGKTAQL+ + A V ALD S  RL+ L  NL RL L A DI   DA  Y   + FDA+LV
Sbjct: 288 GGKTAQLVHARAHVVALDRSAERLKLLAANLARLDLRA-DIAVGDATGY-QAQPFDAILV 345

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS+TGTIRRHPDV WT+   DI   A  Q K+L +     K GG +V+  CSL+ ++
Sbjct: 346 DAPCSATGTIRRHPDVPWTKKPGDIDTLAALQAKMLARAALLTKAGGRIVYCTCSLEPEE 405

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
            E+ +   LR +P      P+ +A       A  ++ +G +R  P      D   +G+DG
Sbjct: 406 GEQQIAAFLRRNP-DFRREPITAAEGVP---AEFINRDGDLRTLPCFWPNEDPRLAGIDG 461

Query: 433 FFAVALRRLI 442
           FFA  L R  
Sbjct: 462 FFAARLTRQA 471


>gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032]
 gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
           turicensis z3032]
          Length = 425

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 209/453 (46%), Gaps = 44/453 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  V+ K  SL+ +L           +S +D+ L++ +    LR L + +
Sbjct: 1   MNLRSLAAQAIEQVVEKGQSLSTVLP-----PLQHKVSDKDKALLQELCFGVLRTLSQQE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  + F  L+
Sbjct: 56  WLINKLMSRPMTGKQRTIHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRMQ-FKGLI 114

Query: 125 NSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYIDL 180
           N +LR+  R++ E            + P W  +RL+  + +E    +       P+++ +
Sbjct: 115 NGVLRQFQRQQDELLAEFAGQDARWLHPMWLLKRLQTAWPQEWQAVVQANNERPPMWLRV 174

Query: 181 T-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233
                  + W   L    +                P  + +LPGF +G   VQDASA   
Sbjct: 175 NRQHHSRDEWLTLLEENGMTGHIHPRYPDAVRLEAPAPVSALPGFEQGWVTVQDASAQGC 234

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAE 291
           V+L    N  ++LDLCAAPGGKT  ++ +  +  V A+DV  +R+ ++  NL R+ + AE
Sbjct: 235 VELLAPQNGETILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRISRVYENLKRVKMRAE 294

Query: 292 DIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +   D      +C    FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q  +L
Sbjct: 295 -VKVGDGRFPATWCGDMQFDRILLDAPCSATGVIRRHPDIKWLRRDSDISELAQLQSDIL 353

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG ++++ CS+  +++ E ++  L  +P             +      A +
Sbjct: 354 DAIWPHLKPGGTLLYATCSILPEENSEQIRAFLTRTPDA-----------QLDGTGSAQT 402

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           P   I+  P   E         DGFF   L + 
Sbjct: 403 P--GIQNLPGATEG--------DGFFYAKLIKK 425


>gi|146313354|ref|YP_001178428.1| 16S rRNA methyltransferase B [Enterobacter sp. 638]
 gi|224493252|sp|A4WF97|RSMB_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|145320230|gb|ABP62377.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter sp. 638]
          Length = 428

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 209/456 (45%), Gaps = 45/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKK-QNLRSMAASAIEKVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+ + ++  ++   +  K+ ++  L+ V   Q+L+  +  +A +   VE A   K  +  
Sbjct: 55  PQQEWLISKLMSRPMTGKQRTIHYLIMVGFYQLLHTRIPPHAALAETVEGAVVIKRPQ-L 113

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +LR+  R++ ELL   A      + PEW  +RL+  Y  K   +  ++    P+
Sbjct: 114 KGLINGVLRQFQRQQEELLAEFADSDKRFLHPEWLLKRLQKAYPSKWEAIVEANNQRPPM 173

Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGF +G   VQDAS
Sbjct: 174 WLRVNRNHHTRDEWLALLETAEMNGFTHDAYPDAIRLASPAPVQALPGFEQGWVTVQDAS 233

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   +      N   +LDLCAAPGGKT     I   A V A+DV ++RL ++  NL RL 
Sbjct: 234 AQGCMTYLEPQNGDHILDLCAAPGGKTTHILEIAPKASVMAVDVDEQRLSRVYDNLKRLG 293

Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE + + D     ++C  + FD +LVDAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 294 MKAE-VKQGDGRTPGEWCGDEQFDRILVDAPCSATGVIRRHPDIKWLRRDRDINELAQLQ 352

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG +V++ CS+  +++ + +   L+ +                    
Sbjct: 353 SEILDAVWPHLKPGGTLVYATCSVLPEENSQQIAAFLKRTSNATLRTTGTPDKP------ 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   ++  P         +   DGFF   L +
Sbjct: 407 -------GVQNLPG--------AEDGDGFFYAKLIK 427


>gi|182679035|ref|YP_001833181.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634918|gb|ACB95692.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 463

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 166/439 (37%), Positives = 249/439 (56%), Gaps = 7/439 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +G+  R  ++ +L  ++ K  +L      E        L  RD+ L R+IV V LR L  
Sbjct: 29  AGLGVRRTAAAILRAIVTKGQALDDFFAPESNPEILAGLEPRDKALARSIVTVALRRLGT 88

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           I A L  +L   LPR+   L+ +L V+ AQIL+LDV D+A VDLAV   + D ++  FA 
Sbjct: 89  IRAALTGLLAQGLPRQAPDLEWILLVAGAQILFLDVPDHAAVDLAVRATRLDPKSTPFAP 148

Query: 123 LVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           LVN++LR ++R + ++  +  A     P W  +R    YG+E   AI+ A      +D+T
Sbjct: 149 LVNAVLRNLARGREKILAESDALAMDTPAWLAKRWRETYGEELARAIALAHREEPTLDVT 208

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           V  + + WA KL A +LPTG +RL+     I  LPGFAEGVW+VQDA+A++P +L     
Sbjct: 209 VLAEPDLWAEKLGARLLPTGSLRLETHA-PIADLPGFAEGVWFVQDAAAALPARLMPAGP 267

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            L + D CAAPGGK AQL  +GA VTA+D S  RL++L  N  RLHL AE +        
Sbjct: 268 GLRIADFCAAPGGKAAQLAATGAHVTAIDRSATRLKRLSANFARLHLEAEVL--AADVLT 325

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FD +L+DAPCS+TGTIRRHPD+ W +   DI+  A  Q ++L +  + +K GG +
Sbjct: 326 FEAEPFDGILLDAPCSATGTIRRHPDIAWIKQPKDILALALAQARMLDKAATLLKAGGTL 385

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           ++  CSL+ ++ EE ++  L++ P      P++    +  +++  ++  G +RI P   +
Sbjct: 386 IYCTCSLEPEEGEERIEAFLQNHP-EFRRRPISP--GEVGNLSEIINQNGDLRILPAHFQ 442

Query: 422 KIDGVSSGMDGFFAVALRR 440
             +   SG+DGFF   L R
Sbjct: 443 GTEARFSGLDGFFVSRLVR 461


>gi|85703964|ref|ZP_01035067.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. 217]
 gi|85671284|gb|EAQ26142.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. 217]
          Length = 422

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 153/439 (34%), Positives = 229/439 (52%), Gaps = 19/439 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K  + AR  + HLL  V+ +      L+       A   LS  D+   + +   TLR L 
Sbjct: 3   KPTLTARSAAVHLLDRVLGEGR----LMSELIAGGALDALSPPDRARAQRLATDTLRGLD 58

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R D +L   L  + P     +Q +LR++  ++       + VV+ AVE   +   +    
Sbjct: 59  RADLLLSRHLRKAPP---LPVQNVLRLATVELAQGG-ESHGVVNEAVETIGQSPRHAKLK 114

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LR+++ E       +  +  +P W +  L + +GK  V A+  A  +   +D+T
Sbjct: 115 GLVNAVLRKMTEEAPRSWNDL-RLPNLPTWLRAPLVDAWGKGPVAAMERAHFAGAPLDIT 173

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D E WA +L A +LPTG +R +  P  + +LPG+A G WWVQD +A++PV +     
Sbjct: 174 VKSDPEVWAERLGATLLPTGSLR-RTDPGQVSALPGYANGEWWVQDVAAALPVAVLAPKP 232

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              +LDLCAAPGGKT Q+  +GAKVTALD+S+RR+ ++  NLDR  L A  I   DA D+
Sbjct: 233 GEQILDLCAAPGGKTLQMAAAGAKVTALDLSERRMARVTENLDRTGLTATCI-VGDALDH 291

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                +DA+L+DAPCS+TGTIRRHPD+   +D  D       Q  +L   ++ +KP G +
Sbjct: 292 H-GGPYDAILLDAPCSATGTIRRHPDLPHAKDGSDFGALIALQAAMLDHALTLLKPEGRL 350

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VF  CSL   + E  V++ L   P    L    +   +       ++ EG +R+ PD   
Sbjct: 351 VFCTCSLLPDEGECQVEEALGRHPD---LTVDRTTLLRPGIEPGWVTEEGGLRLRPDYWA 407

Query: 422 KIDGVSSGMDGFFAVALRR 440
            +     GMDGFF   LRR
Sbjct: 408 DL----GGMDGFFIACLRR 422


>gi|229822831|ref|ZP_04448901.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271]
 gi|229787644|gb|EEP23758.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271]
          Length = 457

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/462 (22%), Positives = 195/462 (42%), Gaps = 43/462 (9%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N R  +  LL  +         LL+     S    L   DQ L+  +V  +++    +
Sbjct: 12  KHNVRFQALQLLVEIDWHDQYSNVLLNRALSQS---ELKPVDQGLLVNLVYGSIQHRLTL 68

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
           D  L+  +     + +  ++ LLR++  Q+LYL  + D+A ++ AV  AK    +   A 
Sbjct: 69  DFYLEPFIKG--KKLEPWIRSLLRMTAYQMLYLERIPDHAAINEAVNIAK-LNGHAGLAG 125

Query: 123 LVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           LVN +LR   R++        + ++ ++    +  W    L+  Y +  +  +  +    
Sbjct: 126 LVNGVLRNFRRQELRSLDSVTDPIEALSIQYSVAPWIVALLQKQYDQASLADLLASLNQR 185

Query: 176 LYIDLTVKFD---IETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQD 227
             +   ++      +    +L A              ++ L   I+  P F  G   +QD
Sbjct: 186 PRLTARIQAHPNERDQILAQLRAAGYQVEAGNLSPYAIESLDGRIIESPAFQAGRLTIQD 245

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDR 285
            S+ +   +   +    +LD C+APGGK   +        + ALD+S+ +L+ +  +++R
Sbjct: 246 ESSMLVAPIGRPVAGQRLLDACSAPGGKATHMAFLLQNGHLDALDISQAKLDLVAGHMER 305

Query: 286 LHLY-------AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           L L        +    +   F      L+D + +DAPCS  G +RR P++ +T+   DI 
Sbjct: 306 LGLSQQEGLTISLHATDALDFMPPSGTLYDIIYLDAPCSGLGLMRRKPEIKYTKQASDIE 365

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             +  Q +LL    S +KPGG +V+S C+L + ++++ V+  L       +L P+     
Sbjct: 366 ALSMLQSQLLDHVASLLKPGGTLVYSTCTLAQAENQDQVKAFLAR-QSDFQLSPIGPEEV 424

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +    A  L+ +G I + P             DGFF   + +
Sbjct: 425 QG---ASVLTADGMIEVLPQDYL--------TDGFFIARMTK 455


>gi|293391667|ref|ZP_06636001.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952201|gb|EFE02320.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 451

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 123/456 (26%), Positives = 210/456 (46%), Gaps = 36/456 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            + ++AR  +  +L  V+ +  SL+ LL       A  ++  +D  L++ I     R LP
Sbjct: 12  TTALSARTAAVQILFQVLEQGKSLSSLLP-----DAQVVIKAQDLPLLQEICFGVCRVLP 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R++ ++  ++   L  KK  +  LL V + QILY  +  YA VD  V  AK  +  + F 
Sbjct: 67  RLEQIIAQLVDKPLRGKKRIVHCLLLVGLYQILYTRIPVYAAVDEIVNTAKNLQL-QSFQ 125

Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN++LRR  RE+  +         ++ P+W   +L+  Y   R +  ++    P+++ 
Sbjct: 126 GLVNAVLRRFLREQESMLAKVDKHWQTLHPDWLVNKLKKVYPNWREIIEANNQKPPMWLR 185

Query: 180 LTVK-FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIP 233
           +  +   +ET+   L A  +        +        S+  LP FAEG   VQD  A   
Sbjct: 186 VNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQDLHAQWA 245

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
             L    N   +LD CAAPGGKT  ++     A+V ALDV + RL++++ NL R+   A 
Sbjct: 246 ALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLARMQQQAT 305

Query: 292 DIIEMDAFDYCPKKL-------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +    A               FD +L+DAPCS+TG +RRHPD+ W R   DI      Q
Sbjct: 306 IVCGDAANPRAWLTKLGKSAVRFDRILLDAPCSATGVVRRHPDIKWLRKEADIEPLVELQ 365

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L     ++KP G+++++ CS+  +++   +++ L+ +P     V        + + +
Sbjct: 366 EQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQRTPDAQLAVLNLPEEVLARNQS 425

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +  P         + G DGF+   L +
Sbjct: 426 AV-----GFQFIPQ--------TDGGDGFYYAKLVK 448


>gi|78042686|ref|YP_360313.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994801|gb|ABB13700.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 440

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 195/460 (42%), Gaps = 44/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +    L  V +    +  LL     + A +     D+  V  +    L+ L  +D
Sbjct: 1   MNLRELVIKTLVEVEKNNSYVNLLLPKLIANLAKKE----DKDFVVELTYGVLKQLKLLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +   +L     +    +   +RV + Q+ +LD V  YA ++  VE  KR+   R F  +
Sbjct: 57  YMAGKLLKKR-SKLPPFVINAIRVGLYQLYFLDKVPTYAAINETVEAVKRNY--RGFTGV 113

Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           VN +LR   R + E+ +         +A     PEW  +R  N YG  + + I       
Sbjct: 114 VNGVLRNFIRRREEITKIDVSDEVEYLAIAYSHPEWMVKRWLNQYGYTKTVEILKYNNHQ 173

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQ 226
             + L +       + +   LN   +    +       +      +  LPG+ EG++++Q
Sbjct: 174 PNLTLRINTLKISPKAYCDLLNEKNINFKQLPYLPEGVVILDKVGVKELPGYDEGLFYIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D  +     L     N   +D CAAPGGK+  L   + +   + A DV   RL+ +  N 
Sbjct: 234 DTGSMFIAYLINPEPNSVGIDACAAPGGKSTHLAQLMGNKGIIYAFDVHPGRLKLIEENA 293

Query: 284 DRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL +     +  DA           + +L D PCS TG + R PD  W +  ++I+K +
Sbjct: 294 HRLGINIIRCLLGDATRLKLPDGVNPNWILADVPCSGTGVLARKPDARWQKSEEEIIKLS 353

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
            +Q ++L      + P GI+V+S CS++ +++E VV+  LR +P  V + P    +   I
Sbjct: 354 QYQLEILTNLSKLLPPEGILVYSTCSIEPEENEGVVENFLRKNPNFVLVKPPEWFFNLGI 413

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                     ++R+ P  +          DGFF V L++L
Sbjct: 414 VKN-----NYYLRLLPGEI---------GDGFFGVILKKL 439


>gi|307264803|ref|ZP_07546365.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920061|gb|EFN50273.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 444

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 111/461 (24%), Positives = 199/461 (43%), Gaps = 42/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R ++  +L  V+ K        +        + L + D+   + +V   +     +D
Sbjct: 1   MKPREIAYKILQEVLSKEAYANISFNKHLRS---QELKEIDRGFTKELVFGVIERKYTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L F +  +   K       L + + Q+LY+D V  YA ++  V  AK+    +  A  
Sbjct: 58  FILSFFVKKAPDLKTMIF---LEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKR-ANF 113

Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174
           +N++LR   REK +++                  P+W  ERL N Y +E+  A+  +   
Sbjct: 114 INAVLRNYEREKEKVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226
              I   V     DIE     L++  +           L    ++      + EG+ ++Q
Sbjct: 174 RPEICYRVNTLKIDIEDLKRLLDSDGIVYKKGYYLEEALYIDIKNPERHQLYKEGLIYIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +  +        +VLD+CAAPGGKT  +   + +  +V A D+   RLE ++ N 
Sbjct: 234 DEASMLVSKTLNPKEGDTVLDVCAAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKENC 293

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340
            RL +        D+     K     D VL D PC+  G IR+ PD+        +I + 
Sbjct: 294 KRLGITNVKTEVFDSTFVNEKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISEL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q K+L     +VK GG +V+S C++ K++++ V+ K L+  P   +LV + +     
Sbjct: 354 IEAQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHP-DFKLVDIKAEMPSG 412

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +++     G+++ITP        +   +DGFF   L+R+
Sbjct: 413 --LSIETDSLGYVQITP--------LEHEIDGFFISKLKRI 443


>gi|332533679|ref|ZP_08409538.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036843|gb|EGI73304.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 431

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 206/457 (45%), Gaps = 41/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  N R +++  L  V+ K  SL   L       A + L  +D+ L++ I    LR+L
Sbjct: 1   MSNVPNVRALAAETLYNVVDKGASLNQELPF-----ASQGLPPKDKALLQQICYGVLRYL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P ++     ++   L  K+   Q LL V + Q+ ++ V  +A +   V  A         
Sbjct: 56  PSLENYCQHLVEQPLKGKRRIFQFLLYVGIYQLQHMRVPPHAAISETVN-ALAQLRALGL 114

Query: 121 AKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISP 175
             L+N+ILR   R++     +       +   P WF ++++  Y      L   +   +P
Sbjct: 115 KGLINAILRSFQRQQAELEEKAKLIPVCLYNHPNWFIKQVQTAYPDSWEALLEENQQQAP 174

Query: 176 LYIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           +++ +   +F  + ++  L+A  +                P  + SLP F  G   VQDA
Sbjct: 175 MWLRVNQAQFSTQEYSDMLSANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQDA 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287
           +A +  +      +  +LD CAAPGGKT  ++  + A V ALD    RLE+++ NL R+ 
Sbjct: 235 AAQLAARFLEPKADDYILDACAAPGGKTCHILELADADVLALDSDSTRLERVKQNLTRIG 294

Query: 288 LYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L A+           +  +KLFD +L+D PCS+TG IRRHPD+ W R   DI   A  Q 
Sbjct: 295 LGADLQCGDASQPHTWWDEKLFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLAKLQS 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      +KPGG +V++ CS+  Q++++ V K L ++   VE +PL+     +     
Sbjct: 355 DILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANN-DDVEHIPLHENDTVTTP--- 410

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                  +++ P             DGF+   L +  
Sbjct: 411 ------GLQLLPGE----------SDGFYYAKLVKKA 431


>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 444

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 199/461 (43%), Gaps = 42/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R ++  +L  V+ K        +        + L + D+   + +V   +     +D
Sbjct: 1   MKPREIAYKILQEVLSKEAYANISFNKHLK---GQELKEIDRGFTKELVFGVIERKYTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L F +  +   K       L + + Q+LY+D V  YA ++  V  AK+    +  A  
Sbjct: 58  FILSFFVKKAPDLKTMIF---LEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKR-ANF 113

Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174
           +N++LR   REK  ++                  P+W  ERL N Y +E+  A+  +   
Sbjct: 114 INAVLRNYDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226
              I   V     DIE     L++  +           L    ++  S   + EG  ++Q
Sbjct: 174 RPEICYRVNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIYIKNPESHQLYKEGFIYIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +  ++       +V+D+CAAPGGKT  +   + +  KV A D+   RLE ++ N 
Sbjct: 234 DEASMLVSKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENC 293

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340
            RL +        D+     K     D VL D PC+  G IR+ PD+        +I + 
Sbjct: 294 KRLGITNVKTEAFDSTFVNKKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISEL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q K+L     +VK GG +V+S C++ K++++ V+ K L+  P   +LV + +     
Sbjct: 354 IETQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHP-DFKLVDIKAEMPSG 412

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +++  A    G+++ TP        +   +DGFF   LRR+
Sbjct: 413 LNIETA--SLGYVQTTP--------LEHEIDGFFISKLRRI 443


>gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 442

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 113/460 (24%), Positives = 187/460 (40%), Gaps = 44/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++   L  + +       ++       A   LS RD+     +V  TLR++  +D
Sbjct: 1   MNIRELAVRSLLLIWQDGGYSNIVVSRMIKKYA---LSDRDRRFYTELVYGTLRYMAMLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             +  +   SL +       +LR+ + Q+ YLD V   A    AV  A++   +   AK 
Sbjct: 58  RAIGMLSKRSLQQMDAVCAAILRLGLYQLQYLDKVPPSAACYEAVALARKM-GHEGMAKF 116

Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN++LR   R     +           +A       WF  R    YG E  + +     +
Sbjct: 117 VNAVLRNALRRPEVFVVPSRQEDEVLHLALTYHQQNWFIRRCLQQYGFEETVKLCRFFDT 176

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWV 225
              + + ++      E     L    + T   R        E  +++ +L   A G   +
Sbjct: 177 IPELCVRIQTQKISREKAMAMLAEKGIVTRPGRYAPESLYIETNDAVQNLELLAAGRAMI 236

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG---AKVTALDVSKRRLEKLRCN 282
           QD ++ +   +        VLD+CAAPGGKT  +   G     V   D+ + +L+ +R N
Sbjct: 237 QDEASQLVAHVLDPQPGDVVLDVCAAPGGKTTHIASLGGSDCLVYGADIYEHKLQLIREN 296

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            ++LHL     I  DA     +     D VLVDAPCS  G +RR  D+ W +   D+++ 
Sbjct: 297 AEKLHLTNIRTILQDAVRIGERFPAKADRVLVDAPCSGLGILRRKLDLRWRKKEQDLMRL 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L    + VKPGGI+V+S C+++  ++  VV+  L+       L    +  W  
Sbjct: 357 PSLQTRILNGAAACVKPGGILVYSTCTINTAENAAVVEAFLQRHTEFTLLRAGETCSWPQ 416

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           P     +     G+DGFF   +RR
Sbjct: 417 ----------------PGKYIDVLPQRDGIDGFFIAKMRR 440


>gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336]
 gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336]
          Length = 462

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 203/463 (43%), Gaps = 54/463 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R++++ ++  V+ +  SL+ LL           +  +D  L++ I     R LPR++ +
Sbjct: 24  VRVLAAEVILQVLVQGKSLSTLLPE-----QQSAVKPQDFPLLQEICFGICRVLPRLERI 78

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  +L   L  K   +  LL V + QILY  +  +A VD  V  A +  ++  F  L+N+
Sbjct: 79  IQLLLDKPLKGKTRIVHCLLLVGLYQILYTRIPAHAAVDEVVS-ATKSLKSDSFRGLLNA 137

Query: 127 ILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           +LRR  RE+ ++  +      ++ PEW   +L+  Y   R +  ++    P+++ + ++ 
Sbjct: 138 VLRRFLREQEQILAIVDKHWQTLHPEWLVNKLKQSYANWREIVEANNQKPPMWLRINLQH 197

Query: 185 -DIETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             I  +   L    + T               ++  LP F +G   VQD  A     L  
Sbjct: 198 CSIADYQQLLMERGISTSTTNHPQALRLHHASAVNLLPYFEQGWVSVQDLHAQWSALLLE 257

Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
             N+  +LD CAAPGGKT         AKV ALD+   RL++++ NL R+   A  I   
Sbjct: 258 PENDELILDACAAPGGKTTHILEQAPNAKVIALDIEPARLQRVKENLVRMKQQAIII-CG 316

Query: 297 DAFDYCPK------------------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           DA                          FD +L+DAPCS+TG IRRHPD+ W R   DI 
Sbjct: 317 DATQPEQWLSEIDFNAIGLTFKSESAVQFDRILLDAPCSATGVIRRHPDIKWLRQESDIT 376

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q ++L      +KP GI+V++ CSL  +++ + +Q  L       +L PL     
Sbjct: 377 PLVQLQGQILEALWKKLKPQGILVYATCSLLPEENSQQIQHFLAKH-NDAKLEPLPFTIG 435

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + I      + +G                   DGF+   LR+L
Sbjct: 436 EEIGHQFVPTEQGG------------------DGFYYAKLRKL 460


>gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
           5369-93]
 gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
           5369-93]
          Length = 426

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++  L  V+    SL+  L      +A + +  RD  L++ I    LR LPR++
Sbjct: 1   MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   ++   L  K+     L+ V + Q+ ++ +  +A V   VE A+  K  R    L+
Sbjct: 56  SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++     +     AG    P W  + L+  Y ++    +      +P+++ 
Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174

Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +         +   L    +              E P  +  LPGFAEG   VQDA+A +
Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            +          +LD CAAPGGKTA        ++V A+D  + RL+++R NL RL L A
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS+TG IRRHPD+ W R  DDI   A  QR++L
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG ++++ CS+  Q++   V+  L  +P    LV  + A            
Sbjct: 355 DAMWQQLKPGGSLLYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424


>gi|84684376|ref|ZP_01012277.1| ribosomal RNA small subunit methyltransferase B, putative
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667355|gb|EAQ13824.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2654]
          Length = 420

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 152/434 (35%), Positives = 222/434 (51%), Gaps = 22/434 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  L+  VM     L  +L           L+  D+   + +V    R + R D V
Sbjct: 8   PRRVALDLMGDVMEHGRLLPEVLPRRLEK-----LAPEDRARTQRLVATAFRVMDRADRV 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   L          +  +LR+SVA+I  L  A + VV+ AVE A+ DK+    A LVN+
Sbjct: 63  LGPHLRKRPT---LRIHNILRLSVAEICELGAAPHGVVNTAVELARADKKTAGMAGLVNA 119

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           ILR+V       L        +P+W ++ L + YGK+ V A+  A  +   +DLT K D 
Sbjct: 120 ILRKVDPAGWAALPT----PRLPKWLRKPLTDDYGKDIVAAMETAFYAGAPLDLTPKGDA 175

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           ET A  L   +LPTG +R+      + +LPGFAEG WWVQDA+A++P ++       +VL
Sbjct: 176 ETLAQALGGTVLPTGSVRVT-GAGQVSTLPGFAEGDWWVQDAAAALPARVLNAQPGEAVL 234

Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           DLCAAPGGKT QL  +GA+VTA+D+S+ R+ ++  NL R  L A+ +             
Sbjct: 235 DLCAAPGGKTMQLAAAGAEVTAVDISEHRMARVGENLARCGLSADLV--TMDALEYEGGP 292

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FDA+L+DAPC++TGTIRRHPD+ + +D  D       Q  L+ + +  +KPGG +V+  C
Sbjct: 293 FDAILLDAPCTATGTIRRHPDLPYAKDGSDFPGLFELQEHLIDRALGMLKPGGRLVYCTC 352

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL   + EE V+  L        L    +A  +        + EG +R+ PD        
Sbjct: 353 SLLIDEGEEQVRDALGRHEG---LSVDTAALDRPGIDPDWRTDEGGLRLRPDYWAD---- 405

Query: 427 SSGMDGFFAVALRR 440
             GMDGF+   L +
Sbjct: 406 KGGMDGFYIACLVK 419


>gi|77359003|ref|YP_338578.1| 16S rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76873914|emb|CAI85135.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 431

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 209/457 (45%), Gaps = 41/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  N R +++  L  V+ K  SL   L       A + L  +D+ L++ I    LR+L
Sbjct: 1   MSNVPNVRALAAETLYNVVDKGASLNQELPF-----ASQGLPPKDKALLQQICYGVLRYL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P ++     ++   L  K+   Q LL V + Q+ ++ V  +A +   V  A +       
Sbjct: 56  PSLENYCQHLVEEPLKGKRRIFQFLLYVGIYQLQHMRVPPHAAISETVN-ALQQLRALGL 114

Query: 121 AKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS-P 175
             L+N+ILR   R++     +       +   P WF ++++  Y       +++     P
Sbjct: 115 KGLINAILRSFQRQQLELEEKAKLIPVCLYNHPNWFIKQVKEAYPDSWEDLLAENQQQAP 174

Query: 176 LYIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           +++ +   ++  + ++  L A  +                P  + SLP F  G   VQDA
Sbjct: 175 MWLRVNQAQYSTQEYSDMLTANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQDA 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287
           +A +  +     ++ ++LD CAAPGGKT  ++  + A+V ALD    RLE+++ NL R+ 
Sbjct: 235 AAQLAARFLEPKDDDTILDACAAPGGKTCHILELADAEVLALDSDATRLERVKQNLTRIG 294

Query: 288 LYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L A+           +  +K FD +L+D PCS+TG IRRHPD+ W R   DI   A  Q 
Sbjct: 295 LGADLQCGDASQPHTWWDEKQFDRILLDVPCSATGVIRRHPDIKWLRRASDIADLAALQG 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      +KPGG +V++ CS+  Q++++ V K L ++   VE +PL+     +     
Sbjct: 355 DILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANN-NDVEHIPLHDKDTPTTP--- 410

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                  +++ P             DGF+   L + I
Sbjct: 411 ------GLQLLPGE----------SDGFYYAKLVKKI 431


>gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 420

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 114/446 (25%), Positives = 204/446 (45%), Gaps = 44/446 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L +++ +++ +
Sbjct: 2   AAQAVEQVIEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTLSQLEWLINKL 56

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +   +  K+ ++  L+ V   Q+L+  +  +A +   VE A   K  +    L+N +LR+
Sbjct: 57  MSRPMSGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVSIKRPQ-LKGLINGVLRQ 115

Query: 131 VSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPLYIDLTV-KFD 185
             R++ ELL   A      + PEW   RL+  Y ++       +    P+++ +      
Sbjct: 116 FQRQQDELLAEFAQSEARFLHPEWLLNRLKKAYPQQWQDIADANNQRPPMWLRVNRNHHT 175

Query: 186 IETWAHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQDASASIPVQLFGT 239
            + W   L    +                   + +LPGF EG   VQDASA   +     
Sbjct: 176 RDAWLALLEEAGMSGFTHAAYPDAVRLASPALVHALPGFEEGWLTVQDASAQGCMTWLEP 235

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
            +   +LDLCAAPGGKT  ++    +  V A+DV ++RL ++  NL RL + A  + + D
Sbjct: 236 KDGEQILDLCAAPGGKTTHILEVAPQASVMAVDVDEQRLSRVYDNLKRLGMKA-QVKQGD 294

Query: 298 ---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                D+C    FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L      
Sbjct: 295 GRKPADWCGDTRFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPH 354

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +KPGG +V++ CS+  +++ + +   L+ +P                 +    +PE    
Sbjct: 355 LKPGGTLVYATCSVLPEENSQQIAAFLKRTPDA--------------TLHDTGTPE---- 396

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +    +   DGFF   L +
Sbjct: 397 ---HPGLQNLPGAEEGDGFFYAKLIK 419


>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 444

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 110/461 (23%), Positives = 198/461 (42%), Gaps = 42/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R ++  +L  V+ K        +        + L + D+   + +V   +     +D
Sbjct: 1   MKPREIAYKILQEVLSKEAYANISFNKHLRS---QELKEIDRGFTKELVFGVIERKYTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L F +  +   K       L + + Q+LY+D V  YA ++  V  AK+    +  A  
Sbjct: 58  FILSFFVKKAPDLKTMIF---LEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKR-ANF 113

Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174
           +N++LR   REK +++                  P+W  ERL N Y +E+  A+  +   
Sbjct: 114 INAVLRNYEREKEKVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226
              I   V     DIE     L++  +           L    ++      + EG+ ++Q
Sbjct: 174 RPEICYRVNTLKIDIEDLKRLLDSDGIVYKKGYYLEEALYIDIKNPERHQLYKEGLIYIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +  +        +VLD+CAAPGGKT  +   + +  +V A D+   RLE ++ N 
Sbjct: 234 DEASMLVSKTLNPKEGDTVLDVCAAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKENC 293

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340
            RL +        D+     K     D VL D PC+  G IR+ PD+        +I + 
Sbjct: 294 KRLGITNVKTEVFDSTFVNEKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISEL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q K+L     +VK GG +V+S C++ K++++ V+ K L+  P   +LV + +     
Sbjct: 354 IEAQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHP-DFKLVDIKAEMPSG 412

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +++     G+++ TP        +   +DGFF   L+R+
Sbjct: 413 --LSIETDSLGYVQTTP--------LEHEIDGFFISKLKRI 443


>gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
           CIP 102891]
 gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
           CIP 102891]
          Length = 426

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 198/452 (43%), Gaps = 44/452 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGQSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++ + L  KK     L+ V + Q+ ++ +  +A V   VE  K  K       L+
Sbjct: 56  SIANELMENPLKGKKRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKTLKGP-SLRGLI 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179
           N++LR   R++ EL +      AG    P W    L   Y       I      +P+++ 
Sbjct: 115 NAVLRSYLRDQEELDEKAVSHNAGKYGHPNWLLNMLRESYPDSWEQLIEANNSKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +                P  +  LPGF  G   VQDA+A +
Sbjct: 175 VNRQHHTRDEYLELLKDENIEFSIHPEAADAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V      N   +LD CAAPGGKTA         +V A+D   +RL+++  NL+RL L A
Sbjct: 235 SVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLERLQLRA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q +++
Sbjct: 295 DVICGDARYPQEWWTGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIM 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++   V+  L  +     LV  +              
Sbjct: 355 DAMWGQLKVGGTMVYATCSITPQENVLQVKAFLERT-DNATLVGSDINNP---------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +I P            MDGF+   L +
Sbjct: 404 ---GRQILPG--------EEDMDGFYYAVLIK 424


>gi|113460188|ref|YP_718245.1| ribosomal RNA small subunit methyltransferase B [Haemophilus somnus
           129PT]
 gi|112822231|gb|ABI24320.1| 16S rRNA m(5)C-967 methyltransferase [Haemophilus somnus 129PT]
          Length = 462

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 203/463 (43%), Gaps = 54/463 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R++++ ++  V+ +  SL+ LL           +  +D  L++ I     R LPR++ +
Sbjct: 24  VRVLAAEVILQVLVQGKSLSTLLPE-----QQSAVKPQDFPLLQEICFGICRVLPRLERI 78

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  +L   L  K   +  LL V + QILY  +  +A VD  V  A +  ++  F  L+N+
Sbjct: 79  IQLLLDKPLKGKTRIVHCLLLVGLYQILYTRIPAHAAVDEVVS-ATKSLKSDSFRGLLNA 137

Query: 127 ILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           +LRR  RE+ ++  +      ++ PEW   +L+  Y   R +  ++    P+++ + ++ 
Sbjct: 138 VLRRFLREQEQILAIVDKHWQTLHPEWLVNKLKQSYANWREIVEANNQKPPMWLRINLQH 197

Query: 185 -DIETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             I  +   L    + T               ++  LP F +G   VQD  A     L  
Sbjct: 198 CSIADYQQLLMERGISTSTTNHPQALRLHQASAVNLLPYFEQGWVSVQDLHAQWSALLLE 257

Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
             NN  +LD CAAPGGKT         AKV ALD+   RL++++ NL R+   A  I   
Sbjct: 258 PENNELILDACAAPGGKTTHILEQAPNAKVIALDIEPARLQRVKENLVRMKQQAIII-CG 316

Query: 297 DAFDYCPK------------------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           DA                          FD +L+DAPCS+TG IRRHPD+ W R   DI 
Sbjct: 317 DATQPEQWLSEIDFNAIGLTFKSESAVQFDRILLDAPCSATGVIRRHPDIKWLRQESDIT 376

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q ++L      +KP GI+V++ CSL  +++ + +Q  L       +L PL     
Sbjct: 377 PLVQLQGQILEALWKKLKPQGILVYATCSLLPEENSQQIQHFLTKH-NDAKLEPLPFTIG 435

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + I      + +G                   DGF+   LR+L
Sbjct: 436 EEIGHQFVPTEQGG------------------DGFYYAKLRKL 460


>gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110]
          Length = 443

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 34/457 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR ++   L  V          L+  +  +A   L   D+     IV  TLR   +ID
Sbjct: 2   MKAREIAVQALREVEVNHAKSDTALNHFFSITA---LEPVDRAFTMQIVYGTLREKMKID 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            V+         +    ++ +LR+   Q+L+L  V  +A V+ +VE AK+ K  +    L
Sbjct: 59  HVIKQFYRHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLKG-QFLGNL 117

Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR +S     +           +IA     P W  ER  + YG      I +A   
Sbjct: 118 VNGVLRNISNNLESVDFSIQGGTFADQIALKYSHPRWLLERWISTYGFLEAQNIMEANNL 177

Query: 175 PLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAE-GVWWVQDA 228
              I   +       E +  KL A  +      L +   P+    L  F   G   VQ  
Sbjct: 178 IPRIAFRINRLKNAPEKFQQKLLAENVTFRKSILPDFVIPDRFFDLEPFLSTGEVSVQSE 237

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           + ++  +L        VLD+CAAPGGK+     ++ +  ++T+LD+   +LE +      
Sbjct: 238 AQALACRLLNPQPGQKVLDMCAAPGGKSTYLAEMMANAGQITSLDLYDNKLEDIDRLASA 297

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L +     I+ DA  +  ++ FDA+L+DAPC+ TG + R  ++ W     D+   +  Q 
Sbjct: 298 LGIDIISTIKHDATRFSHEEGFDAILLDAPCTGTGVLSRRAELRWRLSEADLAALSNLQY 357

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           +LL       KP   +V+S CS++ ++++ +++K L + P       +        +   
Sbjct: 358 QLLENAAKMAKPDAAIVYSTCSIEPEENQVLIEKFLNAHPEWQLQSAI---EILPDEFHE 414

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            +  +G+I + P          +G DG F+  L R  
Sbjct: 415 VVHDKGYISLLPG--------KNGFDGAFSARLVRKA 443


>gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC 49946]
 gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC 49946]
          Length = 429

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 218/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L      +A + +  +D  LV+ +    LR L
Sbjct: 1   MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKCVDDKDAALVQELCYGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ V+  ++   +  K+ ++  L+ V + Q+++  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWVISKLMSRPMTGKQRAIHFLIMVGLYQLMFTRIPPHAALAETVEGAVALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRI---AGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +LR+  R++ +L+Q++       + P+W  ERL+  +  + + +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQDQLMQQMNDGDQQYLHPKWLLERLKRAWPEQWQQIVAANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L           L         P ++  LPGF +G   VQDAS
Sbjct: 175 WLRVNRQYHSRDAWLALLEESGKQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++ +  +  V A+DV  +RL ++  NL RL+
Sbjct: 235 AQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLN 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE +   D      +C   LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MQAE-VKLGDGRTPAAWCGDTLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L      +K GG ++++ CS+  +++   + + L+       +   +          
Sbjct: 354 QQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHANAALVATGDLTQP------ 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I++ P +         G DGF+   L +
Sbjct: 408 -------GIQVLPQV--------DGGDGFYYAKLVK 428


>gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus 16]
 gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus 16]
          Length = 426

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 200/454 (44%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGQSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++ + L  KK     L+ V + Q+ ++ +  +A V   VE  K  K       L+
Sbjct: 56  SIANELMDNPLKGKKRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKTLKGP-SLRGLI 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R++  L +      AG    P W    L   Y  +   L  ++   +P+++ 
Sbjct: 115 NAVLRSYLRDQEALDEKAVSHNAGKYGHPNWLLNMLRESYPEQWEQLVEANNSKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +        E       P  +  LPGF  G   VQDA+A +
Sbjct: 175 VNRQHHTRDEYLELLKDANIEFSIHPEAEDAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V      N   +LD CAAPGGKTA         +V A+D   +RL+++  NL+RL L A
Sbjct: 235 SVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLERLQLRA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++   + FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q +++
Sbjct: 295 DVICGDARYPQEWWSGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIM 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  +++   V+  L  +                  +  +  
Sbjct: 355 DAMWGQLKAGGTMVYATCSITPKENVLQVKSFLERTSDA--------------TLVGSDI 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +I P            MDGF+   L +  
Sbjct: 401 NNPGRQILPG--------EEDMDGFYYAVLVKQA 426


>gi|225377868|ref|ZP_03755089.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
           16841]
 gi|225210306|gb|EEG92660.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
           16841]
          Length = 440

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 106/471 (22%), Positives = 200/471 (42%), Gaps = 60/471 (12%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R +   +L  V ++      ++        ++ L ++++  +  +   T++++
Sbjct: 1   MTDSVNTRELILGILMEVTKEGSYSHLVIRSVL--DKYQYLEKKERAFITRVSEGTIQYM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +++      + + K  ++ +LR+SV Q+ Y+D V D AV + AV+ AKR K    
Sbjct: 59  IELDYIINRFSKVKVNKMKPVIRNILRMSVYQLKYMDSVPDSAVCNEAVKLAKR-KGFGS 117

Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
            +  VN +LR              + + +Q ++    +PEW  ++  N YG ER +++  
Sbjct: 118 LSGFVNGVLRNISRNLSSITYPDGQKDQIQYLSVHYSMPEWIVKQWINDYGMERTVSVLQ 177

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTG-----------GIRLKELPESIVSLP 216
           A +    + +         E    +L    + T               +    + + +L 
Sbjct: 178 AFLQEAPVTIRTNLLKITPEALEMRLKEEGVTTEKIVCADMPELNYAFMISGFDHLNALE 237

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSK 273
            F EG+++VQD S+ +  +    + +  ++D+CAAPGGK+  L         V A D++ 
Sbjct: 238 SFREGLFYVQDVSSMMVAETVDPVKDSYIMDVCAAPGGKSVHLAEKLGGTGMVEARDLTD 297

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWT 331
            + + +R N+ R  L     ++MDA           D V+ D PCS  G +RR  D+ + 
Sbjct: 298 YKTDLIRQNIARHQLSNMRAVQMDATVLDEASIGKADVVIADLPCSGLGVMRRKTDIKYK 357

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                  +    QRK+L     +VK GG +++S C++DK ++E+ V   L+  P   ELV
Sbjct: 358 MTLQTEQELVSLQRKMLETVCQYVKAGGTLLYSTCTMDKMENEDNVTWFLKQHP-QFELV 416

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                                 +I P             DGFF   L++  
Sbjct: 417 -------------------KMQQIFPQKTYG--------DGFFLAKLQKKA 440


>gi|323705503|ref|ZP_08117078.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535405|gb|EGB25181.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 447

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 196/460 (42%), Gaps = 39/460 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  +  +L  ++ K+     +L+    ++  R +   D+  ++ IV  T+     +D
Sbjct: 1   MNQRNTAFKILYDIIIKKGYSNIVLNKYLNNNELRDI---DKSFIKEIVFGTIERKQTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D        +    +  +L + + QI+Y+D V  YA +  AV  AK      H +K 
Sbjct: 58  QIIDHCSSKGSKKIDNKILIILEMGLYQIIYMDKVPQYAAISEAVNLAKEYAG-IHASKF 116

Query: 124 VNSILRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN++LR  +R             +++ +A     PEW  +RL N Y K     I  +   
Sbjct: 117 VNAVLRNYARNSAKIDILRSDKNVVEYLAFKYSYPEWIVKRLLNNYDKAATEDILKSLNE 176

Query: 175 PLYIDLTVKF------DIETWA--HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
              I + +        D E       LN               ++I     +  G   +Q
Sbjct: 177 KPQISIRLNTLKIGSKDFEKILIDKGLNFKKGSYVDDAYYIDLKNIAGDEIYKNGFMQIQ 236

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D  A I  ++     +  ++D+C+APGGKT  +   + +  KV A D+ + +++ +R N 
Sbjct: 237 DEGAMIISKVLSPNPDDLIIDVCSAPGGKTTHISQLMNNKGKVIAFDIHEHKIDLIRMNC 296

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340
            RL +   D    D+     K     D VL D PC+  G IR+ PD+       +DI K 
Sbjct: 297 KRLGVNNVDAYVFDSTKINEKYIEKADKVLADVPCTGIGIIRKKPDIKLKNYTDEDIKKL 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L     +VK GG +++S C++ ++++  ++ + L  +    E+  +       
Sbjct: 357 NNIQYNILSSSSKYVKKGGYILYSTCTIGREENMNIIDRFLGENKN-FEISDIRPLLPDK 415

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +A  +  +G++++ P++        +  DGFF   L+R
Sbjct: 416 --LASQVDNKGYLQLLPNI--------NNTDGFFICKLKR 445


>gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01]
 gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01]
          Length = 426

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGHSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++ +SL  KK     L+ V + Q+ ++ +  +A V   VE A +       + L+
Sbjct: 56  SIANELMENSLKGKKRVFHHLILVGIYQLSFMRIPSHAAVAETVE-ATKTLRGPSLSGLI 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R++ EL +      AG    P W  + L+  Y  +   L  ++   +P+++ 
Sbjct: 115 NAVLRSYLRDQEELDEKAVSHNAGKYSHPSWILKMLQESYPDQWEQLVEANNNKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +                P  +  LPGF  G   VQDA+A +
Sbjct: 175 VNRQHHTRDEYVELLKNENIEYTLHPEAADAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V      +   +LD CAAPGGKTA         +V A+D   +RL+++  NL+RL L A
Sbjct: 235 SVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLERLQLRA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++     FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q ++L
Sbjct: 295 DVICGDARYPEEWWTGSQFDRILLDAPCSATGVIRRHPDIKWLRRASDIDALAELQSEIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++   V+  L  +              ++  +  +  
Sbjct: 355 DAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERT--------------ENATLVGSDI 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            +   +I P            MDGF+   L +  
Sbjct: 401 EKPGRQILPG--------EEDMDGFYYAVLVKQA 426


>gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731]
 gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731]
          Length = 446

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 105/465 (22%), Positives = 187/465 (40%), Gaps = 46/465 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK +  N R  +  +L  +  +       LD          LS  D+ L   +V  T++ 
Sbjct: 1   MKGTAKNPREAALLILEQIFLRGAYANLALDQGLR---GATLSPLDRKLTTELVYGTVKT 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
           +  +D  L  V+   L +    +  +LR+   Q+LYLD +   A  + +V+ AK+   + 
Sbjct: 58  MGTLDWYLSRVVNRPLRKLDPLVLVILRLGAYQLLYLDRIPASAACNESVKLAKKWV-HE 116

Query: 119 HFAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAIS 169
              KLVN  LR+++R + +              A     PEW   R +  YG E  + + 
Sbjct: 117 GAGKLVNGALRQLARTRDQWKFPQGPDHELERIALEYYHPEWLVRRWKFRYGLEEAVKLC 176

Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAE 220
               +       V       E    KL            +    L +   S+  L     
Sbjct: 177 AFDNARPAFSFRVNTLRDTREGLQEKLAEKGIRTRPSQWSPDGLLCDSLPSLDDLVEGFG 236

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
              ++QD S+ +   +        VLDLC+APGGKT      +    ++ ALD+   +L+
Sbjct: 237 PDIYIQDESSMLDAAVLDPQPGERVLDLCSAPGGKTTHLAQKMQDQGEILALDLYDHKLD 296

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            +R N  RL ++     + D   + P  +     VLVDAPCS  G + R  +  WT++  
Sbjct: 297 LVRENARRLGIHCIRTEKQDGTVFVPEWENTAHRVLVDAPCSGLGVLNRRAEARWTKEER 356

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            + +    Q+K+L  G  +V PGG +++S C+L++ ++  V +  L + P        + 
Sbjct: 357 SLSQFPPLQKKILANGARYVMPGGRLLYSTCTLEQDENTRVRKWFLENHPEFAPAAFPHP 416

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + ++          ++I P           G++GF+     +
Sbjct: 417 LTGEPVEE---------LQILPQ--------RDGINGFYLCLFEK 444


>gi|307296989|ref|ZP_07576805.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1]
 gi|306877515|gb|EFN08743.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1]
          Length = 429

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 152/443 (34%), Positives = 217/443 (48%), Gaps = 27/443 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR  +  LL  V+R+   L   L       A + L   D+ LV AI   TLR LP 
Sbjct: 11  PGLPARRAALRLLDAVLRRGDPLELAL-----HGAGQGLPPADRALVHAIAAETLRHLPD 65

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DA++D      LP      + +LR+++ Q + L  A +A +  A+     D   R    
Sbjct: 66  LDALIDSATRQPLP-HDAKARMVLRIALIQTIALGTAPHAAIATALPLV--DGGPRKLVH 122

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            V   L R +            +         R  + +G    LA + A      +DL++
Sbjct: 123 GVFGTLTRANPTLPSPPTLPPEV-------AARWGSQWGAAMPLAAATAYALRPPVDLSL 175

Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +   ET  WA +L       G IRL E   +I  LPGF EG WWVQD +AS+P +L G  
Sbjct: 176 RDASETAHWAEQLGGRSFAPGHIRLPEGA-NIPDLPGFGEGAWWVQDIAASVPARLLGAG 234

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLCAAPGGKT QL  +G +VTA+D SK+RLE+L  NL R  L AE + + D   
Sbjct: 235 EGRRVLDLCAAPGGKTMQLAAAGWRVTAVDQSKKRLERLGENLGRTGLSAEVV-QADLRA 293

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P    DA+L+DAPC++TG  RRHPDVL       I + A  Q +LL +   ++ PGG 
Sbjct: 294 WAPDGPADAILLDAPCTATGIYRRHPDVLHRIGPRQIAELAELQAELLDRAAQWLTPGGT 353

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           ++++ CSL++ + EE V + L + P    L     A    +   +A + +GW+R  P+ L
Sbjct: 354 LIYATCSLEQAEGEEQVARFLSAHPDFAPL----PANAAELPEGIAPTAQGWVRTLPETL 409

Query: 421 EKIDGVSSGMDGFFAVALRRLIQ 443
                   G DGFF   L R  +
Sbjct: 410 AN----EGGTDGFFVARLVRSTK 428


>gi|119471679|ref|ZP_01614064.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Alteromonadales
           bacterium TW-7]
 gi|119445458|gb|EAW26745.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Alteromonadales
           bacterium TW-7]
          Length = 431

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 117/457 (25%), Positives = 204/457 (44%), Gaps = 41/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R +++  L  V+ K  SL   L       A + L  +D+ L++ I    LR+L
Sbjct: 1   MNKVQNVRALAAETLYNVVDKGASLNQELPF-----ASQGLPPKDKALLQQICYGVLRYL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P ++     ++ S L  K+   Q LL V + Q+ ++ V  +A +   V  A         
Sbjct: 56  PSLENYCQHLVESPLKGKRRIFQFLLYVGIYQLQHMRVPPHAAISETVN-ALGQMRALGL 114

Query: 121 AKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISP 175
             L+N+ILR   R++     +       +   P WF ++++  Y      +   +   +P
Sbjct: 115 KGLINAILRSFQRQQAELEEKAKLIPVCLYNHPNWFIKQVKEAYPENWEAILEENQQQAP 174

Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           +++ +   +F  + ++  L A  +                P  + SLP F  G   VQDA
Sbjct: 175 MWLRVNQSQFSTQEYSDMLTANDIEHTLNPNFIDGIKLAKPRDVFSLPEFDTGACSVQDA 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287
           +A +  +     ++  +LD CAAPGGKT  ++  + A V ALD    RLE+++ NL R+ 
Sbjct: 235 AAQLAARFLEPKDDDVILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLTRIG 294

Query: 288 LYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L A+           +   + FD +L+D PCS+TG IRRHPD+ W R   DI   A  Q 
Sbjct: 295 LGADLQCGDASQPHTWWDDEQFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLAALQG 354

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      +KPGG +V++ CS+  +++++ + K L ++   VE +PL+     +     
Sbjct: 355 DILNSIWPLLKPGGTLVYATCSVLPKENQQQIAKFLANN-DDVEHIPLHDKDTLTTP--- 410

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                  +++ P             DGF+   + +  
Sbjct: 411 ------GLQLLPGE----------SDGFYYAKMVKKA 431


>gi|258511305|ref|YP_003184739.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478031|gb|ACV58350.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 451

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 125/460 (27%), Positives = 202/460 (43%), Gaps = 40/460 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L  V R    L   L       A   + +RD+ L   I   TLR    +D +L
Sbjct: 6   RRRAYQALIRVERDGAFLNAALQEAL---AGAGVDERDRALATEIAYGTLRRQITLDRLL 62

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
             ++   + +    ++ +LR+   Q+ +L  V  YA  + AVE AKR +     A LVN+
Sbjct: 63  SPLVRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRHR--PQAAALVNA 120

Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +LRR +    +                R + +  +P W  ERL   +G +RVLA   +  
Sbjct: 121 VLRRYAERAQDWEDLLNKAVAGAKDVERWSVMYSVPAWIVERLVADHGADRVLAALASMN 180

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWW 224
            P  + L         E    +L A         L       +    +  L  + +G   
Sbjct: 181 EPAPMSLRANRLRGSREEAIARLGAEGAVARPAALAEDGLRVQGQVDVTRLQAYRDGYVT 240

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD  A +   L      + V+DLCAAPGGKT  L   +    ++ A DV+  ++  +R 
Sbjct: 241 IQDEGAMLVAPLLRPEPGMRVVDLCAAPGGKTTHLAELMGDRGEIDAYDVTVAKVRAIRQ 300

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
             +RL L +      D     P+ L+DA LVDAPC+  G +RR PD+ + R  +D+ + A
Sbjct: 301 QAERLGLQSVHPRLGDGRQVTPEGLYDAALVDAPCTGLGVMRRRPDLRYRRRPEDVAQLA 360

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR LL +  + V+ GG VV+S C+L K+++E VV+ V     + V +  +      ++
Sbjct: 361 QLQRALLRRACAIVRSGGCVVYSTCTLLKEENESVVRDVASDPSVGVRIEDIGGDLAPTL 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +++     G++ + PD            DGFF   LRR+
Sbjct: 421 AVSVGERSPGFL-LWPDW--------HETDGFFMARLRRI 451


>gi|83594989|ref|YP_428741.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC
           11170]
 gi|83577903|gb|ABC24454.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC
           11170]
          Length = 438

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 144/439 (32%), Positives = 219/439 (49%), Gaps = 18/439 (4%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             LLS V+     L  + D          L  RD+   R +   TLR + R++ V+   L
Sbjct: 13  LDLLSAVLDHGRPLDDVFDAATRK-----LEPRDRAFARLLAATTLRRMGRLEKVIKTFL 67

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
              LPR+    + +LR+  AQ+L+LD   +A V  +V+ A R +    +A L+N++LR+V
Sbjct: 68  DRPLPRRAVGAKHILRLGAAQMLFLDTPPHAAVATSVDVA-RVRRLAPYAGLINAVLRKV 126

Query: 132 SREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
           +             ++ +P W  +     YG E    +++AC     +DLT +       
Sbjct: 127 ADHGAARLAGFDDPLADLPRWLGQSWIAAYGAETAARLAEACGREAPLDLTPRDGDGGAL 186

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF-GTLNNLSVLDLC 249
            +L   +   GG        ++  L GF EG WWVQDA+A++PV L    L    V+D C
Sbjct: 187 AELVGGLALPGGSVRLPTATAVRELAGFTEGQWWVQDAAAALPVLLAGVPLKGARVVDFC 246

Query: 250 AAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMD--AFDYCPKKL 306
           AAPGGKT QL  +GA+V A+D S  RL +LR NL+R  L  A +++E D   F     + 
Sbjct: 247 AAPGGKTLQLAAAGAQVWAVDRSATRLARLRENLERTGLGDAVNVVEGDALTFTLTDGQQ 306

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            D VLVDAPC++TGT RRHPD  W +   D    A  Q  LL   +  V+PGG++V+  C
Sbjct: 307 ADVVLVDAPCTATGTFRRHPDAPWLKRPGDAAALAALQDSLLDAAVRLVRPGGVIVYCVC 366

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL  +++   ++ +L  SP  +   P+ +      D    ++ EG +R+ P  L+ +   
Sbjct: 367 SLQPEEAAPRIEALLARSP-EISRKPITAGEGGVSD--EMITAEGDVRLFPFHLDAV--- 420

Query: 427 SSGMDGFFAVALRRLIQPK 445
             G+DGFF   L R   P+
Sbjct: 421 -GGLDGFFIARLVRGDAPR 438


>gi|197302406|ref|ZP_03167462.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC
           29176]
 gi|197298527|gb|EDY33071.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC
           29176]
          Length = 458

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 111/468 (23%), Positives = 194/468 (41%), Gaps = 42/468 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R +   +L  +         +L      S ++ L ++++  +  +   TL  L
Sbjct: 1   MGRQVNEREIVLAVLMEITENGAYSHKILGEVL--SKYQYLEKKERAFITRVTEGTLEHL 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +LD      + + K  ++ +LR  V Q+ Y+D V D+AV   AV+ A R K    
Sbjct: 59  IEIDYILDQFSKVKVKKMKPVIRNILRSGVYQLKYMDSVPDHAVCSEAVKLAVR-KGFSG 117

Query: 120 FAKLVNSILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACI 173
               VN +LR V+R    L          +    IP W     E  YG+E    ++   +
Sbjct: 118 LKGYVNGVLRSVARGLDTLDYPQEGIEALSIQYSIPTWILRLWEKSYGEEVTRTMAADFL 177

Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWW 224
               + +    +    E    +L    +                 + + SL  F +G + 
Sbjct: 178 KERPVTIRCCQNKVTPEQLKKELEQEGVTVQEHPYLPYAFFISGYDYLESLDCFWKGWFT 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVSKR 274
           VQD S+ +  +L        ++D+CAAPGGK+  +               +V A D+++ 
Sbjct: 238 VQDVSSMLVAELAAPEAGNKIVDICAAPGGKSLHIAEKLWITDRNEAKKGEVEARDLTEY 297

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           ++  +  N+ R+ L     +  DA       K+  D VL D PCS  G   + PD+ +  
Sbjct: 298 KVGLIEENIARMELENIHAVCRDATVPDEAWKEKADIVLADLPCSGLGVFGKKPDLKYRV 357

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +D+ + A  QRK+L    + VK GG +++S C++D  ++EE V   L+  P    L  
Sbjct: 358 KEEDLKELAGLQRKILENAQAMVKKGGTLLYSTCTIDPMENEENVHWFLKKYP-QFSLNS 416

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +         +A ++  EG I++ P +           DGFF   L++
Sbjct: 417 IREKLCPQ--LAESVEEEGCIQLLPGI--------HCSDGFFIARLKK 454


>gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 451

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 125/456 (27%), Positives = 211/456 (46%), Gaps = 36/456 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            + ++AR  +  +L  V+ +  SL+ LL       A  ++  +D  L++ I     R LP
Sbjct: 12  TTALSARTAAVQILFQVLEQGKSLSSLLP-----DAQVVIKAQDLPLLQEICFGVCRVLP 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R++ ++  ++   L  KK  +  LL V + QILY  +  YA VD  V  AK  +  + F 
Sbjct: 67  RLEQIIAQLVDKPLRGKKRIVHCLLLVGLYQILYTRIPVYAAVDEIVNTAKNLQL-QSFQ 125

Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN++LRR  RE+  +         ++ P+W   +L+  Y   R +  ++    P+++ 
Sbjct: 126 GLVNAVLRRFLREQESMLAKVDKHWQTLHPDWLVNKLKKVYPNWREIIEANNQKPPMWLR 185

Query: 180 LTVK-FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIP 233
           +  +   +ET+   L A  +        +        S+  LP FAEG   VQD  A   
Sbjct: 186 VNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQDLHAQWA 245

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
             L    N   +LD CAAPGGKT  ++     A+V ALDV + RL++++ NL R+   A 
Sbjct: 246 ALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLARMQQQAT 305

Query: 292 DIIEMDAFDYCPKKL-------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +    A               FD +L+DAPCS+TG IRRHPD+ W R   DI      Q
Sbjct: 306 IVCGDAANPRAWLTKLGKSAVRFDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQ 365

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L     ++KP G+++++ CS+  +++   +++ L+ +P         +       +A
Sbjct: 366 EQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPDAQ----PTALNLPEEVLA 421

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              S  G+         +    + G DGF+   L +
Sbjct: 422 RNQSAVGF---------QFIPQTDGGDGFYYAKLVK 448


>gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
           8]
 gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
           8]
          Length = 429

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 198/455 (43%), Gaps = 50/455 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  LL+ +         LLD     S F    +RD+  + A+    L     +DA
Sbjct: 3   NTRRFTVKLLTRLDENSSYSNILLDEALARSDF---DKRDKKFISALFYGVLERRLTLDA 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++  +  +   +   +L+ +LR  + Q+ Y+D V D A VD +VE AK+   N   A  V
Sbjct: 60  MIAELSKNPKNKLNNTLRNILRSGLYQLKYMDSVPDNAAVDESVEMAKK-LRNPASAGFV 118

Query: 125 NSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N +LR      +   +    + R++     PEW   +    YGKE+ L++ ++ I     
Sbjct: 119 NGLLREFIRRDKALPKSDTEIGRLSLEYSCPEWLVGKWLAEYGKEKCLSLLESSIGRAPA 178

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDAS 229
            + +      +E     L A  +      + +         ++     + EG + VQD +
Sbjct: 179 TVRINHLIGSVEETLDMLAAEGVTFERSSISDYTVHLANAGAVEKTKAYREGRFHVQDIA 238

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +  +        +VLDLCAAPGGKT     ++ +  +V A D+   R++ ++   DRL
Sbjct: 239 SQLCCKALDPQAGDTVLDLCAAPGGKTFTIAEMMGNEGRVLAFDLHPNRVKLIKSGADRL 298

Query: 287 HLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            L        +A  +  K    D VLVDAPCS  G IRR P++ + +D  D  +    Q 
Sbjct: 299 GLSCVTAEVNNAKVFNDKLPPADRVLVDAPCSGLGVIRRKPEIKY-KDPADFERLPAVQY 357

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L     +VK GG++V+S C++ + ++++VV+K L +                  D   
Sbjct: 358 EILDTASKYVKAGGLMVYSTCTVSRAENDDVVKKFLAAHEDF---------EPDGEDFMQ 408

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++PE +                G DGFF   LRR
Sbjct: 409 TITPEMY----------------GSDGFFTARLRR 427


>gi|238926271|ref|ZP_04658031.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
           ATCC 43531]
 gi|238885951|gb|EEQ49589.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
           ATCC 43531]
          Length = 449

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 106/455 (23%), Positives = 189/455 (41%), Gaps = 42/455 (9%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L  +  +       L  E        +++RD+  +  +V  T++    +D ++
Sbjct: 14  REQAMQVLLRIHSEGAYANVALAEELR---IAQMTERDRRFLTELVYGTVKAGETLDYMI 70

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +   L + +  +++LLR+   QI ++D +   AV   AVE AK+    +  A  VN 
Sbjct: 71  RRYVA-DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKH-GGKGAASFVNG 128

Query: 127 I-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +        +R +  +    + +A     P W  ER    YG ER   +         + 
Sbjct: 129 VLRTALREPKRAALPQGHDARSLALRMQHPVWMVERWLRDYGSERTETLCRCDNESAPLT 188

Query: 180 LT---VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASA 230
           L    ++        +L A  +            L     ++ +L    EG+  VQD S+
Sbjct: 189 LRTNTLRTSRTALIERLTAAGVRAEASLRVPESVLLHAHGALDALAPLREGLAQVQDESS 248

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   + G    ++V+D CAAPGGKT      + +  ++ A D+ + +L ++  N +RL 
Sbjct: 249 MLVAHVLGAEPGMTVIDACAAPGGKTTHIAQRMENRGRIWAFDIHEEKLRRIMRNAERLG 308

Query: 288 LYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +   +   +DA +         D VLVDAPCS  G +RR PD  W +   D+      Q 
Sbjct: 309 ISIIETQLLDAREVGAHYGVCADRVLVDAPCSGLGVLRRKPDARWRKTPSDVKTLPPLQL 368

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      VK GG++V+S C++++ ++  VV+  LR     V              +  
Sbjct: 369 AILASAARTVKQGGVLVYSTCTMERSENTAVVEAFLRGHEDFV-------LEETGAFLPE 421

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + E  ++I P         + G DGFF   +RR
Sbjct: 422 QKTAERMVQIMP--------ETGGPDGFFIARMRR 448


>gi|332998302|gb|EGK17903.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           VA-6]
          Length = 420

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 46/448 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L ++D +++ +
Sbjct: 2   AAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKL 56

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +    L+N +LR+
Sbjct: 57  MARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKGLINGVLRQ 115

Query: 131 VSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KF 184
             R + E            + P W  +RL+  Y  E+  +I++A      + L +     
Sbjct: 116 FQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPPMWLRINRTHH 174

Query: 185 DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             ++W   L+   +                P  + +LPGF +G   VQDASA   +    
Sbjct: 175 SRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLA 234

Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
             N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL + A  + + 
Sbjct: 235 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKAT-VKQG 293

Query: 297 DAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L     
Sbjct: 294 DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWP 353

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K GG +V++ CS+  +++   ++  L+ +                 ++    +PE   
Sbjct: 354 HLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCETGTPE--- 396

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  ++    +   DGFF   L + 
Sbjct: 397 ----QPGKQNQPGAEEGDGFFYAKLIKK 420


>gi|320530184|ref|ZP_08031254.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
           artemidis F0399]
 gi|320137617|gb|EFW29529.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
           artemidis F0399]
          Length = 451

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 189/458 (41%), Gaps = 41/458 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L  V R        L           L+ RD+  +  +V  T++    +D 
Sbjct: 13  PVRELAMQVLMEVHRDGAYANVALVRAMRA---AQLTDRDRRFLTELVYGTVKAGDTLDD 69

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   L     R K  ++++LR+ + QI ++D V   A  + AVE AK+    R     V
Sbjct: 70  MIAKYLRDGKARIKPQIREILRLGIYQIFFMDKVPASAACNTAVELAKKH-GKRGADSFV 128

Query: 125 NSI-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N++         R +       + +A     P W   R    YG ER   +         
Sbjct: 129 NAVLRAAVREPERAAIPAGRNARLLALREQHPFWMANRWVRLYGYERAEELCRCNNGSAP 188

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDA 228
           + L V     D E    KL A               +      + +L    EG+  VQD 
Sbjct: 189 LALRVNTLRIDREGLLKKLAAAGAQARPSATVPDGIVVTSHGMLDALAPLREGLCQVQDE 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +   + G    ++V+D CAAPGGKT      + +  K+ A DV + ++ ++  N  R
Sbjct: 249 SSMLVAHVLGAAPGMTVIDACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENNARR 308

Query: 286 LHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +   +   +DA +         D VL+DAPCS  G +RR PD  W R  +++      
Sbjct: 309 LGIDIIEPRLLDAREIGAHYAGTADRVLIDAPCSGFGVLRRKPDARWRRKPEELGALPKL 368

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+++L    + V+PGG +V+S C+++  ++E VVQ+ L   P  V              +
Sbjct: 369 QQEILAGAAAAVRPGGALVYSTCTMETAENEGVVQRFLELHPEFV-------LERAGAFL 421

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  + +  ++I P           G DGFF   ++RL
Sbjct: 422 PVQQTEDAMVQIFP--------TEDGGDGFFIARMKRL 451


>gi|78484536|ref|YP_390461.1| sun protein [Thiomicrospira crunogena XCL-2]
 gi|78362822|gb|ABB40787.1| Ribosomal RNA small subunit methyltransferase B [Thiomicrospira
           crunogena XCL-2]
          Length = 436

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 210/455 (46%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +N+R ++  +   V+    SL+  L       +     +R++   + +V  TLR+  R++
Sbjct: 3   VNSRYIALKICLTVIEHGRSLSQSLAEGLAQFS----DRRERAFTQNLVLGTLRWQERLE 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L   L  K   + QL+ + + QILY+D  ++A V   V   K  K+      L+
Sbjct: 59  AIRSHLLKKPLKAKDEDVNQLILLGLYQILYMDTPEHAAVSETVNLTKSLKKP-WARGLI 117

Query: 125 NSILRRVSREKIELL----QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N +LR   R+K  +     ++ A     P+WF + + N Y  +    I  A   P  + L
Sbjct: 118 NGVLRTFLRDKDSICEEVDKKPAYRYSHPQWFTKTIRNAYP-DHWEQILSANNEPAPLTL 176

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231
            V       E +   L+   +            + +    I  LP + EG + VQDA+A 
Sbjct: 177 RVNPLYQTREAFLALLSDQAVEADIHPKAPQGIVLKNSLDITQLPTYDEGGFSVQDAAAQ 236

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
               L     N  +LD CAAPGGKT  L     + AKV AL+    R+E+L  NL RL L
Sbjct: 237 QAAYLLAPQPNEFILDACAAPGGKTTHLLELSDNQAKVFALEKEPERIERLSENLYRLAL 296

Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            AE I   D      + P+  FD +L+DAPCS+TG IRRHPD+ W R  +DI      Q 
Sbjct: 297 TAE-IEVGDASQPDQWWPEIQFDKILLDAPCSATGIIRRHPDIKWHRTPEDITVLTQLQA 355

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      +KPGG ++++ CS+  Q++ + + + L+ +P   E +P+ + +  +ID   
Sbjct: 356 AILQAIWPRLKPGGKLLYATCSVLPQENRDQISQFLQQTPDAKE-IPIGADWGITIDAP- 413

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   +I P           GMDGF+   + +
Sbjct: 414 ------GRQILPG--------QDGMDGFYYCLIEK 434


>gi|332754010|gb|EGJ84383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
           2747-71]
          Length = 420

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 46/448 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L ++D +++ +
Sbjct: 2   AAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKL 56

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +    L+N +LR+
Sbjct: 57  MARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKGLINGVLRQ 115

Query: 131 VSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KF 184
             R + E            + P W  +RL+  Y  E+  +I++A      + L +     
Sbjct: 116 FQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPPMWLRINRTHH 174

Query: 185 DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             ++W   L+   +                P  + +LPGF +G   VQDASA   +    
Sbjct: 175 SRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLA 234

Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
             N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL + A  + + 
Sbjct: 235 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKRLGMKAT-VKQG 293

Query: 297 DAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L     
Sbjct: 294 DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWP 353

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K GG +V++ CS+  +++   ++  L+ +                 ++    +PE   
Sbjct: 354 HLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCETGTPE--- 396

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  ++    +   DGFF   L + 
Sbjct: 397 ----QPGKQNQPGAEEGDGFFYAKLIKK 420


>gi|163734256|ref|ZP_02141696.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149]
 gi|161392264|gb|EDQ16593.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149]
          Length = 423

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 138/441 (31%), Positives = 212/441 (48%), Gaps = 21/441 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +G+ AR  + +LL  ++ +      L+           L   D+     +   TLR 
Sbjct: 1   MADTGLPARRSAVYLLDQILGEGR----LMSELLTAGTLDKLEPEDRARAARLAQDTLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L R D +L   L    P    +++  LRV   ++     A + VV+  VE   R K   H
Sbjct: 57  LERADRILQKHLSKYPP---LTVRNALRVGAFELC-TGTAAHGVVNAMVELVSRHKHYSH 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              L N++LR+V+ +       +     +P+W +  L   +G + +  +  A  +   +D
Sbjct: 113 LKGLTNAVLRKVAADGPTAWDAL-RPPRLPKWLRGPLVEAWGADAMARMDIAHFAGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LT K D    A      +LPTG +R+      + ++PGF++G WWVQDA+A++PV++   
Sbjct: 172 LTAKSDAPAVAALTGGTLLPTGSVRIANA-GQVSAMPGFSDGTWWVQDAAAALPVRILAP 230

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
               +VLDLCAAPGGKT QL  +GA VTA+D S  R+ ++  NL R  L A+ +++    
Sbjct: 231 QPGETVLDLCAAPGGKTMQLAAAGAMVTAVDDSSVRMGRVEENLARTGLKAKTLVQDAQI 290

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPCS+TGTIRRHPD+   +D  +       Q  L+      VKPGG
Sbjct: 291 TT---GTFDAVLLDAPCSATGTIRRHPDLPHAKDGSEFGDLIAMQADLIDHAWGCVKPGG 347

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +VF  CSL   + E  +   L            ++     +D A   + EG +R+ PD 
Sbjct: 348 RLVFCTCSLLPDEGEVQIDDALERHADM--RTDADALEIPGVDPAWR-TSEGGLRLRPDY 404

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
              +     GMDGF+   LR+
Sbjct: 405 WSDL----GGMDGFYIAVLRK 421


>gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602]
 gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602]
          Length = 429

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 134/457 (29%), Positives = 218/457 (47%), Gaps = 46/457 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ K +SL+ +L         + +S++D+ L++ +   TLR L
Sbjct: 1   MKTAYNLRSIAAQAISQVLDKGLSLSTVLPGL-----QKNVSEKDRGLLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  L  ++   L  K+ +L  LL V + Q+++  +  +AV+   V+ A   K  +  
Sbjct: 56  PQLEWCLQQLMAKPLTGKQRTLHYLLMVGLYQLIHTRIPAHAVLAETVDGAVALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ ELLQR+A      + P W   RL+  Y  +   +I DA      
Sbjct: 115 KGLINGVLRQFQRQQEELLQRMANNDSRHLHPSWLLNRLKKAYPTDW-ESIVDANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDA 228
           + L V       + + H LN V +                P  +  LPGF EG   VQDA
Sbjct: 174 MWLRVNRQHHTRDEYLHLLNEVHIEAVPHPEYRDALRLNTPCQVNLLPGFTEGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   V L    N   +LDLC APGGKT  ++     A V A+DV ++RL+++  NL RL
Sbjct: 234 SAQGSVDLLDPQNGELILDLCCAPGGKTTHILEAAPKAHVLAVDVDEQRLKRVHENLQRL 293

Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L AE + + D      +   ++FD +L+DAPCS+TG IRRHPD+ W R   DIV+ A  
Sbjct: 294 KLSAE-VKQGDGREPQMWAGDRIFDRILLDAPCSATGVIRRHPDIKWLRRDSDIVELASL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+++L      +K  GI+V++ CS+   ++ + +   L S      +             
Sbjct: 353 QKEILDAVWPRLKSKGIMVYATCSILPDENCQQIASFLESHQDATLVE------------ 400

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +   +  P             DGF+   L +
Sbjct: 401 -TGTMEKPGRQNLPH--------PEDGDGFYYAKLVK 428


>gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222]
 gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
           LGP32]
 gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222]
 gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
           LGP32]
          Length = 426

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 44/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLFQVVDKGHSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++ + ++ +SL  KK     L+ V + Q+ ++ +  +A V   VE A +       + L+
Sbjct: 56  SIANELMENSLKGKKRVFHHLILVGIYQLSFMRIPSHAAVAETVE-ATKTLRGPSLSGLI 114

Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R++ EL +      AG    P W  + L+  Y  +   L  ++   +P+++ 
Sbjct: 115 NAVLRSYLRDQEELDEKAVSHNAGKYSHPSWILKMLQESYPDQWEQLVEANNSKAPMWLR 174

Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +       + +   L    +                P  +  LPGF  G   VQDA+A +
Sbjct: 175 VNRQHHTRDEYVELLKNENIEYTLHPEAADAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            V      +   +LD CAAPGGKTA         +V A+D   +RL+++  NL+RL L A
Sbjct: 235 SVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLERLQLRA 294

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                      ++     FD +L+DAPCS+TG IRRHPD+ W R   DI   A  Q ++L
Sbjct: 295 DVICGDARYPEEWWTGSQFDRILLDAPCSATGVIRRHPDIKWLRRASDIDALAELQSEIL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  Q++   V+  L  +              ++  +  +  
Sbjct: 355 DAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERT--------------ENATLVGSDI 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            +   +I P            MDGF+   L +  
Sbjct: 401 EKPGRQILPG--------EEDMDGFYYAVLVKQA 426


>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 444

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 194/461 (42%), Gaps = 42/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R ++  +L  V+ K        +        + L + D+   + +V   +     +D
Sbjct: 1   MKPREIAYKILQEVLSKEAYANITFNKYLK---GQELKEIDRGFTKELVFGVIERKYTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L F +      K       L + + Q+LY+D V  YA ++  V  AK     +  A  
Sbjct: 58  FILSFFVKKPADEKSKIF---LEMGLYQLLYMDKVPSYAAINETVNIAKNVLGIKR-ANF 113

Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174
           +N++LR   REK +++                  P+W  ERL N Y +E+  A+  +   
Sbjct: 114 INAVLRSYEREKEKVIFPDKERDLRKYLMVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226
              I   V     DIE     L +  +           L    ++  S   + EG+ ++Q
Sbjct: 174 KPKICYRVNTLKIDIEDLKKLLVSRGIVYKKGYYLEEALYIDIKNPESHQLYKEGLIYIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +  ++       +VLD+CAAPGGKT  +   + +   V A D+   RLE ++ N 
Sbjct: 234 DEASMLVSKILNPNEGETVLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENC 293

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340
            RL +        D+     K     D VL D PC+  G IR+ PD+        +I + 
Sbjct: 294 KRLGITNVKAEAFDSTFVNDKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTKSEISQL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q K+L     +VK  G +V+S C++  +++  V+ K L+  P    LV + +     
Sbjct: 354 VETQYKILDSSSKYVKKDGFLVYSTCTIGVEENHNVIMKFLKEHPN-FRLVDIKAEMPSG 412

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +++  A    G+I+ TP        +  G+DGFF   L+R+
Sbjct: 413 LNIETA--SLGYIQTTP--------LEHGIDGFFISKLKRI 443


>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
 gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
 gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
 gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
 gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
 gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
          Length = 444

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 199/461 (43%), Gaps = 42/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R ++  +L  V+ K        +        + L + D+   + +V   +     +D
Sbjct: 1   MKPREIAYKILQEVLSKEAYANISFNKHLK---GQELKEIDRGFTKELVFGVIERKYTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L F +  +   K       L + + Q+LY+D V  YA ++  V  AK+    +  A  
Sbjct: 58  FILSFFVNKAPDLKTMIF---LEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKR-ANF 113

Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174
           +N++LR   REK  ++                  P+W  ERL N Y +E+  A+  +   
Sbjct: 114 INAVLRNYDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226
              I   V     DIE     L++  +           L    ++  S   + EG  ++Q
Sbjct: 174 RPEICYRVNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIDIKNPESHQLYKEGFIYIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +  ++       +V+D+CAAPGGKT  +   + +  KV A D+   RLE ++ N 
Sbjct: 234 DEASMLVSKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENC 293

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340
            RL +        D+     K     D VL D PC+  G IR+ PD+        +I + 
Sbjct: 294 KRLGITNVKTEAFDSTFVNKKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISEL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q K+L     +VK GG +V+S C++ K++++ V+ K L+  P   +LV + +     
Sbjct: 354 IETQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHP-DFKLVDIKAEMPSG 412

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +++  A    G+++ TP        +   +DGFF   LRR+
Sbjct: 413 LNIETA--SLGYVQTTP--------LEHEIDGFFISKLRRI 443


>gi|313905220|ref|ZP_07838588.1| sun protein [Eubacterium cellulosolvens 6]
 gi|313469973|gb|EFR65307.1| sun protein [Eubacterium cellulosolvens 6]
          Length = 437

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/463 (24%), Positives = 204/463 (44%), Gaps = 52/463 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R ++   L  + ++      L+        +  L  RD+     +   TL + 
Sbjct: 1   MTDRVNVRELAVETLLAIQKENRQSHLLIRDVL--DQYAWLPDRDRAFYVRLTEGTLEYR 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D +++    +   R K  ++++LRV+V Q+ Y+D V D A V+ AV  A R +    
Sbjct: 59  LQLDYIINSYSKTRTTRMKPMIREILRVAVYQLRYMDSVPDSAAVNEAVRLAVR-RGFSG 117

Query: 120 FAKLVNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDA 171
               VN +LR ++RE  ++           +  +  +P +  ++  + YG +R   I  A
Sbjct: 118 LKGFVNGVLRSIAREPEKVKFPERSSGTSYLEVVYSMPVYLGQKWIDAYGMDRAEQICRA 177

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWV 225
            +   +I + V+ D E    +L    +      L E          +  L  FAEG   V
Sbjct: 178 FLEKNHITVRVRKDEEAVLGELKEAGVSVMKNPLTEHAYDLEGGGDLSRLNCFAEGKILV 237

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCN 282
           QDAS+ + V+  G      VLDLCAAPGGK+     L      V + D+++ + E++R N
Sbjct: 238 QDASSQLSVRAAGIRAGDRVLDLCAAPGGKSMLASDLTGPDGLVISRDLTEYKTERIREN 297

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           ++RL L   ++ E DA     + +   D V+ D PCS  G I + PD+ +  D ++    
Sbjct: 298 VERLGLSNVEVQEHDATVPDDRSVGEMDVVIADVPCSGYGVIGKKPDIKYRADAENQKNL 357

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QRK+L   +++VKPGG+++FS C++ ++++E+ V  +L      +E           
Sbjct: 358 VDLQRKILSNAMTYVKPGGVLLFSTCTIGREENEDNVDWILGRGGFSLEES--------- 408

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        ++ P             DGFF    R+  +
Sbjct: 409 ------------RQLLPG--------EDPCDGFFYARFRKKTE 431


>gi|332981565|ref|YP_004463006.1| sun protein [Mahella australiensis 50-1 BON]
 gi|332699243|gb|AEE96184.1| sun protein [Mahella australiensis 50-1 BON]
          Length = 447

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/459 (22%), Positives = 194/459 (42%), Gaps = 39/459 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  LL  +  K+  +   +     D++   L   D+  +  +V    R+   +D 
Sbjct: 4   KARNAALKLLRDIDIKKAYINLEIKPALKDNSLSTL---DRAFITDMVYGVTRYRLTLDW 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++         +    ++ +LR+ + QILY+D V D+A  D +VE AK+    +  A  V
Sbjct: 61  LIKRYSRGG--KASPWIRNILRMGMYQILYMDRVPDFAACDSSVELAKKYAG-QREAGYV 117

Query: 125 NSILRRVSREKIE--------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           N++LRR+ +EK           + RIA     PEW      N   +  V  +  A     
Sbjct: 118 NAVLRRLIQEKDHLVSLFPQDTVSRIALKYSFPEWMVRLWLNTMSETSVEELCAAQNIRP 177

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQD 227
            + +         +     L    +              E    + SLPG+ +G++ VQD
Sbjct: 178 SLTIRANELKISQDDLIKLLEQRSIMYSCGVYLPEALNIEQNVDVESLPGYDDGLFAVQD 237

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +   +        ++D C+APGGK   +   +    ++ ++DV   R+E ++    
Sbjct: 238 EASMMVAHVVDPRPGQIIIDACSAPGGKAVHMAQFMKDQGRILSVDVYPHRIELIKAQCA 297

Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL +   + +  D+  Y      + DAVL+DAPCS+ G IR  PD+ W R   DI +   
Sbjct: 298 RLGVNCVEPVCYDSTIYNEDWYGVADAVLIDAPCSALGIIRHKPDIKWRRIEKDIGELLQ 357

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR++L     +VKP G +++S C+++  +++ +V   L      +  +           
Sbjct: 358 IQRQILDTCSLYVKPRGALIYSTCTINPDENQNMVNSFLNDHSDFI--LDDVYQKLPHAL 415

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            A   S + W++  P+           +DGFF   + ++
Sbjct: 416 SASRDSRDKWVQFYPN--------EDKIDGFFVARMLKV 446


>gi|170747459|ref|YP_001753719.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653981|gb|ACB23036.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 459

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 186/442 (42%), Positives = 242/442 (54%), Gaps = 12/442 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           +G+  R  +   ++ ++ +     L   L       A   L+  D  L RAI   T R  
Sbjct: 24  AGLATRRAAMQAVASLIGQERPPALDDALAQAIRAEA---LAPADAGLARAIAVATFRRY 80

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             I A L   L   LP  K  L  LL  + AQIL L V D+A VDLAV  AK D    H 
Sbjct: 81  GLIRAALAARLERGLPAAKPQLTALLATATAQILDLAVPDHAAVDLAVRLAKADTRTAHL 140

Query: 121 AKLVNSILRRVSREKIELLQRIAGISII--PEWFKERLENFYGKERVLAISDACISPLYI 178
           A LVN++LRRV+RE+  +L   A    +  P+W   R    YG ER  AI+ A ++   I
Sbjct: 141 AGLVNAVLRRVARERDAILAADADALAVNTPDWLARRWVAAYGPERAAAIARAHLAGAAI 200

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
           DLT + D   WA +L A  LPTG +RL E   +I  LPGF EG WWVQDA+A++P +L G
Sbjct: 201 DLTPRGDAGDWAARLGAATLPTGSLRLPENGPAIPDLPGFQEGAWWVQDAAAALPARLLG 260

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
                 VLDLCAAPGGKT QL  +GA+VTA+D S  RLE+LR N+ RL   A D++  DA
Sbjct: 261 PREGTRVLDLCAAPGGKTLQLAATGARVTAVDRSAPRLERLRENVARLGF-AVDVVVADA 319

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
               P+   DAVL+DAPCS+TGTIRRHPDV WT+   DI + A  Q +LL    + V+PG
Sbjct: 320 LALEPQDH-DAVLLDAPCSATGTIRRHPDVAWTKAEADIGRLAALQARLLDHAAALVRPG 378

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+  CSL+ ++ E  V   L   P     VP+     +    A  +   G +R  P 
Sbjct: 379 GLLVYCTCSLEPEEGEAQVAAFLAREPGYAR-VPVRPD--EVGGAAALIDDCGDLRTLPC 435

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
            L +I G   G+DGFFA  LRR
Sbjct: 436 HLPEIPGARGGLDGFFASRLRR 457


>gi|325261900|ref|ZP_08128638.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           D5]
 gi|324033354|gb|EGB94631.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           D5]
          Length = 451

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/462 (21%), Positives = 194/462 (41%), Gaps = 35/462 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   ++ R +   LL  +    +     L      S ++ L ++++  +  +   TL  L
Sbjct: 1   MTKPLSDREIVLGLLLDITEHDVYSHIALGNVL--SKYQYLDKKERAFITRVTEGTLEHL 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L       + + K  ++ +LR +V Q+ Y+D V D AV + AV+ A + K    
Sbjct: 59  MELDYILGQFSKVKVKKMKPVIRNILRSAVYQLKYMDSVPDSAVCNEAVKLAVK-KGFGS 117

Query: 120 FAKLVNSILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACI 173
               VN +LR V+R    +          +    +PEW  ++    Y +E V  +     
Sbjct: 118 LRGFVNGVLRNVARGLDTVEYPKDALAALSVRYSMPEWILKKWLTEYDRETVETMLADFQ 177

Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWW 224
               + +    +    E    +L +  +                 + +  +  F EG++ 
Sbjct: 178 KEKPVTIRCNINRCLPEELEARLESEGVKAVRHLYLPYAYRITGYDYLGDMESFREGLFA 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRC 281
           VQD S+ +  ++        ++D+CAAPGGK+  L         V A D+++ +   +R 
Sbjct: 238 VQDVSSMLVGEIADPKQGDYIIDVCAAPGGKSIHLADRLSGTGHVDARDLTEYKTSLIRD 297

Query: 282 NLDRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           N+DR+ +     ++MDA   D    +  D V+ D PCS  G + R  D+ +        +
Sbjct: 298 NIDRMQMKNISAVQMDASVLDAASVEKADIVIADLPCSGLGVLGRKTDLKYRTTEKQTEE 357

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               QRK+L    S+VKPGG++++S C++++ +++E V+  L + P      P       
Sbjct: 358 LVLLQRKILDVVCSYVKPGGVLLYSTCTINRAENQENVKWFLETHPDFA---PEQLEDRL 414

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             ++   +   G +++ P +           DGFF    R+ 
Sbjct: 415 CTELQDDVRDSGCLQLLPGV--------HDSDGFFIARFRKK 448


>gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           CFBP1430]
 gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           CFBP1430]
          Length = 456

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 218/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L      +A + +  +D  LV+ +    LR L
Sbjct: 28  MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKCVDDKDAALVQELCYGVLRTL 82

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ V+  ++   +  K+ ++  L+ V + Q+++  +  +A +   VE A   K  +  
Sbjct: 83  PQLEWVISKLMSRPMTGKQRAIHFLIMVGLYQLMFTRIPPHAALAETVEGAVALKRPQ-L 141

Query: 121 AKLVNSILRRVSREKIELLQRI---AGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +LR+  R++ +L+Q++       + P+W  ERL+  +  + + +  ++    P+
Sbjct: 142 KGLINGVLRQFQRQQDQLMQQMNDGDQQYLHPKWLLERLKRAWPEQWQQIVAANNQRPPM 201

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L           L         P ++  LPGF +G   VQDAS
Sbjct: 202 WLRVNRQYHSRDAWLALLEESGKQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQDAS 261

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++ +  +  V A+DV  +RL ++  NL RL+
Sbjct: 262 AQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLN 321

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE +   D      +C   LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 322 MQAE-VKLGDGRTPAAWCGDTLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 380

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L      +K GG ++++ CS+  +++   + + L+       +   +          
Sbjct: 381 QQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHANAALVATGDLTQP------ 434

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I++ P +         G DGF+   L +
Sbjct: 435 -------GIQVLPQV--------DGGDGFYYAKLVK 455


>gi|218514046|ref|ZP_03510886.1| probable RNA methyltransferase - sun protein [Rhizobium etli 8C-3]
          Length = 380

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 199/382 (52%), Positives = 257/382 (67%), Gaps = 4/382 (1%)

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            LPRIDA +  +L S LP    +L  +L +  AQILYLDV D++ VDLAVEQA +D  NR
Sbjct: 1   HLPRIDAAIASLLESPLPEGARALHHVLSIGAAQILYLDVPDHSAVDLAVEQANQDPRNR 60

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            FAKLVN++LRR+ REK  +L  I  ++ +P WF  RLE  YG++  LAIS + + P  I
Sbjct: 61  RFAKLVNAVLRRLGREKDPVLAEIGKVAPMPSWFLARLEKAYGRDAALAISQSQLEPAAI 120

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
           DLTVK D E WA +LN V LPTGG+RL      I SL GF EG WWVQDA+ASIP +LFG
Sbjct: 121 DLTVKSDAEGWAKRLNGVALPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFG 180

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
            L+     DLCAAPGGKTAQLI++G  VTALD S+ RL +LR NLDRL L AE +   D 
Sbjct: 181 DLSGKRAADLCAAPGGKTAQLILAGGTVTALDQSESRLRRLRSNLDRLGLKAETV-AADL 239

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
             + P + FDA+L+DAPCSSTGT RRHPDVLWT+  +DI + A  Q +LL   ++ +KP 
Sbjct: 240 TTFKPAEGFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPL 299

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +VFSNCSLD  + EEVV +VL  +   +E V +++  W  ++ A  ++  G  R  P 
Sbjct: 300 GTLVFSNCSLDPAEGEEVVARVLSDT-DAIERVAISAGDWPGLEAA--ITSLGEFRTLPT 356

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           ML+  +G++SG+DGF+A  LRR
Sbjct: 357 MLKMPEGIASGLDGFYAAVLRR 378


>gi|325567768|ref|ZP_08144379.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
 gi|325158541|gb|EGC70688.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
          Length = 452

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 118/471 (25%), Positives = 203/471 (43%), Gaps = 49/471 (10%)

Query: 1   MKSGM-----NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           MK  +       R V+   L  + +       LL           L+ +D  L+  +V  
Sbjct: 1   MKRNLGDIQYTVRFVALEALLRIEKGGAYSNLLLRELMNQGR---LNDKDGRLLTELVYG 57

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
           T+     +D  LD  + ++  +    ++ LLR+S+ Q+LYLD V  +A++  AV+ AK  
Sbjct: 58  TISRQLLLDYYLDRFIKNA-RKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKA- 115

Query: 115 KENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
           K N    K VN +LR + R+         + ++R+A    +P W  ++L    G E    
Sbjct: 116 KGNPGTGKFVNGVLRTIQRQGVPDLALIKDPMERLATEISLPLWLTKKLVKQIGIEETSE 175

Query: 168 ISDACISPLY-------IDLTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFA 219
           +  A   P +         ++    IE    + ++A         +      +     + 
Sbjct: 176 LGYALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELSPYGVVADKGFMAGSSLYK 235

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKR 274
           EG+  +QD S+ +   +     +  VLD CAAPGGKT  +        G+KVTALD+   
Sbjct: 236 EGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGSKVTALDIHAH 295

Query: 275 RLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           +++ ++ N  RL + A      +   +       + FD +LVDAPCS  G +RR PD+ +
Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQFDRILVDAPCSGLGLMRRKPDIKY 355

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           ++   D  +    QR++L      +K  GI+V+S C++ ++++++VV   L   P   E 
Sbjct: 356 SKTEADFQRLPRIQREILESAAPTLKKSGIMVYSTCTILEEENQQVVAAFLADHP-EFEQ 414

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +PL         +A     E  + I P             DGFF   LR+ 
Sbjct: 415 MPLAVG-----PLAAEAVQEDMLTIYPQDFM--------TDGFFISCLRKK 452


>gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20]
 gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20]
          Length = 452

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 118/471 (25%), Positives = 201/471 (42%), Gaps = 49/471 (10%)

Query: 1   MKSGM-----NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           MK  +       R V+   L  + +       LL           L+ +D  L+  +V  
Sbjct: 1   MKRNLGDIQYTVRFVALEALLRIEKGGAYSNLLLRELMNQGR---LNDKDGRLLTELVYG 57

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
           T+     +D  LD  + ++  +    ++ LLR+S+ Q+LYLD V  +A++  AV+ AK  
Sbjct: 58  TISRQLLLDYYLDRFIKNA-RKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKA- 115

Query: 115 KENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
           K N    K VN +LR + R+         + ++R+A    +P W  ++L    G E    
Sbjct: 116 KGNPGTGKFVNGVLRTIQRQGVPDLALIKDPMERLATEISLPLWLTKKLVKQIGIEETSE 175

Query: 168 ISDACISPLY-------IDLTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFA 219
           +  A   P +         ++    IE    + ++A         +      +     + 
Sbjct: 176 LGYALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELSPYGVVADKGFMAGSSLYK 235

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKR 274
           EG+  +QD S+ +   +     +  VLD CAAPGGKT  +        G KVTALD+   
Sbjct: 236 EGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAH 295

Query: 275 RLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           +++ ++ N  RL + A      +   +       + FD +LVDAPCS  G +RR PD+ +
Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQFDRILVDAPCSGLGLMRRKPDIKY 355

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           ++   D  +    QR++L      +K  GI+V+S C++  +++++VV   L   P   E 
Sbjct: 356 SKTEADFQRLPQIQREILESAAPTLKKSGIMVYSTCTILAEENQQVVAAFLADHP-EFEQ 414

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +PL         +A     E  + I P             DGFF   LR+ 
Sbjct: 415 MPLAVG-----PLAAEAVQEDMLTIYPQDFM--------TDGFFISCLRKK 452


>gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           RCC307]
 gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           RCC307]
          Length = 454

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 194/455 (42%), Gaps = 52/455 (11%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  RLV+  +L  V          L+ E   S    LS RD+ L   +    +R   R+
Sbjct: 28  GLPPRLVAWRVLEAV-GDGAYADLALERELKRSK---LSPRDRGLATELAYGAIRQRRRL 83

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  LD +      ++   L+ LL V + QIL +D V   A V  AVE AKR++  +  A 
Sbjct: 84  DGWLDLLGKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVELAKRERL-QRLAP 142

Query: 123 LVNSILRRVS---------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +VN +LR                +  +R+A    +P+W    L    G ER  A++ A  
Sbjct: 143 VVNGVLRAAVRAVEAGESLPVPSDPQKRLALEHSLPDWLVAELWGQIGPERTEALAAASN 202

Query: 174 SPLYIDLTVK---FDIETWAHKLNAVM--LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
               +DL         E     L AV       G+ L   P  +  L GF+EG W VQD 
Sbjct: 203 RIPPLDLRCNRLRSSREALLENLPAVALAELPDGLTLTSRPGPLPQLAGFSEGQWCVQDR 262

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           +A     L        VLD CAAPGGKT  +   +    +V A+DV+ RRL+++  N +R
Sbjct: 263 AAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQGEVVAVDVAPRRLQQVSANAER 322

Query: 286 LHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L        DA D      + FD VL+D PCS  GT+ RH D  W    D I +    
Sbjct: 323 LGLSCIRTEAADATDLTDWEAESFDRVLLDVPCSGLGTLARHADARWNLKPDGIEELVGL 382

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +LL QG   +KP G +V++ C++   ++  VV+  +  +P      P           
Sbjct: 383 QHQLLEQGARLLKPDGRLVYATCTVHPAENTGVVEAFVEENPDWQFSEPP---------- 432

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                    +++ PD          G DGFFA  L
Sbjct: 433 ---------MQLWPD--------PQGGDGFFAAVL 450


>gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245]
 gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245]
          Length = 451

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 117/461 (25%), Positives = 200/461 (43%), Gaps = 34/461 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K  M +R ++  +L  +          L  +   +    L+Q D+ L   +VN  LR   
Sbjct: 4   KESMTSRELALKVLQNIESGEKKSGTALHEQLSHT---SLNQNDRALATELVNGVLRRRL 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D  +         +    L+ +LR+   Q++YLD +  +A V+ +V  A+R K   H 
Sbjct: 61  TLDTFIGRYYHHRYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRYKG-EHM 119

Query: 121 AKLVNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           AKLVN++LR ++ E          K++ +QR++  +  PEW  ER    YGKER  AI  
Sbjct: 120 AKLVNAVLRNITPETISADLDPSGKMKEIQRLSITASHPEWLLERWIARYGKERAEAILA 179

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP------GFAEGVWW 224
                      +     T    L      T  I    L    +S           +G+  
Sbjct: 180 YNNRTPLTGFRINPLKTTPQEFLATENSKTARIGKSGLENFFLSTEFSCYESAIKQGLLT 239

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           VQ+ +  +   L       ++LDLCAAPGGK+      + +   +TA+D+  ++L+KL  
Sbjct: 240 VQNPTQGLACLLCDPQPGSTLLDLCAAPGGKSTFCGELMQNTGNITAVDLYSQKLQKLSE 299

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +   L +      E DA  Y P++    +L+DAPCS TG + R  ++ W   ++ I + A
Sbjct: 300 HAGELGITIISTAEADARTYLPEQPPAVILLDAPCSGTGVLARRAELRWKLTSETITELA 359

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL    S +   G ++++ CS++ +++E+ ++  L   P  +   P + A  +  
Sbjct: 360 LLQVELLDHAASLLAENGTLLYATCSIEPKENEQQIEAFLIRHPEFMR-DPASGALPEP- 417

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             A    P G +   P           G DG FA  L++  
Sbjct: 418 -FASKAVPNGTLLTLPG-------EHEGFDGGFAQRLKKTA 450


>gi|300854445|ref|YP_003779429.1| putative rRNA subunit cytosine-methyltransferase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434560|gb|ADK14327.1| predicted rRNA subunit cytosine-methyltransferase [Clostridium
           ljungdahlii DSM 13528]
          Length = 443

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 201/457 (43%), Gaps = 42/457 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L+ V+        +L+     +      +    LV  IV  TL+++  ID +
Sbjct: 4   ARSTAVEILNEVLGSNAYSNKVLNTYLNKNNLNKKDK---ALVTEIVYGTLKYMYTIDTI 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           LD  + SSL +    +  +LR+S+ Q+ YLD + ++AVV+ AVE     K+++  +KLVN
Sbjct: 61  LDDFIKSSLKKMNIDIVNILRISIYQLRYLDKIPEFAVVNEAVEL--SKKKSKGLSKLVN 118

Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +LR   R K  L                  P W      + YG+    +I  +      
Sbjct: 119 GVLRNYLRNKDNLHCEHKDNKIDNLCFKYSFPRWMTLLFIHQYGEAVGESILQSLNYIPK 178

Query: 178 IDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V      +    + +                 +     +I   P F +G   VQD 
Sbjct: 179 VTVRVNGLKIDYKSVWDELLKNGYDIQKGKICKEAVVINRGSNIEENPLFKKGYITVQDE 238

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +   +     N++VLD+C+APGGK+  +   + +   + A D+ + +L  +  N +R
Sbjct: 239 SAMLVAHIVDPEENMTVLDMCSAPGGKSCHMAELMKNTGVIYAYDLHENKLRFVEENANR 298

Query: 286 LHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           + +      ++D   +    +   D VL+D PCS  G +R+ P++ W +    +      
Sbjct: 299 MDIKNIKCNKLDAEKYVEQFEATADRVLIDVPCSGLGIVRKKPEIKWNKSMKSLNSLINV 358

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QRK++L    +VK GG +++S C+L+K ++E+ +   +R +P   +L  +    + +I  
Sbjct: 359 QRKIMLNASRYVKDGGKLIYSTCTLNKSENEDNINWFIRENP-QYKLEKIYCGDFDNI-- 415

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 EG+I I PD           MDGFF   + +
Sbjct: 416 --IYHKEGYITILPD---------DNMDGFFIAKMIK 441


>gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum
           ATCC 824]
 gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
          Length = 441

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 198/457 (43%), Gaps = 42/457 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R +   +L+ V+        +L+          +S +D+ LV  IV  T+++   ID 
Sbjct: 3   NTRKIVLDVLNKVLSHDGFSNIVLNKALK---GEEISSKDKGLVTEIVYGTIKYKYSIDI 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   + + + +    +  +LR+S+ QI YLD + D+A V+ AV   K+    +  +K V
Sbjct: 60  IISKFVKTKINKIDKRVLNVLRMSIYQIRYLDKIPDFAAVNEAVNITKKYISLKS-SKFV 118

Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N++LR   R                        W  +     Y   +   I         
Sbjct: 119 NAVLRNYLRNPNIAFYNKDNSVEKLCFNYSFEPWMVKFFLKQYKN-KAEEILKGLNENPS 177

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDA 228
           I + V       +   ++L  +        +       +   SI + P F  G + VQD 
Sbjct: 178 ITIRVNRLKTSHKELWNELEKLDYNIEEGYILKDAIRIKKGHSIENNPLFVRGEFTVQDE 237

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +  +      NL + D+C+APGGKT  +     +   + A D+ + +++ +  N  R
Sbjct: 238 SAMLVSECMDIKENLVIFDMCSAPGGKTTHMGELLKNTGTIYAFDLHESKIKLINENAKR 297

Query: 286 LHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +   +   +D  ++        D +LVDAPCS  G IR+ P++ W ++  D+ + +  
Sbjct: 298 LGVENINASVLDASSYHDDFVNKADRILVDAPCSGLGIIRKKPEIKWNKNIKDLKELSDI 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+ +L     ++K  GI+++S C+L+K ++E+ + + L+++P   ++ P+    + ++  
Sbjct: 358 QKNILQNASLYLKKEGILLYSTCTLNKDENEKSIIQFLKNNPN-FKVEPIEFGEFPNLIY 416

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +        + I P+           MDGFF   L++
Sbjct: 417 SP-----YGVTILPNEY---------MDGFFMCKLKK 439


>gi|328952872|ref|YP_004370206.1| sun protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453196|gb|AEB09025.1| sun protein [Desulfobacca acetoxidans DSM 11109]
          Length = 456

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 200/466 (42%), Gaps = 46/466 (9%)

Query: 8   RLVSSHLLSCVMRKRIS-------LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           R ++  ++S   +  +        L  L++    D     LS  D+ L+R +V   LR+ 
Sbjct: 2   RGLAVEIISIWQKTNVPGGAPGPFLDALIEQTLSDHP--RLSHPDRALLRELVTGVLRWR 59

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            R+D  +  V    + +    +  LLR++  Q+L+LD +   A V+ +V+ AK  +    
Sbjct: 60  GRLDYAIGQVSHQPVNKLHPLVLNLLRLTTYQLLFLDRIPASAAVNESVKLAKIHRLPPA 119

Query: 120 FAKLVNSILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
               VN+  R++            +IE +  +A  +  PEW   R     G E     + 
Sbjct: 120 LIGFVNAAARKLATALPDLPLPDPEIEPVTALAVATSHPEWLAARWLERLGPEAAWKRAQ 179

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAE 220
           A      + + V        T    L    + T   R       +  L +S  +LP +  
Sbjct: 180 ANNLHPPLSIRVNTALISPATLQVVLQTEGIATESGRFSPVGLTICSLKQSPFNLPSYQR 239

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLE 277
           G+W  QD +A +   L        +L++ A  GGKT  L        ++ A+D S  R+ 
Sbjct: 240 GLWLFQDEAAQLATLLLQPQPGHGILEIGAGRGGKTTHLAQLLRGKGRILAVDHSLERMA 299

Query: 278 KLRCNLDRLHLYAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
            L  +  RL L   D++  DA       P+  FD +L+DAPCS  G +RRHP++ W R  
Sbjct: 300 ALNRSRQRLGLTGVDLLLTDATLSLPIQPEHRFDRILIDAPCSGLGVLRRHPELRWRRQP 359

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D+ + A  Q  LL Q   +++PGG++++  C+ + +++E V+   LRS P    L P  
Sbjct: 360 GDLDRFARLQAALLRQAAPYMRPGGLLLYITCTTEPEENESVMAAFLRSHP-DFALHPGP 418

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +     ++   +  +G+ R  P            +DGFFA  L +
Sbjct: 419 VSDAP--EITPFIDADGYFRTLP--------ERHDLDGFFAALLAK 454


>gi|291518519|emb|CBK73740.1| ribosomal RNA small subunit methyltransferase RsmB [Butyrivibrio
           fibrisolvens 16/4]
          Length = 423

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 198/455 (43%), Gaps = 48/455 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G+N R ++   +  ++         L        +  L + ++  +  +VN T+   
Sbjct: 1   MA-GINLREIAMETVIEILENGQFSHIYLKAVLDKYGY--LEKNERAFLNRLVNGTVERK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D ++D    + + + K  ++ ++R+ V +I Y+D V D A  +  V+ AK+ +    
Sbjct: 58  LQLDYIIDSFSKTKVKKMKPLIRTVMRLGVYEIYYMDAVPDSATCNEYVKLAKK-RGFAG 116

Query: 120 FAKLVNSILRRVSREK-IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +  VN +LR +SREK     + ++    +P+W  ++    YG E+   I    +S   +
Sbjct: 117 LSGFVNGVLRNISREKGKLEFKDLSVKYSMPQWIVDKWSADYGVEKTEEILAGFLSSEDL 176

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDAS 229
            + V       E  + +L    +                 +S+ S+P F EG+++VQD S
Sbjct: 177 CIRVNLGKISREDLSERLKKQGISVRICDTVVSACYISDYDSLASIPEFNEGLFYVQDYS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           + +         + ++LD+CAAPGGK           +V A D++++++  ++ N++R  
Sbjct: 237 SQLVPYAAKISRSQNILDVCAAPGGKALHCGELAYKGQVVARDLTEQKVSLIQENINRTG 296

Query: 288 LYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                  + DA        + +D V+ D PCS  G IR+ PD+ + +  + + +    Q+
Sbjct: 297 ALNVTAQQWDATVLDEDSIRKYDTVIADLPCSGLGIIRKKPDIKYNQTEESLSELTQLQK 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L     +VK GG++ +S C+++K ++E  ++  L S                      
Sbjct: 357 KILDTVCQYVKDGGVLSYSTCTINKSENENQIEDFLSSHKEFKV---------------- 400

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               E   ++ P+            DGFF   +++
Sbjct: 401 ----ESMTQLFPNEE---------HDGFFICVMKK 422


>gi|254295350|ref|YP_003061373.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
 gi|254043881|gb|ACT60676.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
          Length = 487

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 152/440 (34%), Positives = 222/440 (50%), Gaps = 10/440 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++G  +R  ++ +L  ++ +   +   L        F  L   D+   RAI +  LR   
Sbjct: 58  QNGWQSRRAAADILMRIVHEGADMDEALA---SSKFFDELEGPDRGFARAIASAALRAFG 114

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RID  L+  L   L +   ++  LLRV  AQ+  L    YA VD  VE A++ K      
Sbjct: 115 RIDDALETYLDRPLEKIDPAVLSLLRVGCAQLWVLKAPSYAAVDATVEAARQWKPASRGG 174

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR  RE        A     P+W  ER  +  G+E    I+   +    IDLT
Sbjct: 175 GMVNAILRRAGREPEAYESLPASRIW-PDWLSERFSSALGEETTQNIAMMQMLEPRIDLT 233

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D E WA KL    LP+G +RL     S+  L G+ EG WWVQD +A++P QLFG + 
Sbjct: 234 VKSDPEAWAQKLEGTALPSGSVRLPTGA-SLTELEGYVEGEWWVQDVAATLPAQLFGDVK 292

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            LS+ DLCAAPGGKT QL   GAKVTA+D+S++R+EK+R NL+R  L A      DA  +
Sbjct: 293 GLSIGDLCAAPGGKTMQLASKGAKVTAIDLSEQRIEKVRENLERTGLKA-KTQVTDARHW 351

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P + FDAVL+DAPCS+ GT+RRHP+  W R+   + + +  Q KL+      +K GG +
Sbjct: 352 RPAEPFDAVLLDAPCSALGTLRRHPEGAWRRNDKGLDRYSGLQIKLVQAAYDMMKSGGTM 411

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           ++  C+    +  EVV++ + S        P+        +   A+   G +   P    
Sbjct: 412 LYCVCTPLPAEGIEVVKEAVDS--GKWISKPITPEEVPGYE--HAIDDFGGLLSLPKFDI 467

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +        D F+   L ++
Sbjct: 468 ENPEDLITSDVFYMARLEKV 487


>gi|291536615|emb|CBL09727.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
           intestinalis M50/1]
 gi|291541043|emb|CBL14154.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
           intestinalis XB6B4]
          Length = 446

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 103/476 (21%), Positives = 188/476 (39%), Gaps = 66/476 (13%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R ++  +L  V         +L        ++ + + ++  +  +V  T++ +
Sbjct: 1   MTDTVNTRRLALDVLLEVTEHGAYSNQVLRAVLE--KYQYMEKYERAFLTRLVEGTIQHM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D V+D      + + K  ++ +LR+ V QI Y+D V D A  + AV+ A++      
Sbjct: 59  IELDYVIDQFSKVKVKKMKPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARK-SGFST 117

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            +  VN +LR ++R    +             +    +PEW  E   N YG E+  AI D
Sbjct: 118 LSGFVNGVLRNIARNSGSIRYPDEEKEPVLALSVRYSMPEWIVEEWLNAYGMEQTKAILD 177

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLP-----------------TGGIRLKELPE 210
           A      I +         +    +L A  +                            +
Sbjct: 178 AFSKEAPITIRTNVTKITPDALKEQLKAEGVTVQTLEELSYAGLPYTDAYHYAFAISGFD 237

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVT 267
            +++LP F +G+++VQD S+ +  +         V+D+CAAPGGK+  L         V 
Sbjct: 238 HLMALPSFQDGLFYVQDISSMMVAEAAAPEKGAHVIDVCAAPGGKSIHLAEMLDGTGSVE 297

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRH 325
           + D++  +   +  N+ R  +        DA       +   D ++ D PCS  G +R+ 
Sbjct: 298 SRDLTGYKTGLIEENISRYQIKNMTTKVWDATVPDESAEDTADVLVADLPCSGLGVLRKK 357

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            D+ +        +    QR++L    S+VK  GI+V+S C+++  +++E V   L   P
Sbjct: 358 TDIRYKMSRGQQEELEELQRRILDTICSYVKKDGIMVYSTCTINPGENQENVAWFLGKHP 417

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              EL+ +                    +I P             DGFF   LRR+
Sbjct: 418 -EFELLDME-------------------QIYPGTQVG--------DGFFYARLRRI 445


>gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC BAA-2158]
          Length = 429

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 218/456 (47%), Gaps = 44/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L      +A + +  +D  LV+ +    LR L
Sbjct: 1   MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKCVDDKDAALVQELCYGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ V+  ++   +  K+ ++  L+ V + Q+++  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWVISKLMSCPMTGKQRAIHFLIMVGLYQLMFTRIPPHAALAETVEGAVALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRI---AGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +LR+  R++ +L+Q++       + P+W  ERL+  +  + + +  ++    P+
Sbjct: 115 KGLINGVLRQFQRQQDQLMQQMNDGDQQYLHPKWLLERLKRAWPEQWQQIVAANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L           L         P ++  LPGF +G   VQDAS
Sbjct: 175 WLRVNRQYHSRDAWLALLEESGKQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A   V L    N   +LDLCAAPGGKT  ++ +  +  V A+DV  +RL ++  NL RL+
Sbjct: 235 AQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLN 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + AE +   D      +C   LFD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MQAE-VKLGDGRTPAAWCGDTLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L      +K GG ++++ CS+  +++   + + L+       +   +          
Sbjct: 354 QQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHANAALVATGDLTQP------ 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I++ P +         G DGF+   L +
Sbjct: 408 -------GIQVLPQV--------DGGDGFYYAKLVK 428


>gi|163739806|ref|ZP_02147213.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107]
 gi|161386840|gb|EDQ11202.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107]
          Length = 421

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 215/440 (48%), Gaps = 22/440 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  + HLL  V+ +      LL   Y   A   L   ++   + +   TLR L
Sbjct: 1   MSNATQARRRAIHLLDEVLGEGK----LLSECYAAGALDKLPAEERARTQRLATDTLRNL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D +L   L  + P    ++   LR+   ++     A + VV+  V+   R + +   
Sbjct: 57  ERADRILQKHLKKATP---LTVHNALRIGTVELCQGG-AAHGVVNEMVDIVSRHRRHGKL 112

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN++LR+V+        ++  +  +P+W +  L   +G   +L I  A ++   +DL
Sbjct: 113 KGLVNAVLRKVADHGPAEWAKL-RVPRLPKWLRSPLSQAWGAPAMLQIEAAHLAGAPLDL 171

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           + K   +     L AV+LPTG  R+    + +  LPGFA G WWVQDA+A++P Q+    
Sbjct: 172 SPKPGAD--LSALEAVLLPTGSYRIHNSVQ-VSGLPGFATGDWWVQDAAAALPAQILAAK 228

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
              SVLDLCAAPGGKT Q+  +GA VTA+D S  R+ +L  NL+R  L A  ++      
Sbjct: 229 PGESVLDLCAAPGGKTMQIAAAGANVTAVDQSAGRMARLSENLERTGLEATVVV---GDA 285

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 +DAVL+D+PCS+TGTIRRHPD+   +D          Q ++L    S VKPGG 
Sbjct: 286 LEQTGQYDAVLLDSPCSATGTIRRHPDLPHAKDGSGFGALIELQAQMLAHAWSLVKPGGR 345

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++  CSL   + E  V+  L   P       +        D    ++ EG +R+ PD  
Sbjct: 346 LIYCTCSLLPDEGECQVEDALEMFPDMSVGDRIRDIAGIDPDW---ITEEGGLRLRPDYW 402

Query: 421 EKIDGVSSGMDGFFAVALRR 440
             +     GMDGF+   LR+
Sbjct: 403 ADL----GGMDGFYMAELRK 418


>gi|163744097|ref|ZP_02151463.1| ribosomal RNA small subunit methyltransferase B, putative
           [Phaeobacter gallaeciensis 2.10]
 gi|161382644|gb|EDQ07047.1| ribosomal RNA small subunit methyltransferase B, putative
           [Phaeobacter gallaeciensis 2.10]
          Length = 443

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 143/440 (32%), Positives = 216/440 (49%), Gaps = 22/440 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  + HLL  V+ +      LL   Y   A   L   ++   + +   TLR L
Sbjct: 23  MSNATQARRRAIHLLDQVLGEGK----LLSECYAAGALDKLPAEERARTQRLATDTLRNL 78

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D +L   L  + P    ++   LR+   ++     A + VV+  V+   R + +   
Sbjct: 79  ERADRILQKHLKKATP---LTVHNALRIGTVELCQGG-AAHGVVNEMVDIIARHRRHGKL 134

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN++LR+V+ +      ++  +  +P+W +  L   +G   +L I  A ++   +DL
Sbjct: 135 KGLVNAVLRKVAEQGPTEWAKL-RVPRLPKWLRSPLSQAWGAPAMLQIEAAHLAGAPLDL 193

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           + K   +     L AV+LPTG  R+    + +  LPGFA G WWVQDA+A++P Q+    
Sbjct: 194 SPKPGAD--LSALEAVLLPTGSYRIHNSVQ-VSGLPGFATGDWWVQDAAAALPAQILAAK 250

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
              SVLDLCAAPGGKT Q+  SGA VTA+D S  R+ +L  NL+R  L A  ++      
Sbjct: 251 PGESVLDLCAAPGGKTMQMAASGANVTAVDQSAGRMARLSENLERTGLKATVVV---GDA 307

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 +DAVL+DAPCS+TGTIRRHPD+   +D          Q ++L    S VKPGG 
Sbjct: 308 LEQTGQYDAVLLDAPCSATGTIRRHPDLPHAKDGSGFGALIELQAQMLAHAWSLVKPGGR 367

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++  CSL   + E  V+  L   P       +        D    ++ EG +R+ PD  
Sbjct: 368 LIYCTCSLLPDEGECQVEDALEMFPDMSVGDRIRDIEGIDPDW---ITEEGGVRLRPDYW 424

Query: 421 EKIDGVSSGMDGFFAVALRR 440
             +     GMDGF+   LR+
Sbjct: 425 SDL----GGMDGFYMAELRK 440


>gi|255261461|ref|ZP_05340803.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62]
 gi|255103796|gb|EET46470.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62]
          Length = 425

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 148/441 (33%), Positives = 225/441 (51%), Gaps = 19/441 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +G   R  + HLL  ++ +      L+    G  A + L   D    + +   TLR 
Sbjct: 1   MAQTGYAPRRAAVHLLDQIIDEGR----LMSELIGGGALKHLDAGDTARAQRLTVETLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L R D +L   L         ++  +LR+   +I     A + VV+ AVE   + +    
Sbjct: 57  LDRADRMLKPFLKRKPGG---TVMNVLRLGTVEICAEGAAAHGVVNSAVEIVSKSQRTSA 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              LVN++LRRV+ +  E   R+  +  +  W +  L + YG++ V A+  A  +   +D
Sbjct: 114 MKGLVNAVLRRVAEQGSEKWNRL-PVPKLANWLRSPLVDGYGRKTVEAMEAAHFAGAPLD 172

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           L+VK DI   A  +  V+LPTG +RL +    +  L GF  G WWVQDA+A+IP ++   
Sbjct: 173 LSVKGDIAAVAEAVGGVVLPTGSVRLSD-YGQVSKLAGFEAGDWWVQDAAAAIPARILAP 231

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +   VLD+CAAPGGKT Q    GA+VTALD+S RR+ ++  NL R  L AE +   DA 
Sbjct: 232 QSGERVLDMCAAPGGKTMQAAAMGAQVTALDLSDRRMARVSENLSRTGLDAEIV-VGDAL 290

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
           D+     +DA+L+DAPCS+TGT+RRHPD+   +D  +       Q   L   +S +KPGG
Sbjct: 291 DFSEGG-WDAILLDAPCSATGTLRRHPDLPLAKDGSEFGNLIDMQGAFLDHALSLLKPGG 349

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +VF  CSL   + E  + + L   P  +  V  ++   + +D A   + EG +R+ PD 
Sbjct: 350 RLVFCTCSLLPDEGEVQIDEALERHPDLI--VDRDAVLVQGVDSAWQ-TQEGGLRLRPDY 406

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
                    G+DGF+   LR+
Sbjct: 407 WAD----QGGIDGFYMACLRK 423


>gi|163745468|ref|ZP_02152828.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45]
 gi|161382286|gb|EDQ06695.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45]
          Length = 423

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 140/441 (31%), Positives = 222/441 (50%), Gaps = 20/441 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +G+ AR  + +LL  ++        L+       A   L   D+   + +   TLR 
Sbjct: 1   MADTGVQARRSAVYLLDMILDDE---PRLMSELLASGALDKLPPDDRARAQRLAQDTLRG 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L R D +L   L  + P    +++ +LRV   ++     A + VV+  V    + +   H
Sbjct: 58  LERADRLLQKHLQKAPP---LTVRNVLRVGTVELCQGG-AAHGVVNAMVNLVSQHRTLSH 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              L N++LR+++ +  E    +     +P+W +  L   +G + + A+ +A  +   +D
Sbjct: 114 LKGLTNAVLRKIAAQGPEAWDAL-RAPRLPKWLRGPLAEAWGTDAIAAMEEAHFAGAPLD 172

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LT K D    A  +   +LPTG +R+      + ++PGFAEG WWVQDA+A+IPV++   
Sbjct: 173 LTAKGDASALAEAVGGTLLPTGSVRVMNA-GQVSAMPGFAEGDWWVQDAAAAIPVRVLAP 231

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
                VLDLCAAPGGKT QL  +GA+VTA+D S  R+++++ NL R+ L A+ + +    
Sbjct: 232 KEGERVLDLCAAPGGKTMQLAAAGAEVTAVDQSHPRMQRVKENLTRVGLKAKTLTKDARA 291

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDA+L+DAPCS+TGTIRRHPD+   +D  +       Q +L+    S +KPGG
Sbjct: 292 VQGE---FDAILLDAPCSATGTIRRHPDLPHAKDGSEFGDLIELQSELIDHAWSLLKPGG 348

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +VF  CSL   + E  V + L             +A   +   A  ++ EG +R+ PD 
Sbjct: 349 RLVFCTCSLLPDEGEVQVDEALERHGDMTVD---RAALDVAGVEAAWITEEGGLRLRPDF 405

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
                    GMDGF+   LR+
Sbjct: 406 WAD----KGGMDGFYIACLRK 422


>gi|218290478|ref|ZP_03494598.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239499|gb|EED06694.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 451

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 125/460 (27%), Positives = 202/460 (43%), Gaps = 40/460 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L  V R    L   L       A   + +RD+ L   I   TLR    +D +L
Sbjct: 6   RRRAYQALIRVERDGAYLNVALQEAL---AGAGVDERDRALATEIAYGTLRRQITLDRLL 62

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
             ++   + +    ++ +LR+   Q+ +L  V  YAV + AVE AKR +     A LVN+
Sbjct: 63  SPLVRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAVANDAVELAKRHR--PQAAALVNA 120

Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +LRR +    +                R + +  +P W  ERL   +G +RVLA   +  
Sbjct: 121 VLRRYAERAQDWEDLLNKAIAGAKDVERWSVMYSVPAWIVERLVADHGADRVLAALASMN 180

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWW 224
            P  + L         E    +L A         L       +    +  L  + +G   
Sbjct: 181 EPAPMSLRANRLRGTREEAIARLGAEGAVARPAALAEDGLRVQGQIDVTRLQAYRDGYVT 240

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           +QD  A +   L      + V+DLCAAPGGKT  +   +    ++ A DV+  ++  +R 
Sbjct: 241 IQDEGAMLVAPLLRPEPGMRVVDLCAAPGGKTTHVAELMGDRGEIDAYDVTVAKVRAIRQ 300

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
             +RL L +      D     P+ L+DA LVDAPC+  G +RR PD+ + R  +D+ K A
Sbjct: 301 QAERLGLQSVRPRLGDGRQVQPEALYDAALVDAPCTGLGVMRRRPDLRYRRRPEDVAKLA 360

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL +  + V+ GG VV+S C+L K+++E VV++V     + V +  +       +
Sbjct: 361 QLQRELLRRACAIVRSGGCVVYSTCTLLKEENESVVREVASDPSVGVRIEDVRCDLATPL 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +     G++ + P+            DGFF   LRR+
Sbjct: 421 AAMVGERSAGFL-LWPNW--------HETDGFFMARLRRI 451


>gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
           proteoclasticus B316]
 gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
           proteoclasticus B316]
          Length = 450

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 110/465 (23%), Positives = 204/465 (43%), Gaps = 44/465 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +N R +  ++L    R       LL        +  L  RD+  ++ +    L    +ID
Sbjct: 2   INIREIILNILIEYDRDGNRKPSLLKDTLE--KYDYLDTRDKSFIKRVTEGCLERNIQID 59

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++D    + + + +  ++ L+R+S  QI+++D V D A  + AV+ A + K        
Sbjct: 60  YIIDSYAKTPVRQMQPFIRALMRMSTYQIMFMDSVPDSAACNEAVKLAAKHKF-AGLKGF 118

Query: 124 VNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACI 173
           VN +LR VSR K ++              + +  +PEW  E     YG ++   + +  +
Sbjct: 119 VNGVLRNVSRGKDQIKYPDKKENGGTDYLSVMYSMPEWLCEMWIGEYGFDKTEKMLEFFL 178

Query: 174 SPLYIDLTVKFDI------ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEG 221
           SP    + V  ++      +     L           L          ++I  LPGF EG
Sbjct: 179 SPRPTTIRVTRNLPQSISVQELEQNLGEAGATVRANSLLPYALELEKTDNIKYLPGFKEG 238

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278
            + VQD S+ + V++    N   V+D+CAAPGGK+      +     V + D+S ++++ 
Sbjct: 239 QFAVQDVSSMLVVEVADPQNKQVVIDVCAAPGGKSMHAAERVYPDGTVYSRDLSDKKIQL 298

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N  RL L   +I   DA  +  +     D +L+D PCS  G + R  D+        
Sbjct: 299 IEDNALRLGLNNVNIKVNDAKIHDEELKSQADILLLDVPCSGLGILGRKNDIKHNIKPKG 358

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           + +    Q +++     +VK GG +++S C+++K ++EE+V+K+    P   +L      
Sbjct: 359 LEELTKLQWEIVKSCWDYVKIGGTLIYSTCTVNKAENEEMVRKICNELP--FKLEDFTDK 416

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +   + +G+I++ P           G DGFF   L+R+
Sbjct: 417 LPEPLRES---ASKGYIQLIPGEY--------GTDGFFIAKLKRI 450


>gi|240147074|ref|ZP_04745675.1| ribosomal RNA small subunit methyltransferase B [Roseburia
           intestinalis L1-82]
 gi|257200759|gb|EEU99043.1| ribosomal RNA small subunit methyltransferase B [Roseburia
           intestinalis L1-82]
          Length = 446

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/476 (21%), Positives = 188/476 (39%), Gaps = 66/476 (13%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R ++  +L  V         +L        ++ + + ++  +  +V  T++ +
Sbjct: 1   MTDTVNTRRLALDVLLEVTEHGAYSNQVLRAVLE--KYQYMEKYERAFLTRLVEGTIQHM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D V+D      + + K  ++ +LR+ V QI Y+D V D A  + AV+ A++      
Sbjct: 59  IELDYVIDQFSKVKVKKMKPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARK-SGFST 117

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            +  VN +LR ++R    +             +    +PEW  E   N YG E+  AI D
Sbjct: 118 LSGFVNGVLRNIARNSGSIRYPDEEKEPVLALSVRYSMPEWIVEEWLNAYGMEQTKAILD 177

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLP-----------------TGGIRLKELPE 210
           A      I +         +    +L A  +                            +
Sbjct: 178 AFSKETPITIRTNVTKITPDALKEQLKAEGVTVQTLEELSYAGLPYTDAYHYAFAISGFD 237

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVT 267
            +++LP F +G+++VQD S+ +  +         V+D+CAAPGGK+  L         V 
Sbjct: 238 HLMALPSFQDGLFYVQDISSMMVAEAAAPEKGAHVIDVCAAPGGKSIHLAEMLDGTGSVE 297

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRH 325
           + D++  +   +  N+ R  +        DA       +   D ++ D PCS  G +R+ 
Sbjct: 298 SRDLTGYKTGLIEENISRYQIKNMTTKVWDATVPDESAEDTADVLVADLPCSGLGVLRKK 357

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            D+ +        +    QR++L    S+VK  GI+V+S C+++  +++E V   L   P
Sbjct: 358 TDIRYKMSRGQQEELEALQRRILDTVCSYVKKDGIMVYSTCTINPGENQENVAWFLGKHP 417

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              EL+ +                    +I P             DGFF   LRR+
Sbjct: 418 -EFELLDME-------------------QIYPGTQVG--------DGFFYARLRRI 445


>gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7]
 gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7]
          Length = 431

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 198/456 (43%), Gaps = 50/456 (10%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  LL+ +         LLD     S F    +RD+  + A+    +     +DA+
Sbjct: 4   ARWYTVRLLTKLDENNSYSNILLDESLSRSDF---DKRDKKFIAALFYGVIERRLTLDAI 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  +  +   +  Y+L+ +LR  + Q+ Y+D V D A VD +VE AK+   N       N
Sbjct: 61  IVDLSKNPKSKLNYTLRNILRCGLYQLKYMDSVPDNAAVDESVELAKKC-RNPAAPGFTN 119

Query: 126 SILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            +LR      +   +     +R+A     PEW  ++    YGK+R L++    +      
Sbjct: 120 GLLREFIRRSKELPKTNSETERLALEYSCPEWLVKKWSFEYGKDRCLSLLKTSLGQAPTT 179

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDASA 230
           + V      IE     L A  +     ++ E         +I     + +G + VQD ++
Sbjct: 180 IKVNNLSGGIEDTLDMLIADGVTFERSKILEYAVNVANAGAIEKTEAYRQGKFHVQDIAS 239

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  +         VLDLC+APGGKT     ++ +  KV A D+   R++ +R   +RL 
Sbjct: 240 QLCCKALDPQPGDIVLDLCSAPGGKTFTIAEMMNNEGKVLAFDLHPNRVKLIRSGAERLG 299

Query: 288 LYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           L        +A  +       D VLVDAPCS  G IRR P++ + +D  +  +    Q  
Sbjct: 300 LTCVTADVNNAKIFNSDIPVADKVLVDAPCSGLGVIRRKPEIKY-KDPSEFDRLPEIQGD 358

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L     +VK  G +V+S C++ K ++++V++K L S    V                 A
Sbjct: 359 ILDTASKYVKANGTLVYSTCTVSKAENDDVIRKFLGSHKDFV----------------PA 402

Query: 407 LSPEGWIR-ITPDMLEKIDGVSSGMDGFFAVALRRL 441
              E +++ ITPDM         G DGFF   L+RL
Sbjct: 403 EDEETFMQTITPDMY--------GSDGFFIAKLKRL 430


>gi|329295652|ref|ZP_08252988.1| 16S rRNA methyltransferase B [Plautia stali symbiont]
          Length = 428

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 215/456 (47%), Gaps = 43/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++ L+  V+ K  SL+ +L      +A + L+  D  L++ +     R L
Sbjct: 1   MKKATNLRSLAAQLIERVVDKGESLSAILP-----AAQKTLANNDGALLQELCFGVTRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++A+++ ++   L  K+  L  L+ V + Q+LY  V  +A +   V  A+  K   + 
Sbjct: 56  PQLEALINKLMARPLTGKQRVLHYLIMVGLYQLLYTRVPPHAALAETVAGAEALKR-ANL 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176
             L+N +LR+  R++      + +       P W  +RL+  +  + +++  ++     +
Sbjct: 115 KGLLNGVLRQFQRQQDALLAEVNQGPQRYWHPGWLLKRLQTAWPAQWQLIVEANNQRPTM 174

Query: 177 YIDLT-VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           ++ +       + W   L     NA           E P  +  LPGF +G   VQD SA
Sbjct: 175 WLRVNRQHHSRDAWLALLTQQDQNAFSADAPDALRLEAPAPVSQLPGFEQGWVTVQDLSA 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL 288
                L    N  ++LDLCAAPGGKT  +I     A+V A+D+  +RL ++  NL RL +
Sbjct: 235 QRCALLLAPENGETILDLCAAPGGKTTHIIEIALQARVLAVDIDAQRLSRVTENLQRLGM 294

Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            + D+ + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  QR
Sbjct: 295 QS-DVRQGDGRTPAAWCDEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIDELAALQR 353

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      +K GG ++++ CS+  Q++++ +   L +    V               A+
Sbjct: 354 EILAAIWPRLKSGGTLLYATCSVLPQENQQQIDAFLATHDDAV-------------PQAL 400

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   ++ P           G DGFF V L + 
Sbjct: 401 PQGQLNGWQVFP--------AIDGGDGFFYVKLMKK 428


>gi|257868127|ref|ZP_05647780.1| sun protein [Enterococcus casseliflavus EC30]
 gi|257874598|ref|ZP_05654251.1| sun protein [Enterococcus casseliflavus EC10]
 gi|257802241|gb|EEV31113.1| sun protein [Enterococcus casseliflavus EC30]
 gi|257808762|gb|EEV37584.1| sun protein [Enterococcus casseliflavus EC10]
          Length = 452

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/471 (25%), Positives = 202/471 (42%), Gaps = 49/471 (10%)

Query: 1   MKSGM-----NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           MK  +       R V+   L  + +       LL           L+ +D  L+  +V  
Sbjct: 1   MKRNLGDIQYTVRFVALEALLRIEKGGAYSNLLLRELMNQGR---LNDKDGRLLTELVYG 57

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
           T+     +D  LD  + ++  +    ++ LLR+S+ Q+LYLD V  +A++  AV+ AK  
Sbjct: 58  TISRQLLLDYYLDRFIKNA-RKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKA- 115

Query: 115 KENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
           K N    K VN +LR + R+         + ++R+A    +P W  ++L    G E    
Sbjct: 116 KGNPGTGKFVNGVLRTIQRQGVPDLALIKDPMERLATEISLPLWLTKKLVKQIGIEETSE 175

Query: 168 ISDACISPLY-------IDLTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFA 219
           +  A   P +         ++    IE    + ++A         +      +     + 
Sbjct: 176 LGYALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELSPYGVVADKGFMAGSSLYK 235

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKR 274
           EG+  +QD S+ +   +     +  VLD CAAPGGKT  +        G KVTALD+   
Sbjct: 236 EGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAH 295

Query: 275 RLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           +++ ++ N  RL + A      +   +       + FD++LVDAPCS  G +RR PD+ +
Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQFDSILVDAPCSGLGLMRRKPDIKY 355

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           ++   D  +    QR++L      +K  GI+V+S C++  +++++VV   L   P   E 
Sbjct: 356 SKTEADFQRLPQIQREILESAAPTLKKSGIMVYSTCTILAEENQQVVAAFLADHP-EFEQ 414

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +PL         +A     E  + I P             DGFF   LR+ 
Sbjct: 415 MPLAVG-----PLAAEAVQEDMLTIYPQDFM--------TDGFFISCLRKK 452


>gi|117926942|ref|YP_867559.1| sun protein [Magnetococcus sp. MC-1]
 gi|117610698|gb|ABK46153.1| 16S rRNA m(5)C-967 methyltransferase [Magnetococcus sp. MC-1]
          Length = 452

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/460 (25%), Positives = 213/460 (46%), Gaps = 35/460 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           KS ++ R +++  +S ++ + + L   L+ +         S   +     IV  T+R + 
Sbjct: 3   KSHVSERTMAAAAVSAMLSEHLPLETALEQQI--HQQSGTSPEMRGRAHEIVVGTIRHMA 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            ++A L   +   L  K + ++ +L  ++ Q  ++    ++ VD AV+  K+   + + +
Sbjct: 61  LLEATLTRFMQKDLKAKHHYVRAVLLTALYQAQFMRTPIHSAVDEAVKLVKQQPRDHNLS 120

Query: 122 KLVNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACI 173
             VN++LRR +  ++            R+A     P W  +R E   G E   A   A  
Sbjct: 121 GFVNAVLRRSTEVELSTTWSAVKDPLKRLATRYSHPLWLVKRWEKRLGMEATEARLAAAN 180

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE---------SIVSLPGFAEGVWW 224
           +   + L +     T A  L A       + +    E          + +LPG++ G + 
Sbjct: 181 AQAPLTLRIHTPKVTVADYLAAAKQAEIEVTVCPEAEETLMLPQGAKVATLPGYSNGWFA 240

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           VQD +A    +L       ++LD CAAPGGK+A L+    +G  +TALD +++RLE++  
Sbjct: 241 VQDRAAQAVARLLAPQAGEAILDACAAPGGKSAHLVALGGAGVVITALDSAQQRLERMGE 300

Query: 282 NLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           N+ RL + +   +   DA        FD  LVDAPC+ TG IRRHPD+ W R+   + + 
Sbjct: 301 NMARLGIRSQVKLRCADATQPIEGL-FDRALVDAPCTGTGVIRRHPDIKWRRNPSGLAEV 359

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q+++L    + VKPGG++V++ CSL+  ++E+ V + L+  P    L         +
Sbjct: 360 VKQQQQILQSVAAAVKPGGLLVYATCSLEPDENEQQVARFLKEHPQWKRL---PLEAGMA 416

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +   +   G +R  P         + G+DGF+A  L +
Sbjct: 417 GILPEWIDSAGDLRTEP--------ATHGVDGFYAARLIK 448


>gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301]
 gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301]
          Length = 405

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 109/414 (26%), Positives = 175/414 (42%), Gaps = 38/414 (9%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108
             +V   +R    +DA++D +      ++   L+ +L++ + Q+ YL+ +   A V   V
Sbjct: 2   TELVYGCVRRQRTLDALIDLLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETV 61

Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENF 159
           + AK+       +  VN+ILR+  R+  E              A     P+W  +   + 
Sbjct: 62  QLAKQLGLG-GLSGAVNAILRQYLRQSEERDPLPLPSDPIAALAIHQSFPDWLVQLWSDR 120

Query: 160 YGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP-------TGGIRLKELP 209
            G +    +      P   DL +     +       L AV +           +RL + P
Sbjct: 121 LGLDEAEFLCHWFNQPPSNDLRINPLRTERSQVQAALEAVGIRSTPDPQLPQALRLIDPP 180

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKV 266
             I  LPGF EG W VQD+SA +   L       +VLD+CAAPGGK+  L   +    +V
Sbjct: 181 GPIRQLPGFDEGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGDRGQV 240

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
            A D S +RL K++ N  RL L +     +D          D +LVDAPCS  G + RH 
Sbjct: 241 IACDSSAKRLRKVQENAQRLQLSSITTRAIDGRQI-KGIQADRILVDAPCSGLGILHRHA 299

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           D  W +  D + + A  Q ++L    + +KP G +V++ C+L   ++E V+++ L+  P 
Sbjct: 300 DGRWRQSPDSVAELAQLQSEILDAAAACLKPAGTLVYATCTLHPAENEAVIEQFLQRHPD 359

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   +               G +RI P             DGFF   L+R
Sbjct: 360 WQM-----APLAADSPFQAWAEANGTLRIWPH--------RHDRDGFFGARLQR 400


>gi|304313374|ref|YP_003812972.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium HdN1]
 gi|301799107|emb|CBL47350.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium HdN1]
          Length = 492

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 207/460 (45%), Gaps = 35/460 (7%)

Query: 1   MKSGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M    + R   + +LS V+   R++      L+     SA   L + ++ L + I     
Sbjct: 1   MTQAAHVRATLAQVLSQVLPLGRQQAESLRALNDLL-PSAQERLPEAERKLAQEIAYGVC 59

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
           R+  R+D +L+ +L   L  +   L  LL V + Q+ Y  + D+A +   VE A R  E 
Sbjct: 60  RWFTRLDKLLNPLLEHPLKARDRDLHALLLVGLYQLYYTRIPDHAAISETVE-ATRQLEK 118

Query: 118 RHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
              ++LVN ILRRV REK +L        A  S  P+W  ++L+  +       + +A  
Sbjct: 119 PWASRLVNGILRRVQREKSQLETALPDSDAIRSAHPQWLVDKLKAAWPDHYAAML-EANN 177

Query: 174 SPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWW 224
               + L V       E +  +L A  +      L           ++V LPG+AEG + 
Sbjct: 178 QQAPLTLRVNLRKQSREQYLTELRAKNINASPCSLSPAGIRLERSANVVELPGYAEGWFS 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNL 283
           VQD +A +  QL        VLD CAAPGGKT  L   +     A+D   RR E++  NL
Sbjct: 238 VQDEAAQLAAQLLAPHTGERVLDACAAPGGKTTHLLEHADIHCVAIDADPRRCERIHQNL 297

Query: 284 DRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           +RL L AE +  +D            FD +L+DAPCS+TG IRRHPD+ W R   DI   
Sbjct: 298 ERLQLSAE-VHALDLQSYATQPEVMPFDRILLDAPCSATGIIRRHPDIKWLRRQSDINAL 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  LL    + +K GG ++++ CS+  Q+++ +V + L  +P  +       +    
Sbjct: 357 AEQQLSLLKTAFALLKEGGTLLYATCSVLPQENDRIVARFLAETPAAILQALQFPSQIPP 416

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +     +     ++ P           G DGFF   LRR
Sbjct: 417 ANGIPTPT---GFQLLP--------TVQGHDGFFYAMLRR 445


>gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
 gi|167652703|gb|EDR96832.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
          Length = 448

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/459 (21%), Positives = 187/459 (40%), Gaps = 39/459 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++  +L  + +K       +        F    ++D+     +   TL     ID 
Sbjct: 3   NPRELALDVLMKIDKKEELSHIAIGETLEKYQFS--EKKDRAFFTRLCQGTLERRLTIDY 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           V+D    + + + K  ++ LLR+   QIL++D + D A  +  V+ AK+ +     +  V
Sbjct: 61  VIDLYSKTKVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKK-RGFSKLSGFV 119

Query: 125 NSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N +LR                +  + ++    +PEW        Y +     I  + + P
Sbjct: 120 NGVLRTISRQKQEIPFPDRNKDFEKYLSVACSMPEWIIRHFLRSYSEAETETIVSSFLEP 179

Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQ 226
               ++        E     L          +L          + +  L  F EG + VQ
Sbjct: 180 KKTTVSWMESSGSREELIASLEKDGAKVEDGKLLPEALRISHYDFLRRLTSFREGRFIVQ 239

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +  +         +LD+C+APGGK       +    +V A D+++ + E L+ N+
Sbjct: 240 DESSMLAGKAADPKEGQKILDMCSAPGGKALYAADKLHGTGQVLARDLTEYKEELLKENI 299

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +R+          DA     +  +  D VL D PCS  G + +  D+ +  +   +    
Sbjct: 300 ERVGFENIRTQIWDARIPDERLAESMDVVLCDVPCSGLGIMGKKQDIKYNLEESALEDLV 359

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR++L   +++VKPGG ++FS C+++ +++EE  + +   +    E   L     +++
Sbjct: 360 KLQREILKTALTYVKPGGSLLFSTCTINPKENEENFRWLAGQTG--FEPEDLTPFLPETL 417

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           D+      EG+I++ P +           DGFF   LRR
Sbjct: 418 DIKTV--KEGYIQLLPGI--------HPCDGFFIGKLRR 446


>gi|218528533|ref|YP_002419349.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4]
 gi|218520836|gb|ACK81421.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4]
          Length = 454

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 171/441 (38%), Positives = 245/441 (55%), Gaps = 11/441 (2%)

Query: 4   GMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           G+ AR  +   ++ ++   + ++L   L           L   +  L RAI   + R L 
Sbjct: 19  GLAARHAAREAVATLLGPARGLALEDALAQAAR---GAGLDAGEAALARAIATASFRRLG 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I A L   L   LP  +  L  LL    AQIL L VAD+A VDL+V  AK D + +H  
Sbjct: 76  FIKAALAARLRDGLPEDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHLV 135

Query: 122 KLVNSILRRVSREKIELLQRIAG--ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN++LRR++RE+  +  + +       P+W   R +  YG+E    I+ A +    +D
Sbjct: 136 PLVNAVLRRIARERDAIRAQESDPLAHNTPDWLARRWQAAYGEETARRIAIAHLEGAAVD 195

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LTV  D E WA +L  + L  G +RL E+ +++  LPG+AEG WWVQDA+A++PV+L   
Sbjct: 196 LTVPHDPEIWAERLGGIRLDLGSVRLAEVRQAVAELPGYAEGAWWVQDAAAALPVRLLAP 255

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           ++   V+DLCAAPGGKTAQ+  +GA VTA+D S  RLE+L  NL+RL L AE +   DA 
Sbjct: 256 VSGERVVDLCAAPGGKTAQMAAAGAAVTAVDRSAVRLERLGRNLERLGLSAEVV-TADAL 314

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPCS+TGTIRRHPDV+WT+   D+V+ A  QR+LL +     +PGG
Sbjct: 315 ALPEDAPFDAVLLDAPCSATGTIRRHPDVVWTKSEADVVRLAGLQRRLLDKAARLTRPGG 374

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL+ ++    V   L  +P   E + +     +    A  +   G +R  P  
Sbjct: 375 RLVYCTCSLEPEEGSAQVAAFLARNP-DFERIAITPD--RLSGHAELIDASGDLRTLPSH 431

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           +    G + G+DGFFA  LRR
Sbjct: 432 VVGGIGRAGGLDGFFASLLRR 452


>gi|254509818|ref|ZP_05121885.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11]
 gi|221533529|gb|EEE36517.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11]
          Length = 419

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 138/439 (31%), Positives = 219/439 (49%), Gaps = 25/439 (5%)

Query: 1   MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +    AR  + +LL  ++ +      LL       A   L+  D+   + +   TLR 
Sbjct: 1   MSNSATAARRSAIYLLDQILGEGR----LLPECLAAGALDRLAPEDRARAQRLTIETLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L R D +L   L  +      ++   LR+   ++   + A + VV+  VE   R +++  
Sbjct: 57  LERADRLLADHLRQTP---ALTVHNALRLGTVELCQGE-AAHGVVNAMVEIVGRSRKHGR 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              LVN++LR+++ +  +   ++  +  +P+W ++ L   +G+E V ++  A      +D
Sbjct: 113 LKGLVNAVLRKIAADGPDAWPKM-RVPRLPDWLRDPLIMAWGQEAVKSMEQAHFLGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           +T+K      A   +   LPTG +RL+E    + +LPG+  G WWVQDA+A++PVQ+   
Sbjct: 172 ITLKPG----AESPDGTNLPTGSVRLQEA-GQVSALPGYKAGGWWVQDAAAALPVQVLAP 226

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
                VLDLCAAPGGKT QL  +GA VTALD+S+ RL ++  NL R  L A  I      
Sbjct: 227 KPGEKVLDLCAAPGGKTLQLAAAGADVTALDISEARLARVHDNLQRTGLKATVIAADALD 286

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +     +DA+L+DAPCS+TGTIRRHPD+ + +D  +       Q ++L    S +KPGG
Sbjct: 287 HH---GQYDAILLDAPCSATGTIRRHPDLPFAKDGSEFGGLIALQAQMLAHAWSLLKPGG 343

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL   + E  V++ L   P                D    ++ EG +R+ PD 
Sbjct: 344 RLVYCTCSLLPDEGEVQVEEALAQHPDMQINRAALDIAGVERDW---VTQEGGLRLRPDY 400

Query: 420 LEKIDGVSSGMDGFFAVAL 438
                    GMDGF+   L
Sbjct: 401 WSG----KGGMDGFYIACL 415


>gi|94971255|ref|YP_593303.1| sun protein [Candidatus Koribacter versatilis Ellin345]
 gi|94553305|gb|ABF43229.1| sun protein [Candidatus Koribacter versatilis Ellin345]
          Length = 432

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 114/451 (25%), Positives = 191/451 (42%), Gaps = 32/451 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     +R  +  +L  V R +   + LL           LS  D+ L   +V  TLR+ 
Sbjct: 1   MSKN-PSRATAFDILLRVERDQAFASELL----HSDRLNDLSAPDRGLATELVMGTLRWQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +DA++       L +    +   LR++  Q+ +LD +   A V+ +VE  KR ++ R 
Sbjct: 56  STLDALVATQSSQPLRKLDIEVLIALRLAAYQLQFLDRIPANAAVNESVELVKRARK-RS 114

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                N++LR++S+   E+   +A     P W   R  + YG +   +IS    +     
Sbjct: 115 AVPFANAVLRKISKLPREIHGDLA----HPAWLVARWRDNYGGDAAESISKYGQTTPETA 170

Query: 180 LTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASAS 231
           L + FD         +L    +     RL           +     F  G  W+QD ++ 
Sbjct: 171 LRLPFDAEKRAKVEAELQENGVELAPGRLLNAARRLVSGDLSGTAAFQRGDVWIQDEASQ 230

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLY 289
           +   L G  +   +LD CAAPGGKT+ L        + AL++ +   ++ R   +R+   
Sbjct: 231 LVALLTG--HGDRILDCCAAPGGKTSVLAERNPSSKIVALELHE---QRARLLRERVRAS 285

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             D+   DA ++  +  FD VL D PCS TGT+ R+P++ W    +D+      Q  +L 
Sbjct: 286 NVDVQTADATNFRAETAFDCVLADVPCSGTGTLARNPEIKWRLKPEDLADLQQRQIAILR 345

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
             +S + PGG +V+S CSL+ ++ E VV+  L       EL P      +         P
Sbjct: 346 AALSQLAPGGRLVYSTCSLEPEEGEAVVEASLT---DEFELQPAAPELEQFAPAFAIPDP 402

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  +R       +        +GFFA  + R
Sbjct: 403 QTLVR---GPYLRTIPGIHPCEGFFAAVITR 430


>gi|291543913|emb|CBL17022.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           sp. 18P13]
          Length = 434

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 177/445 (39%), Gaps = 37/445 (8%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             LL      +      LD    DS    L+ + +  V A+    +  LP +D VL    
Sbjct: 9   VRLLDKTFGAQGYSNIALDRALRDS---DLNPQQKSRVSALYYGVIERLPELDYVLSRYS 65

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR-- 129
                +   +++ LLR  V Q+ ++ + D A V+  V   K+ +     +  VN++LR  
Sbjct: 66  KKPPEKLDPTVRNLLRCGVYQLAHMRIPDNAAVNECVNACKKLRYT-SASGFVNAVLRGF 124

Query: 130 ----RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
               +      +   R       P+W  ++L + YG+  + A+    +    + L     
Sbjct: 125 VRDGKQIPVPKDPALRRQVQYCAPDWLIKQLSSEYGESVMDALLTDALGRPPVTLRRNPL 184

Query: 186 IETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               +  L A         P      +     +     FA+G++ VQD ++ +       
Sbjct: 185 AGDASAFLRAMGEISVEKHPLLPDCYRVQGGDVTRTDAFAQGMFHVQDLASQLCCLALDP 244

Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
               +VLDLCAAPGGK+  L   +    ++ A D+   R++ +     RLHL        
Sbjct: 245 QLGDTVLDLCAAPGGKSFTLAELMEDRGQLYAFDLHTNRVKLIAQGAQRLHLQCVHARTG 304

Query: 297 DAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
           DA  + P+    D VL D PCS  G IRR P++ + +D          Q K+L     +V
Sbjct: 305 DASLHNPELPQADRVLCDVPCSGLGVIRRKPEIKY-KDPAAFTGLPPVQAKILENAAHYV 363

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KPGG +V+S C+L + +++ VV   L+  P   E V       +             + +
Sbjct: 364 KPGGYLVYSTCTLSRAENDGVVDGFLQQHP-EFEGVSFLETLGEPFGNWK-------VTL 415

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P  L        G DGFF   L+R
Sbjct: 416 HPGCL--------GSDGFFMAKLKR 432


>gi|315640285|ref|ZP_07895402.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
 gi|315483947|gb|EFU74426.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
          Length = 449

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/468 (24%), Positives = 191/468 (40%), Gaps = 46/468 (9%)

Query: 1   MKSGMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M   +    R ++  LL  V +        +      +    L+++D  L+  +V  T+ 
Sbjct: 1   MSKTVTKTVRYIAFTLLERVDKGGAYSNLAIKEAIATTQ---LNEKDARLLTELVYGTIG 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
              R+D  L   L  +  +    ++ LLR+SV Q+ +LD V  +A+ + AVE AK  + N
Sbjct: 58  NQLRLDYYLAPFLKKA-KKVDRWVKVLLRMSVYQLHFLDKVPSHAIFNEAVEIAK-YRGN 115

Query: 118 RHFAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
               + VN +LR       R   +  E ++R++    +P W  + L    G E    +  
Sbjct: 116 VGVGQFVNGVLRQLQRVGVRDVEQIAEPMERVSITYSLPMWLVQALVKQIGLEATAELGA 175

Query: 171 ACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGV 222
           + + P ++   V   + T    L+        A       + L      +     F  G 
Sbjct: 176 SLMKPSHVSARVDTRVCTMQEALDSLAAEGITAQPSAISPVGLVGEKGFLAGSELFTRGQ 235

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLE 277
             +QD S+ +   +        VLD CAAPGGKT  +        G +V ALD+   ++ 
Sbjct: 236 LTIQDESSMLVAPMLAIEPGDKVLDACAAPGGKTTHIATYLDAEKGGEVRALDIHPHKVA 295

Query: 278 KLRCNLDRLHL-YAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
            +  N  RLH+       ++DA         + FD +LVDAPCS  G IRR PD+ + + 
Sbjct: 296 LIEENAMRLHVETVVHAQQLDARKVSEVFAPETFDRILVDAPCSGIGLIRRKPDIKYQKT 355

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
             D       Q  +L      +K GG +V+S C++ ++++E+VV   L   P    + P+
Sbjct: 356 PQDFTNLPKIQLSILESVAPTLKSGGRMVYSTCTIMEEENEQVVAAFLAKHPEFELVEPV 415

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            S   +          +  + I P             DGFF   L++ 
Sbjct: 416 VSESVRGAI------KDHMLTIYPQAF--------HTDGFFISCLQKK 449


>gi|291522862|emb|CBK81155.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus
           catus GD/7]
          Length = 455

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 114/463 (24%), Positives = 200/463 (43%), Gaps = 38/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R +   +L  V ++      LL        ++ L +RD+  +  +   TL + 
Sbjct: 1   MADNINTRAIVYDMLMSVEKENTPSHLLLSQTL--MKYQYLDKRDRAFISRLFRGTLEYE 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D V+       L + K  ++ +LR+SV QIL +D + D A  D AV+  ++ +  ++
Sbjct: 59  IFLDGVIRQFSSVRLNKIKTPIKAILRMSVYQILKMDHIPDAAACDEAVKLTRK-RGLKN 117

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            +  VN +LR +SR K  +             +    +PEW  E     YG E    +  
Sbjct: 118 LSGFVNGVLRNISRNKEVIHYPDPEKTPAAYLSMRYSVPEWLAEMWLRDYGFEMTAEMGQ 177

Query: 171 ACI--SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGV 222
           A +      + +    ++      L +  L      +          + + ++  FA+G 
Sbjct: 178 AMLDDQKTTVRVRDSQNMAAVKEALRSEGLHIEEGCMLPEALHLSGYDYLGNVGPFADGR 237

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
              QD SA +     G     S++D+CAAPGGK+  +        +V+A D+++ ++ K+
Sbjct: 238 ITAQDESAMLAAVAAGIAGGESIIDVCAAPGGKSMHMADILKGSGQVSARDLTEAKVLKI 297

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           + NL R  L        DA  + P+  +  D V+ D PCS  G + R  D+  +   + I
Sbjct: 298 QENLKRTGLKNVSAEVKDALVFYPEDAQKADIVMADLPCSGLGVMGRKADIKRSVTPEKI 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
              A  QR++L     +VKPGGI+V+S C++ K ++EE +Q      P  +E +      
Sbjct: 358 TALAALQREILSVVQHYVKPGGILVYSTCTVSKAENEENMQWFEEHFPFGLESLDA---- 413

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +    +    +  GWI+I P   +         DGFF    RR
Sbjct: 414 YIPEKVRNEQTKAGWIQILPGQYQS--------DGFFIARFRR 448


>gi|289422320|ref|ZP_06424170.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
           anaerobius 653-L]
 gi|289157265|gb|EFD05880.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
           anaerobius 653-L]
          Length = 446

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 112/466 (24%), Positives = 201/466 (43%), Gaps = 49/466 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR ++  +L  + +        L+    DS    L+ +D+ L   IV   +     +D
Sbjct: 1   MTARNIAYKVLLDIEKNSNYSNIALNKFLKDSK---LTNKDRGLATEIVYGVVANKRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++      + +  +S++ +LR+ V Q+LYLD VADY V+D AV+  K+   +R  +  
Sbjct: 58  YMINKKSKIKVKKMNHSVKIILRMGVYQLLYLDRVADYGVIDEAVKMMKKI--DRRSSGF 115

Query: 124 VNSILRRVSREKIEL------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN+ILR +SREK  +       + +A      +W  +R+ + YGKER   I  A      
Sbjct: 116 VNAILRNISREKDRILDLDDSYKNLAIKYSYEDWIVDRISDQYGKERTSNILAALSMRPR 175

Query: 178 IDLTVKFDIETWAHKLNAV-----------------MLPTGGIRLKELPESIVSLPGFAE 220
           I L +  +       L+ +                           E  + I +   F  
Sbjct: 176 IFLRINRNKLRDGENLSDLKKYIVDRLEKDGVIVRDRHILEEAIEVENFKQIENKDLFKS 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLE 277
           G   VQD S+ +  +      N  VLDLCAAPGGK+  +           A DV   +++
Sbjct: 236 GYISVQDISSMMVARALNPKKNSKVLDLCAAPGGKSCHIGEMMKDSGSVLACDVFDHKIK 295

Query: 278 KLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            ++   +RL L      I      +      FD V+ D PCS  G +RR P++ + +   
Sbjct: 296 LIKAYSNRLGLTNIEACINNAMVINEDYVGAFDYVVCDVPCSGMGIVRRKPEIKYKKKEG 355

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            +      QRK+L     ++K  G++++S C++ K+++ E++++ L+ +           
Sbjct: 356 -VDSLPKIQRKILDNASKYIKKDGVLIYSTCTIFKEENIELIEEFLKDNKEF------KL 408

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +++        +G++ I PD           MDGFF   ++++
Sbjct: 409 DSIENLPFERERLDKGYLEIIPD--------RDDMDGFFICRMKKI 446


>gi|95928560|ref|ZP_01311307.1| sun protein [Desulfuromonas acetoxidans DSM 684]
 gi|95135350|gb|EAT17002.1| sun protein [Desulfuromonas acetoxidans DSM 684]
          Length = 479

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 196/464 (42%), Gaps = 41/464 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L+ V         +LD     +    L  RD+ L   +V   LR    +D +
Sbjct: 29  ARRIAFDVLTRVDEGG-YSDLVLDAALEANP--GLDPRDRALATELVYGVLRRRGNLDFI 85

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L       L + +  + +LLR+ + Q+ YLD + D AVV   VE A+R       + LVN
Sbjct: 86  LKAYSRQPLKKLQPKVLRLLRLGIYQLCYLDRIPDRAVVHSMVELARRC-GLERVSGLVN 144

Query: 126 SILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACISPL 176
            +LR   RE   ++                 +P W  +R    YG E  +A++++ +S  
Sbjct: 145 GVLRSYLREPNRVVWPDPRRDTQGWLEHGLSLPHWLAQRWLVQYGAEGAMALAESQLSAP 204

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227
            + + V         +  +L    +     R      +      +  LPG  EG + VQD
Sbjct: 205 PVTVRVNTLKMTRNAFVAQLKQRDIAAEPTRFAPEGVVLPHAGDLQRLPGREEGWYQVQD 264

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +   L        +LD CAAPGGKT     L  + +++ ALD+  +RLE L+    
Sbjct: 265 EASMLIAHLLSVEPGQRLLDGCAAPGGKTTHLAALTDNRSEILALDLHSQRLEILQQGAK 324

Query: 285 RLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL       +  D    C       FD VL+DAPCS  G +RR+P+  W R   DI   A
Sbjct: 325 RLGCQQIRTLACDMTQPCEDLSAGGFDRVLIDAPCSGLGVLRRNPESRWRRKQTDIKVLA 384

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR++L Q    V PGG++++S C+   ++S  VV   L   P+ V+   +N A     
Sbjct: 385 KTQRQILHQAAELVVPGGLLLYSLCTTTPEESTAVVADFLAHHPMYVQ---VNLANRVPK 441

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                   +G +           G    MD FFA    R  QP+
Sbjct: 442 HWEGLFDDDGQL-------VTRTGEHGPMDCFFAAGFYR--QPE 476


>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
 gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
          Length = 444

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 195/461 (42%), Gaps = 42/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R ++  +L  V+ K        +        R L + D+  ++ +V   +     +D
Sbjct: 1   MKPRKIAYKILQEVLSKEAYANISFNKHLK---GRELKEVDRDFIKKLVFGVIERKYTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L F +      K       L + + Q+LY+D V  YA ++  V  AK     +  A  
Sbjct: 58  FILSFFVKKPADEKSKIF---LEMGLYQLLYMDKVPSYAAINETVNIAKNVLGIKR-ANF 113

Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174
           +N++LR   REK +++                  P+W  ERL N Y +E+  A+  +   
Sbjct: 114 INAVLRSYEREKEKVIFPDKERDLRKYLMVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226
              I   V     DIE     L +  +           L    ++  S   + EG+ ++Q
Sbjct: 174 KPKICYRVNTLKIDIEDLKKLLVSRGIVYKKGYYLEEALYIDIKNPESHQLYKEGLIYIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +  ++       +VLD+CAAPGGKT  +   + +   V A D+   RLE ++ N 
Sbjct: 234 DEASMLVSKILNPNEGETVLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENC 293

Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340
            RL +        D+     K     D VL D PC+  G IR+ PD+        +I + 
Sbjct: 294 KRLGITNVKAEAFDSTFVNDKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTKSEISQL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q K+L     +VK  G +V+S C++  +++  V+ K L+  P    LV + +     
Sbjct: 354 VETQYKILDSSSKYVKKDGFLVYSTCTIGVEENHNVIMKFLKEHPN-FRLVDIKAEMPSG 412

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +++  A    G+I+ TP        +  G+DGFF   L+R+
Sbjct: 413 LNIETA--SLGYIQTTP--------LEHGIDGFFISKLKRI 443


>gi|149182346|ref|ZP_01860824.1| sun protein [Bacillus sp. SG-1]
 gi|148849965|gb|EDL64137.1| sun protein [Bacillus sp. SG-1]
          Length = 445

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 109/463 (23%), Positives = 199/463 (42%), Gaps = 43/463 (9%)

Query: 1   MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G    R  +  +L  V + +     LL+          +   D  L+  +   T++ 
Sbjct: 1   MSKGKKTVREAALDVLESVEKNQSYSNLLLNHAIEKY---GIKGPDTGLLTELTYGTIQR 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              +D  L   +   +      ++QLLR+S+ Q++YLD + D AV+  AVE  KR + ++
Sbjct: 58  RMTLDFYLAPFINKKIES---WVRQLLRLSLYQMIYLDKIPDRAVLFEAVEIGKR-RGHK 113

Query: 119 HFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
             A ++N ILR + R+         + ++R+A  +  P+W  +R    +G E+   + + 
Sbjct: 114 GIASMINGILRSIQRKGVAAIESIEDPVERLAIETSHPQWLVKRWTEQFGIEKTREMCET 173

Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVW 223
            I+  +    V       +    +L    L           +  L  ++     F +G+ 
Sbjct: 174 NITAPHQSARVNTLRITVDELIDRLTEEGLTVQKSSIVPNAIISLKGNLAKTAAFKDGLL 233

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            +QD S+ +         + +VLD CAAPGGKT  +   +    KV ALD+ K +++ + 
Sbjct: 234 TIQDESSMLVGHSLDVHEDFTVLDSCAAPGGKTTHIAQLMEGKGKVFALDLHKHKIKLIN 293

Query: 281 CNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            N  RL L   +    D+         + FD +LVDAPCS  G +RR PD+ +T+   D+
Sbjct: 294 ENASRLGLGNIESKAHDSRRAGELFAAESFDRILVDAPCSGLGVLRRKPDIKYTKKESDL 353

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q ++L      +K GG++V+S C++D+ +++  V++ L  +    E  P    +
Sbjct: 354 ESLQTIQLQILEAVSPLLKKGGLLVYSTCTVDRNENQGTVKEFLDGNK---EFQPFPLTH 410

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          +++ P           G DGFF    ++
Sbjct: 411 LPETVQPFVEG--NMLQVFPQDF--------GGDGFFISCFKK 443


>gi|262195801|ref|YP_003267010.1| sun protein [Haliangium ochraceum DSM 14365]
 gi|262079148|gb|ACY15117.1| sun protein [Haliangium ochraceum DSM 14365]
          Length = 501

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 178/470 (37%), Gaps = 46/470 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  +L  V ++    T  L      S    L  RD+ LV  +   +LR   R+D  
Sbjct: 44  VRDVAHRVLRQVAKEGAFATLALGAALKSS---GLDARDRALVTELCYGSLRQQMRLDRA 100

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  +    L +   +   +LRV+  +IL+L  V  +A V+ AV  A+R    + FA   N
Sbjct: 101 LAALTPRGLGKLDAATLSILRVAAYEILFLERVPAHASVNSAVRAARR-LGGQRFAGFAN 159

Query: 126 SILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR ++         + E    +A     P W  + L        +     A   P  +
Sbjct: 160 GVLRTLAREGEPALPPESEPRAHLAIAWSTPGWILDALSEMVPAAELSEAVAAFNQPAPL 219

Query: 179 DLTVKF-DIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWWVQDAS 229
            L      +E  A +L A+    G           L E          FAEG + VQD  
Sbjct: 220 TLRAHGVSVEALAERLRALHPQGGFSLSPLAPQALLAEGLGDPELSQAFAEGQFAVQDLG 279

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +   L        VLD CA  GGK+A L   +    +V A D S  +L        RL
Sbjct: 280 AQLAAHLLAPAAGARVLDACAGVGGKSAHLAALVGPEGRVDAADRSAGKLRLCAEGAARL 339

Query: 287 HLYAEDIIEMD--------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
                    +D               + +DAVL+DAPCS  G +RRHP+        D+ 
Sbjct: 340 GADNVHTAALDLASDDAVAWAQAGLAEAYDAVLLDAPCSGMGVLRRHPEAKLRLQPGDVG 399

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q +LL    + V+PGG++V+S C+  + +    +   L          P + A  
Sbjct: 400 EMAALQARLLDAVSARVRPGGVLVYSVCTFTRAEGPAQIAAFLDRRDEFALEAPPSPAES 459

Query: 399 KSIDMAMALSPE------GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                A  L+ E      G IR  P           G DGFF   LRR  
Sbjct: 460 GVDWAAAGLTSEAAGAGAGTIRTWPH--------RHGADGFFLARLRRRA 501


>gi|292670256|ref|ZP_06603682.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
 gi|292648208|gb|EFF66180.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
          Length = 448

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 104/457 (22%), Positives = 183/457 (40%), Gaps = 42/457 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   +  V          L      +     ++RD+  +  +V   ++    ID +
Sbjct: 12  VRELAMQTILRVHGAGAYANVALAETLRAARP---TERDRRFLTELVYGVVKAGDTIDYM 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +   +   L + + +++ LLR+   QI ++D +   A  + AVE AK+    R  A  VN
Sbjct: 69  IGKYVS-DLRKAQPAIRTLLRLGFYQIFFMDKIPVSAACNTAVELAKKYGR-RGAASFVN 126

Query: 126 SI-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +         R +  K    + +A     P W  ER    YG ER  A+     +   +
Sbjct: 127 GVLRTALREPERAALPKGRDARSLALREQHPLWMTERWVRAYGYERAEALCRCNNTSAPL 186

Query: 179 DLTVKF---DIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            +              K  A  +            +     ++  L    EG+  VQD S
Sbjct: 187 SVRTNTLRISRTQLIEKFKAAGVKARTSAWVPEGVILRAHGALNVLAPLHEGLAQVQDES 246

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   +      ++V+D CAAPGGKT      + +  ++ A D+ + ++ ++  N  RL
Sbjct: 247 SMLVTHVLAPEPGMTVIDACAAPGGKTTHIAQRMENCGRILAFDIYEEKIRRIERNAKRL 306

Query: 287 HLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   +   +DA +         D VLVDAPCS  G +RR PD  W +   D       Q
Sbjct: 307 GISIIEAAVLDAREIGAHYKEQADRVLVDAPCSGLGVLRRKPDARWRKSASDRKTLPPLQ 366

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R++L      V+ GG++V+S C+++  ++  VV+  L++ P         S       + 
Sbjct: 367 REILASAAQTVRKGGVLVYSTCTMEDCENTAVVEHFLKTHPDF-------SLEETGAFLP 419

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                E  ++I P         + G DGFF   +RRL
Sbjct: 420 GKKRSEQMVQIMP--------ETDGPDGFFIARMRRL 448


>gi|254559138|ref|YP_003066233.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Methylobacterium
           extorquens DM4]
 gi|254266416|emb|CAX22180.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Methylobacterium
           extorquens DM4]
          Length = 454

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 171/441 (38%), Positives = 245/441 (55%), Gaps = 11/441 (2%)

Query: 4   GMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           G+ AR  +   ++ ++   + ++L   L           L   +  L RAI   + R L 
Sbjct: 19  GLAARHAAREAVATLLGPARGLALEDALAQAAR---GAGLDTGEAALARAIATASFRRLG 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I A L   L   LP  +  L  LL    AQIL L VAD+A VDL+V  AK D + +H  
Sbjct: 76  FIKAALAARLRDGLPEDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHLV 135

Query: 122 KLVNSILRRVSREKIELLQRIAG--ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN++LRR++RE+  +  + +       P+W   R +  YG+E    I+ A +    +D
Sbjct: 136 PLVNAVLRRIARERDAIRAQESDPLAHNTPDWLARRWQAAYGEEAARRIAVAHLEGAAVD 195

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LTV  D E WA +L  + L  G +RL E+ +++  LPG+AEG WWVQDA+A++PV+L   
Sbjct: 196 LTVPHDPEIWAERLGGIRLDLGSVRLAEVRQAVAELPGYAEGAWWVQDAAAALPVRLLAP 255

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           ++   V+DLCAAPGGKTAQ+  +GA VTA+D S  RLE+L  NL+RL L AE +   DA 
Sbjct: 256 VSGERVVDLCAAPGGKTAQMAAAGAAVTAVDRSAVRLERLGRNLERLGLSAEVV-TADAL 314

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPCS+TGTIRRHPDV+WT+   D+V+ A  QR+LL +     +PGG
Sbjct: 315 ALPEDAPFDAVLLDAPCSATGTIRRHPDVVWTKSEADVVRLAGLQRRLLDKAARLTRPGG 374

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL+ ++    V   L  +P   E + +     +    A  +   G +R  P  
Sbjct: 375 RLVYCTCSLEPEEGSAQVAAFLARNP-DFERIAITPD--RLSGHAELIDASGDLRTLPSH 431

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           +    G + G+DGFFA  LRR
Sbjct: 432 VVGGIGRAGGLDGFFASLLRR 452


>gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 430

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 205/458 (44%), Gaps = 47/458 (10%)

Query: 1   MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+   N R +++  L  V+ +  SL+ +L     +     +S++D+ L++ +    LR 
Sbjct: 1   MKNTPYNLRAIAAKALGSVLDQGQSLSTVLPALSKE-----VSEKDRALLQELCFGVLRV 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           LP+++  +  ++   L  K+  L  L+ V + Q++Y  +  +A +   V  A   K  + 
Sbjct: 56  LPQLEWYIQQLMAKVLTGKQRPLHYLIMVGIYQLVYTRIPPHAALAETVNGAVALKRPQ- 114

Query: 120 FAKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
              L+N +    +R   +  E  Q      + P W  +RL+  Y ++   +I DA     
Sbjct: 115 LKGLINGVLRQFQRQEDQLKERAQNNECRFLHPSWLLKRLQQAYPQQW-ESIVDANNQRP 173

Query: 177 YIDLTV---KFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227
            + L V       + +   L    +              E    +  LPGF +G   VQD
Sbjct: 174 PMWLRVNRLHHSRDEYLALLAKAEINAFAHPQFPDAICLEEASPVGRLPGFEQGWVTVQD 233

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDR 285
           ASA   V L    N   +LDLC APGGKT  ++     A V A+DV + RL +++ NL R
Sbjct: 234 ASAQHCVDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDENRLRRVKENLHR 293

Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L   AE +   D      +C  K FD +L+DAPCS+TG IRRHPD+ W R   DI + A 
Sbjct: 294 LQQQAE-VKCGDGRYPEKWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAA 352

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q++++      +K GG++V++ CS+  +++ + +++ L   P    ++  +        
Sbjct: 353 LQKEIIEAIWPHLKSGGVMVYATCSVLPEENAQQMREFLSRHPEAQLMITGDQKNPG--- 409

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                             ++    +   DGFF   L +
Sbjct: 410 ------------------QQHLPHAQDGDGFFYAKLIK 429


>gi|126727795|ref|ZP_01743625.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2150]
 gi|126702922|gb|EBA02025.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2150]
          Length = 423

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 155/437 (35%), Positives = 219/437 (50%), Gaps = 23/437 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR  +  L+  V+  +  LT L         FR L   D+     +   TLR + 
Sbjct: 8   KEGLIARRAAVRLIDEVLENQRPLTDLTSN------FRALPAADKARAMRLAMTTLRNVG 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R D VL   L         ++  +LR++V +I +    DYAVVD AV   ++ + + HFA
Sbjct: 62  RADQVLIPYLRKPPLG---TVMNILRLAVTEICHEGAQDYAVVDSAVAMTRKLRNSSHFA 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LR+V+R+      +    + +P+W +  L   YG + + +I  A  +P  +DLT
Sbjct: 119 GLVNAVLRKVARDGQAAWDK-ETDTELPDWIRLPLIKAYGMKGIESIEAAHAAPPPVDLT 177

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                      L   MLP G +RL +    I  LPGF  G WWVQDA+A+ PV       
Sbjct: 178 F---KNAPTEGLVGEMLPNGSMRLSDS-GQISILPGFETGDWWVQDAAATYPVLALAAQK 233

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              VLD+CAAPGGKT Q+  SGA VTA+D S  RL+ +  NL R  L AE +   DAFD 
Sbjct: 234 GERVLDMCAAPGGKTMQMAASGAHVTAVDQSAERLKLVHENLARTGLDAEVV-VADAFDL 292

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                +DA+L+DAPCS+TGT+RRHPD+ + +D  D+      Q ++L   ++ +KPGG +
Sbjct: 293 TEGG-YDAILLDAPCSATGTLRRHPDLPFVKDGKDVGAIVALQGRMLDHALTLLKPGGRI 351

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL  Q+ E  VQ  L        L P  S            + EG  R+ PD   
Sbjct: 352 VYCTCSLFPQEGEIQVQTALERHKGLKVLEPDTSIGGLD---PKWRTSEGGYRLRPDFWA 408

Query: 422 KIDGVSSGMDGFFAVAL 438
                  GMDGF+   L
Sbjct: 409 D----KGGMDGFYFAVL 421


>gi|224369793|ref|YP_002603957.1| RsmB [Desulfobacterium autotrophicum HRM2]
 gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2]
          Length = 455

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 116/459 (25%), Positives = 195/459 (42%), Gaps = 45/459 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++  +L      + +L  +L+     +    L+ RD+ L  AI+  TLR+   +D +
Sbjct: 16  PRFLALTILIENESSKFTLDKILERY--SAQLESLAHRDRALANAIIYGTLRWKEHLDWL 73

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       L + + ++   LR ++ Q +++D    +        A +   N   A  VN+
Sbjct: 74  ITPFSKRPLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSNTGAAGFVNA 133

Query: 127 ILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACISPLY 177
           +LR+ +   +++    +             IP W   R    +G +  +A+ DA  +   
Sbjct: 134 VLRKATTRYMDVAMPDSKKDPALFISKSQSIPLWLSRRWIRRFGLDASIALLDAINTIPP 193

Query: 178 IDLTVKF---DIETWAHKLNA-------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           I L       D  + A  L               G+ +      +     F EG++ VQD
Sbjct: 194 ITLRANTLRTDRASLATALEPHVETIVPTFHTPDGLSVTRPRTPLHLTTAFKEGLFQVQD 253

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            +  I   L        +LD CA  GGKT  +   + +  K+ A D+  R+L  L   + 
Sbjct: 254 EATQIVTTLLAPQPGERILDACAGLGGKTGHMGQIMNNQGKIEAWDLDARKLAVLGNEMK 313

Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL +      +MDA D  P      FD VLVDAPC+  G +RR+PD  W R   DI + A
Sbjct: 314 RLGITNVTTKQMDALDIDPAECNTPFDRVLVDAPCTGLGVLRRNPDARWRRTLGDIKRLA 373

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+++L      VKPGGI+V++ CS + +++E V+   L ++     LVP +       
Sbjct: 374 DLQKRILNNLADLVKPGGILVYAVCSCEPEENEGVIDWFL-NNQKSFALVPQSHDLA--- 429

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 S +G  +  P  L        GMDGFFA  +++
Sbjct: 430 ------SQDGIFKTYPHPL--------GMDGFFAATMKK 454


>gi|240137127|ref|YP_002961596.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Methylobacterium
           extorquens AM1]
 gi|240007093|gb|ACS38319.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Methylobacterium
           extorquens AM1]
          Length = 454

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 167/441 (37%), Positives = 243/441 (55%), Gaps = 11/441 (2%)

Query: 4   GMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           G+ AR  +   ++ ++   + ++L   L           L   +  L RAI   + R L 
Sbjct: 19  GLAARHAAREAVATLLGPARGLALEDALAQAAR---GAGLDAGEAALARAIATASFRRLG 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I A L   L   LP  +  L  LL    AQIL L VAD+A VDL+V  AK D + +H  
Sbjct: 76  FIKAALAARLRDGLPEDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHLV 135

Query: 122 KLVNSILRRVSREKIELLQRIAG--ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN++LRR++RE+  +  + +       P+W   R +  YG++    I+ A +    +D
Sbjct: 136 PLVNAVLRRIARERDAIRAQESDPLAHNTPDWLARRWQAAYGEDAARRIAVAHLEGAAVD 195

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LT+  D + WA +L  + L  G +RL E+ +++  LPG+AEG WWVQDA+A +PV+L   
Sbjct: 196 LTIPHDPDIWAERLGGIRLDLGSVRLAEVRQAVAELPGYAEGAWWVQDAAAGLPVRLLAP 255

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           +    V+DLCAAPGGKTAQ+  +GA VTA+D S  RLE+L  NL+RL L AE +   DA 
Sbjct: 256 VPGERVVDLCAAPGGKTAQMAAAGAAVTAVDRSAARLERLGRNLERLGLSAEVV-TADAL 314

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPCS+TGTIRRHPDV+WT+   D+++ A  QR+LL +     +PGG
Sbjct: 315 ALPEDAPFDAVLLDAPCSATGTIRRHPDVVWTKSEADVIRLAGLQRRLLDKAARLTRPGG 374

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CSL+ ++    V   L  +P   E + +     +    A  +   G +R  P  
Sbjct: 375 RLVYCTCSLEPEEGSAQVAAFLARNP-DFERIAITPD--RLSGHAELIDASGDLRTLPSH 431

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           +    G + G+DGFFA  LRR
Sbjct: 432 VVGGIGRAGGLDGFFASLLRR 452


>gi|86139371|ref|ZP_01057940.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. MED193]
 gi|85823874|gb|EAQ44080.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. MED193]
          Length = 420

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 146/440 (33%), Positives = 222/440 (50%), Gaps = 22/440 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G  AR  + +LL  V+ +      LL   Y   A   L+  D+   + +   TLR L
Sbjct: 1   MSDGTQARRTAIYLLDQVLGEGR----LLAECYAAGALERLTPEDRARAQRLTLQTLRSL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D VL   L  + P    ++Q +LR+   ++ +   A + VV+  V    + + +   
Sbjct: 57  ERADRVLQKHLKKATP---LTVQNVLRLGTVELCH-GAAAHGVVNDMVAIISKHRRHGKL 112

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN++LR+V+ +      ++  +  +P+W ++ L   +G E +L I  A      +D+
Sbjct: 113 KGLVNAVLRKVAEQGQAEWAKL-RVPRLPKWLRKPLVEAWGAEAMLEIEAAHYEGAPLDI 171

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T K   +     L  V LPTG  RLK     + +L G+  G WWVQDA+A++P Q+    
Sbjct: 172 TGKRGAD--LTALGGVALPTGSHRLKNA-GQVSALAGYEVGDWWVQDAAAALPAQMLQAQ 228

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +   +LDLCAAPGGKT Q+  SGA VTA+D S  R+E+L+ NL R  L A+ ++      
Sbjct: 229 SGERILDLCAAPGGKTMQMAASGASVTAVDTSASRMERLQENLTRTGLAADLVV---GDA 285

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              +  FDAVL+DAPCS+TGTIRRHPD+   +D          Q ++L    S VKPGG 
Sbjct: 286 LEQRGQFDAVLLDAPCSATGTIRRHPDLPHAKDGSAFGALIELQAQMLAHAWSLVKPGGR 345

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VF  CSL   + E  V++ L   P       + +A       +  ++ EG +R+ PD  
Sbjct: 346 MVFCTCSLLPDEGECQVEEALEMFPDMSVDRDVLAALGVD---SAWITEEGGLRLRPDYW 402

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +      GMDGF+   LR+
Sbjct: 403 AE----QGGMDGFYMALLRK 418


>gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187]
 gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187]
          Length = 433

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 202/456 (44%), Gaps = 41/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R  ++ ++  V+ +  SL+  L +     A +L++ +D+ L++ I   TLR+L R++
Sbjct: 1   MKIRATAAKVIFQVVEQGQSLSSALPV-----AQQLIAAKDRALLQEICYGTLRWLNRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + D +L   L  K  SL  L+   + Q+ Y  +  +AV+   V  A        F KL+
Sbjct: 56  FIADQLLDRQLKGKHRSLHYLILAGLYQLFYTRIPPHAVLAETVN-ASGLLNGDSFRKLI 114

Query: 125 NSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI-SPLYID 179
           N +LR   R++        +        P W  ++++       V  +       P+++ 
Sbjct: 115 NGVLRNAQRQQEELLQAADKNEPTRFSYPRWLLKKIKQSCQYGYVSVLQAGNEYPPMWLR 174

Query: 180 LTV-KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           + + K   + +  +L AV +            L E    +  LPGFA+G   VQDA+A  
Sbjct: 175 VNLSKQSRDEYQRQLAAVEIQSTPHASCESALLLEKACDVSKLPGFADGACSVQDAAAQH 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLY 289
              L     N  +LD CAAPGGKTA ++       ++ A+D    RL ++  NL R+ L 
Sbjct: 235 AAWLLDPQPNELILDACAAPGGKTAHILERQPALKQLVAVDSDANRLSRVAENLQRIQLE 294

Query: 290 AEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A  I         +     FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q  +
Sbjct: 295 ATLINGDASHPEQWWQGPQFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAELAHLQHDI 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG ++++ CS+   ++   ++  L  +   +  VPLN             
Sbjct: 355 LNAMWQQLKPGGTLLYATCSILSDENSSQIKSFLERTADAIH-VPLNEKDTALQP----- 408

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                 +I P            MDGFF   L + + 
Sbjct: 409 ----GWQIHPG--------EQHMDGFFYAKLTKQVT 432


>gi|77917857|ref|YP_355672.1| Sun protein [Pelobacter carbinolicus DSM 2380]
 gi|77543940|gb|ABA87502.1| Sun protein [Pelobacter carbinolicus DSM 2380]
          Length = 451

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 188/462 (40%), Gaps = 40/462 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++  +L  V          LD      A   +  RD+ L   +V   LR+  R+D  
Sbjct: 6   PRHIAFDILDKV-HNGAFADLALDSALQ--ALPDMDVRDRALATELVYGVLRYRGRLDFA 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  +    L + + ++  LLR+   QIL LD + ++A V   VE A+R K  +     +N
Sbjct: 63  LQQLCRKPLAKVEPAVLNLLRLGCYQILQLDRIPNHAAVFETVELARRLKL-QRATGFIN 121

Query: 126 SILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            ILR              + + L  +  +  +P W   R  + +G E   A++ A + P 
Sbjct: 122 GILRGLVRQAAQLPWPDRQRDPLDYLEHVLSLPRWLAARWLDEFGAEEACALAQAMLKPA 181

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQDA 228
              +         E     LNA        R       I       L G  EG++ +QD 
Sbjct: 182 PYAIRTNTLKIQREALLATLNASDCDAVPTRFVPEGIYIRQGETRHLSGHTEGIFQLQDQ 241

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           ++ +   L        +LD CAAPGGKT  +     + A++ ALD+  +R++ +    +R
Sbjct: 242 ASMLISHLLNPQPGERILDACAAPGGKTTHMAALTDNRARIVALDLHPQRVDLITRGANR 301

Query: 286 LHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L     +    D            FD +LVDAPCS  G +RR+P++ W R   D+ + A 
Sbjct: 302 LGCQGIEGHAWDLTGVPDFLEPASFDRILVDAPCSGLGVLRRNPEIRWRRKPADLKEMAR 361

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR +L      ++PGG +V+S C+   ++++ V++      P   E    +        
Sbjct: 362 IQRAILGNVAPLLRPGGRLVYSLCTFSPEETQNVIRAFTNEHP---EFTRCDLRNETPAA 418

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                  +G +R  P            MD FFAVA  +  QP
Sbjct: 419 WHALFDRQGALRTLPQH-------HDDMDAFFAVAFEK--QP 451


>gi|254486947|ref|ZP_05100152.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101]
 gi|214043816|gb|EEB84454.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101]
          Length = 423

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 143/441 (32%), Positives = 225/441 (51%), Gaps = 21/441 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +G+ AR  + +LL  ++ +      L+           L   D+   + +   TLR 
Sbjct: 1   MSDTGVQARRSAVYLLDMILGEER----LMSELLAAGVLDKLPPDDRARAQRLALDTLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           + R D +L   L    P    +++  LRV   ++     A + VV+  VE     K+  H
Sbjct: 57  MERADRLLQKHLSKYPP---LTVRNALRVGTVELCQGG-AAHGVVNAMVELVATHKKLGH 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              L N++LR+++ E  E    +     +P+W +  L   +G E +  I  A  +   +D
Sbjct: 113 LKGLTNAVLRKIAAEGPEAWAAL-RSPRLPKWLRGPLVEAWGAEAITGIEAAHFAGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LT K D    A  +   +LPTG +R+ +    + ++PGFAEG WWVQDA+A++PV++   
Sbjct: 172 LTAKGDPAVLAEAVGGSVLPTGSVRVMDA-GQVTAMPGFAEGDWWVQDAAAALPVKILAP 230

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
               +VLDLCAAPGGKT QL  +GA+VTA+D SK R+++++ NL R+HL A+ ++     
Sbjct: 231 QKGEAVLDLCAAPGGKTMQLAAAGAQVTAVDSSKPRMQRVKENLARVHLPAKTVV---MD 287

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               +  F A+L+DAPCS+TGTIRRHPD+   +D  +  +    Q +L+    S + PGG
Sbjct: 288 ARAFEGKFSAILLDAPCSATGTIRRHPDLPHAKDGSEFGELIELQAELIDHAWSLLNPGG 347

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +VF  CSL   + E  V + L         V  ++     ID    +S EG +R+ PD 
Sbjct: 348 RLVFCTCSLLPDEGEVQVDEALERHSDMS--VDQSALSVPGID-PSWISSEGGLRLRPDY 404

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
              +     GMDGF+   LR+
Sbjct: 405 WADL----GGMDGFYIACLRK 421


>gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
           3_2_56FAA]
 gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
           3_2_56FAA]
          Length = 448

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 105/459 (22%), Positives = 191/459 (41%), Gaps = 39/459 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++  +L  + +K       +        F    ++D+     +   TL     ID 
Sbjct: 3   NPRELALDVLMKIDKKEELSHIAIGETLEKYQFS--EKKDRAFFTRLCQGTLERRLTIDY 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           V+D    +   + K  ++ LLR+   QIL++D + D A  +  V+ AK+ +     +  V
Sbjct: 61  VIDLYSKTKERKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKK-RGFSKLSGFV 119

Query: 125 NSILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACISP 175
           N +LR +SR+K E+                  +PEW        Y +E    I  + + P
Sbjct: 120 NGVLRTISRQKQEIPFPDRNKDFVKYLSVACSMPEWIIRHFLRSYSEEETETIVSSFLEP 179

Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQ 226
               ++        E     L          +L          + +  L  F EG + VQ
Sbjct: 180 KKTTVSWMESSGSREELIASLEKDGAKVEDGKLLPEALRISHYDFLRRLTSFREGRFIVQ 239

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D S+ +  +         +LD+C+APGGK       +    +V A D+++ + E L+ N+
Sbjct: 240 DESSMLAGKAADPKEGQKILDMCSAPGGKALYAADKLHGTGQVLARDLTEYKEELLKENI 299

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +R+          DA     +  +  D VL D PCS  G + +  D+ +  +   +    
Sbjct: 300 ERVGFENIRTQIWDARIPDERLAESMDVVLCDVPCSGLGIMGKKQDIKYNLEESALEDLV 359

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR++L   +++VKPGG ++FS C+++ +++EE  + +   +    E   L     +++
Sbjct: 360 KLQREILKTALTYVKPGGSLLFSTCTINPKENEENFRWLAGQTG--YEPEDLTPFLPETL 417

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           D+  A   EG+I++ P +           DGFF   LRR
Sbjct: 418 DIKTA--KEGYIQLLPGI--------HPCDGFFIGKLRR 446


>gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae]
          Length = 426

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 111/456 (24%), Positives = 208/456 (45%), Gaps = 47/456 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R + + +++ V+ ++ SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MNKKYNLRSICAQVIAQVIDQKQSLSTVLPEW-----QKNISDKDKSLLQELSFGVLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P ++  +  ++   L  K+  +  L+ V + Q+ +  +  +A +   V+ A   K  +  
Sbjct: 56  PLLEWFIQQLITKPLKGKQRIIHYLIMVGIYQLRFTRIPPHASLAETVDGANALKLPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N++    +R  +   E         + P+W  E+++  Y  +    +  +    P+
Sbjct: 115 KGLINAVLRQFQRQEQILNEKANNNENNYLHPKWLLEKIQQVYPAQWKEILEANNQKPPM 174

Query: 177 YIDLTV-KFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           ++ +         +   L            +      + P +I  LPGF +G   +QD S
Sbjct: 175 WLRVNQLYHSTNDYLMLLQQAGIEASLSNDSKFAIKLQKPCAINKLPGFDQGWVTIQDLS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287
           A   V+L    N   +LDLCAAPGGKT  ++     A V A+D+ + R+++++ NL+R+ 
Sbjct: 235 AQRCVELLAPKNGEYILDLCAAPGGKTTYILELAPKADVLAVDIDQLRIKRIQENLNRVK 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+A  +I  D      +     FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 295 LHA-RVIVGDGRKPLEWISGAKFDRILLDAPCSATGVIRRHPDIKWLRKPIDIPQLVKLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            K+L     ++K  G +V++ CS+   +++E ++K L   P                + +
Sbjct: 354 YKILEAIWPYLKTNGTLVYATCSILPDENKEQIKKFLFHHP----------------EAS 397

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  + E   +I P           G DGFF  +L +
Sbjct: 398 LNNNMELGQQILP--------TQRGGDGFFYASLIK 425


>gi|110678030|ref|YP_681037.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114]
 gi|109454146|gb|ABG30351.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114]
          Length = 423

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 139/441 (31%), Positives = 216/441 (48%), Gaps = 21/441 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +G+ AR  + +LL  ++ +      L+           L   D+     +   TLR 
Sbjct: 1   MADTGLPARRSAVYLLDQILGEGR----LMSELLTAGTLDKLEPEDRARAARLAQDTLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L R D +L   L    P    +++  LRV   ++     A + VV+  VE   R K   H
Sbjct: 57  LERADRILQKHLSKYPP---LTVRNALRVGAVELC-TGTAAHGVVNAMVELVSRHKHYSH 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              L N++LR+V+ +       +     +P+W +  L   +G + +  +  A  +   +D
Sbjct: 113 LKGLTNAVLRKVAADGPAAWDAL-RAPRLPKWLRGPLVEAWGADAMARMEIAHFAGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LT K D    A      +LPTG +R++     + ++PGF++G WWVQDA+A++PV++   
Sbjct: 172 LTAKSDASAIAALTGGTVLPTGSVRVENA-GQVSAMPGFSDGTWWVQDAAAALPVRILAP 230

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
               +VLDLCAAPGGKT QL  +GA+VTA+D S  R+ ++  NL R  L AE +++    
Sbjct: 231 QPGETVLDLCAAPGGKTMQLAAAGARVTAVDDSSVRMGRVAENLARTGLKAEVLVQ---D 287

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPCS+TGTIRRHPD+   +D  +       Q +L+      VKPGG
Sbjct: 288 ARATSGTFDAVLLDAPCSATGTIRRHPDLPHAKDGSEFGDLIAMQSELIDHAWDRVKPGG 347

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +VF  CSL   + E  V + L            ++     +D A   + EG +R+ PD 
Sbjct: 348 RLVFCTCSLLPDEGEVQVDEALERHEDM--RTDADALGVPGVDPAWR-TSEGGLRLRPDY 404

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
              +     G+DGF+   LR+
Sbjct: 405 WSDL----GGLDGFYIAVLRK 421


>gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH603]
 gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-ST196]
 gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH621]
 gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH621]
 gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           BDRD-ST196]
 gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH603]
          Length = 415

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 106/428 (24%), Positives = 189/428 (44%), Gaps = 37/428 (8%)

Query: 37  AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96
               + ++D  L+  +V  T++    +D  L   L   +      ++ LLR+S+ Q+LYL
Sbjct: 3   EKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLRKKVE---AWVRVLLRLSLYQMLYL 59

Query: 97  D-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISII 148
           D V + A +  AVE AKR + ++  + +VN +LR + RE           ++R+A  +  
Sbjct: 60  DRVPERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLEEIENPVERLAIATSH 118

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAVMLPT 200
           P W  +   + YG E    + +  + P      V  D  T    +         A     
Sbjct: 119 PMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAVALLADEGIEAKRGEL 178

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
               ++    ++     F +G   +QD S+ +  +        +VLD CAAPGGKT  + 
Sbjct: 179 SEDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIA 238

Query: 261 VS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDA 314
                  KV +LD+   ++  +     RL L   + + +D     ++   + FD +LVDA
Sbjct: 239 ERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENVETMALDARKVQEHFANESFDKILVDA 298

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K ++E
Sbjct: 299 PCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 358

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           +V+++ L+  P       +     + ++       EG +RI P             DGF+
Sbjct: 359 QVIKQFLQEHPEFEWDTTIKDRMPEKLN---PYIDEGQVRILPHYFA--------TDGFY 407

Query: 435 AVALRRLI 442
              LR+ +
Sbjct: 408 IACLRKKV 415


>gi|332653342|ref|ZP_08419087.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
           bacterium D16]
 gi|332518488|gb|EGJ48091.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
           bacterium D16]
          Length = 445

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 101/462 (21%), Positives = 181/462 (39%), Gaps = 42/462 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR  +   L+   R+       L  +        L  R+  L   +    ++    +D
Sbjct: 1   MDAREAALLTLNTCQRQGGWSDGALKKQLAAG---GLEGREAALATQLCFGVVQNEMLLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
             +       L R +  + Q LR+ + Q+L+L  +   A V+ +VE  +   +N     +
Sbjct: 58  FYISKFSNIPLRRMESKVVQALRLGLYQMLFLTKIPQSAAVNCSVELTRTHCKNPRAPGM 117

Query: 124 VNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           VN+ILR          +  + +L +  + +   P W  E L    G E       A  S 
Sbjct: 118 VNAILRSLQRNLNQLPTIPQNDLAEYFSILYSHPVWLVEELLPLLGSEGTAEFLQANNSQ 177

Query: 176 LYIDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
             +   V             +                 +     ++  L  + +G+++VQ
Sbjct: 178 PPMTAMVNTTKAAAQEATELLAEQGVEVTPHPWLENCLILNKTGNLERLDAYGQGLFYVQ 237

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +     G    + VLD+CAAPGGK+      + +  +V + D+   + + ++   
Sbjct: 238 DPASRLMALASGAAPGMRVLDMCAAPGGKSFAAAIQMDNQGEVISCDLHPHKKKLIQAGA 297

Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           DRL L     +  D      +    FD VLVDAPCS  G IR+ PD+ + +D   +    
Sbjct: 298 DRLGLSIIKPMTADGKVRREEWVSAFDLVLVDAPCSGLGVIRKKPDIRY-KDPKPLEDLP 356

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+ +L     +VK GG++++S C++  +++ EVV   L   P  V            +
Sbjct: 357 QVQQAILENAAGYVKAGGVLMYSTCTILPRENGEVVSAFLEKHPEFVR-------EACEL 409

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             A      G I + P +           DGFF   LR++ +
Sbjct: 410 PGAAGRVEAGEITLWPQV--------HQTDGFFICKLRKVGE 443


>gi|254784303|ref|YP_003071731.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
           turnerae T7901]
 gi|237683392|gb|ACR10656.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
           turnerae T7901]
          Length = 433

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 119/452 (26%), Positives = 201/452 (44%), Gaps = 42/452 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR+ ++  L  V+ K  SL    D          L +RD+ L + +   TLR+  R++A+
Sbjct: 4   ARVQAARTLGEVLAKHCSLNKPFDT-----GINKLDERDRGLFQELCYGTLRWYHRLEAI 58

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +L   L  K   +  LL + + Q+ YL V D+A +   V  A R  +    + L+N 
Sbjct: 59  AGELLQKPLRNKDQDVYALLLIGLYQLEYLRVPDHAAISETVN-ASRALKKPWASGLLNG 117

Query: 127 ILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            LR   R++ ++ ++I+G        P W   RL+  +G  +   I  A      + L V
Sbjct: 118 ALRSFQRDREQIFKKISGKPQASFSHPNWLVARLQQSWG-AQASRILHANNQQPPVCLRV 176

Query: 183 K---FDIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIP 233
                  + +  KL    L    +              I  LPGF+EG+  VQD +A + 
Sbjct: 177 NLKRQSRDEYLVKLQQAGLQAQPLASSPSAVRLLSPLDIQQLPGFSEGLVSVQDEAAQLA 236

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA 290
             L        VLD C APGGK+  ++ +     ++  LD  + R+ ++  NL RL L  
Sbjct: 237 AYLLALEPGQRVLDACCAPGGKSCHILEAEPALTELVCLDSEQDRMARVEENLARLQLSG 296

Query: 291 EDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             +   D     +   + FD VL+D PCS+TG IRRHPD+   R  DD+ K +  Q+ +L
Sbjct: 297 ATLTTGDASTCQWWNNQPFDRVLLDVPCSATGVIRRHPDIKLLRREDDLAKLSALQQAIL 356

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG++V++ CS+  +++ E++ + +       EL P+++ +           
Sbjct: 357 NNVWQMLKPGGLLVYATCSVLPEENSELITQFVTDHK-DAELAPMDADWGIEQPAGR--- 412

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                ++ P +         G DGF+   L +
Sbjct: 413 -----QLLPQL--------EGPDGFYYARLIK 431


>gi|299821751|ref|ZP_07053639.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
           20601]
 gi|299817416|gb|EFI84652.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
           20601]
          Length = 445

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 208/462 (45%), Gaps = 43/462 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R  +  +L  + + +     L++     +    L   D+ L+  +V  TL+  
Sbjct: 1   MKKTQSVREAALEILLKIEKNQSFSHLLINDALKKTKLEAL---DRNLLTELVYGTLQRR 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L          + +LLR+SV Q++YLD V ++A++  A E AK+ + ++ 
Sbjct: 58  LTLDYYLQTFLKKQPED---WVLELLRMSVYQLVYLDKVPEHAILHEAGEIAKQ-RSHQG 113

Query: 120 FAKLVNSILRRVSREKIE-------LLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR + R+ I         ++++A  + +P W   R E  +G  ++  I  A 
Sbjct: 114 VTKFVNGVLRNLIRQGIPAITDIADPVEQVAIETSLPLWLARRWEKQFGLTQLREIGLAF 173

Query: 173 ISPLYIDLTVK---FDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P +  + V       E  A +L          P     L     ++     + +G+  
Sbjct: 174 LVPPHQTIRVNRLEQPREQTAKELGQIDIETTPSPYLDEALIVEKGTVAQTRLYQKGIIS 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +P         ++VLD CAAPGGKT      +     V ALD+ +++ + +  
Sbjct: 234 IQDESSMLPAYALQLEEQMTVLDACAAPGGKTTHIAEKMNGTGIVYALDIHEKKTKLIEQ 293

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             DRL L        DA         ++FD +LVDAPCS  G +RR PD+ +++  +DI 
Sbjct: 294 AADRLGLMNIRTKAYDARKASEVFEPEMFDRILVDAPCSGFGVLRRKPDIKYSKTENDIQ 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q ++L +    +K  GI+V+S C++DK+++  V++  L + P             
Sbjct: 354 RLAAIQLEILEEVSQLLKENGILVYSTCTIDKEENATVLKTFLANHPEF------QLERV 407

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +       L  E ++ + P         + G DGFF  ++R+
Sbjct: 408 QVPKAVAELLTEDYLELLP--------TAIGSDGFFVSSIRK 441


>gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           DSM 2048]
 gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           DSM 2048]
          Length = 415

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 106/428 (24%), Positives = 190/428 (44%), Gaps = 37/428 (8%)

Query: 37  AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96
               + ++D  L+  +V  T++    +D  L   L   +      ++ LLR+S+ Q+LYL
Sbjct: 3   EKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLRKKVE---AWVRVLLRLSLYQMLYL 59

Query: 97  D-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISII 148
           D V + A +  AVE AKR + ++  + +VN +LR + RE           ++R+A  +  
Sbjct: 60  DRVPERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLEEIENPVERLAIATSH 118

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAVMLPT 200
           P W  +   + YG E    + +  + P      V  D  T    +         A     
Sbjct: 119 PMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAVALLADEGIEAKRGEL 178

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
               ++    ++     F +G   +QD S+ +  +        +VLD CAAPGGKT  + 
Sbjct: 179 SEDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIA 238

Query: 261 VS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDA 314
                  KV +LD+   ++  +     RL L   + + +D     ++   + FD +LVDA
Sbjct: 239 ERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENVETMALDARKVQEHFANESFDKILVDA 298

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS +G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K ++E
Sbjct: 299 PCSGSGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 358

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           +V+++ L+  P       +     + ++       EG +RI P             DGF+
Sbjct: 359 QVIKQFLQEHPEFEWDTTIKDRMPEKLN---PYIDEGQVRILPHYFA--------TDGFY 407

Query: 435 AVALRRLI 442
              LR+ +
Sbjct: 408 IACLRKKV 415


>gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266]
 gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266]
          Length = 444

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 110/459 (23%), Positives = 198/459 (43%), Gaps = 35/459 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR  +   L  +   +     ++           ++++D+ L   +VN  LR   +ID
Sbjct: 1   MNAREAALKALQAIEPGKEKSDRIVHAILDR---ATMNRQDRALTTELVNGVLRMRKKID 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++         +    LQ +LR+ V Q+L+L+ + ++A V   V+ A++ K  R  AKL
Sbjct: 58  FIISKFYHHRFEKAAPVLQNILRLGVYQLLFLEKIPEWAAVSECVDLARKYKGER-MAKL 116

Query: 124 VNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR+++ + + + + +         +     PEW   R    YG+E  LA       
Sbjct: 117 VNGVLRKITPDNVVMDEWLKGCEDMERLSVQYSHPEWLINRWNAVYGRETTLASMTYNNH 176

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF-------AEGVWWVQD 227
                  +   ++    +  A    +   + + L  +      F         G   VQ+
Sbjct: 177 APLFGFRINT-LKQTPDEFLADPAHSSFPQERCLTGNFFLSKEFAGFEACLKSGKLTVQN 235

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            +  +   L   +    VLDLCAAPGGK   +   + +   +TA+D S  +LEK R +  
Sbjct: 236 PTQGVACLLLNPVPESRVLDLCAAPGGKATFMAELMQNKGSITAVDRSSEKLEKTRQHAV 295

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            L +     I  DA  + P++   AVL+DAPC+ TG +++  ++ W    + + +    Q
Sbjct: 296 ELGITIIKTICADARSFVPEETPQAVLLDAPCTGTGVLQKRAELRWKLSMEMLQELVTLQ 355

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL    S +   GI++++ CS++ +++E  ++  LR  P         S         
Sbjct: 356 RELLDHAASILPVNGILLYATCSIEPEENELQIEAFLRRHPEFSRDTSCGSL---PEPFR 412

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           M+ + +G I   P  L        G DG FA  LR+  +
Sbjct: 413 MSAAEKGSILTLPGELP-------GFDGGFAQRLRKNAR 444


>gi|312867896|ref|ZP_07728101.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parasanguinis F0405]
 gi|311096651|gb|EFQ54890.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parasanguinis F0405]
          Length = 437

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 196/455 (43%), Gaps = 38/455 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             MNAR     +L  V  +       L+     S    LS +D+  V  +V  T+     
Sbjct: 4   KQMNAREQIVRVLEEVFEQGAYSNIALNQALEHSQ---LSDKDRSFVTEVVYGTVARKIT 60

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ++  L  V+     +    L  LL +S+ Q++YLD + D+A+V+ AV+ AK         
Sbjct: 61  LEWYLAHVIE-DRTKLDPWLYYLLMMSLYQLVYLDRIPDHAIVNEAVQIAK--CRKEGSE 117

Query: 122 KLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           K VN+ILR+                +R +    +P W  + L   YG+ER   I  +   
Sbjct: 118 KFVNAILRKLLREGLPAVDTIKRKNKRYSVEYSLPVWLVKALIEEYGEERACDIFKSLYQ 177

Query: 175 PLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                I +    + E  A  L A         L +          F EG   +QD S+ +
Sbjct: 178 RNKSSIRVIDLDEKEELAQLLEATSSLLASSALVKEQGHFAGHSLFKEGRITIQDESSQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-Y 289
                    +  VLD CAAPGGKT      ++  KVTALD+   +L+ ++ N +RLH+  
Sbjct: 238 VAPALDLQGDEWVLDACAAPGGKTTHLASYLTTGKVTALDLYDHKLKLIQENANRLHVAD 297

Query: 290 AEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                ++DA           FD +LVDAPCS  G IRR PD+ + +++ D V     Q  
Sbjct: 298 KILTKKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKESADFVSLQAIQLA 357

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      V+ GGI+V+S C++  +++ EVV + L+  P   E VPL+            
Sbjct: 358 ILDSVCQSVRKGGIIVYSTCTIMGKENFEVVDQFLKKHPN-FEQVPLDHE-------RKD 409

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +     I ITP++         G DGFF    +R+
Sbjct: 410 ILKNDCILITPELY--------GSDGFFISRFKRI 436


>gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396]
 gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396]
          Length = 447

 Score =  249 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 117/464 (25%), Positives = 198/464 (42%), Gaps = 42/464 (9%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK    ++AR  ++  L  V  +  SLT  +       A   + + D+  ++A+     R
Sbjct: 1   MKRRKTLSARAAAAKTLRAVAEEGRSLTTAMA-----PALEQVEENDRSFLQALCYGACR 55

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK---RDK 115
               ++  L  +L   +  K+  +  LL   + Q+ ++D   +  ++  V   K   +  
Sbjct: 56  HYLTLEHWLGQLLRQPIKAKERDIHFLLLSGLHQLAFMDKPAHVSINETVNVTKELNKLW 115

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
             +    ++ S  RR            +    +P W  ++L   Y   ++  +  A  + 
Sbjct: 116 ATKLVNGVLRSFQRRKDELLARSEADPSLRYAMPRWLLDKLSAAYPH-QLDELLAASNAQ 174

Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGF-AEGVWWV 225
             + L V       E + ++L  V +              E    +  LPGF   G+  V
Sbjct: 175 APLTLRVNLQKVQREDYLNQLREVEVGAHSCEWAETGVQCEHAVDVSRLPGFFDAGLCSV 234

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNL 283
           QD +A +   L     N  VLD C APGGKTA          VTA+DV   R  + R  L
Sbjct: 235 QDEAAQLSASLVDPQPNERVLDACCAPGGKTAALLERTPTISVTAVDVDPERQLRTRDTL 294

Query: 284 DRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL L A+       D   +     FD +L+DAPCS+TG IRRHPD+   R ++DI + A
Sbjct: 295 QRLQLEADVRTADIGDLQQWWDGTPFDRILLDAPCSATGVIRRHPDIKLLRRSEDIPQLA 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q KLL    + +KP G++V++ CS+ K+++E ++++ +  +    E++P+   Y    
Sbjct: 355 ELQLKLLRTLWTTLKPEGLLVYATCSILKEENEHIIERFIADA-TDAEVIPIEGKYGIQS 413

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                      +++ P        V+ G DGFF   LR+   PK
Sbjct: 414 PFG--------VQLLP--------VTGGHDGFFYARLRKQPTPK 441


>gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           pseudomycoides DSM 12442]
 gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           Rock3-17]
 gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           Rock3-17]
 gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           pseudomycoides DSM 12442]
          Length = 415

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/424 (25%), Positives = 188/424 (44%), Gaps = 37/424 (8%)

Query: 41  LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VA 99
           + ++D  L+  IV  T++    +D  L   L   +      ++ LLR+S+ Q+LYLD V 
Sbjct: 7   IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKKVE---AWVKILLRLSLYQMLYLDRVP 63

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWF 152
           + A +  AVE AKR + ++  A +VN +LR + RE           ++R++  +  PEW 
Sbjct: 64  ERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSLEEIQNPVERVSVATSHPEWL 122

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIR 204
            +   + Y  E    + +  + P      V  D  T            + A         
Sbjct: 123 VQEWVSAYDLETAQKMCEVNMVPPVPTARVNVDKITVEEAIALLEREGVQAKRGDLSEDA 182

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-- 262
           ++    ++     F  G   +QD S+ +  +         VLD CAAPGGKT  +     
Sbjct: 183 IQIEKGNVAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLK 242

Query: 263 -GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSS 318
              +VT+LD+   ++  ++    RL L   +   +D     ++   + FD +LVDAPCS 
Sbjct: 243 GTGQVTSLDLHPHKVRLIQQQAKRLELENIETKALDARKVQEHFANESFDKILVDAPCSG 302

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G IRR PD+   ++  D  + +  Q  +L +    +K GG +V+S C+++K ++E+V++
Sbjct: 303 FGVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPLLKAGGRLVYSTCTIEKIENEQVIE 362

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           + L+  P   E     +   +  +       EG ++I P             DGF+   L
Sbjct: 363 QFLQEHP---EFEWDTTMKERMPEKLRPYINEGQVQILPHYFA--------TDGFYIACL 411

Query: 439 RRLI 442
           R+ +
Sbjct: 412 RKKV 415


>gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831]
 gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 448

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/463 (23%), Positives = 206/463 (44%), Gaps = 38/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R     +L  + +       LL+ E      R L+++D+ L+  +V  +L+  
Sbjct: 1   MK--YQLRNTMLDILIRIEKDHGFSNLLLNHELK---QRQLNEKDERLLTEVVYGSLQHQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   + S   +    +Q LLR+S  Q++YL+ V D+AV+  +VE AK+ + ++ 
Sbjct: 56  MTLDYYLSKFVKSK-KKLDIWVQSLLRMSFYQMIYLEKVPDHAVIHESVEIAKQ-RGHKG 113

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            +  VN +LR + R+         + ++RIA  +  PEW  +R    YG E    +    
Sbjct: 114 ISSFVNGVLRSLQRQGVPELTEIKDPIERIAIETSHPEWLVKRWSEMYGMETTANMCRNN 173

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGFAEGVWW 224
           +    + + ++      E    +L    +           +     +I       +G   
Sbjct: 174 LEHHPLSIRIQPLRTSREDVMEELKQSGIECRASIFSSQGIIIEKGNIFRTNLLKDGKIT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S+ +  ++      ++VLD C+APGGK       ++    + A D+  ++++ +  
Sbjct: 234 IQDQSSMLVGEMLAVEPEMNVLDSCSAPGGKVTHVAEKMLDKGTIHAFDLHAKKIKLIDE 293

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
               L L +    + DA     K     FD ++VDAPCS  G I   P++ + +  +DI 
Sbjct: 294 KATTLQLSSILAQKGDARKLADKYEKESFDRIVVDAPCSGLGVINGKPEIKYEKSEEDIQ 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q+ +L + I  +K  G++++S C++D +++ +VV++VL++       +       
Sbjct: 354 RLAKIQQDILNEVIPLLKENGLLIYSTCTVDTEENNQVVRQVLKNHQDISIDLSFRDELP 413

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             I  A   S EG +++ P             DGFF   L+++
Sbjct: 414 VEIQEAPGWSEEG-LQLFPQDF--------HTDGFFLTRLKKI 447


>gi|322386005|ref|ZP_08059645.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100]
 gi|321269988|gb|EFX52908.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100]
          Length = 440

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 123/451 (27%), Positives = 194/451 (43%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V  +       L+     SA   LS  D+ LV  +V  T+     ++  
Sbjct: 10  ARELALEILEEVFEEGAYSNIALNKALKQSA---LSSADKSLVTELVYGTVARKISLEWQ 66

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +S+ Q+LYLD +  +AVV+ AVE AK     R   K VN
Sbjct: 67  LAHFVE-DRDKLDAWLYILLELSLYQMLYLDKIPQHAVVNEAVEIAK--GRKRGSEKYVN 123

Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--L 176
           +ILR++ R+            +R +    +P W  + L + YG+ER  AI  +       
Sbjct: 124 AILRKIERDGAADPITIKRKNKRYSVQYSLPVWLVKVLIDEYGEERAEAIFASLFERNKA 183

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     LNA         L +          F +G+  +QD S+ +    
Sbjct: 184 SIRVTDVARKEEIKAVLNADDSLLAPSALVKKQGHFAGHEFFEKGLITIQDESSQLVAPT 243

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD C+APGGK   +   ++  ++TALD+   +L  +R N +RL L      
Sbjct: 244 LQIEGYEQILDACSAPGGKAVHMASYLTSGQITALDLYVHKLNLIRQNAERLGLADKITT 303

Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L  
Sbjct: 304 KKLDATKVFETFGPNAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 363

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++   ++ EVV+K L   P        N    +       +  +
Sbjct: 364 VCQSLRKGGIITYSTCTIVSAENFEVVKKFLERHP--------NFEQVRLEHEREDIVKD 415

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 416 GCILITPELY--------GSDGFFISQFRKI 438


>gi|310819442|ref|YP_003951800.1| ribosomal RNA small subunit methyltransferase b [Stigmatella
           aurantiaca DW4/3-1]
 gi|309392514|gb|ADO69973.1| Ribosomal RNA small subunit methyltransferase B [Stigmatella
           aurantiaca DW4/3-1]
          Length = 438

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 190/456 (41%), Gaps = 38/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR ++  +L+ V      L  +LD    ++  R    RD  L   +   T R    +D
Sbjct: 1   MSARTLAIQVLARVRATDAYLNVVLDTALSEAPPR--DARDTALATELAYGTTRRQLALD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +       L   +  +   LR+   Q+ Y  V   A V   V QA +D      A  V
Sbjct: 59  YAITRFADRKLDAMEDRVLAALRIGAYQLFYTRVPARAAVAETV-QALKDLGVGRAAGFV 117

Query: 125 NSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N+ILR+           + ++ + ++     P+W  ER    +G+ER  A+  A      
Sbjct: 118 NAILRKLAALPGAPLPPEDDVAEHLSVRESHPKWLVERWLRQFGRERAEAMLVADNQTPP 177

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + +         E    +   V L      +            +  + G++EG+W VQD 
Sbjct: 178 VVVRTNTAKVTREALLAQFREVGLEVQPTPVSPVGIVLPSLGRLEDVYGYSEGLWQVQDE 237

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +A +         N   LD+CAAPGGK         +V A+D+   +L K+     RL L
Sbjct: 238 AAQLVGVYAAIPENARTLDVCAAPGGKACHQAE-THEVVAMDLHANKLPKIVSEAKRLGL 296

Query: 289 YAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            +              +    F AVLVDAPCS  GT+RRHP++ + R   D+ + A  QR
Sbjct: 297 LSRLRAVAHDATKPYDEALGEFQAVLVDAPCSGLGTLRRHPELRYRRGEADLGRLATLQR 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      V PGG+++++ C+L+ Q+ ++ V   LRS P      P+ S     ++ A 
Sbjct: 357 RILENCQEVVPPGGLLIYAVCTLEPQEGQDQVDMFLRSHPEWTAEPPVLSGVKLPMNQA- 415

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 W+R  P           G DGFFA  LR+L
Sbjct: 416 ------WLRTLPG--------PEGWDGFFAARLRKL 437


>gi|294084660|ref|YP_003551418.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664233|gb|ADE39334.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 446

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 226/434 (52%), Gaps = 13/434 (2%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           + +R +   LL  V      L   L           L  RD+  VR +    LR   +I+
Sbjct: 22  LKSRQICYELLCAVEA-GSQLDHALK---AQEDISKLDDRDRRFVRLLATTCLRRRGQIE 77

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            V+  ++       + +   +L +   Q+L L    +A VD  VE  ++   +R    + 
Sbjct: 78  KVIAPMISRRPFGAQANANLILLMGAVQLLILKTGAHAAVDSTVELMRQSGFDR-LCGMA 136

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           N+++RR++RE     +    I  +P+W  +     +G++    +++  ++P  +D++ K 
Sbjct: 137 NAVMRRLTREGDTRFETTTPIDNLPDWLLQSWNEHWGQDATSKLAEIAMNPPPLDISAKA 196

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           + E  A  L   ++    IR +        L GFA+G WWVQDA+A++P +L G + +  
Sbjct: 197 NPEAMASTLEGTLIDNYTIR-RAFDGDPSRLAGFADGEWWVQDAAAALPARLLGDVKSKD 255

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           V+DLCAAPGGKTAQLI +GA VTA+D  ++R+++LR NL RL + A  + ++D   + P 
Sbjct: 256 VIDLCAAPGGKTAQLIAAGATVTAIDSGRKRIDRLRRNLGRLGMKA-SLKQVDGRQFVPD 314

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
              DA+L+DAPCS+TGT+RR PD+L  R  +DI      Q +L    + ++K GG +V++
Sbjct: 315 MPVDAILLDAPCSATGTLRRRPDILGRRQPEDIESLQNLQWELATTALGWLKAGGQLVYA 374

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CSL  ++ EE++  ++ +    V + P+          A +L+ EG +RI P   + I 
Sbjct: 375 TCSLQPEEGEEMISAIIDAGEDKVVIDPITPDQAGI--FARSLTKEGTLRILPHQYDDI- 431

Query: 425 GVSSGMDGFFAVAL 438
               G+DGFFA  L
Sbjct: 432 ---GGVDGFFAARL 442


>gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           Rock1-4]
 gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
           Rock1-4]
          Length = 415

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/424 (25%), Positives = 188/424 (44%), Gaps = 37/424 (8%)

Query: 41  LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VA 99
           + ++D  L+  IV  T++    +D  L   L   +      ++ LLR+S+ Q+LYLD V 
Sbjct: 7   IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKKVE---AWVKILLRLSLYQMLYLDRVP 63

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWF 152
           + A +  AVE AKR + ++  A +VN +LR + RE           ++R++  +  PEW 
Sbjct: 64  ERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSLEEIQNPVERVSVATSHPEWL 122

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIR 204
            +   + Y  E    + +  + P      V  D  T            + A         
Sbjct: 123 VQEWVSAYDLETAQKMCEVNMVPPVPTARVNVDKITVEEAIALLEREGVQANRGDLSEDA 182

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-- 262
           ++    ++     F  G   +QD S+ +  +         VLD CAAPGGKT  +     
Sbjct: 183 IQIEKGNVAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLK 242

Query: 263 -GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSS 318
              +VT+LD+   ++  ++    RL L   +   +D     ++   + FD +LVDAPCS 
Sbjct: 243 GTGQVTSLDLHPHKVRLIQQQAKRLELENIETKALDARKVQEHFANESFDKILVDAPCSG 302

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G IRR PD+   ++  D  + +  Q  +L +    +K GG +V+S C+++K ++E+V++
Sbjct: 303 FGVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPLLKAGGRLVYSTCTIEKIENEQVIE 362

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           + L+  P   E     +   +  +       EG ++I P             DGF+   L
Sbjct: 363 QFLQEHP---EFEWDTTMKERMPEKLRPYINEGQVQILPHYFA--------TDGFYIACL 411

Query: 439 RRLI 442
           R+ +
Sbjct: 412 RKKV 415


>gi|322391001|ref|ZP_08064506.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
 gi|321142305|gb|EFX37778.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
          Length = 437

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 129/455 (28%), Positives = 199/455 (43%), Gaps = 38/455 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             MNAR     +L  V  +       L+     S    LS +D+  V  +V  T+     
Sbjct: 4   KQMNAREQIVRVLEEVFEQGAYSNIALNQALEHSQ---LSDKDRSFVTEVVYGTVARKIT 60

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ++  L  V+     +    L  LL +S+ Q++YLD + D+A+V+ AV  AKR K      
Sbjct: 61  LEWYLAHVIE-DRTKLDPWLYYLLMMSLYQLVYLDRIPDHAIVNEAVRIAKRRK--EGSE 117

Query: 122 KLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           K VN+ILR+                +R +    +P W  + L   YG+ER  AI  +   
Sbjct: 118 KFVNAILRKLLREGLPAIDTIKRKNKRYSVEYSLPVWLVKALIEEYGEERACAIFKSLYQ 177

Query: 175 PLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                I +    + E  A    A         L +      +   F EG   +QD S+ +
Sbjct: 178 RNKSSIRVIDLDEKEELAQLFEATSSLLAPSALVKEQGHFAAHSLFKEGRITIQDESSQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-Y 289
                    +  VLD CAAPGGKT      ++  KVTALD+   +L+ ++ N +RLH+  
Sbjct: 238 VAPALDLQGDEWVLDACAAPGGKTTHLASYLTTGKVTALDLYDHKLKLIQENANRLHVAD 297

Query: 290 AEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                ++DA           FD +LVDAPCS  G IRR PD+ + +++ D V     Q  
Sbjct: 298 KILTKKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKESADFVSLQAIQLA 357

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      V+ GGI+V+S C++  +++ EVV + L++ P   E VPL+            
Sbjct: 358 ILDSVCQSVRKGGIIVYSTCTIMGKENFEVVDQFLKNHPN-FEQVPLDHE-------RKD 409

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +     I ITP++         G DGFF    +R+
Sbjct: 410 ILKNDCILITPELY--------GSDGFFISRFKRI 436


>gi|295696042|ref|YP_003589280.1| sun protein [Bacillus tusciae DSM 2912]
 gi|295411644|gb|ADG06136.1| sun protein [Bacillus tusciae DSM 2912]
          Length = 486

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 190/462 (41%), Gaps = 39/462 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V  +R      L             +RD  L   IV  TLR+   +D 
Sbjct: 27  PARRGAFEVLLLVEERRAYSHIALRQVLNR---LGADRRDSALATEIVQGTLRWQRWLDE 83

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++      + R    ++  LR++V Q+  L   A +AVV+ AVE  K  +     A  V
Sbjct: 84  QINAKSRIPIARLDAVVRVTLRMAVYQLYKLRHCAPHAVVNDAVELVKGTQ--PRAASYV 141

Query: 125 NSILRRVSREKIELLQRIAGISI--------------IPEWFKERLENFYGKERVLAISD 170
           N +LR + RE+       A  S                P W  ER  ++ G E  +A+ +
Sbjct: 142 NGVLRALEREQQTPSPPRAARSRNAPGNPEELARRTSHPTWMVERWWSWLGPEATIALCE 201

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGV 222
           +   P  + L V     + A  + +V    G  R        L+     +  L  F  G 
Sbjct: 202 SNNEPPPLTLRVNLLRSSVAEVMESVREAGGEGRPSPVIPGVLRVSGVDVSRLSTFRSGA 261

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
             VQD SA++            VLDLCAAPGGK+A     +    +VTA+D+   ++  +
Sbjct: 262 CSVQDESATLAAWTLQPEPGWEVLDLCAAPGGKSAHLAEWMKGTGRVTAVDIHPHKIPLI 321

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
                RL L     +  D  D     +FDA LVDAPCS  G +RR P++ W R  +DI  
Sbjct: 322 ERTARRLGLPNVHPVCADGRDAPSLGIFDAALVDAPCSGLGVLRRRPELKWRRRPEDIQD 381

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q +LL      ++P GI+V++ C++ + +++ VV+  L         +   +A W 
Sbjct: 382 LVKLQGELLAAAARALRPDGILVYATCTVCEAENDGVVEAFLAGPGGAAFDLEDPAALWP 441

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                M LS     +I P           G DGF+   LRR 
Sbjct: 442 DPLGQMTLSTRFGRQILPFHF--------GGDGFYYARLRRK 475


>gi|238898791|ref|YP_002924473.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466551|gb|ACQ68325.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 429

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 211/454 (46%), Gaps = 41/454 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  + R +++ ++S V+ K  SL+ +L        +     +D+ L++ +   TLR L
Sbjct: 1   MKNTYHLRAIAAQIISQVLDKGRSLSVVLPEVQNHVPY-----KDKALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++  +  ++   L  KK  L  LL V + Q++Y  +  +A++   V+ A   K  + F
Sbjct: 56  PRLEHCVKHLMTRPLNAKKRLLHFLLMVGLYQLIYTRIPPHAILSETVKAAAVLKYPQ-F 114

Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLY 177
             L+N+ILR   R K             + P+W  +R++  Y ++    +       P++
Sbjct: 115 KGLINAILREFERRKESLLQKVEAQDPYLHPQWLLQRIKTAYPEQWPSILRANNERPPMW 174

Query: 178 IDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230
           I + V     E +  +L    +      +         P S+  LPGF  G   VQD SA
Sbjct: 175 IRVNVLHHSREKYLTELEKSGIKAKAHSICLDAVQILPPCSVKELPGFDLGWATVQDVSA 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHL 288
              + L    N+  +LDLCAAPG KT  ++       V A+D+  +RLE+++ NL RLHL
Sbjct: 235 QRCIDLLDPQNDDYILDLCAAPGVKTTHILERAPSADVLAVDIDAKRLERIKENLQRLHL 294

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A  +    +    +   K+FD +L+D PCS+TG IRRHPD+ W R   DI   A  Q +
Sbjct: 295 SARLKVADALVPEQWYEGKMFDKILLDVPCSATGIIRRHPDIKWLRRDSDIAALAQLQSE 354

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           ++      ++ GG++++S CS+  +++++ + + L+   +  E + +             
Sbjct: 355 IIKAVWPTLRQGGMLLYSTCSILPEENQQQITEFLK-HQLNAESITIQDEAVIG------ 407

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++  P         +   DGFF   + +
Sbjct: 408 ------LQNLPQ--------TDEGDGFFYAKITK 427


>gi|304437063|ref|ZP_07397026.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370014|gb|EFM23676.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 449

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/455 (23%), Positives = 189/455 (41%), Gaps = 42/455 (9%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L  V  +       L      +A   +++RD+  +  +V  T++    +D ++
Sbjct: 14  RERAMQVLLRVHSEGAYANVALVDALRGAA---MAERDRRFLTELVYGTVKAGETLDVMI 70

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +   L + +  +++LLR+   QI ++D +   AV   AVE AK+    +  A  VN 
Sbjct: 71  RRYVA-DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKH-GGKGAASFVNG 128

Query: 127 I-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +        +R +  K    + +A     P W  +R  + YG E    +         + 
Sbjct: 129 VLRTALREPQRAALPKGRDARSLALRMQHPVWMVKRWLHDYGYEEAERLCRCDNESAPLT 188

Query: 180 LT---VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASA 230
           L    ++        +L A  +            L     ++ +L    EG+  VQD S+
Sbjct: 189 LRTNTLRTSRTALMERLTAAGVRADASLRVPEGILLRTHGALDALAPLREGLAQVQDESS 248

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   + G    ++V+D CAAPGGKT      + +  ++ A D+ + +L ++  N +RL 
Sbjct: 249 MLVAYILGAEPGMTVIDACAAPGGKTTHIAQRMENRGRILAFDIYEEKLGRIMRNAERLG 308

Query: 288 LYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +   +   +DA +         D VLVDAPCS  G +RR PD  W +   D       Q 
Sbjct: 309 ISIIETQLLDAREIGAHYGVCADRVLVDAPCSGLGVLRRKPDARWRKSPSDAKTLPPLQL 368

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      VK GG++V+S C++++ ++  VV+  LR     V              +  
Sbjct: 369 AILASAARTVKQGGVLVYSTCTMERSENAAVVEAFLRGHEDFV-------LEETGAFLPE 421

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + +  ++I P         + G DGFF   +RR
Sbjct: 422 QKTADRMVQIMP--------ETGGPDGFFIARMRR 448


>gi|153855357|ref|ZP_01996506.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814]
 gi|149752177|gb|EDM62108.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814]
          Length = 436

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/464 (22%), Positives = 197/464 (42%), Gaps = 54/464 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M++ +N R +   +L  + R       ++        ++ L +R++  +  +VN TL  +
Sbjct: 1   MQASVNERELVLDMLLQITRDGEYSHIVIKNVL--DKYQYLDKRERAFITRVVNGTLERM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++      + + K  ++ +LR SV Q+ Y+D V D A+ + AV+ A + +   +
Sbjct: 59  IEIDYIINLFSKVKVNKMKQLIRTILRSSVYQMKYMDSVPDSAICNEAVKLAGK-RGFVN 117

Query: 120 FAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDA 171
               VN +LR +SR   ++            +    +PEW  ++  N Y +E V  I  A
Sbjct: 118 LKGFVNGVLRNISRNLDKINYPDEKDKVSYLSVKYSLPEWLVKQWLNVYDEETVKTIGSA 177

Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGV 222
            +    + +         E     L    +  G              + + +LP F EG+
Sbjct: 178 FLEEKPLTVRFNEHKIKKEDLVGILKKEGVTVGEVPEIPCALYLSGYDHLSALPSFCEGL 237

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKL 279
           + VQD S+              +LD+CAAPGGK+  +         V A D+++ +++ +
Sbjct: 238 YQVQDLSSMQVALWSEVKEGDQILDVCAAPGGKSIHIAELLNGTGHVEARDLTEYKVDLI 297

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           R N++R  L   + +  DA  Y P K    D V+ D PCS  G + + PD+ +  +    
Sbjct: 298 RDNIERSGLTNIEAVCQDATVYDPDKKKSADIVIADLPCSGLGVLGKKPDLRYKMNEKTE 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 QRK+L     +VKP G +++S C++ ++++E  V+  L+  P   ELV      
Sbjct: 358 ADLVELQRKILSVVKDYVKPDGKLLYSTCTIHREENEGNVEWFLKEYP-EFELV------ 410

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                  +++       DGF+   ++R+
Sbjct: 411 ---------------------KDKQMIPGKDAGDGFYIAIIKRV 433


>gi|57866755|ref|YP_188366.1| sun protein [Staphylococcus epidermidis RP62A]
 gi|242242499|ref|ZP_04796944.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|57637413|gb|AAW54201.1| sun protein [Staphylococcus epidermidis RP62A]
 gi|242234073|gb|EES36385.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 435

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 197/460 (42%), Gaps = 47/460 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R  +   ++ V+ K       ++     +    ++  D+ L   +V  TL+  
Sbjct: 2   MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTLKRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + + +      ++QLL +S+ Q LYLD + ++A++  AV+ AK+ +   H
Sbjct: 56  YTLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKK-RGGYH 111

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN ILR V R       +  +  +RIA    +P+W  +     +G E+   I+ + 
Sbjct: 112 TGNIVNGILRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGIEKTENIAQSF 171

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
           + P+   +         ++   KL                L      +V+   F EG   
Sbjct: 172 LEPVATTVRANISRGSIDSIISKLEQEGYHVKKDDMLPFCLHISGLPVVNSNAFKEGYIS 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           +QD S+ +   +     +  VLD C+APGGK   +         V A D+ + ++  ++ 
Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N+ +L L      + DA +   K  +D +LVDAPCS  G +R  P++ +++  + I    
Sbjct: 292 NIKKLKLNNIKAFQHDATEVYDKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +KPGG +V+S C++++ ++E V+   L+      E  P+ +      
Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFLKRHK-DFEFEPIQNPVTGEQ 409

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      ++I P             DGFF   ++R 
Sbjct: 410 V--------KTLQILPQDF--------NSDGFFISKIKRK 433


>gi|224476326|ref|YP_002633932.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420933|emb|CAL27747.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 435

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/455 (22%), Positives = 196/455 (43%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   L  + + +      L+     +    LS+ D+ L+  +V  T++    ++ 
Sbjct: 3   NVRALAFETLEAIFQDKAYSNLKLNEVLKAN---ELSRADKNLLTELVYGTIKRKITLEY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++ LL +S+ Q  YLD V D+A+++ AVE AK  +   H +K+V
Sbjct: 60  YLKPFVQTRIKG---WMRHLLWMSIYQYQYLDKVPDHAIINEAVEIAK-VRGGLHNSKVV 115

Query: 125 NSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +          QRI+ +  +P+W  +     YG +    I+ + +    
Sbjct: 116 NGILRNMMRSNLPNPADIKDDKQRISIMYSMPKWIVKHWVTHYGVDTTERIAQSMLERPG 175

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGG--------IRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V    +T A  +  +                L    + +     F +G+  +QD S
Sbjct: 176 QTVRVNLTRKTVAQAIQQLQDEGYTVVQDSDIEYCLHASGKPVAESRAFKDGIVSIQDKS 235

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +    Q+        +LD C+APGGK  Q          V A D+ + +++ +  N+ +L
Sbjct: 236 SMFVAQILAPAEGDDILDACSAPGGKACQTAELLDGTGHVDATDIHEHKIDLIEHNVRKL 295

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + D      +K++D +LVDAPCS  G +R  P++ + +  + I      Q +
Sbjct: 296 RLKNVTAFQHDDTK-PYEKMYDKILVDAPCSGLGVLRHKPEIKYMQTPETINNLVELQLE 354

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           ++      VKPGG++V+S C++++ ++E V+   L+ +    E  P +    K       
Sbjct: 355 IMNNIKDSVKPGGVIVYSTCTIEQMENENVIYTFLKQNK-DFEFEPFSHPRTKE------ 407

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P   +         DGFF   +RR 
Sbjct: 408 --EVKTLQILPQDFDS--------DGFFITKIRRK 432


>gi|254515962|ref|ZP_05128022.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium NOR5-3]
 gi|219675684|gb|EED32050.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium NOR5-3]
          Length = 433

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 138/458 (30%), Positives = 213/458 (46%), Gaps = 44/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK G   R  ++ +++ V+ +  SL   L+         +L  RDQ L R I   TLR  
Sbjct: 1   MKPGAAVRACAARIIAEVL-RGDSLDRALESHLT-----ILPGRDQPLCREICFGTLRQY 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR+DA+L  +L   L  K   +  L    + Q+  + +  +A V   V+ A   K+ R  
Sbjct: 55  PRLDALLGQLLQKPLRAKDRDVHALALAGLYQLTSMRIPAHAAVSATVDAATVLKK-RQL 113

Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           + L+N++LRR  RE+         A  S  P+W    L   + + R   I+ A  S   +
Sbjct: 114 SGLLNAVLRRFQREEEALLAALSDAQASAHPDWLWNALGQHWPEHR-EQIARANNSYPPM 172

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDAS 229
            L V     D +++  +L    +     RL            +  LPGFAEG+  VQD +
Sbjct: 173 TLRVNLSRVDRDSYLQQLADAGITAHPGRLSPAALTLEQAVDVTLLPGFAEGLCSVQDEA 232

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A +  QL        +LD CAAPGGK+      + S A +TA+D+S+ RL +++ NLDRL
Sbjct: 233 AQLAAQLLAPRPGERILDACAAPGGKSCHILEQLPSDASLTAMDISEERLHRVQENLDRL 292

Query: 287 HLYAEDIIEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            L A  I   D          +  FDA+L+D PCS+TG IRRHPDV   R  +D V  A 
Sbjct: 293 GLAATLI-VGDGGHPPTALVDRGPFDAMLLDVPCSATGVIRRHPDVKVLRREEDAVSFAA 351

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR +L      + PGG +++  CSL  +++ + V + L       E         +++ 
Sbjct: 352 QQRAILNGLWPLLAPGGRLLYVTCSLLPEENSQAVAEFLARQSDASE---------EALH 402

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +A A +    +++ PD+        SG DG +   LR+
Sbjct: 403 VASAQACAQGLQLLPDV--------SGTDGLYFAMLRK 432


>gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 456

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 201/460 (43%), Gaps = 42/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V         LLD  + ++    LS  D  LV  +V   ++    +D 
Sbjct: 14  QARFQALLILDQVENHGGYSNVLLDRFHQET---SLSPVDTNLVVKLVYGVIQRRYSLDY 70

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +    +  LLR+S+ Q +YLD + D+AV   AVE AK    +      V
Sbjct: 71  FLAPFIKG--KKVDDWVASLLRLSIYQFIYLDRIPDHAVFSQAVEMAK-LIGHAGLGGFV 127

Query: 125 NSILRRVSREKI-------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N +LR   R            LQ +A    I  W  + L++   +  + A+  + +   Y
Sbjct: 128 NGVLRNFQRRADLDLNKLENPLQALAVKYSIAPWIIKELQHQISEADLEALLGSLLEEPY 187

Query: 178 ID-------LTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +        L  +   E  + + L +   P   + L+    + V    F +G   +QD S
Sbjct: 188 VSARIVKSGLNSQAAREQLSEEGLTSQASPISPVGLRFESGNPVHSSLFQQGALTIQDES 247

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLD 284
           + +   L      ++VLD CAAPGGK   +        G K+ ALD+S  +L K+  +L 
Sbjct: 248 SQLVASLGKLQAGMTVLDACAAPGGKATHIAQILRDLGGGKLQALDISSAKLTKVDDHLQ 307

Query: 285 RLHLY---AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L    +  + +   F     KL+D + +DAPCS  G +RR P++ +++  + I   A
Sbjct: 308 RLGLSQFVSLQVEDASKFIPTDGKLYDRIYLDAPCSGLGLMRRKPEIKYSKQANHIQALA 367

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL    S +KPGG +++S C+L  Q++EE V   L+      EL  + +    + 
Sbjct: 368 EIQAELLNHTSSLLKPGGYLIYSTCTLASQENEEQVGAFLQEH-EDFELDQIIADEVMAA 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +   ++ +G IRI P             DGFF   L+++
Sbjct: 427 GL---INDQGMIRIWPHQY--------HTDGFFIARLKKI 455


>gi|225018695|ref|ZP_03707887.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
           DSM 5476]
 gi|224948423|gb|EEG29632.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
           DSM 5476]
          Length = 441

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 111/461 (24%), Positives = 195/461 (42%), Gaps = 41/461 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR ++   L  + ++        D     S    LS RD+     +    L   
Sbjct: 1   MINRT-ARDLALSALLKMDKQGAYSNLAFDGMLSSS---SLSPRDRDFAAKLFYGVLETK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D ++         +    ++ +LR+ + QI YLD+ D+A V+ +V   K  +  +  
Sbjct: 57  ITLDYIIASYATMKPEKISSDVRNILRLGLYQIKYLDLEDFAAVNESVNLVK-LRGKKSA 115

Query: 121 AKLVNSILRRVSREKIELLQRIAG------ISIIPEWFKERLENFYGKERVLAISDACIS 174
           +  VN+ILR   R+   +                P W        YG+E    I ++ + 
Sbjct: 116 SGFVNAILRAFLRDGKNIPLPEDPDERLSVRFSCPVWLVRSFVGEYGRETAERILESQLG 175

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE----------LPESIVSLPGFAEGVWW 224
              + L V   ++T A  L A++   G   +               ++     FAEG++ 
Sbjct: 176 RPPLTLRVNT-LKTSAETLCALLQQEGIEAVPHPQEQTCVEVLGGGALTGTKAFAEGLFH 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           VQD S+ +  +   +    ++LD+CAAPGGKT  +       A++TA D+ K+R+  ++ 
Sbjct: 235 VQDISSQLCARTVASYAPRTLLDVCAAPGGKTFTIAEELGDAAEITACDLHKKRVGLIKQ 294

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
              RL L + D +E DA     +   FDAVL D PCS  G IRR P++ + +  + +   
Sbjct: 295 GAARLGLCSVDAVESDASKANDRFGQFDAVLCDVPCSGFGVIRRKPEIKY-KPQESLQGL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L    S+VK GG++++S C++ K+++E+VV + LR +P  V       A    
Sbjct: 354 PAIQGNILQTSASYVKEGGMLIYSTCTIAKRENEQVVDEFLRRNPAFV------PAKLPG 407

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                       +   P +           DGFF    +++
Sbjct: 408 FLHQWVPDAVNRVTFLPGV--------HNSDGFFLAVFQKM 440


>gi|84515082|ref|ZP_01002445.1| ribosomal RNA small subunit methyltransferase B, putative
           [Loktanella vestfoldensis SKA53]
 gi|84511241|gb|EAQ07695.1| ribosomal RNA small subunit methyltransferase B, putative
           [Loktanella vestfoldensis SKA53]
          Length = 422

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 140/439 (31%), Positives = 221/439 (50%), Gaps = 21/439 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +SG+  R  + HLL  +  +      L+       A   L+  D+   + +    LR L 
Sbjct: 3   QSGLLPRRSAHHLLMQITTEGR----LMAELIAGGALAQLAPDDRARAQRLATDALRGLD 58

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R D +L   L          +   LR+ + +++  + A + VV+  VE   R+   +   
Sbjct: 59  RADRMLKPYLKKPPGD---HVMNALRLGLTELMQGE-AAHGVVNAYVEIVARNTRTQSMK 114

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            L N++LRR++ E  E   + A + + P W ++ L   +G++ V  +  A  +   +DLT
Sbjct: 115 GLTNAVLRRIADEGPEAWAKRA-VPLTPGWLRQPLVAAWGRDAVTGMEAAHFAGAPLDLT 173

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
            K D    A  L  V+LPTG +RL +    +  L G+  G WWVQDA+A++PV+L G + 
Sbjct: 174 AKGDPAGLATALGGVVLPTGTVRLAQA-GQVSGLAGYDAGDWWVQDAAAALPVKLLGDVT 232

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            L VLDLCAAPGGKT QL   GA VTA+D+S++R+ +L  NL R  L A  ++       
Sbjct: 233 GLRVLDLCAAPGGKTLQLAAGGADVTAVDLSEKRMTRLTENLARTGLAATTLVSDAFALT 292

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                +DAVL+DAPCS+TGTIRRHPD+ + +D  +       Q +L+   +S ++PGG +
Sbjct: 293 TGG--YDAVLLDAPCSATGTIRRHPDLPYAKDGSEFGALIAQQERLIDHALSLLRPGGRL 350

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL   + E  +++ L   P      P+ +           ++ EG +R+ PD   
Sbjct: 351 VYCTCSLLPDEGEVQIEEALARHPGLRVEPPMMAGV-----DPAWITEEGGLRLRPDYW- 404

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  GMDGF+   L +
Sbjct: 405 ---PDLGGMDGFYIAVLTK 420


>gi|125624853|ref|YP_001033336.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|4210751|emb|CAA10711.1| sunL protein [Lactococcus lactis]
 gi|124493661|emb|CAL98648.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071650|gb|ADJ61050.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 424

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 109/452 (24%), Positives = 194/452 (42%), Gaps = 37/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    NAR  +  +L+ +          LD    DS    LS  D+  V A+V   +   
Sbjct: 1   MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKGFVTALVYGVVSKK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  +  +L           + LL +++ Q+L++D V   A VD AV+ AKR    + 
Sbjct: 56  ALLEWYITPLLKKEPK---PWAKMLLLLTIYQVLFMDKVPISAAVDEAVKIAKRHDG-QA 111

Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177
            A  +N++LR   R +    +         +P+   +++   +G +R   I ++   P +
Sbjct: 112 TANFINAVLRNFMRSEHRNEEPKDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           + L         A    +++  T    L     +      F  G   +QD ++ +     
Sbjct: 172 VSLRKIDPTVEIAGTRPSLLTETA---LIADSGNFSITEEFQTGRITIQDETSQLVAPQL 228

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
                  VLD CAAPGGK+  +        +TALD+ + +L+ +  N  R H+       
Sbjct: 229 ELEGTEEVLDACAAPGGKSTHMAQYLTTGHITALDLYEHKLDLINQNAQRQHVADKITTQ 288

Query: 295 EMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           + DA         + FD +LVDAPCS  G IRR PD+ + +++ D +     Q ++L   
Sbjct: 289 KADATMIYENFGPEKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFIDLQKIQLEILNSA 348

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K  GI+V+S C++  +++ +VV + L + P   E V +++   + I        EG
Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVHEFLENHPN-FEQVEISNEKPEVI-------KEG 400

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            + ITP+M           DGFF    +++ +
Sbjct: 401 CLFITPEMY--------HTDGFFIAKFKKIGE 424


>gi|259417637|ref|ZP_05741556.1| Fmu [Silicibacter sp. TrichCH4B]
 gi|259346543|gb|EEW58357.1| Fmu [Silicibacter sp. TrichCH4B]
          Length = 436

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 137/434 (31%), Positives = 210/434 (48%), Gaps = 23/434 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  LL  V+ +      LL  E        L   D+   + +    LR L R D V
Sbjct: 23  ARRAAVTLLDKVLGEG-----LLLAECQTQVLERLEPADRARAQRLALEVLRSLERADRV 77

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   L          ++  LR+   ++     A + VV+  V    R + +     LVN+
Sbjct: 78  LAKHLRKPP---ALHVRNALRLGTVELC-SGGAAHGVVNDIVNLVARHRRHAQLKGLVNA 133

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           +LR+V+ +      ++  +  +P+W +  L   +G + +LAI  A +    +DL+ K   
Sbjct: 134 VLRKVATDGPTEWAKL-RVPRLPKWLRSPLAQAWGSDAMLAIEAAHLKGAPLDLSFKPGA 192

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           +     L     PTG +RL +    + +LPG+ +G WWVQDA+A++P +L        VL
Sbjct: 193 D--LSALGGKPTPTGSLRLDDA-GQVSALPGYEQGDWWVQDAAAALPARLIHAQAGERVL 249

Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           DLCAAPGGKT Q+  +GA VTA+D+S+ RL +L+ NL R    A  +I  D      K  
Sbjct: 250 DLCAAPGGKTLQMAAAGADVTAVDISEGRLARLQENLTRTGFSA-HVIAGDVL--AQKGQ 306

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +DAVL+DAPCS+TGTIRRHPD+   +D          Q ++L    + V+PGG +V+  C
Sbjct: 307 YDAVLLDAPCSATGTIRRHPDLPHAKDGAGFGALIELQAQMLAHAWTLVRPGGRLVYCTC 366

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL   + E  ++  L   P     +       + ID A  ++ EG +R+ PD        
Sbjct: 367 SLLPDEGECQIEDALEMFPEA--RIGDRIQTLEGIDPAW-ITEEGGLRLRPDYW----PE 419

Query: 427 SSGMDGFFAVALRR 440
             GMDGF+   L +
Sbjct: 420 IGGMDGFYMAELIK 433


>gi|289824193|ref|ZP_06543788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 403

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 112/396 (28%), Positives = 195/396 (49%), Gaps = 23/396 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +       + W   L    +                P  + +LPGFAEG   VQDAS
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A          N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL 
Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294

Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q
Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            ++L      +KPGG +V++ CS+  +++ + ++  
Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAF 389


>gi|116512767|ref|YP_811674.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116108421|gb|ABJ73561.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 424

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 109/452 (24%), Positives = 195/452 (43%), Gaps = 37/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    NAR  +  +L+ +          LD    DS    LS  D+  V A+V   +   
Sbjct: 1   MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKGFVTALVYGVVSKK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  +  +L           + LL +++ Q+L++D V   A VD AV+ AKR    + 
Sbjct: 56  ALLEWYITPLLKKEPK---PWAKMLLLLTIYQVLFMDKVPTSAAVDEAVKIAKRHDG-QA 111

Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177
            A  +N++LR   R +    +         +P+   +++   +G +R   I ++   P +
Sbjct: 112 TANFINAVLRNFMRSEHRNEEPKDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           + L         A    +++  T    L     +   +  F  G   +QD ++ +     
Sbjct: 172 VSLRKIDPTVEIAGTRPSLLTETA---LIADSGNFSIIEEFQTGRITIQDETSQLVAPQL 228

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
                  VLD CAAPGGK+  +        +TALD+ + +L+ +  N  R H+       
Sbjct: 229 ELEGTEEVLDACAAPGGKSTHMAQYLTTGHITALDLYEHKLDLINQNAQRQHVADKITTQ 288

Query: 295 EMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           + DA         + FD +LVDAPCS  G IRR PD+ + +++ D +     Q ++L   
Sbjct: 289 KADATMIYENFGPEKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFIDLQKIQLEILNSA 348

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K  GI+V+S C++  +++ +VV + L + P   E V +++   + I        EG
Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVHEFLENHPN-FEQVEISNEKPEVI-------KEG 400

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            + ITP+M           DGFF    +++ +
Sbjct: 401 CLFITPEMY--------HTDGFFIAKFKKIGE 424


>gi|254466360|ref|ZP_05079771.1| Fmu [Rhodobacterales bacterium Y4I]
 gi|206687268|gb|EDZ47750.1| Fmu [Rhodobacterales bacterium Y4I]
          Length = 420

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 137/442 (30%), Positives = 216/442 (48%), Gaps = 22/442 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    +AR  + +LL  V+ +      LL   Y   A   L+  D+   + +   TLR L
Sbjct: 1   MSDANHARRTAVYLLDQVLGEGR----LLAECYAAGALEKLAPEDRARAQRLAVETLRSL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D +L   L  + P     +   LR+   ++     A + VV+  V    + + +   
Sbjct: 57  ERADRLLKKHLKKTPPLM---VMNALRLGTVELC-SGGAAHGVVNAMVAIVSKHRRHGQL 112

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN++LR+V+ E      ++  +  +P W ++ L   +G + +L +  A  +   +D+
Sbjct: 113 KGLVNAVLRKVAEEGPAEWAKL-RVPRLPNWLRKPLVQAWGADAILGMEAAHYAGAPLDI 171

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T K  ++     L  V LPTG +R+      + +LPG+  G WWVQDA+A++P  +    
Sbjct: 172 TGKPGVD--LQALGGVPLPTGSLRIS-SAGQVSALPGYQAGDWWVQDAAAALPALILNAQ 228

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
                LDLCAAPGGKT Q+  +GA VTA+DVS+ R+ +LR NL+R  L A  ++      
Sbjct: 229 PGEHALDLCAAPGGKTMQMAAAGASVTAVDVSESRVARLRENLERTGLVAHLVV---GDA 285

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 +DAVL+DAPCS+TGTIRRHPD+   +D  +       Q ++L    + VKPGG 
Sbjct: 286 LEQTGQYDAVLLDAPCSATGTIRRHPDLPQAKDGSEFGALIELQAQMLAHAWTLVKPGGR 345

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++  CSL   + E  V++ L   P    +     A       A  ++ EG +R+ PD  
Sbjct: 346 LMYCTCSLLPDEGECQVEEALDMFPD---MAADREALKVPGVEADWITEEGGLRLRPDYW 402

Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
                   GMDGF+   LR+  
Sbjct: 403 ----PERGGMDGFYMALLRKTA 420


>gi|260426788|ref|ZP_05780767.1| Fmu [Citreicella sp. SE45]
 gi|260421280|gb|EEX14531.1| Fmu [Citreicella sp. SE45]
          Length = 420

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 142/440 (32%), Positives = 230/440 (52%), Gaps = 22/440 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  LL  V+ +      LL       A+  L+  ++   + +    LR L
Sbjct: 1   MPATPTARGQAVQLLGQVLGQGR----LLSEAMSGGAWDSLAPAERAAAQRLAQEVLRNL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D VL   L  + P     ++ +LR+   ++     A + VV+ AV+    D++    
Sbjct: 57  ERCDRVLKPHLRKAPP---LFVKNVLRLGAWELC-TGGAAHGVVNEAVQLVGADRKAHSM 112

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             +VN++LR+++ E      ++  +  +P W ++ L + +G + V A+  A ++   +DL
Sbjct: 113 KGMVNAVLRKLAAEGPAQWTKL-RVPRLPRWLRDPLASAWGGKPVAAMEAAHLAGAPLDL 171

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T K D    A +L   +LPTG +RL +    + +LPG+ EG WWVQDA+A++P +L G +
Sbjct: 172 TAKGDPAALAERLGGELLPTGSVRLLDA-GQVSALPGYDEGAWWVQDAAAALPARLLGDV 230

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
             L VLD+CAAPGGKT QL  +GAKVTALD+S+ R+ ++  NL R  L A  +       
Sbjct: 231 AGLEVLDMCAAPGGKTMQLAAAGAKVTALDLSESRMARVTENLARTGLSATTVT---GDA 287

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              +  +DA+L+DAPCS+TGTIRRHPD+   +  + I +    Q  +    +  ++PGG 
Sbjct: 288 MEHEGSYDAILLDAPCSATGTIRRHPDLPHAKHGEGITELIGLQEAMFDHALRLLRPGGR 347

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VF  CSL   + E  V++ L   P  +E++P  +   +        S EG +R+ PD  
Sbjct: 348 LVFCTCSLIPDEGECHVEEALARHPG-LEVLPAEAPGIED----RWRSAEGGLRLRPDFW 402

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +      GMDGF+   LR+
Sbjct: 403 AE----RGGMDGFYMAHLRK 418


>gi|52426258|ref|YP_089395.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308310|gb|AAU38810.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
          Length = 470

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 212/467 (45%), Gaps = 50/467 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R +S+ ++  V+ +  SL+ L+           +  +D  L++ I     R LP
Sbjct: 26  KKIQSVRALSARIILQVLDQGKSLSALIPEL-----QSQVKAQDLPLLQEICFGVCRVLP 80

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R++ ++  ++   L  K   +  LL V + QILY  +  +A VD  V  A    ++ +F 
Sbjct: 81  RLEQIIKKLVDKPLKGKTRIVHCLLLVGLYQILYTRIPAHAAVDEVVN-ATSALKSENFR 139

Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN +LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P++I 
Sbjct: 140 GLVNGVLRRFLREQQEILAVVDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWIR 199

Query: 180 LTVKFDIET-------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           +  +               +L++             P ++ +LP F EG   VQD  A  
Sbjct: 200 VNQQLCTTENYRTLLLTEQELDSFKDENPNALRLAQPTAVQNLPHFTEGWVTVQDVHAQW 259

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L    N   +LD CAAPGGKT  ++     AKV ALDV + RL ++  NL RL+  A
Sbjct: 260 SALLLEAKNGDLILDACAAPGGKTTHILELAPQAKVIALDVEQSRLNRVAENLARLNQQA 319

Query: 291 EDIIEMDAFDYCPKKL--------------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
             I   DA                      FD +L+DAPCS+TG IRRHPD+ W R   D
Sbjct: 320 VLI-CGDATKPDDWLPNAAERLIGKKTDLQFDRILLDAPCSATGVIRRHPDIKWLRQEQD 378

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           I + A  Q+++L      +KP GI++++ CSL  Q++ E ++  L ++P   +L PL  A
Sbjct: 379 IGQLAALQQQILTALWKKLKPNGILLYATCSLLPQENSEQIRTFLANTP-DAKLEPLPFA 437

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             ++         E   +  P             DGF+   LR+  +
Sbjct: 438 TQEN---------EIGKQFIPSEFSG--------DGFYYAKLRKTDK 467


>gi|83941724|ref|ZP_00954186.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sulfitobacter sp. EE-36]
 gi|83847544|gb|EAP85419.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sulfitobacter sp. EE-36]
          Length = 423

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 143/441 (32%), Positives = 227/441 (51%), Gaps = 21/441 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +G+ AR  + +LL  ++ +      L+       A   L   D+   + +   TLR 
Sbjct: 1   MSDTGVQARRSAVYLLDMILGEER----LMSELLSAGALDKLPPDDRARAQRLAMDTLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           + R D +L   L    P    +++  LRV   ++     A + VV+  VE     K+  H
Sbjct: 57  MERADRLLQKHLSKYPP---LTVRNALRVGTVELCQGG-AAHGVVNAMVELVATHKKLGH 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              L N++LR+++ E  E    +     +P+W +  L   +G + +  I  A  +   +D
Sbjct: 113 LKGLTNAVLRKIAAEGPEAWAAL-RAPRLPKWLRGPLTEAWGPDAMTGIEAAHFAGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LT K D E  A  +   +LPTG +R+ +    + ++PGFAEG WWVQDA+A++PV++   
Sbjct: 172 LTAKRDPEGLAAAVGGTVLPTGSVRVADA-GQVTTMPGFAEGDWWVQDAAAALPVKILAP 230

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
               +VLDLCAAPGGKT QL  +GA+VTA+D SK+R++++R NL R+HL A+ ++     
Sbjct: 231 QKGEAVLDLCAAPGGKTMQLAAAGAQVTAVDNSKQRMQRVRENLARVHLPAKVVVV---D 287

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               +  FDA+L+DAPCS+TGTIRRHPD+   +D  +       Q +++    S + PGG
Sbjct: 288 ARRFEGTFDAILLDAPCSATGTIRRHPDLPHAKDGSEFGDLIELQSEMIDHAWSLLNPGG 347

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            ++F  CSL   + E  V + L         V  ++     +D A   + EG +R+ PD 
Sbjct: 348 RLIFCTCSLLPDEGEVQVDEALERHADM--RVDRDALAVPGVDPAWT-TQEGGLRLRPDY 404

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
                    GMDGF+   LR+
Sbjct: 405 W----PELGGMDGFYIACLRK 421


>gi|188588047|ref|YP_001920563.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251779411|ref|ZP_04822331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188498328|gb|ACD51464.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243083726|gb|EES49616.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 438

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 194/457 (42%), Gaps = 41/457 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++  +L  V+ +      +L  E  +     L +RD+ L+  IV   LR    +D
Sbjct: 1   MNCRNLAVKILKRVIDEGAYSNIILSNELNE---ANLEERDKALLTEIVYGVLRRKKTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++   +   +    + +  +LRV++ Q+ +LD V  YA  + AV++AK+   +    KL
Sbjct: 58  LIIANFV-RDIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKI--SPEAGKL 114

Query: 124 VNSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR  S++          +   A       W    L   YG++    I         
Sbjct: 115 VNGILRNFSKDPDDITISGNKINEYAYKFSFEPWMIRLLIKQYGEDLAKKIMVGLNQIPQ 174

Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             + V      +                        L +   SI   P F +G   VQD 
Sbjct: 175 TTVRVNDTKCEYDEVFEKLEEIGYCVEEGFMCPEAILIKGGSSIQENPLFKDGEITVQDE 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +   L    N++ VLDLC+APGGKT  +     +  +V A D+ + +L  ++ N +R
Sbjct: 235 SAMLVAPLLELENDMKVLDLCSAPGGKTTHIAELLQNTGEVRAFDLHESKLGLIKENCER 294

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L    I   DA           D VL+D PCS  G IR+ P++ W +  +++ +    
Sbjct: 295 LGLNNVKIEVGDATKLNADLVSYADRVLIDVPCSGLGIIRKKPEIKWNKTRENLREIIPV 354

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR+++     ++K GG++++S C+L+K+++EE ++  L +              +   + 
Sbjct: 355 QREIMNNAWEYLKNGGVMIYSTCTLNKEENEENIEWFLNTHKDCKL-----KTIFIGKED 409

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  G + I P+           MDGFF   L +
Sbjct: 410 NLIYNKNGTLTILPNA---------KMDGFFVAKLEK 437


>gi|27467810|ref|NP_764447.1| RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
 gi|293366818|ref|ZP_06613494.1| RNA methyltransferase Sun [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315354|gb|AAO04489.1|AE016746_279 RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
 gi|291319119|gb|EFE59489.1| RNA methyltransferase Sun [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736213|gb|EGG72485.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis VCU028]
 gi|329736541|gb|EGG72807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis VCU045]
          Length = 435

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 104/460 (22%), Positives = 195/460 (42%), Gaps = 47/460 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R  +   ++ V+ K       ++     +    ++  D+ L   +V  T++  
Sbjct: 2   MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTIKRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + + +      ++QLL +S+ Q LYLD + ++A++  AV+ AK+     H
Sbjct: 56  YTLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGF-H 111

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN ILR V R       +  +  +RIA    +P+W  +     +G E+   I+ + 
Sbjct: 112 TGNIVNGILRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGVEKTENIARSF 171

Query: 173 ISPLYIDLTVKFDIETW---AHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
           + P+   +      ++      KL                L      +V+   F EG   
Sbjct: 172 LEPVTTTVRANISRDSIDSIISKLEQEGYHVKKDDMLPFCLHISGMPVVNSNAFKEGYIS 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           +QD S+ +   +     +  VLD C+APGGK   +         V A D+ + ++  ++ 
Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N+ +L L      + DA +   K  +D +LVDAPCS  G +R  P++ +++  + I    
Sbjct: 292 NIKKLKLNNIKAFQHDATEVYDKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +KPGG +V+S C++++ ++E V+   L+      E  P  +      
Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFLKRHK-DFEFEPFQNPATGEQ 409

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      ++I P             DGFF   ++R 
Sbjct: 410 V--------KTLQILPQDF--------NSDGFFISKIKRK 433


>gi|251810647|ref|ZP_04825120.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876351|ref|ZP_06285218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis SK135]
 gi|251805807|gb|EES58464.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295376|gb|EFA87903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis SK135]
          Length = 435

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 196/460 (42%), Gaps = 47/460 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R  +   ++ V+ K       ++     +    ++  D+ L   +V  T++  
Sbjct: 2   MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTIKRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + + +      ++QLL +S+ Q LYLD + ++A++  AV+ AK+ +   H
Sbjct: 56  YSLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKK-RGGYH 111

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN +LR V R       +  +  +RIA    +P+W  +     +G E+   I+ + 
Sbjct: 112 TGNIVNGVLRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGVEKTENIARSF 171

Query: 173 ISPLYIDLTVKFDIETW---AHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
           + P+   +      ++      KL                L      +V+   F EG   
Sbjct: 172 LEPVTTTVRANISRDSIDSIISKLEQEGYHVKKDDMLPFCLHISGMPVVNSNAFKEGYIS 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           +QD S+ +   +     +  VLD C+APGGK   +         V A D+ + ++  ++ 
Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N+ +L L      + DA +   K  +D +LVDAPCS  G +R  P++ +++  + I    
Sbjct: 292 NIKKLKLNNIKAFQHDATEVYDKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +KPGG +V+S C++++ ++E V+   L+      E  P  +      
Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFLKRHK-DFEFEPFQNPATGEQ 409

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      ++I P             DGFF   ++R 
Sbjct: 410 V--------KTLQILPQDF--------NSDGFFISKIKRK 433


>gi|300024959|ref|YP_003757570.1| sun protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526780|gb|ADJ25249.1| sun protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 468

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 160/440 (36%), Positives = 235/440 (53%), Gaps = 9/440 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+ AR V+   L  V+ ++     +       +A R L+ RD+   R I    LR   
Sbjct: 34  ADGLLARDVAVSALFSVLVEKRPFDDV---FAKAAAARNLAPRDRAFARLIATTVLRNRG 90

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + AVL   L   LP     L+Q+L  + AQ+L +    +A + LAV+Q + D+  + F 
Sbjct: 91  SLQAVLRTYLEKPLPEHLGRLEQILLAAAAQLLLIKTPPHAAISLAVDQCRADRVGKRFG 150

Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR+S      L  +  +    P+W   R    YG      I+ A +S   +D+
Sbjct: 151 NLVNAVLRRLSESGSGRLASLDNVMLTFPDWLMARWSRTYGAAEARQIARASLSEPSLDI 210

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           TVK D + WA +LN V LPTG IR       +  L G+ +G WWVQDA+A++PV+L G +
Sbjct: 211 TVKSDADAWASRLNGVALPTGSIRCSH-VGRVEELDGYNDGAWWVQDAAAALPVKLLGDV 269

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           + LS LDLCAAPGGKTAQL   GA+V A+D S  RL +L+ NL RL L AE I   DA  
Sbjct: 270 SGLSALDLCAAPGGKTAQLAAGGARVVAVDKSAGRLARLQENLQRLGLSAE-ISVADAQS 328

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           +  +  FD VL+DAPC++TGTIRRHPD+L+ +  +D+   A  Q KLL Q    VK GG 
Sbjct: 329 FSSETAFDVVLLDAPCTATGTIRRHPDILYLKRPEDVAALAALQAKLLRQAAGLVKSGGT 388

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++  CSL+ ++ EE +   L              A  +++   +  + +G +R  P   
Sbjct: 389 LLYCTCSLEPEEGEEQIAAFLSEHRDFRRR---PIALDETVIPLLWRTADGDLRTLPSYF 445

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            ++     G+DGF+A  L +
Sbjct: 446 SELPEGFRGLDGFYAAMLVK 465


>gi|170741154|ref|YP_001769809.1| Fmu (Sun) domain-containing protein [Methylobacterium sp. 4-46]
 gi|168195428|gb|ACA17375.1| Fmu (Sun) domain protein [Methylobacterium sp. 4-46]
          Length = 447

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 175/446 (39%), Positives = 235/446 (52%), Gaps = 12/446 (2%)

Query: 2   KSGMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
            +G+ AR ++   ++ ++  R   +L  +LD     +A   L   D  L RAI   T R 
Sbjct: 9   TAGLAARRLAYASVADLLGARSGTALDDVLDPAASRAA---LPGPDLALARAIATATFRH 65

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L  I   L   L   LP  +  L  LL    AQIL L+V D+A VDLAV  AK D   RH
Sbjct: 66  LGLIRHALAARLAEGLPEGQPKLLALLATGAAQILVLNVQDHAAVDLAVRLAKADSGLRH 125

Query: 120 FAKLVNSILRRVSREKIELLQRIAGIS---IIPEWFKERLENFYGKERVLAISDACISPL 176
            + LVN++LRR+SREK  +L+           P W   R    YG E   +I+ A +   
Sbjct: 126 LSGLVNAVLRRISREKAAILREGEADPLGIETPGWLARRWSAAYGAETARSIAAAHLRGA 185

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            +DL+V+ D   WA +L A +LPTG +RL E    +  LPGFAEG WWVQDA+A++P +L
Sbjct: 186 PLDLSVRGDPAPWAERLGARLLPTGSLRLDESRTPVPLLPGFAEGEWWVQDAAAALPARL 245

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                   V DLCAAPGGKTAQL  +GA V A+D S+ RL +LR NL RL L AE     
Sbjct: 246 LAVRPGERVADLCAAPGGKTAQLAAAGASVLAVDRSEARLRRLRENLARLGLTAEARAAD 305

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            A      + FDA+L+DAPCS+TGTIRRHPDV WT+   D+ +    Q +LL +    ++
Sbjct: 306 -ALALPEDERFDAILLDAPCSATGTIRRHPDVAWTKREADLGRLTALQARLLDKAARLLR 364

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+  CSL+ ++ E   +  L   P             +    A  L P G +R  
Sbjct: 365 PGGRLVYCTCSLEPEEGEGQAEAFLARHPDFARR---PVDPAEIGGEAALLGPAGDLRTL 421

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P      +G   G+DGFFAV L +  
Sbjct: 422 PCAWLPAEGGRGGLDGFFAVRLGKAA 447


>gi|83950714|ref|ZP_00959447.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius nubinhibens ISM]
 gi|83838613|gb|EAP77909.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius nubinhibens ISM]
          Length = 410

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 136/427 (31%), Positives = 221/427 (51%), Gaps = 19/427 (4%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  +  +   L  LL       A   L   D+   + +   TLR + R D ++   +  
Sbjct: 1   MLDKITGEGRMLQDLL----AAGAVDRLDPADRARAQRLTTQTLRAMERADRLISRHVKK 56

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
             P    +++ +LR++  ++ Y     + VV  AV  A   + ++++  LVN++LR+++ 
Sbjct: 57  KPP---LTIRNILRLATVELAYGG-DAHGVVGEAVTLAGEGQRSQNYKGLVNAVLRKIAE 112

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
           E       +  +  +P W +  L + YG   V  +  A  +   +DLT K D    A   
Sbjct: 113 EAPRSWNDL-RVPRLPGWLRGPLLDAYGPGAVNGMEAAHFAGAPLDLTAKTDAAALAEAT 171

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
              +LP+G +RL + P  + +LPG+AEG +WVQDA+A++PV++       +VLDLCAAPG
Sbjct: 172 GGTLLPSGSVRLTD-PGQVSALPGYAEGAFWVQDAAAAMPVRILDPKPGENVLDLCAAPG 230

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313
           GKT Q+  SGA  TALD+S +R+++++ NL+R  L A    E           +DA+L+D
Sbjct: 231 GKTLQIAASGASATALDLSAQRMQRVQENLERTGLAASC--ETGDALRHTGGPYDAILLD 288

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS+TGT+RRHPD+ + +D  DI +    Q ++L   +S +KPGG ++F  CSL   + 
Sbjct: 289 APCSATGTLRRHPDLPFAKDGSDIGRLITLQGEMLDHALSLLKPGGRLMFCTCSLLPDEG 348

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E  V++ L        LV    A  +       ++ EG +R+ PD          GMDGF
Sbjct: 349 ECHVEEALLRHEG---LVVDREALAQPGIDPAWITEEGGLRLRPDYWAD----QGGMDGF 401

Query: 434 FAVALRR 440
           +   LR+
Sbjct: 402 YMALLRK 408


>gi|210617187|ref|ZP_03291454.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787]
 gi|210149462|gb|EEA80471.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787]
          Length = 430

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 177/440 (40%), Gaps = 37/440 (8%)

Query: 25  LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84
               L      + ++ L ++++  +  +   TL  +  +D +++      + + K  ++ 
Sbjct: 2   SHIALRNVL--NKYQYLDKKERAFITRVTEGTLERMIELDYIINQFSKVKVNKMKPVIRN 59

Query: 85  LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI- 142
           ++R +V Q+ Y+D V + A  + AV+ A + K   +    VN +LR + R   ++     
Sbjct: 60  IIRSAVYQMKYMDSVPNSAACNEAVKLAVK-KGFVNLKGFVNGLLRNIDRNLEQISYPDE 118

Query: 143 -------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHK 192
                  +    +P W   +    Y +E V  +    +      +     +   E     
Sbjct: 119 KDLEQYLSVKYSMPTWILRQWLAAYDRESVECMLQDFLKEKDTIIRCDLGQMPKEELVKA 178

Query: 193 LNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           L    +             I S      L  F +G + VQD S+ +   L        ++
Sbjct: 179 LEGEGVHVEEHPYLPYALRISSYNYLGELETFQKGAFSVQDISSMLVAHLAEPKEGDEII 238

Query: 247 DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           D+CAAPGGK   +         V A D+++ ++  +  N+ R  +   + +  DA     
Sbjct: 239 DVCAAPGGKALHMAEVLCGTGHVQARDLTEYKVGLIEENILRSGMTNIEAVRWDATQKDE 298

Query: 304 K--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              +  D V+ D PCS  G + +  D+ +    +   +    QRK+L     +VKPGG +
Sbjct: 299 TAVEKADIVVADLPCSGLGVLGKKTDLKYKMTEETQKELVALQRKMLSTVKDYVKPGGTL 358

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C++ ++++   V   L  +    ELVP+     +  ++   +  +G I++ P +  
Sbjct: 359 VYSTCTIHEEENMGNVHWFLEQNK-EFELVPIAQLLCE--ELKNDVVEQGCIQLLPGI-- 413

Query: 422 KIDGVSSGMDGFFAVALRRL 441
                    DGFF    R++
Sbjct: 414 ------HDSDGFFIAKFRKV 427


>gi|319401490|gb|EFV89700.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis FRI909]
          Length = 435

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 196/460 (42%), Gaps = 47/460 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R  +   ++ V+ K       ++     +    ++  D+ L   +V  TL+  
Sbjct: 2   MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTLKRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + + +      ++QLL +S+ Q LYLD + ++A++  AV+ AK+ +   H
Sbjct: 56  YTLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKK-RGGYH 111

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN ILR V R       +  +  +RIA    +P+W  +     +G E+   I+ + 
Sbjct: 112 TGNIVNGILRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGIEKTENIAQSF 171

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
           + P+   +         ++   KL                L      +V+   F EG   
Sbjct: 172 LEPIATTVRANISRGSIDSIISKLEQEGYHVKKDDMLPFCLHISGLPVVNSNAFKEGYIS 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           +QD S+ +   +     +  VLD C+APGGK   +         V A D+ + ++  ++ 
Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N+ +L L      + DA +   K  +D +LVDAPCS  G +R  P++ +++  + I    
Sbjct: 292 NIKKLKLNNIKAFQHDATEVYNKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +KPGG +V+S C++++ ++E V+   L+      E  P  +      
Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFLKKHK-DFEFEPFQNPATGEQ 409

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      ++I P             DGFF   ++R 
Sbjct: 410 V--------KTLQILPQDF--------NSDGFFISKIKRK 433


>gi|126738334|ref|ZP_01754055.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. SK209-2-6]
 gi|126720831|gb|EBA17536.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. SK209-2-6]
          Length = 432

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 144/439 (32%), Positives = 215/439 (48%), Gaps = 22/439 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+ AR    +LL  V+ +      LL   Y   A   L+  ++   + +   TLR L 
Sbjct: 14  SDGIPARRTVIYLLDQVLGEGR----LLSECYAAGALERLAPDERARAQRLAAETLRSLE 69

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R D +L   L  S P    ++   LR+   ++     A + VV+  V    + + +    
Sbjct: 70  RADRILQKHLKKSTP---LTVHNALRLGTVELCQGG-AAHGVVNAMVTIISKHRRHGKLK 125

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LR+V+ +     Q++  +  +P+W +  L   +G E ++AI  A  +   IDLT
Sbjct: 126 GLVNAVLRKVAEQGPAEWQKL-RVPRLPKWLRSPLAEAWGNEAMMAIEAAHFTGAPIDLT 184

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
            K   +     L    L TG  RL E    + +LPG+  G WWVQDA+A++P Q+     
Sbjct: 185 GKRGAD--LSALPGKRLATGSFRLAEA-GQVSALPGYEAGDWWVQDAAAALPAQMLDAKP 241

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              VLDLCAAPGGKT Q+  +GA+V A+D S  R+E+L+ NL R  L   D+I  DA + 
Sbjct: 242 GERVLDLCAAPGGKTMQMAEAGAQVLAVDTSASRMERLQENLTRTGL-NADLIVGDALEQ 300

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                +DAVL+DAPCS+TGTIRRHPD+   +D          Q ++L    S VKPGG +
Sbjct: 301 T--GQYDAVLLDAPCSATGTIRRHPDLPHAKDGSGFGALIELQAQMLAHAWSLVKPGGRL 358

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+  CSL   + E  V++ L   P                D    ++ EG +R+ PD   
Sbjct: 359 VYCTCSLLPDEGECQVEEALDMFPDMTVDRSAVELPGVEPDW---ITEEGGLRLRPDYW- 414

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  G+DGF+   LR+
Sbjct: 415 ---SDRGGIDGFYMALLRK 430


>gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B
           [Phascolarctobacterium sp. YIT 12067]
          Length = 453

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 97/461 (21%), Positives = 186/461 (40%), Gaps = 47/461 (10%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  ++ L+  V+         L+     S    LS  D+ L   +V  T++    +D  
Sbjct: 13  ARGAAALLVRMVLEDGAYTNIALNQYLRGSR---LSDLDRRLATELVYGTVKASGTLDWY 69

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +   L +    +  +LR+S  Q+LY+  +   A V+ AV+ A+    +   AK VN
Sbjct: 70  LAQCVSRPLDKVAGDILAILRISTYQLLYMTRIPASAAVNEAVKLARSV-SHEGSAKFVN 128

Query: 126 SILRRV-----------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
            +LR +              + +    ++     P W  +R    +G+     +     +
Sbjct: 129 GVLRGLLRKQEAGAFVLPDTEKQDADYLSLQYYHPRWLVKRWLGPWGRGGTERLLAFDNT 188

Query: 175 PLYIDLTVKF---DIETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
              + L V       +     L            +    + E   S+ +L       +++
Sbjct: 189 AAPVCLRVNTLVTTRDKLLADLTEMGAQVHASEWSPYGIVAEHLPSLHTLLAALPQHFYI 248

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD S+ +   +      + VLD+C+APGGK   +   +    +V A D+ + +LE +  N
Sbjct: 249 QDESSMLVAPVLAPQPGMRVLDMCSAPGGKATHVAQLMQDKGEVIACDIHEHKLELIAEN 308

Query: 283 LDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
             RL + +   ++ DA     +   +FD VLVDAPCS  G +RR  +  W +   D+   
Sbjct: 309 AARLGMKSVKTLQNDALQLRSEWLGVFDRVLVDAPCSGLGVLRRRAEARWRKQRKDLKLF 368

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L     +VK GG +V+S C++++ ++  +V++ L   P    +   +    + 
Sbjct: 369 PPLQLAILKNAAQYVKDGGTMVYSTCTIEQSENHYLVEEFLTQHPEWQRVEFTHPLTGEQ 428

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +           +++ P         + G+DGF+   L + 
Sbjct: 429 VQE---------LQLLPQ--------NDGIDGFYICKLMKK 452


>gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
 gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
          Length = 442

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 195/461 (42%), Gaps = 48/461 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           ++AR ++   L  V  K       L       A       D+ LV  +V  T+R    +D
Sbjct: 3   LSARRLALDTLERV-AKGAYADVALHQVLQRYALHG---SDRTLVTELVYGTIRQQRTLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++        P     +Q +LR+ + Q+ YLD +  +A V  +VE  K+      FAKL
Sbjct: 59  TLIQGFCRQLPP---LPVQLVLRLGLYQLRYLDRIPAHAAVHSSVELVKQI-GLEGFAKL 114

Query: 124 VNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACI 173
           VN +LRR SR   + L+                  P+            +   A+     
Sbjct: 115 VNGVLRRYSRCTTDPLEAFIAHLPLVSQLGCRYSFPDELIASWLERLPLQECTALCQWFN 174

Query: 174 SPLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
            P  +DL +            D ET  + L  +     G+ L    +S+  LPG+A G W
Sbjct: 175 QPPRLDLRLNPLRITADQLIADFETAGYGLQPIPPLPQGLVLSHCGQSMQELPGYAAGHW 234

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD +A     L        V+D CAAPGGKT  +   +    +V A D S  RL KL 
Sbjct: 235 SVQDRAAQWVSHLLDPQPGEVVIDACAAPGGKTTHIAELMEDQGRVIACDRSPHRLRKLA 294

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            N DRL L + +I  +D+        + D VL+DAPCS TGT+ RH D  W      + +
Sbjct: 295 QNRDRLGLKSIEIHILDSAAAGDFAAVGDRVLLDAPCSGTGTLHRHADARWRPLKRRLGE 354

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q +LL     +VKP G++V++ CSL+  ++E  +Q+ L   P              
Sbjct: 355 LLPLQAQLLATVSQWVKPYGLLVYATCSLEPAENEAQIQQFLAHHPQW-------HIEPP 407

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +  +  +PEGWI + P   +        MDGFF V LRR
Sbjct: 408 PPNFPLKAAPEGWITVWPQQQD--------MDGFFMVRLRR 440


>gi|81428305|ref|YP_395305.1| putative rRNA methytransferase (sun protein) [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609947|emb|CAI54994.1| Putative rRNA methytransferase (sun protein) [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 447

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 106/465 (22%), Positives = 197/465 (42%), Gaps = 44/465 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R ++  +L+ + ++       LD     +    L+ +D   +  +V   ++    
Sbjct: 2   PNKTPRYLAVEILTAIAKQNSYSNLALDQVINKNR---LNPQDAGFLTQLVYGVIQHEYT 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +D  L   +     +    ++Q+LR +V Q +YLD V ++A+   A E AK+   +   +
Sbjct: 59  LDYYLAPFIQKP-KKMDNWVRQVLRTAVYQQVYLDRVPEHAIFYEATEIAKKM-GHAGVS 116

Query: 122 KLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACIS 174
           KLV +ILR++ R  +  L  IA           +P+W   +L+   G +++ ++      
Sbjct: 117 KLVTAILRQLQRSGLPDLNAIADPIERLSVQYSVPQWLVAKLQADLGDDKLESLLATINQ 176

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWWVQ 226
           P    L V   + T    L  +      ++        L      + S   F  G + +Q
Sbjct: 177 PANASLRVNTRVNTVDAILAELQPQFNDLQPSQIAKVGLVAQGGHLASGALFEAGDYTIQ 236

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRC 281
           D S+ +            VLD CAAPGGKT  +        G ++TALD+   ++  +  
Sbjct: 237 DESSMLVAPSLDIQPGDQVLDACAAPGGKTTHMATYLDAQRGGQITALDIHDHKVRLIEQ 296

Query: 282 NLDRLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           N  RLH+      +        +   +  FD +LVDAPCS  G +RR P++ ++R   D+
Sbjct: 297 NAKRLHVEDVVSAQALDARKVGEQFGEAHFDKILVDAPCSGLGLMRRKPEIKYSRQPADL 356

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           +     Q  +L      +K GG + +S C++  +++++VV   + + P   E+ P+    
Sbjct: 357 MNLQRIQLAILDAVAPTLKVGGRLTYSTCTIVPEENQQVVAAFVANHP-EFEIEPVPLEL 415

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             + + A       +++I PD  +         DGFF   L+R  
Sbjct: 416 PLAQNQASP-----FVQIYPDDYQ--------TDGFFIACLKRRA 447


>gi|312143910|ref|YP_003995356.1| sun protein [Halanaerobium sp. 'sapolanicus']
 gi|311904561|gb|ADQ15002.1| sun protein [Halanaerobium sp. 'sapolanicus']
          Length = 444

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 115/456 (25%), Positives = 201/456 (44%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N R      L+ V  K    T LLD    +       QRD+ L   I    +R    +D
Sbjct: 2   TNLRTKIIEALARVE-KGSYSTLLLDSFLQEIT----DQRDKNLFTEIFYGVIRNKLYLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++      SL +    +   LR+ + Q+L+LD +   A +  +VE  K   +N+  A  
Sbjct: 57  HIIKHFSNKSLEKMDKEVLLGLRIGIYQLLFLDKIPARAAIYESVEAVKLMLKNKGAAAF 116

Query: 124 VNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN ILR V+R+  +          L+  +     PEW  +R  + YG E+   I  A   
Sbjct: 117 VNGILRNVNRKIDQVSIIPREKSPLKHFSIKYSYPEWMIKRFIDQYGIEKAEKIIKAGNK 176

Query: 175 PLYI---DLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQ 226
              +     ++K   + +   L    L      +          + V    F +G  ++Q
Sbjct: 177 RAEVIYRHNSLKMSKQEFLRSLKREGLDFKETFVPGFYNLLNANNPVDTEVFKKGGAYIQ 236

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
             SA +   L     ++ VLDL AAPGGKT  L   + +   + ALD++  RL  ++ N+
Sbjct: 237 GTSAGLASLLLEPKEDMDVLDLAAAPGGKTTHLAMLMENTGHIKALDINPTRLNLIKENM 296

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            RL +    + + DA +Y  +K +D +L D PCS  G I   P++ W +   DI   A  
Sbjct: 297 QRLGVKNVSLEKADAAEYQSEKKYDRILADLPCSGLGLISAKPEIKWQKKEKDIKNMAKL 356

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L   IS +K  G++++S C+L +++++ +++++L  +   +EL+ LN        +
Sbjct: 357 QYEILNNNISKLKSEGMLLYSTCTLTREENQLLIERILTENK-SLELLDLNKKIKNITGL 415

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
              +   G++ I P ++          +GFF   L+
Sbjct: 416 E--IKSNGYVEILPGLI--------NSEGFFYALLK 441


>gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 445

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 204/460 (44%), Gaps = 38/460 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR ++  +L  +   +     LL      S    L++ D+ L   +VN  LR+ 
Sbjct: 1   MTT---ARELALQVLQSLETGKQQSDTLLHRSLHHS---TLNRADRALSTGLVNGVLRYR 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D V+       L +    ++ +LR+ V QIL+L+ V D+A V+  V+ A++ K  R 
Sbjct: 55  LQLDFVIAQFYHHKLEKAAPIMKNILRLGVYQILFLNKVPDWAAVNECVKLARKYKGER- 113

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            +KLVN +LR+++ E + L + +         A     P+W  ER    YG E+  A+  
Sbjct: 114 MSKLVNGVLRKITPESVTLDEWLKEKKNEEQLAVKYSHPQWLVERWSAAYGNEKSEALLS 173

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL-------PGFAEGVW 223
                      +   ++  A +  +       +  +   ++I          P   +G  
Sbjct: 174 YNNQFPSFGFRIN-RLKNSAGRFFSDPAMAAVMHEESGIDNIFLSKDFNAFEPAVIDGRL 232

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQ+ + ++   L       +VLDLCAAPGGK   +   + +  ++TA+D  +++LEK+ 
Sbjct: 233 TVQNPTQALACLLLHPAPGSNVLDLCAAPGGKATFMAELMENRGQITAVDRYEQKLEKIE 292

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            + + L +     +  DA  + P+   DA+L+DAPC+ TG + R  ++ W  + + + + 
Sbjct: 293 SHAEALGITIIKTVMEDARSFMPEIHPDAILLDAPCTGTGVLGRRAELRWKLNPEMLQEL 352

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q +LL      +   GI+V++ CS++ +++   +   LR  P       +     + 
Sbjct: 353 LVLQAELLDHAAELLDENGILVYATCSIEPEENNLQIYSFLRRHPDF-----IADPVGEH 407

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +      S EG        +  + G   G DG F   LR+
Sbjct: 408 LPEQFRQSNEGC-----GAILTLPGEHPGFDGGFCQRLRK 442


>gi|188579790|ref|YP_001923235.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001]
 gi|179343288|gb|ACB78700.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001]
          Length = 438

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 172/443 (38%), Positives = 240/443 (54%), Gaps = 11/443 (2%)

Query: 3   SGMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
            G+ AR V+   ++ ++   + ++L   L      +    L   +  L RAI   + R L
Sbjct: 2   PGLAARHVAREAVATLVGPARGLALEDALAQAARGAR---LEPGEAALARAIATASFRRL 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             I A L   L   LP  +  L  LL    AQIL L VAD+A VDL+V  AK D + +H 
Sbjct: 59  GFIQAALAARLRDGLPENRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHL 118

Query: 121 AKLVNSILRRVSREKIELL--QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           A LVN++LRR+ RE+  +   +        P+W   R    YG+    AI+ A +    +
Sbjct: 119 APLVNAVLRRIVRERDAIRAEETDPLAHNTPDWLARRWRAAYGEAAARAIATAHLEGAAV 178

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
           DLT+  D E WA +L  V L  G +RL E  E++  LPG+AEG WWVQDA+A++PV+L  
Sbjct: 179 DLTLARDPEIWAERLGGVRLDLGSVRLVEAREAVADLPGYAEGAWWVQDAAAALPVRLLA 238

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
            ++   V DLCAAPGGKTAQ+  +GA VTA+D S  RLE+L  NL+RL L AE +   DA
Sbjct: 239 PVSGERVADLCAAPGGKTAQIAAAGAAVTAIDRSAGRLERLGRNLERLGLTAEVV-TTDA 297

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                   FDAVL+DAPCS+TGT+RRHPDV WT+   D+ +    QR+LL +     +PG
Sbjct: 298 LALPEDTPFDAVLLDAPCSATGTLRRHPDVAWTKSETDVFRLVGLQRRLLDKAARLTRPG 357

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+  CSL+ ++    +   L   P   E + +     +    A  + P G +R  P 
Sbjct: 358 GRLVYCTCSLEPEEGSGQIADFLNRHPN-FERIAITPD--RVAGHAELIDPSGDLRTLPS 414

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
            L    G + G+DGFFA  LRR 
Sbjct: 415 HLAGGTGRAGGLDGFFASLLRRK 437


>gi|296877028|ref|ZP_06901070.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431972|gb|EFH17777.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parasanguinis ATCC 15912]
          Length = 437

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 199/455 (43%), Gaps = 38/455 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             MNAR     +L  V          L      S    LS +D+  V  +V  T+     
Sbjct: 4   KQMNAREQIVRVLEEVFEHGAYSNIALKKTLEHSQ---LSDKDRSFVTEVVYGTVARKIT 60

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ++  L  V+     +    +  LL +S+ Q++YLD + D+A+V+ AV  AK  K      
Sbjct: 61  LEWYLSHVIE-DRTKLDPWVYYLLMMSLYQLVYLDRIPDHAIVNEAVRIAKSRK--EGSE 117

Query: 122 KLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           K VN+ILR+                +R +    +P W  + L   YG+ER  AI  +   
Sbjct: 118 KFVNAILRKLLREGLPAVDTIKRKNKRYSVQYSLPVWLVKALIEEYGEERACAIFKSLYQ 177

Query: 175 PLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                I +    + E  A +L A         L +      +   F EG   +QD S+ +
Sbjct: 178 RNKSSIRVVDLSEKEKLAQELEASASLIASSALVKDQGHFAAHSLFKEGRITIQDESSQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-Y 289
                    +  VLD CAAPGGKT  +   ++  KVTALD+   +L+ ++ N +RLH+  
Sbjct: 238 VAPALDLQGDEWVLDACAAPGGKTTHIASFLTTGKVTALDLYDHKLKLIQENANRLHVAD 297

Query: 290 AEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                ++DA           FD VLVDAPCS  G IRR PD+ + +++ D V     Q  
Sbjct: 298 KILTKKLDATRVFETFGPDAFDKVLVDAPCSGIGLIRRKPDIKYNKESVDFVSLQAIQLA 357

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      V+ GGI+V+S C++  +++ EVV + L+S P   E VPL+            
Sbjct: 358 ILDSVCQSVRKGGIIVYSTCTIIGKENFEVVDRFLKSHPN-FEQVPLDHK-------RKD 409

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +     I ITP++ E         DGFF    +R+
Sbjct: 410 ILENNCILITPELYES--------DGFFISCFKRI 436


>gi|326793335|ref|YP_004311155.1| sun protein [Marinomonas mediterranea MMB-1]
 gi|326544099|gb|ADZ89319.1| sun protein [Marinomonas mediterranea MMB-1]
          Length = 452

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 206/457 (45%), Gaps = 33/457 (7%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             ++AR  +  +++ V+ ++ SL+  L    G   F         L++       R  P 
Sbjct: 9   PSLSAREAAVEVITQVLLQQGSLSTQLSKIQGKVDFDH-----HALLKEFCFGVCRHFPT 63

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++++   +L      + Y +   L + + Q+ ++   D+A ++ +VE  +  K++    K
Sbjct: 64  LNSIALSLLAKPFEERDYDVYSTLLLGLYQLQHMSTPDHAAINESVELCRTLKKD-WATK 122

Query: 123 LVNSILRRVSREKIELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI 178
           L+N++LRR  R+  E++  I+        +P+W  +R++  +  +   +I +A      +
Sbjct: 123 LINAVLRRYQRDSEEIISEISSQPSVAFNLPKWLVKRIKKNWP-DSFESIVEASNERPPM 181

Query: 179 DLTVKFD---IETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            + V  D    ET+   L+   +              E P  +  LP F  G   +QD +
Sbjct: 182 CIRVNLDKVSRETYKSWLDEEGIVSRETLSIDSGLYIENPVPVFVLPKFESGFVSIQDEA 241

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           A +  ++        VLD CAAPGGKT      +   ++TA+++   RLE++  NL RL 
Sbjct: 242 AQLSARIINPQQGERVLDACAAPGGKTGHLLEAMPNQELTAIELEPWRLERIEDNLTRLG 301

Query: 288 LYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
             AE I     D  ++  K  F+ VL+DAPCS+TG IRR+PD+   R   DI +    Q 
Sbjct: 302 YQAELIVSDAGDLNNWWDKTAFNKVLLDAPCSATGVIRRNPDIKINRKPADISELVEIQS 361

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            LL      V+ GG ++++ CS+  +++ E V + L  +   +E VPLN+          
Sbjct: 362 TLLDNVWQVVEEGGYLLYATCSIMPEENSEQVDRFLARTSNALE-VPLNTINSGFAMNIS 420

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +  I++ P           G DGF+    ++  
Sbjct: 421 NAKTDHGIQLLP--------KRDGHDGFYYCLFQKTA 449


>gi|99079930|ref|YP_612084.1| Fmu (Sun) [Ruegeria sp. TM1040]
 gi|99036210|gb|ABF62822.1| Fmu (Sun) [Ruegeria sp. TM1040]
          Length = 424

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 140/434 (32%), Positives = 211/434 (48%), Gaps = 23/434 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  LL  V+ +      LL  E        L   D+   + +    LR L R D V
Sbjct: 11  ARRAAVALLDKVLGEG-----LLLSECQTQILERLEPADRARAQRLALQVLRALERADRV 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   L          ++  LR+   ++     A + VV+  V    R + +     LVN+
Sbjct: 66  LAKHLRKPP---ALHVRNALRLGTVELC-SGGAAHGVVNDIVNLVARHRRHGQLKGLVNA 121

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           +LR+V+ E      ++  +  +P+W +  L   +G + +LAI  A      +DL+ K   
Sbjct: 122 VLRKVATEGPGEWAKL-RVPRLPKWLRAPLVQAWGSDAMLAIEAAHFKGAPLDLSAKPGA 180

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           +     L   M PTG +RL++    + +LPG+ +G WWVQDA+A++P QL        VL
Sbjct: 181 D--LAALEGAMTPTGSLRLQDA-GQVSALPGYEQGAWWVQDAAAALPAQLLNAARGERVL 237

Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           DLCAAPGGKT Q+  +GA+VTA+D+S+ RL +L+ NL R  L A  +       +  K  
Sbjct: 238 DLCAAPGGKTLQMAAAGAQVTAVDISENRLARLQENLTRTGLSATVVA---GDVFEQKGQ 294

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +DAVL+DAPCS+TGTIRRHPD+   +D          Q ++L      V+PGG +V+  C
Sbjct: 295 YDAVLLDAPCSATGTIRRHPDLPHAKDGAGFGGLIELQAQMLAHAWGLVRPGGRLVYCTC 354

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL   + E  V+ +L   P       L S           ++ EG +R+ PD   +I   
Sbjct: 355 SLLPDEGECQVEDMLEMFPGARIGDRLKSLSGID---PSWITEEGGLRLRPDYWAEI--- 408

Query: 427 SSGMDGFFAVALRR 440
             GMDGF+   L +
Sbjct: 409 -GGMDGFYMAELVK 421


>gi|294618612|ref|ZP_06698151.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1679]
 gi|291595131|gb|EFF26469.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1679]
          Length = 445

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 192/466 (41%), Gaps = 46/466 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++   L  V +       LL+     S    L+Q+D  L   ++  T+   
Sbjct: 1   MKKS--VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N  
Sbjct: 56  RLLEFYVAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIA-------GISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR   R+    LQ IA           +P W  +RL +  G E    +  + 
Sbjct: 114 TGKFVNGVLRNYQRQGAPDLQGIADPIERLSFKISLPLWMTKRLVDQIGYEETEKLGLSL 173

Query: 173 ISPLYIDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
             P +    V     +           ++ A         +      + S   F +GV  
Sbjct: 174 YQPSHASARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT           G +V ALDV + +++ +
Sbjct: 234 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 293

Query: 280 RCNLDRLHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  RL +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D
Sbjct: 294 EDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPD 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++      Q ++L      +K  GI+ +S C++ K+++++VV   L   P    +  L +
Sbjct: 354 ELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTN 413

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +S         E  + + P             DGFF   LR+ 
Sbjct: 414 PMLQSSI------EEKMLTLYPHQFY--------TDGFFICCLRKK 445


>gi|266624677|ref|ZP_06117612.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           hathewayi DSM 13479]
 gi|288863456|gb|EFC95754.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           hathewayi DSM 13479]
          Length = 442

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 110/456 (24%), Positives = 204/456 (44%), Gaps = 31/456 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +G ++R +   +L  ++ K      +L      S ++ L ++++  +  IV  T+ + 
Sbjct: 1   MTNGNSSREIILDILLEILEKGSYSHIVLSQAL--SKYQYLDKQERAFISRIVEGTVEYT 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D V++      + + K  ++ LLR+SV QILY+D V D AV + AV+ A++ K    
Sbjct: 59  LQLDYVINSYSSVKVKKMKPVIRTLLRMSVYQILYMDRVPDSAVCNEAVKLAQKRKFT-G 117

Query: 120 FAKLVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
               VN +LR +SR K +      +    +P W  +  ++ YG+E  ++++ A + P   
Sbjct: 118 LKGFVNGVLRGISRNKEQLKWPDDSVRYSMPSWILDMWKDTYGEEITVSMAKAFLKPSRT 177

Query: 179 DLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            +    +  +    ++              +  +      + + SL  FA G+  VQD S
Sbjct: 178 AVRCNLNRASKQEIMDSLKSQGVTVEETPLSETVLYLSKYDYLESLDAFASGLISVQDMS 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRL 286
           +S   ++         +D+C APGGK+  +         VT  D++++++  +  N+ R 
Sbjct: 238 SSFVGEIADPKEGDVCIDVCGAPGGKSLHIADKLKGTGMVTVRDLTEQKVALIEENIARS 297

Query: 287 HLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                     D    D   +   D VL D PCS  G I R PD+ +    + + + A  Q
Sbjct: 298 GFTNIRAEVHDALVPDQAWEGRADIVLADLPCSGLGIIGRKPDIKYRMTMEQLAELAALQ 357

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R++L    S+VKPGG +++S C++D Q++EE     L + P       +N        + 
Sbjct: 358 REILSVVQSYVKPGGKLIYSTCTIDSQENEENAAWFLENFPFDA----VNLEGKLGETLN 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A    G I++ P +           DGFF  A ++
Sbjct: 414 AASMKSGMIQLLPGI--------HPCDGFFIAAFQK 441


>gi|187933697|ref|YP_001885416.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721850|gb|ACD23071.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           botulinum B str. Eklund 17B]
          Length = 438

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 194/457 (42%), Gaps = 41/457 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++  +L  V+ +      +L  E  +     L +RD+ L+  IV   LR    +D
Sbjct: 1   MNCRNLAVKILKRVIDEGAYSNIILSNELNE---ANLEERDKALLTEIVYGVLRRKKTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++   +   +    + +  +LRV++ Q+ +LD V  YA  + AV++AK+   +    KL
Sbjct: 58  LIIANFV-RDIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKI--SPEAGKL 114

Query: 124 VNSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR  S++          +   A       W    L   YG++    I         
Sbjct: 115 VNGILRNFSKDPDDITINGNKINEYAYKFSFEPWMIRLLIKQYGEDLAKKIMVGLNQIPQ 174

Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             + V      +                        L +   SI   P F +G   VQD 
Sbjct: 175 TTVRVNDTKCEYNEVFEKLEEIGYCVEEGFMCPEAILIKGGSSIQENPLFKDGEITVQDE 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDR 285
           SA +   L    N++ VLDLC+APGGKT  +     +  +V A D+ + +L  ++ N +R
Sbjct: 235 SAMLVAPLLELENDMKVLDLCSAPGGKTTHIAELLQNTGEVRAFDLHESKLGLIKENCER 294

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L    I   DA           D VL+D PCS  G IR+ P++ W +  +++ +    
Sbjct: 295 LDLNNVKIEVGDATKLNADLVSYADRVLIDVPCSGLGIIRKKPEIKWNKTRENLREIIPV 354

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR+++     ++K GG++++S C+L+K+++EE ++  L +              +   + 
Sbjct: 355 QREIMNNAWEYLKNGGVMIYSTCTLNKEENEENIEWFLNTHKDCKL-----KTIFIGKED 409

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  G + I P+           MDGFF   L +
Sbjct: 410 NLIYNKNGTLTILPNA---------KMDGFFVAKLEK 437


>gi|281492501|ref|YP_003354481.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376165|gb|ADA65656.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 424

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/452 (25%), Positives = 193/452 (42%), Gaps = 37/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    NAR  +  +L+ +          LD    DS    LS  D+  V A+V   +   
Sbjct: 1   MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKAFVTALVYGVVSKK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  +   L           + LL ++V QIL++D V   A VD AV+ AKR    + 
Sbjct: 56  DLLEWHITPFLKKEPK---PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKRRDG-QA 111

Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177
            A  +N++LR   R +    +         +P+   +++   +G +R   I ++   P +
Sbjct: 112 TANFINAVLRNFMRSEHRNEEPRDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           + L         +    +++  +    L     +      F  G   +QD ++ +     
Sbjct: 172 VSLRKIDPTVEISGTRASLLTESA---LIADSGNFAMTEEFQSGRITIQDETSQLVAPQL 228

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
                  VLD CAAPGGK+  +        +TALD+   +L+ +  N +R H+       
Sbjct: 229 DLEGTEEVLDACAAPGGKSTHMAQYLTSGHITALDLYDHKLDLINQNAERQHVADKITTQ 288

Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           + DA     +     FD +LVDAPCS  G IRR PD+ + +++ D V     Q ++L   
Sbjct: 289 KADATMIFEEFGSDKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFVDLQKIQLEILNSA 348

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K  GI+V+S C++  +++ +VV++ L S P   E V ++S     I        EG
Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVRQFLESHPN-FEQVEISSDKADMI-------KEG 400

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            I ITP+M           DGFF    +++ +
Sbjct: 401 CIFITPEMY--------HTDGFFIAKFKKIGE 424


>gi|254461752|ref|ZP_05075168.1| rRNA methyltransferase RsmB [Rhodobacterales bacterium HTCC2083]
 gi|206678341|gb|EDZ42828.1| rRNA methyltransferase RsmB [Rhodobacteraceae bacterium HTCC2083]
          Length = 423

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 141/427 (33%), Positives = 225/427 (52%), Gaps = 20/427 (4%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL  V+ +   L+  L    G      L+  D+   + + + TLR L R+D ++   L  
Sbjct: 15  LLEQVLGEGKMLSEAL----GAPYMLRLAYDDRARAQRLASETLRSLERVDRIMKPFLRK 70

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
             P    ++  +LR++  ++     A + VV+ AV     +K       L N++LR+V  
Sbjct: 71  PPP---LAVHNVLRIATYELC-TGGAAHGVVNDAVSSVGANKRTEKLKGLTNAVLRKVVD 126

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
           +  E   ++  +  +P+W +  L   YG E +  I     +   +DLT K D +  +  +
Sbjct: 127 KGPEEWAKL-RVPRLPKWLRAPLAQAYGHEGIGDIERMHFTGAPLDLTPKGDAKALSEAV 185

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
             V+LPTG +R+K+  + + +L G+  G WWVQDA+A++PVQ+       +++DLC APG
Sbjct: 186 AGVVLPTGSVRIKDAVQ-VSALAGYDAGDWWVQDAAAALPVQILHPQKGEAIIDLCCAPG 244

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313
           GKT QL  SGA VTA+D S RR++++R NL+R  L AE +   DA +      +DAVL+D
Sbjct: 245 GKTMQLAASGANVTAVDSSDRRMQRVRENLERAKLSAELV-VGDALETS--GRYDAVLLD 301

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS+TGTIRRHPD+   +D  +  +    Q ++L   I+ +KPGG +VF  CSL   + 
Sbjct: 302 APCSATGTIRRHPDLPLVKDGSEFGELIELQAQMLSHAITLLKPGGRLVFCTCSLLPDEG 361

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E  ++ +L   P   EL     A  +       ++ EG +R+ PD   +      GMDGF
Sbjct: 362 ECQIEDLLAIHP---ELEIDRDALKRDGIEDAWITEEGGLRLRPDYWAE----QGGMDGF 414

Query: 434 FAVALRR 440
           +   LR+
Sbjct: 415 YIALLRK 421


>gi|121999099|ref|YP_001003886.1| sun protein [Halorhodospira halophila SL1]
 gi|121590504|gb|ABM63084.1| 16S rRNA m(5)C-967 methyltransferase [Halorhodospira halophila SL1]
          Length = 429

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 199/453 (43%), Gaps = 40/453 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R+ + H+L  V+ +  +L   L+     + F  +S+R++ L++A+V   LR+L
Sbjct: 1   MST--PPRVAAVHVLERVLERGETLDEALE-----AQFSRVSERNRSLLQALVYGALRWL 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R++A +  +      R    L+ LL +   +   L    +A V  AV+ A R       
Sbjct: 54  TRLEAQVATLTPRDDWRADPLLRGLLVIGAWEAQGLATPAHAAVSEAVDAA-RRLRRARA 112

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           A +VN++LR++ +         A    +P W  + L   + ++   A+++A  +   + L
Sbjct: 113 AGMVNAVLRKLHKATPPGPADEAARYALPPWLLDHLRRAWPEDW-PAVAEAGNAHPPMTL 171

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLK---------ELPESIVSLPGFAEGVWWVQDASAS 231
               +  +    L ++                     P  +  LPGFAEG   VQD +A 
Sbjct: 172 RFDRNRISREACLQSLAEQEIPAHPGEVAPSAATLHAPVPVARLPGFAEGWLSVQDEAAQ 231

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLY 289
           +   L        VLD CAAPGGKT  L+       VTALD S RRL ++R NL R    
Sbjct: 232 LAAPLLDPQPGDRVLDACAAPGGKTLHLLEHTPTAAVTALDRSSRRLRQVRDNLARGGYE 291

Query: 290 AED--IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A+       D   +   + F  +L+DAPC+ +G IRRHPD+ W R  DD  + A  QR L
Sbjct: 292 AQCLAADAADPEAWWDGEPFQRILLDAPCTGSGVIRRHPDIKWLRGVDDPARMAAAQRHL 351

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      + PGG ++++ CS+  +++E+VV   L              A    +      
Sbjct: 352 LAALWRVLAPGGRLLYATCSIFPEENEQVVAGFLAEHAD---------AKPGPLAPVGRC 402

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  G  +I P           GMDGFF   L R
Sbjct: 403 TGSGC-QILPG--------EHGMDGFFYACLER 426


>gi|291542594|emb|CBL15704.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
           bromii L2-63]
          Length = 446

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/459 (20%), Positives = 184/459 (40%), Gaps = 39/459 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++ ++L  +  +       L+    ++    LS  D   V A+V   L     +D 
Sbjct: 3   NTRNIALNVLLKIENEGAYSNIALNNAIKENR---LSGVDSSFVSALVYGVLERRITLDY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++       L + +   + +LR+ + Q+L++D V D A V+ +V  AK+ K  +  +  +
Sbjct: 60  IIRSYSKIPLRKIETKTKNILRLGILQLLFMDKVPDSAAVNESVNLAKKHKL-QKSSGFI 118

Query: 125 NSILRRVSREKIELL--------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           N ILR ++R + +          + ++    +PE   +   N YG+     +  +     
Sbjct: 119 NGILRNITRAEDKYTLPDEKDRARYLSVKYSVPENIVKLWVNSYGENNAEQLLASLNGRA 178

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227
            I   V     D +T   KL+   +    I   +         S+  L  +  G++ +QD
Sbjct: 179 KICCRVNTLRTDADTLIKKLSDEGVVAEKIPFIDNALYLENTGSVERLRAYKSGLFHIQD 238

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLD 284
           AS+ + V          +LD+C+APGGK+    Q + +  ++ + D+   +L+ +     
Sbjct: 239 ASSQLCVNFLDAKPRNIMLDVCSAPGGKSFSAAQYMNNRGRIFSCDMFDHKLKLISAGAK 298

Query: 285 RLHLYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           RL +     +  DA          D +L D PCS  G + R P++ + +D       +  
Sbjct: 299 RLGITCISTLLRDASTNDTALPVADRILCDVPCSGLGIMSRKPEIRY-KDDLISNDLSDL 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      +  GG +V+S C+L+  ++ +  ++ L   P     +PL      +   
Sbjct: 358 QYRILCASADNLAVGGKLVYSTCTLNPDENNKNTKRFLEEHPDFY-GIPLKLPNGITRAF 416

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                    I + P           G DGF+     +  
Sbjct: 417 DEEPYE---ITLMPHTC--------GTDGFYISLFGKKA 444


>gi|326407382|gb|ADZ64453.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
           subsp. lactis CV56]
          Length = 424

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/452 (25%), Positives = 193/452 (42%), Gaps = 37/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    NAR  +  +L+ +          LD    DS    LS  D+  V A+V   +   
Sbjct: 1   MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKAFVTALVYGVVSKK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  +   L           + LL ++V QIL++D V   A VD AV+ AKR    + 
Sbjct: 56  DLLEWHITPFLKKEPK---PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKRRDG-QA 111

Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177
            A  +N++LR   R +    +         +P+   +++   +G +R   I ++   P +
Sbjct: 112 TANFINAVLRNFMRSEHRNEEPKDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           + L         +    +++  +    L     +      F  G   +QD ++ +     
Sbjct: 172 VSLRKIDPTVEISGTRASLLTESA---LIADSGNFAMTEEFQSGRITIQDETSQLVAPQL 228

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
                  VLD CAAPGGK+  +        +TALD+   +L+ +  N +R H+       
Sbjct: 229 DLEGTEEVLDACAAPGGKSTHMAQYLTSGHITALDLYDHKLDLINQNAERQHVADKITTQ 288

Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           + DA     +     FD +LVDAPCS  G IRR PD+ + +++ D V     Q ++L   
Sbjct: 289 KADATMIFEEFGSDKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFVDLQKIQLEILNSA 348

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K  GI+V+S C++  +++ +VV++ L S P   E V ++S     I        EG
Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVRQFLESHPN-FEQVEISSDKADMI-------KEG 400

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            I ITP+M           DGFF    +++ +
Sbjct: 401 CIFITPEMY--------HTDGFFIAKFKKIGE 424


>gi|189499780|ref|YP_001959250.1| sun protein [Chlorobium phaeobacteroides BS1]
 gi|189495221|gb|ACE03769.1| sun protein [Chlorobium phaeobacteroides BS1]
          Length = 447

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/455 (23%), Positives = 186/455 (40%), Gaps = 33/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR ++   L     +       L             + D+ L   +VN  LR+  R+D
Sbjct: 1   MKAREIALLTLQETDTQAKKSEQSLHRLLNRHKP---DKNDRSLATELVNGVLRYRLRLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++       L +    L+ +LR+   Q+L+LD +  +A VD  V  A + K  RH A +
Sbjct: 58  FIISLSYHHDLKKAAPVLRNILRLGAYQLLFLDKIPGWAAVDECVSLAVKYKG-RHIAGI 116

Query: 124 VNSILRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LRR++ E            L +R++     PEW  +R    YG+E  +A+  +   
Sbjct: 117 VNGVLRRIASEKGSLDEILKNEPLGRRLSLEYSHPEWLLQRWLKHYGEELTVAMLSSNNR 176

Query: 175 PLYIDLTVKFDIET------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
              + L V     T           +         +     +     P    G+  VQ+ 
Sbjct: 177 APLLSLRVNTLKTTPEIMGKALKDASVTFTKAAPEQFMLTHDFTACEPFIHLGLVTVQNP 236

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           + ++P  L   + + ++LDLC+APGGK   +   + +   + A+D  + + EK+      
Sbjct: 237 TQALPCLLLDPMPDETILDLCSAPGGKATFMAELMKNKGSILAVDRYRNKCEKVMRRAQA 296

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L +   + I  +A  + P K   A+L+D PC+ TG + + PD+ W      + +    Q 
Sbjct: 297 LGISIIETIADNAETFQPDKQPSAILLDVPCTGTGVLGKKPDLRWRITPQQLDELTILQG 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           KLL      + PGG++V++ CS++ ++++  + + L   P                +M  
Sbjct: 357 KLLDHAAGLLNPGGVLVYATCSIEPEENQLQIDRFLERHPDFSRDHSPVPLPVMFSEMPS 416

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           A          P     + G   G DG FA  L +
Sbjct: 417 A----------PGAFITLPGNHEGYDGGFAQRLLK 441


>gi|322374811|ref|ZP_08049325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           C300]
 gi|321280311|gb|EFX57350.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           C300]
          Length = 437

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 205/457 (44%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V+  +      L+     S    LS  D+ LV  IV  T+   
Sbjct: 1   MTKVETARSLALAVLEDVLVNQAYSNIALNKHLKGSQ---LSVADKGLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + ++AVV+ AVE AK  K  + 
Sbjct: 58  LTLEWYLSHFIQ-DRDKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKARK--KG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI  + 
Sbjct: 115 SEKLVNAVLRRILREGWPDIDSIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFKSL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A   P     L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTNLSRKEEIKALLEATDSPLAATGLVKEQGHFAGHDLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  KVTALD+   +L+ ++ N +RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLTSGKVTALDLYDHKLDLIQENAERLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  K  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFEKDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|294675830|ref|YP_003576445.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter
           capsulatus SB 1003]
 gi|294474650|gb|ADE84038.1| ribosomal RNA small subunit methyltransferase B-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 421

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 159/417 (38%), Positives = 226/417 (54%), Gaps = 17/417 (4%)

Query: 25  LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84
           L   L L         L+  D+   + I   TLR L R DA+L   L  + P     L  
Sbjct: 19  LQERLTLAEQAGELAALAPPDRARAQRIALATLRNLTRADAMLKPHLRKAPP---PDLHV 75

Query: 85  LLRVSVAQILYLDVADYAVVDLAVEQAKRDK-ENRHFAKLVNSILRRVSREKIELLQRIA 143
           LLR+   +I  L  A + V D  V  A+    +   FA L+N++LR+++ +     +   
Sbjct: 76  LLRLGTVEICALGEAPHGVTDALVTLARSGGQKTEGFAGLINAVLRKIASDTDRWARLD- 134

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
               +P W + RL + YGK  V+ +  A ++    DL+VK + ETWA KL A +LPTG +
Sbjct: 135 -PPALPGWLRGRLMSAYGKVAVMRMEAAHLAGAPTDLSVKAEAETWAAKLGAELLPTGSL 193

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG 263
           RL +    I  LPG+A G WWVQDA+A++P ++        VLDLCAAPGGKT QL+ +G
Sbjct: 194 RLAQA-GQITELPGYATGDWWVQDAAAALPARVLNAQPGEHVLDLCAAPGGKTLQLLAAG 252

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
           A+VTALDVS  RL++L  NL R  + AE +   DA D+ P   FDA+L+DAPCS+TGTIR
Sbjct: 253 ARVTALDVSAPRLDRLEENLARCGMRAETV-VADALDWTPAAPFDAILLDAPCSATGTIR 311

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           RHPD+ + +D   I + A  Q  LL +   ++KPGG +V++ CSL  ++ E  +   L  
Sbjct: 312 RHPDLPFVKDASGIKELAALQAALLDRAPGWLKPGGRLVYATCSLLPEEGEAQIAAALSR 371

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            P  + LVP+ +           L+  G +R+ PD          G+DGFF   LRR
Sbjct: 372 HPG-LRLVPITAPGLD----PDWLTETGCLRLRPDFW----PDRGGLDGFFIAVLRR 419


>gi|294623688|ref|ZP_06702521.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium U0317]
 gi|291596903|gb|EFF28121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium U0317]
          Length = 445

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 192/466 (41%), Gaps = 46/466 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R ++   L  V +       LL+     S    L+Q+D  L   ++  T+   
Sbjct: 1   MKKS--VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N  
Sbjct: 56  RLLEFYVAPLIAKA-KKVDDWVKMLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN +LR   R+    LQ IA           +P W  +RL +  G E    +  + 
Sbjct: 114 TGKFVNGVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSL 173

Query: 173 ISPLYIDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
             P +    V     +           ++ A         +      + S   F +GV  
Sbjct: 174 YQPSHASARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT           G +V ALDV + +++ +
Sbjct: 234 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 293

Query: 280 RCNLDRLHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  RL +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D
Sbjct: 294 EDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPD 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++      Q ++L      +K  GI+ +S C++ K+++++VV   L   P    +  L +
Sbjct: 354 ELANLPKIQLEILESCAPTLKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTN 413

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +S         E  + + P             DGFF   LR+ 
Sbjct: 414 PMLQSSI------EEKMLTLYPHQFY--------TDGFFICCLRKK 445


>gi|15673871|ref|NP_268046.1| rRNA methylase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724923|gb|AAK05987.1|AE006418_7 rRNA methylase [Lactococcus lactis subsp. lactis Il1403]
          Length = 424

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 113/452 (25%), Positives = 193/452 (42%), Gaps = 37/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    NAR  +  +L+ +          LD    DS    LS  D+  V A+V   +   
Sbjct: 1   MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKAFVTALVYGVVSKK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  +   L           + LL ++V QIL++D V   A VD AV+ AKR    + 
Sbjct: 56  DLLEWHITPFLKKEPK---PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKRRDG-QA 111

Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177
            A  +N++LR   R +    +         +P+   +++   +G +R   I ++   P +
Sbjct: 112 TANFINAVLRNFMRSEHRNEEPKDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           + L         +    +++  +    L     +      F  G   +QD ++ +     
Sbjct: 172 VSLRKIDPTVEISGTRASLLTESA---LIADSGNFAMTEEFQSGRITIQDETSQLVAPQL 228

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
                  VLD CAAPGGK+  +        +TALD+   +L+ +  N +R H+       
Sbjct: 229 DLEGTEEVLDACAAPGGKSTHMAQYLTIGHITALDLYDHKLDLINQNAERQHVADKITTQ 288

Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           + DA     +     FD +LVDAPCS  G IRR PD+ + +++ D V     Q ++L   
Sbjct: 289 KADATMIFEEFGSDKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFVDLQKIQLEILNSA 348

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K  GI+V+S C++  +++ +VV++ L S P   E V ++S     I        EG
Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVRQFLESHPN-FEQVEISSDKADMI-------KEG 400

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            I ITP+M           DGFF    +++ +
Sbjct: 401 CIFITPEMY--------HTDGFFIAKFKKIGE 424


>gi|254447515|ref|ZP_05060981.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium HTCC5015]
 gi|198262858|gb|EDY87137.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium HTCC5015]
          Length = 431

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 192/450 (42%), Gaps = 35/450 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR  +   ++ V ++  SL+  L           L +RD+ L + +   +LR+  R +
Sbjct: 1   MNARQQALRAITSV-QQGQSLSAALPDLLAP-----LPKRDRGLCQELSYGSLRYYHRYE 54

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +   +L      K   LQ +L + + Q+  + + D+A V   V      K++     ++
Sbjct: 55  WLSQQLLKKPFKHKDSDLQAVLALGLYQLFEMRIPDHAAVSNTVALVNGLKKS-WAKGVI 113

Query: 125 NSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R++ E   +IA        +P W    LE  +  +       +   P     
Sbjct: 114 NAVLRNALRQRDEWRGKIADEEAAQHSLPRWLLNFLEGNWPDQWTGIAEASLAKPPMTLR 173

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASASIPV 234
                 + +  +L+A+ +        +   +I        LPGFA+G   VQDA+A    
Sbjct: 174 ISGGARDQYRQRLSALDIECHAPERADWALTITPPVDTDVLPGFAKGEASVQDAAAQWAA 233

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAED 292
            L        VLD CAAPGGKT  ++   +   + ALD+  +RL ++  NL RL   AE 
Sbjct: 234 PLLNPQAGERVLDACAAPGGKTGHMLEWASALDLVALDLEPKRLARVEQNLTRLGRSAEL 293

Query: 293 IIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +     D   +   + FD +L+DAPCS++G IRRHPD+   R  +DI      Q + L  
Sbjct: 294 LSADLRDTARWWNGQAFDRILLDAPCSASGVIRRHPDIKLLRQPEDINALVELQAQCLDA 353

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             S +K GG ++++ CSL K +++  V++ L        L   +      ID        
Sbjct: 354 AWSTLKEGGTLLYATCSLFKAENQHQVREFLERHSDAA-LDAFSETALPGIDTGYGQ--- 409

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +  P             DGFF   LR+
Sbjct: 410 ---QFFPG-------GPFNGDGFFYARLRK 429


>gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15]
 gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15]
          Length = 446

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/458 (25%), Positives = 188/458 (41%), Gaps = 38/458 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  +   L  + +     T  +       A   +S+ D  L   +V  TL     +D
Sbjct: 1   MNVRDAAVTTLLKIGQGGAFSTISVHQMLEKRA---ISKADVGLYTELVYGTLSRELTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L+  L     +    ++ LLR+SV Q+ YLD + D+AV++ AVE AK  +   H AK+
Sbjct: 58  YILEPFLTKQ-KKLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIAKT-RGKPHIAKV 115

Query: 124 VNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           VN +LR V R              RI+  +  P W  +R    +G+E    +      P 
Sbjct: 116 VNGVLRNVLRTGKPDFSAIPSTVDRISIETSHPVWLVKRWLELFGEEETWKMCRLNNEPA 175

Query: 177 YIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
            + + V                  + A         L+ +  S+        G   +QD 
Sbjct: 176 PVTVRVNRTRTDQQEAIVLLEEQGVIAKPAHAAPDGLEIVSGSVQQTDLLERGYLSLQDE 235

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRL 286
           S+ +     G      VLD CAAPGGK   +        + ALD+   +++ L     RL
Sbjct: 236 SSMLVAAALGAQPTDHVLDSCAAPGGKAMHIAEGLATGSLVALDLHPHKVKLLEKQATRL 295

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            L+      +DA           FD +LVDAPCS  G IRR PD+ WT+  +D+ +    
Sbjct: 296 GLHNVQAEALDARQAGTRFETASFDRILVDAPCSGLGVIRRKPDIKWTKRPEDLTQLPVI 355

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR++L   +  VKP G  V+S C++D  ++E+  + +L    +  E             +
Sbjct: 356 QRQILEAVLPLVKPDGTFVYSTCTMDPLENEQQTEFILSQGFVFDETFKTRMPEA----V 411

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +     +++ P  L        G DGF+  A +++
Sbjct: 412 QSLIGERAELKLLPTSL--------GTDGFYIAAFKKM 441


>gi|56698200|ref|YP_168572.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56679937|gb|AAV96603.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 423

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 215/443 (48%), Gaps = 25/443 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  S   AR  +  LL  ++ +      LL    G  A   L   ++   + +   TLR 
Sbjct: 1   MADSATQARQSAIDLLDQILGEGR----LLSECLGAGALDRLPPEERARAQRLTLDTLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L R D +L   L  + P    S++  LR+   ++ + + A + VV   VE   R + +  
Sbjct: 57  LERADRLLKPHLQKAPP---LSVRNALRLGTVELAHGE-AAHGVVHSMVEIVGRSRRHGR 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              LVN++LR+V+ +      R+  +  +P W ++ L   +G   V A+  A      +D
Sbjct: 113 LKGLVNAVLRKVAADAPSAWGRL-RVPRLPRWLRDPLVQAWGAPAVAAMEAAHFVGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           LT+K        ++                  + +LPGFA G WWVQDA+A++PVQL   
Sbjct: 172 LTLKSGASAPGGEVLPTGSVR-----LHDAGQVSALPGFAAGDWWVQDAAAALPVQLLDP 226

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
               SVLDLCAAPGGKT QL  +GA+VTALD+S+ R+ ++R NL R  L AE ++     
Sbjct: 227 QPGESVLDLCAAPGGKTMQLAAAGARVTALDISEGRMARVRENLARTGLSAETVV---GD 283

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  +DAVL+DAPCS+TGTIRRHPD+   +D  +       Q +++    + V+PGG
Sbjct: 284 ALEQGGQYDAVLLDAPCSATGTIRRHPDLPLAKDGSEFGALIELQAQMIAHAWTLVRPGG 343

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +VF  CSL   + E  V++ L   P    +    +A          ++ EG +R+ PD 
Sbjct: 344 RMVFCTCSLLPDEGEVQVEEALTLYPD---MSTDRAALGLPGIDPAWITEEGGLRLRPDY 400

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
             +      GMDGF+   LR+  
Sbjct: 401 WSE----RGGMDGFYMAVLRKAA 419


>gi|315612653|ref|ZP_07887565.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           sanguinis ATCC 49296]
 gi|315315240|gb|EFU63280.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           sanguinis ATCC 49296]
          Length = 437

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 205/459 (44%), Gaps = 38/459 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS+ D+ LV  IV  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFINQAYSNIALNKHLKGSQ---LSEADKSLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + ++AVV+ AVE AK  K  + 
Sbjct: 58  LTLEWYLSHFIE-DRDKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKERK--KG 114

Query: 120 FAKLVNSILRRVSREKI-------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI  + 
Sbjct: 115 SEKLVNAVLRRILREGWSDIDSIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFKSL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +      E     L A   P     L +          FAEG   +QD S+
Sbjct: 175 LVRNKASIRVADLSRKEEIKAVLEATDSPLAATGLVKEQGHFAGHDLFAEGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  KVTALD+   +L+ ++ N +RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLTSGKVTALDLYDHKLDLIQENAERLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFSRDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +  +G I ITP++         G DGFF    R++ +
Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKISE 437


>gi|259047043|ref|ZP_05737444.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
 gi|259036093|gb|EEW37348.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
          Length = 440

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 123/461 (26%), Positives = 200/461 (43%), Gaps = 48/461 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R +   LL+ V + +   T              L  RD+ L+  +   T++    +D 
Sbjct: 3   NVRDICVELLTNVEKNQAYSTVAFQNVLQKHK---LDVRDRGLLTELFYGTIQRKLTLDF 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     + +  +  LLR++V Q+ YLD V D+A +  AV+ AK+ + ++  AK V
Sbjct: 60  YLKPFIEKQ-KKMELWVLSLLRMTVYQMAYLDRVPDHAAIFEAVQIAKK-RGHQGIAKFV 117

Query: 125 NSILRRVSREKIE-------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N +LR V R   +         +R++    +P W  E L   YG E    I  +     +
Sbjct: 118 NGVLRNVQRSGFDGVSSIKDERERLSVEFSMPRWIVELLFEQYG-EVAREIFPSLNIAPH 176

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDAS 229
           +   ++     +E     L    +     +L           ++    F +G+  VQD S
Sbjct: 177 LSARIQNPEMSVEEVQTLLREEGVMVQESKLSPRAVIVKEGDLLGSKAFKDGIVTVQDES 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLD 284
           +S+  Q+    +   VLD CAAPGGKT           G  V ALD+ + +L K+  N  
Sbjct: 237 SSLVAQVGKLQHGDKVLDTCAAPGGKTTHFASYLVAEEGGLVEALDLHENKLRKIHQNAK 296

Query: 285 RLHLYA-EDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           RL +        +DA        K+ FDAV VDAPCS  G +RR PD+ +T++++D+ K 
Sbjct: 297 RLGVEDRIHTHALDARKVGELFEKESFDAVFVDAPCSGLGLMRRKPDIKYTKNSEDLTKL 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L    + VK  G +++S C+++K ++EEVV K L + P   EL P+       
Sbjct: 357 QIIQLEILASVATMVKNSGKLIYSTCTINKSENEEVVLKFLANHP-DFELQPIEEF---- 411

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  +    + I P             DGFF   + R 
Sbjct: 412 ----GCTNENPMLTILPHEY--------HTDGFFIARMVRK 440


>gi|89092289|ref|ZP_01165243.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
           MED92]
 gi|89083377|gb|EAR62595.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
           MED92]
          Length = 432

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 210/456 (46%), Gaps = 42/456 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R +++  L+ +++ + SL           A      +D+ L+R +   TLR+ 
Sbjct: 1   MTK--NIRTLAAQALTPLLQNKGSLNTKYPAIERRCA-----DKDRGLLRELCYGTLRYY 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ VL  +       K   ++ L  V + QI +  +  +A +   VE  K   +    
Sbjct: 54  PQLNRVLQLLQNRPFKYKDIDVRALALVGLYQIQHTRIPAHAAIHETVEACKELNKP-GA 112

Query: 121 AKLVNSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           AKL+N+ILRR  RE+ ++        + +    EW   +L+N +  +   AI +A     
Sbjct: 113 AKLLNAILRRFQREQDDITSELKGEDSYLYNHSEWMIAKLKNNWP-DHWQAILEANNEQA 171

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDA 228
            + L V       E +  +LN V+     +   +        ++ SLPG+  G + VQD 
Sbjct: 172 PLTLRVNRRSISREEFQQQLNPVIDSDPTVFSDQGLRLAESVNVESLPGYQVGAFSVQDE 231

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDR 285
           +A +   L        VLD CAAPGGK   ++ S      V A+++  +R E++  NL R
Sbjct: 232 AAQLSADLLDLKPQQRVLDACAAPGGKLCHILESEPKLASVEAVELEAKRAERIEENLKR 291

Query: 286 LHLYAE-DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L L A   I +     +    L+D +L+DAPCS+TG IRR+PD+ + R  +DI + A  Q
Sbjct: 292 LRLKATLHIGDASEQSWWDGDLYDRILLDAPCSATGVIRRNPDIKFLRKGEDIHELAQIQ 351

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             +L    + +KPGG ++++ CS+  Q++E  +++ + ++     L         +ID +
Sbjct: 352 SDILANCWAMLKPGGKLLYATCSIFPQENERQIKRFISNNSDAKHL---------AIDAS 402

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +  E   ++ P           G DGF+   L +
Sbjct: 403 WGIEREFGRQLFP--------EKGGHDGFYYALLEK 430


>gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
 gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
          Length = 437

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 194/460 (42%), Gaps = 49/460 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G ++R V++  +  V+ +  SLT  L           LS  D+ L +AI    +R+LP
Sbjct: 6   STGAHSRAVAAQAIHAVLEQGQSLTQALTTYSE-----QLSAEDKRLAQAISYGVMRYLP 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +   +   L   L  K   +Q LL V   Q+  L   D+A V   VE +K  K  +  +
Sbjct: 61  VLTEKVSGKLDKPLKGKNQIIQSLLLVGTYQLFKLRTKDHAAVSATVEASKLLKR-KALS 119

Query: 122 KLVNSILRRVSREKIELLQRIAGIS------IIPEWFKERLENFYGKERVLAISDACISP 175
            LVN +LR+V RE                    P W +E++   YG E+  A+  A  S 
Sbjct: 120 GLVNGVLRQVLREAPTRNDDGERELPSAEGGNHPRWLREKIRAAYG-EKAEAVFTANDSQ 178

Query: 176 LYIDLTV---KFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQ 226
             + L       ++  +   L    +                P  +  LP F  G   VQ
Sbjct: 179 PPLWLRANRRHTNVTDYTALLAENGIEAVADSQASDAIRLVKPVPVTKLPHFEAGWVSVQ 238

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D SA +   +        VLD CAAPGGKT            + A+DV ++RLE++  NL
Sbjct: 239 DRSAQLAADMVDAQPEHRVLDCCAAPGGKTVHLLERTEFQTPLIAIDVDEQRLERVSENL 298

Query: 284 DRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            R  L         +D   +  K+ FD +L+DAPCS+TG IRRHPD+ W R + DI +  
Sbjct: 299 YRADLSCEVVCADVLDLDSWWDKQPFDRILLDAPCSATGVIRRHPDIKWLRRSSDIDQLV 358

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+ +L +    +KPGG ++++ CS+  +++ E +   L        L+ + +      
Sbjct: 359 ELQQSMLERLWPTLKPGGQLIYATCSILPEENSEQISHFLGQH-SDANLIAIEANRP--- 414

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      +++ P          +  DGFF   + +L
Sbjct: 415 ----------MLQLLPG--------ENDGDGFFYAKIEKL 436


>gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           siraeum 70/3]
          Length = 439

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 196/462 (42%), Gaps = 45/462 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+   AR ++  LL  +  +      +LD  +  +      +RD+    A+    L   
Sbjct: 1   MKT---ARQITLDLLIRMDTQGAYSNIILDHAFTQNDA---DRRDKAFSAALFYGVLERR 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D ++ +       + K ++ ++LR+   Q+L+++ V D A V+ +V         + 
Sbjct: 55  MTLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTK- 113

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
               VN+ILR   R + ++           +     P+W  ++  +  G++R + + ++C
Sbjct: 114 AKGYVNAILRTFLRNEKQIDYGNLTGEAKLSIEYSCPKWLVKKWNSELGEQRAMQMINSC 173

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVW 223
                I   V       +    +L +  +      L +        + I     + +G++
Sbjct: 174 FGRPPIYARVNTVRYAVDDVIGELESEGISAAKNSLIDACIELANTKGIEQSSAYKKGMF 233

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            +QD S+ I  ++   + N +V+DLC+APGGKT      +    ++ + D+   ++  + 
Sbjct: 234 HIQDISSQICCKIAAPMFNETVVDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIA 293

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
               RL L      E DA  + P     D V+ D PCS  G IRR P++ + +    +  
Sbjct: 294 NTAKRLGLTIITAAENDATKFNPDIPKADRVVCDVPCSGLGVIRRKPEIKY-KPMKQLET 352

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               QRK++     +VKPGG +V+S C++ + +++++V + L+     V +V        
Sbjct: 353 LPDTQRKIINNAAEYVKPGGTLVYSTCTVSRTENDDIVDEFLKEHSDFVPVV-------- 404

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            + + +    +G+ R                DGFF   LR++
Sbjct: 405 -VPLNIKGLEDGYKRTM-------LPCDVNGDGFFTATLRKV 438


>gi|221135270|ref|ZP_03561573.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola sp. HTCC2999]
          Length = 442

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 204/457 (44%), Gaps = 36/457 (7%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M S  G   R  ++ +L  ++ K +S    L              RD+  ++ +V   LR
Sbjct: 1   MSSPLGQQLRADAAWVLFQILEKGVSSKQALAQRLEHYQ-----GRDRAWLQEMVFGCLR 55

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            LP +   L  +L   L  +K  L+ L+ + + QI Y  V+++A V   V  A   K   
Sbjct: 56  TLPTLQFWLRGLLDKPLKGRKKILEHLILIGLYQIAYSRVSEHAAVSETVGAADLLKGTT 115

Query: 119 HFAKLVNSILRRVSREKIELLQRI--AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
               L+N+ILR   RE +        A  + +P W  + + N Y +   L I ++     
Sbjct: 116 -LKALINAILRTFIREDVANTAPESLAAQAGMPNWIFKAINNHYAEHAQLVIDESNQKAP 174

Query: 177 -YIDLTVKF-DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
            ++ +       E    +L A+ + T                 +   PG+ +G + VQD 
Sbjct: 175 LWLRVNPAHISPEGMQTQLQAMGIDTELKNTHPDAVQCLKSGDVTQFPGYDKGWFAVQDG 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDR 285
           +A +  QL        VLD CAAPGGKTA ++ S  +     A+D    RL ++  NL R
Sbjct: 235 AAQLAAQLLDVQPGHRVLDCCAAPGGKTAHILASQPELEECVAIDNDPSRLVRVEENLAR 294

Query: 286 LHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L   A  I     D   +   + FD +L+DAPCS+TG IRRHPD+ W R   DI      
Sbjct: 295 LGHEATLICAAAEDVEGWYGGEPFDRILLDAPCSATGVIRRHPDIRWLRQASDIAPLVAI 354

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +LL+Q    ++PGG ++++ CS+  +++ + +Q  +   P  V L P+ ++  +    
Sbjct: 355 QAELLMQMWQILQPGGKLLYATCSILPEENSQQIQTFIAQHPEAVVL-PIPTSLSELT-- 411

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              ++ E  +++ P   +        MDGF+   L++
Sbjct: 412 --TVNDEFGLQVLPGDAD--------MDGFYYTLLQK 438


>gi|307704312|ref|ZP_07641230.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK597]
 gi|307622148|gb|EFO01167.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK597]
          Length = 437

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 202/457 (44%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFINQAYSNIALNKHLKGSQ---LSVADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YL+ + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK--VRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAQAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLGRKEEIQALLEASDSSLSPSGLVKEQGHFADHDLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         N  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGNEQVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFGQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VV+  L + P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLENHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|220925067|ref|YP_002500369.1| sun protein [Methylobacterium nodulans ORS 2060]
 gi|219949674|gb|ACL60066.1| sun protein [Methylobacterium nodulans ORS 2060]
          Length = 448

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 171/446 (38%), Positives = 231/446 (51%), Gaps = 16/446 (3%)

Query: 2   KSGMNARLVS----SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
            +G+ AR ++    + LL    R    L  +LD          L  +D  L RAI   T 
Sbjct: 9   TAGLAARRLAHASVADLLGA--RSGTVLDDVLDPAAAR---ASLGAQDLGLARAIAAATF 63

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
           R L  I   L   +   LP  +  L  LL    AQILYL+V D+A VDL+V  AK +   
Sbjct: 64  RHLGVIRHALAARMTQGLPEDQPRLLALLATGAAQILYLNVQDHAAVDLSVRIAKNEAAL 123

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGIS---IIPEWFKERLENFYGKERVLAISDACIS 174
           RH + LVN++LRR++RE+  + Q           P W   R    +G     AI++A + 
Sbjct: 124 RHLSGLVNAVLRRIAREQAAIRQEGDADPLGLGTPAWLARRWSAAHGAATARAIAEAHMR 183

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
              +DLTVK D ETWA +L A +LPTG +RL +    +  L G+  G WWVQDA+A++P 
Sbjct: 184 GAPLDLTVKADPETWAERLGARLLPTGSLRLDDARTPVPQLAGYDSGAWWVQDAAAALPA 243

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           +L        V DLCAAPGGKTAQL  +GA V A+D S+ RL +L  NL RL L A +  
Sbjct: 244 RLLAVRPGERVADLCAAPGGKTAQLAAAGAAVVAVDRSEARLRRLSENLARLGL-AAETR 302

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
            +DA        FDA+L+DAPCS+TGTIRRHPDV WT+   D+ + A  Q KLL +    
Sbjct: 303 AVDALTLPDDDQFDAILLDAPCSATGTIRRHPDVAWTKREGDLPRLAALQGKLLDKAARL 362

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           ++PGG +V+  CSL+ ++ E      L        L     A  +       +S  G +R
Sbjct: 363 LRPGGRLVYCTCSLEPEEGEAQADAFLARHSDFARL---PIAAEEVGGETGFVSERGDLR 419

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
             P       G   G+DGFFAV LR+
Sbjct: 420 TLPSHWPDAAGGRGGIDGFFAVRLRK 445


>gi|293364893|ref|ZP_06611610.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037]
 gi|307703146|ref|ZP_07640092.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           oralis ATCC 35037]
 gi|291316343|gb|EFE56779.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037]
 gi|307623221|gb|EFO02212.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           oralis ATCC 35037]
          Length = 437

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 206/459 (44%), Gaps = 38/459 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V+  +      L+     S F   S  D+ LV  IV  T+   
Sbjct: 1   MTKVETARSLALAVLEDVLVNQAYSNIALNKHLKGSQF---SAADKGLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + ++AVV+ AV+ AK  K  + 
Sbjct: 58  LTLEWYLSHFIQ-DRDKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVDLAKARK--KG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI  + 
Sbjct: 115 SEKLVNAVLRRILREGWPDIDSIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFKSL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A   P     L +          FAEG   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEAADSPLAATGLVKEQGHFAGHDLFAEGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  KVTALD+   +L+ ++ N +RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLTSGKVTALDLYDHKLDLIQENAERLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFGRDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +  +G I ITP++         G DGFF    R++ +
Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKISE 437


>gi|160880621|ref|YP_001559589.1| sun protein [Clostridium phytofermentans ISDg]
 gi|160429287|gb|ABX42850.1| sun protein [Clostridium phytofermentans ISDg]
          Length = 453

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 206/468 (44%), Gaps = 46/468 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR +   +   +   ++    +++    +  ++ LS++D+  +  +    L    R+D
Sbjct: 1   MNAREIVLTMCLKINEDKLPSHVVINETLKN--YKDLSKQDRAFISRLCLGVLEQKLRLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             L+      + + K  ++ +LR++  QI +++ + D A  D AV+  K+       +  
Sbjct: 59  YDLERFSKIKVKKMKPVIRNVLRIAAYQIEFMEQIPDSAACDEAVKLVKKRGLG-GLSGF 117

Query: 124 VNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACI 173
           VN ILR +SRE  +               +    +P+   E     + +E+V  +  A +
Sbjct: 118 VNGILRNLSREFQKANGFDISKLNEIERLSYQYSMPKELVEFWLKSFRREQVEEMLQAFL 177

Query: 174 SPLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGVWW 224
            P    + +     T    ++ +                +      S+  L  F +G + 
Sbjct: 178 EPKDTSIRINESKITIDELVDNLVKDGVEVRDGAYLTNAKRITSYNSLPVLDSFQKGYFQ 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---------IVSGAKVTALDVSKRR 275
           VQD S+ +   + G      ++D+CAAPGGKT              +   V A D + R+
Sbjct: 238 VQDESSMMVGLIAGIKAGDYIIDVCAAPGGKTLHAADLLLVAGGEKNPGHVDARDKTDRK 297

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  +  NL+R+      +   DA       K+  D +L D PCS  G I + PD+ +   
Sbjct: 298 VALIEQNLERIGYQNVSVKVFDALVPDDSVKEKADIILADLPCSGLGVIGKKPDIKYNMT 357

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + + + A  QR +L   +S++KPGG+++FS C+++ +++E+ ++ +  +    ++L P 
Sbjct: 358 KEMMSELAKLQRNILTVVVSYLKPGGVLIFSTCTINPEENEDNIRFITET----LKLQPE 413

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +   +   ++    S +G++++ P+         SG+DGFF    R++
Sbjct: 414 SIDTYLPENLQCETSKQGYLQLLPN--------KSGVDGFFISRFRKV 453


>gi|254420361|ref|ZP_05034085.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3]
 gi|196186538|gb|EDX81514.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3]
          Length = 445

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 159/440 (36%), Positives = 234/440 (53%), Gaps = 19/440 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+ AR+V+  LL+  + KR  L   L       A R L   D+   RA+    LR L  I
Sbjct: 24  GVEARVVAGILLNAALEKRNGLDEALSQ----PAARALEPVDRAFARAVAMAALRRLGEI 79

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D +L+  L  S P    +++ L+R+++AQ L L+   +A V  AV+ A+RD + R +  L
Sbjct: 80  DQILNRRLQKSPPE---AVRTLMRIALAQTLVLETPAFAAVSTAVKLAERDPKTRPYKNL 136

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           VN++LR V R+   L       S +P+W   R +  YG+  +  ++ A       DL++K
Sbjct: 137 VNAVLRGVGRDGPGLTTA---ESNLPDWIAARWKATYGEAALTGLALAAREEPATDLSLK 193

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELP-ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
             ++  A           G  ++      + + PGF +G WWVQDA+A++P +L G    
Sbjct: 194 PGVDPAAVAAAVEGEALEGGTVRTGRRGDVATWPGFDDGDWWVQDAAAAVPGRLLGVKPG 253

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            + LD+CAAPGGKT QL  +GA V ALD S  RL++L  NL+R  L AE I    A D+ 
Sbjct: 254 ETALDMCAAPGGKTLQLAAAGASVVALDRSAPRLKRLSQNLERTGLTAEVIAVP-AEDWE 312

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FDAVL+DAPC++TGT RR+P+VL      ++ K A  Q +LL      VKPGG +V
Sbjct: 313 DDRSFDAVLLDAPCTATGTFRRNPEVLRATKPAEVAKLADVQHRLLDAAAERVKPGGRLV 372

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CSL++++ E  V   LR +P    +    +A         AL+PEGW+RI P M  +
Sbjct: 373 YCTCSLEREEGETQVIAFLRRNPGFRTVAADPAALGAP---PEALTPEGWLRILPSMWAE 429

Query: 423 IDGVSSGMDGFFAVALRRLI 442
                 G+DGFFA  L R+ 
Sbjct: 430 ----HGGLDGFFAAKLERIA 445


>gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           butyricum 5521]
 gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           butyricum 5521]
 gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 438

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 202/457 (44%), Gaps = 41/457 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++  +L+ V+ +      +L  E  +     L+ +D+ L+  IV   LR    +D
Sbjct: 1   MNCRKLAVKILNRVLNEGAYSNIILSKELNEV---ELNDKDKALLTEIVYGVLRRKRTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++   +   +     ++  +LRV++ Q+ +LD +  YA  + AVE+AK   EN   +KL
Sbjct: 58  VIIANFV-KDIKLMDKNILNILRVAIYQMNFLDKIPTYAACNEAVEEAKEISEND--SKL 114

Query: 124 VNSILRRVSREKIELLQR------IAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR  ++   ++          A       W    L   YG+     I     +   
Sbjct: 115 VNGILRSFTKNPDDINVPGNKIDEYAYKFSFEPWMIRLLIKQYGENVAKKIMSGLNTIPK 174

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + + V     D +    KL  +        +          +SI + P F EG   VQD 
Sbjct: 175 VSIRVNELNSDYDEVYEKLEEMEYEISEGVICPEAINIKGGKSIENNPLFKEGKITVQDE 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285
           SA +   L      ++V+DLC+APGGKT  +     +  KV A D+ + +L  ++ N +R
Sbjct: 235 SAMLVAPLLDLKEGMTVVDLCSAPGGKTTHIAEILGNTGKVLAFDLHESKLGLIKENCER 294

Query: 286 LHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +        DA     + +   D VL+D PCS  G IR+ P++ W +  +D+ +    
Sbjct: 295 LGITNVTTFAQDATKLNAELVASTDRVLLDVPCSGLGIIRKKPEIKWNKKRNDLREIIPV 354

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR+++     ++K GG++++S C+L+K+++EE ++  + +              +     
Sbjct: 355 QREIMNNAWQYLKQGGVMIYSTCTLNKEENEENIEWFVNNHEDCEV-----KRIFVGKQD 409

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  S EG + + P+           MDGFF   L +
Sbjct: 410 NLVYSREGLLTVMPN---------ENMDGFFIAKLEK 437


>gi|126736247|ref|ZP_01751990.1| rRNA methyltransferase RsmB [Roseobacter sp. CCS2]
 gi|126714413|gb|EBA11281.1| rRNA methyltransferase RsmB [Roseobacter sp. CCS2]
          Length = 424

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 150/441 (34%), Positives = 231/441 (52%), Gaps = 20/441 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +G+ AR  + HLL  +  +      L+    G  A   L   D+   + +   TLR 
Sbjct: 1   MTQTGLPARRSAHHLLMQITGEGR----LMAELIGGGALARLENDDRARAQRLATETLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L R D +L   L  + P     +   LR+ V ++     A + VV+  VE   R+K  + 
Sbjct: 57  LDRADRMLKPYLKKTPPD---HVMNALRLGVIELC-SGEAAHGVVNAYVEIVARNKRTQA 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              L N++LR+++ E  E   + A I + P W ++ L   +G++ V A+  A  +   +D
Sbjct: 113 MKGLTNAVLRKIAAEGPEGWNKRA-IPLTPGWLRQPLVAAWGRDAVAAMEAAHFAGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           L+VK D    A  L+  +LPTG +RL+     + +L G+A G WWVQDA+A+IPV+L G 
Sbjct: 172 LSVKVDAAAVAKALDGTVLPTGSVRLQNA-GQVSTLKGYATGDWWVQDAAAAIPVKLLGD 230

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           +  L VLDLCAAPGGK  QL   GA+VTA+D+S++R+E++  NL R+ L A+ ++     
Sbjct: 231 VTGLKVLDLCAAPGGKAMQLAALGAQVTAVDISEKRMERIGENLTRVGLKADCVVSDAFT 290

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FDAVL+DAPCS+TGTIRRHPD+ + +D  +       Q  ++   ++ +KPGG
Sbjct: 291 FEQDG--FDAVLLDAPCSATGTIRRHPDLPYAKDGSEFGALIDQQEAMIDHALTLLKPGG 348

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +VF  CSL   + E   ++ L   P    L     A   +      ++ EG +R+ PD 
Sbjct: 349 RLVFCTCSLLPDEGEVQAEEALARHPG---LTIDADALRINGVNPDWITDEGGLRLRPDY 405

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
              I     GMDGF+   +R+
Sbjct: 406 WADI----GGMDGFYMAVMRK 422


>gi|293553676|ref|ZP_06674300.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1039]
 gi|291602251|gb|EFF32479.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1039]
          Length = 452

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 191/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+    LQ IA           +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           ++ A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306

Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L +    +K  GI+ +S C++ K+++++VV   L   P    +  L +   +S 
Sbjct: 367 KIQLEILERCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   E  + + P             DGFF   LR+ 
Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|222153508|ref|YP_002562685.1| ribosomal RNA small subunit methyltransferase [Streptococcus uberis
           0140J]
 gi|222114321|emb|CAR43000.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus uberis 0140J]
          Length = 440

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 206/459 (44%), Gaps = 38/459 (8%)

Query: 1   MKSGMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M +     AR  +   +  +          L+        + L+ +D+ L+  IV  T+ 
Sbjct: 1   MANNWKREARGKALMAIEDIFDNGAYSNLALNQHLNH---QALNAKDKALITEIVYGTVS 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
               ++  L  V+     R    +  LL +S+ Q+LYLD V  +A+V+ AV  AK    N
Sbjct: 58  RKLTLEWHLSHVIE-DRNRLDKWVYYLLMISLYQLLYLDKVPQHAIVNDAVNIAKNRGNN 116

Query: 118 RHFAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           R   K VN++LR+++              +R + +  IP W   +L + +G+ER L I +
Sbjct: 117 RGAEKFVNAVLRQLTNHPLPDPSLIKRKNKRYSILYSIPTWLVIKLIDQFGEERALKIME 176

Query: 171 AC--ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           +    S + + +     +E     L+A M       L +    +     F  G   +QD 
Sbjct: 177 SLSLNSKISLRVINLDKMEIIKEALDAEMSLLSPCGLTKENGYMALHDFFQRGDITIQDE 236

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           S+ +         N  VLD C+APGGKT+ +   +   KV ALD+ + +L+ +R N +RL
Sbjct: 237 SSQLVAPTLAIQENDIVLDACSAPGGKTSHMASYLKTGKVVALDIHEHKLDLVRENAERL 296

Query: 287 HLY-AEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            L    +   +DA           FD +LVDAPCS  G IRR PD+ + +D  D+ +   
Sbjct: 297 GLSEKIETRLLDARQVHEVFGPDSFDKILVDAPCSGIGLIRRKPDIKYNKDLQDLKQLQA 356

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      ++ GGI+ +S C++  +++ +V+++ L+  P   ++        K   
Sbjct: 357 VQLEILSSVCQTIRKGGIITYSTCTIFDEENVQVIKRFLKEHPNFEQI--------KLKH 408

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +  +G + ITP+  +         DGFF   +RR+
Sbjct: 409 TQAEIVKDGCLVITPEQFQ--------TDGFFIAQIRRV 439


>gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 436

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 103/459 (22%), Positives = 193/459 (42%), Gaps = 43/459 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R ++   +  ++  +     +++    ++    L++ D+ L   +V  TL+  
Sbjct: 1   MTIETNVRALAFETIQDIINDKAYSNIIINDVLSNN---ELNRADKGLYTELVYGTLKRK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + + L      ++QLL +S+ Q +YLD + ++A+++ AVE AK  K   H
Sbjct: 58  YTLDYLLKPFVQTKLKG---WVRQLLWMSIYQYVYLDKIPEHAIINEAVEIAK-YKGGPH 113

Query: 120 FAKLVNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN ILR + R  +          +RIA    +P+W  +     +G E+   I+ + 
Sbjct: 114 NGNVVNGILRNIMRSDLPDFTEITDDKKRIAIEYSLPKWLVDHWTTHFGIEKTETIAQSF 173

Query: 173 ISPLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
           +  +   + V                             L    + I+    F +G+  +
Sbjct: 174 LDKVTTTVRVNLTRISVDDAIRRLTDDYIVEQDREIETCLHISGKPIIESRMFKDGLISI 233

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282
           QD S+    +L        VLD C+APGGK   +         V A D+ + +++ +  N
Sbjct: 234 QDKSSMFIGELMALKEGDQVLDACSAPGGKACHIAEILNGTGHVDATDIHEHKIDLIDFN 293

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           + +L L      E DA +   K ++D +LVDAPCS  G +R  P++ + +    I     
Sbjct: 294 IRKLRLSNISAFEHDATEKYDK-VYDKILVDAPCSGLGVLRHKPEIKYEQSQHAIESLVE 352

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      VKPGG +++S C++++ ++E VV   L+ +             +   +
Sbjct: 353 IQLEILNNVKYNVKPGGTMIYSTCTIEQMENENVVYTFLKENKDF---------EFDQFE 403

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +       ++I P             DGFF   +RR 
Sbjct: 404 HPITGEKVKTMQILPQDF--------NSDGFFITRIRRK 434


>gi|331266904|ref|YP_004326534.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis
           Uo5]
 gi|326683576|emb|CBZ01194.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis
           Uo5]
          Length = 437

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 127/459 (27%), Positives = 204/459 (44%), Gaps = 38/459 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  IV  T+   
Sbjct: 1   MTKVETARNLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAPDKGLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + ++AVV+ AVE AK  K  + 
Sbjct: 58  LTLEWYLSHFIE-DRDKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVEIAKARK--KG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI  + 
Sbjct: 115 SEKLVNAVLRRILREGWPDIATIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFKSL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A   P     L +          F EG   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEATDSPLASTGLVKEQGHFAGHDLFFEGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   +   +VTALD+   +L+ ++ N++RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLRTGQVTALDLYDHKLDLIQENVERLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTKKLDARKVHEFFGRDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +  +G I ITP++         G DGFF    R++ +
Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKISE 437


>gi|309798767|ref|ZP_07693031.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           infantis SK1302]
 gi|308117584|gb|EFO54996.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           infantis SK1302]
          Length = 437

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARNLALKVLEDVFVNQAYSNIALNKHLKGSQ---LSATDKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +SV Q+ YLD   D+AVV+ AVE AK  K  + 
Sbjct: 58  LTLEWYLSHFIE-DRDKLDNWLYVLLLMSVYQLQYLDKLPDHAVVNEAVEIAKSRK--KG 114

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGLPDIAVIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +      S   F+EG+  +QD S+
Sbjct: 175 LKRNKASIRVTDLSRKEEIKALLGASDSHLSPAGLVKEQGHFASHDLFSEGLITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD    +L  ++ N  RL +
Sbjct: 235 QLVAPTLELQGDEQVLDACAAPGGKTAHMASYLTTGQVTALDFYDHKLTLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++     FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFGNDQFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VVQ  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +   G I ITP++         G DGFF    R++
Sbjct: 407 KDIVKNGCILITPELY--------GSDGFFISQFRKI 435


>gi|322388304|ref|ZP_08061908.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
 gi|321140976|gb|EFX36477.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
          Length = 437

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 128/457 (28%), Positives = 203/457 (44%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARNLALKVLEDVFVNQAYSNIALNKHLKGSQ---LSATDKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +SV Q+ YLD   D+AVV+ +VE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDKLDSWLYILLLMSVYQLEYLDKLPDHAVVNESVEIAK--LRKKG 114

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGLPDIASIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174

Query: 173 ISP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           +      I +T     E     L+A         L +          F+EG+  +QD S+
Sbjct: 175 LQRNKASIRVTDLSRKEEIKKMLDASDSALSASGLVKEQGHFAGHDLFSEGLITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +            VLD CAAPGGKTA +   ++  +VTALD+   +L  ++ N +RL +
Sbjct: 235 QLVTPTLDLQGEEQVLDACAAPGGKTAHMASYLTTGQVTALDLYDHKLTLIQENAERLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  K  FD +LVDAPCS  G +RR PD+ + +DT D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFGKDQFDKILVDAPCSGIGLLRRKPDIKYNKDTADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VVQ  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|163849994|ref|YP_001638037.1| Fmu (Sun) domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163661599|gb|ABY28966.1| Fmu (Sun) domain protein [Methylobacterium extorquens PA1]
          Length = 425

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 165/422 (39%), Positives = 236/422 (55%), Gaps = 9/422 (2%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
           + ++L   L           L   +  L RAI   + R L  I A L   L   LP  + 
Sbjct: 9   RGLALEDALAQAAR---GAGLDAGEAALARAIATASFRRLGFIKAALAARLRDGLPEDRP 65

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140
            L  LL    AQIL L VAD+A VDL+V  AK D + +H   LVN++LRR++RE+  +  
Sbjct: 66  HLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHLVPLVNAVLRRIARERDAIRA 125

Query: 141 RIAG--ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML 198
           + +       P+W   R +  YG+E    I+ A +    +DLTV  D + WA +L  + L
Sbjct: 126 QESDPLAHNTPDWLARRWQAAYGEEAARRIAVAHLEGAAVDLTVPHDPDIWAERLGGIRL 185

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
             G +RL E+ +++  LPG+AEG WWVQDA+A++PV+L   ++   V+DLCAAPGGKTAQ
Sbjct: 186 DLGSVRLAEVRQAVAELPGYAEGAWWVQDAAAALPVRLLAPVSGERVVDLCAAPGGKTAQ 245

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           +  +GA VTA+D S  RLE+L  NL+RL L AE +   DA        FDAVL+DAPCS+
Sbjct: 246 IAAAGAAVTAVDRSAVRLERLGRNLERLGLSAEVV-TADALALPEDAPFDAVLLDAPCSA 304

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           TGTIRRHPDV+WT+   D+++ A  QR+LL +     +PGG +V+  CSL+ ++    V 
Sbjct: 305 TGTIRRHPDVVWTKSEADVIRLAGLQRRLLDKAARLTRPGGRLVYCTCSLEPEEGSAQVA 364

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             L  +P   E + +     +    A  +   G +R  P  +    G + G+DGF+A  L
Sbjct: 365 AFLARNP-DFERIAITPD--RLSGHAELIDASGDLRTLPSHVVGGIGRAGGLDGFYASLL 421

Query: 439 RR 440
           RR
Sbjct: 422 RR 423


>gi|310828894|ref|YP_003961251.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
 gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
          Length = 441

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 109/466 (23%), Positives = 186/466 (39%), Gaps = 57/466 (12%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R  +   L  V R+            G++ ++   + D+ L   IV  TL+    +D
Sbjct: 1   MKIREQAVKTLLRVSREGAYSNLETKKVLGENHYK---EEDRGLYLNIVYGTLQNKLYLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L   +   L +    + ++LR++V QI +LD +  YA V+ +VE   R K        
Sbjct: 58  YLLKKHISKDLNKLDPEVLEILRIAVYQIYFLDKIPSYAAVNESVEITGRIK--PKARGF 115

Query: 124 VNSILRRVSREKIELLQRI-----------AGISIIPEWFKERLENFYGKERVLAISDAC 172
           VN +LR + R K                  +    IP W   +    +G E+   I    
Sbjct: 116 VNGVLRNILRSKETDEAFDFSSFSNEKEALSVRYSIPVWIIHKYYETFGAEKAEKIIPLL 175

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSL----------PGFA 219
                  +       D  T   KL+   +      L      +  L          P F 
Sbjct: 176 NEKPPFTIRANTLKVDRNTLEEKLSDKGIYCEKGALDCDALHLSHLGGFENQVQCDPLFT 235

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRL 276
            G + +QD  A    +L G      VLD+CAAPGGKT     ++ +   + A D+   RL
Sbjct: 236 AGCFMIQDQGAMKAARLLGPEKTDRVLDMCAAPGGKTTHLSQIMENEGTIIARDIFDSRL 295

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           + +     RL +   +  + D   + P+    FD +L+DAPCS  G IRR P++ +T   
Sbjct: 296 KLIEETAARLGICNIETEKTDGCIFRPEDREAFDRILLDAPCSGLGIIRRKPEIRYTITK 355

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
               +    QR+LL   + ++KPGG +V+  C+++  ++E  +++V +  P  + +  ++
Sbjct: 356 KARKELVRIQRQLLDHAVQYLKPGGTLVYCTCTVNSDENERQIERVQKDYP-FMRIEAVS 414

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          E  I  +P        +  G D FF   L++
Sbjct: 415 EG-------------ENSIHTSP--------LDDGCDCFFMAKLKK 439


>gi|307708280|ref|ZP_07644747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis NCTC 12261]
 gi|307615726|gb|EFN94932.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis NCTC 12261]
          Length = 437

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 206/457 (45%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+  +  S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFINQAYSNIALNKHFKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--VRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAQAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A   P     L +          F+EG   +QD S+
Sbjct: 175 LVRNKASIRVTDLGRKEEIQVLLEASDSPLSVFGLVKEQGHFAGHDLFSEGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +            VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGGEQVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                + ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQMQKLDARKVHEFFGQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VVQ  L S P   ++   +          
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEFEQVTLEHEC-------- 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|268611642|ref|ZP_06145369.1| sun protein [Ruminococcus flavefaciens FD-1]
          Length = 443

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 108/461 (23%), Positives = 183/461 (39%), Gaps = 47/461 (10%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  LL    R        LD    +S    LS +D+    A+    +     +D +
Sbjct: 4   PRYTAVKLLDKTFRSGSYSNIQLDAGLKNS---DLSPQDKRFCTALYYGVIERKITLDHI 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  +    L +    +  +LR  + Q+LY++ V D A V+ +V+ AK+  +    + +VN
Sbjct: 61  LTGLSSRPLSKLDSIIITILRCGIYQLLYMENVPDNAAVNESVKLAKKFGKT-SASGMVN 119

Query: 126 SILRRVSREKIELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           ++LR   R+  +         R++    IP    E + N YG E    +    +      
Sbjct: 120 AVLRNFIRKGKKYDMSKNEIERMSVEYSIPAELIESVVNDYGMENAKDLFVDSLGEAPTF 179

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE---------------LPESIVSLPGFAEGVWW 224
           + V    +  A +    +   G     E                  ++ S   F  G++ 
Sbjct: 180 IRVNNIGDDEADEDREFLEKWGDRSFFEKSPLLPHCYKVNDKVGLYNLESNDMFIMGLFH 239

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRC 281
           VQD ++ +         N  VLD+CAAPGGKT  +        ++ A D+ K R+  +  
Sbjct: 240 VQDLASQLCCAAVAPTENDIVLDMCAAPGGKTFTMAEMMDGKGQIYAFDLHKHRVGLIEE 299

Query: 282 NLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
              RL L        D    Y        +L D PCS  G IR+ P++ + +   D  + 
Sbjct: 300 GAARLELSNVKAEARDATKYYDDIPKATKILCDVPCSGYGVIRKKPEIRY-KSISDFERL 358

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q K+    ++++  GG +V+S C++ K ++E+VVQ++L + P  +EL  L       
Sbjct: 359 PEIQYKIAENALNYLADGGEMVYSTCTVRKAENEDVVQRLLANHP-ELELAELPQPLG-- 415

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++   G   I P           G DGFF   LRR 
Sbjct: 416 -----SVFSGGMAAIFPHHF--------GSDGFFIAKLRRK 443


>gi|114571463|ref|YP_758143.1| Fmu (Sun) domain-containing protein [Maricaulis maris MCS10]
 gi|114341925|gb|ABI67205.1| Fmu (Sun) domain protein [Maricaulis maris MCS10]
          Length = 433

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 155/428 (36%), Positives = 229/428 (53%), Gaps = 14/428 (3%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
            VM++R +L   L+       F  +S RD+   RAI   T R L +   VL+ +L   L 
Sbjct: 17  AVMKQRRTLEAALEHT---PEFAAMSDRDRAFARAITATTFRRLGQTRTVLNGLLSRPLH 73

Query: 77  RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                 Q LL     Q+L++D A +AVV   VE A    + R    L+N++LRRV RE  
Sbjct: 74  ETSEGAQALLITGATQLLWMDGAPHAVVSSTVELADARSDARKLKGLINAVLRRVDREGR 133

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV--KFDIETWAHKLN 194
           E L+       +P+W ++     YG   +  +++A      +DLTV      E WA  L+
Sbjct: 134 ERLKPTLPRDNLPDWLRDSWRAAYGPGTLSRMANAITVAPPLDLTVKDPDTREHWARALD 193

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           A +LP G +R ++    + +LPG+ EG WW QDA+A+IP  L       SV+DLCAAPGG
Sbjct: 194 ATILPNGSLR-RDTVGDVRALPGYREGAWWAQDAAAAIPATLLTLGPGSSVIDLCAAPGG 252

Query: 255 KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDA 314
           KT QL  +GA VTALD+S++RLE++R NL R  L A  +   DA  Y P +  DAVL+DA
Sbjct: 253 KTMQLAATGADVTALDLSEKRLERVRENLGRTGLSATLV-AGDALTYKPAQPVDAVLLDA 311

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PC++TGT+RRHP+  W +  DD  + A  Q +++    + +KPGG +V   CSL  ++ E
Sbjct: 312 PCTATGTLRRHPEAAWIKRADDTGRMARLQDEMIKAAAAMLKPGGQLVLCTCSLQPEEGE 371

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
            +  +V       ++  P+       ++ A  L+P GW+R+TP +  +      GMDGFF
Sbjct: 372 ALAGRVAGRH-RQLKESPIQPDELAGVESA--LTPAGWVRLTPALWAE----QGGMDGFF 424

Query: 435 AVALRRLI 442
                +  
Sbjct: 425 IARFTKRA 432


>gi|261206663|ref|ZP_05921361.1| fmu [Enterococcus faecium TC 6]
 gi|289565024|ref|ZP_06445478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium D344SRF]
 gi|294614916|ref|ZP_06694807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1636]
 gi|260079156|gb|EEW66849.1| fmu [Enterococcus faecium TC 6]
 gi|289163231|gb|EFD11077.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium D344SRF]
 gi|291592202|gb|EFF23820.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1636]
          Length = 452

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 190/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+    LQ IA           +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           ++ A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306

Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +K  GI+ +S C++ K+++++VV   L   P    +  L +   +S 
Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   E  + + P             DGFF   LR+ 
Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|257888654|ref|ZP_05668307.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,141,733]
 gi|257824708|gb|EEV51640.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,141,733]
          Length = 452

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 192/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+    LQ IA           +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           +++A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEISAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLIEENATR 306

Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +K  GI+ +S C++ K+++++VV   L   P    +  L +   +S 
Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +      E  + + P             DGFF   LR+ 
Sbjct: 427 IV------EKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|257899950|ref|ZP_05679603.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
 gi|257837862|gb|EEV62936.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
          Length = 452

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 192/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+    LQ IA           +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           ++ A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPCGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +        +   VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEHEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLIEENATR 306

Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +K  GI+ +S C++ K+++++VV   L + P    +  L     +S 
Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLETHPDFERIDVLTDPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +      E  + + P             DGFF   LR+ 
Sbjct: 427 IV------EKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|225021364|ref|ZP_03710556.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681148|ref|ZP_07403955.1| putative ribosomal RNA small subunit methyltransferase B
           [Corynebacterium matruchotii ATCC 14266]
 gi|224945746|gb|EEG26955.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659353|gb|EFM48853.1| putative ribosomal RNA small subunit methyltransferase B
           [Corynebacterium matruchotii ATCC 14266]
          Length = 491

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/459 (23%), Positives = 167/459 (36%), Gaps = 40/459 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +L  V  +       L     +     L +RD      I   TLR    +D V
Sbjct: 50  ARAVAFDVLYRVNVEGTYANLALPKALTEYR---LKRRDAAFATEITYGTLRVQGILDIV 106

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       L     ++   +R+   Q+LY  V  +A VD AV+       N       N 
Sbjct: 107 IAHCSSRPLDSIDPAVLGAIRLGAYQLLYTRVEPHAAVDSAVKIVAAT-GNEQAKGFANG 165

Query: 127 ILRRVSREKIELLQR----------IAGISIIPEWFKERLENF-YGKERVLAISDACISP 175
           ILR++SR   E              IA     PEW  +  E    G++ + A   A    
Sbjct: 166 ILRKISRTTPEAWWEKLQPADELAAIAFRHAHPEWVAKSFEQALGGRDELDAALAADSER 225

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         +    +G+  VQD  + +
Sbjct: 226 PIVHLVARPGEITAEELALMTGGDEGTYSPYAVYLPGGDPGRIDAVRDGLAAVQDEGSQL 285

Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286
             +               LDLCA PGGK A L       +A  D  + +  + +     +
Sbjct: 286 IARALTEAPLDGPDGGHWLDLCAGPGGKAALLGAIARIESATVDAVEVQPHRAKLVQQTV 345

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +  MD  +   +  FD VLVDAPCS  G +RR P+  W +   DI + A  Q +
Sbjct: 346 RDLPVTVHTMDGRNPSFEYQFDRVLVDAPCSGLGALRRRPEARWRKQESDIAQLAQLQYE 405

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   I+  +PGGI+V+S CS D +++  VV K L + P+      +       +     
Sbjct: 406 LLASAINLTRPGGIIVYSTCSPDLRETRGVVNKALENHPV------VELDAHPLVPNMEN 459

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
              E  +++ P             D  F   L++   P+
Sbjct: 460 TGEEKSVQMWPH--------RHHTDAMFFAVLKK--TPE 488


>gi|328957299|ref|YP_004374685.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
           17-4]
 gi|328673623|gb|AEB29669.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
           17-4]
          Length = 458

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 108/460 (23%), Positives = 194/460 (42%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++  +L    +       L++     +    LS  D  L+  +V   L+    +D  
Sbjct: 16  SRYLAMSILERTDKTGSYSNLLINEAIQKNK---LSAADARLLTELVYGVLQRKLTLDFY 72

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L     +    ++ LLR+S+ Q++YLD +  +A++  AVE AK+ K +   +K +N
Sbjct: 73  LSPFLNED-KKIDIWVRNLLRLSIYQMIYLDKIPVHAILFEAVEVAKK-KGHVGISKFIN 130

Query: 126 SILRRVSREKIELLQRIAGISI-------IPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R     +++IA           +P W  E+     G E    + ++ + P + 
Sbjct: 131 GVLRNADRNGFPSVEKIADPIERLSIELSMPRWLVEKFTADIGLEETKKLGESLLRPSHS 190

Query: 179 DLTVKFDIETWAHKLNAVMLP--------TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     T    L A+              + +        S P F  G   +QD S+
Sbjct: 191 SARVNEKFLTVEEALEAMEEEGFDVRESVISPVGIVSDGGHFASSPLFQSGQLTIQDESS 250

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDR 285
            +         +  VLD CAAPGGKT  +        G KVTALD+ + ++  +  N  R
Sbjct: 251 QLVAPALQLEPHHQVLDACAAPGGKTTHIASYLSAEEGGKVTALDLHEHKVALITENAKR 310

Query: 286 LHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +H+            +       + FD +LVDAPCS  G +RR PD+ +T+   D++   
Sbjct: 311 MHVEDVVTAMKLDARNVDQEFSDEQFDRILVDAPCSGLGLMRRKPDIKYTKKEKDLLNLQ 370

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG++V+S C++  ++++E V+  L +               ++ 
Sbjct: 371 KIQLGILEKVAPKLKVGGLLVYSTCTIANEENKETVENFLAAH------ADFEKVSVRTE 424

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +       +G++++ P           G DGFF   LR++
Sbjct: 425 ESLSGCLKDGFLQLYPHDF--------GTDGFFISCLRKI 456


>gi|69245428|ref|ZP_00603423.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
 gi|257879839|ref|ZP_05659492.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,230,933]
 gi|257891680|ref|ZP_05671333.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,410]
 gi|257894155|ref|ZP_05673808.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,408]
 gi|258614266|ref|ZP_05712036.1| Sun protein [Enterococcus faecium DO]
 gi|260559512|ref|ZP_05831693.1| fmu [Enterococcus faecium C68]
 gi|293563686|ref|ZP_06678127.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1162]
 gi|293570098|ref|ZP_06681178.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1071]
 gi|314938230|ref|ZP_07845530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133a04]
 gi|314943127|ref|ZP_07849925.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133C]
 gi|314949324|ref|ZP_07852666.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0082]
 gi|314952258|ref|ZP_07855272.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133A]
 gi|314992114|ref|ZP_07857564.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133B]
 gi|314996296|ref|ZP_07861352.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133a01]
 gi|68195810|gb|EAN10246.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
 gi|257814067|gb|EEV42825.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,230,933]
 gi|257828040|gb|EEV54666.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,410]
 gi|257830534|gb|EEV57141.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,408]
 gi|260074611|gb|EEW62932.1| fmu [Enterococcus faecium C68]
 gi|291587470|gb|EFF19354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1071]
 gi|291604370|gb|EFF33863.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E1162]
 gi|313589540|gb|EFR68385.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133a01]
 gi|313593328|gb|EFR72173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133B]
 gi|313595600|gb|EFR74445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133A]
 gi|313598135|gb|EFR76980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133C]
 gi|313642426|gb|EFS07006.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0133a04]
 gi|313644273|gb|EFS08853.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium TX0082]
          Length = 452

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 190/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+    LQ IA           +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           ++ A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306

Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +K  GI+ +S C++ K+++++VV   L   P    +  L +   +S 
Sbjct: 367 KIQLEILESCAPTLKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   E  + + P             DGFF   LR+ 
Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|606223|gb|AAA58086.1| we have one ORF, ECFMT has fmu and fmv [Escherichia coli str. K-12
           substr. MG1655]
          Length = 386

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/390 (27%), Positives = 193/390 (49%), Gaps = 25/390 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           SA   +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293

Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  
Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           Q ++L      +K GG +V++ CS+  +++
Sbjct: 353 QSEILDAIWPHLKTGGTLVYATCSVLPEEN 382


>gi|116517030|ref|YP_816997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae D39]
 gi|148984178|ref|ZP_01817473.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae
           SP3-BS71]
 gi|116077606|gb|ABJ55326.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae D39]
 gi|147923467|gb|EDK74580.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800539|emb|CBW33179.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pneumoniae OXC141]
          Length = 437

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREDWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|257882565|ref|ZP_05662218.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,502]
 gi|257818223|gb|EEV45551.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,502]
          Length = 452

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 190/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VAPLIAKA-KKVDDWVKMLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+    LQ IA           +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           ++ A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306

Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +K  GI+ +S C++ K+++++VV   L   P    +  L +   +S 
Sbjct: 367 KIQLEILESCAPTLKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   E  + + P             DGFF   LR+ 
Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|19746552|ref|NP_607688.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS8232]
 gi|19748764|gb|AAL98187.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS8232]
          Length = 440

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 205/451 (45%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  
Sbjct: 9   TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  LL +S+ Q++YLD    +A+V+ AV  AK     +   K VN
Sbjct: 66  LAHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124

Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           +ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S  
Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRAVAIMESLFVRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    +E  A  L+A         L +      +   F  G   +QD S+ +    
Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    + 
Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L  
Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +
Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIIKD 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G++ ITP+  +         DGFF   +RR+
Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581]
 gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581]
          Length = 447

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 176/425 (41%), Gaps = 31/425 (7%)

Query: 31  LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSV 90
               D     +  RD+ L + +   T R LPR++A+   +L      +   +Q LL V +
Sbjct: 36  KSLNDLDEHQVVARDRGLFKELCFGTCRALPRLEALAGKLLEKPFKTRDADIQALLLVGI 95

Query: 91  AQILYLDVADYAVVDLAVEQAK---RDKENRHFAKLVNSILRRVSREKIELLQRIAGISI 147
            Q+LYL V  +A V      A+   +    R     +  + R  +    E+ +  A   +
Sbjct: 96  YQLLYLRVPAHAAVGETAGAARLLSKAWATRVLNGCLRRLQRESTTLLAEVDRDPAVALL 155

Query: 148 IPEWFKERLENFYGKER-VLAISDACISPLYIDLTVKF-DIETWAHKLNAVMLPTGGIRL 205
            P W+ +     +  +   +  ++    P+ + +  +  D E +  +L++          
Sbjct: 156 HPRWWVKAFRQAWPDDWRAICDANNQPGPMTLRVNRRHGDREMYLERLDSPGARLCPHAP 215

Query: 206 K----ELPESIVSLPGFAEGVWWVQDASASIPV----QLFGTLNNLSVLDLCAAPGGKTA 257
                E P  I  LPGF EG   +QD +A +       +        VLD C APGGK A
Sbjct: 216 DGLTLETPCDIAELPGFKEGHVSIQDEAAQLAAVLLGPVIAPRPGARVLDACCAPGGKAA 275

Query: 258 QLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAP 315
            L+      + A+D    RL ++   L RL L A     +    D+     FDA+L+DAP
Sbjct: 276 HLLELFDIDLQAIDSDDARLARVEDTLARLGLSASLAHGDATERDWWDGTAFDAILLDAP 335

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS +G IRRHPD+   R   DI K A  Q +LL      + PGG ++++ CS+  +++ +
Sbjct: 336 CSGSGVIRRHPDIKRLRRPSDIAKLAELQARLLDNLWPLLAPGGTLLYATCSVLPEENAD 395

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            VQ  L  +P      P   A+ +              ++ P             DGFF 
Sbjct: 396 QVQAFLERTPGVEVTTPNGLAWGRPAGAGR--------QLLPS--------PDSHDGFFY 439

Query: 436 VALRR 440
             LR+
Sbjct: 440 ARLRK 444


>gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           MM3]
 gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           MM3]
          Length = 402

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 185/416 (44%), Gaps = 37/416 (8%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLA 107
           +  IV  T++    +D  L   L   +      ++ LLR+S+ Q++YLD V + A +  A
Sbjct: 2   LTEIVYGTIQRRDTLDYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEA 58

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFY 160
           VE AKR + ++  A +VN +LR + RE         + ++R+A  +  P W  +   + Y
Sbjct: 59  VEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPIERLAIATSHPMWLVQDWASEY 117

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESI 212
           G E    + +  + P      V  D  T    +         A         ++    ++
Sbjct: 118 GLETAEKMCEVNMLPPVPTARVNVDKITVEEAIELLAGEGIEAKRGDLSEDAIQIERGNV 177

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTAL 269
                F +G   +QD S+ +  +         VLD CAAPGGKT  +        +V +L
Sbjct: 178 AHTDAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGQVMSL 237

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
           D+   ++  ++   +RL L   +   +D     ++   + FD +LVDAPCS  G IRR P
Sbjct: 238 DLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKP 297

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           D+   ++  D  + +  Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P 
Sbjct: 298 DIKLGKNKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIKQFLQEHPE 357

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 +     + ++       EG +RI P             DGF+   LR+ +
Sbjct: 358 FEWDTTIKDRMPEKLN---PYIDEGQVRILPHYFA--------TDGFYIACLRKKV 402


>gi|227552686|ref|ZP_03982735.1| RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257897390|ref|ZP_05677043.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
 gi|293378850|ref|ZP_06625005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium PC4.1]
 gi|227178181|gb|EEI59153.1| RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257833955|gb|EEV60376.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
 gi|292642391|gb|EFF60546.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium PC4.1]
          Length = 452

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 192/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VASLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+    LQ IA           +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           +++A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEISAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLIEENATR 306

Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +K  GI+ +S C++ K+++++VV   L   P    +  L +   +S 
Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +      E  + + P             DGFF   LR+ 
Sbjct: 427 IV------EKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|306829015|ref|ZP_07462206.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis ATCC 6249]
 gi|304428820|gb|EFM31909.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis ATCC 6249]
          Length = 437

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 129/457 (28%), Positives = 204/457 (44%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  IV  T+   
Sbjct: 1   MTKVETARNLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ +LD V D+AVV+ AVE AK  K  + 
Sbjct: 58  LTLEWYLSHFIQ-DRDKLDNWLYVLLLMSAYQVRFLDKVPDHAVVNEAVEIAKARK--KG 114

Query: 120 FAKLVNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDFETIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A   P     L +          F+EG   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEANDSPLAASGLVKEQGHFAGHDLFSEGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKT  +   ++  KVTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTVHMASYLTSGKVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  K  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFEKDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + +  +G I ITP++         G DGFF    R++
Sbjct: 407 IDILKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister
           microaerophilus UPII 345-E]
 gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister
           microaerophilus UPII 345-E]
          Length = 448

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 105/467 (22%), Positives = 190/467 (40%), Gaps = 47/467 (10%)

Query: 1   MKSG----MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+     +N RL++   +  +  +       L   +       L  RD+ L+  +V   
Sbjct: 1   MKNSNIKQINERLLAYQCIYEIFYRDAYANLSLQKIFKSHK---LLSRDKALITELVYGI 57

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
            R    +  +++ +   S+ +   S++ LL + + Q++YLD + + A V+  V+  K+  
Sbjct: 58  CRKCNYLQYIVEKLSNRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVNETVKLTKKI- 116

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLA 167
            ++   + VN+ILR   R+K E+            + I   P W  ++    YG  +   
Sbjct: 117 THQGNVRFVNAILRNFLRKKAEINDFSKLSKFEKLSLIYNQPIWLIQKWNKDYGINKTKE 176

Query: 168 ISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGF 218
           I  A   P  + +                +   +          I L +   ++      
Sbjct: 177 ILQAFNLPENLFVRCNELKITTNDLIKIFDENKIEYSGVENFPNIFLIKNGVNLFKTDLL 236

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275
            +G  ++Q  S+ IP           VLD+CAAPG KT Q+   + +   + A D+   +
Sbjct: 237 EKGYIFIQSISSIIPAYALDPKPYEKVLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHK 296

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           ++ +  N++RL +        DA    P   + +D VL+DAPCS  G +   P++ W R 
Sbjct: 297 IKLIEENINRLGVKIVTPKLQDATKLLPTLNEQYDKVLLDAPCSGLGVLGHKPELRWRRT 356

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + I      Q+ LL     +VK GG +V+S C+L+  ++E+VV   L        L  +
Sbjct: 357 EETIESLISTQKDLLKCASIYVKKGGTLVYSTCTLNINENEKVVDWFLNQ-KKEFYLDSI 415

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +       S  G + + PD L+         DGFF    +R
Sbjct: 416 AVNDIIN-------SENGMLTLWPDTLKS--------DGFFIAKFKR 447


>gi|225569232|ref|ZP_03778257.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM
           15053]
 gi|225162031|gb|EEG74650.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM
           15053]
          Length = 434

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 185/461 (40%), Gaps = 52/461 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S +N R +    L  + R+       L        ++ L ++ +  +  ++N TL  L
Sbjct: 1   MASSVNERELILDTLLQITREGEYCHIALRNVLE--KYQYLDKKQRAFITRVINGTLEHL 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++      + R K  +  ++R  V Q+ Y+D V D AV + AV+ A++ +    
Sbjct: 59  IEIDYIINQFSKVKVNRMKPVIGAIIRSGVYQLKYMDSVPDSAVCNEAVKLAEK-RGFAS 117

Query: 120 FAKLVNSILRRVSREKIELLQRIAG------ISIIPEWFKERLENFYGKERVLAISDACI 173
               VN +LR +SR   ++               +P+W  E+    YG++ VL +++  +
Sbjct: 118 LKAFVNGVLRNISRNMNKIAYPKDYIEHLSVRYSLPKWILEQWLERYGEDNVLVMAEDFL 177

Query: 174 SPLYIDLTVKFD---IETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWW 224
               + +    D    E     L    + T  I              +  L  F  G ++
Sbjct: 178 KEKPVTIRFNPDRISREALTEMLKEEGVRTEEIPEFPAALHIYGYNYLGGLESFRRGYYY 237

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRC 281
           VQD ++   V         +V+D+CAAPGGK   +         V A D++  ++  +  
Sbjct: 238 VQDINSMRTVHWAAPRKGDTVIDVCAAPGGKALHMAERLHGTGHVEARDLTGYKVRLIEE 297

Query: 282 NLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           N++R  L   + ++ D    D    +  D V+ D PCS  G I + PD+ +    +   +
Sbjct: 298 NIERSGLKNIEAVKWDATVPDRSAAESADIVIADLPCSGLGVIGKKPDLKYKMTEEMQKE 357

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QRK+L    ++VKPGG +V+S C++  +++E   +    + P    +         
Sbjct: 358 LAALQRKILSVVQAYVKPGGKLVYSTCTVSWEENEGNARWFKNTYPGFSLV--------- 408

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                +++       DGF+    ++
Sbjct: 409 -------------------REKQMIPGLDEGDGFYIALFQK 430


>gi|194397538|ref|YP_002038345.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae G54]
 gi|194357205|gb|ACF55653.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae G54]
 gi|301794709|emb|CBW37160.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pneumoniae INV104]
          Length = 437

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1271]
 gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1271]
          Length = 402

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 186/416 (44%), Gaps = 37/416 (8%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLA 107
           +  IV  T++    +D  L   L   +      ++ LLR+S+ Q++YLD V + A +  A
Sbjct: 2   LTEIVYGTIQRRDTLDYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEA 58

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFY 160
           VE AKR + ++  A +VN +LR + RE         + ++R+A  +  P W  +   + Y
Sbjct: 59  VEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPMWLVQDWASEY 117

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESI 212
           G E    + +  + P      V  D  T    +         A         ++    ++
Sbjct: 118 GLETAEKMCEVNMLPPVPTARVNVDKITVDEAIELLASEGIEAKHGDLSEDAIQIERGNV 177

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTAL 269
                F +G   +QD S+ +  +         VLD CAAPGGKT  +        +V +L
Sbjct: 178 AHTDAFKKGFLSIQDESSMLVARALDPNEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSL 237

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
           D+   ++  ++   +RL L   +   +D     ++   + FD +LVDAPCS  G IRR P
Sbjct: 238 DLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKP 297

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           D+   ++  D  + +  Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P 
Sbjct: 298 DIKLGKNKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIKQFLQEHPE 357

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 + +   + ++       EG +RI P             DGF+   LR+ +
Sbjct: 358 FEWDTTIKNRMPEKLN---PYIDEGQVRILPHYFA--------TDGFYIACLRKKV 402


>gi|148994053|ref|ZP_01823409.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488547|ref|ZP_02712746.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae SP195]
 gi|147927520|gb|EDK78548.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572591|gb|EDT93119.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae SP195]
          Length = 437

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFANGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|183603236|ref|ZP_02710913.2| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC1087-00]
 gi|307127948|ref|YP_003879979.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae 670-6B]
 gi|183570571|gb|EDT91099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC1087-00]
 gi|306485010|gb|ADM91879.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae 670-6B]
 gi|332199760|gb|EGJ13835.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA41317]
          Length = 437

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|257886037|ref|ZP_05665690.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,501]
 gi|257821893|gb|EEV49023.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
           1,231,501]
          Length = 452

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/460 (24%), Positives = 190/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+    LQ IA           +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGIADTIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           ++ A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306

Query: 286 LHLYA-EDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L + +     +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSTVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +K  GI+ +S C++ K+++++VV   L   P    +  L +   +S 
Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   E  + + P             DGFF   LR+ 
Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|148989395|ref|ZP_01820763.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925145|gb|EDK76225.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 437

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|307710617|ref|ZP_07647051.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK564]
 gi|307618662|gb|EFN97804.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK564]
          Length = 437

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  IV  T+   
Sbjct: 1   MTKVETARSIALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--VRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   RL+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIDNIKRKNKRDSIAYSLPVWLVARLKEEYGEERAQAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDIDRKEEIQALLEASDSSLSPSGLVKEQGHFAGHDLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHIASYLTIGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFGQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFAPLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLGKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|225859487|ref|YP_002740997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae 70585]
 gi|225721429|gb|ACO17283.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae 70585]
          Length = 437

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGI 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|225857347|ref|YP_002738858.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae P1031]
 gi|225726221|gb|ACO22073.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae P1031]
          Length = 437

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 202/457 (44%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +SV Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|332072908|gb|EGI83389.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA17545]
          Length = 437

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|303254346|ref|ZP_07340454.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455]
 gi|301802435|emb|CBW35190.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pneumoniae INV200]
 gi|302598697|gb|EFL65735.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455]
          Length = 437

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 202/457 (44%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +SV Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|323442308|gb|EGA99938.1| RNA-binding protein [Staphylococcus aureus O46]
          Length = 435

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++   ++   D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIVDQKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                +    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCIHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +V+S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|322392343|ref|ZP_08065804.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780]
 gi|321144878|gb|EFX40278.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780]
          Length = 437

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 202/457 (44%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V+  +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MNKVETARSLALEVLEDVLVNQAYSNITLNKHLKGSQ---LSVVDKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRH 119
             ++  +   +     +    L  LL +S+ Q+ YLD   D+AVV+ AVE AK  K  + 
Sbjct: 58  LTLEWYISHFIE-DRDKLDSWLYVLLLMSLYQLQYLDKLPDHAVVNEAVEIAKSHK--KG 114

Query: 120 FAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR                +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGLPDITSIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174

Query: 173 ISP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           +      I +T     E     L A         L +          F+EG+  +QD S+
Sbjct: 175 LQRNKASIRVTDLSRKEEIKKLLGASDSILSVAGLVKEQGHFAGHDLFSEGLITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L  ++ N +RL +
Sbjct: 235 QLVAPTLALQGDEQVLDACAAPGGKTAHIASYLTVGQVTALDLYDHKLTLIQENAERLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFGEDQFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VVQ  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|332358059|gb|EGJ35892.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1056]
          Length = 438

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 190/451 (42%), Gaps = 34/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +       L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124
           L  ++     +    L  LL +S+ Q+LYLD +  +A V  A+E AK R + +  FA  +
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAIEIAKIRKRGSEKFANAL 123

Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178
              + R             +R +    +P W  + L   +G+ER LAI  +    S   I
Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASI 183

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +T           L A         L +          F  G   +QD S+ +      
Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLD 243

Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295
                 +LD C+APGGKT  +   ++   +TALD+   +LE +  N +RL L       +
Sbjct: 244 IEGEEQILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303

Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L    
Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +G 
Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           I ITP++ E         DGFF    R++ +
Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438


>gi|168575074|ref|ZP_02721037.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae MLV-016]
 gi|307068359|ref|YP_003877325.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
           AP200]
 gi|183578893|gb|EDT99421.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae MLV-016]
 gi|306409896|gb|ADM85323.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
           AP200]
          Length = 437

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 199/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          F  G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFTNGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
 gi|167656263|gb|EDS00393.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
          Length = 439

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 194/463 (41%), Gaps = 47/463 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+   AR ++  LL  +  +      +LD  +  +      +RD+    A+    L   
Sbjct: 1   MKT---ARQITLDLLIRMDTQGAYSNIILDHAFTQNDA---DRRDKAFSAALFYGVLERR 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D ++ +       + K ++ ++LR+   Q+L+++ V D A V+ +V         + 
Sbjct: 55  MTLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTK- 113

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
               VN+ILR   R + ++           +     P+W  ++  +  G++R + + ++C
Sbjct: 114 AKGYVNAILRTFLRNEKQIDYGNLTGEAKLSIEYSCPKWLVKKWNSELGEQRAMQMINSC 173

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVW 223
                I   V       +    +L +  +      L +        + I     + +G++
Sbjct: 174 FGRPPIYARVNTVRYTVDDVIGELESEGISAAKNSLIDACIELANTKGIEQSSAYKKGMF 233

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            +QD S+ I  ++   + N +V+DLC+APGGKT      +    ++ + D+   ++  + 
Sbjct: 234 HIQDISSQICCKIAAPVFNETVVDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIA 293

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
               RL L      E DA  + P     D V+ D PCS  G IRR P++ + +    +  
Sbjct: 294 NTAKRLGLTIITAAENDATKFNPDIPKADRVICDVPCSGLGVIRRKPEIKY-KPMKQLET 352

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-ELVPLNSAYW 398
               QRK++     +VKPGG +V+S C++ + +++++V + L+     V  +VPLN    
Sbjct: 353 LPDTQRKIINNAAEYVKPGGTLVYSTCTVSRTENDDIVDEFLKEHSDFVPVVVPLNIKGL 412

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +                       +       DGFF   LR++
Sbjct: 413 ED-----------------SYKRTMLPCDVNGDGFFTATLRKV 438


>gi|168491383|ref|ZP_02715526.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574228|gb|EDT94756.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC0288-04]
          Length = 437

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 199/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDNWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          F  G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFTNGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
           DSM 15470]
 gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
           DSM 15470]
          Length = 454

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 96/459 (20%), Positives = 184/459 (40%), Gaps = 44/459 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L  +  K       +        +  L + ++ L+  ++    R       +
Sbjct: 12  ARTLAFEALYEIFEKNAYANLTIQSILR---WCPLKKEERHLLTELIYGVCRKYNYCLWM 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  +    + +   +++ LL + + QI++LD + + A V+  V+ AK+   +    K +N
Sbjct: 69  ISLISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKKV-THIGNVKFIN 127

Query: 126 SILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            +LR                  +   + I   PEW     E  YG  +   I  A  +  
Sbjct: 128 GVLRNFLRRRGSLTLPDRTSNRVFYESLIYNQPEWLIRFFEKEYGMGQSEKILKAFNTIS 187

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQD 227
              + V     + +    +L    +  G I       +I +            G+ ++Q 
Sbjct: 188 DTCIRVNTLKIETDDIKKQLKLRNISVGDISYMPEALAIKAGTDILFSEFLQTGLIYIQT 247

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
           AS+ IP ++ G      VLD+CAAPG KT  +   + +   + A DV   +++ ++ N  
Sbjct: 248 ASSMIPAKVLGPDAGDHVLDMCAAPGSKTTHIAALMGNRGSIDAWDVYPHKVKLIKDNAK 307

Query: 285 RLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL +        D+    P   + +D VL+DAPCS  G +    ++ W R   D+     
Sbjct: 308 RLGISIIHTEVRDSVKPLPFLYETYDKVLLDAPCSGLGVLGHKVELRWRRKESDLSVFPP 367

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q++L+ Q   + K GG++V+S C+L+  ++E ++ + L                 KS+ 
Sbjct: 368 LQKQLIEQAAKYTKTGGVLVYSTCTLNPDENEHIINEFLSLHSEFAPEEFNFPVLGKSL- 426

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   G + + PD++          DGFF   LR++
Sbjct: 427 -------NGMMTLYPDLVRS--------DGFFVAKLRKV 450


>gi|94988962|ref|YP_597063.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94992855|ref|YP_600954.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94542470|gb|ABF32519.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546363|gb|ABF36410.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 440

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 203/451 (45%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  
Sbjct: 9   TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  LL +S+ Q+ YLD    +A+V+ AV  AK     +   K VN
Sbjct: 66  LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124

Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           +ILR+ +   +  +       +  +    +P W  ++LE+ +G  R +AI ++    S  
Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSHRAVAIMESLFVRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    +E  A  L+A         L +      +   F  G   +QD S+ +    
Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    + 
Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L  
Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +
Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G++ ITP+  +         DGFF   +RR+
Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|323440992|gb|EGA98699.1| RNA-binding protein [Staphylococcus aureus O11]
          Length = 435

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++   ++   D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIVDQKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                +    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCIHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIDSLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +V+S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|329120994|ref|ZP_08249625.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
 gi|327471156|gb|EGF16610.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
          Length = 448

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/467 (22%), Positives = 190/467 (40%), Gaps = 47/467 (10%)

Query: 1   MKSG----MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+     +N RL++   +  +  +       L   +       L  RD+ L+  +V   
Sbjct: 1   MKNSNIKQINERLLAYQCIYEIFYRDAYANLSLQKIFKSHK---LLSRDKALITELVYGI 57

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
            R    +  +++ +   S+ +   S++ LL + + Q++YLD + + A V+  V+  K+  
Sbjct: 58  CRKCNYLQYIVEKLSNRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVNETVKLTKKI- 116

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLA 167
            ++   + VN+ILR   R+K E+            + I   P W  ++    YG  +   
Sbjct: 117 THQGNVRFVNAILRNFLRKKAEINDFSKLSKFEKLSLIYNQPIWLIQKWNKDYGINKTKE 176

Query: 168 ISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGF 218
           I  A   P  + +                +   +          I L +   ++      
Sbjct: 177 ILQAFNLPENLFVRCNELKITTNDLIKIFDENKIEYSGVENFPNIFLIKNGVNLFKTDLL 236

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275
            +G  ++Q  S+ IP           VLD+CAAPG KT Q+   + +   + A D+   +
Sbjct: 237 EKGYIFIQSISSIIPAYALDPKPYEKVLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHK 296

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           ++ +  N++RL +        DA    P     +D VL+DAPCS  G +   P++ W R 
Sbjct: 297 IKLIEENINRLGVKIVTPKLQDATKLLPTLTGQYDKVLLDAPCSGLGVLGHKPELRWRRT 356

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + I      Q+ LL    ++VK GG +V+S C+L+  ++E++V   L        L  +
Sbjct: 357 EETIESLISTQKDLLKCASTYVKKGGTLVYSTCTLNINENEKIVDWFLNQ-KKEFYLDSI 415

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +       S  G + + PD L+         DGFF    +R
Sbjct: 416 AVNDIIN-------SENGMLTLWPDTLKS--------DGFFIAKFKR 447


>gi|332366359|gb|EGJ44110.1| RNA methyltransferase Sun [Streptococcus sanguinis SK355]
          Length = 438

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 124/458 (27%), Positives = 194/458 (42%), Gaps = 38/458 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +  +L  V  +       ++     S    LSQ D+ LV  +V  T+    
Sbjct: 3   SKQKKARWQALEILEEVFEEGAYSNIAINRALSQSQ---LSQADKGLVTELVYGTVARKI 59

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L  ++     +    L  LL +S+ Q+LYLD +  +AVV  AVE AK  K  R  
Sbjct: 60  TLEWYLSHLIE-DRDKLDNWLYILLELSLYQMLYLDKIPQHAVVHEAVEIAKIRK--RGS 116

Query: 121 AKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN++LRR         +      +R +    +P W  + L   YG+ER LAI  +  
Sbjct: 117 EKFVNALLRRIEREDVADFKTIKRKNKRYSIQYSLPVWLVKALIEEYGEERALAIFASLF 176

Query: 174 SP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
                 I +T           L A   P     L +          F  GV  +QD S+ 
Sbjct: 177 VCSKASIRVTDMSRKAELRQLLGAEDSPLSPSALVKRQGHFAGHQLFESGVITIQDESSQ 236

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL- 288
           +            +LD C+APGGKT  +   ++   +TALD+   +LE +  N  RL L 
Sbjct: 237 LVAPTLSIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAKRLGLA 296

Query: 289 YAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                 ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q 
Sbjct: 297 DKVTTKKLDATKVFEIFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQL 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      ++ GGI+ +S C++  +++ EVV+K L S P   +++  +           
Sbjct: 357 DILDSVCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RK 408

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            +  +G I ITP++ E         DGFF    R++ +
Sbjct: 409 DIVKDGCILITPELYES--------DGFFISQFRKISE 438


>gi|293572652|ref|ZP_06683620.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E980]
 gi|291607238|gb|EFF36592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecium E980]
          Length = 452

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 193/460 (41%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   L  V +       LL+     S    L+Q+D  L   ++  T+     ++  
Sbjct: 12  VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  ++  +  +    ++ LL +SV Q+ +LD V  +A+++ AVE AK  K N    K VN
Sbjct: 69  VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126

Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+         + ++R++    +P W  +RL +  G E    +  +   P + 
Sbjct: 127 GVLRNYQRQGAPDLQGITDPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186

Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     +           ++ A         +      + S   F +GV  +QD S+
Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT           G +V ALDV + +++ +  N  R
Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLIEENATR 306

Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +  A    +MDA         + FD +LVDAPCS  G +RR PD+ + +  D++    
Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +K  GI+ +S C++ K+++++VV   L + P    +  L     +S 
Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLETHPDFERIDVLTDPMLQSS 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +      E  + + P             DGFF   LR+ 
Sbjct: 427 IV------EKMLTLYPHQFY--------TDGFFICCLRKK 452


>gi|303258671|ref|ZP_07344651.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293]
 gi|303266637|ref|ZP_07352521.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457]
 gi|303268527|ref|ZP_07354320.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458]
 gi|302640172|gb|EFL70627.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293]
 gi|302641922|gb|EFL72276.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458]
 gi|302643799|gb|EFL74062.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457]
          Length = 437

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +SV Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD  + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDTKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|298694510|gb|ADI97732.1| probable RNA-binding protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 435

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++   ++   D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TSVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +V+S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|82750821|ref|YP_416562.1| RNA-binding protein [Staphylococcus aureus RF122]
 gi|82656352|emb|CAI80770.1| probable RNA-binding protein [Staphylococcus aureus RF122]
          Length = 435

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAVEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVGASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|94990962|ref|YP_599062.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94544470|gb|ABF34518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 440

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 205/451 (45%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  
Sbjct: 9   TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  LL +S+ Q++YLD    +A+V+ AV  AK     +   K VN
Sbjct: 66  LAHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124

Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           +ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S  
Sbjct: 125 AILRQFTNHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    +E  A  L+A         L +      +   F  G   +QD S+ +    
Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    + 
Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L  
Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +
Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G++ ITP+  +         DGFF   +RR+
Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|324991771|gb|EGC23703.1| RNA methyltransferase Sun [Streptococcus sanguinis SK353]
          Length = 438

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 191/451 (42%), Gaps = 34/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +       L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124
           L  ++     +    L  LL +S+ Q+LYLD +  +A V  A+E AK R + +  FA  +
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAIEIAKIRKRGSEKFANAL 123

Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178
              + R             +R +    +P W  + L   +G+ER LAI  +    S   I
Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASI 183

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +T           L A         L +          F  G   +QD S+ +      
Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLD 243

Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295
                 +LD C+APGGKT  +   ++   +TALD+   +LE +  N +RL L       +
Sbjct: 244 IEGEEEILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303

Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +DA          +FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L    
Sbjct: 304 LDATKVFETFGPDVFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +G 
Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           I ITP++ E         DGFF    R++ +
Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438


>gi|145219990|ref|YP_001130699.1| sun protein [Prosthecochloris vibrioformis DSM 265]
 gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265]
          Length = 445

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 118/463 (25%), Positives = 204/463 (44%), Gaps = 38/463 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   AR ++  LL  +         LL     +S    LS+ D+    ++VN  LR+ 
Sbjct: 1   MTS---ARELAFTLLQALETGNRHSDSLLHDMLQES---SLSRTDRAFATSLVNGVLRYR 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D V+      +L +   +++ +LR+   Q+L+LD V  +AVV+ +V  A+R K  R 
Sbjct: 55  LQLDFVIGHFYSHNLQKASPAIRNILRLGAWQLLFLDRVPAWAVVNESVRLARRFKGER- 113

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            AKLVN++LR++S E I L +           A     PE   +     YG +R  ++  
Sbjct: 114 MAKLVNAVLRKISPETIHLEEWTRAMEPAARLALRYSHPEELVKEWIAAYGTQRAESMLR 173

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF-------AEGVW 223
                 +    +   ++T + +       T   RL      +     F         G+ 
Sbjct: 174 YDNESPWFGFRIN-SLKTDSDRFFTQTGTTEVARLDSGLRKLFLSQDFSPFEVPLQNGLV 232

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLR 280
            VQ+ +  +   L        VLD+CAAPGGKTA   +L+ +   +TALD+ +++  K+R
Sbjct: 233 SVQNPTQLLACLLLNPTPGSEVLDMCAAPGGKTAALAELMGNEGHITALDIYEQKTNKIR 292

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
              + L +     +  DA  + P    DA+L+DAPC+ TG + R  ++ W  D++ +   
Sbjct: 293 RLAETLGISIITALTDDARSFIPPTPPDAILLDAPCTGTGVLGRRTELRWKLDSEKLDGL 352

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q +LL      +K GG++V++ CS+D +++    +  L+  P   E  P  +     
Sbjct: 353 LKLQAELLEHAAHILKEGGVLVYATCSVDPRENNLQTEAFLQRHP---EFSPDANPGSLP 409

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              +  L P+G +   P           G DG F   + +  Q
Sbjct: 410 PAFSSVLRPDGSLLTLPG-------EQQGFDGGFCHRMVKNQQ 445


>gi|325294320|ref|YP_004280834.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064768|gb|ADY72775.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 442

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 116/463 (25%), Positives = 215/463 (46%), Gaps = 47/463 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +G N RL++  +L+   + +  L   ++          L  +D+  +R IV+ T+RFL  
Sbjct: 2   TGWNERLIAIKILNRFEKDKK-LKEHIEKFTSR-----LHPQDRAFIREIVSGTVRFLRL 55

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +D  ++     +L R+K +++  LRV   QI + +V  YA ++  VE  K+    +  A 
Sbjct: 56  LDFSIEKATGKNLKRQKNTVRNSLRVIAYQIFFTNVPPYAALNETVEAVKKILG-KKAAG 114

Query: 123 LVNSILRRVSREKI--------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
            VN+I +++             +  +R++ +     W  +R  NFYGKE +  +      
Sbjct: 115 FVNAISKKIIGFDYKKEIERISDYFERLSILYSFETWMVKRWSNFYGKEEIEKLLKGLNR 174

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWV 225
              + + V       +   + L    +                   I S+PG+ EG +++
Sbjct: 175 VAPLFIRVNTIKISQQELLNLLEKTKIDAEPHPFIPYMIRIKGRVPIESIPGYKEGFFYI 234

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCN 282
           QD ++ +   L        +LD+ AAPGGKT     L +  A++ A+D++K R++ L+ N
Sbjct: 235 QDPASFLSAYLLDPKQGEIILDVGAAPGGKTTALSSLTIDKARIIAVDINKERMKLLKNN 294

Query: 283 LDRLHLYAEDIIEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           L RL +   +++  D      F    +  FD +L+DAPCS+TG IRRHP+  W +    I
Sbjct: 295 LKRLGISNVELVLTDIQKDKNFIEKHENSFDKILIDAPCSATGVIRRHPEGKWNKSLKLI 354

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
             +   QR LL      +KPGG++++S CSL+K++ E+++           E+    S+ 
Sbjct: 355 KYNQTIQRNLLSSCYKLLKPGGVLLYSVCSLEKEEGEDIL-------KFAQEIGFKESSL 407

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   ++  + + + ++R+ P          + MDGFF     +
Sbjct: 408 YNLPELLKSFAKKHFLRVFPH--------KNNMDGFFYSKFEK 442


>gi|94994842|ref|YP_602940.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94548350|gb|ABF38396.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 440

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 110/451 (24%), Positives = 203/451 (45%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  +  +       L+ +    A   LS +D+ L+  IV  T+     ++  
Sbjct: 9   TRGKALLVIEAIFDQGAYTNIALNQQLSSKA---LSAKDRALLTEIVYGTVSRKISLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  LL +S+ Q++YLD    +A+V+ AV  AK     +   K VN
Sbjct: 66  LAHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124

Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           +ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S  
Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRAVAIMESLFMRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
              +T    +E  A  L+A         L +      +   F  G   +QD S+ +    
Sbjct: 185 STRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    + 
Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L  
Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +
Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G++ ITP+  +         DGFF   +RR+
Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|163790822|ref|ZP_02185247.1| Sun protein [Carnobacterium sp. AT7]
 gi|159873890|gb|EDP67969.1| Sun protein [Carnobacterium sp. AT7]
          Length = 458

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 110/462 (23%), Positives = 194/462 (41%), Gaps = 44/462 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++  +L    +       L++     +    LS  D  L+  +V   L+    +D  
Sbjct: 16  SRYLAMSILERTDKTGSYSNLLINEAIQKNK---LSAADARLLTELVYGVLQRKLTLDFY 72

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L     +    ++ LLR+S+ Q++YLD +  +A++  AVE AK+ K +   +K +N
Sbjct: 73  LSSFLAED-KKIDIWVRNLLRLSIYQMIYLDKIPVHAILFEAVEVAKK-KGHIGISKFIN 130

Query: 126 SILRRVSREKI-------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +LR   R+         + ++R++    +P+W  E+     G E    + ++ + P + 
Sbjct: 131 GVLRNADRKGFSSIETIKDPMERLSIELSMPKWLVEKFTEDIGLEETKKMGESLLRPSHS 190

Query: 179 DLTVKFDIETWAHKLNAVMLP--------TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              V     T    L A+              + +        S P F  G   +QD S+
Sbjct: 191 SARVNEKFLTVEEALEAMEEEGFDVRKSAISPVGIVSDGGHFASSPLFQSGQLTIQDESS 250

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDR 285
            +         +  VLD CAAPGGKT  +        G KVTALD+ + ++  +  N  R
Sbjct: 251 QLVAPALQLEPHHQVLDACAAPGGKTTHIASYLSAEEGGKVTALDLHEHKVALITENAKR 310

Query: 286 LHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +H+            +       + FD +LVDAPCS  G +RR PD+ +T+   D++   
Sbjct: 311 MHVEDVVTAMKLDARNVDQEFSDEQFDRILVDAPCSGLGLMRRKPDIKYTKKEKDLLNLQ 370

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L Q    +K GG++V+S C++  +++++ V K L                 K  
Sbjct: 371 KVQLGILEQVAPKLKVGGLLVYSTCTIANEENKDTVDKFLSLH------TDFEQVSVKVE 424

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           D        G +++ P           G DGFF   LR++ +
Sbjct: 425 DSLTRCIKNGSLQLYPHDF--------GTDGFFISCLRKVQK 458


>gi|239636304|ref|ZP_04677306.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           warneri L37603]
 gi|239597659|gb|EEQ80154.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           warneri L37603]
          Length = 435

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 193/460 (41%), Gaps = 46/460 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M + +  R ++   +  ++ +       ++          L   D+ L   +V  T++  
Sbjct: 1   MTNSI--RGLAFETIQAILDEGAYSNLEINEVLSTYEISDL---DKGLFTELVYGTVKRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L + +      +++LL +S+ Q +YLD V ++A+++ AVE AK +    +
Sbjct: 56  YTLDFYLKPFLKTKIKG---WVRELLWMSIYQYVYLDKVPNHAIINEAVEIAKEE-GGYY 111

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN ILR + R       +  +  +RIA    +P+W  +     YG E+  AI+ + 
Sbjct: 112 TGNVVNGILRTIMRSELPDVKDIQDDKKRIAIQYSLPKWLVDHWVTHYGLEQTEAIAQSF 171

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
           + P+   +         +     L                L    + IV+   F +G+  
Sbjct: 172 LEPVATTVRANITRGSIDNIISALEKENYTVERDDVLPFCLHISGKPIVNSRAFKDGLVS 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           +QD S+     + G   + SVLD C+APGGK   +         V A D+   +++ +  
Sbjct: 232 IQDKSSMFVAHIMGLNRDDSVLDACSAPGGKACHIAEILSPEGHVDATDIHDHKIKLIDF 291

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N+ +L L      + DA        +D +LVDAPCS  G +R  P++ +T+  + I    
Sbjct: 292 NIRKLRLKNIKAYQHDATK-PYNNQYDKILVDAPCSGFGVLRHKPEIKYTQSKNSIQSLV 350

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      VKPGG +++S C++++ ++E VV   L+ +    E  P        +
Sbjct: 351 ELQLQILENVKHNVKPGGSIIYSTCTIEQMENENVVYTFLKQNK-DFEFEPFQHPMTGEM 409

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      +++ P             DGFF   ++R 
Sbjct: 410 V--------KILQVFPQDY--------HSDGFFIARIKRK 433


>gi|325688781|gb|EGD30790.1| RNA methyltransferase Sun [Streptococcus sanguinis SK115]
          Length = 438

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 194/458 (42%), Gaps = 38/458 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +  +L  V  +       L+     S    LSQ D+ LV  +V  T+    
Sbjct: 3   SKHKTARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKI 59

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L  ++     +    L  LL +S+ Q+LYLD +  +A V  AVE AK  K  R  
Sbjct: 60  TLEWYLSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAVEIAKIRK--RGS 116

Query: 121 AKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC- 172
            K +N++LRR         +      +R +    +P W  + L   YG+ER LAI  +  
Sbjct: 117 EKFINALLRRIEREGVADFKTIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLF 176

Query: 173 -ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
             S   I +T       +   L A         L +          F  G   +QD S+ 
Sbjct: 177 VRSKASIRVTDMSRKAEFRQLLGAENSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQ 236

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL- 288
           +            +LD C+APGGKT  +   ++   +TALD+   +LE +  N +R+ L 
Sbjct: 237 LVAPTLDIEGEEEILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAERVGLA 296

Query: 289 YAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                 ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q 
Sbjct: 297 DKITTKKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQL 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      ++ GGI+ +S C++  +++ EVV+K L S P   +++  +           
Sbjct: 357 DILDSVCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RK 408

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            +  +G I ITP++ E         DGFF    R++ +
Sbjct: 409 DIVKDGCILITPELYES--------DGFFISQFRKISE 438


>gi|293380312|ref|ZP_06626386.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus 214-1]
 gi|295693192|ref|YP_003601802.1| sun protein [Lactobacillus crispatus ST1]
 gi|290923127|gb|EFE00056.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus 214-1]
 gi|295031298|emb|CBL50777.1| SUN protein [Lactobacillus crispatus ST1]
          Length = 441

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 209/460 (45%), Gaps = 43/460 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    +AR VS   L  V+ +       L+     S    LS  DQ L   IV  T+++ 
Sbjct: 1   MSIDKSARAVSLETLIKVLDQGSYSNISLNNSLKHS---NLSIADQNLATNIVYGTIQYR 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L  K   ++ LL +S+ Q+++LD V D AV+D A + AK+  K + 
Sbjct: 58  LFLEYQLKGLVRTKLTEK--YIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHS 115

Query: 119 HFAKLVNSILRRVSRE------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR  +R       +   ++ ++    +PEW  + L + +G ++  ++ ++ 
Sbjct: 116 AGFRLVNGILRSFTRRGVILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSI 175

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWV 225
             P    + ++   D E    +L                +      I     F EG   +
Sbjct: 176 NEPAKNSVRISKLADKEQVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLFEEGKLTI 235

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNL 283
           QD +AS+ V+ F    +  VLD C+APGGKT Q    +    VTALD+  ++L  +R N 
Sbjct: 236 QDEAASLVVEAFDFEQDEHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKLRLVRDNA 295

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            R+H+         DA           F  +LVDAPCS  G +RR P++ +T+   D+  
Sbjct: 296 QRMHVANKVKTKACDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQN 355

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L    S +K  G +V+S CS+  +++EEVV+K L++ P   ELVP      +
Sbjct: 356 LQKIQLAILTAVSSLLKKNGELVYSTCSISMEENEEVVKKFLQAHP-DFELVPFKLTKLE 414

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                   S  G ++I PD+         G DGFF    +
Sbjct: 415 --------SKTGMLKIMPDL--------DGNDGFFIAKFK 438


>gi|283470429|emb|CAQ49640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 435

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 101/455 (22%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFKHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +V+S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKTGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|329728796|gb|EGG65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 435

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 186/455 (40%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N  LR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGFLRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|304381220|ref|ZP_07363873.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304340203|gb|EFM06144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 435

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKXHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|322377784|ref|ZP_08052273.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           M334]
 gi|321281207|gb|EFX58218.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           M334]
          Length = 437

 Score =  239 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 128/457 (28%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++   L  V   +      L+     S    LS  D+ LV  IV  T+   
Sbjct: 1   MTKVETARSLALAGLEDVFINQAYSNIALNKHLKGSQ---LSAADKGLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--VRKKG 114

Query: 120 FAKLVNSILRRVSREKI-------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWLDIASIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEASASSLSPSGLVKEQGHFAGHDLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLNLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     +Y  K  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEYFSKDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLGKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIVKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|57651786|ref|YP_186092.1| sun protein [Staphylococcus aureus subsp. aureus COL]
 gi|148267708|ref|YP_001246651.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
 gi|150393766|ref|YP_001316441.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
 gi|151221339|ref|YP_001332161.1| hypothetical protein NWMN_1127 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509389|ref|YP_001575048.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142007|ref|ZP_03566500.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315575|ref|ZP_04838788.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006004|ref|ZP_05144605.2| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795727|ref|ZP_05644706.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
           A9781]
 gi|258415951|ref|ZP_05682221.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
 gi|258419698|ref|ZP_05682665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9719]
 gi|258438740|ref|ZP_05689893.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
           aureus A9299]
 gi|258444554|ref|ZP_05692883.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
           aureus A8115]
 gi|258447613|ref|ZP_05695757.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
 gi|258449455|ref|ZP_05697558.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
 gi|258452514|ref|ZP_05700520.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A5948]
 gi|258454834|ref|ZP_05702798.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A5937]
 gi|269202832|ref|YP_003282101.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282892703|ref|ZP_06300938.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A8117]
 gi|282919999|ref|ZP_06327728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9765]
 gi|282927557|ref|ZP_06335173.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A10102]
 gi|284024141|ref|ZP_06378539.1| sun protein [Staphylococcus aureus subsp. aureus 132]
 gi|294848210|ref|ZP_06788957.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9754]
 gi|296275238|ref|ZP_06857745.1| sun protein [Staphylococcus aureus subsp. aureus MR1]
 gi|297245959|ref|ZP_06929818.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A8796]
 gi|57285972|gb|AAW38066.1| sun protein [Staphylococcus aureus subsp. aureus COL]
 gi|147740777|gb|ABQ49075.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149946218|gb|ABR52154.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
 gi|150374139|dbj|BAF67399.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368198|gb|ABX29169.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257789699|gb|EEV28039.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
           A9781]
 gi|257839287|gb|EEV63761.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
 gi|257844283|gb|EEV68665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9719]
 gi|257847999|gb|EEV71992.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
           aureus A9299]
 gi|257850047|gb|EEV74000.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
           aureus A8115]
 gi|257853804|gb|EEV76763.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
 gi|257857443|gb|EEV80341.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
 gi|257859732|gb|EEV82574.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A5948]
 gi|257863217|gb|EEV85981.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A5937]
 gi|262075122|gb|ACY11095.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282590560|gb|EFB95637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A10102]
 gi|282594715|gb|EFB99699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9765]
 gi|282764700|gb|EFC04825.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A8117]
 gi|294825010|gb|EFG41432.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9754]
 gi|297177123|gb|EFH36377.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A8796]
 gi|302751040|gb|ADL65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|312829611|emb|CBX34453.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315131008|gb|EFT86992.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315198454|gb|EFU28783.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140968|gb|EFW32815.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320144317|gb|EFW36083.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313886|gb|AEB88299.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
 gi|329727100|gb|EGG63556.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 435

 Score =  239 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|328945030|gb|EGG39186.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1087]
          Length = 438

 Score =  239 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 118/451 (26%), Positives = 190/451 (42%), Gaps = 34/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +       L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124
           L  ++     +    L  LL +S+ Q+LYLD +  +A V  AVE AK R + +  FA  +
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAVEIAKIRKRGSEKFANAL 123

Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178
              + R             +R +    +P W  + L   +G+ER LAI  +    S   I
Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASI 183

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +T           L A         L +          F  G   +QD S+ +      
Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLD 243

Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295
                 +LD C+APGGKT  +   ++   +TALD+   +LE +  N +RL L       +
Sbjct: 244 IEGEEEILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303

Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L    
Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +G 
Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           I ITP++ E         DGFF    R++ +
Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438


>gi|325686917|gb|EGD28941.1| RNA methyltransferase Sun [Streptococcus sanguinis SK72]
 gi|327467211|gb|EGF12715.1| RNA methyltransferase Sun [Streptococcus sanguinis SK330]
          Length = 438

 Score =  239 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 190/451 (42%), Gaps = 34/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +       L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124
           L  ++     +    L  LL +S+ Q+LYLD +  +A V  A+E AK R + +  FA  +
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAIEIAKIRKRGSEKFANAL 123

Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178
              + R             +R +    +P W  + L   +G+ER LAI  +    S   I
Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASI 183

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +T           L A         L +          F  G   +QD S+ +      
Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLD 243

Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295
                 +LD C+APGGKT  +   ++   +TALD+   +LE +  N +RL L       +
Sbjct: 244 IEGEEEILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303

Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L    
Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +G 
Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           I ITP++ E         DGFF    R++ +
Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438


>gi|168483273|ref|ZP_02708225.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043312|gb|EDT51358.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC1873-00]
          Length = 437

 Score =  239 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YL+ + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFANGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|126730443|ref|ZP_01746254.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sagittula stellata E-37]
 gi|126709176|gb|EBA08231.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sagittula stellata E-37]
          Length = 413

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 144/437 (32%), Positives = 224/437 (51%), Gaps = 28/437 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     ARL +  LL  V+ +   L+              L+  D+   + +    LR L
Sbjct: 1   MADPSPARLAAVDLLDMVLVQHRPLSET-------DRLDRLAAPDRAAAQRLATEVLRGL 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D VL   L  +   +   +  +LR+   ++     A + VV   VE A R K  +  
Sbjct: 54  ERADRVLKPHLRKAPAGR---VMNILRLGATELC-TGGAAHGVVSDCVEIAARGKRTQGA 109

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             L N++LR+V+        ++  +  +P+W +  L   +G + V A+  A      +DL
Sbjct: 110 KGLANAVLRKVAESGPADWAKL-RVPRLPKWLRAPLAEAWGPQAVAAMERAHFDGAPVDL 168

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T+K D       L   +LPTG +RL++    + +LPGF++G WWVQDA+A++PV+L G +
Sbjct: 169 TLKGD---LPEGLPGELLPTGSVRLRDA-GQVSALPGFSDGAWWVQDAAAALPVKLLGEV 224

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
             L VLD+CAAPGGKT QL   GA+VTALD+S+ RL ++R NLDR  L AE +       
Sbjct: 225 AGLDVLDMCAAPGGKTLQLAARGARVTALDISEARLARVRENLDRCGLEAELVA---GDA 281

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              +  +DA+L+DAPCS+TGTIRRHPD+      + I +    Q  +L   +S +KPGG 
Sbjct: 282 LEHRGQYDAILLDAPCSATGTIRRHPDLPHVHMGEKISELIGLQGWMLDHALSLLKPGGR 341

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CSL   + E  +++ L   P  + +VP  + + +        S EG +R+ PD  
Sbjct: 342 LVYATCSLLPDEGECQIEEALERHPG-LRVVPAEADWIE----PAWRSEEGGLRLRPDFW 396

Query: 421 EKIDGVSSGMDGFFAVA 437
            +      G+DGF+   
Sbjct: 397 AE----RGGLDGFYMAC 409


>gi|87161915|ref|YP_493807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87127889|gb|ABD22403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
          Length = 435

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQYDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|88194923|ref|YP_499723.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87202481|gb|ABD30291.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|329724759|gb|EGG61264.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 435

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETEKILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|332188795|ref|ZP_08390506.1| nusB family protein [Sphingomonas sp. S17]
 gi|332011194|gb|EGI53288.1| nusB family protein [Sphingomonas sp. S17]
          Length = 447

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 148/440 (33%), Positives = 216/440 (49%), Gaps = 31/440 (7%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G   R  +  LL  V+R+   L   L       +       D+ L  AI   TLR LP +
Sbjct: 36  GTATRRAAIRLLDAVLRRGEPLEAALASATRALS----GGPDRGLAHAIAAETLRRLPDL 91

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           DA++D      LP      +  LR+++ Q+L L    +A +   +               
Sbjct: 92  DALIDSATKQRLPD-DAKARFALRIALVQVLALGTPPHAAIATVLPLVD---------GG 141

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
              ++  V     +    +  I  +PE  + R E  +G+E V A + A  +P  +DLT+ 
Sbjct: 142 PRKLVHGVFSTITKSGVLLPEIPALPEATEARWEENWGEEMVEAAAHAIAAPPPLDLTLA 201

Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
               T  WA KL  + L  G +RL     S++ L GF EG WWVQD +ASIP +L G   
Sbjct: 202 DPAATGEWAEKLGGISLLPGHVRLPSGN-SVMELQGFDEGAWWVQDLAASIPARLLG-EG 259

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              VLDLCAAPGGKT QL  +G  VTA+D S+ RL +L  NL+R +  AE +   D  ++
Sbjct: 260 RGHVLDLCAAPGGKTLQLAAAGWTVTAIDQSESRLARLAENLERTNQSAEVV-TADLREW 318

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            PK+  DA+LVDAPCS++G  RRHPDVL+      I + A  QR +L +  +++KPGG +
Sbjct: 319 EPKEAADAILVDAPCSASGIFRRHPDVLYRVRPAIIAEMAELQRVILTRAANWLKPGGKM 378

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ CSL+ ++ E  ++  L   P    LVP+   +         L+ EG IR  P    
Sbjct: 379 VYATCSLEPEEGERQIESFLAERPDYA-LVPITGDWP-------GLTAEGTIRTLP---- 426

Query: 422 KIDGVSSGMDGFFAVALRRL 441
            +      +DGFF   L+R 
Sbjct: 427 TLLAKEGRLDGFFIAMLQRK 446


>gi|302332821|gb|ADL23014.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 435

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|258423740|ref|ZP_05686626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9635]
 gi|257845972|gb|EEV70000.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus A9635]
          Length = 435

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 101/455 (22%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNKIADPKKRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +V+S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|50914729|ref|YP_060701.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|139473325|ref|YP_001128040.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes str.
           Manfredo]
 gi|50903803|gb|AAT87518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|134271571|emb|CAM29796.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pyogenes str. Manfredo]
          Length = 440

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 204/451 (45%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  
Sbjct: 9   TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  LL +S+ Q+ YLD    +A+V+ AV  AK     +   K VN
Sbjct: 66  LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124

Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           +ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S  
Sbjct: 125 AILRQFTNHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    +E  A  L+A         L +      +   F  G   +QD S+ +    
Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    + 
Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L  
Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +
Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G++ ITP+  +         DGFF   +RR+
Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|270293272|ref|ZP_06199483.1| sun protein [Streptococcus sp. M143]
 gi|270279251|gb|EFA25097.1| sun protein [Streptococcus sp. M143]
          Length = 437

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 201/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR +S  +L  V   +      L+     S    LS  D+ LV  IV  T+   
Sbjct: 1   MTKVETARNLSLAVLEDVFIHQAYSNIALNKHLKGSR---LSVADKGLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD V ++AVV+ AVE AK  K  + 
Sbjct: 58  LTLEWYLSHFIE-DRDKLDNWLYILLLLSAYQLRYLDKVPNHAVVNEAVELAKARK--KG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI D+ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIDSIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFDSL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FAEG   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEASDSLLAVSGLVKEQGHFAGHDLFAEGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++   VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHIASYLTSGMVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  K  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFEKDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQQIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++  VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFHVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|325685886|gb|EGD27952.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 438

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 200/458 (43%), Gaps = 44/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  NAR V+   L  V+ +       L+     +    L   +  L   +V  T+++ 
Sbjct: 1   MKT--NARTVALDTLMKVINQGSYSNISLNHALKAAK---LPGEESRLATNLVYGTIQYQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L  ++ + L      ++ LL +S  QI +LD V + AV+D A + AK     + 
Sbjct: 56  LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKAYGRPKS 113

Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173
              +LVN IL  + R    L ++ A         +P W  +     +GK R   I  +  
Sbjct: 114 SGYRLVNGILHSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226
           S     I ++   D +     L+          L     ++          F +G   VQ
Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+  + F    N   LD C+APGGKT Q    +   +VTALD+ +++L  ++ N  
Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293

Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+ +     +  +DA     Y   + FD +L+DAPCS  G +RR P++ +T+  +DI   
Sbjct: 294 RMRVADRVKVKTLDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L +    +K GG +V+S CS+  +++EE V+K L + P             K 
Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + A   +P+G ++I PD            DGFF    
Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434


>gi|49483380|ref|YP_040604.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427702|ref|ZP_06820334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|49241509|emb|CAG40195.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128060|gb|EFG57694.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus EMRSA16]
          Length = 435

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++   ++   D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANMTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|21282829|ref|NP_645917.1| hypothetical protein MW1100 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486056|ref|YP_043277.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208139|ref|ZP_06924570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300912219|ref|ZP_07129662.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|21204268|dbj|BAB94965.1| MW1100 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244499|emb|CAG42928.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887382|gb|EFH26284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886465|gb|EFK81667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 435

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 188/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKFTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E+   I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEKTETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|21910907|ref|NP_665175.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS315]
 gi|28895403|ref|NP_801753.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes SSI-1]
 gi|71911150|ref|YP_282700.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|209559767|ref|YP_002286239.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131]
 gi|306826944|ref|ZP_07460244.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pyogenes ATCC 10782]
 gi|21905113|gb|AAM79978.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS315]
 gi|28810649|dbj|BAC63586.1| putative RNA-binding Sun protein [Streptococcus pyogenes SSI-1]
 gi|71853932|gb|AAZ51955.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|209540968|gb|ACI61544.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131]
 gi|304430962|gb|EFM33971.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pyogenes ATCC 10782]
          Length = 440

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 204/451 (45%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  
Sbjct: 9   TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  LL +S+ Q+ YLD    +A+V+ AV  AK     +   K VN
Sbjct: 66  LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124

Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           +ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S  
Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    +E  A  L+A         L +      +   F  G   +QD S+ +    
Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    + 
Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L  
Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +
Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G++ ITP+  +         DGFF   +RR+
Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|15901566|ref|NP_346170.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4]
 gi|237649147|ref|ZP_04523399.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974]
 gi|237820737|ref|ZP_04596582.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974M2]
 gi|14973229|gb|AAK75810.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4]
 gi|332074074|gb|EGI84552.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA41301]
 gi|332201157|gb|EGJ15228.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA47901]
          Length = 437

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    L   D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|254450298|ref|ZP_05063735.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238]
 gi|198264704|gb|EDY88974.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238]
          Length = 410

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 149/427 (34%), Positives = 219/427 (51%), Gaps = 19/427 (4%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V  +      LL    G+ A + LS  D+   + +   TLR L R D +L   L  
Sbjct: 1   MLDQVTGEGK----LLPELIGEGALQHLSPEDRARAQRLTTETLRGLARADRMLARFLAK 56

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           + P    S++ +LR+   ++   + A + VV+  VE   R +       LVN++LR+V+ 
Sbjct: 57  TPP---LSVRNVLRLCTVELAGGE-AAHGVVNAGVEMVARSQRTSSMKGLVNAVLRKVAA 112

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
           E  E   ++     +P W +  L++ YG + V AI  A  +   +D+T K D       L
Sbjct: 113 EGPEGWAQL-VTPRLPGWLRSPLKDAYGPDVVAAIEVAQFAGAPLDITAKGDPNAANETL 171

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
              +LPTG IRL++    + +LPGF  G WWVQDA+A+IPVQ+    +   +LDLCAAPG
Sbjct: 172 KGEILPTGTIRLRDA-GQVSTLPGFETGDWWVQDAAAAIPVQILAPQSGEKILDLCAAPG 230

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313
           GKT QL  SGA VTA+D S+ R+ ++  NL R  L A  I   DAF +     FDAVL+D
Sbjct: 231 GKTMQLAASGADVTAVDSSEGRMIRVGENLKRTGLSATTI-TADAFAFTDGG-FDAVLLD 288

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS+TGTIRRHPD+ + +D  +       Q +++   +S +KPGG +VF  CSL   + 
Sbjct: 289 APCSATGTIRRHPDLPYAKDGSEFGILIHQQERMIDHALSLLKPGGRLVFCTCSLLPDEG 348

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E  V++ L                    D     + +G +R+ PD          GMDGF
Sbjct: 349 EVQVEEALARHAGLTVDASAIDRAGIDPDWR---TEDGGLRLRPDYWAD----KGGMDGF 401

Query: 434 FAVALRR 440
           +   LR+
Sbjct: 402 YIAQLRK 408


>gi|257425270|ref|ZP_05601695.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427930|ref|ZP_05604328.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430563|ref|ZP_05606945.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433324|ref|ZP_05609682.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257436166|ref|ZP_05612213.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903770|ref|ZP_06311658.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905534|ref|ZP_06313389.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908510|ref|ZP_06316340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282913992|ref|ZP_06321779.1| sun protein [Staphylococcus aureus subsp. aureus M899]
 gi|282918914|ref|ZP_06326649.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C427]
 gi|282924037|ref|ZP_06331713.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C101]
 gi|283957958|ref|ZP_06375409.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293501025|ref|ZP_06666876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509984|ref|ZP_06668692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526572|ref|ZP_06671257.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
 gi|297591339|ref|ZP_06949977.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus MN8]
 gi|257271727|gb|EEV03865.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274771|gb|EEV06258.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278691|gb|EEV09310.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281417|gb|EEV11554.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257284448|gb|EEV14568.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus M876]
 gi|282314009|gb|EFB44401.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C101]
 gi|282316724|gb|EFB47098.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C427]
 gi|282322060|gb|EFB52384.1| sun protein [Staphylococcus aureus subsp. aureus M899]
 gi|282327572|gb|EFB57855.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330826|gb|EFB60340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595388|gb|EFC00352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790107|gb|EFC28924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920644|gb|EFD97707.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096030|gb|EFE26291.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291466928|gb|EFF09446.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus M809]
 gi|297576225|gb|EFH94941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus MN8]
 gi|315194103|gb|EFU24496.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 435

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++   ++   D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|183603536|ref|ZP_02717787.2| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576422|gb|EDT96950.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae CDC3059-06]
          Length = 437

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    L   D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|225861556|ref|YP_002743065.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230282|ref|ZP_06963963.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254901|ref|ZP_06978487.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298503480|ref|YP_003725420.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225726400|gb|ACO22251.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298239075|gb|ADI70206.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389919|gb|EGE88264.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA04375]
 gi|332200294|gb|EGJ14367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae GA47368]
          Length = 437

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    L   D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNALLRRILREGWPDISSIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|329921088|ref|ZP_08277611.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners SPIN 1401G]
 gi|328934995|gb|EGG31484.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners SPIN 1401G]
          Length = 437

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  E+ + +Q ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDDVQYMSIKYSYPQWLVKYCLDNFGKAKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL      +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLTTEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ +++L  ++  L 
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293

Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           RLH   + I++        +Y   + FD +LVDAPCS  G IRR P+V + +  +D+   
Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           +  Q  +L      +   G +V+S C++  +++E+VV++ L + P    L P        
Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 LS    I+I PD            DGFF     +
Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435


>gi|169832803|ref|YP_001695109.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168995305|gb|ACA35917.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 437

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    L   D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNALLRRILREGWPDISSIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|258508664|ref|YP_003171415.1| tRNA and rRNA cytosine-C5-methytransferase [Lactobacillus rhamnosus
           GG]
 gi|257148591|emb|CAR87564.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
           [Lactobacillus rhamnosus GG]
 gi|259649970|dbj|BAI42132.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
          Length = 446

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 195/465 (41%), Gaps = 46/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N RL++   L+ VM K       LD          L  RD  L+  +V   ++  
Sbjct: 1   MTPN-NPRLLAVQTLTRVMGKGGYSNLTLDHVITKYQ---LDSRDAGLLTNVVYGVIQHQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + +   +    ++ LL+ +V Q+ YLD V   AV   + E AK+   ++ 
Sbjct: 57  LTLDYLLAPFVKN--RQLDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAGI-------SIIPEWFKERLENFYGKERVLAISDAC 172
            AK V  +LR+  R        IA         S  P W  ++L+   G+ +   I  A 
Sbjct: 114 VAKFVTGVLRQAQRSGYPDPMTIADPIQRLAITSSTPVWLVKKLQAQLGETKTAKILAAI 173

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224
             P +  + V     T A  L A+              + L      +     FA+G++ 
Sbjct: 174 NQPAHASIRVNTTKTTAAALLKALQPQFPALKESPLTPVGLVAPGGHLAGTREFADGLYT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT  +        G +VTALD+   ++  +
Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293

Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           + N  RL L        MDA         + FD +LVDAPCS  G IRR P++ +T+  +
Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTKQPE 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D+      Q  +L      +K GG + +S C++ K+++++VV   L + P   E VP+ +
Sbjct: 354 DLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHP-EFEQVPVLT 412

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +            +++ PD  +         DGFF  +L R
Sbjct: 413 LKPLAKTHGAPA-----LQLFPDDYD--------TDGFFIASLIR 444


>gi|323350301|ref|ZP_08085966.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66]
 gi|322123486|gb|EFX95157.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66]
          Length = 438

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 191/453 (42%), Gaps = 38/453 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +       L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEILEEVFEEGAYSNIALNRALSQSK---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  ++     +    L  LL +S+ Q+LYLD +  +A V  AVE AK  K  R   K +N
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAVEIAKIRK--RGSEKFIN 121

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR                +R +    +P W  + L   YG+ER LAI  +    S  
Sbjct: 122 ALLRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T           L A         L +          F  G   +QD S+ +    
Sbjct: 182 SIRVTDMSRKVELRQLLGAEDSLLSPSALVKKQGHFAGHQLFESGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD C+APGGKT  +   ++   +TALD+   +LE +  N  RL L      
Sbjct: 242 LAIEGEEQILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAARLGLADKITT 301

Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L  
Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +
Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G I ITP++ E         DGFF    R++ +
Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438


>gi|229552470|ref|ZP_04441195.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539841|ref|YP_003174340.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
           [Lactobacillus rhamnosus Lc 705]
 gi|229314207|gb|EEN80180.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151517|emb|CAR90489.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
           [Lactobacillus rhamnosus Lc 705]
          Length = 446

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 195/465 (41%), Gaps = 46/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N RL++   L+ VM K       LD          L  RD  L+  IV   ++  
Sbjct: 1   MTPN-NPRLLAVQTLTRVMGKGGYSNLTLDHVITKYQ---LDSRDAGLLTNIVYGVIQHQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + +   +    ++ LL+ SV Q+ YLD V   AV   + E AK+   ++ 
Sbjct: 57  LTLDYLLAPFVKT--RQLDTWVRCLLQTSVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAGI-------SIIPEWFKERLENFYGKERVLAISDAC 172
            AK V  +LR+  R        IA         S  P W  ++L+   G+ +   I  A 
Sbjct: 114 VAKFVTGVLRQAQRSGYPDPMTIADPIQRLAITSSTPVWLVKKLQAQLGETKTAKILAAI 173

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224
             P +  + V     T A  L A+              + L      +     FA+G++ 
Sbjct: 174 NQPAHASIRVNTTKTTAAALLKALQPQFPALKESPLTPVGLVAPGGHLAGTREFADGLYT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT  +        G +VTALD+   ++  +
Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293

Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           + N  RL L        MDA         + FD +LVDAPCS  G IRR P++ +T+  +
Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTKQPE 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D+      Q  +L      +K GG + +S C++ K+++++VV   L + P   E VP+ +
Sbjct: 354 DLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHP-EFEQVPVLT 412

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +            +++ PD  +         DGFF  +L R
Sbjct: 413 LKPLAKTHGAPA-----LQLFPDDYD--------TDGFFIASLIR 444


>gi|253731834|ref|ZP_04865999.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733545|ref|ZP_04867710.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253724433|gb|EES93162.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728599|gb|EES97328.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 435

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 188/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E+   I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEKTETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
           plutonius ATCC 35311]
 gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
           plutonius ATCC 35311]
          Length = 453

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 106/471 (22%), Positives = 198/471 (42%), Gaps = 49/471 (10%)

Query: 1   MKSGMN-----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           MK+         R  +   +  + +       LL+     S    L ++D  L   IV  
Sbjct: 1   MKNTNKNIKSSVRDAALQAIERIDKGGAYSNLLLNEMIQSSQ---LGEKDSRLFTEIVYG 57

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
           T+     ++  LD  +     + ++ ++ LL +S  Q+LYLD V D+AV++ AVE AKR 
Sbjct: 58  TISRKLLLEYYLDTFIHKR-KKVEHWVRMLLILSFYQLLYLDKVPDHAVINEAVEIAKR- 115

Query: 115 KENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
           + N    K VN ILR + R          + ++R++    +P W  ++L    G+     
Sbjct: 116 RGNLGTGKFVNGILRSLQRRGLPSLDEISDPIERLSIEISMPLWLVKKLIQQLGETETKK 175

Query: 168 ISDACISPLYIDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +  +     ++   +     +            + A   P     +      + +   F 
Sbjct: 176 LGLSLFEKSHVSGRIDSRKISRFDAIIQLQKEGIEASESPISPYGIIAEKGRLATSSLFR 235

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKR 274
           EG   +QD S+ +         +  VLD CAAPGGKT             K+ ALD+   
Sbjct: 236 EGKLTIQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGKIIALDIHDH 295

Query: 275 RLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           +L+ ++ N  R+ + +      +      +  P + FD +LVDAPCS  G +RR PD+ +
Sbjct: 296 KLKLIKENAVRMQVSSIIKLEKLDARKVKEVYPSEYFDRILVDAPCSGLGLMRRKPDIKY 355

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            +   DI K A  Q +++   +  +K GGI+ +S C++ +++++ V+   L+  P   ++
Sbjct: 356 RKTLQDIKKLAKIQEEIIESVVPTLKKGGILTYSTCTITQEENQHVIITFLKKHPEFKKI 415

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +        +   A   +  + + P   +         DGFF   ++++
Sbjct: 416 DII------GNEKVSAEVRDQMLTLYPHRWQ--------TDGFFICCMQKV 452


>gi|149020816|ref|ZP_01835345.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae
           SP23-BS72]
 gi|221232467|ref|YP_002511620.1| ribosomal RNA small subunit methyltransferase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225855165|ref|YP_002736677.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae JJA]
 gi|147930457|gb|EDK81440.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae
           SP23-BS72]
 gi|220674928|emb|CAR69504.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722386|gb|ACO18239.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pneumoniae JJA]
          Length = 437

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    L   D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNALLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A         L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|312871906|ref|ZP_07731988.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2062A-h1]
 gi|312873262|ref|ZP_07733318.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2052A-d]
 gi|311091273|gb|EFQ49661.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2052A-d]
 gi|311092483|gb|EFQ50845.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 437

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  E+ + ++ ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKAKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL      +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ +++L  ++  L 
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293

Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           RLH   + I++        +Y   + FD +LVDAPCS  G IRR P+V + +  +D+   
Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           +  Q  +L      +   G +V+S C++  +++E+VV++ L + P    L P        
Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 LS    I+I PD            DGFF     +
Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435


>gi|15903621|ref|NP_359171.1| rRNA methylase [Streptococcus pneumoniae R6]
 gi|15459245|gb|AAL00382.1| rRNA methylase [Streptococcus pneumoniae R6]
          Length = 438

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/451 (27%), Positives = 200/451 (44%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+     ++  
Sbjct: 8   ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     +   KLVN
Sbjct: 65  LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++    +  
Sbjct: 122 AVLRRILREDWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     L A         L +          FA+G   +QD S+ +    
Sbjct: 182 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +      
Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDRVQT 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q ++L  
Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +  GGI+ +S C++  +++ +VV+  L S P             K       +  +
Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436


>gi|310816801|ref|YP_003964765.1| ribosomal RNA small subunit methyltransferase B, putative
           [Ketogulonicigenium vulgare Y25]
 gi|308755536|gb|ADO43465.1| ribosomal RNA small subunit methyltransferase B, putative
           [Ketogulonicigenium vulgare Y25]
          Length = 417

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 144/438 (32%), Positives = 219/438 (50%), Gaps = 24/438 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +  R  + +LL+ V      L+    +      F  LS  D+   + +    LR  
Sbjct: 1   MSDSLIPRRAALNLLNAVTVDHRLLSECTAI------FDPLSPPDRARAQRLATSVLRAA 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D  L   L    P +   +Q  LR+ V +I       + VV+  V      K   +F
Sbjct: 55  SRADRWLKPHLKKRPPVQ---VQNALRLGVVEIAEGAAP-HGVVNDIVTLLADGKRTANF 110

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           A L N++LR+ +    +  +    +  +P+W +E L   +G   + AI  A      +DL
Sbjct: 111 AALANAVLRKGADLPQQWGKLA--LPQLPDWLREPLREAWGNSAINAIERAHFRGAPLDL 168

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T+  D   WA +L  ++LPTG +RL      + +LPGFAEG WWVQDA+A++PV+L G L
Sbjct: 169 TIPRDTADWAARLGGLVLPTGSVRLD-GHGMVSTLPGFAEGAWWVQDAAAALPVRLLGDL 227

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
                LD+CAAPGGKT QL  +GA+VTALD+S  RL+++  NL R +L A  +       
Sbjct: 228 RGQRALDICAAPGGKTMQLASAGAEVTALDLSANRLQRVAENLARTNLNATIVQ--GDAL 285

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 +D +++DAPCS+TGTIRRHPD+ + RD  +I      Q +++   +  + PGG 
Sbjct: 286 EFTTTGWDVIVLDAPCSATGTIRRHPDLPFARDGAEIGSLIALQAQMIDHALRLLNPGGR 345

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           ++F  CSL   + E  V++ L   P  + ++P      +    A  +SPEG +R+ PD  
Sbjct: 346 LLFCTCSLLPDEGEVQVEEALARHPG-LRVIPPELPEIE----ADWISPEGGVRLRPDYW 400

Query: 421 EKIDGVSSGMDGFFAVAL 438
                   GMDGF+   L
Sbjct: 401 ----PSLGGMDGFYMAVL 414


>gi|330832248|ref|YP_004401073.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
 gi|329306471|gb|AEB80887.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
          Length = 436

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 191/453 (42%), Gaps = 33/453 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR ++  +L  V  +       L+     S    LS +D+ L   +V  T+    
Sbjct: 3   NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 59

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    +  LL +S+ Q++YLD    +AVV+ AV  AKR      F
Sbjct: 60  TLEWYLAHFIE-DREKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 118

Query: 121 AKLVNSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI--S 174
              +   L +       +     +R++    +P W  + L   YG ER   I  +    +
Sbjct: 119 VNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 178

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
              + +T    +E  A +L A       + L +          F +G+  +QD ++ +  
Sbjct: 179 KASVRVTDGQQVEQLAEELGAQHSQLSPVGLVKSHGHFAGTDYFKKGLITIQDETSQLVA 238

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
              G   +  +LD CAAPGGKT  +   ++  KV ALD+   +L  +  N  RL L  + 
Sbjct: 239 PTLGIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENARRLGLEDKI 298

Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             +        +      FD +LVDAPCS  G IRR PD+ + + + D       Q ++L
Sbjct: 299 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 358

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GGI+ +S C++  ++++EV+Q+ L++ P   ++   +            + 
Sbjct: 359 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 410

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +G + ITP+  +         DGFF   LRR 
Sbjct: 411 VDGCLLITPEQYK--------TDGFFIGQLRRK 435


>gi|269940709|emb|CBI49090.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus TW20]
          Length = 435

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDAPDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|260914692|ref|ZP_05921158.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325]
 gi|260631291|gb|EEX49476.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325]
          Length = 443

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 208/458 (45%), Gaps = 43/458 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            + ++ R +++ ++  V+ +  SL+ L+           +  +D  L++ I     R LP
Sbjct: 10  NTALSTRAIAAQVILQVLDQGKSLSALIPEV-----QNQVKSQDLSLLQEICFGICRVLP 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R++ ++  ++   L  K   +  LL V + Q+LY  +  +A VD  V  A    ++  F 
Sbjct: 65  RLEHIIKQLVDKPLKGKTRIVHCLLLVGLYQLLYTRIPAHAAVDEVVN-ATTSLKSDSFR 123

Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            L+N +LRR  RE+  +         ++ P+WF  RL+  Y   R +  ++    P+++ 
Sbjct: 124 GLINGVLRRFLREQDTILANVDKHWQTLHPDWFVNRLKKVYPNWREIIEANNQKPPMWLR 183

Query: 180 LTVK-FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIP 233
           +  +   +ET+   L A  + +                +  LP F +G   VQD +A   
Sbjct: 184 VNQQKNSLETYRSLLQAQGVESEVADSSCALRLLQPLGVAQLPYFDQGAVTVQDLNAQWS 243

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
             L    N   +LD CAAPGGKT         A+V ALDV   RL+++  NL R+   A 
Sbjct: 244 ALLLEPQNGELILDACAAPGGKTTHILENAPQAQVVALDVEPNRLKRVYENLTRMQQKA- 302

Query: 292 DIIEMDAFDYCPK--------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            +I  DA                FD +L+DAPCS+TG IRRHPD+ W R   DI +    
Sbjct: 303 QVICGDATQPEQWLSQISDSAVQFDRILLDAPCSATGVIRRHPDIKWLRQDADIPQLVQL 362

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L    + +KP G ++++ CS+  +++   +++ L+++    +L PL      S   
Sbjct: 363 QSQILQALWALLKPSGTLLYATCSVLPEENALQIEQFLQNN-TDAKLEPLPFDLPDSAI- 420

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    ++  P          +G DGF+   L++L
Sbjct: 421 --------GVQFLP--------KENGGDGFYYAKLKKL 442


>gi|319757554|gb|ADV69496.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14]
          Length = 436

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 190/453 (41%), Gaps = 33/453 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR ++  +L  V  +       L+     S    LS +D+ L   +V  T+    
Sbjct: 3   NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 59

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    +  LL +S+ Q++YLD    +AVV+ AV  AKR      F
Sbjct: 60  TLEWYLAHFIE-DREKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 118

Query: 121 AKLVNSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI--S 174
              +   L +       +     +R++    +P W  + L   YG ER   I  +    +
Sbjct: 119 VNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 178

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
              + +T    +E  A +L A       + L +          F EG+  +QD ++ +  
Sbjct: 179 KASVRVTDGQQVERLAEELGAQHSQLSPVGLVKPHGHFAGTDYFKEGLITIQDETSQLVA 238

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                  +  +LD CAAPGGKT  +   ++  KV ALD+   +L  +  N  RL L  + 
Sbjct: 239 PTLDIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENARRLGLADKI 298

Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             +        +      FD +LVDAPCS  G IRR PD+ + + + D       Q ++L
Sbjct: 299 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 358

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GGI+ +S C++  ++++EV+Q+ L++ P   ++   +            + 
Sbjct: 359 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 410

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +G + ITP+  +         DGFF   LRR 
Sbjct: 411 VDGCLLITPEQYK--------TDGFFIGQLRRK 435


>gi|146318081|ref|YP_001197793.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
 gi|146320260|ref|YP_001199971.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
 gi|253751274|ref|YP_003024415.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
           SC84]
 gi|253753175|ref|YP_003026315.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
           P1/7]
 gi|253754998|ref|YP_003028138.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
           BM407]
 gi|145688887|gb|ABP89393.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
 gi|145691066|gb|ABP91571.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
 gi|251815563|emb|CAZ51146.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus suis SC84]
 gi|251817462|emb|CAZ55203.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus suis BM407]
 gi|251819420|emb|CAR44892.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus suis P1/7]
 gi|292557843|gb|ADE30844.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1]
          Length = 437

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 190/453 (41%), Gaps = 33/453 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR ++  +L  V  +       L+     S    LS +D+ L   +V  T+    
Sbjct: 4   NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    +  LL +S+ Q++YLD    +AVV+ AV  AKR      F
Sbjct: 61  TLEWYLAHFIE-DREKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 119

Query: 121 AKLVNSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI--S 174
              +   L +       +     +R++    +P W  + L   YG ER   I  +    +
Sbjct: 120 VNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 179

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
              + +T    +E  A +L A       + L +          F EG+  +QD ++ +  
Sbjct: 180 KASVRVTDGQQVERLAEELGAQHSQLSPVGLVKPHGHFAGTDYFKEGLITIQDETSQLVA 239

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                  +  +LD CAAPGGKT  +   ++  KV ALD+   +L  +  N  RL L  + 
Sbjct: 240 PTLDIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENARRLGLADKI 299

Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             +        +      FD +LVDAPCS  G IRR PD+ + + + D       Q ++L
Sbjct: 300 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 359

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GGI+ +S C++  ++++EV+Q+ L++ P   ++   +            + 
Sbjct: 360 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +G + ITP+  +         DGFF   LRR 
Sbjct: 412 VDGCLLITPEQYK--------TDGFFIGQLRRK 436


>gi|282910789|ref|ZP_06318592.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282325394|gb|EFB55703.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|312438406|gb|ADQ77477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus TCH60]
          Length = 435

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++   ++   D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLRPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|327462453|gb|EGF08778.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1057]
          Length = 438

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 123/453 (27%), Positives = 192/453 (42%), Gaps = 38/453 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +R      L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEILEEVFEERAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  ++     +    L  LL +S+ Q+LYLD +  +AVV  AVE AK  K      K VN
Sbjct: 65  LSHLIE-DRDKLDSWLYILLMISLYQMLYLDKIPQHAVVHEAVEIAKIRKH--GSEKFVN 121

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR                +R +    +P W  + L   YG+ER LAI  +    S  
Sbjct: 122 ALLRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKALIEEYGEERALAIFASLFVRSKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T           L A         L +          F  G   +QD S+ +    
Sbjct: 182 SIRVTDMSRKAELHQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD C+APGGKT  +   ++   + ALD+   +LE +  N +RL L      
Sbjct: 242 LAIEGEEQILDTCSAPGGKTVHMASYLTSGHIIALDLYDHKLELVEENAERLGLADKITT 301

Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L  
Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +
Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G I ITP++ E         DGFF    R++ +
Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438


>gi|260437316|ref|ZP_05791132.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
           crossotus DSM 2876]
 gi|292810228|gb|EFF69433.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
           crossotus DSM 2876]
          Length = 443

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/458 (23%), Positives = 190/458 (41%), Gaps = 32/458 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R +    L  +  K      +L        ++ L   D+  +   +  T+   
Sbjct: 1   MNQNVNTRNIILDALIEINEKDRFTHIVLPEVLK--KYQYLDNIDRSFISRTILGTVERK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +++    + + + K  ++ +LR+S  Q++Y++ V D+AV + AV  + + K    
Sbjct: 59  ITLDYIINLFSKTPVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVRLSVK-KGFTA 117

Query: 120 FAKLVNSILRRVSREKIELLQRI--AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
               VN +LR ++REK ++            P W  ++    YGKE   AI  A  S   
Sbjct: 118 LKGFVNGVLRTIAREKNKIEMPQELWLKYSTPGWIVDKWLKEYGKENTEAILKAQYSKRP 177

Query: 178 IDLTV---KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + +         E    +L A  +              E  + +  L  FA G ++VQD 
Sbjct: 178 LTVRCNFNHCTREELVKRLTAENVRAKVIEEPDCALEIEGFDYLNKLNTFANGDFFVQDL 237

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +         +  V+DLCAAPGGK+      + +   V A DVS  ++  +  N+DR
Sbjct: 238 SSMMVCYAINPEKDSYVIDLCAAPGGKSLHIAEFMDNTGFVEARDVSDNKVMMINENIDR 297

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L+L     +  DA        +  D V+ D PCS  G + + PD+ +    +   + +  
Sbjct: 298 LNLCNIKAVVKDATVKWEDSVEKADVVIADLPCSGLGILNKKPDIKYHASEEKCHELSEL 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+K+L     +VK GG   FS C+L+ +++   V+ +L        LV       +  D 
Sbjct: 358 QKKILDNSKEYVKHGGKFCFSTCTLNYEENMGNVEHILS--YGDYVLVDFED---RVPDN 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 +G + I PD        ++  DGFF    RR 
Sbjct: 413 MKKYYKKGILEIIPD-------ENNNFDGFFIALFRRK 443


>gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis M23590]
 gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis M23590]
          Length = 435

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 190/454 (41%), Gaps = 44/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +   +  ++ +       ++        + LS  D+ L   +V  T++    +D  
Sbjct: 5   VRRHALDSIHAILNEGAYSNLEINDVLSS---QDLSAVDKGLYTELVYGTIKRKFTLDYY 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +VN
Sbjct: 62  LRPFVQTKIKG---WVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAK-HRGGPHNGNIVN 117

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           +ILR++ R  +          +R++    +P+W  +     YG  +   I  A ++P   
Sbjct: 118 AILRQIMRSDLPNVDDITDEKKRMSIAYSLPKWIVDHWVTHYGLAQTHRIGQALLTPTET 177

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASA 230
            +       +    + A+      +         L      ++    F EG+  +QD S+
Sbjct: 178 TVRANIVKASINDIIYALEQDGYTVTKDSDILSCLHIQGRPVIEARAFKEGLISIQDKSS 237

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
               QL     +  VLD C+APGGK   +         V A D+   ++  ++ N+ +L 
Sbjct: 238 MFVAQLANLQAHDKVLDACSAPGGKACHMAEILAPTGSVDATDIHAHKINLIKYNIKKLG 297

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           L      + DA      +++D +LVDAPCS  G +R  P++ +T+  +        Q  +
Sbjct: 298 LNNVHAFQHDATQ-PYTEMYDKILVDAPCSGLGVLRHKPEIKYTQSKEGTQALVDLQLNI 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG +++S C++++ ++E V+   L+ +        ++    + I      
Sbjct: 357 LNNVKHHLKPGGTIIYSTCTIEQLENENVIYSFLKENKDFEFETMIHPQTGEQI------ 410

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++I P             DGFF   ++R 
Sbjct: 411 ---KTLQILPQDF--------NSDGFFITKIKRK 433


>gi|94498065|ref|ZP_01304628.1| Fmu (Sun) [Sphingomonas sp. SKA58]
 gi|94422500|gb|EAT07538.1| Fmu (Sun) [Sphingomonas sp. SKA58]
          Length = 414

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 145/437 (33%), Positives = 209/437 (47%), Gaps = 30/437 (6%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             LL  V+R+   L   L       A + L + D+ L  AI    LR LP +DA++D   
Sbjct: 1   MRLLDAVLRRGEPLELAL-----HGAAQGLPREDRALTHAIAAEVLRHLPDLDALIDGAT 55

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
              LP      + +LR+++AQ L +D   +A +  A+     D   R     V   + R 
Sbjct: 56  RQILPD-DAKARMVLRIALAQTLRMDTPPHAAIATALPLV--DGGPRKLVHGVFGTVTRG 112

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET--W 189
                +          +P     R  + +G     A + A      +D+T++   ET  W
Sbjct: 113 QPALPDP-------PTLPAEVLARWSDQWGAAMPQAAAHAYAVRPPVDVTLRDASETARW 165

Query: 190 AHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
              L+      G +RL   P     +I +LPGFAEG WWVQD +A+ P +L G  +    
Sbjct: 166 TDALDGASFAPGHVRLPTHPVDGNGAIPALPGFAEGAWWVQDIAAACPARLLGKGDGRQA 225

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           LDLCAAPGGKT Q+  +G +V A+D SK+RLE+L  NL R  L A DI+  D   + P  
Sbjct: 226 LDLCAAPGGKTMQMAAAGWRVIAVDQSKKRLERLSENLARTGL-AADIVAADLRQWQPLA 284

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
             DA+L+DAPCS+TG  RRHPDVL       I   A  Q +LL +   ++ PGG +V++ 
Sbjct: 285 PVDAILLDAPCSATGIYRRHPDVLHRIGLRQIADLAELQAQLLARAADWLTPGGRLVYAT 344

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CSL++ + E+ + + L + P       L+      +   MA  P+GW+R  PD L     
Sbjct: 345 CSLEQAEGEDQIARFLDARPDFA----LDPIATSELPEGMAPDPQGWLRTLPDTLASA-- 398

Query: 426 VSSGMDGFFAVALRRLI 442
              G DGFF   L R  
Sbjct: 399 --GGTDGFFIARLVRRA 413


>gi|300811705|ref|ZP_07092180.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497332|gb|EFK32379.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 438

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 202/458 (44%), Gaps = 44/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  NAR V+   L  V+ +       L+     +    L   +  L   +V  T+++ 
Sbjct: 1   MKT--NARTVALDTLMKVINQGSYSNISLNHALKAAK---LPGEESRLATNLVYGTIQYQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L  ++ + L      ++ LL +S  QI +LD V + AV+D A + AK     + 
Sbjct: 56  LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKGYGRPKS 113

Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173
              +LVN ILR + R +  L ++ A         +P W  +     +GK R   I  +  
Sbjct: 114 SGYRLVNGILRSLLRRREVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226
           S     I ++   D +     L+          L     ++          F +G   VQ
Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+  + F    N   LD C+APGGKT Q    +   +VTALD+ +++L  ++ N  
Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293

Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+ +     +  +DA     Y   + FD +L+DAPCS  G +RR P++ +T+  +DI   
Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L +    +K GG +V+S CS+  +++EE V+K L + P             K 
Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + A   +P+G ++I PD            DGFF    
Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434


>gi|160893330|ref|ZP_02074117.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50]
 gi|156865022|gb|EDO58453.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50]
          Length = 449

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 192/465 (41%), Gaps = 41/465 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     +R +   +L  + +        L      + F  ++++++  +  +        
Sbjct: 1   MSKT--SREIVLDILLDIEKNDRFAGEALGEALRANQF--MNKKERAYIGRLTEGVTEQK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            R+D +L+      + + K  ++ +LR++  +I Y+D V D A  +  V    + +  R 
Sbjct: 57  IRLDYILNQFSKVKVKKCKPVIRCILRMAAYEIFYMDSVPDEAACNEYVNLTAK-RGFRT 115

Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170
               +N +LR V R K  ++           ++    IPE   + L N Y  E++  I  
Sbjct: 116 LKGYMNGVLRNVCRNKAAIIFPKKEDGLEAYLSVKYSIPEELVKFLLNDYSAEQLEQILQ 175

Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221
           A  +     + V     T     N                   +    + I  +PGF EG
Sbjct: 176 AGETNRGTTVRVNTMHTTLEEFRNNLIEKGIKVEKGYYNPTSLIISGYDYIRMVPGFHEG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278
           ++ VQD S+S+ V   G      +LD+CAAPGGKT            V A D+S+ +++K
Sbjct: 236 LFTVQDESSSLQVLAAGIRPGNVILDVCAAPGGKTMYAAERTGEQGHVYARDISEEKIDK 295

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           L  NL RL ++       +A +  PK     D VL D PCS  G + R  D+ +    D 
Sbjct: 296 LEENLGRLEIHNVTTKVWNAMETDPKMIEKADVVLADLPCSGLGVMARKNDIKYHVTADS 355

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           I + A  Q+ +L    S+VKPGG ++FS C++D+ ++EE V+  L+      E   L S 
Sbjct: 356 ISELAEIQKNILDACASYVKPGGTLIFSTCTIDRTENEENVEIFLKRH----EEYYLESL 411

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +       +G+I +               DGFF   LRR 
Sbjct: 412 APYLPEKLKERGEKGYITLL--------QGIDHCDGFFISRLRRK 448


>gi|312871585|ref|ZP_07731677.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 3008A-a]
 gi|311092810|gb|EFQ51162.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 3008A-a]
          Length = 437

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  E+ + ++ ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKTKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL      +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ +++L  ++  L 
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293

Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           RLH   + I++        +Y   + FD +LVDAPCS  G IRR P+V + +  +D+   
Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           +  Q  +L      +   G +V+S C++  +++E+VV++ L + P    L P        
Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 LS    I+I PD            DGFF     +
Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435


>gi|256851318|ref|ZP_05556707.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660742|ref|ZP_05861657.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 115-3-CHN]
 gi|282933237|ref|ZP_06338624.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 208-1]
 gi|297206188|ref|ZP_06923583.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii JV-V16]
 gi|256616380|gb|EEU21568.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548464|gb|EEX24439.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 115-3-CHN]
 gi|281302741|gb|EFA94956.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 208-1]
 gi|297149314|gb|EFH29612.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii JV-V16]
          Length = 437

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 122/459 (26%), Positives = 209/459 (45%), Gaps = 45/459 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR V+   L  V +++      L     ++ F   SQ+DQ  V  +V  T+++ 
Sbjct: 1   MTNS--ARAVALATLIKVFKQKGYSNLSLSHALNENNF---SQKDQAFVTQLVYGTIQYQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRD-KENR 118
             ++  L  +L + L      L+ LL +SV Q+++L  V + AV+D A + AK   K+N 
Sbjct: 56  LFLEYQLKDLLRTKLKED--YLKPLLLMSVYQLIFLNRVPNRAVLDEANKLAKSFGKKNS 113

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISII------PEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR   R    L      +  +      PEW  +     +G +R   I  + 
Sbjct: 114 SGYRLVNGILRSFLRRGQVLPSPKDPVHFLSIKESMPEWLVQYFIKNWGLKRTEKILPSL 173

Query: 173 ISPLYIDLTVKFD------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  + +         I +   +  ++   T       +  SIV+   F  G   +Q
Sbjct: 174 NKRAENSIRIAKGANQTQIINSLKKQGYSLTESTLADNCFLVNHSIVNTDEFKAGQITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+ V  F    N  VLD CAAPGGKT+Q    +   KV +LD+ K++L  ++   +
Sbjct: 234 DEAASLVVDCFDLQENDYVLDTCAAPGGKTSQLAENLPQGKVISLDIHKKKLNLIKKYAE 293

Query: 285 RLHLY-AEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+H+    + + +DA     +     FD +LVDAPCS  G +RR P++ + +   D+   
Sbjct: 294 RMHVDERVETLALDARKAAEHFSDTKFDKILVDAPCSGLGLLRRKPEIRYDKTMKDVHNL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L      +K  G +V+S CS+  +++E+V+ + L+  P   E++P+  +  +S
Sbjct: 354 ARIQLGILNSAAQLLKKNGELVYSTCSITIEENEQVIAEFLKKHP-EFEIMPITLSKVQS 412

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            +          ++I PD          G DGFF   ++
Sbjct: 413 KES---------LKILPDTY--------GSDGFFIAKMK 434


>gi|256849782|ref|ZP_05555213.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|262046519|ref|ZP_06019480.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus MV-3A-US]
 gi|312984157|ref|ZP_07791503.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus CTV-05]
 gi|256713271|gb|EEU28261.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|260572968|gb|EEX29527.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus MV-3A-US]
 gi|310894376|gb|EFQ43452.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           crispatus CTV-05]
          Length = 453

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 207/454 (45%), Gaps = 43/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR VS   L  V+ +       L+     S    LS  DQ L   IV  T+++   ++  
Sbjct: 19  ARAVSLETLIKVLDQGSYSNISLNNSLKHS---NLSIADQNLATNIVYGTIQYRLFLEYQ 75

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKLV 124
           L  ++ + L  K   ++ LL +S+ Q+++LD V D AV+D A + AK+  K +    +LV
Sbjct: 76  LKGLVRTKLTEK--YIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLV 133

Query: 125 NSILRRVSRE------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177
           N ILR  +R       +   ++ ++    +PEW  + L + +G ++  ++ ++   P   
Sbjct: 134 NGILRSFTRRGVILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKN 193

Query: 178 -IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDASAS 231
            + ++   D E    +L                +      I     F EG   +QD +AS
Sbjct: 194 SVRISKLADKEQVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLFEEGKLTIQDEAAS 253

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           + V+ F    +  VLD C+APGGKT Q    +    VTALD+  ++L  +R N  R+H+ 
Sbjct: 254 LVVEAFDFEQDEHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKLRLVRDNAQRMHVA 313

Query: 290 A-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                   DA           F  +LVDAPCS  G +RR P++ +T+   D+      Q 
Sbjct: 314 NKVKTKACDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQL 373

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L    S +K  G +V+S CS+  +++EEVV+K L++ P   ELVP      +      
Sbjct: 374 AILTAVSSLLKKNGELVYSTCSISMEENEEVVKKFLQAHP-DFELVPFKLTKLE------ 426

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             S  G ++I PD+         G DGFF    +
Sbjct: 427 --SKTGMLKIMPDL--------DGNDGFFIAKFK 450


>gi|319947546|ref|ZP_08021776.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
 gi|319746234|gb|EFV98497.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
          Length = 440

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 204/457 (44%), Gaps = 41/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M++   AR V+   L  + +        L    G      LS  D+ LV  IV  T+   
Sbjct: 8   MQT---AREVALSTLGEIFQDGAFSNISLKKSLGK---ATLSDVDKSLVTEIVYGTVSRK 61

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    +  LL +S+ Q +YL+ +  +AVV  AVE AK+ K  + 
Sbjct: 62  LTLEWYLSHFVA-DRDQVDPWIYHLLLMSLYQFVYLEKIPLHAVVHEAVELAKQRK--KG 118

Query: 120 FAKLVNSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN++LR++         +   + +R++    +P W  ++L + YG+ER +AI ++ 
Sbjct: 119 SEKYVNALLRKMLREELPSIDQIKRINKRLSIRYSLPVWLVKKLMDEYGEERAIAIFESL 178

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   + +      E    +L A         L +          F +G   +QD ++
Sbjct: 179 YVRNKASVRVVDLDKKEDIKEQLQASDSLLASTALVKENGYFAGSDYFKQGKLTIQDETS 238

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKT      +   +VTALD+   +L+ ++ N +RL +
Sbjct: 239 QLVAPALEVQPSDQVLDACAAPGGKTTHLASYLVDGQVTALDLYDHKLQLIQENAERLGV 298

Query: 289 -YAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++DA           FD +LVDAPCS  G IRR PD+ + +D  D       Q
Sbjct: 299 ADKIQTKKLDASKVFEAFGADAFDKILVDAPCSGIGLIRRKPDIKYNKDNADFASLQAIQ 358

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      V+  GI+V+S C++  +++ +VV + L + P   ELVPL+          
Sbjct: 359 LEILDGVCQSVRKDGIIVYSTCTIIGEENFDVVDQFLETHPN-FELVPLDHE-------R 410

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    RR+
Sbjct: 411 KDILKDGCILITPELY--------GSDGFFISRFRRI 439


>gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
           siraeum V10Sc8a]
          Length = 439

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 194/463 (41%), Gaps = 47/463 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+   AR ++  LL  +  +      +LD  +  +      +RD+    A+    L   
Sbjct: 1   MKT---ARQITLDLLIRMDTQGAYSNIILDHAFTQNDA---DRRDKAFSAALFYGVLERR 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D ++ +       + K ++ ++LR+   Q+L+++ V D A V+ +V         + 
Sbjct: 55  MTLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTK- 113

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
               VN+ILR   R + ++           +     P+W  ++  +  G++R + + ++C
Sbjct: 114 AKGYVNAILRTFLRNEKQIDYGNLTGEAKLSIEYSCPKWLVKKWNSELGEQRAMQMINSC 173

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVW 223
                I   V       +    +L +  +      L +        + I     + +G++
Sbjct: 174 FGRPPIYARVNTVRYTVDDVIGELESEGISATKNSLIDACIELANTKGIEQSSAYKKGMF 233

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            +QD S+ I  ++   + N +V+DLC+APGGKT      +    ++ + D+   ++  + 
Sbjct: 234 HIQDISSQICCKIAAPVFNETVVDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIA 293

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
               RL L      E DA  + P     D V+ D PCS  G IRR P++ + +    +  
Sbjct: 294 NTAKRLDLTIITAAENDATKFNPGIPKADRVICDVPCSGLGVIRRKPEIKY-KPMKQLET 352

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-ELVPLNSAYW 398
               QRK++     +VKPGG +V+S C++ + +++++V + L+     V  +VPLN    
Sbjct: 353 LPDTQRKIINNAAEYVKPGGTLVYSTCTVSRTENDDIVDEFLKEHSDFVPVVVPLNIKGL 412

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +                       +       DGFF   LR++
Sbjct: 413 ED-----------------SYKRTMLPCDVNGDGFFTATLRKV 438


>gi|256843396|ref|ZP_05548884.1| ribosomal small subunit methyltransferase B [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614816|gb|EEU20017.1| ribosomal small subunit methyltransferase B [Lactobacillus
           crispatus 125-2-CHN]
          Length = 453

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 126/454 (27%), Positives = 206/454 (45%), Gaps = 43/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR VS   L  V+ +       L+     S    LS  DQ L   IV  T+++   ++  
Sbjct: 19  ARAVSLETLIKVLDQGSYSNISLNNSLKHS---NLSIADQNLATNIVYGTIQYRLFLEYQ 75

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKLV 124
           L  ++ + L  K   ++ LL +S+ Q+++LD V D AV+D A + AK+  K +    +L 
Sbjct: 76  LKGLVRTKLTEK--YIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLA 133

Query: 125 NSILRRVSRE------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177
           N ILR  +R       +   ++ ++    +PEW  + L + +G ++  ++ ++   P   
Sbjct: 134 NGILRSFTRRGVILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKN 193

Query: 178 -IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDASAS 231
            + ++   D E    +L                +      I     F EG   +QD +AS
Sbjct: 194 SVRISKLADKEQVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLFEEGKLTIQDEAAS 253

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           + V+ F    +  VLD C+APGGKT Q    +    VTALD+  ++L  +R N  R+H+ 
Sbjct: 254 LVVEAFDFEQDEHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKLRLVRDNAQRMHVA 313

Query: 290 A-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                   DA           F  +LVDAPCS  G +RR P++ +T+   D+      Q 
Sbjct: 314 NKVKTKACDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQL 373

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L    S +K  G +V+S CS+  +++EEVV+K L++ P   ELVP      +      
Sbjct: 374 AILTAVSSLLKKNGELVYSTCSISMEENEEVVKKFLQAHP-DFELVPFKLTKLE------ 426

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             S  G ++I PD+         G DGFF    +
Sbjct: 427 --SKTGMLKIMPDL--------DGNDGFFIAKFK 450


>gi|104774278|ref|YP_619258.1| putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423359|emb|CAI98212.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 438

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 200/458 (43%), Gaps = 44/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  NAR V+   L  V+ +       L+     +    L   +  L   +V  T+++ 
Sbjct: 1   MKT--NARTVALDTLMKVINQGSYSNISLNHALKAAK---LPGEESRLATNLVYGTIQYQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L  ++ + L      ++ LL +S  QI +LD V + AV+D A + AK     + 
Sbjct: 56  LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKS 113

Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173
              +LVN IL  + R    L ++ A         +P W  +     +GK R   I  +  
Sbjct: 114 SGYRLVNGILHSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226
           S     I ++   D +     L+          L     ++          F +G   VQ
Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+  + F    N   LD C+APGGKT Q    +   +VTALD+ +++L  ++ N  
Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293

Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+ +     +  +DA     Y   + FD +L+DAPCS  G +RR P++ +T+  +DI   
Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L +    +K GG +V+S CS+  +++EE V+K L + P             K 
Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + A   +P+G ++I PD            DGFF    
Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434


>gi|289168457|ref|YP_003446726.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6]
 gi|288908024|emb|CBJ22864.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6]
          Length = 438

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 123/451 (27%), Positives = 203/451 (45%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+     ++  
Sbjct: 8   ARSLALAVLEDVFINQAYSNIALNKHLKGSQ---LSVADKGLVTELVYGTVARKLTLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +S  Q+ YL+ + D+AVV+ AVE AK     +   KLVN
Sbjct: 65  LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK--VRKKGSEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++    +  
Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAQAIFESLLVRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     L A         L +          FA+G   +QD S+ +    
Sbjct: 182 SIRVTDLGRKEEIQALLEASESSLSPSGLVKEQGHFAGHDLFADGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +      
Sbjct: 242 LDLQGDEQVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q ++L  
Sbjct: 302 QKLDARKVHEFFGQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +VVQ  L S P   ++   +            +  +
Sbjct: 362 VCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEFEQVTLEHEC--------KDIMKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436


>gi|254437147|ref|ZP_05050641.1| Methyltransferase small domain family [Octadecabacter antarcticus
           307]
 gi|198252593|gb|EDY76907.1| Methyltransferase small domain family [Octadecabacter antarcticus
           307]
          Length = 410

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 151/427 (35%), Positives = 222/427 (51%), Gaps = 19/427 (4%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V  +      LL    G+ A + LS  D+   + +   TLR L R D +L   L  
Sbjct: 1   MLDQVTGEGK----LLPELIGEGALQHLSPEDRARAQRLTTETLRGLARADRMLARFLQK 56

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           + P    S++ +LR+   ++   + A Y VV+  VE   R+K       LVN++LR+V+ 
Sbjct: 57  TPP---LSVRNVLRLCTVELAGGE-AAYGVVNAGVEMVARNKRTSSMKGLVNAVLRKVAA 112

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
           E  E   ++A    +P W +  L++ YG E V AI  A  +   +D+T K D +     L
Sbjct: 113 EGPEGWAQLAT-PRMPGWLRSPLKDAYGPEIVAAIETAQFAGAPLDITAKGDPQAANETL 171

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
              +LPTG IRL++    + +LPGF  G WWVQDA+A+IPVQ+        +LDLCAAPG
Sbjct: 172 KGEILPTGTIRLRDA-GQVSTLPGFESGDWWVQDAAAAIPVQILAPQKGEKILDLCAAPG 230

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313
           GKT QL ++GA VTA+D S+ R+ ++  NL R  L A  I             FDA+L+D
Sbjct: 231 GKTMQLAMAGADVTAVDSSEGRMIRVGENLKRTGLNATTITADAFAFTSGG--FDAILLD 288

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS+TGTIRRHPD+ + +D  +       Q +++   +S + PGG +VF  CSL   + 
Sbjct: 289 APCSATGTIRRHPDLPYAKDGSEFGILIHQQARMIDHALSLLNPGGRLVFCTCSLLPDEG 348

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E  V++ L        L    SA  +S       + +G +R+ PD          GMDGF
Sbjct: 349 EVQVEEALARHRG---LTVDASALDRSGIDPAWRTEDGGLRLRPDYWAD----KGGMDGF 401

Query: 434 FAVALRR 440
           + V LR+
Sbjct: 402 YIVQLRK 408


>gi|332362987|gb|EGJ40776.1| RNA methyltransferase Sun [Streptococcus sanguinis SK49]
          Length = 438

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 193/453 (42%), Gaps = 38/453 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +R      L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEILEEVFEERAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  ++     +    L  LL +S+ Q+L+LD +  +A V  AVE AK  K  R   K VN
Sbjct: 65  LSHLIE-DRNKLDNWLYILLMLSLYQMLFLDKIPQHAAVHEAVEIAKIRK--RGSEKFVN 121

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR                +R +    +P W  + L   +G+ER LAI  +    S  
Sbjct: 122 ALLRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T           L A         L +          F  G   +QD S+ +    
Sbjct: 182 SIRVTDMSRKAELRQLLGAENSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD C+APGGKT  +   ++   +TALD+   +LE +  N +RL L      
Sbjct: 242 LAIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYNHKLELVEENAERLGLADKITT 301

Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L  
Sbjct: 302 KKLDATKVFETFGPDTFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +
Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHEI--------KDIVKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G I ITP++ E         DGFF    R++ +
Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438


>gi|223932608|ref|ZP_03624608.1| sun protein [Streptococcus suis 89/1591]
 gi|223898718|gb|EEF65079.1| sun protein [Streptococcus suis 89/1591]
          Length = 436

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 108/453 (23%), Positives = 189/453 (41%), Gaps = 33/453 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR ++  +L  V  +       L+     S    LS +D+ L   +V  T+    
Sbjct: 3   NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 59

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    +  LL +S+ Q++YLD    +AVV+ AV  AKR      F
Sbjct: 60  TLEWYLAHFIE-DREKLDTWIYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 118

Query: 121 AKLVNSILRRVSREKIELLQRIAGI----SIIPEWFKERLENFYGKERVLAISDACI--S 174
              +   + + +      ++R          +P W  + L   YG ER   I  +    +
Sbjct: 119 VNAILRKISQSTLPNPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 178

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
              + +T    +E  A +L A       + L +          F +G+  +QD ++ +  
Sbjct: 179 KASVRVTDGQQVERLAEELGAQHSQLSPVGLVKSHGHFAGTDHFKKGLITIQDETSQLVA 238

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                  +  +LD CAAPGGKT  +   ++  KV ALD+   +L  +  N  RL L  + 
Sbjct: 239 PTLDIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENAHRLGLEDKI 298

Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             +        +      FD +LVDAPCS  G IRR PD+ + + + D       Q ++L
Sbjct: 299 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 358

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GGI+ +S C++  ++++EV+Q+ L++ P   ++   +            + 
Sbjct: 359 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 410

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +G + ITP+  +         DGFF   LRR 
Sbjct: 411 VDGCLLITPEQYK--------TDGFFIGQLRRK 435


>gi|289551003|ref|YP_003471907.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180535|gb|ADC87780.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis HKU09-01]
          Length = 435

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/454 (21%), Positives = 190/454 (41%), Gaps = 44/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +   +  ++ +       ++        + LS  D+ L   +V  T++    +D  
Sbjct: 5   VRRHALDSIHAILNEGAYSNLEINDVLSS---QDLSAVDKGLYTELVYGTIKRKFTLDYY 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +VN
Sbjct: 62  LRPFVQTKIKG---WVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAK-HRGGPHNGNIVN 117

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           +ILR++ R  +          +R++    +P+W  +     YG  +   I  A ++P   
Sbjct: 118 AILRQIMRSDLPNVDDITDEKKRMSIAYSLPKWIVDHWVTHYGLAQTHRIGQALLTPTET 177

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASA 230
            +       +    ++A+      +         L      ++    F EG+  +QD S+
Sbjct: 178 TVRANIVKASINDIIDALEQDGYTVTKDSDILSCLHIQGRPVIEARAFKEGLISIQDKSS 237

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
               QL     +  VLD C+APGGK   +         V A D+   ++  ++ N+ +L 
Sbjct: 238 MFVAQLANLQAHDKVLDACSAPGGKACHMAEILAPTGSVDATDIHAHKINLIKYNIKKLG 297

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           L      + DA      +++D +LVDAPCS  G +R  P++ +T+  +        Q  +
Sbjct: 298 LNNVHAFQHDATQ-PYTEMYDKILVDAPCSGLGVLRHKPEIKYTQSKEGTQALVDLQLNI 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG +++S C++++ ++E V+   L+ +    E  P+              
Sbjct: 357 LNNVRHHLKPGGTIIYSTCTIEQLENENVIYSFLKENK-DFEFEPMIHPQTGEQI----- 410

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++I P             DGFF   ++R 
Sbjct: 411 ---KTLQILPQDF--------NSDGFFITKIKRK 433


>gi|325977628|ref|YP_004287344.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177556|emb|CBZ47600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 440

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 115/452 (25%), Positives = 194/452 (42%), Gaps = 36/452 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++  +L  V          L+ E   +    LS +D+ LV  IV  T+     ++ 
Sbjct: 8   QARGLALLVLENVFEDGAYSNIALNQELSHT---TLSPKDKSLVTEIVYGTVARKITLEW 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +    +  LL +S+ Q++YLD +  +AVV+ AV  AK     +   K V
Sbjct: 65  YLAHYI-KDRDKLDSWVYYLLMLSLYQLVYLDKIPAHAVVNDAVNIAKNRGNKKGAEKFV 123

Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175
           N++LRR         +      +R + +  +P W  ++L + +G+ER  AI  +    + 
Sbjct: 124 NAVLRRFTKEELPNPKTIKRKNKRYSVLYSLPVWLVKKLIDQFGEERAAAIMQSLFVRNK 183

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             I +T    +        A       + L +          FA G   +QD S+ +   
Sbjct: 184 ASIRVTDPDKLAEIKAATGAEQSILSPVGLVKTSGHFAGTDYFANGDITIQDESSQLVAP 243

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292
                 N  +LD CAAPGGKT  +   +    +TALD+   +L  +  N  RLH+     
Sbjct: 244 TLDIQGNEDILDACAAPGGKTTHMASYLKKGHITALDLYDHKLTLVMDNAKRLHVADKIS 303

Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +MD     ++     FD +LVDAPCS  G IRR PD+ + ++  D       Q ++L 
Sbjct: 304 TQKMDATTVHEHFVPDSFDKILVDAPCSGIGLIRRKPDIKYNKENQDFSALQEIQLQILD 363

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                ++ GGI+ +S C++  +++ +V+ K L + P        N    K       +  
Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIVR 415

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +G I ITP+  +         DGFF   ++R+
Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439


>gi|329667064|gb|AEB93012.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 434

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 192/453 (42%), Gaps = 41/453 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+   L  V  ++      L+ E        L   D+ L   IV  T+++   ++ 
Sbjct: 3   NARTVALETLIKVFNQKSYSNIALNNELIKH---DLKPADKALATRIVYGTIQYKIFLEY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123
            L  ++ + L      L+ LL +S  Q  +L+ V   A+ D A + AK+  K N    KL
Sbjct: 60  QLKPLIKTKLR--DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKKYSKRNSGSYKL 117

Query: 124 VNSILRRVSREKIELLQRIAGISI------IPEWFKERLENFYGKERVLAISDACISPLY 177
           +N ILR + R+   L      +         P+W  E L + +G+ +   I      P  
Sbjct: 118 INGILRALERQGEILPPTNDLVEYLSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAA 177

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + +     D E    +L                L      +     F  G   +QDA+
Sbjct: 178 NSIRMTTKESDFEEIKEELKKDNFSFEESSLTPHNLNLNKGGVAQTALFKNGKITIQDAA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287
           AS+ V  F    +  VLD C+APGGKT Q+  +     V ALD+ + +L  +R   +RLH
Sbjct: 238 ASLAVDAFDFKGSEQVLDACSAPGGKTVQIAENLTTGSVIALDIHENKLRLVRNAAERLH 297

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           +  +   +        +  FD +LVDAPCS  G IRR P++ + +  +DI   A  Q  +
Sbjct: 298 VSDKVKTKALDARKANQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKIQLAI 357

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +  GG +V+S C++  ++ E VV++ L+  P   EL+P+              
Sbjct: 358 LESVSGLLANGGELVYSTCTISYEEDEGVVKQFLKVHP-DFELIPVQVGKLP-------- 408

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +  +RI P         S G DGFF   L++
Sbjct: 409 -KQEMVRIFPS--------SDGSDGFFIAKLKK 432


>gi|149006597|ref|ZP_01830296.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74]
 gi|147761895|gb|EDK68858.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74]
          Length = 438

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 124/451 (27%), Positives = 200/451 (44%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+     ++  
Sbjct: 8   ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     +   KLVN
Sbjct: 65  LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++    +  
Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESLLVRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     L A         L +          FA+G   +QD S+ +    
Sbjct: 182 SIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +      
Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q ++L  
Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +  GGI+ +S C++  +++ +VV+  L S P             K       +  +
Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436


>gi|25028274|ref|NP_738328.1| hypothetical protein CE1718 [Corynebacterium efficiens YS-314]
 gi|259507332|ref|ZP_05750232.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314]
 gi|23493558|dbj|BAC18528.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165043|gb|EEW49597.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314]
          Length = 490

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 165/455 (36%), Gaps = 39/455 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L  V         +L         + L  RD      I   TLR L  +DA
Sbjct: 54  KPREIAYEVLDRVRTGDAYANLVLPRLLTK---QKLDTRDAGFATEITYGTLRNLGLLDA 110

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       +      +  +LR+   Q+L+  V D+A VD  V+     K+  +     N
Sbjct: 111 VISSAANRPVKDIDPEVLDVLRIGAYQVLFTRVEDHAAVDTTVKMVGGLKKF-NATGFAN 169

Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +++R ++R   E             R+A  +  PEW  +        E +     A    
Sbjct: 170 AVMRTITRTPAEQWLDKLEPEGEIARVAFRTAHPEWIAQSFSRLLPAEELEDALAADSER 229

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         +    +G+  VQD  + +
Sbjct: 230 PVVHLVARPGEISAEELALITGGEEGRYSPYAVYLEGGDPGDIDPVQQGLAAVQDEGSQL 289

Query: 233 PVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRL 286
             +           +   LDLCA PGGK A +        A +D  +    + +     +
Sbjct: 290 IARALVEAPVEGEDHGRWLDLCAGPGGKAALVGALARMDGARVDAVEVSDHRAKLVERSV 349

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +   D         +D  LVDAPCS  G +RR P+  W +   DI      Q +
Sbjct: 350 SGLPVKVHVGDGRTINLDDGYDRALVDAPCSGLGALRRRPEARWRKQESDIAPLNTLQYE 409

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   I+ V+PGG+VV+S CS D +++ EVV + L +       +P+      +    M 
Sbjct: 410 LLESAINRVRPGGVVVYSTCSPDLRETREVVDRALAA-------LPIEELDAAAFMPGMD 462

Query: 407 LSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + EG  +++ P           G D  F   LR+
Sbjct: 463 NTGEGKSVQMWPH--------RHGTDAMFVAILRK 489


>gi|182684677|ref|YP_001836424.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14]
 gi|182630011|gb|ACB90959.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14]
          Length = 438

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 125/451 (27%), Positives = 201/451 (44%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+     ++  
Sbjct: 8   ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +SV Q+ YLD + D+AVV+ AVE AK     +   KLVN
Sbjct: 65  LSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++    +  
Sbjct: 122 AVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESLLVRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     L A         L +          FA+G   +QD S+ +    
Sbjct: 182 SIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +      
Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q ++L  
Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +  GGI+ +S C++  +++ +VV+  L S P             K       +  +
Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436


>gi|225871064|ref|YP_002747011.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
           subsp. equi 4047]
 gi|225700468|emb|CAW94888.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus equi subsp. equi 4047]
          Length = 442

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 110/451 (24%), Positives = 197/451 (43%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  ++  +          L  +  +   + LS +D+ LV  IV  T+     ++  
Sbjct: 11  ARGQALLIVEDIFDHGAYSNLALKHQLAN---QFLSDKDKALVTEIVYGTISRKITLEWY 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     R    +  LL +S+ Q+ YLD V  +A+V+ AV  AK     R   KLVN
Sbjct: 68  LAHYIE-DRDRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVN 126

Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+++ +            +  A    +P W  ++L + +G+ER +AI ++    S  
Sbjct: 127 AVLRQLTNKPLPDIKSIKRKNKYYAVAYSVPVWLVKKLIDQFGEERAVAIMESLFVRSRA 186

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    ++       +         L +   +  +   F  G   +QD ++ +    
Sbjct: 187 SIRVTDLTKLDEIKQATGSEQSLLARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPT 246

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                   +LD C+APGGKTA +   ++  KV ALD+ + +L  +  N  RL +    + 
Sbjct: 247 LDIQGQEMILDACSAPGGKTAHIASYLTSGKVVALDLYEHKLALVNENAKRLGVADRIET 306

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             +D      +  K  FD +LVDAPCS  G IRR PD+ + ++  D  +    Q ++L  
Sbjct: 307 KVLDAREVHKHFAKNSFDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSS 366

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V+ K L+  P        N            +  +
Sbjct: 367 VCQTLRKGGIITYSTCTIFDEENFQVIDKFLQRHP--------NFEQVTLKHAQADIVKD 418

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G + ITP+  +         DGFF   +RR+
Sbjct: 419 GCLMITPEQYQ--------TDGFFIGQVRRV 441


>gi|312622710|ref|YP_004024323.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203177|gb|ADQ46504.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 431

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 197/463 (42%), Gaps = 63/463 (13%)

Query: 5   MNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           MN R  +  LL  + +K+ S +  LL+  +        +++D+ L   +V+  LR+   I
Sbjct: 1   MNTRQAAFFLLFEIEKKKFSGVDSLLEKFHQKLK----NEKDRALFVELVHGVLRYKNLI 56

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  ++FV    +      +  +LRV+  ++L+L+ + +YA V+ A E A +   N H   
Sbjct: 57  DYYINFVAKKGVK--DKRILNILRVATYELLFLEKIPEYATVNEACEIASKI--NPHLKA 112

Query: 123 LVNSILRRVSREKIE------------LLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
            VN+ILR + R K +                ++     P +  + LE  YG E+ + I +
Sbjct: 113 FVNAILRNIIRNKNQIEESLERIKDVNYKSYLSIKLSYPRFLIDYLEESYGLEKTIKILE 172

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGI-----RLKELPESIVSLPGFAEGV 222
              +     + +     ++ T   +L                +  L  +I     + +G 
Sbjct: 173 FLNTKPPQSIKINTKKTNVNTLTQELEKNGFKYEINSRNNEIVLILKGNIKETELYKKGY 232

Query: 223 WWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKL 279
           ++ QD ++S+              VLDLCAAPGGK      V    V A D+++ +L+ L
Sbjct: 233 FYFQDLASSLVVKSNQEDFERAKKVLDLCAAPGGKTFNCAEVIDGFVVACDINEHKLDIL 292

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           R N+ RL      + + DA  + P     FD V+ D PC+  G IR+ PD+ W +   DI
Sbjct: 293 RENILRLGFDNIIVAKNDAEVFNPDFAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDI 352

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q ++L     ++K GGI+ +S C+L K+++EE V + L        LV   +  
Sbjct: 353 ENLHELQVRILDNSAGYLKRGGILFYSTCTLGKKENEETVIEFLDKHK-DFSLVSQTT-- 409

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                            I PD  E         DGFF   LR+
Sbjct: 410 -----------------IFPDEFE--------CDGFFIAKLRK 427


>gi|126463525|ref|YP_001044639.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105189|gb|ABN77867.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 410

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 137/434 (31%), Positives = 212/434 (48%), Gaps = 29/434 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  LL  V+ +   L+  L    G +A       ++   + + +  LR L   D +
Sbjct: 5   ARGMAVTLLDAVLGEGKLLSQALADLPGTAA-----PAERARAQRLASSVLRHLGPADRL 59

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   L  + P    +++ +LR++  ++     A + VV  AV+ A+R +  +H A LVN+
Sbjct: 60  LAPHLRKAPP---LTVRNILRLATVEMAADGAAPHGVVSSAVDLARRGRRTQHLAGLVNA 116

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           +LRR++      L        +P W ++ L   +G+  V AI     +P  +DLT +  +
Sbjct: 117 VLRRIAPASFAGLP----AQHLPMWLRQPLVRRWGRAVVTAIEAVQAAPPPLDLTARPGL 172

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                 L               P  + +LPG+  G WWVQDA+A++ V+L       SV 
Sbjct: 173 SAPGEPLPTGSFRL------RAPGQVSALPGYEAGEWWVQDAAAALAVKLLDPQPGESVA 226

Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           DLCAAPGGKT QL  +GA+VTALD+S+ RL +LR NL R  L AE +             
Sbjct: 227 DLCAAPGGKTLQLAAAGARVTALDISEARLGRLRENLARTGLQAEVV--AADLLTWQGGP 284

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           F+A+L+DAPCS+TGTIRRHPD+ + +D  ++      Q  +L   +  + PGG +VF  C
Sbjct: 285 FEAILLDAPCSATGTIRRHPDLPFVKDGSELPGLVALQAAMLDHALGLLAPGGRLVFCTC 344

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL +++ E  +  +L   P      P              +  EG +R+ PD   +    
Sbjct: 345 SLLEEEGEAQLAALLERHPELTVERPTLPGV-----EPDWIGAEGGLRLRPDFWAEA--- 396

Query: 427 SSGMDGFFAVALRR 440
             GMDGFF   +RR
Sbjct: 397 -GGMDGFFMARVRR 409


>gi|166032716|ref|ZP_02235545.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC
           27755]
 gi|166027073|gb|EDR45830.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC
           27755]
          Length = 433

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/463 (20%), Positives = 185/463 (39%), Gaps = 54/463 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M + +N R +    L  + R        L        ++ L +R++  +  +V  TL   
Sbjct: 1   MATQVNVREIILETLLLITRDGEYSHIALKNVL--DKYQYLEKRERAFITRVVEGTLERQ 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++      + ++K  ++ +LR SV Q+ Y+D V D AV + AV+ A + K   +
Sbjct: 59  IEIDYIINQFSKVKVNKQKPVIRTILRSSVYQLKYMDHVPDSAVCNEAVKLAGK-KGFVN 117

Query: 120 FAKLVNSILRRV--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
               VN +LR +          +    +  ++    +P W  E+  + YGKE V  +  A
Sbjct: 118 LKGFVNGVLRNISRNLDMLSYPDPSNEIACLSVRYSLPMWMVEKWISVYGKETVEKMGKA 177

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE---------LPESIVSLPGFAEGV 222
            +    + +     + +       +       R              + +  L  F +G 
Sbjct: 178 FLEERPVTVRRNTAVVSKEEFEKELEKDGVVYRRHPVLPYAYELTNYDYLAGLLAFQKGY 237

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
           +++QD S+    +         V+D+CAAPGGK   L         V A D+++ ++  +
Sbjct: 238 FYIQDISSMQVAEWAEPKEGDYVIDVCAAPGGKAIHLAEKLSGTGYVEARDLTEYKVALI 297

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R  L   + +  DA        +  D ++ D PCS  G + + PD+      +  
Sbjct: 298 EENIERSGLDNIEAVCQDATINNEASYEKADILIADLPCSGLGILGKKPDLKSKMTVEMA 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
              A  QR++L    ++VKPGG +++S C+++++++E+     + + P   ++       
Sbjct: 358 KGLADLQRQILTVVHNYVKPGGKLLYSTCTINREENEDNTAWFVENFPEFEKIREK---- 413

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++ P             DGF+    R+
Sbjct: 414 ----------------QMLPGSDMG--------DGFYIAEFRK 432


>gi|307706106|ref|ZP_07642925.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK321]
 gi|307618506|gb|EFN97654.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           mitis SK321]
          Length = 437

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 204/457 (44%), Gaps = 38/457 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR +S  +L  V   +      L+     S    LS  D+ L   +V  T+   
Sbjct: 1   MTKVETARSLSLAVLEDVFINQAYSNIALNKHLKGSQ---LSVADKGLATELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--VRKKG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++ 
Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAQAIFESL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A +       L +          FA+G   +QD S+
Sbjct: 175 LVRNKASIRVTDLGRKEEIQVLLEASVSSLSPSGLVKEQGHFAGHDLFADGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFGQNSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VVQ  L S P   ++   +          
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEFEQVTLEHEC-------- 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    R++
Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435


>gi|324991975|gb|EGC23897.1| RNA methyltransferase Sun [Streptococcus sanguinis SK405]
          Length = 438

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 121/453 (26%), Positives = 191/453 (42%), Gaps = 38/453 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR     +L  V  +       L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQVLEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  ++     +    +  LL +S+ Q+LYLD +  +A V  AVE AK  K  R   K +N
Sbjct: 65  LSHLIE-DRDKLDNWIYILLMLSLYQMLYLDKIPQHATVHEAVEIAKIRK--RGSEKFIN 121

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR                +R +    +P W  + L   YG+ER LAI  +    S  
Sbjct: 122 ALLRRIEREGVSDFETIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T           L A         L +          F  G   +QD S+ +    
Sbjct: 182 SIRVTDMSRKADLRQLLGAENSLLSPSALVKKQGHFAGHQLFESGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD C+APGGKT  +   ++   +TALD+   +LE +  N +RL L      
Sbjct: 242 LDIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAERLGLADKITT 301

Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L  
Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +
Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G I ITP++ E         DGFF    R++ +
Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438


>gi|152994058|ref|YP_001338893.1| sun protein [Marinomonas sp. MWYL1]
 gi|150834982|gb|ABR68958.1| sun protein [Marinomonas sp. MWYL1]
          Length = 462

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 109/456 (23%), Positives = 211/456 (46%), Gaps = 39/456 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +++ ++ ++ SL+  L           ++     +++ +     R  PR++++
Sbjct: 23  ARQVAIKVITNILLQQGSLSTQLARH-----QLDVASEHAPMLKELCFGVCRQYPRLNSI 77

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +L      K   L  +L + + Q+ Y++  D+A V+  VE A R        KL+N+
Sbjct: 78  ALHLLAHPFEEKDTDLYAVLLLGLYQLTYMNTPDHAAVNETVE-ACRILNKDWATKLMNA 136

Query: 127 ILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE  ++++    + +    +P+W  +R    +  E +  I +A  +   + + V
Sbjct: 137 VLRRYQREADDIVEILEAQPSVEFNMPKWLVKRFNKHWP-EHLEEIIEASNTHPPMCIRV 195

Query: 183 K---FDIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDASASIP 233
                  ET+  +L  + + T      +          +  LPGF +G   VQD +A + 
Sbjct: 196 NESLVSRETYKEQLLDLGINTEKGEFSDSALYLKNAVRVGELPGFDDGYVSVQDEAAQLS 255

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSG-------AKVTALDVSKRRLEKLRCNLDRL 286
             +        VLD CAAPGGKT  L+           ++TA+++   R+EK+  NL+RL
Sbjct: 256 AHILSPKAGEKVLDACAAPGGKTGHLLEKANSAGLSSMELTAVELESWRMEKIESNLERL 315

Query: 287 HLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
              A        D   +   + FD +L+D PC++TG IRR+PD+   R   DI      Q
Sbjct: 316 GYSAQLICADASDLDAWWDGEHFDKILLDVPCTATGVIRRNPDIKINRKPADIDDLVIIQ 375

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R++L +  + +K GG ++++ CSL  +++E+ +Q  L +     E+   + A   +++  
Sbjct: 376 REILNKVWTTLKSGGFMLYATCSLMPEENEQQIQHFLANQEDAKEVALNSLAADLAVEWG 435

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + +S             ++   ++G DGF+   L++
Sbjct: 436 IPVS----------HGRQLFPQANGHDGFYYCLLQK 461


>gi|148997789|ref|ZP_01825353.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147756288|gb|EDK63330.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae
           SP11-BS70]
          Length = 438

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 123/451 (27%), Positives = 198/451 (43%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+     ++  
Sbjct: 8   ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     +   KLVN
Sbjct: 65  LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++    +  
Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     L A         L +          F  G   +QD S+ +    
Sbjct: 182 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFTNGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +      
Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q ++L  
Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +  GGI+ +S C++  +++ +VV+  L S P             K       +  +
Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436


>gi|15924207|ref|NP_371741.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926800|ref|NP_374333.1| hypothetical protein SA1060 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979538|ref|YP_001441797.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|13701017|dbj|BAB42312.1| SA1060 [Staphylococcus aureus subsp. aureus N315]
 gi|14246987|dbj|BAB57379.1| similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156721673|dbj|BAF78090.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|285816899|gb|ADC37386.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus 04-02981]
          Length = 461

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 30  NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 86

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 87  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 142

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 143 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 202

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 203 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 262

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 263 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 322

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 323 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 381

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 382 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 436

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 437 ----KTLQIMPQDF--------NSDGFFITKIKRK 459


>gi|221640599|ref|YP_002526861.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221161380|gb|ACM02360.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides KD131]
          Length = 410

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 137/434 (31%), Positives = 213/434 (49%), Gaps = 29/434 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  LL  V+ +   L+  L    G +A       ++   + + +  LR L   D +
Sbjct: 5   ARGMAVTLLDAVLGEGKLLSQALADLPGTAA-----PAERARAQRLASSVLRHLGPADRL 59

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   L  + P    +++ +LR++  ++     A + VV  AV+ A+R +  +H A LVN+
Sbjct: 60  LAPHLRKAPP---LTVRNILRLATVEMAADGAAPHGVVSSAVDLARRGRRTQHLAGLVNA 116

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           +LRR++      L        +P W ++ L   +G+  V AI     +P  +DLT +  +
Sbjct: 117 VLRRIAPASFAGLP----AQHLPMWLRQPLVRRWGRAVVTAIEAVQAAPPPLDLTARPGL 172

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                 L               P  + +LPG+  G WWVQDA+A++ V+L       SV 
Sbjct: 173 SAPGEPLPTGSFRL------RAPGQVSALPGYEAGEWWVQDAAAALAVKLLDPQPGESVA 226

Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           DLCAAPGGKT QL  +GA+VTALD+S+ RL +LR NL R  L AE +             
Sbjct: 227 DLCAAPGGKTLQLAAAGARVTALDISEARLGRLRENLARTGLQAEVV--AADLLTWQGGP 284

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           F+A+L+DAPCS+TGTIRRHPD+ + +D  ++      Q  +L   +  + PGG +VF  C
Sbjct: 285 FEAILLDAPCSATGTIRRHPDLPFVKDGSELPGLVALQAAMLDHALHLLAPGGRLVFCTC 344

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL +++ E  +  +L   P      P              +  EG +R+ PD+  +    
Sbjct: 345 SLLEEEGEAQLAALLGRHPELTVERPALPGVEPG-----WIGAEGGLRLRPDLWAEA--- 396

Query: 427 SSGMDGFFAVALRR 440
             GMDGFF   +RR
Sbjct: 397 -GGMDGFFMARVRR 409


>gi|146297084|ref|YP_001180855.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410660|gb|ABP67664.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 433

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 117/467 (25%), Positives = 199/467 (42%), Gaps = 65/467 (13%)

Query: 1   MKSGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK  +N R  +  ++  +  RK ++   L++  +           D+ L   +V+  LR+
Sbjct: 1   MK--INTRRAAFLVIFEIESRKNVNADALMEKYHHKLKKTE----DRALFVELVHGVLRY 54

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              +D  ++FV    +      +  +LR++  ++L+LD + DYA V+ A E AK   +N+
Sbjct: 55  KNILDYYINFVAKKGVK--DKKILNILRIATYELLFLDKIPDYATVNEACELAKNVNKNQ 112

Query: 119 HFAKLVNSILRRVSREKI------------ELLQRIAGISIIPEWFKERLENFYGKERVL 166
                VN+ILR + R K              +   ++     P++  + LE  YG ++ +
Sbjct: 113 --KDFVNAILRNIIRRKDEIEKALERVKEVNIKDFLSIKLSYPKFLIDYLEKSYGFDKTV 170

Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGF 218
            I +   +     + +         +  KL A              +  +  +I     +
Sbjct: 171 KILEFLNTKPLQSIKINTKKISQAEFLKKLEACGYEYKVPELNREIVYIVKGNIKESELY 230

Query: 219 AEGVWWVQDASASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRR 275
            +G ++ QD ++S  V+          S+LDLCAAPGGKT          V + DV+K +
Sbjct: 231 RDGYFYYQDLASSFIVKWNRDDFEKASSILDLCAAPGGKTFNCAEVTRGFVVSCDVNKSK 290

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +E+LR NL RL      + E DA          FD V+ D PCS  GTIR+ PD+ W + 
Sbjct: 291 IERLRENLLRLGFDNVVVAENDALTLNEDFVGKFDIVIADLPCSGFGTIRKKPDIKWNKT 350

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            +DI      Q K+L     ++K GGI+ +S C+L  +++E+ V K L        L+  
Sbjct: 351 KEDIENLHELQLKMLDNAAQYLKEGGIIFYSTCTLGHRENEDTVLKFLEKHK-DFSLISQ 409

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           N+                   I PD  +         DGFF   L++
Sbjct: 410 NT-------------------IFPDEYK--------CDGFFIAKLKK 429


>gi|303261834|ref|ZP_07347780.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292]
 gi|303263697|ref|ZP_07349619.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397]
 gi|302636917|gb|EFL67406.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292]
 gi|302646735|gb|EFL76960.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397]
          Length = 438

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 125/451 (27%), Positives = 200/451 (44%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+     ++  
Sbjct: 8   ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +SV Q+ YLD + D+AVV+ AVE AK     +   KLVN
Sbjct: 65  LSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++    +  
Sbjct: 122 AVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESLLVRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     L A         L +          FA+G   +QD S+ +    
Sbjct: 182 SIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +      
Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D     ++  +  FD +LVDAPCS  G +RR PD  + ++T D       Q ++L  
Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDTKYNKETADFASLQEIQLEILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +  GGI+ +S C++  +++ +VV+  L S P             K       +  +
Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436


>gi|313124092|ref|YP_004034351.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280655|gb|ADQ61374.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 438

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 200/458 (43%), Gaps = 44/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  NAR V+   L  V+ +       L+     +    L   +  L   +V  T+++ 
Sbjct: 1   MKT--NARTVALATLMKVINQGSYSNISLNHALKAAK---LPGEESRLATNLVYGTIQYQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L  ++ + L      ++ LL +S  QI +LD V + AV+D A + AK     + 
Sbjct: 56  LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKAYGRPKS 113

Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173
              +LVN IL  + R    L ++ A         +P W  +     +GK R   I  +  
Sbjct: 114 SGYRLVNGILHSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226
           S     I ++   D +     L+          L     ++          F +G   VQ
Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+  + F    N   LD C+APGGKT Q    +   +VTALD+ +++L  ++ N  
Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293

Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+ +     +  +DA     Y   + FD +L+DAPCS  G +RR P++ +T+  +DI   
Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L +    +K GG +V+S CS+  +++EE V+K L + P             K 
Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + A   +P+G ++I PD            DGFF    
Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434


>gi|282916466|ref|ZP_06324228.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus D139]
 gi|283770278|ref|ZP_06343170.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319906|gb|EFB50254.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus D139]
 gi|283460425|gb|EFC07515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           aureus subsp. aureus H19]
          Length = 435

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++   ++   D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNIM---DKALFTEIVYGTIKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++         +    + +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEQFQHPITGELV----- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 ++I P             DGFF   ++R 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433


>gi|257871148|ref|ZP_05650801.1| sun protein [Enterococcus gallinarum EG2]
 gi|257805312|gb|EEV34134.1| sun protein [Enterococcus gallinarum EG2]
          Length = 458

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 198/460 (43%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+   L  + R       LL           L+ +D  L+  +V  T+     +D  
Sbjct: 18  VRFVALEALVRIERGGAYSNLLLRELMNQGR---LNDKDGRLLTEMVYGTISRQLLLDYY 74

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   + ++  +    ++ LLR+S+ Q+LYLD V ++A+++ AVE AK  K N    K VN
Sbjct: 75  LANFIKNA-KKVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIAKA-KGNPGIGKFVN 132

Query: 126 SILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177
            +LR + R       +  + L+R+A    +P W  ER     G ++   +  + + P + 
Sbjct: 133 GVLRTIQREGVPALDQIKDPLERLAIEISMPLWLTERFVAQIGSDKTRELGLSLLVPSHA 192

Query: 178 ---IDLTVKFDIETWA----HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +DL      E         + A         +      +     + +G+  +QD S+
Sbjct: 193 SGRLDLQRITRNEAILQLQEEGIEARESQLSPYGIVADKGFLAGSSLYHDGLLTIQDESS 252

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDR 285
            +            VLD CAAPGGKT  +        G KVTALD+   +++ +  N +R
Sbjct: 253 MLVAPALHIAPEHQVLDACAAPGGKTTHIASFLSAEAGGKVTALDIHPHKVKLITENAER 312

Query: 286 LHLY----AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +     AE +   +   +  ++ FD +LVDAPCS  G +RR PD+ + +   D+ +  
Sbjct: 313 LAVSEVVQAEVMDAREVAQHFEEQQFDRILVDAPCSGLGLMRRKPDIKYNKQAADLERLP 372

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L      +K  GI+++S C++  ++++ VV+  L   P   E + ++     + 
Sbjct: 373 EIQLAILESAAPTLKNSGIMIYSTCTIMLEENQAVVEAFLADHP-EFERIDVSVNADIAA 431

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++      +  + I P             DGFF   LR+ 
Sbjct: 432 NIN-----DQMLTIYPQDFM--------TDGFFISCLRKK 458


>gi|227503566|ref|ZP_03933615.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           accolens ATCC 49725]
 gi|227075602|gb|EEI13565.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           accolens ATCC 49725]
          Length = 484

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 100/454 (22%), Positives = 159/454 (35%), Gaps = 37/454 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  ++  V  +      +L         + L+ RD      I   TLR L  +DA
Sbjct: 43  PARAVAFDVVRRVSEEDAFANLVLPKALRK---QKLTGRDAAFATEITYGTLRTLGVLDA 99

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L      +   LR+   Q+LY  V  +A VD +V                N
Sbjct: 100 VIAQCSSRELEAISPVVIDALRLGTYQVLYTRVEPHAAVDTSVRLVVA-GGEEKAKGFAN 158

Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
            ILR ++R       +           A     P W  E        E + A+  A    
Sbjct: 159 GILRTITRTPPNEWLKRLAPEGEIAGLAFRHAHPTWIAESFARVVDPEELPAVLAADSER 218

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         L    +G+  VQD  + +
Sbjct: 219 PSVHLVARPGEISAEELALITGNEEGTYSPYAVYMDSGDPGQLEPVQQGMAAVQDEGSQL 278

Query: 233 PVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286
             +    +          LDLCA PGGK A +       +A  D  +    + +     +
Sbjct: 279 IARAVCEVPVSGTDQGRWLDLCAGPGGKAALMGALARIESAHVDAVEVSPHRAKLIEKTV 338

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +   D  +      FD +LVDAPCS  G +RR P+  W +   DI + +  Q +
Sbjct: 339 QGLPVTVHVADGRNPQVGSGFDRILVDAPCSGLGALRRRPEARWRKSEADIAELSTLQFE 398

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   +  V+PGG+VV+S CS D +++ ++V + +        L        + I     
Sbjct: 399 LLSSALKLVRPGGVVVYSTCSPDLRETRDIVDQAVEK------LGAQELDAREFIPDMGN 452

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  E  +++ P           G D  F   LRR
Sbjct: 453 VGKEKSVQMWPH--------RHGTDAMFMAVLRR 478


>gi|306836175|ref|ZP_07469159.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
 gi|304567896|gb|EFM43477.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
          Length = 484

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 102/454 (22%), Positives = 158/454 (34%), Gaps = 37/454 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  ++  V  +      +L         + LS RD      I   TLR L  +DA
Sbjct: 43  PARAVAFDVVRRVSEEDAFANLVLPKALRK---QKLSGRDAAFATEITYGTLRTLGVLDA 99

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L      +   LR+   Q+LY  V  +A VD +V                N
Sbjct: 100 VIAQCSSRELEAISPVVIDALRLGTYQVLYTRVEPHAAVDTSVRLVVA-GGEEKAKGFAN 158

Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
            ILR ++R       +           A     P W  E        E + A   A    
Sbjct: 159 GILRTITRTPPNEWLKRLAPEGEVAGLAFRHAHPTWIAESFARVVDPEELPAALAADSER 218

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         L    +G+  VQD  + +
Sbjct: 219 PSVHLVARPGEISAEELALITGNEEGTYSPYAVYMDSGDPGQLEPVQQGMAAVQDEGSQL 278

Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286
             +    +          LDLCA PGGK A +       +A  D  +    + +     +
Sbjct: 279 IARAVCEVPVNGTDQGRWLDLCAGPGGKAALIGALARIESAHVDAVEVSPHRAKLIEKTV 338

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +   D  +      FD +LVDAPCS  G +RR P+  W +  DDI + +  Q +
Sbjct: 339 QGLPVTVHVADGRNPQVGSGFDRILVDAPCSGLGALRRRPEARWRKSEDDIAELSTLQFE 398

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   +  V+PGG+VV+S CS D +++ ++V + +        L          I     
Sbjct: 399 LLSSALKLVRPGGVVVYSTCSPDLRETRDIVDQAVEK------LGAQELDARDFIPDMGN 452

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  E  +++ P           G D  F   LRR
Sbjct: 453 VGKEKSVQMWPH--------RHGTDAMFMAVLRR 478


>gi|332364575|gb|EGJ42344.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1059]
          Length = 438

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 190/453 (41%), Gaps = 38/453 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR     +L  V  +       L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQVLEILEEVFEEGAYSNIALNRALNQSL---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  ++     +    L  LL +S+ Q+LYLD +  +A V  AVE AK  K  R   K VN
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAVEIAKIRK--RGSEKFVN 121

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR                +R +    +P W  + L   +G+ER LAI  +    S  
Sbjct: 122 ALLRRIEREGVSDFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T           L A         L +          F  G   +QD S+ +    
Sbjct: 182 SIRVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFERGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD C+APGGKT  +   ++   +TALD+   +LE +  N  RL L      
Sbjct: 242 LAIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAKRLGLADKITT 301

Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L  
Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +
Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G I ITP++ E         DGFF    R++ +
Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438


>gi|309803103|ref|ZP_07697200.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LactinV 11V1-d]
 gi|315653701|ref|ZP_07906621.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
 gi|308164611|gb|EFO66861.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LactinV 11V1-d]
 gi|315489063|gb|EFU78705.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
          Length = 437

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 207/460 (45%), Gaps = 45/460 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVQTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  E+ + ++ ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKTKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL      +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ +++L  ++  L+
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLN 293

Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           RLH   + I++        +Y   + FD +LVDAPCS  G IRR P+V + +  +D+   
Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFDQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           +  Q  +L      +   G +V+S C++  +++E+VV++ L + P    L P        
Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 LS    I+I PD            DGFF     +
Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435


>gi|15675503|ref|NP_269677.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|13622700|gb|AAK34398.1| putative RNA-binding Sun protein [Streptococcus pyogenes M1 GAS]
          Length = 440

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 110/451 (24%), Positives = 203/451 (45%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  
Sbjct: 9   TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  LL +S+ Q+ YLD    +A+V+ AV  AK     +   K VN
Sbjct: 66  LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124

Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           +ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S  
Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    +E  A  L+A         L +      +   F  G   +QD S+ +    
Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    + 
Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++         Q ++L  
Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQGFNALQAIQLEILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +
Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G++ ITP+  +         DGFF   +RR+
Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|259501638|ref|ZP_05744540.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
 gi|302191155|ref|ZP_07267409.1| SUN protein [Lactobacillus iners AB-1]
 gi|312874589|ref|ZP_07734613.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2053A-b]
 gi|325911750|ref|ZP_08174157.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners UPII 143-D]
 gi|259166923|gb|EEW51418.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
 gi|311089819|gb|EFQ48239.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners LEAF 2053A-b]
 gi|325476516|gb|EGC79675.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners UPII 143-D]
          Length = 437

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVQTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  E+ + ++ ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKTKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL      +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ +++L  ++  L 
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293

Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           RLH   + I++        +Y   + FD +LVDAPCS  G IRR P+V + +  +D+   
Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           +  Q  +L      +   G +V+S C++  +++E+VV++ L + P    L P        
Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 LS    I+I PD            DGFF     +
Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435


>gi|195978660|ref|YP_002123904.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975365|gb|ACG62891.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 442

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 197/451 (43%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  ++  +          L  +  +   + LS +D+ LV  IV  T+     ++  
Sbjct: 11  ARGQALLIVEDIFDHGAYSNLALKHQLAN---QSLSDKDKALVTEIVYGTISRKITLEWY 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     R    +  LL +S+ Q+ YLD V  +A+V+ AV  AK     R   KLVN
Sbjct: 68  LAHYIE-DRDRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVN 126

Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+++ +            +  A    +P W  ++L + +G+ER +AI ++    S  
Sbjct: 127 AVLRQLTNKPLPDIKSIKRKNKYYAVAYSVPVWLVKKLIDQFGEERAVAIMESLFVRSRA 186

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    ++       +         L +   +  +   F  G   +QD ++ +    
Sbjct: 187 SIRVTDLTKLDEIKQATGSEQSLLARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPT 246

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---- 290
                   +LD C+APGGKTA +   ++  KV ALD+ + +L  +  N  RL +      
Sbjct: 247 LDIQGQEMILDACSAPGGKTAHIASYLTSGKVVALDLYEHKLALVNENAKRLGVADRTET 306

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           + +   +   +  K  FD +LVDAPCS  G IRR PD+ + ++  D  +    Q ++L  
Sbjct: 307 KVLDAREVHKHFAKNSFDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSS 366

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V+ K L+  P        N            +  +
Sbjct: 367 VCQTLRKGGIITYSTCTIFDEENFQVIDKFLQRHP--------NFEQVTLKHAQADIVKD 418

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G + ITP+  +         DGFF   +RR+
Sbjct: 419 GCLMITPEQYQ--------TDGFFIGQVRRV 441


>gi|150016032|ref|YP_001308286.1| sun protein [Clostridium beijerinckii NCIMB 8052]
 gi|149902497|gb|ABR33330.1| sun protein [Clostridium beijerinckii NCIMB 8052]
          Length = 439

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 194/457 (42%), Gaps = 41/457 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++  +L  V+ +      +L  E  +     LS +D+ L+  IV   LR    +D
Sbjct: 1   MNCRKLAVKILGRVLNEGAYSNIVLAKELNE---AELSDKDKALLTEIVYGVLRRKKTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++   +   L      +  +LRV++ Q+ +LD +  YA  + AVE+AK   EN   +KL
Sbjct: 58  IIISNFV-KDLKLMNKDILNILRVAIYQMNFLDKIPSYAACNEAVEEAKEISEND--SKL 114

Query: 124 VNSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR  ++           +   A       W    L   YG+     I     S   
Sbjct: 115 VNGILRNFTKNPDDIEVVGNKIDEYAYKFSFEPWMIRLLIKQYGENVSKKIMSGLNSIPQ 174

Query: 178 IDLTVKFDIETWAH---------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + + V      +                 +        +  +SI + P F EG   VQD 
Sbjct: 175 VSVRVNELKADYDEVFEKLEELEYEVEEGVICPEAICIKGGKSIENNPLFQEGKITVQDE 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA I   L      ++V DLC+APGGKT     ++ +  KV A D+ + +L  ++ N +R
Sbjct: 235 SAMIIAPLLELEEGMTVTDLCSAPGGKTTHIAEMLQNTGKVLAYDLHESKLGLIKENCER 294

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L +   ++   DA    P      D +L+D PCS  G IR+ P++ W +  +++ +    
Sbjct: 295 LGITNVEVNTSDATKLNPDLIASSDRILIDVPCSGLGIIRKKPEIKWNKTRNELREIIKV 354

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR ++     ++K  GI+++S C+L+K+++EE ++  +                +     
Sbjct: 355 QRDIMECAWMYLKEDGIMIYSTCTLNKEENEENIEWFVSRHKDCSV-----KKIFIGKQD 409

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  + +G + I P+           MDGFF   L +
Sbjct: 410 NLVYNRDGSLTIMPN---------ENMDGFFVTKLEK 437


>gi|89056531|ref|YP_511982.1| Fmu (Sun) [Jannaschia sp. CCS1]
 gi|88866080|gb|ABD56957.1| Fmu (Sun) [Jannaschia sp. CCS1]
          Length = 410

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 140/436 (32%), Positives = 214/436 (49%), Gaps = 27/436 (6%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR  +  LL+ V+R+R  L  +             +  +      +    LR L  +D
Sbjct: 1   MKARPAALILLNAVLRERQILGQV---------DVPATGAEAARANRLALSVLRNLDAVD 51

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           AV+           +  +  LLR+   ++L      + VV   V  AK     R  + +V
Sbjct: 52  AVIKPYTTRKP---QIGVHNLLRLGAVELLVNGEDAHGVVSDIVGIAKTQPHTRKASGMV 108

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           N+ILR+++ E        A    +P W  + L    G + + AI  A      +DL    
Sbjct: 109 NAILRKIAVEG-AEAFAKAPPQRLPPWIDKALRKRIGADGIRAIEQAQAQVPPMDL---T 164

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             +      NA +LPTG +RL   P+ + +LPG+++G +WVQDA+A++PV+L G +   S
Sbjct: 165 PRDDGFMLENAEVLPTGSLRLNNHPQ-VSALPGYSDGAFWVQDAAAALPVKLLGDVRGKS 223

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           VLDLCAAPGGKT QL  +GA+VTALD+S  RL ++  NL R  L A  + E         
Sbjct: 224 VLDLCAAPGGKTMQLAAAGAEVTALDISGPRLRRVEENLARTGLSATLVTEDAFQHSGS- 282

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             +DA+L+DAPCS+TGTIRRHPD+ + +D  ++      Q +L+   ++ +KPGG +V+ 
Sbjct: 283 --YDAILLDAPCSATGTIRRHPDLPFVKDGREVEPLTRLQMQLIDHALTLLKPGGTLVYC 340

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CSL   + E  ++  L+       L  + +        A   S EG +R+ P    +  
Sbjct: 341 TCSLLPVEGEFQIKAALKRHDG---LSIIPADPVALGGDAEWASAEGGLRLWPFYWAE-- 395

Query: 425 GVSSGMDGFFAVALRR 440
               GMDGF+  AL R
Sbjct: 396 --RGGMDGFYMAALTR 409


>gi|312869942|ref|ZP_07730081.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
           PB013-T2-3]
 gi|311094527|gb|EFQ52832.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
           PB013-T2-3]
          Length = 449

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 189/466 (40%), Gaps = 44/466 (9%)

Query: 1   MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M    M AR V+   L  + R+       L+          L+  D+ L   IV  TL+ 
Sbjct: 2   MTKQDMTAREVALTALDRIRRQGAYSNLQLNQLLSKHH---LNDSDRRLATRIVYGTLQH 58

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN- 117
              ++  L   +     R    ++ LL  ++ Q  YL  V D+AV D  +E AK      
Sbjct: 59  QLTLEYWLQPFVKG--KRLDSWVETLLLTALYQYHYLERVPDWAVTDETIEIAKHWGNPG 116

Query: 118 --RHFAKLVNSILRRVSREKIELLQRI---AGISIIPEWFKERLENFYGKERVLAISDAC 172
             +    +++++LRR   +  ++       A    IP W    L   YG+ +   I  A 
Sbjct: 117 IRKFVTGVLHAVLRRGFPDFDQVQDPEERLAVQYSIPRWLVHELGAQYGRAQAAQILKAV 176

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
             P  + + V     D+ T    L+A  +           L      I+  P FA G   
Sbjct: 177 NDPARLVVRVNTAVTDLATVKAGLHAAGIEYQESRVVPNALVITKGEILDSPLFATGQIT 236

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKL 279
           VQD SA + V          VLD CAAPGGKT Q        +G +V ALD+ + +   +
Sbjct: 237 VQDESAMLAVDSMAVQPGDRVLDACAAPGGKTVQIAERLDPTAGGRVDALDIHQHKARLI 296

Query: 280 RCNLDRLHLYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           + N  R+ +        +DA     +     FD +LVDAPCS  G +RR P++ +T+   
Sbjct: 297 QKNARRMQVDDRVVAHTLDARRVDEEFADESFDKILVDAPCSGIGLLRRKPEIRYTKKLA 356

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D       Q  +L      VK GGI+ +S C++ +Q++E+ VQ+ L +      L    S
Sbjct: 357 DSQNLHQIQGSILNAVAPKVKKGGIITYSTCTILQQENEQTVQEFLAAHSDFRLLTTKTS 416

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              K       L+      I P           G DGFF  +L+R+
Sbjct: 417 RNLKDDRALATLT------ILPSDY--------GSDGFFISSLQRI 448


>gi|116073315|ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           RS9916]
 gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           RS9916]
          Length = 456

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 113/464 (24%), Positives = 189/464 (40%), Gaps = 61/464 (13%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R ++  +L  V          L+        + LS  D+ LV  +    +R    +
Sbjct: 22  GVLPRRLAWEVLEAV-AAGAYADVALERALR---GQQLSGPDRGLVTELAYGAIRQRRWL 77

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
           D  LD +      ++   L+ LL V + Q+L +  +   A V+ +VE AKR   NR  A 
Sbjct: 78  DGWLDRLGKVPARKQPPRLRWLLHVGLYQLLCMERIPAAAAVNTSVELAKRHGLNR-LAP 136

Query: 123 LVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +VN +LR                +   R+A    +P+WF ++L+ + G E+   ++ AC 
Sbjct: 137 VVNGLLRGALRAQEAGEQLTLPDDPALRLALQQSLPDWFCQQLQQWCGPEQAERVAQACN 196

Query: 174 SPLYIDLTVKFDI----------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
               +DL V              E     + A+     G+++      +   PG+ +G W
Sbjct: 197 QVPSLDLRVNRLRSTPEAVKAALEDAGLTVVAIPECPDGLQVLSHGGDLRQWPGYDDGHW 256

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD +A     L        VLD CAAPGGK   L   +    +V A+D S  RL+++ 
Sbjct: 257 CVQDRAAQWVAPLLAPQPGDRVLDACAAPGGKATHLAELMGDQGEVWAIDRSAGRLQRVA 316

Query: 281 CNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            N  RL       +  DA D        K  F  +L+DAPCS  GT+ RH D  W     
Sbjct: 317 ANAARLGTNCLQAMAADAADLLTLKPEWKGSFQRILLDAPCSGLGTLARHADARWRVSAK 376

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            + +    Q +LL   +  + PGG +V++ C++   ++ E ++  L++ P          
Sbjct: 377 SVAELVPLQARLLEGMLPLLSPGGSLVYATCTIHPAENTERIEAFLQAHP---------- 426

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                             +++    E+      G DGF+A  ++
Sbjct: 427 ------------------QLSLQHQEQRWPDPEGGDGFYAAVIK 452


>gi|56459128|ref|YP_154409.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
 gi|56178138|gb|AAV80860.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
          Length = 442

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 118/446 (26%), Positives = 194/446 (43%), Gaps = 47/446 (10%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           +  V+ K  SL+  L    G      LS  D+ L  AI    LR LP ++ ++   L   
Sbjct: 24  IFHVLEKGESLSAALPHATGK-----LSDADKRLASAISYGVLRVLPSLNKLVGAKLDKP 78

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR---- 130
           L  K   L  LL V   Q+  L + D+A V   VE A R    R+   LVN ILR+    
Sbjct: 79  LKGKLKVLHYLLLVGAYQLYCLRIKDHAAVSATVEAA-RILGKRNHKGLVNGILRQLLRE 137

Query: 131 --VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYIDLTV-KFDI 186
              + E  +    +  +   P W  E ++  + ++    + +     P+++ +    F+ 
Sbjct: 138 APATDESQQRELPVDAMQNHPRWLFEAIQADHPQQASDILIENNAHPPMWLRVNRRFFNR 197

Query: 187 ETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           + +  +L    +   G  L         P  +  LPGF  G   VQD SA +        
Sbjct: 198 DDYLRQLEDSGIAAEGDTLAGDAIRLHSPVPVERLPGFDRGHASVQDRSAQLAADYLNVK 257

Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
            +  VLD CAAPGGK             V A+D+  +RLE++  NL+R  L A       
Sbjct: 258 ASHRVLDCCAAPGGKLLHLLERNDFEQPVQAIDIDAKRLERVDENLERAGLSAVVHCADV 317

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            +  D+   + FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q ++L      +
Sbjct: 318 AETEDWWDGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDINELAQLQSQILNSLWPLL 377

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG ++++ CS+  ++++  ++  L+       L+P++               +  +++
Sbjct: 378 KNGGELLYATCSILSKENQTQIESFLKQ-QSSASLIPIDE-------------KQKTLQL 423

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P             DGFF   L+++
Sbjct: 424 LPG--------ERNGDGFFYARLKKV 441


>gi|78189086|ref|YP_379424.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
           chlorochromatii CaD3]
 gi|78171285|gb|ABB28381.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
           chlorochromatii CaD3]
          Length = 429

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 181/460 (39%), Gaps = 52/460 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR V+  +L  + +       LL      S    L + ++ L   +VN  LR+ 
Sbjct: 1   MST---AREVALQVLQALEKSSERSDALLHKHLEAS---GLERVERALATELVNGVLRWQ 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
            ++D+ +       L      L+ +LR+   Q+L+L  +  +A V+  V+ A++ K  R 
Sbjct: 55  LQLDSRISLAYHHKLEAAAPVLRNILRLGAYQLLFLTKIPRWAAVNECVKLARKYKGER- 113

Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170
            AKLVN +LR +        +         ++A     P W  ER    YG+ +   +  
Sbjct: 114 MAKLVNGVLRHLDGGNEAFEKLLQGRSQAEQLALQFSHPAWLIERWLATYGELKTRQLLH 173

Query: 171 ACISPLYIDLTVKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
                  +   +           +     A M P          E  +      EGV  V
Sbjct: 174 YNNQAPMMGFRINRLKADAKDFFDNPTFAAAMEPCELPYCFLSREFSLFETALQEGVLSV 233

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+ + ++   L        V+DLCAAPGGK   +   + +  +V A+D  +++L KL  +
Sbjct: 234 QNPTQALAPLLLNPAPQSVVIDLCAAPGGKAMFMAELMHNQGEVIAVDQYEQKLRKLESH 293

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
              L L     +  DA    P    DAVL+DAPCS TG I R  ++ W      + +   
Sbjct: 294 AQALGLTIIRTVAGDARSVAPNLQADAVLLDAPCSGTGVIGRRAELRWKVTPAMVAELQG 353

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL    + +KP G +V++ CS++ +++ E V   L+  P  V              
Sbjct: 354 LQAELLDHAATLLKPQGRLVYATCSIEPEENGEQVAAFLQRHPNFVAE------------ 401

Query: 403 MAMALSPEGWIRITPD-MLEKIDGVSSGMDGFFAVALRRL 441
                         P      + G   G DG F   LR+L
Sbjct: 402 --------------PHAQHMTLPGDRYGYDGGFCQCLRKL 427


>gi|315222002|ref|ZP_07863913.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           anginosus F0211]
 gi|315188968|gb|EFU22672.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           anginosus F0211]
          Length = 440

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 192/449 (42%), Gaps = 34/449 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +       L+    +     LS  D+ LV  IV  T+     ++  
Sbjct: 11  ARQTALAVLEAVFSEGAYSNIALNQALLEVP---LSSADKGLVTEIVYGTVARKITLEWY 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124
           L  V+     +    L  LL +S+ QILYLD +  +AVV+ AVE AK R K +  FA  V
Sbjct: 68  LSHVIE-DRDKLDSWLYFLLLMSLYQILYLDKIPAHAVVNEAVELAKVRKKGSEKFANAV 126

Query: 125 NSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178
              L R             +R +    +P W  + L   YG++R LAI ++    +   +
Sbjct: 127 LRGLLRDGVADIGSIKRKNKRYSIQYSLPVWLVKVLIEEYGEKRALAIFESLFLRNKASV 186

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +      E     L A         L +          F EG   +QD S+ +      
Sbjct: 187 RVGDLSRKEELKQVLQAEDSLLAPSALVKNHGHFAGHALFEEGAITIQDESSQLVAPSLE 246

Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295
              +  VLD C+APGGKT  +   ++  +VTALD+ + +L  ++ N  RL +       +
Sbjct: 247 LRGDEKVLDACSAPGGKTMHIASYLTTGQVTALDLYEHKLALIKENAQRLGVADKVITKK 306

Query: 296 MDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q ++L    
Sbjct: 307 LDARKVFETFGADAFDKILVDAPCSGIGLIRRKPDIKYNKENADFASLQKIQLEILDSVC 366

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             ++ GGI+ +S C++  Q++ +VV++ L + P             K       +  +G 
Sbjct: 367 QSLRKGGIITYSTCTIVSQENFQVVEQFLTAHPDF--------KQVKLEHNRQDILKDGC 418

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           I ITP++         G DGFF    +R+
Sbjct: 419 ILITPELY--------GSDGFFISQFKRI 439


>gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 438

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 189/465 (40%), Gaps = 60/465 (12%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ +RL +  +L  V  +       +D  +       LS  D+ L   +    +R   
Sbjct: 3   KKGLLSRLAAWEILQTV-GRGAYSDIAIDHSFRKY---SLSIADRALATELACGAIRQRL 58

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D  +D +   S  ++   L+ LL V + QI Y+D +   A V+  VE AK+    +  
Sbjct: 59  VLDCWIDCLAKVSAEKQPPLLRWLLHVGLYQIFYMDRIPVSAAVNTTVELAKKKNL-KSL 117

Query: 121 AKLVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           A +VN+ILR         +     IE   R++    IP W    L  + G++    I+ A
Sbjct: 118 APVVNAILREAIRARDLGKELPGLIEPQDRLSLKHSIPTWLAYELIEWKGEKGAEIIAKA 177

Query: 172 CISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
                 IDL V     +             +   +     G+ +      +   PG+ +G
Sbjct: 178 FNQAPAIDLRVNSKRSSVKSLRQKFQDSGIESKLIETCPYGLTVTSGAGDLRQWPGYEQG 237

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            W VQD SA   V L    +   VLD C+APGGKT  L   +    ++ A+D S +RL+K
Sbjct: 238 EWSVQDRSAQWVVPLLEPRSGEVVLDACSAPGGKTTHLAELMNDIGEIWAVDRSPKRLQK 297

Query: 279 LRCNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  N  RL  +    +  DA +        K  F+ +L+D PCS  GT+ R+PD  W   
Sbjct: 298 VSLNAARLGHHCIKFLSADATNLIELKPSWKGYFNKILLDVPCSGLGTLARNPDARWRMS 357

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
              I      Q  LL   +  +KPGG +V+S C++   ++   ++K +            
Sbjct: 358 PSQIEGLIQLQFNLLEGILPLLKPGGRIVYSTCTIHPDENFRQIEKFVSMH--------- 408

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                        L+ E   +I P         + G DGF+A  +
Sbjct: 409 -----------QPLNLERQKQIWPGD-------AQGGDGFYAAII 435


>gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 435

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 194/460 (42%), Gaps = 47/460 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R  +   +  V+         ++     +    +S  D+ L   +V  T++  
Sbjct: 2   MNT---VRGYAFDTIQQVLNDGAYSNLKINEVLSSN---EISTVDRNLYTELVYGTIKRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + + +      ++QLL +S+ Q +YLD V D+A+++ AV+ AK  +   H
Sbjct: 56  YTLDYILKPFVKTKIKG---WMRQLLWMSIYQYVYLDKVPDHAIINEAVDIAK-HRGGYH 111

Query: 120 FAKLVNSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN ILR + R ++           RIA    IP+W  +     +G E   AI+ + 
Sbjct: 112 NGNVVNGILRSIMRSELPQFDEIKDDKKRIAIKYSIPKWIVDHWVTHHGIETTEAIAQSF 171

Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
           + P+   + V       ++   +L                L    + I++   F +G   
Sbjct: 172 LEPVKTTVRVNISRGSVDSIVAELEKEGFKVEKDEILPFCLHITGQPIINSRAFKDGYVS 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           VQD S+ +   +     N  VLD C+APGGK   +         V A D+   +++ +  
Sbjct: 232 VQDKSSMMVAHIMNLGRNDVVLDACSAPGGKACHMAEILSPEGHVDATDIHTHKIDLINF 291

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N+ +L L      + DA +    + +D +LVDAPCS  G +R  P++ +T+  + I    
Sbjct: 292 NIKKLKLDNISAFQHDATE-PYTRTYDKILVDAPCSGLGVLRHKPEIKYTQSKESIQSLV 350

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      +KPGG +V+S C++++ ++E V+   L+ +    E  P         
Sbjct: 351 ELQLQILENIKRNIKPGGTIVYSTCTIEQMENENVIYTFLKQN-EEFEFEPFQHPVTGK- 408

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      ++I P   +         DGFF   +RR 
Sbjct: 409 -------EVNTLQILPQDFDS--------DGFFITQIRRK 433


>gi|114769580|ref|ZP_01447190.1| ribosomal RNA small subunit methyltransferase B, putative [alpha
           proteobacterium HTCC2255]
 gi|114549285|gb|EAU52167.1| ribosomal RNA small subunit methyltransferase B, putative [alpha
           proteobacterium HTCC2255]
 gi|297183946|gb|ADI20067.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L11F12]
          Length = 430

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 150/438 (34%), Positives = 237/438 (54%), Gaps = 15/438 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR  +  LL  V+ +R  L  +++    DS    L   ++   +++   TLR L 
Sbjct: 3   KPGLFAREAAVRLLHAVLLERRLLIDIVN--GEDSLLIDLEPSERARAQSLAMTTLRNLG 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            ID VL   L     +  ++L  +LRVS A++L   +A +A VD AV  AKR  +  H  
Sbjct: 61  PIDFVLQKYLTK---QTPFALLNILRVSAAEMLVDGIAAHAAVDSAVTMAKRRHKTAHLK 117

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            L N++LR+V+ E +++ + +     +P+ F+ ++     KE + +I  +  +   +DL+
Sbjct: 118 DLANAVLRKVASEGMDIFEGLEPQ-ELPKAFRSQMAKIVTKEEMTSIERSHQAGAPVDLS 176

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
            K   +  A   N+  +      ++ +    I  + GF +G WWVQD +ASIP + FG L
Sbjct: 177 FKDIKKANAFIENSNGIMMPNGSVRLKRAGQITEMNGFLDGDWWVQDLAASIPAKCFGDL 236

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +   VLDLCAAPGGKT QL   GA VTALD+S +RLE+++ NL+R  L A  I   DA  
Sbjct: 237 SGKKVLDLCAAPGGKTMQLASMGATVTALDISSKRLERVKQNLERTKLKANCI-AADALK 295

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P + FDA+L+DAPCS++GTIRRHPD+ + ++  D+ +    QR LLL+  +++ PGGI
Sbjct: 296 WKPVERFDAILLDAPCSASGTIRRHPDLPFAKENFDLGELLKLQRALLLKASNWLVPGGI 355

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++S CS+   + E  VQ + + +     L+P               + +G IR+ PD  
Sbjct: 356 LIYSTCSIFSAEGEGQVQWLAKQNND---LIPQKIDPKLIGLSDYMANKDGQIRLRPDFF 412

Query: 421 EKIDGVSSGMDGFFAVAL 438
             +     GMDGFF    
Sbjct: 413 ADL----GGMDGFFVAKF 426


>gi|227549211|ref|ZP_03979260.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078665|gb|EEI16628.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 480

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 168/460 (36%), Gaps = 40/460 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G +AR  +  ++  V         +L     +   R ++ RD      +   TLR    +
Sbjct: 39  GDSAREAAFEVVHRVATDDAYANLVLPNLLRE---RSITGRDAAFATELAYGTLRAQGVL 95

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           DAV+       L      +   LR+   Q+LY+ V D+A VD +V   +     +     
Sbjct: 96  DAVIARCSSRELGDIAPEVLAALRLGAYQLLYMRVDDHAAVDTSVRLVEAAGAGK-AKGF 154

Query: 124 VNSILRRVSREKIELLQRI----------AGISIIPEWFKE----RLENFYGKERVLAIS 169
            N+ILR +SR   +               A  +  PEW        L     +  + A  
Sbjct: 155 ANAILRTISRTPAQQWLDELTPNDPLAAVAFRTSHPEWIARSFATALGESGAEGELEAAL 214

Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            A      + L  +         A              +        +L    +G+  VQ
Sbjct: 215 AADSQRPVVHLVARPGEISAAELAAITGGDEGAYSPYAVYLHEGDPGALEPVRDGLAGVQ 274

Query: 227 DASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRC 281
           D  + +  +    +    +    LDLCA PGGK A L   +G +   +D  +    +   
Sbjct: 275 DEGSQLIARALAEVDVADDAGRWLDLCAGPGGKAALLGSLAGIEGAHVDAVEISEHRAEL 334

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
               +      +   D  D   +  +D VLVDAPCS  G +RR P+  W +   +I    
Sbjct: 335 IRKIVGGLPVSVTVADGRDPGLQPGYDRVLVDAPCSGLGALRRRPEARWKKQESEIGALT 394

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL   ++ VKPGG+VV+S CS D +++  VV  VL       E +  ++      
Sbjct: 395 RLQSELLESALTLVKPGGVVVYSTCSPDVRETRGVVDAVLAE--GGAEELDASTWLPPME 452

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +   A S    +++ P           G D  F   LR+ 
Sbjct: 453 NTGEAKS----VQMWPH--------RHGTDAMFFAVLRKK 480


>gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
           27560]
 gi|149734026|gb|EDM50145.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
           27560]
          Length = 448

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 181/457 (39%), Gaps = 40/457 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +N R +   +L  V  K       L      +    L +  +  +  +   TL     ID
Sbjct: 10  VNLRNIVLEMLLQV-NKGEKSHVALKSTLDKNV--SLDKHQRSFITRLFQGTLERRIEID 66

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++    + + + K  ++++LR+ V QI Y+D V   AV +  V+ A++ ++ R+    
Sbjct: 67  FIINQFSKTPVNKMKPVIREILRMGVYQIKYMDNVPVSAVCNEGVKLAEK-RKFRNLKGF 125

Query: 124 VNSILRRVSREKIELLQRIAGI------SIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN +LR ++R   ++               +P+W  E+    YG  +   + +    P  
Sbjct: 126 VNGVLRNIARNIEKIEYPKEQKERLSVIYSVPKWIIEKWTKEYGISKTEEMLEGLYKPKA 185

Query: 178 IDLTVKFDIETWAHKLNAVMLP---------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             +       T    + ++                      + + +L  F  G+  VQD 
Sbjct: 186 TSVRCNTSRATVEEIVKSLEYQGTTVEKSKLYDKALKISGYDKLENLDVFKAGMITVQDE 245

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +            ++D+CAAPGGK+  +         V A D+++ ++  +  N+ R
Sbjct: 246 SSMMVGIAANPKEKDYIIDVCAAPGGKSLHVSELLNGTGTVEARDLTEYKIGLIEENVAR 305

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +          DA     +  +  D V+ D PCS  G I    D+ +    + I +    
Sbjct: 306 VGNENIITKVSDATVLDKEAIEKADIVIADLPCSGLGVIGNKSDIKYNVTQNQIDELVEL 365

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QRK+L Q   +VK GG +++S C++++Q+++  V+ +  +       +P        I  
Sbjct: 366 QRKILKQVSKYVKQGGKLLYSTCTVNRQENDSNVKWIQDN-------LPFKLQSLNGIVP 418

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +G ++I P           GMDGFF     R
Sbjct: 419 EQLKCEKGCLQIYPGQY--------GMDGFFVSLFIR 447


>gi|191638611|ref|YP_001987777.1| RRNA methylase (Putative) [Lactobacillus casei BL23]
 gi|190712913|emb|CAQ66919.1| RRNA methylase (Putative) [Lactobacillus casei BL23]
 gi|327382653|gb|AEA54129.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
           casei LC2W]
 gi|327385847|gb|AEA57321.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
           casei BD-II]
          Length = 446

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 187/465 (40%), Gaps = 46/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N RL++   LS V  +       LD          L+ RD  L+  IV   ++  
Sbjct: 1   MTPN-NPRLLAVETLSRVTGQGGYSNLTLDHVINSHK---LTPRDAGLLTNIVYGVIQHQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   +     +    ++ LL ++V Q+ YLD V   AV   + E AK+   ++ 
Sbjct: 57  LTLDFYLAPFIKG--RKLDNWIRCLLDIAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172
            AK V  +LR   R        IA         S  P W  E+L    G+ +  AI +  
Sbjct: 114 IAKFVTGVLRNAQRTGFPDPAAIADPVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVI 173

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224
             P +  L V     T A  L ++              I L      +     F +G + 
Sbjct: 174 NVPAHASLRVNTTKITPAALLASLKPEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT  +        G +VTALD+   ++  +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293

Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  RL L        +DA       P   FD +LVDAPCS  G IRR P++ +T+  +
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATTFPANSFDKILVDAPCSGLGLIRRKPEIKYTKTPE 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D       Q  +L      +K GG + +S C++ K+++++VV + L + P   ++     
Sbjct: 354 DPAHLQQIQLAILNSVAPTLKIGGRLTYSTCTMVKEENQDVVAQFLAAHPEFEQVSVPTL 413

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   A A      +++ PD  +         DGFF  +L R
Sbjct: 414 KPLHKAHNAPA------LQLFPDDYD--------TDGFFIASLIR 444


>gi|323127837|gb|ADX25134.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 440

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 112/450 (24%), Positives = 204/450 (45%), Gaps = 36/450 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  L
Sbjct: 10  RGKALLTLEHIFDQGAYTNIALNQQLSNKA---LSTKDRALLTEIVYGTVSRKISLEWYL 66

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +     +    +  LL +S+ Q++YLD    +A+V+ AV  AK     +   K VN+
Sbjct: 67  AHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 125

Query: 127 ILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLY 177
           ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S   
Sbjct: 126 ILRQFTSHPLPDMGTIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKAS 185

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           I +T    +E  A  L+A         L +      +   F  G   +QD S+ +     
Sbjct: 186 IRVTDPLKLEKIAEDLDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTL 245

Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
               +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    +  
Sbjct: 246 NIDGDEIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIETR 305

Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L   
Sbjct: 306 KLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSV 365

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +G
Sbjct: 366 CQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKDG 417

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ ITP+  +         DGFF   +RR+
Sbjct: 418 YLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|251783087|ref|YP_002997390.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391717|dbj|BAH82176.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 452

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 112/450 (24%), Positives = 204/450 (45%), Gaps = 36/450 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  L
Sbjct: 22  RGKALLTLEHIFDQGAYTNIALNQQLSNKA---LSTKDRALLTEIVYGTVSRKISLEWYL 78

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +     +    +  LL +S+ Q++YLD    +A+V+ AV  AK     +   K VN+
Sbjct: 79  AHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 137

Query: 127 ILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLY 177
           ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S   
Sbjct: 138 ILRQFTSHPLPDMGTIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKAS 197

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           I +T    +E  A  L+A         L +      +   F  G   +QD S+ +     
Sbjct: 198 IRVTDPLKLEKIAEDLDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTL 257

Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
               +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    +  
Sbjct: 258 NIDGDEIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIETR 317

Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L   
Sbjct: 318 KLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSV 377

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +G
Sbjct: 378 CQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKDG 429

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ ITP+  +         DGFF   +RR+
Sbjct: 430 YLIITPEQYQ--------TDGFFIGQVRRV 451


>gi|91204618|emb|CAJ70846.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 462

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 114/488 (23%), Positives = 192/488 (39%), Gaps = 83/488 (17%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+ RL S  +L  V  K +    L++          +S+RD+ L+  +VN   R    +D
Sbjct: 1   MDVRLESIRILRKVDEKDVLAQELVEE---RCQQTNVSRRDKHLLLELVNGITRHRLSLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L F       + +  L   LR+ + Q+++LD +   A V+ +VE  K        A+ 
Sbjct: 58  TILSFFSKIPPQKIEPWLLYALRLGIYQMIFLDKIPHSAAVNTSVELVKNLIRRPDAARF 117

Query: 124 VNSILRRVSREKIELLQ------------------------------------RIAGISI 147
            N+ILR V R                                            IA    
Sbjct: 118 ANAILRAVDRTIKNKYSVNHKNVNQQKLLYKKENVWCEFSEPIFPDPGENLTSYIAKNYS 177

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI------ETWAHKLNAVMLPTG 201
            PEW  +R    YG ++ + I  A      + L +  +        +   +   +     
Sbjct: 178 HPEWLIKRWLTRYGIDKTIEICKANNHIPTLSLRINHNKTSINEFASLLEQNGILARVID 237

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN----LSVLDLCAAPGGKTA 257
              L      +  +PGF+ G++ VQD ++                +++LD+CAAPGGKT 
Sbjct: 238 NNALIINKSVVSDIPGFSNGLFSVQDITSMKVGTFLIAETPTAGAITLLDMCAAPGGKTT 297

Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLV 312
            +   I +   + ALD+S +RL +++ N  RL +    II  D        +  FD VL 
Sbjct: 298 HIAEIIQNKGSIYALDISLKRLHRVKENCQRLGIKNITIICCDASEGKIPFRGKFDRVLA 357

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS+TG + R  +  W     +I + A  Q  LL  G + +K  GI+V+S CS++ ++
Sbjct: 358 DVPCSNTGVLSRRVEARWRITEKNIKQLAALQYSLLKTGSTMLKQDGILVYSTCSIEPEE 417

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           ++EVVQK L++ P                            +   D  +      +  DG
Sbjct: 418 NQEVVQKFLKNEP----------------------------QFYLDKEDCYSPEINKGDG 449

Query: 433 FFAVALRR 440
            +   +R+
Sbjct: 450 GYMARIRK 457


>gi|324994072|gb|EGC25986.1| RNA methyltransferase Sun [Streptococcus sanguinis SK678]
 gi|327459278|gb|EGF05624.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1]
 gi|327472704|gb|EGF18131.1| RNA methyltransferase Sun [Streptococcus sanguinis SK408]
 gi|327490496|gb|EGF22277.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1058]
          Length = 438

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 190/453 (41%), Gaps = 38/453 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR     +L  V  +       L+     S    LSQ D+ LV  +V  T+     ++  
Sbjct: 8   ARWQVLEILEEVFEEGAYSNIALNRALNQSL---LSQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  ++     +    L  LL +S+ Q+LYLD +  +A V  AVE AK  K  R   K VN
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAVEIAKIRK--RGSEKFVN 121

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR                +R +    +P W  + L   +G+ER LAI  +    S  
Sbjct: 122 ALLRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T           L A         L +          F  G   +QD S+ +    
Sbjct: 182 SIRVTDMSRKAELRQLLGAENSLLSPSALVKRQGHFAGHQLFERGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD C+APGGKT  +   ++   +TALD+   +LE +  N  RL L      
Sbjct: 242 LAIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAKRLGLADKITT 301

Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L  
Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +
Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVKKFLASHPNFEQVLLDHE--------RKDIVKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G I ITP++ E         DGFF    R++ +
Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438


>gi|149011398|ref|ZP_01832645.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75]
 gi|147764388|gb|EDK71319.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75]
          Length = 438

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 123/451 (27%), Positives = 199/451 (44%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V   +      L+     S    L   D+ LV  +V  T+     ++  
Sbjct: 8   ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARKLTLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     +   KLVN
Sbjct: 65  LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++    +  
Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     L A         L +          FA+G   +QD S+ +    
Sbjct: 182 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +      
Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDWVQT 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q ++L  
Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +  GGI+ +S C++  +++ +VV+  L S P             K       +  +
Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436


>gi|88860599|ref|ZP_01135236.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Pseudoalteromonas
           tunicata D2]
 gi|88817194|gb|EAR27012.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Pseudoalteromonas
           tunicata D2]
          Length = 429

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 114/451 (25%), Positives = 201/451 (44%), Gaps = 42/451 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R +++  L  V+ + +SL  +L       A +  +     L++ +    LR LP ++ 
Sbjct: 3   NVRALAAETLYQVVDQGLSLNQVLPAAAAKVAVKEKA-----LLQQLCYGVLRQLPSLEH 57

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
               +L   L  K+   Q L+ V + Q+ ++    +A V   V  A +  +      LVN
Sbjct: 58  YCRTLLTKPLKGKQRVFQFLVYVGIYQLQHMRTPAHAAVAETVN-ALQALQAPGLKGLVN 116

Query: 126 SILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDL 180
           ++LR   R++ E      Q    +   P WF + ++  Y  K + +  ++   +P+++ +
Sbjct: 117 AVLRNFQRQQAELEAAANQVEVCLYNHPGWFIKAVQEAYPEKWQTILAANQQQAPMWLRI 176

Query: 181 TV-KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
              ++  + +   L    +            L E P  + SLPGFAEG   VQD +A I 
Sbjct: 177 NQSQYSTDQYLALLTEANIVARKVDGFCDAVLLEKPCDVFSLPGFAEGACSVQDGAAQIA 236

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290
            +L        +LD CAAPGGKT  ++       VTALD  + RL +++ NL R+ L A 
Sbjct: 237 ARLMAPQAGERILDACAAPGGKTCHILELADNLAVTALDCDETRLARVQENLSRIGLQAQ 296

Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                  +   +  K+ FD +L+D PCS+TG IRRHPD+ W R   DI + A  Q  +L 
Sbjct: 297 LLCADAANPDTWWDKETFDKILLDVPCSATGVIRRHPDIKWLRRAADIEQLALLQSSILD 356

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    +K GG +V++ CS+  Q++++ V+  L  +   +                +    
Sbjct: 357 KIWPLLKAGGTLVYATCSVLPQENKDQVKAFLARTDDAI----------HQPLHDLDTHE 406

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   +  P++           DGF+   + +
Sbjct: 407 QPGWQFLPEL----------TDGFYYAKITK 427


>gi|325126062|gb|ADY85392.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 438

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 201/458 (43%), Gaps = 44/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  NAR V+   L  V+ +       L+     +    L   +  L   +V  T+++ 
Sbjct: 1   MKT--NARTVALATLMKVINQGSYSNISLNHALKAAK---LPDEESRLATNLVYGTIQYQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L  ++ + L      ++ LL +S  QI +LD V + AV+D A + AK     + 
Sbjct: 56  LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKS 113

Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173
              +LVN ILR + R    L ++ A         +P W  +     +GK R   I  +  
Sbjct: 114 SGYRLVNGILRSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226
           S     I ++   D +     L+          L     ++          F +G   VQ
Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+  + F    N   LD C+APGGKT Q    +   +VTALD+ +++L  ++ N  
Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293

Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+ +     +  +DA     Y   + FD +L+DAPCS  G +RR P++ +T+  +DI   
Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L +    +K GG +V+S CS+  +++EE V+K L + P             K 
Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + A   +P+G ++I PD            DGFF    
Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434


>gi|116514363|ref|YP_813269.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093678|gb|ABJ58831.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 438

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 201/458 (43%), Gaps = 44/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  NAR V+   L  V+ +       L+     +    L   +  L   +V  T+++ 
Sbjct: 1   MKT--NARTVALATLMKVINQGSYSNISLNHALKAAK---LPDEESRLATNLVYGTIQYQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L  ++ + L      ++ LL +S  QI +LD V + AV+D A + AK     + 
Sbjct: 56  LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKS 113

Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173
              +LVN ILR + R    L ++ A         +P W  +     +GK R   I  +  
Sbjct: 114 SGYRLVNGILRSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226
           S     I ++   D +     L+          L     ++          F +G   VQ
Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+  + F    N   LD C+APGGKT Q    +   +VTALD+ +++L  ++ N  
Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293

Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+ +     +  +DA     Y   + FD +L+DAPCS  G +RR P++ +T+  +DI   
Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L +    +K GG +V+S CS+  +++EE V+K L + P             K 
Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + A   +P+G ++I PD            DGFF    
Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434


>gi|297184252|gb|ADI20370.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 430

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 150/438 (34%), Positives = 237/438 (54%), Gaps = 15/438 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR  +  LL  V+ +R  L  +++    DS    L   ++   +++   TLR L 
Sbjct: 3   KPGLFAREAAVRLLHAVLLERRLLIDIVN--GEDSLLIDLEPSERARAQSLAMTTLRNLG 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            ID VL   L     +  ++L  +LRVS A++L   +A +A VD AV  AKR  +  H  
Sbjct: 61  PIDFVLQKYLTK---QTPFALLNILRVSAAEMLVDGIAAHAAVDSAVTMAKRRHKTAHLK 117

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            L N++LR+V+ E +E+ + +     +P+ F+ ++     KE + +I  +  +   +DL+
Sbjct: 118 DLANAVLRKVASEGMEIFEGLEPQ-ELPKAFRSQMAKIVTKEEMTSIERSHQAGAPVDLS 176

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
            K   +  +   N+  +      ++ +    I  + GF +G WWVQD +ASIP + FG L
Sbjct: 177 FKDIKKANSFIENSNGIMMPNGSVRLKRAGQITEMNGFLDGDWWVQDLAASIPAKCFGDL 236

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +   VLDLCAAPGGKT QL   GA VTALD+S +RLE+++ NL+R  L A  I   DA  
Sbjct: 237 SGKKVLDLCAAPGGKTMQLASMGATVTALDISSKRLERVKQNLERTKLKANCI-AADALK 295

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P + FDA+L+DAPCS++GTIRRHPD+ + ++  D+ +    QR LLL+  +++ PGGI
Sbjct: 296 WKPVECFDAILLDAPCSASGTIRRHPDLPFAKENFDLGELLKLQRALLLKASNWLVPGGI 355

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++S CS+   + E  VQ + + +     L+P               + +G IR+ PD  
Sbjct: 356 LIYSTCSIFSAEGEGQVQWLAKQNND---LIPQKIDPKLIGLSDYMANKDGQIRLRPDFF 412

Query: 421 EKIDGVSSGMDGFFAVAL 438
             +     GMDGFF    
Sbjct: 413 ADL----GGMDGFFVAKF 426


>gi|111657689|ref|ZP_01408417.1| hypothetical protein SpneT_02001123 [Streptococcus pneumoniae
           TIGR4]
 gi|149002037|ref|ZP_01826991.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147759846|gb|EDK66836.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 438

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 123/451 (27%), Positives = 199/451 (44%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V   +      L+     S    L   D+ LV  +V  T+     ++  
Sbjct: 8   ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARKLTLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     +   KLVN
Sbjct: 65  LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR+ RE            +R +    +P W   +L+  YG+ER  AI ++    +  
Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     E     L A         L +          FA+G   +QD S+ +    
Sbjct: 182 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL +      
Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDRVQT 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q ++L  
Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +  GGI+ +S C++  +++ +VV+  L S P             K       +  +
Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    R++
Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436


>gi|53803078|ref|YP_115239.1| sun protein [Methylococcus capsulatus str. Bath]
 gi|53756839|gb|AAU91130.1| sun protein [Methylococcus capsulatus str. Bath]
          Length = 431

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 187/450 (41%), Gaps = 39/450 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            +R +++  L  V+  R SLT  L              RD+  V+++    LR    +D 
Sbjct: 4   KSRTLAAAALHDVVVDRHSLTWALGKRLPSLP----DARDRAFVQSLCYGVLRAFETLDF 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA-KRDKENRHFAKLV 124
           +L  +    +      ++ L  + + Q+  ++V  +A V   VE A ++         ++
Sbjct: 60  LLGRLATKPIR--DPEIRLLALIGLHQLRSMNVKPHAAVSETVEAAGRKSWAKPLLNAIL 117

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
            + LRR    +   LQ        P W ++RL   +  E+   +      P  + L V  
Sbjct: 118 RNYLRRKEELESRALQDPESRDAHPAWLRDRLAADWP-EQWETLVQQNNLPPPMTLRVNP 176

Query: 185 ---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQ 235
              D   +  +L    +     R          P  + +LPGFAEG   VQD +A +   
Sbjct: 177 LMNDRAGYLARLTEAGIAARPCRHSPWGLTLGSPVPVDALPGFAEGRVSVQDEAAQLAAP 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G      VLDLCAAPGGKT  +        +  A+D    R  ++R NL+R  L A  
Sbjct: 237 LVGAEPGERVLDLCAAPGGKTLHMLELSRGDIEAVAVDSDAERCARIRENLERERLSAAV 296

Query: 293 I--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +         +   + FD +L+DAPCS+TG IRRHPD+   R   D+      Q  +L  
Sbjct: 297 VTGDARSPESWWDGRPFDRILLDAPCSATGVIRRHPDIKLLRQAVDLDTLNELQAAILTA 356

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +KPGGI+V++ CS+ + ++E  + + L +     EL          +  A  +   
Sbjct: 357 AWPLLKPGGILVYATCSVIRAENEAQMSRFLEAHDDAAEL---------PLPAAWGIPLR 407

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +I            SGMDGF+   LR+
Sbjct: 408 HGRQIL--------TGESGMDGFYYALLRK 429


>gi|238916656|ref|YP_002930173.1| Sun protein [Eubacterium eligens ATCC 27750]
 gi|238872016|gb|ACR71726.1| Sun protein [Eubacterium eligens ATCC 27750]
          Length = 434

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 181/464 (39%), Gaps = 55/464 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R V   +L  +  K      L++     + ++ L +  +  +  +   T+   
Sbjct: 1   MTDSVNLRAVVLDILMEINEKGEFSHLLINNAL--TKYQYLDKNKRAFISRLSLGTIENR 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D ++D    + + + K  ++ +  +SV QI+Y+D + D AV + AV+ A + +    
Sbjct: 59  IELDYIIDQYSKTPVRKMKPLIRNICEMSVYQIIYMDNIPDSAVCNEAVKLATK-RGFTG 117

Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
               VN +LR                ++ Q ++    +P W  +   +  G +    I  
Sbjct: 118 LKGFVNGVLRNIARNKDNISYPDRNKDIEQYLSVKYSMPLWIVKMWHSQLGIDMTEEILA 177

Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221
                    +       T               A +         +  + I  L  F +G
Sbjct: 178 GFKQEKKTYIRCNTAKATVEEIKKILSQESVSVAEVEGIQYALEIKDYDYIAGLKSFRDG 237

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEK 278
           ++ +QD S+     + G     +V+D+CAAPGGK+    +S     KV + DVS  +   
Sbjct: 238 LYQIQDISSMTAGYMTGFKAGDTVIDVCAAPGGKSINAAISVGADGKVYSRDVSDYKAGL 297

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N+ RL L   ++   DA       ++  D V+ D PCS  G + R PD+ +    D 
Sbjct: 298 IEENVLRLGLNNIEVQVKDALVMDESMREKADVVIADLPCSGLGVMGRKPDIRYNITEDK 357

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +V     Q+ +L    ++VK GGI+++S C+++ +++E     + +              
Sbjct: 358 LVSLKELQQSILSVVQAYVKQGGIMMYSTCTINSEENEANADWLCKEY------------ 405

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          + +I P         + G DGFF   LRR
Sbjct: 406 ---------GFKKIEYRQILPGK-------NGGTDGFFVAKLRR 433


>gi|148554856|ref|YP_001262438.1| Fmu (Sun) domain-containing protein [Sphingomonas wittichii RW1]
 gi|148500046|gb|ABQ68300.1| Fmu (Sun) domain protein [Sphingomonas wittichii RW1]
          Length = 422

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 135/441 (30%), Positives = 202/441 (45%), Gaps = 26/441 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G  AR  +  LL  V+R+ + L   +D    D         D+    AI    LR   
Sbjct: 5   STGTPARRAALRLLDAVLRRGLPLEAAMDGACADLDRAD----DRGFAHAIAAEVLRRTA 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +DA++D      LP      + +LR+++AQ L L    +A +   +             
Sbjct: 61  DLDALIDGATERPLPA-DAKARMVLRIALAQALALGTPGHAAITTVLPLVD--------- 110

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
                ++  V    +     +     +P    +R    +GK+   A   +   P  +DLT
Sbjct: 111 GGPRKLVHAVFGAVMRDGAALPDPPHLPPAVADRWAASWGKDAAEAARASLGGPPPVDLT 170

Query: 182 VKFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           +K D +T  WA +L+   L  G +R+      IV LPG+ EG WWVQD +A+IP +L G 
Sbjct: 171 LKPDADTADWAARLDGESLAPGHVRIAAG-RRIVDLPGYDEGAWWVQDIAAAIPARLLGA 229

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
                 LDLCAAPGGKT QL  +G  VTA+D+S+ R+ +L  NL+R  L AE  I   A 
Sbjct: 230 GEGRRALDLCAAPGGKTMQLAAAGWAVTAVDLSEARMARLAENLERTGLAAEARIAD-AA 288

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +     +DAVL+DAPCS+TG  RRHPDVL       + ++A  Q +L+      V PGG
Sbjct: 289 AFAEGAPYDAVLLDAPCSATGIFRRHPDVLHRAGPRIVAEAAELQARLIDHAAGLVAPGG 348

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V++ CSL+  + E++ +      P       ++      +    A    G +R+ P  
Sbjct: 349 RLVYAVCSLEADEGEQIAKGFAARHPDWA----IDPVATDELPQGFAPDKVGRVRVRPGT 404

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           L        G DGFF    RR
Sbjct: 405 LAD----RGGADGFFVARFRR 421


>gi|329770489|ref|ZP_08261867.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325]
 gi|328836238|gb|EGF85907.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325]
          Length = 441

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 102/459 (22%), Positives = 190/459 (41%), Gaps = 39/459 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S +NAR V    L  +          L+  +       + ++++  +  IV  TL+    
Sbjct: 2   SNINARKVVYDTLYEIFYNEAYSNITLNKFFK---QNGIEEQNKRFISEIVYGTLKNKLF 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ++ +L         R K  ++ +L +S+ QI ++D   ++AV+D AV+ +K+   N    
Sbjct: 59  LEHILKTYSKG---RVKPKVKVILLMSIYQIKFMDKTPNFAVIDEAVKLSKKIAGN-ITG 114

Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           K VN ILR + R             ++    +  P    + L + YG  +  AI ++  +
Sbjct: 115 KFVNGILRNIERNINDLALKYKNSEEQFCIENSCPFELYKILVDQYGNNKAKAIIESFNN 174

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP----GFAEGVWWVQDASA 230
                +    +  T    L  +        + E    I  L      F EG + +QD ++
Sbjct: 175 KSENSIRYNPNKVTKKELLEILGNDAKESTICEDSIIIDKLDINSKYFKEGYYIIQDEAS 234

Query: 231 SIPVQLF--GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++              +LD CAAPGGK+  +      + + + D    +L  ++ N+ RL
Sbjct: 235 ALVACSIGENIEEKYKILDTCAAPGGKSLHIASKYLNSTLISCDKYIHKLALIKDNIKRL 294

Query: 287 HLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   D+ E D    +      FD V+ D PCS  G I+  P++ +      +   +  Q
Sbjct: 295 GITNIDVKEQDATNINSSFINNFDIVVCDVPCSGIGVIKNKPEIKYKITNKYVEDISKLQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L    ++VK GGI+++S C++DK+++ E +++ L  +   V            I+  
Sbjct: 355 YQILENSKNYVKKGGILMYSTCTIDKRENIENIERFLEENKNFV------LDKINLINSD 408

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +     G + I PD            DGFF   LR+L +
Sbjct: 409 VKAEENGVLEILPDDY--------NCDGFFIAKLRKLEE 439


>gi|103486536|ref|YP_616097.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256]
 gi|98976613|gb|ABF52764.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256]
          Length = 437

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 131/437 (29%), Positives = 208/437 (47%), Gaps = 26/437 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R  +  LL  ++R+   L   +      +A + L   D+    AI +  LR++  
Sbjct: 23  PGLAPRRAALRLLDAIVRRGDPLDVAM-----HAAAQGLVGADRAFAVAIASEALRWMTD 77

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           IDA++D      LP      + +LR+++AQ+L L    +AVV  A+              
Sbjct: 78  IDALVDGATAQPLPD-DVKSRAVLRIALAQLLVLKSPGHAVVATALPLVD---------G 127

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
               ++  +     +    +   + +P    ER    +G   + A +++   P  IDL+ 
Sbjct: 128 GPRRLVHAILSRAQKEKWELPARASLPPAAAERWTAQWGATMIEAAAESWSVPPPIDLSF 187

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
             +      +    +      R     +++ ++PGFAEG WWVQD +AS+P +L G    
Sbjct: 188 AAEPA--PDEWPDAVALAPRHRRLPRGQAVEAMPGFAEGGWWVQDLAASLPARLLGAGAG 245

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            ++LDLCAAPGGKT QL  +   VTA+D S RRLE+LR NL R  L A  + + D   + 
Sbjct: 246 RTILDLCAAPGGKTMQLAAANWAVTAVDSSARRLERLRANLTRTGLAATIV-QGDIRTWE 304

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P    DAVL+DAPCS+TG  RRHPDV+   +   I + A  Q  LL +   +VKPGG +V
Sbjct: 305 PDAAADAVLLDAPCSATGIFRRHPDVIHRIEPRQIEEMATLQAGLLARAAKWVKPGGTLV 364

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CSL++ + E+ V   L +         +++A    +   +     G +R  P  +  
Sbjct: 365 YATCSLERAEGEDQVAAFLDAHRGWA----IDAARPDELATGITPDINGCVRTLPGQIAD 420

Query: 423 IDGVSSGMDGFFAVALR 439
                 G+DGFF   LR
Sbjct: 421 A----GGLDGFFIARLR 433


>gi|325913038|ref|ZP_08175411.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners UPII 60-B]
 gi|325477718|gb|EGC80857.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           iners UPII 60-B]
          Length = 437

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVQTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  E+ + ++ ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKTKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL      +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ +++L  ++  L 
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293

Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           RLH   + I++        +Y   + FD +LVDAPCS  G IRR P+V + +  +D+   
Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           +  Q  +L      +   G +V+S C++  +++E+VV++ L + P    L P        
Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 LS    I+I PD            DGFF     +
Sbjct: 410 ------LSNCKMIKIFPDDY--------NSDGFFIAKFVK 435


>gi|160945218|ref|ZP_02092444.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442949|gb|EDP19954.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii
           M21/2]
          Length = 443

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/455 (21%), Positives = 180/455 (39%), Gaps = 40/455 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R V+   L    +       +LD E      + L  RD+    AI    L     +D 
Sbjct: 4   NPRAVAVAALVRQEQNG-FSNLVLDAELKR---QKLEGRDKAFASAIFYTVLEHRGTLDY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L+  L   L +    ++++LR ++AQ  Y+ V   A V+ AV+  +  K++   + LVN
Sbjct: 60  ILEQFLPKGLAKLDAPVREILRAALAQARYMQVPVSAAVNEAVKLTRTFKKS-SASGLVN 118

Query: 126 SILRRVSREKIELLQRIAGISII-----PEWFKERLENFYGKERVLAISDACISPLYIDL 180
           ++LR+     ++       I  +           +  +    +  L I           L
Sbjct: 119 AVLRKACGYDLDAAVFTGEIQRLMVLGSAGLDVAKFLHKNYPDEALGILTYQADGGLTSL 178

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASA 230
                ++  A +L A++   G   +++             S      F +G + V+  ++
Sbjct: 179 RANP-LKASAAQLCALLTEQGAAEVRQGIVPGSVLARFAGSPADNELFRQGYYHVEGQAS 237

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +     G     +VLDLCAAPGGKT    + +    ++ + D ++ R+  +R  +DR+ 
Sbjct: 238 QLAALCVGAAPGETVLDLCAAPGGKTILLAEQMQGTGELYSCDAAENRVGLIRTAVDRMG 297

Query: 288 LYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDT-DDIVKSACFQR 345
                 +  DA    P     D +L D PCS  G + + PD+ + +       +    Q 
Sbjct: 298 FTGVHTLCNDATKPNPALPMADRILTDVPCSGLGILAKKPDLRYKKLEAARQAELLATQA 357

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L    + +K GG +V+S C++D  ++++ +   L+  P      P        +   M
Sbjct: 358 AILDTAAALLKAGGRLVYSTCTIDPAENQKQIAAFLQRHPEFAVCAPDVP-----LPAGM 412

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                G + +            +GMDGFF   L++
Sbjct: 413 TAGEYGCLSV---------PTRTGMDGFFLCVLQK 438


>gi|159045573|ref|YP_001534367.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter
           shibae DFL 12]
 gi|157913333|gb|ABV94766.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter
           shibae DFL 12]
          Length = 443

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 152/429 (35%), Positives = 227/429 (52%), Gaps = 21/429 (4%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +R+SL       +    F   +  ++   + +    LR L   D +L   L      
Sbjct: 20  VLSERMSL--ADQTAHPKGPFAECAPAERARAQRLATGVLRHLRTCDQMLGPHLRMPPY- 76

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              ++  +LR+   ++  L  A + VV  AV+ A+ +        LVN++LR+V+     
Sbjct: 77  --PAIHNILRLGAYELCALGEAPHGVVHAAVDLARAEDPQSRAPGLVNAVLRKVADLGPA 134

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET--WAHKLNA 195
           L         +P+ F++ L   +G + V+    A  +   +DLT++   E   WA +L A
Sbjct: 135 LWAAAPPA-QLPKPFRKGLVKVWGNKTVIGFEAAHGAGAPLDLTLRDPSEAALWADRLGA 193

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
           V+LPTGG+RL +    +  LPG+AEG WWVQDA+AS+P +  G +    VLDLCAAPGGK
Sbjct: 194 VVLPTGGLRLSDA-GQVSQLPGYAEGAWWVQDAAASLPARALGPVVGARVLDLCAAPGGK 252

Query: 256 TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315
           T QL  +GA+VTALD+S  R+ +LR NL R  L AE +I  D   Y  +  FDA+L+DAP
Sbjct: 253 TLQLAAAGAQVTALDISDARVARLRENLARTGLAAEVVI-ADGLTYAAETPFDAILLDAP 311

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS+TGTIRRHPD+ + RD  D+      Q  LL + +  ++PGG +VF+ CSL   + E+
Sbjct: 312 CSATGTIRRHPDLPFLRDLSDLSDLTALQAGLLDRAVGLLRPGGRLVFATCSLLPAEGED 371

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            V   L   P   + VPL+     +   A  L+  G +R+ PD   +      G+DGFF 
Sbjct: 372 QVAAALARHPGLAQ-VPLSDLAGSA---AEWLTDTGALRLRPDFWAE----RGGLDGFFI 423

Query: 436 VALRRLIQP 444
            AL    +P
Sbjct: 424 AAL---AKP 429


>gi|330876378|gb|EGH10527.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 448

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 197/456 (43%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +           RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   L    L        +       P  + SLPGFAEG   VQD +A 
Sbjct: 174 RVNRRHHSRDQYLELLKTAGLEASACMFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NL+RL L
Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLERLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        D   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +
Sbjct: 294 EAELIAADARDTAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPAENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                          ++     G DGF+   L ++ 
Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           minor NM305]
 gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           minor NM305]
          Length = 444

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 128/456 (28%), Positives = 208/456 (45%), Gaps = 41/456 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   NAR V++H++  V+ +  SL  L+       A   +  +D  LV+ I     R L
Sbjct: 9   MKKKQNARAVAAHIILQVLDQGKSLATLIPE-----AQSQVESKDLPLVQEIAFGVCRVL 63

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V   K  K +  F
Sbjct: 64  PRLENIIKQLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAAVDEVVNATKSLKLD-SF 122

Query: 121 AKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             L N +LRR  RE+  +         ++ PEW   +L+  Y   R +  ++    P++I
Sbjct: 123 RALTNGVLRRFLREQETILAKVDKHWQTLHPEWLVNKLKKAYPNWREIVEANNQKPPMWI 182

Query: 179 DLTVKFDIET---------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            +  +                +  NA           +   S+  LP F +G   VQDA 
Sbjct: 183 RVNTQHTNRADYIGLLGDLAKNTENATAYLPDCAIALDKAVSVNRLPHFEQGWATVQDAH 242

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A    +L    N   +LD CAAPGGKT  ++    +  V ALD+ + RL +++ NL RL+
Sbjct: 243 AQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKENLARLN 302

Query: 288 LYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
             A  I               +FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q
Sbjct: 303 QRATVICGDASQPEQWLDNGVMFDRILLDAPCSATGVIRRHPDIKWLRKEEDIAELAALQ 362

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            K+L    + +KP GI++++ CS+  +++ E +Q+ + ++P    +              
Sbjct: 363 SKILNALWARLKPNGILLYATCSILPEENTEQIQQFIANTPNAKLVE------------- 409

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           M    E  +       ++    + G DGFF   L +
Sbjct: 410 MDFHGEKML------EKQFFPQNHGGDGFFYAKLLK 439


>gi|260584743|ref|ZP_05852489.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
           elegans ATCC 700633]
 gi|260157766|gb|EEW92836.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
           elegans ATCC 700633]
          Length = 441

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 209/461 (45%), Gaps = 48/461 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R     LL  V + +   T  L        +   + +D+ L+  +   T++    ID 
Sbjct: 3   KVRNAVVDLLVQVEQDQSYSTISLKKVIEQQKW---TAKDKGLLTELFYGTIQRKMTIDF 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +  +  + +  ++QLLR+S+ Q+++LD + D+A +  AV+ AK+ + ++  AK V
Sbjct: 60  YLAPYIQKA-KKIQPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKK-RGHQGIAKFV 117

Query: 125 NSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N +LR   R          +  +R++    IP+W  +  +  YG E+   IS++ ++   
Sbjct: 118 NGVLRNFQRNDLRSFEEIKDTDERMSVQYSIPKWMYQLFKQQYGVEQAQQISESILTAPS 177

Query: 178 IDLTVKFD---IETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           + + ++ +    E     L    + T         L     ++     F +G+  +QD +
Sbjct: 178 VSVRIQPNHLNQEQVKQLLLEEGVQTRESTLSNRCLIVEEGNVFLSKTFEKGIITIQDEA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLD 284
           +S+  Q+        VLD CAAPGGKT  +        G +V ALD+ + +L+K++ N  
Sbjct: 238 SSLVAQVANLKPTNKVLDTCAAPGGKTTHIASYLDPSKGGRVDALDLYEHKLKKIQENAK 297

Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           RL +     + +    +A +  P + FDAV VDAPCS  G +RR PD+ +T+   D+   
Sbjct: 298 RLQVDDCISMRILDARNAQEAYPTESFDAVFVDAPCSGLGLVRRKPDIKYTKSLKDLKSL 357

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +LL     VK  G +V+S C+++K ++ E+V + L  +P   E+ P+     K 
Sbjct: 358 EKIQLDILLSASKMVKSKGSLVYSTCTINKAENRELVNQFLEENP-AFEIEPIGKWIHKD 416

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +          I I P+            DGF+   L + 
Sbjct: 417 TE---------DITILPNDF--------NSDGFYICKLVKK 440


>gi|184155726|ref|YP_001844066.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
 gi|183227070|dbj|BAG27586.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
          Length = 448

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 195/466 (41%), Gaps = 44/466 (9%)

Query: 1   MKSGMN----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M         AR ++   L  V          L+          LS  D+ LV A+V  T
Sbjct: 1   MTKKQAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ---LSGADRRLVTALVYGT 57

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
           L+    +D  L   +     + +  ++ LL +++ Q  YLD V ++A  D A+E AKR  
Sbjct: 58  LQHQRTLDYWLSPFIAG--KKVRPWVKTLLLMALFQYQYLDRVPNFAATDEAIEIAKRRG 115

Query: 116 EN---RHFAKLVNSILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
                R    ++++ILR       +  +  QR+A  + +P+W  + L   YG  +  A++
Sbjct: 116 NPGVRRFVTGVLHAILRNGVADVEKIEDPKQRLAIQASLPDWLVDELVAQYGLAQTEALA 175

Query: 170 DACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEG 221
                P  I L V     T            +           L     +++    F  G
Sbjct: 176 KVINEPARISLRVNRAKATVEEAQALLRSAGVETKPSEVAQNGLVVTKGAVLKTAAFKNG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKL 279
           V  +QD SA + V+      +  VLD CAAPGGKT Q+  +    +V ALD+ + ++  +
Sbjct: 236 VVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAETLTDGEVYALDIHRHKVGLI 295

Query: 280 RCNLDRLHLYA-EDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  R+ +       ++DA     +   + FD +LVDAPCS  G +RR P++ + +   
Sbjct: 296 EKNAQRMGVDDRVFACQLDARQVGQEFADQFFDQILVDAPCSGMGLLRRKPEIRYDKQLG 355

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D  +    Q  +L    + VK GGI+ +S C++ +Q+++E V + L+  P         +
Sbjct: 356 DSQRLHQIQGAILDSVATKVKKGGIITYSTCTILRQENDETVAEFLKHHPNFRLQKTTTA 415

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              K    A  L+      + P           G DGFF   L+R+
Sbjct: 416 RMLKDNRQAQTLT------LLPSDY--------GSDGFFISNLQRV 447


>gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 269-3]
 gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii SJ-7A-US]
 gi|282933871|ref|ZP_06339219.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 208-1]
 gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 269-3]
 gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii SJ-7A-US]
 gi|281301960|gb|EFA94214.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           jensenii 208-1]
          Length = 437

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 209/459 (45%), Gaps = 45/459 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR V+   L  V +++      L     ++    LSQ+DQ  V  +V  T+++ 
Sbjct: 1   MTNS--ARAVALATLIKVFKQKSYSNLSLSHALNEN---NLSQKDQAFVTQLVYGTIQYQ 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRD-KENR 118
             ++  L  +L + L      L+ LL +SV Q+++L  V + AV+D A + AK   K+N 
Sbjct: 56  LFLEYQLKDLLRTKLKED--YLKPLLLMSVYQLIFLNRVPNRAVLDEANKLAKDFGKKNS 113

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISII------PEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR   R    L      +  +      PEW  +     +G +R   +  + 
Sbjct: 114 SGFRLVNGILRSFLRRGQVLPSPKDPVHFLSIKESMPEWLVQYFVKNWGLKRTEKLLISL 173

Query: 173 ISPLYIDLTVKFDIE------TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  + V   ++      +   +  +V   T       +  SIV+   F  G   +Q
Sbjct: 174 NERAENSIRVAKGLDHSKIVNSLQKQGFSVNESTLADNCFIVDHSIVNTNEFKSGQITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+ V  F    N  VLD CAAPGGKT Q    +S  KVT+LD+ K++L  ++    
Sbjct: 234 DEAASLVVDCFDLRENDHVLDTCAAPGGKTTQLAENLSHGKVTSLDIHKKKLNLIKKYAQ 293

Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+H+    + + +DA     +     F+ +LVDAPCS  G +RR P++ + +   D+   
Sbjct: 294 RMHVDDRVETLALDARKAAEHFSDTKFNKILVDAPCSGLGLLRRKPEIRYDKTIKDVHNL 353

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L      +K  G +V+S CS+  +++E+V+ + L+  P   EL+P+  +  +S
Sbjct: 354 ARIQLAILDNVAQLLKKNGELVYSTCSITIEENEQVIAEFLKKHP-EFELMPITLSKVQS 412

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                       ++I PD          G DGFF   ++
Sbjct: 413 KSS---------LKILPDTY--------GSDGFFIAKMK 434


>gi|261367358|ref|ZP_05980241.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum
           variabile DSM 15176]
 gi|282570118|gb|EFB75653.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum
           variabile DSM 15176]
          Length = 437

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 103/456 (22%), Positives = 173/456 (37%), Gaps = 36/456 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R ++   L    +       +LD E        L  RD      I    L + P +D
Sbjct: 1   MTPRRLAVKALLHQEQAG-YANLVLDAELKKCT-PPLEGRDAAFAARIFYTVLEYQPLLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +LD      + R    ++ +LR  +AQ  +++V   A V+ +V+  K   +    A +V
Sbjct: 59  FLLDRFSKKPVARLDAPVRAILRAGLAQARFMEVPLPAAVNESVKLTKAMGKT-SAAGMV 117

Query: 125 NSILRRVSREKIELLQRIA-----GISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           N++LRR +   ++            I          L      E    ++ A  +     
Sbjct: 118 NAVLRRAAVYPVKEKDFADPLERLQIYDCLSRPVAALLYQEYGEETFDLAAAFRNRPVSA 177

Query: 180 LTVKFDI---ETWAHKLNAVML-----PTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
           + V       E     L A        P     L E   S  +   FAEG + VQ  ++ 
Sbjct: 178 VRVNTLRTTDEALIQALQAEGHTVRPGPWPHALLVEFQGSPAAGNSFAEGHYHVQGLASQ 237

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                        VLDLCAAPGGK    A+ + +  ++ + +V   R+  ++   +R  +
Sbjct: 238 FAALSLAVRPGQKVLDLCAAPGGKSLTLAEEMQNTGELISGEVLPGRVSLIQKAFERCGI 297

Query: 289 YAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                ++ D          FD VL D PCS  G I + PD+ + +D D +      Q+K+
Sbjct: 298 RCARAVQNDATVPRKEWGTFDRVLCDVPCSGLGVIAKKPDIRY-KDLDGMENLCAIQQKI 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L  G   +   G +V+S C+++ Q++++ V+  L   P    + P      +     M  
Sbjct: 357 LQNGADSLAENGRLVYSTCTINVQENQKQVENFLCDHPEFRVVAP------ELTLPGMEQ 410

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            P G +   P          +G DGFF   L +L  
Sbjct: 411 GPFGTL-FLPH--------KTGTDGFFVAILEKLST 437


>gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 430

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 193/460 (41%), Gaps = 51/460 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R  +  +++ V+ K   L   L++         + +RD   ++ I    +R  
Sbjct: 1   MK---NTREKALQIINDVLYKGTFLEESLEIL----KASNIDERDFAFIKEITTGVVRNK 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D V+         R    +  +L +++ Q+ +LD V DY++VD +V  AK    N+ 
Sbjct: 54  TYLDYVIRENSKVRFNRIHKIILSILEMAIYQMYFLDKVPDYSIVDESVNLAK-IYGNKG 112

Query: 120 FAKLVNSILRRVSREKIEL------LQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
                N ILR +S+EK         +  ++     P ++ E   + YG+E    +  A  
Sbjct: 113 SISFTNGILRSISKEKHLQVTLKNSIDNLSTYYSHPRFYTEYFYDKYGEEFTKKLLKANN 172

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
                 + V     + +     L                    P  I+    F +G ++V
Sbjct: 173 EKPPFTIRVNTLKINRDELIKNLTESGFDIEETTYVNALNVLNPNGIIDTEFFEKGHFYV 232

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QD  + +         +  VLDLCAAPGGKT  L   + +  ++ + D SK +++ ++ N
Sbjct: 233 QDLGSILVSTFLNPSKDSKVLDLCAAPGGKTTHLSELMDNTGEIISCDKSKGKIKLIKEN 292

Query: 283 LDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            +RL       +  DA     +    FD VLVDAPCS TG  R+ PD+ W +   D+ + 
Sbjct: 293 AERLGCTNISPMVNDARVLNEEFINKFDYVLVDAPCSGTGLYRKKPDIKWNKGIYDLKEL 352

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L +   +V+  G++++S CSL K ++E+V++  L+ +    ++  L       
Sbjct: 353 GVIQLEILNKAKEYVREKGLLLYSTCSLSKIENEDVIENFLKEN-ENFKIKKLRDKDV-- 409

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +++ P +         G DGF    L +
Sbjct: 410 ------------LKLFPSV--------DGSDGFSICLLEK 429


>gi|297184029|gb|ADI20149.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 430

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 158/439 (35%), Positives = 237/439 (53%), Gaps = 17/439 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR  +  LL  V+ +   L  +++    DS    L   ++   +++   TLR L 
Sbjct: 3   KPGLFAREAAVRLLHAVLLEHRLLIDIVN--GEDSLLIDLEPSERARAQSLAMTTLRNLG 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            ID VL   L    P   ++L  +LRVS A++L   +A +A VD AV  AKR  +  H  
Sbjct: 61  PIDIVLKKYLTKKPP---FALLNILRVSSAEMLVDGIAAHAAVDSAVTMAKRKHKTAHLK 117

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            L N++LR+V+ E IE+ +++     +P+ F+ ++     KE ++ I  +      +DL+
Sbjct: 118 DLTNAVLRKVASEGIEVFKKLEPQ-ELPKAFRSQMAKIATKEEIIRIERSHQIGAPVDLS 176

Query: 182 VKF--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            K     +T+    N +M+P G +RLK     I  + GF++G WWVQD +ASIP + F  
Sbjct: 177 FKDIKKAKTFLESYNGIMMPNGSVRLKRA-GQITEMNGFSDGDWWVQDLAASIPAKCFND 235

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           LN   VLDLCAAPGGKT QL   GA VTALD+S +RLE+++ NLDR  L A  I   DA 
Sbjct: 236 LNGKKVLDLCAAPGGKTMQLASMGAIVTALDISSKRLERVKQNLDRTKLKAHCI-AADAL 294

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            + P + FDA+L+DAPCS++GTIRRHPD+ + ++  D+ +    QR LLL+   ++ PGG
Sbjct: 295 KWKPAERFDAILLDAPCSASGTIRRHPDLPFAKENFDLGELLKLQRALLLKASGWLAPGG 354

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +++S CS+   + E  VQ + + +     L P               + +G IR+ PD 
Sbjct: 355 ELIYSTCSIFSAEGEGQVQWLSKQNNN---LAPQKIDPTLLGLYEFMANNDGQIRLRPDY 411

Query: 420 LEKIDGVSSGMDGFFAVAL 438
                    GMDGFF    
Sbjct: 412 FAD----QGGMDGFFVAKF 426


>gi|291166482|gb|EFE28528.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis
           ATCC 35896]
          Length = 440

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 191/457 (41%), Gaps = 43/457 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   +  V  K +     +           L  RD++    +V  TL  +  +D V
Sbjct: 4   VRKLAYDSVYAVKYKGVYSNLYISQSIKKYR---LIDRDRVFYTELVYGTLENIKFLDYV 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +D      + +    +  +L VS+ QI Y+D V ++AVV+  V  AK    N      VN
Sbjct: 61  IDKFSNVKVDKLSKEVLTILEVSLYQIHYMDGVQNFAVVNEMVNLAKVVWHNARIPSFVN 120

Query: 126 SILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            ILR + R              R++    + EW  E L N Y  E+   I  A      I
Sbjct: 121 GILRNILRNPNAFDILLPPGKKRLSIEYSVSEWISELLINQYSLEKAEDILYALSQHPAI 180

Query: 179 DLTVKFDI---ETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDAS 229
            L V  +    +    KL ++ + T        I   +    I     F +G + +QD S
Sbjct: 181 YLRVNMNKVTTDRLKEKLCSLGVDTEKVVGFDNILQTKHFNGIEKNEYFLKGYFTIQDIS 240

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           +   ++         +LD+CAAPGGKT    ++I     V + D    +L  +  +  RL
Sbjct: 241 SVCCIKALSPKTGEKILDICAAPGGKTTAIAEIIGEKGIVFSNDKGVNKLNLISQSAKRL 300

Query: 287 HLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            L   ++ ++DA ++    K++FD VLVD PCS  G IRR P++ + +   +       Q
Sbjct: 301 CLDNIELSDIDACEFQENWKEMFDRVLVDVPCSGLGVIRRKPEIRY-KQGVEFKSLYPIQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +K+L     +VK  GI+++S C+L++++++EV+   L +         +     +     
Sbjct: 360 KKILDNASQYVKKDGILIYSTCTLNREENQEVIHHFLSTHTNFTLDDMIIPTLGQVY--- 416

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 G + + PD            DGFF   L+R+
Sbjct: 417 ------GMVELLPD--------EGQWDGFFISKLKRI 439


>gi|319939671|ref|ZP_08014030.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           anginosus 1_2_62CV]
 gi|319811260|gb|EFW07566.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           anginosus 1_2_62CV]
          Length = 437

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 120/451 (26%), Positives = 194/451 (43%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +   V  +       L+    +     LS  D+ LV  IV  T+     ++  
Sbjct: 8   ARQTALAVFEAVFSEGAYSNIALNQTLLEVP---LSSADKGLVTEIVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  V+ +   +    L  LL +S+ QI YLD +  +AVV+ AVE AK  K  +   K VN
Sbjct: 65  LSHVIENR-DKLDSWLYILLLMSLYQIQYLDKIPAHAVVNEAVELAKARK--KGSEKFVN 121

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LRR                +R +    +P W  + L   YG++R LAI ++    +  
Sbjct: 122 AVLRRLLRDGVADIGSIKRKNKRYSIQYSLPVWLVKVLIEEYGEKRALAIFESLFLRNKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +      E     L A         L +          F EG   +QD S+ +    
Sbjct: 182 SVRVVDLSRKEELKQLLQAEDSLLAPSALVKSHGHFAGHALFEEGAITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  VLD C+APGGKT  +   ++  +VTALD+ + +L  ++ N  RL +      
Sbjct: 242 LELRGDEKVLDACSAPGGKTMHIASYLTTGQVTALDLYEHKLALIKENAQRLGVADKVIT 301

Query: 294 IEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q ++L  
Sbjct: 302 KKLDARKVFETFGADAFDKILVDAPCSGIGLIRRKPDIKYNKENADFASLQKIQLEILDS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  Q++ +VV++ L + P        N    K       +  +
Sbjct: 362 VCQSLRKGGIITYSTCTIVSQENFQVVEQFLAAHP--------NFKQVKLEHNRQDILKD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I ITP++         G DGFF    +R+
Sbjct: 414 GCILITPELY--------GSDGFFISQFKRI 436


>gi|302381615|ref|YP_003817438.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192243|gb|ADK99814.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 463

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 158/439 (35%), Positives = 230/439 (52%), Gaps = 19/439 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+ AR+ +  LL+  + +R  L   + L     A   L   D+   RA+    LR L  I
Sbjct: 43  GVEARIAAGILLNAALERRNGLDEAMSL----PAVAALPGPDRAFARAVAMAALRRLGEI 98

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D +L+  L  S P    +++ LLR+S+AQ L L    +A V  AV+ A+RD + R +  L
Sbjct: 99  DHILNQRLQKSPPE---AVRTLLRISLAQTLVLGTPAFAAVSTAVKLAERDAKTRPYKAL 155

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           VN++LR V RE   L       S +P+W   R    YG   + AI+ A       DL++K
Sbjct: 156 VNAVLRGVEREGPGLTTA---ESNLPDWIAARWRQAYGPATLAAIALAAREEPPTDLSLK 212

Query: 184 FDIETWAHKLNAVMLP-TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
              +  A           GG     +   + + PG+  G WW+QDA+A+IP ++      
Sbjct: 213 PGEDAAALAEALEATVLPGGTVRSGVRGDVSAWPGYDAGGWWIQDAAAAIPARMLAPKAG 272

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            + LD+CAAPGGKT QL  SGA V ALD S+ RL +LR NL+R  L   +I+   A D+ 
Sbjct: 273 ETALDMCAAPGGKTLQLAASGASVVALDRSEARLRRLRQNLERTGLS-VEIVVTAAEDWD 331

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FDAVL+DAPC++TGT+RR+P+VL      ++ K A  Q +LL      V PGG +V
Sbjct: 332 DPRTFDAVLLDAPCTATGTLRRNPEVLRATKPAEVAKLADVQHRLLDAAALRVAPGGRLV 391

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CSL++++ E  V   LR +P     VP + A   +   A AL+PEGW+R+ P     
Sbjct: 392 YCVCSLEREEGETQVIAFLRRNP-DFRTVPADVAAVGAP--AEALTPEGWLRVLPSYW-- 446

Query: 423 IDGVSSGMDGFFAVALRRL 441
                 G+DGFF   L+R+
Sbjct: 447 --PEQGGLDGFFIAGLQRV 463


>gi|322412409|gb|EFY03317.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 440

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 114/450 (25%), Positives = 204/450 (45%), Gaps = 36/450 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L  +  +       L+ +  + AF   S +D+ L+  IV  T+     ++  L
Sbjct: 10  RGKALLTLENIFDQGAYTNIALNQQLSNKAF---SAKDRALLTEIVYGTVSRKISLEWYL 66

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +     +    +  LL +S+ Q++YLD    +A+V+ AV  AK     +   K VN+
Sbjct: 67  AHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 125

Query: 127 ILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLY 177
           ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S   
Sbjct: 126 ILRQFTSHPLPDMGTIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKAS 185

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           I +T    +E  A  L+A         L +      +   FA G   +QD S+ +     
Sbjct: 186 IRVTDPLKLENIAEDLDAERSLLSATGLTKASGHFAASDYFANGDITIQDESSQLVAPTL 245

Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
                  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N DRL +    +  
Sbjct: 246 SIDGEDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENADRLGVADNIETR 305

Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L   
Sbjct: 306 KLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSV 365

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +G
Sbjct: 366 CQTLRKGGIITYSTCTIFDEENRQVIEGFLQSHP--------NFEQVKLNHTQADIVKDG 417

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ ITP+  +         DGFF   +RR+
Sbjct: 418 YLIITPEQYQ--------TDGFFIGQVRRV 439


>gi|42519411|ref|NP_965341.1| SUN protein [Lactobacillus johnsonii NCC 533]
 gi|41583699|gb|AAS09307.1| SUN protein [Lactobacillus johnsonii NCC 533]
          Length = 438

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 194/457 (42%), Gaps = 45/457 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+   L  V  ++      L+ E        L   D+ L   IV  T+++   ++ 
Sbjct: 3   NARTVALETLIKVFNQKSYSNIALNNELIKH---DLKPADKALATRIVYGTIQYKIFLEY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123
            L  ++ + L      L+ LL +S  Q  +L+ V   A+ D A + AK+  K N    KL
Sbjct: 60  QLKPLIKTKLR--DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKKYSKRNSGSYKL 117

Query: 124 VNSILRRVSREKIELLQRIAGISI------IPEWFKERLENFYGKERVLAISDACISPLY 177
           +N ILR + R+   L      +         P+W  E L + +G+ +   I      P  
Sbjct: 118 INGILRALERQGEILPPTNDLVEYLSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAA 177

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + +     D E    +L                L      +     F  G   +QDA+
Sbjct: 178 NSIRMTTKESDFEEIKEELKKDNFSFEESSLTPHNLNLNKGGVAQTALFKNGKITIQDAA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287
           AS+ V  F    +  VLD C+APGGKT Q+  +     V ALD+ + +L  +R   +RLH
Sbjct: 238 ASLAVDAFYFKGSEQVLDACSAPGGKTVQIAENLTTGSVIALDIHENKLRLVRNAAERLH 297

Query: 288 LYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +        +DA     Y  +  FD +LVDAPCS  G IRR P++ + +  +DI   A  
Sbjct: 298 VSDKVRTKALDARKAKEYFNQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKI 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      +  GG +V+S C++  ++ E VV++ L+  P   EL+P+          
Sbjct: 358 QLAILESVSGLLANGGELVYSTCTISYEEDEGVVKQFLKLHP-DFELIPVQVGKLP---- 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  +RI P         S G DGFF   L++
Sbjct: 413 -----KQEMVRIFPS--------SDGSDGFFIAKLKK 436


>gi|295407155|ref|ZP_06816956.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
           B [Staphylococcus aureus A8819]
 gi|294968008|gb|EFG44036.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
           B [Staphylococcus aureus A8819]
          Length = 428

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/449 (22%), Positives = 184/449 (40%), Gaps = 44/449 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   +  ++ +       ++    ++    L+  D+ L   IV  T++    +D 
Sbjct: 4   NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + + +      ++QLL +S+ Q +YLD V ++A+++ AVE AK  +   H   +V
Sbjct: 61  YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116

Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           N ILR + R  +           R+A    +P+W  +     YG E    I  + +    
Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176

Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +         +    KL                L    + I+    F +G   +QD S
Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           +     +     +  VLD C+APGGK   +    +   +V A D+   +++ +  N+ +L
Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            L      + DA     K  +D +LVDAPCS  G +R  P++ +T+    I      Q +
Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + VK GG +++S C++++ ++E V+   L+++    E  P        +     
Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
                 ++I P             DGFF 
Sbjct: 411 ----KTLQIMPQDF--------NSDGFFI 427


>gi|160872609|ref|ZP_02062741.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
           grylli]
 gi|159121408|gb|EDP46746.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
           grylli]
          Length = 442

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 221/456 (48%), Gaps = 40/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R +++H++S  ++K+I+L  +L  E        +  RD+  ++ +    +R+   +  
Sbjct: 3   NTRRIAAHIISRFLKKKIALNTILFAEV----PSGIDVRDRAFIQELCYGVIRWYFPLKK 58

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  F+L  SL R    +  L+ V + Q+ YL+++ +A V   V+ AK  ++ R  A L+N
Sbjct: 59  LSSFLLKKSLNRSDQDIYALVLVGLYQLNYLNISPHAAVYETVQAAKELRK-RWAAPLIN 117

Query: 126 SILRRVSREKIELLQRIAGISI--IPEWFKERLENFYGKERVLAIS-DACISPLYIDLTV 182
            +LR   R+K  LL++++ I+    P+W  ++L++ +       +  +  ++ + + +  
Sbjct: 118 GVLRSFQRQKTGLLKKVSQITHLAHPDWLIKKLQHAWPNAWRSILDANNHLASMSLRVNQ 177

Query: 183 -KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            +   E++  KLN   +       +    + +    +  LPGF  G   +Q+ SA +   
Sbjct: 178 LEITRESYLQKLNNNNINATLSELSQSGIILDTSFPVDKLPGFRTGEISIQNISAQLSAS 237

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L    +   VLD CAAPGGKT  ++ +        A+D    RL +L+ NL RL L  + 
Sbjct: 238 LLLLEDGQHVLDACAAPGGKTTHILETQPELACCVAVDADVVRLTRLKDNLKRLKLTEKK 297

Query: 293 II-----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           I        D   +   ++FD +L+D+PCS TG IR+HPD+   R   D+++ A  Q +L
Sbjct: 298 IQLFPMKVQDFKIFWKGRMFDRILLDSPCSGTGVIRKHPDIKLLRREKDVIQLADQQYQL 357

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGGI+++  CS+  +++  V+++ L       E V         I     L
Sbjct: 358 LSSLWGLLKPGGILLYVTCSVLPEENANVLKRFLTHHFDAREEV---------IRETWGL 408

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +     +I P++         G DGF+   LR+L++
Sbjct: 409 ACPIGRQILPEI--------HGADGFYYARLRKLMR 436


>gi|114799841|ref|YP_762041.1| putative ribosomal RNA small subunit methyltransferase B
           [Hyphomonas neptunium ATCC 15444]
 gi|114740015|gb|ABI78140.1| putative ribosomal RNA small subunit methyltransferase B
           [Hyphomonas neptunium ATCC 15444]
          Length = 423

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 148/443 (33%), Positives = 219/443 (49%), Gaps = 28/443 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           SG   RL +  LL+ V+ K+ +L   L     D A+  L   D+   RAI +  LR L  
Sbjct: 2   SGAPIRLAAGRLLNLVLDKKRTLDDALAT---DDAYNNLDGSDRAFARAIASSALRHLGW 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ID  +   L   L      ++ L+R   AQI ++DV  +A V   VE A+     R    
Sbjct: 59  IDRGVSPFLSRPLSATGAEIRALIRAGAAQIWFMDVPHHAAVSETVEAARLWSPARSGGG 118

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            +N+ LRRV+         I+ +++ P+W   RL + YG+E   A++ + +    + L+ 
Sbjct: 119 FLNAALRRVTES-ESPAATISPLALWPDWLASRLGSAYGREAAEALALSQLEEPSLHLSP 177

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           K D    A      +LP G   +  +  ++ +LPG+A G WWVQDA+A IP QL      
Sbjct: 178 KGDGARVAEATGGTLLPDG--AIDIVSGAVETLPGYAAGDWWVQDAAARIPAQLLSPQTG 235

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             +LDLCAAPGGKT QL  +GA VTALD S+ RLE+L+ NL R  L+AE II  D   + 
Sbjct: 236 ERILDLCAAPGGKTLQLAAAGADVTALDRSRPRLERLKENLARTGLHAEVII-ADGEAWA 294

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P  LF  +L+DAPCS+ GT+RRHP+  W +  DD+ +    Q +LL      + PGG +V
Sbjct: 295 PPALFPKILLDAPCSALGTLRRHPESAWIKTEDDVARFPGVQARLLAAAAGMLAPGGTLV 354

Query: 363 FSNCSLDKQDSEEVVQK-----VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           +  C+    +  ++V+      +L  SP+  E +P             AL+P G +   P
Sbjct: 355 YCVCTPVPAEGVDIVEAAIGKGILTRSPVKAEEIP---------GFEAALTPAGDVLTLP 405

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        D F+   L +
Sbjct: 406 GTG-------GKHDAFYIARLIK 421


>gi|83855202|ref|ZP_00948732.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sulfitobacter sp. NAS-14.1]
 gi|83843045|gb|EAP82212.1| ribosomal RNA small subunit methyltransferase B, putative
           [Sulfitobacter sp. NAS-14.1]
          Length = 406

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 137/415 (33%), Positives = 214/415 (51%), Gaps = 16/415 (3%)

Query: 26  TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQL 85
             L+       A   L   D+   + +   TLR + R D +L   L    P    +++  
Sbjct: 6   ERLMSELLSAGALDKLPPDDRARAQRLAMDTLRGMERADRLLQKHLSKYPP---LTVRNA 62

Query: 86  LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI 145
           LRV   ++     A + VV+  VE     K+  H   L N++LR+++ E  E    +   
Sbjct: 63  LRVGTVELCQGG-AAHGVVNAMVELVATHKKLGHLKGLTNAVLRKIAAEGPEAWAAL-RA 120

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+W +  L   +G + +  I  A  +   +DLT K D E  A  +   +LPTG +R+
Sbjct: 121 PRLPKWLRGPLTEAWGPDAMTGIEAAHFAGAPLDLTAKRDPEGLAAAVGGTVLPTGSVRV 180

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK 265
            +    + ++PGFAEG WWVQDA+A++PV++       +VLDLCAAPGGKT QL  +GA+
Sbjct: 181 ADA-GQVTTMPGFAEGDWWVQDAAAALPVKILAPQKGEAVLDLCAAPGGKTMQLAAAGAQ 239

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325
           VTA+D SK+R++++R NL R+HL A+ ++         +  FDA+L+DAPCS+TGTIRRH
Sbjct: 240 VTAVDNSKQRMQRVRENLARVHLPAKVVVV---DARRFEGTFDAILLDAPCSATGTIRRH 296

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           PD+   +D  +       Q +++    S + PGG ++F  CSL   + E  V + L    
Sbjct: 297 PDLPHAKDGSEFGDLIELQSEMIDHAWSLLNPGGRLIFCTCSLLPDEGEVQVDEALERHA 356

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                V  ++     +D A   + EG +R+ PD          GMDGF+   LR+
Sbjct: 357 DM--RVDRDALAVPGVDPAWT-TQEGGLRLRPDYW----PELGGMDGFYIACLRK 404


>gi|114767262|ref|ZP_01446112.1| ribosomal RNA small subunit methyltransferase B, putative
           [Pelagibaca bermudensis HTCC2601]
 gi|114540615|gb|EAU43687.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseovarius sp. HTCC2601]
          Length = 420

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 222/440 (50%), Gaps = 22/440 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  S  LL  V+ +      LL      SA+  +   D+   + +    LR L
Sbjct: 1   MPPIPTARAQSVALLGQVLGQGR----LLSDAMTGSAWEAMPAPDRAAAQRMAQEVLRNL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R D +L   L  S P     ++ +LR+   ++     A + VV+  V+    D++ +  
Sbjct: 57  ERCDRLLKPHLRKSPP---LFVRNVLRLGAWELA-TGGAAHGVVNDCVQIVAGDRKTQSM 112

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN++LR+++ E       +  +  +P W +E L   +G + V A+  A ++   +DL
Sbjct: 113 KGLVNAVLRKLTEEAPAKWSTL-RVPRLPRWLREPLTIAWGNKAVAAMEAAHLAGAPLDL 171

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           + K D    A  +   +LPTG +RL      + +LPG+  G WWVQDA+A++P +L G +
Sbjct: 172 SAKADAAALAAAVGGSLLPTGSVRLA-SAGQVSALPGYDTGDWWVQDAAAALPARLLGDV 230

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
             L++LD+CAAPGGKT QL  +GA VTALD+S+ R+ ++R NL R  L A  +       
Sbjct: 231 TGLNILDMCAAPGGKTMQLAAAGANVTALDLSEARMGRVRENLARTGLEAATVT---GDA 287

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 +DA+L+DAPCS+TGTIRRHPD+   +  + I +    Q  ++   +  + PGG 
Sbjct: 288 LAHDGTYDAILLDAPCSATGTIRRHPDLPQAKQGEGISELIGLQAAMIDHALRLLAPGGR 347

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +VF  CSL   + E  V++ L   P    L P  +   ++       S EG +R+ PD  
Sbjct: 348 LVFCTCSLIPDEGECQVEEALARHPGLEVLRPEAAGVEEA-----WRSEEGGLRLRPDFW 402

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +      GMDGF+   LR+
Sbjct: 403 AE----RGGMDGFYVAILRK 418


>gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 418

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 193/442 (43%), Gaps = 38/442 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++  L  V+         L          L +  ++  ++ +V  +LR L RIDA LD
Sbjct: 6   KIAADALEDVLAG-----AALHQVLPAGQRLLTTPGERGALQDLVYGSLRQLGRIDAWLD 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +L   L      L+ LLR+++ Q+ Y     +A+V  AV  A           ++ +  
Sbjct: 61  ALLERPLT--DPHLESLLRIALYQMAYTRAPAHAIVHNAVSAAGGGWRRGLANAVLRNFQ 118

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKF-DI 186
           RR +        +       PEW+ E+L   Y +     ++ + + P + + ++ +  D+
Sbjct: 119 RRRAELDALAEAKPGARWSHPEWWIEKLRAAYPERWQAILAASLLHPPFTLRVSSRHGDV 178

Query: 187 ETWAHKLNAVMLPTGGIRLK----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
            ++  +LN   LP      +    E    +  LPGFAEG   VQDA A    +L G    
Sbjct: 179 ASYLAELNEAGLPAHRSGQQAVTLEKAVPVQLLPGFAEGRVSVQDAGAQHAARLLGAKPG 238

Query: 243 LSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAF 299
             VLD CAAPGGKT  ++  +   + ALDV   RL +++ NLDRL L+A  +        
Sbjct: 239 ERVLDACAAPGGKTGHILELADVDLVALDVDAARLARVQENLDRLRLHATLVEGDAARPE 298

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   + FD +L D PCS++G +RR+PD+ W R   DI + A  Q  ++      ++PGG
Sbjct: 299 AWWDGRPFDRILADVPCSASGVVRRNPDIKWLRRPGDIAQFAAQQAVIVEALWRLLRPGG 358

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            ++++ CS+  +++E  VQ  L       E   L                     + PD 
Sbjct: 359 TLLYATCSIFHEENEGQVQAFLARHVQDAERCSLPEPLSDGS-------------LLPDA 405

Query: 420 LEKIDGVSSGMDGFFAVALRRL 441
                      DGFF   LR++
Sbjct: 406 E---------HDGFFYALLRKI 418


>gi|315038633|ref|YP_004032201.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|312276766|gb|ADQ59406.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|327183838|gb|AEA32285.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL 1118]
          Length = 442

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 111/461 (24%), Positives = 195/461 (42%), Gaps = 44/461 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  +AR +S   L  V++ +      L+     S    LSQ DQ L   IV  T+++ 
Sbjct: 1   MSTSKSARAISLETLIKVLQDKSYSNISLNNSLNHS---DLSQADQNLATKIVYGTIQYR 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L  ++   L  K   L+ LL +S+ QI++LD V + AV+D A + AK+  ++  
Sbjct: 58  LFLEYQLKGLVRIKLTEK--YLKPLLLMSIYQIVFLDKVPNRAVLDEANKLAKQFGKHHS 115

Query: 120 FAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
               V + + R    +        + ++ ++    +PEW      N +G +R   + ++ 
Sbjct: 116 SGYRVVNGILRSFIRRGVILPDAKDEIKYLSVKESMPEWLVNYFANHWGMDRTKKLLESI 175

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWV 225
             P    + ++   D +   ++L                +      +     F  G   +
Sbjct: 176 NQPAKNSVRISALCDRDQVFNQLKTEGYEPEWSNLSVNDIILGHGGVSQSDLFKRGKLTI 235

Query: 226 QDAS-ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCN 282
           QD + + +            +LD C+APGGKT Q+        VTALD+ +++L  ++ N
Sbjct: 236 QDEAASLVIESFDFDSKEEHILDACSAPGGKTVQMAERVVVGDVTALDIHEKKLHLVKEN 295

Query: 283 LDRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             R+++     I   DA           F  +LVDAPCS  G +RR P++ +T+   D+ 
Sbjct: 296 AKRMNVANKVKIKACDARKVQDVFKPGEFTKILVDAPCSGLGLLRRKPEIRYTKTERDLQ 355

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q  +L      +K  G +V+S CS+  ++ E VV+K L+  P   EL P   +  
Sbjct: 356 NLQKIQLAILESVSPLLKEDGELVYSTCSISVEEDEAVVEKFLKLHP-DFELKPFKLSKL 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +        S  G ++I PD            DGFF    +
Sbjct: 415 E--------SKTGMLKIMPD--------QDNNDGFFIAKFK 439


>gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101]
          Length = 454

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 181/469 (38%), Gaps = 63/469 (13%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R ++  +L  V          L+ E G +    LS  D+ L   +    +R    
Sbjct: 14  KGLAPRRLAWQVLQAV-AAGAYADGALERELGRT---SLSPADRGLATELAYGAIRQRRL 69

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +DA LD +      R+   L+ LL + + Q+L  D V   A V   VE AKR       A
Sbjct: 70  LDAWLDQLGKVPAERQPPKLRWLLHIGLYQLLASDRVPPSAAVSTTVELAKR-GGLARLA 128

Query: 122 KLVNSILRRVSREKIELLQRI-------------AGISIIPEWFKERLENFYGKERVLAI 168
            + N +LR   R +                         +P W    L  +   ER  A 
Sbjct: 129 PVANGMLRAFLRRREAGDTLPLTPEQAGDPATALGVRQSLPPWLAAELLGWVPPERAEAF 188

Query: 169 SDACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGF 218
             AC +P  +DL V     T A           +   +     GI L+     +  LPGF
Sbjct: 189 GLACNTPPSLDLRVNRLRSTPAEVCAALAAAGVEALPIEGLPAGITLQGRSGDLSRLPGF 248

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRR 275
            EG W VQD +A     L        +LD CAAPGGK+      +     V ALD  + R
Sbjct: 249 GEGHWCVQDRAAQRIAPLLDPQPGERILDACAAPGGKSTHLAEWMGDQGMVLALDRGEAR 308

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLW 330
           L ++  N +RL L +  +   DA     ++      FD +LVDAPCS  GT+ RH D  W
Sbjct: 309 LRRVSRNAERLGLRSIAVQHGDATALAQEQPELQGSFDRILVDAPCSGLGTLARHADARW 368

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
             D   I +    QR+LL   +  +KP G +V++ C++   ++  ++   +   P     
Sbjct: 369 RIDPAAIGELVVLQRQLLEGLLPLLKPKGRMVYATCTVHPSENSALIDAFVADHP----- 423

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                          AL  +   ++ P  L          DGF+A  L 
Sbjct: 424 ---------------ALQVQQSWQLWPGELAGAG------DGFYAAVLE 451


>gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           parainfluenzae T3T1]
          Length = 445

 Score =  234 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 208/456 (45%), Gaps = 41/456 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            + ++ R +++ ++  V+ +  SL+ LL           +  +D  L++ I     R LP
Sbjct: 11  STALSVRAIAAQVILQVLDQGKSLSTLLPEV-----QSQVKPQDLPLLQEITFGICRVLP 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R++ ++  +L   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F 
Sbjct: 66  RLENIIKKLLDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFR 124

Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN +LRR  RE+ ++  +      ++ PEWF  +L+  Y   R +  ++    P+++ 
Sbjct: 125 GLVNGVLRRFLREQEDILAVVDKHWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLR 184

Query: 180 LTVKFDI----ETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIP 233
           +  + +      T   +               L +   +  LP F +G   VQD +A   
Sbjct: 185 VNQQQNNTKTYSTLLEEQEIAAFECDNPHALRLAQPLSVSKLPNFEQGAVTVQDLNAQWS 244

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAE 291
             L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL RL+  A 
Sbjct: 245 ALLLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLTRLNQQAT 304

Query: 292 DIIEMDAFDYCP-------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +                    FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 305 VVCGDATEPEKWLSEIGLNGASFDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQ 364

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L    + +KP GI++++ CS+   ++ + +Q +L  +    EL+PL     ++    
Sbjct: 365 GQILKALWAKLKPNGILLYATCSVLPDENSQQIQHLLAET-SDAELMPLPFEQTENTI-- 421

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I+  P          +G DGF+   LR+
Sbjct: 422 -------GIQFLPQ--------ENGGDGFYYAKLRK 442


>gi|332991527|gb|AEF01582.1| 16S rRNA methyltransferase B [Alteromonas sp. SN2]
          Length = 444

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 198/465 (42%), Gaps = 50/465 (10%)

Query: 1   MKSG-----MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           MK        N R   + ++  ++ +  S    L+             RD   ++ +   
Sbjct: 1   MKPTPLPKQKNLRADCAWVIYQILEQGKSSRDCLERVQRRHH-----PRDNAWIQEMSLG 55

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R LP +   L  +L   L   K  ++ L+ + + Q+ +  V+ +A V   V  A    
Sbjct: 56  VMRKLPILQHWLRELLDRPLKGNKKVIEHLILLGLYQLAFSRVSQHAAVGETVN-ASPYL 114

Query: 116 ENRHFAKLVNSILRRVSREK--IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
                  LVN++LR   R++   + +      S +P+W  + LE+ YG++   A+ +A  
Sbjct: 115 GGTALKGLVNAVLRNFMRQELVNKPIDNPIIASGLPKWLYKALEDAYGQD-ADAVREATN 173

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWW 224
           +   I L V      I  +A  L+AV +              E  E I  LPGF +G + 
Sbjct: 174 AMAPIWLRVNTKQISITDYAAALDAVEINYSLSSEHADAIRLEGREDITGLPGFEKGHFA 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRC 281
           VQD +A +         +  VLD CAAPGGKT  +I    +     ALD  + RL+++  
Sbjct: 234 VQDGAAQLAAHYLDAQPHERVLDCCAAPGGKTGHIIERTPELAYCLALDADENRLKRVEE 293

Query: 282 NLDRLHLYAEDIIE------MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           N+ RL     ++             +   + FD +L+DAPCS+TG IRRHPD+ W R + 
Sbjct: 294 NMTRLQHTQTNLPVIKQGDAAKPETWWDGQHFDRILLDAPCSATGVIRRHPDIRWLRKSS 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           DI   A  Q ++L      +KPGG ++++ CS+  Q++ + +   L  +     LVP+  
Sbjct: 354 DIDALAALQAEILTSLWQTLKPGGTLLYATCSILPQENSQQISAFLERN-ADATLVPVIK 412

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               S             +I P   +        MDGF+   L +
Sbjct: 413 TETPSKP---------GRQILPGEQQ--------MDGFYYARLVK 440


>gi|227534879|ref|ZP_03964928.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187635|gb|EEI67702.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 446

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 186/465 (40%), Gaps = 46/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N RL++   LS V  +       LD          L+ RD  L+  IV   ++  
Sbjct: 1   MTPN-NPRLLAVETLSRVTGQGGYSNLTLDHVINSHK---LTPRDAGLLTNIVYGVIQHQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   +     +    ++ LL  +V Q+ YLD V   AV   + E AK+   ++ 
Sbjct: 57  LTLDFYLAPFIKG--RKLDNWIRCLLDTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172
            AK V  +LR   R        IA         S  P W  E+L    G+ +  AI +  
Sbjct: 114 IAKFVTGVLRNAQRTGFPDPAAIADPVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVI 173

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224
             P +  L V     T A  L ++              I L      +     F +G + 
Sbjct: 174 NVPAHASLRVNTTKITPAALLASLKPEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT  +        G +VTALD+   ++  +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293

Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  RL L        +DA       P   FD +LVDAPCS  G IRR P++ +T+  +
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATTFPANSFDKILVDAPCSGLGLIRRKPEIKYTKTPE 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D       Q  +L      +K GG + +S C++ K+++++VV + L + P   ++     
Sbjct: 354 DPAHLQQIQLAILNSVAPTLKIGGRLTYSTCTMVKEENQDVVAQFLAAHPEFEQVSVPTL 413

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   A A      +++ PD  +         DGFF  +L R
Sbjct: 414 KPLHKAHNAPA------LQLFPDDYD--------TDGFFIASLIR 444


>gi|297570244|ref|YP_003691588.1| sun protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926159|gb|ADH86969.1| sun protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 501

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 134/493 (27%), Positives = 201/493 (40%), Gaps = 72/493 (14%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R V+  +L    ++   L  +L      +      +RD+ LVRA+V   LR    +
Sbjct: 15  GLRPRQVALEILLQQEQQNRPLDQVLAEY--PARRWPSDRRDRQLVRALVYEVLRRRGFL 72

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAK 122
           D V+       L + K      LR+ +AQ+LY D     A +D  +   K  ++ R    
Sbjct: 73  DHVVARYAKHPLAKMKPLTLAALRLGLAQLLYFDRLPPAAAIDETIRALKAARQPRWITG 132

Query: 123 LVNSILRRVSREKIELLQRIAGISII---PEWFKERLENFYGKERVLAISDACISPLYID 179
            VN +LR  +RE+ ELL+  A        P W ++R E   G+ER    S A   P  + 
Sbjct: 133 FVNGLLRNAARERAELLRLAAEQCDWLSVPAWLRQRREQQLGQERAYHRSRAENQPPPLV 192

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDAS 229
           L V     +  T A +L    +            RL      +  LPGF EG + VQD +
Sbjct: 193 LRVNTAKINCATLAEQLQHNGIEVEESTFAPAALRLPSYHGRVEELPGFNEGWFAVQDEA 252

Query: 230 ASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCN 282
           A +                 LD CA  GGKTA L     + +++ AL+    R   L  N
Sbjct: 253 AQLVTMLLQKEPDPEPGALFLDACAGLGGKTAHLAELLPAESRLVALEPHTGRFALLAEN 312

Query: 283 LDRLHLY-----------------------------------AEDIIEMDAFDYCPKKLF 307
           L RL                                      A     +D+    P    
Sbjct: 313 LARLGHKFFKLPPDGPPEELARRLQTAAAGKPAPLLLCPQTLASFARLLDSASVAPAFQG 372

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
             +L+DAPCS  G +RRHPD+ W R  +D+ +    Q  LL Q    + PGG++V++ CS
Sbjct: 373 --ILLDAPCSGLGVVRRHPDIRWNRQPEDLPRYCKQQIALLDQAAKLLAPGGVLVYAVCS 430

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
            + +++ EV+Q +    P   EL   +   W     A  +  EG++R TP          
Sbjct: 431 NEPEENREVIQALTSRHP---ELEVTDPRPWLPPPAATLVDDEGYLRSTP---------E 478

Query: 428 SGMDGFFAVALRR 440
           +G+DGFFA  L+R
Sbjct: 479 TGLDGFFAARLQR 491


>gi|227515682|ref|ZP_03945731.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
           ATCC 14931]
 gi|227085930|gb|EEI21242.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
           ATCC 14931]
          Length = 448

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 195/466 (41%), Gaps = 44/466 (9%)

Query: 1   MKSGMN----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M         AR ++   L  V          L+          LS  D+ LV A+V  T
Sbjct: 1   MTKKQAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ---LSGADRRLVTALVYGT 57

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
           L+    +D  L   +     + +  ++ LL +++ Q  YLD V ++A  D A+E AKR  
Sbjct: 58  LQHQRTLDYWLSPFIAG--KKVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRG 115

Query: 116 EN---RHFAKLVNSILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
                R    ++++ILR       +  +  QR+A  + +P+W  + L   YG  +  A++
Sbjct: 116 NPGVRRFVTGVLHAILRNGVADVEKIEDPKQRLAIQASLPDWLVDELVAQYGLAQTEALA 175

Query: 170 DACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEG 221
                P  I L V     T            +           L     +++    F  G
Sbjct: 176 KVINEPARISLRVNRAKATVEEAQALLRSAGVETKPSEVAQNGLVVTKGAVLKTAAFKNG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKL 279
           V  +QD SA + V+      +  VLD CAAPGGKT Q+    +  +V ALD+ + ++  +
Sbjct: 236 VVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAEALTDGEVYALDIHRHKVGLI 295

Query: 280 RCNLDRLHLYA-EDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  R+ +       ++DA     +   + FD +LVDAPCS  G +RR P++ + +   
Sbjct: 296 EKNAQRMGVDNRVFARQLDARQVGQEFADQFFDQILVDAPCSGMGLLRRKPEIRYDKQLG 355

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D  +    Q  +L    + VK GGI+ +S C++ +Q+++E V + L+  P         +
Sbjct: 356 DSQRLHQIQGAILDSVATKVKKGGIITYSTCTILRQENDETVAEFLKHHPNFRLQKTTTA 415

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    A  L+      + P           G DGFF   L+R+
Sbjct: 416 RMLEDNRQAQTLT------LLPSDY--------GSDGFFISNLQRV 447


>gi|167760433|ref|ZP_02432560.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704]
 gi|167661932|gb|EDS06062.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704]
          Length = 436

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 94/463 (20%), Positives = 183/463 (39%), Gaps = 54/463 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M + +N R +   +L  + R        L        ++ L ++++  +  +VN TL  +
Sbjct: 1   MAASVNGRELVLDILLQITRDGEYSHIALKNVL--DKYQYLDKKERAFITRVVNGTLEHM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++      + + K  ++ ++R +V Q+ Y+D V D AV++ AV+ A + +    
Sbjct: 59  IEIDYIINQFSKVKVQKMKPVIRMIIRSAVYQLKYMDSVPDSAVLNEAVKLASK-RGFST 117

Query: 120 FAKLVNSILRRV--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
               VN +LR V           + + L  +     +P+W  ++    Y +E V  I++ 
Sbjct: 118 LKGFVNGVLRSVSRNLESVAYPSEEDRLAWMEIRYSLPQWILKQWLASYDEETVKRIAEE 177

Query: 172 CISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGV 222
            +    I +    +  T    L                         + +  L  F +G 
Sbjct: 178 FLKEKPITVRCNLEKITKEELLKLLKEEGVTVEEEPAVPYALYLSGYDHLAGLNSFRQGY 237

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
           + VQD S+    +      +  ++D+CAAPGGK   L         V A D+++ ++  +
Sbjct: 238 YQVQDISSMQVARWAAPKADDYIIDVCAAPGGKAIHLAEILAGTGHVEARDLTEYKVGLI 297

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           R N+ R  L+  + +  DA        K  D V+ D PCS  G + + PD+      +  
Sbjct: 298 RENILRSGLHNIEAVCKDATVRDEASIKKADIVIADLPCSGLGVLGKKPDLKSRMTEEMQ 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + A  QR +L     +VKPGG +++S C++ + ++EE  + +    P    +       
Sbjct: 358 KELASLQRSMLKVVKEYVKPGGKLLYSTCTISRDENEENARWLTEIDPKFRLI------- 410

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                  +++       DGF+    +R
Sbjct: 411 ---------------------RQKQMLPGRDPGDGFYIAMFQR 432


>gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8]
 gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 433

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 201/446 (45%), Gaps = 37/446 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R +++++L  V  +  SL+  L       A   L    +  ++AI   T R+  R++  L
Sbjct: 9   RAIAANVLLAVE-QGQSLSQCLP-----PALNQLPPEQRPQLQAICYGTCRWFHRLEGEL 62

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  L   L +    +  L+ V++ Q+ Y + A YAV++  VE A R  +  H   LVN +
Sbjct: 63  NQRLKKPLRKPDRIIHHLMLVALFQLRYSEQATYAVLNETVE-ACRALDKPHLTGLVNGV 121

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDLTV-KFD 185
           LR   RE     +  +G    P W  E+L + +    + +  ++   +P+ + +   +F 
Sbjct: 122 LRAAEREGAPEPKDDSGRFSHPAWMVEKLRHNWPGYWQTILEANNQQAPMTLRVNALRFK 181

Query: 186 IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            + +   L+   +     R          P  +  LP F +G   VQD +A +   L   
Sbjct: 182 RDEYLKLLSEAGIEAHATRFAPNGIQLERPVPVDRLPWFEDGAASVQDEAAQLCTTLLDL 241

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSG---AKVTALDVSKRRLEKLRCNLDRLHLYAE--DII 294
                VLD CAAPGGKT  ++ +     +V A+D S  RL +++ NLDRL L+A      
Sbjct: 242 QPGQRVLDACAAPGGKTCAILEACGALDEVVAIDESAERLPRVQENLDRLDLHATLTQAD 301

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
             D   +     FD +L+D PCS+TG IRRHPD+   R   DIV  A  Q  LL    S 
Sbjct: 302 AADIDSWWDGTPFDRILLDVPCSATGVIRRHPDIKLLRRESDIVPLASIQLGLLEAMWSI 361

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +KPGG +V++ CS+  Q++  ++Q+ L+           N A  K I+           +
Sbjct: 362 LKPGGRLVYATCSVFPQENHRIIQRFLKQ---------QNQATLKCIEADWGRDMNTGRQ 412

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + PD            DGFF   L +
Sbjct: 413 LFPD--------PDSHDGFFYAVLEK 430


>gi|94266030|ref|ZP_01289751.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
           MLMS-1]
 gi|93453425|gb|EAT03847.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
           MLMS-1]
          Length = 487

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 123/500 (24%), Positives = 189/500 (37%), Gaps = 76/500 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R V+  LL    +    +  LL+ +  +        RD+ L+ A+V   LR+ 
Sbjct: 1   MTPTANIRQVALQLLLAQEQSGQPVEQLLEHQLREHPLA--DGRDRRLLEALVYGVLRWR 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             +D V+       L + K      LR+ + Q+L L  +   A ++  ++  +  ++ R 
Sbjct: 59  GLLDQVVAGYARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQPRW 118

Query: 120 FAKLVNSILRR--------------------------VSREKIELLQRIAGISIIPEWFK 153
               VN++LR+                                 L   +A     P W +
Sbjct: 119 LTGFVNAVLRKAAADIERLGRQQYLAGLVAEGTAPTGQYASPDPLPMAVAAWLSHPPWLR 178

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN----------AVMLPTGGI 203
           +R E  YG E    +         + L V     T +  L           A       +
Sbjct: 179 QRWEQRYGLELCRELCHINNCLPPLVLRVNLHRLTASELLAQLQKAGIAATAGDYAPAAV 238

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--- 260
            L      +  LPG+A G + VQD +A +   L         LD CA  GGKTA L    
Sbjct: 239 VLPPGSGRVEDLPGYALGWFAVQDEAAQLVTMLLAGAGPGHYLDACAGLGGKTAHLAELL 298

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---------------------EMDAF 299
              A +TAL+   RR   L  NL RL + A  I                      + D  
Sbjct: 299 PPEATITALEPQSRRALLLTANLHRLGVTARLIQGELAAHLPAAELEAAGASHDKKGDTI 358

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  +  +LVDAPCS  G IRRHPD+ W R   ++      Q +LL      ++PGG
Sbjct: 359 PSPFLGFYRGILVDAPCSGLGVIRRHPDIRWNRRAAELKNYQRRQLELLSTAAELLQPGG 418

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           ++V+  CS + +++EEV+Q +L+  P     + L++        A  L    + R  P  
Sbjct: 419 VLVYVVCSFEPEENEEVIQLLLKRRPE----LRLSAPAPYLPVAARQLVRGDFFRSLP-- 472

Query: 420 LEKIDGVSSGMDGFFAVALR 439
                  S G+DGFFA  L 
Sbjct: 473 -------SDGLDGFFAARLV 485


>gi|330965124|gb|EGH65384.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 448

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 197/456 (43%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +           RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   L    L        +       P  + SLPGFAEG   VQD +A 
Sbjct: 174 RVNRRHHHRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NL+RL L
Sbjct: 234 LAADLLELSPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLERLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        D   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +
Sbjct: 294 EAELIAADARDTAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                          ++     G DGF+   L ++ 
Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|300781122|ref|ZP_07090976.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030]
 gi|300532829|gb|EFK53890.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030]
          Length = 486

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 105/459 (22%), Positives = 165/459 (35%), Gaps = 39/459 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G  AR  +   +  V  +      +L     +   +    RD      +   TLR L  +
Sbjct: 44  GDAAREAAFDAVLRVETEDAFGNLVLPQILRERKVKG---RDAAFATELAYGTLRTLGVL 100

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           DAV+       L     ++   LR+   Q+L   V D+A VD +V  A+   + +     
Sbjct: 101 DAVIAECSSRPLTELDPAVLTALRLGTYQLLMTRVDDHAAVDTSVRLAEAAGQGK-AKGF 159

Query: 124 VNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACI 173
           VN ILR V+R   +               A  +  PEW           E + A   A  
Sbjct: 160 VNGILRTVARTSAQEWMDKLAPSDEPSATAFRTAHPEWIARSFAQVLPAEELEAALKADS 219

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
               + L  +      E  A              +        SL    + +  VQD  +
Sbjct: 220 ERPKVHLVARPGEMSAEELALVTGGEEGRYSPYAVYLDGGDPGSLEPVRDRMAAVQDEGS 279

Query: 231 SIPVQLFGTLN-------NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCN 282
            +  +    +        +   LDLCA PGGK A +    A   A  D  +    +    
Sbjct: 280 QLIARAVTEVPVEADGGDHGRWLDLCAGPGGKAALMGSIAAIDGATVDAVEIGETRAELI 339

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
                     +   D  +   +  FD VLVDAPCS  G +RR P+  W +  DD+ +   
Sbjct: 340 RKSTEGLPVTVHVADGRNPGLEAGFDRVLVDAPCSGLGALRRRPEARWRKSEDDVAELNT 399

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL   ++  KPGG+VV+S CS D +++  +V K L      VE +       +  +
Sbjct: 400 LQEELLASAVNLAKPGGVVVYSTCSPDARETRGIVDKQLAK--GDVEELDAREFLSEMGE 457

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +   LS     ++ P           G D  F   LR++
Sbjct: 458 LGEHLSA----QMWPH--------RHGTDAMFLSVLRKM 484


>gi|330890235|gb|EGH22896.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. mori str.
           301020]
          Length = 448

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 125/456 (27%), Positives = 200/456 (43%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A++ K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCAEKLKKT-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   LN   L        +       P  + SLPGF EG   VQD +A 
Sbjct: 174 RVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFTEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L
Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDIV  A  Q +
Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                          ++     G DGF+   L ++ 
Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|268316481|ref|YP_003290200.1| sun protein [Rhodothermus marinus DSM 4252]
 gi|262334015|gb|ACY47812.1| sun protein [Rhodothermus marinus DSM 4252]
          Length = 453

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 183/460 (39%), Gaps = 42/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  LL  +   +  +  L+     D     L           V    R+   +D 
Sbjct: 13  PARREAVRLLERIENDQAYVNRLMSAGLTD----ELEPEAGRRATEYVAGVTRWRRWLDF 68

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L           +  L+Q+LR+ + ++L+ D   YA ++ AVE A+R    +  A +VN
Sbjct: 69  LLAQNYRGRYDSMEPRLRQILRLGLYELLFTDTPPYAALNEAVELARRLVRPQAGA-VVN 127

Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           ++LR + R++  L Q          A     P W  +R    YG     A+        +
Sbjct: 128 AVLRSLLRQRDFLPQPQTGDPVEDLAIRYSHPTWIVQRWLARYGPADTEALLRYNNERPW 187

Query: 178 IDLTVKFDIET---WAHKLNAVMLPTGGIRLKELPESIVSL-PGFAEGVWWV-----QDA 228
             + V+ D  +     H+L    L      + +    +  L P   + +        QD 
Sbjct: 188 FGVRVRTDRISRHVVLHRLADRGLEAEPSPVLDDFIRVQRLGPLLEDRLIEKGLLAVQDE 247

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA + V+L     + +++D CAAPGGKT      +    +V A DV  +R E +R    +
Sbjct: 248 SAGLAVRLLDPHPDETIVDACAAPGGKTTYIATRMRDHGRVLAFDVHPKRTELIRRAALQ 307

Query: 286 LHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             L +     +D      +      D VL+D PCS  G + +  D+ W R  +++ +   
Sbjct: 308 QGLTSIVAEALDLRQVSERYPELQADRVLLDVPCSGLGVLAKRADLRWHRRPEELDELVR 367

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL      ++PGGI+V+S C+++ +++E  V+  L   P              +  
Sbjct: 368 LQDELLEAAARLMRPGGILVYSTCTIEPEENEARVRAFLARHPEF------TVERADAWV 421

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            A  ++ EG+    P            MDG FA  LRR  
Sbjct: 422 PAEMVTDEGFFATWP--------PRDRMDGAFAARLRRTA 453


>gi|332522158|ref|ZP_08398410.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313422|gb|EGJ26407.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 440

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 115/459 (25%), Positives = 205/459 (44%), Gaps = 38/459 (8%)

Query: 1   MKSG--MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M +     AR  +   +  +          L+ +  +   + +  +D+ L+  IV  T+ 
Sbjct: 1   MANNWKTKARGKALLAIEDIFDNGAYSNIALNNQLSN---QSIQGKDKGLITEIVYGTIA 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
               ++  L   +     +    +  LL +S+ QILYL+ V  +A+V+ AV+ AK     
Sbjct: 58  KKITLEWYLSHYVE-DREKLDKWVYYLLMLSLYQILYLEKVPSHAIVNDAVDIAKNRGNK 116

Query: 118 RHFAKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           R   K +N+ILR++S              +R +    +P W  ++L   +G +R +AI +
Sbjct: 117 RGAEKYINAILRQISTGTLPSLDSIKRKNKRYSITYSVPTWLVKKLFEQFGDDRAIAIME 176

Query: 171 AC--ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           +    S   I +    D +   + L A   P     L +      S   F EG   +QD 
Sbjct: 177 SLSLHSKASIRVINPQDFDEIRNNLGAQPSPLAPTALTKATGHFASNAYFQEGAITIQDE 236

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++ +         + ++LD C+APGGKT  +   ++  K+TALD+ + +L  +R N +RL
Sbjct: 237 TSQLVAPTLAIKGDENILDACSAPGGKTCHMASYLTTGKITALDIHEHKLLLVRENAERL 296

Query: 287 H-LYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             L   +   +DA        +  FD +LVDAPCS  G IRR PD+ + +D+ D+     
Sbjct: 297 GVLDKIETRALDACRVHEVFARDSFDKILVDAPCSGIGLIRRKPDIKYNKDSQDLTALQT 356

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      ++ GGI+ +S C++  +++ +V++K L S          N    K   
Sbjct: 357 LQLEILSSVCQTIRKGGIITYSTCTIFDEENFQVIEKFLESHS--------NFEQVKLKH 408

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +  +G I +TP+  +         DGFF   +RR+
Sbjct: 409 TQADIVKDGCILVTPEQYQ--------TDGFFISQVRRI 439


>gi|257485586|ref|ZP_05639627.1| sun protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330985725|gb|EGH83828.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331011875|gb|EGH91931.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 448

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 120/455 (26%), Positives = 200/455 (43%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +  + +  + +   LN   L        +       P  + SLPGF EG   VQD +A +
Sbjct: 175 VNRRHNSRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFTEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDIV  A  Q +L
Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A 
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA- 413

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                         ++     G DGF+   L ++ 
Sbjct: 414 -----------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|116495106|ref|YP_806840.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
 gi|116105256|gb|ABJ70398.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
          Length = 446

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 186/465 (40%), Gaps = 46/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N RL++   LS V  +       LD          L+ RD  L+  IV   ++  
Sbjct: 1   MTPN-NPRLLAVETLSRVTGQGGYSNLTLDHVINSHK---LTPRDAGLLTNIVYGVIQRQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   +     +    ++ LL  +V Q+ YLD V   AV   + E AK+   ++ 
Sbjct: 57  LTLDFYLAPFIKG--RKLDNWIRCLLDTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172
            AK V  +LR   R        IA         S  P W  E+L    G+ +  AI +  
Sbjct: 114 IAKFVTGVLRNAQRTGFPDPAAIADPVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVI 173

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224
             P +  L V     T A  L ++              I L      +     F +G + 
Sbjct: 174 NVPAHASLRVNTTKITPAALLASLKPEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT  +        G +VTALD+   ++  +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293

Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  RL L        +DA       P   FD +LVDAPCS  G IRR P++ +T+  +
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATTFPANSFDKILVDAPCSGLGLIRRKPEIKYTKTPE 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D       Q  +L      +K GG + +S C++ K+++++VV + L + P   ++     
Sbjct: 354 DPAHLQQIQLAILNSVAPTLKIGGRLTYSTCTMVKEENQDVVAQFLAAHPEFEQVSVPTL 413

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   A A      +++ PD  +         DGFF  +L R
Sbjct: 414 KPLHKAHNAPA------LQLFPDDYD--------TDGFFIASLIR 444


>gi|225028095|ref|ZP_03717287.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353]
 gi|224954565|gb|EEG35774.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353]
          Length = 466

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 100/462 (21%), Positives = 190/462 (41%), Gaps = 37/462 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   + R  +   L  + R +      +      + F    + D+     +        
Sbjct: 16  MEKRTDMRAEALDTLIDIERNKKLSHIAIGETLMRNQFEK--KADRAFYTRLCEGVTERK 73

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D +LD    + + + K  ++ LLR+   QIL++DV D A    AV  AK+    R  
Sbjct: 74  IYLDYILDHYSKTPMKKCKPLIRSLLRMGAYQILFMDVRDAAACSEAVSLAKKRGFGR-L 132

Query: 121 AKLVNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           +  VN +LR            +K + ++ ++ I  +PEW  + +   YGKE    I  + 
Sbjct: 133 SGFVNGVLRTLVREKENLPVPDKKDDVKYVSIIYSVPEWLSKLIIEQYGKESAEKIFASF 192

Query: 173 ISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVW 223
           +    + +       T                                +  +  F +G +
Sbjct: 193 LEARPLTIRTNLSKTTPEELEKELEEAGVKVEKGNYLPYAFTISNLNYLGKIAAFRQGKF 252

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLR 280
            VQD S+ + V +        VLD+CAAPGGKT           KV + D+++ + E + 
Sbjct: 253 AVQDESSQLAVAIADINEGDFVLDVCAAPGGKTFHAADRLKGAGKVLSRDLTEYKTELIE 312

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
            N DR+H    ++ + DA +      +  D +L D PCS  G + R  D+ +    + + 
Sbjct: 313 ENKDRMHYENVEVQQWDALEEDESLLESVDVLLADLPCSGLGIMGRKNDIKYQMTEEQLG 372

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  QR++L     +VKPGG ++FS C+L+K ++ E ++ +  ++P+ +    ++   +
Sbjct: 373 ELAALQRQILSVVWKYVKPGGQMIFSTCTLNKGENAENIKWIEENTPLHL----VSIEEY 428

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              ++      +G++++ P             DGFF    +R
Sbjct: 429 LPQNLKNRTGSQGYLQLIPG--------EDTCDGFFISKFKR 462


>gi|71736115|ref|YP_272333.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556668|gb|AAZ35879.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326680|gb|EFW82725.1| sun protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331346|gb|EFW87289.1| sun protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330881831|gb|EGH15980.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 448

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 120/455 (26%), Positives = 200/455 (43%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCAHKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +  + +  + +   LN   L        +       P  + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHNSRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +L
Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALASLQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A 
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA- 413

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                         ++     G DGF+   L ++ 
Sbjct: 414 -----------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius ED99]
          Length = 433

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 191/454 (42%), Gaps = 44/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R +S   +  V++        ++          L+  D+ L   +V  T++    +D  
Sbjct: 4   VRELSLMTIEAVLKDGAYSNLKMNEMLQTYP---LNPADRGLYTELVYGTIKRKLTLDYY 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   + + +      +++LL +S+ Q LYLD V  +A+++ AV  AK+ +        VN
Sbjct: 61  LKPFVKTKIKG---WVRRLLWMSLYQFLYLDKVPTHALINEAVNIAKK-RGGAQTGNTVN 116

Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           +ILR+++ +         +  +R++    IP W  +     +G +   AI+   + P   
Sbjct: 117 AILRQMTSQPLPDITAIKKQPERLSIQYSIPTWIIKHWLTHFGADTTEAIAANLLLPGTQ 176

Query: 179 DLTV---KFDIETWAHKLNAVMLP-----TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
            + V   +  ++    +L A            + L      +++   F +G+  +QD S+
Sbjct: 177 TVRVNRTQITVDEAIEQLRAEGFDVQSDTHIDVCLHVSGHGVMTSELFQKGLISIQDKSS 236

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLH 287
               +        +VLD C+APGGK   +         V A DV   +++ +  N+ +LH
Sbjct: 237 MFVAEYMELQPGDAVLDSCSAPGGKACHMAEILNDQGTVLATDVHAHKIQLIDHNIRKLH 296

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           L     ++ DA      + FD VL+DAPCS  G +R  P++ +     D+      Q ++
Sbjct: 297 LTGIRAMQHDATQ-PYDQQFDKVLLDAPCSGLGVLRHKPEIKYVITPQDVKGLVDLQLRI 355

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           +      +K GG +V+S C++++ +++ V+   L+S P   E  P+              
Sbjct: 356 IDNVSKHLKAGGTMVYSTCTIEQLENDNVIYTFLKSHP-DFEFDPIEDPRTHEPV----- 409

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +++ P  +          DGFF   +R+ 
Sbjct: 410 ---KTLQLLPQDMHA--------DGFFITRVRKK 432


>gi|306825761|ref|ZP_07459100.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432122|gb|EFM35099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 437

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 203/459 (44%), Gaps = 38/459 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  IV  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSH---LSAADKGLVTEIVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +SV Q+ +LD V D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDKLDNWLYVLLLMSVYQVRFLDKVPDHAVVNEAVELAK--VRKQG 114

Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             KLVN++LRR+ RE            +R +    +P W   +L+  YG+ER  AI  + 
Sbjct: 115 SEKLVNAVLRRILREGWPDIATIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFKSL 174

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              +   I +T     E     L A   P     L +          FAEG   +QD S+
Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEATDSPLAATGLVKEQGHFAGHDLFAEGAITIQDESS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  VLD CAAPGGKTA +   ++  KVTALD+   +L+ ++ N  RL +
Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLTSGKVTALDLYDHKLDLIQENAQRLSV 294

Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q
Sbjct: 295 ADRVQTQKLDARKVHEFFGRDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  +++ +VV+  L S P             K     
Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +  +G I ITP++         G DGFF     ++ +
Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFCKISE 437


>gi|225868018|ref|YP_002743966.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701294|emb|CAW98294.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 442

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 195/451 (43%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  ++  +          L  +  +   + LS +D+ LV  IV  T+     ++  
Sbjct: 11  ARGQALLIVEDIFDHGAYSNLALKHQLAN---QSLSDKDKALVTEIVYGTISRKITLEWY 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     R    +  LL +S+ Q+ YLD V  +A+V+ AV  AK     R   KLVN
Sbjct: 68  LAHYIE-DRDRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARTHGRGADKLVN 126

Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+++ +            +  A    +P W  ++L + +G++R +AI ++    S  
Sbjct: 127 AVLRQLTNKPLPDIKSIKRKNKYYAVAYSVPVWLVKKLIDQFGEKRAVAILESLFVRSRA 186

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T     +       +         L +      +   F  G   +QD ++ +    
Sbjct: 187 SIRVTDLAKFDEIKQATGSEQSLLAETGLTKRAGHFAASSYFINGDITIQDETSQLVAPT 246

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                   +LD C+APGGKTA +   ++  KV ALD+ + +L  +  N  RL +    + 
Sbjct: 247 LDIQGQEMILDACSAPGGKTAHIASYLTSGKVVALDLYEHKLALVNENAKRLGVADRIET 306

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             +D      +  K  FD +LVDAPCS  G IRR PD+ + ++  D  +    Q ++L  
Sbjct: 307 KVLDAREVHKHFAKDSFDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSS 366

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  +++ +V+ K L+  P        N            +  +
Sbjct: 367 VCQTLRKGGIITYSTCTIFDEENFQVIDKFLQRHP--------NFEQVTLKHAQADIVKD 418

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G + ITP+  +         DGFF   +RR+
Sbjct: 419 GCLMITPEQYQ--------TDGFFIGQVRRV 441


>gi|229828532|ref|ZP_04454601.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM
           14600]
 gi|229793126|gb|EEP29240.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM
           14600]
          Length = 429

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 188/460 (40%), Gaps = 56/460 (12%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +   +LS V+ +      LL        +  L +R +  +  +    +     +D
Sbjct: 1   MNEREIVLQILSAVLEEGAYSHLLLQAVL--DKYAYLDKRQRAFISRLTVGVIERKISLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L+    + + + K  ++  LR+ + QILY+D V D A  + +V+   R          
Sbjct: 59  YILNHYSRTPVKKMKPMIRNSLRMGLYQILYMDAVPDSAACNESVKLIARRYRP--LKGF 116

Query: 124 VNSILRRVSREKIE-----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           VN +LR ++R + E               +P+W  +     +G+E   +I  + ++P   
Sbjct: 117 VNGLLRNIARHRQEALSLLKDASPGIRYSMPDWLMKEWSKRFGREGCESICKSFLAPRKT 176

Query: 179 DLTVK---FDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            + V      +E    KL                      +SI  L  + EG+++VQD S
Sbjct: 177 CIRVNLARISVEDLIEKLEGEGVSVLRSEDLDYALYISGYDSIKKLLSYREGLFYVQDLS 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPG-------GKTAQLIVSGAKVTALDVSKRRLEKLRCN 282
           + +  +         VLD+CAAPG        K A +  S  +V A D+++ ++ ++R N
Sbjct: 237 SMLVAERAPVRGGSRVLDVCAAPGGKSLHIAEKLACMDRSEGRVLARDLTEDKVARIREN 296

Query: 283 LDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           + R  +        DA        + +D VL D PCS  G I R P++ +     D+   
Sbjct: 297 IARSQMDNISAQVFDARVDDAASHEAYDIVLADLPCSGLGVIGRKPEIRYRLQPKDLSAL 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q ++L    ++VK  G +V+S C++  Q++EE  ++ L  +P               
Sbjct: 357 AGLQTQILSVVKNYVKAQGSLVYSTCTISGQENEENTERFLAENPDF------------- 403

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +S E   +I PD        +SG DGFF     R
Sbjct: 404 ----HLISQE---QILPD--------ASGRDGFFISVFSR 428


>gi|268319212|ref|YP_003292868.1| rRNA methylase [Lactobacillus johnsonii FI9785]
 gi|262397587|emb|CAX66601.1| rRNA methylase [Lactobacillus johnsonii FI9785]
          Length = 440

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 196/457 (42%), Gaps = 45/457 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+   L  V  ++      L+ E        L   D+ L   IV  T+++   ++ 
Sbjct: 3   NARTVALETLIKVFNQKSYSNIALNNELIKH---DLKLADKALATRIVYGTIQYKIFLEY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123
            L  ++ + L      L+ LL +S  Q  +L+ V   A+ D A + AK+  K N    KL
Sbjct: 60  QLKPLIKTKLR--DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKKYSKRNSGSYKL 117

Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR      ++     +L++ ++     P+W  E L + +G+     I      P  
Sbjct: 118 VNGILRALERQGKILPPTNDLVEYLSIKESFPKWLVEYLLDHFGENETKEILVRSNQPAA 177

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + +     D E    +L                L      +     F  G   +QDA+
Sbjct: 178 NSIRMTTKESDFEEIKEELKKDTFSFEESSLTPHNLNLNKGGVAQTALFKNGKITIQDAA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287
           AS+ V  F    +  VLD C+APGGKT Q+  +     V ALD+ + +L  +R   +RLH
Sbjct: 238 ASLAVDAFDFKGSEQVLDACSAPGGKTVQIAENLTTGSVIALDIHENKLRLVRNAAERLH 297

Query: 288 LYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +        +DA     Y  +  FD +LVDAPCS  G IRR P++ + +  +DI   A  
Sbjct: 298 VSDKVKTKALDARKAKEYFNQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKI 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      +  GG +V+S C++  ++ E VV++ L+  P   EL+P+          
Sbjct: 358 QLAILESVSGLLANGGELVYSTCTISYEEDEGVVKQFLKLHP-DFELMPVQVGKLP---- 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  +RI P         S G DGFF   L++
Sbjct: 413 -----KQEMVRIFPS--------SDGSDGFFIAKLKK 436


>gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 428

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 119/433 (27%), Positives = 185/433 (42%), Gaps = 37/433 (8%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88
           LD  +       L  RD+  V+ +V   LR   R+DA+L   +   L      +  +LR+
Sbjct: 7   LDQSFER-RTPTLDARDRRWVQELVWGVLRHRERLDAILATRIRGGLSVLDDGVLDILRL 65

Query: 89  SVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE--------KIELL 139
              Q+L +D V  YA +  +VE  KR        KLVN++LRR+ RE          + +
Sbjct: 66  GTYQLLSMDSVPPYAAIGQSVEAVKRKHG-IGAGKLVNAVLRRIDRERATIEPALPADPV 124

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVML 198
             +A     P W   R  + +G      +     +P  + +       +  A  L    +
Sbjct: 125 DALALQHSHPSWVVGRWVSQFGIAETAQLLALNNTPAPVVVRPHGVQADALAESLTQSDV 184

Query: 199 PTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
            T  + L         P ++  +  F  G ++VQD +A++  Q         V DLCAAP
Sbjct: 185 STRRVPLVPESLEITGPVALTEVDAFRRGQFYVQDPAATLVAQYAHVPEGSVVADLCAAP 244

Query: 253 GGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLF 307
           G K  ++      V A D S+ R++++R   DRL +                        
Sbjct: 245 GSKALEMARRARLVIAADRSESRVDRMRSGFDRLGIDTTSSNRAMVTLVADATQPSIDPV 304

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           DAVLVD PC+ TGT RRHPD  W     D       QR++L    + V+P G++++S CS
Sbjct: 305 DAVLVDVPCTGTGTFRRHPDARWRLQASDFAVLGALQRQILTAAAAVVRPNGLLIYSTCS 364

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L+ ++++EVV   L S P  V   P       +  ++ A+   G +R+ P          
Sbjct: 365 LEAEENDEVVDAFLASHPDFVVEPP------PAGVVSDAVIDRGRLRVLPQ--------Q 410

Query: 428 SGMDGFFAVALRR 440
            G DG FAV +RR
Sbjct: 411 HGFDGAFAVRMRR 423


>gi|33152966|ref|NP_874319.1| Fmu protein [Haemophilus ducreyi 35000HP]
 gi|46396801|sp|Q7VKC4|RSMB_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|33149191|gb|AAP96708.1| SUN protein [Haemophilus ducreyi 35000HP]
          Length = 435

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 210/461 (45%), Gaps = 44/461 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    ++R +++ ++  V+    SL+ L+      +A + L  +D  LV+ I     R 
Sbjct: 1   MKHKKTSSRAIAAQIMLQVLDHGKSLSTLIP-----AAQQQLDAKDIPLVQEITFGICRV 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           LPR++A++  ++   L  K   +  LL V + Q+LY+ +  +A VD  V  A +  +   
Sbjct: 56  LPRLEAIIQQLVTKPLKGKSRLVHCLLLVGLYQLLYMRIPVHAAVDEVVN-ATKLVKLDS 114

Query: 120 FAKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           F  L N +LRR  RE+  +         ++ PEW    L+  Y   R +  ++    P++
Sbjct: 115 FRALTNGVLRRFLREQQTILAKVDKHWQTLHPEWLVNMLKQVYPNWREIMDANNQRPPMW 174

Query: 178 IDLTVKFDI---------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           I +  +            +      N+             P S+  LP F+ G   VQD 
Sbjct: 175 IRVNTQHCTPQDYSALLGDLAVKTTNSSACLPSSAIQLVNPLSVDKLPYFSRGWATVQDC 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286
            A     L    N   +LD CAAPGGKT  ++    +  V ALD+ + RL ++R NL RL
Sbjct: 235 HAQWSATLLAAKNGEMILDACAAPGGKTTHILEQAPQAKVIALDIEESRLVRVRENLARL 294

Query: 287 HLYAEDIIEMD----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            L A D+   D            +FD +L+DAPCS+TG IRRHPD+ W R   DI +   
Sbjct: 295 GLTA-DVRCGDATTPTKWLADDVMFDRILLDAPCSATGVIRRHPDIKWLRQAGDISELVE 353

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q K+L      +KP G +V++ CS+   ++ E + + + ++P   EL+ ++    K+I 
Sbjct: 354 LQAKILSALWHRLKPNGTLVYATCSILPAENSEQIIQFITANP-DAELIEMDFNGEKAI- 411

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                      +  P          +G DGFF   LR+L +
Sbjct: 412 ---------MKQFLPQ--------QNGGDGFFYAKLRKLDK 435


>gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
 gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
          Length = 445

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 209/456 (45%), Gaps = 41/456 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            + ++ R +++ ++  V+ +  SL+ LL           +  +D  L++ I     R LP
Sbjct: 11  STALSVRAIAAQVILQVLDQGKSLSTLLPEV-----QLQVKPQDLPLLQEITFGICRVLP 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            ++ ++  +L   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F 
Sbjct: 66  CLENIIKKLLDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFR 124

Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN +LRR  REK ++  +      ++ PEWF  +++  Y   R +  ++    P+++ 
Sbjct: 125 GLVNGVLRRFLREKEDILSVVDKHWQTLHPEWFVNKIKKAYPNWREIIEANNQKPPMWLR 184

Query: 180 LTVKFDI----ETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIP 233
           +  + +      T   K               L +   +  LP F +G   VQD +A   
Sbjct: 185 VNQQQNNTKTYRTLLEKQEIAAFECDNPHALRLAQPLSVSKLPNFEQGAVTVQDLNAQWS 244

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAE 291
             L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL RL+  A 
Sbjct: 245 ALLLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLSRLNQQAT 304

Query: 292 DII-------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +        +  +        FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 305 VVCGDATEPEKWLSEIGLSGASFDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQ 364

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L    + +KP GI++++ CS+   ++ + +Q+ L  +    EL+PL     ++    
Sbjct: 365 GQILKALWAKLKPNGILLYATCSVLPDENSQQIQRFLAETSN-AELMPLPFEQTENTI-- 421

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I+  P          +G DGF+   LR+
Sbjct: 422 -------GIQFLPQ--------ENGGDGFYYAKLRK 442


>gi|259503543|ref|ZP_05746445.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
 gi|259168621|gb|EEW53116.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
          Length = 448

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 123/467 (26%), Positives = 192/467 (41%), Gaps = 46/467 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M    M AR V+   L  V R+       L+          L+  D+ L   IV  TL+ 
Sbjct: 1   MTNKKMTAREVALTALDRVRRRGAYSNLQLNQLLSKHQ---LNDNDRRLATRIVYGTLQR 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
              ++  L   +     +    ++ LL  ++ Q  YL  V D+AV D  +E AK+   N 
Sbjct: 58  QLTLEYWLQPFVKG--KKLDSWVETLLLTALYQYQYLERVPDWAVTDETIEIAKQW-GNP 114

Query: 119 HFAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDA 171
              K V  +L  V R+      ++       A    +P W  + L + YG+ +   +  +
Sbjct: 115 GIRKFVTGVLHAVLRQGFPRFDQLRDESERLAVQFSVPRWLVDELVSQYGQSQATRVLQS 174

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVW 223
              P  + + V     D+ T   +L A  +           L      ++    FA G  
Sbjct: 175 VNDPARLVVRVNTAVTDLATVESQLRAAGIEFQKSRVAPNALVITKGELLGSALFATGQI 234

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEK 278
            VQD SA + V          VLD CAAPGGKT Q        +G +V ALD+ + + + 
Sbjct: 235 TVQDESAMLAVDSMNVQPGDRVLDACAAPGGKTVQIAERLDPATGGRVDALDIHEHKTKL 294

Query: 279 LRCNLDRLHLYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           ++ N  R+H+        +DA     +     FD +LVDAPCS  G +RR P++ +T+  
Sbjct: 295 IQKNASRMHMADRVVTHTLDARRVADEFADETFDKILVDAPCSGIGLLRRKPEIRYTKSL 354

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D  K    Q  +L      VK GGI+ +S C++ +Q++E+ VQ+ L +      L    
Sbjct: 355 ADSQKLHKIQGSILNAVAPKVKKGGIITYSTCTILQQENEQTVQEFLAAHSDFRLLTTKT 414

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           S   K    +  L+      I P           G DGFF   L+R+
Sbjct: 415 SRNLKDDRASATLT------ILPADY--------GSDGFFISNLQRI 447


>gi|325957114|ref|YP_004292526.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
 gi|325333679|gb|ADZ07587.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
          Length = 442

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 109/461 (23%), Positives = 194/461 (42%), Gaps = 44/461 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  +AR +S   L  V++ +      L+     S    LSQ DQ L   +V  T+++ 
Sbjct: 1   MSTSKSARAISLETLIKVLQDKSYSNISLNNSLNHS---DLSQADQNLATKVVYGTIQYR 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L  ++   L  K   L+ LL +S+ QI++LD V + AV+D A + AK+  ++  
Sbjct: 58  LFLEYQLKGLVRIKLTEK--YLKPLLLMSIYQIVFLDKVPNRAVLDEANKLAKQFGKHHS 115

Query: 120 FAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
               V + + R    +        + ++ ++    +PEW      N +G +R   + ++ 
Sbjct: 116 SGYRVVNGILRSFIRRGVILPDAKDEIKYLSVKESMPEWLVNYFANHWGMDRTKKLLESI 175

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWV 225
                  + ++   D +   ++L                +      +     F  G   +
Sbjct: 176 NQSAKNSVRISALCDRDQVFNQLKTEGYEPEWSNLSVNDIILGHGGVSQSDLFKRGKLTI 235

Query: 226 QDAS-ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCN 282
           QD + + +            +LD C+APGGKT Q+        VTALD+ +++L  ++ N
Sbjct: 236 QDEAASLVIESFDFDSKEEHILDACSAPGGKTVQMAERVVVGDVTALDIHEKKLHLVKEN 295

Query: 283 LDRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             R+++     I   DA           F  +LVDAPCS  G +RR P++ +T+   D+ 
Sbjct: 296 AKRMNVANKVKIKACDARKVQDVFKPGEFTKILVDAPCSGLGLLRRKPEIRYTKTERDLQ 355

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q  +L      +K  G +V+S CS+  ++ E VV+K L+  P   EL P   +  
Sbjct: 356 NLQKIQLAILESVSPLLKEDGELVYSTCSISVEEDEAVVEKFLKLHP-DFELKPFKLSKL 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +        S  G ++I PD            DGFF    +
Sbjct: 415 E--------SKTGMLKIMPD--------QDNNDGFFIAKFK 439


>gi|313890028|ref|ZP_07823664.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121619|gb|EFR44722.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 440

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 113/459 (24%), Positives = 201/459 (43%), Gaps = 38/459 (8%)

Query: 1   MKSG--MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M +     AR  +   +  +          L+ +  + + +    +D+ L+  IV  T+ 
Sbjct: 1   MANNWKTKARGKALLAIEDIFDNGAYSNIALNNQLSNHSVQ---DKDKGLITEIVYGTIA 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
               ++  L   +     +    +  LL +S+ Q+LYL+ +  +A+V+ AV+ AK     
Sbjct: 58  KKITLEWYLSHYVE-DREKLDKWVYYLLMLSLYQMLYLEKIPSHAIVNDAVDIAKNRGYK 116

Query: 118 RHFAKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           R   K +N+ILR+VS              +R +    +P W  ++L   +G +R +AI +
Sbjct: 117 RGAEKYINAILRQVSVGNLPSLDSIKRKNKRYSIAYSVPIWLVKKLCEQFGDDRAIAIME 176

Query: 171 A--CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           +    S   I +T     +     L A         L +      S   F EG+  +QD 
Sbjct: 177 SLSFHSKASIRVTNSQRFDEVRDYLEAQTSALAPTALTKTTGHFASHAYFQEGLITIQDE 236

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++ +         + +VLD C+APGGKT      ++  K+TALD+ + +L  +R N +RL
Sbjct: 237 TSQLVAPTLAIKGDENVLDACSAPGGKTCHLASYLTTGKITALDIHEHKLTLVRQNAERL 296

Query: 287 H-LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             L   +   +D     +      FD +LVDAPCS  G IRR PD+ + +D  D+     
Sbjct: 297 GVLDKIETRALDARKVHEVFANDSFDKILVDAPCSGIGLIRRKPDIKYNKDGQDLTALQN 356

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      ++ GGI+ +S C++  +++ +V++K L S          N    K   
Sbjct: 357 LQLEILSSVCQTIRKGGIITYSTCTIFDEENFQVIEKFLESHS--------NFEQVKLKH 408

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +  +G I +TP+  +         DGFF   +RR+
Sbjct: 409 TQADIVKDGCILVTPEQYQ--------TDGFFISQVRRI 439


>gi|21673438|ref|NP_661503.1| Sun protein [Chlorobium tepidum TLS]
 gi|21646540|gb|AAM71845.1| sun protein [Chlorobium tepidum TLS]
          Length = 428

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 195/457 (42%), Gaps = 53/457 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR ++  +L  +   R S   LL+  +       L + D+ L + +V  TL++  + D
Sbjct: 1   MTARELALRVLLELDGMRKS-EELLNRMHEH---AGLGKNDRALAKELVAGTLKYRLQCD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            ++         +    L+ +LR+ V Q+L LD V   A V+ +V+ A++ K + H A+L
Sbjct: 57  FIIARFYRHDYAKAATVLKHILRLGVYQLLRLDRVPKSAAVNESVKLARKFKGD-HLARL 115

Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR +S+  I+L    A +            PEW   R    YG +  LA+      
Sbjct: 116 VNGLLRNISKATIDLDAWTAEMPESKRLSILYSFPEWLAARWLMRYGPDATLAMLAHGNL 175

Query: 175 PL---YIDLTVKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
           P    Y    +K + ET   +        V    G  R     +  +  P   EG+  VQ
Sbjct: 176 PPATGYRINRLKANPETLLARPELSDAKRVADADGLDRFFFSKQFALLEPLLKEGLVSVQ 235

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           + +      +       +V D+CAAPGGK+  +   + +  ++ ALD +  ++ ++  N 
Sbjct: 236 NPAQGQACLMAAPEPGSTVFDMCAAPGGKSTFMAELMENRGRIIALDRTPAKVARIASNA 295

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             L +   +  E DA  + P    D +L+DAPC+ TG + R  ++ W    + + + A  
Sbjct: 296 SALGITIIEPREGDALTFDPGCAMDTILLDAPCTGTGVLGRRAELRWRTTPEKLRELAAL 355

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L +  S ++PGG+++++ CS++ +++E   +  L+  P  +               
Sbjct: 356 QAAMLDRAASLLRPGGVLLYATCSVEPEENELQTEAFLKRHPEFI--------------- 400

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 E      P           G DG FA   R+
Sbjct: 401 -----AEASRLTLPG-------SHEGFDGGFAARFRK 425


>gi|189426656|ref|YP_001953833.1| sun protein [Geobacter lovleyi SZ]
 gi|189422915|gb|ACD97313.1| sun protein [Geobacter lovleyi SZ]
          Length = 464

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 117/474 (24%), Positives = 188/474 (39%), Gaps = 48/474 (10%)

Query: 1   MKSGMNA-------RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53
           M     A       R  +   L  +    +    L+D E   +  +     D+ L   +V
Sbjct: 5   MSKQQPATPATGSPRQAAYTTLQRLSGSDLHADDLIDQELSRNQLQG---PDRGLFAELV 61

Query: 54  NVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
              LR    +D  L  ++   L R +  +  LLR+ + Q+ YLD V  +A V   VE   
Sbjct: 62  FGVLRRQGTLDHYLKQLVQQPLERLELPVLLLLRLGLYQLRYLDRVPSHAAVHATVELTN 121

Query: 113 RDKENRHFAKLVNSILRRVSREK---------IELLQRIAGISIIPEWFKERLENFYGKE 163
                     L+N +LR   R +          +    +A    +P W  E+    + + 
Sbjct: 122 EIL--PRAKGLINGVLRSYLRRQESLTLPDPARQPAAWLAAAYSLPGWLAEQWLQQFSQN 179

Query: 164 RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVS 214
               ++ A      + L V            + +A  L     R             I  
Sbjct: 180 EAAGLAAASTEIPPLTLRVNTLRISRSALLERFHAAELAAEPCRFAPEGIQLLQRCQITG 239

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDV 271
           LPGF EG++ VQD ++ +   L        +LD+CAAPGGK   L   +     +TA D+
Sbjct: 240 LPGFDEGLFMVQDEASQLVAHLLAPQTGEQILDMCAAPGGKATHLAQLMNDRGCITATDL 299

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           + RR+ ++  +  RL L +   +  D    DY     FD +L+DAPCS  G IRR+P+  
Sbjct: 300 NARRIRRICESAQRLGLTSIQAVAADALTSDYLEGLQFDRILLDAPCSGLGVIRRNPEAK 359

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W     +I + A  Q  L+    + +KP G++V++ CS   ++ E V++  L   P  V 
Sbjct: 360 WRLTPAEISRCAARQHLLIDAAAARLKPAGVLVYATCSTAMEEDETVIKDFLSRHPEFV- 418

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              + +               G++R  P           G DGFFA  LRR++Q
Sbjct: 419 ---VENGAQFFPAWTDLFDCSGYLRAWPH--------RHGTDGFFAARLRRVMQ 461


>gi|330957387|gb|EGH57647.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 441

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 197/456 (43%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +           RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   LN   L        +       P  + SLPGFAEG   VQD +A 
Sbjct: 174 RVNRRHHSRDQYLELLNTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L
Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSAVVAVDLEAKRLVRVRENLDRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        D   +     F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +
Sbjct: 294 DAELIAADARDTASWWDGTPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL         +  +  A
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQDGQPAAGIKQA 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                          ++     G DGF+   L ++ 
Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|319892211|ref|YP_004149086.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 433

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 191/454 (42%), Gaps = 44/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R +S   +  V++        ++          L+  D+ L   +V  T++    +D  
Sbjct: 4   VRELSLMTIEAVLKDGAYSNLKMNEMLQTYP---LNPADRGLYTELVYGTIKRKLTLDYY 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   + + +      +++LL +S+ Q LYLD V  +A+++ AV  AK+ +        VN
Sbjct: 61  LKPFVKTKIKG---WVRRLLWMSLYQFLYLDKVPTHALINEAVNIAKK-RGGAQTGNTVN 116

Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           +ILR+++ +         +  +R++    IP W  +     +G +   AI+   + P   
Sbjct: 117 AILRQMTSQPLPDITAIKKQPERLSIQYSIPTWIIKHWLTHFGADTTEAIAANLLLPGTQ 176

Query: 179 DLTV---KFDIETWAHKLNAVMLP-----TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
            + V   +  ++    +L A            + L      +++   F +G+  +QD S+
Sbjct: 177 TVRVNRTQITVDEAIEQLRAEGFDVQSDTHIDVCLHVSGHGVMTSELFQKGLISIQDKSS 236

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLH 287
               +        +VLD C+APGGK   +         V A DV   +++ +  N+ +LH
Sbjct: 237 MFVAEYMELQPGDAVLDSCSAPGGKACHIAEILNGQGTVLATDVHAHKIQLIDHNIRKLH 296

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           L     ++ DA      + FD VL+DAPCS  G +R  P++ +     D+      Q ++
Sbjct: 297 LTGIRAMQHDATQ-PYDQQFDKVLLDAPCSGLGVLRHKPEIKYVITPQDVKGLVDLQLRI 355

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           +      +K GG +V+S C++++ +++ V+   L+S P   E  P+              
Sbjct: 356 IDNVSKHLKAGGTMVYSTCTIEQLENDNVIYTFLKSHP-DFEFDPIEDPRTHEPV----- 409

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +++ P  +          DGFF   +R+ 
Sbjct: 410 ---KTLQLLPQDMHA--------DGFFITRVRKK 432


>gi|237801648|ref|ZP_04590109.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331024507|gb|EGI04563.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 441

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 122/455 (26%), Positives = 200/455 (43%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +           RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPPHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +  + D  + +  +L    L        +       P  + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHDSRDHYLERLRTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+ +  +   V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEAQPQLGGVVAVDLEAKRLVRVRENLDRLGLN 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        D   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +L
Sbjct: 295 AELIAADARDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALASLQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG++V++ CS    ++ EV++  L  +    EL     A      +    
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSGARELDIAGQAGQPPAGIKQ-- 412

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                    P    ++     G DGF+   L ++ 
Sbjct: 413 ---------PH-GRQLLAQQGGHDGFYYAKLIKIA 437


>gi|239993908|ref|ZP_04714432.1| 16S rRNA m(5)C 967 methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 439

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 193/460 (41%), Gaps = 44/460 (9%)

Query: 1   MKS-----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           MK        N R   + ++  ++ +  S    L+           + +D   ++ +   
Sbjct: 1   MKPLPLPKQKNLRADCAWVIYQILEQGKSSRECLERVQRRH-----NAKDNAWIQEMSLG 55

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R LP +   L  +L   L   K  ++ L+ + + Q+ +  V+++A V   V  A    
Sbjct: 56  VMRRLPLLQHWLRSLLDRPLKGNKKVIEHLILLGLYQLNFSRVSNHAAVGETVAAA-SYL 114

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIA--GISIIPEWFKERLENFYGK--ERVLAISDA 171
                  LVN++LR   RE +           S +P+W  + +EN YG   E+V   ++A
Sbjct: 115 NAAGLKGLVNAVLRNFQRENLADKPVDDAIINSGLPKWLFKAIENAYGDDAEQVRNETNA 174

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWV 225
                     ++  +  +   L+   +            +      I +LPGF +G + V
Sbjct: 175 MAPIWLRVNKLQTSLAAFTQALDKAGVEYTLSANHADAVILTKRVDITALPGFEKGHFAV 234

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCN 282
           QD +A +         N  +LD CAAPGGKT  ++          ALD    RL+++  N
Sbjct: 235 QDGAAQLAAHYLKPQANERILDCCAAPGGKTGHIVECAPDTQYVLALDADATRLKRVEEN 294

Query: 283 LDR--LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           + R    +  +     +   +   K FD +L+DAPCS+TG IRRHPD+ W R  +DI   
Sbjct: 295 MTRLKHTVDIKQGDAANPDTWWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDNL 354

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  QR++L      +KPGG ++++ CS+  +++   +Q+ L  +P    L P+       
Sbjct: 355 AQLQRRILDTLWGLLKPGGTLLYATCSILPKENMAQIQQFLSDTPDAT-LSPILKTETVD 413

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                        +ITP   +        MDGF+   L +
Sbjct: 414 KP---------GRQITPGEQQ--------MDGFYYARLVK 436


>gi|239631985|ref|ZP_04675016.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066670|ref|YP_003788693.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
           Zhang]
 gi|239526450|gb|EEQ65451.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439077|gb|ADK18843.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
           Zhang]
          Length = 446

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 120/465 (25%), Positives = 185/465 (39%), Gaps = 46/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N RL++   LS V  +       LD          L+ RD  L+  IV   ++  
Sbjct: 1   MTPN-NPRLLAVETLSRVTGQGGYSNLTLDHVINSHK---LTPRDAGLLTNIVYGVIQHQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   +     +    ++ LL  +V Q+ YLD V   AV   + E AK+   ++ 
Sbjct: 57  LTLDFYLAPFIKG--RKLDNWIRCLLDTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172
            AK V  +LR   R        IA         S  P W  E+L    G+ +  AI +  
Sbjct: 114 IAKFVTGVLRNAQRTGFPDPAAIADPVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVI 173

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224
             P +  L V     T A  L ++              I L      +     F +G + 
Sbjct: 174 NVPAHASLRVNTTKITPAALLASLKPEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT  +        G +VTALD+   ++  +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293

Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  RL L        +DA           FD +LVDAPCS  G IRR P++ +T+  +
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATTFSANSFDKILVDAPCSGLGLIRRKPEIKYTKTPE 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D       Q  +L      +K GG + +S C++ K+++++VV + L + P   ++     
Sbjct: 354 DPAHLQQIQLAILNSVAPTLKIGGRLTYSTCTMVKEENQDVVAQFLAAHPEFEQVSVPTL 413

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   A A      +++ PD  +         DGFF  +L R
Sbjct: 414 KPLHKAHSAPA------LQLFPDDYD--------TDGFFIASLIR 444


>gi|262182499|ref|ZP_06041920.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 468

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 99/468 (21%), Positives = 149/468 (31%), Gaps = 44/468 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  +L  V          L      +    LS RD      +   TLR    +DAV
Sbjct: 12  PRAVAFEVLQRVEADDAFANLTLPKAVSAN---NLSGRDAAFSTELTYGTLRSEGVLDAV 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       L      +   LR+   Q+LY  V  +A VD  V   +    +       N 
Sbjct: 69  IATCASRGLEAIAPDVLTALRMGTYQVLYTRVEAHAAVDTTVRLVEA-AGHEKAKGFANG 127

Query: 127 ILRRVSREKIELLQRI----------AGISIIPEWFKERLE-------------NFYGKE 163
           I+R ++R                   A     PEW                   N     
Sbjct: 128 IMRTITRTPAHEWLDKLAPQEEVAAVAFRHAHPEWIARSFGRALGLLDTGDSKLNAEQTT 187

Query: 164 RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
            +    +A      + L  +      E  A              +        SL    +
Sbjct: 188 ELERALEADSERPLVHLVARPGEISAEELALITGCEEGHYSPYAVYLEQGDPGSLEPVRQ 247

Query: 221 GVWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKR 274
            +  VQD  + +  +          +    LDLCA PGGK A +        A +D  + 
Sbjct: 248 KLAAVQDEGSQLIARAVTEAELIGEDTGRWLDLCAGPGGKAALMGAIARIEGAEVDAVEV 307

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
              +       +      +   D         FD VLVD PCS  G +RR P+  W +  
Sbjct: 308 SPHRATLVEKTVGDLPVRVHRADGRAPGLSAGFDRVLVDVPCSGLGALRRRPEARWRKTE 367

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            DI +    Q +LL   + FV+PGG+VV+S CS D +++  +V   L       E+    
Sbjct: 368 SDIAELNQLQSELLESALEFVRPGGVVVYSTCSPDLRETRGIVDAALERHGAGAEVRIEE 427

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 +     L  E   ++ P           G D  F   LRR+ 
Sbjct: 428 LDARDVLPEMGDLGSELSAQMWPH--------RHGTDAMFFAVLRRVA 467


>gi|15603426|ref|NP_246500.1| hypothetical protein PM1561 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|46397017|sp|Q9CKP7|RSMB_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|12721953|gb|AAK03645.1| Sun [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 446

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 205/456 (44%), Gaps = 43/456 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           ++ R +++ ++  V+ +  SL+ L+           +  +D  L++ I     R LPR++
Sbjct: 15  LSTRAIAAQIILQVLDQGKSLSTLIPDT-----QHQVKTQDLPLLQEICFGVCRVLPRLE 69

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++  ++   L  K   +  LL V + Q+LY  +  +A VD  V  A    +  HF  LV
Sbjct: 70  LIIKQLVDKPLKGKTRIVHCLLLVGLYQLLYTRIPAHAAVDEVVN-ATTALKAEHFRGLV 128

Query: 125 NSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           N +LRR  RE+    +       ++ P+W   RL+  Y   R +  ++    P+++ +  
Sbjct: 129 NGVLRRFLREQETLLVKVDKHWHTLHPDWLVNRLKEAYPNWREIVEANNHKPPMWLRVNQ 188

Query: 183 K-FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPVQL 236
           +    ET+   L    +               P ++  LP F EG   VQD +A     L
Sbjct: 189 QKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQDVNAQWSALL 248

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
               N   +LD CAAPGGKT         A V ALDV   RL+++  NL R+   A  +I
Sbjct: 249 LAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLARMQQQAT-VI 307

Query: 295 EMDAFDYCPKKL--------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
             DA                FD +L+DAPCS+TG IRRHPD+ W R   DI      Q++
Sbjct: 308 CGDATQPAQWLKQLSESAVQFDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQ 367

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + +KP GI++++ CS+  +++   +++ L ++ +  +L PL     +       
Sbjct: 368 ILQALWTVLKPNGILLYATCSVLPEENALQIEQFL-TNNVDAKLEPLPFTAVEGSV---- 422

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                  +  P          +G DGF+   LR+++
Sbjct: 423 -----GYQFLP--------TENGGDGFYYAKLRKVV 445


>gi|199597150|ref|ZP_03210582.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
 gi|199591954|gb|EDZ00029.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
          Length = 446

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 122/465 (26%), Positives = 196/465 (42%), Gaps = 46/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N RL++   L+ VM K       LD          L  RD  L+  +V   ++  
Sbjct: 1   MTPN-NPRLLAVQTLTRVMGKGGYSNLTLDHVITKYQ---LDSRDAGLLTNVVYGVIQHQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + +   +    ++ LL+ +V Q+ YLD V   AV   + E AK+   ++ 
Sbjct: 57  LTLDYLLAPFVKN--RQLDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113

Query: 120 FAKLVNSILRRVSREKIELLQRIAGI-------SIIPEWFKERLENFYGKERVLAISDAC 172
            AK V  +LR+  R        IA         S  P W  ++L+   G+ +   I  A 
Sbjct: 114 VAKFVTGVLRQAQRSGYPDPMTIADPIQRLAITSSTPVWLVKKLQAQLGETKTAKILAAI 173

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224
             P +  + V     T A  L A+ L            + L      +     FA+G++ 
Sbjct: 174 NQPAHASIRVNTTKTTAAALLKALQLQFPALKESPLTPVGLVAPGGHLAGTREFADGLYT 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279
           +QD S+ +            VLD CAAPGGKT  +        G +VTALD+   ++  +
Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293

Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           + N  RL L        MDA         + FD +LVDAPCS  G IRR P++ +T+  +
Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTKQPE 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D+      Q  +L      +K GG + +S C++ K+++++VV   L + P   E VP+ +
Sbjct: 354 DLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHP-EFEQVPVLT 412

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +            +++ PD  +         DGFF  +L R
Sbjct: 413 LKPLAKTHGAPA-----LQLFPDDYD--------TDGFFIASLIR 444


>gi|227890276|ref|ZP_04008081.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849090|gb|EEJ59176.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 438

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 197/457 (43%), Gaps = 45/457 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+   L  V  ++      L+ E        L   D+ L   IV  T+++   ++ 
Sbjct: 3   NARTVALETLIKVFNQKSYSNIALNNELIKH---DLKLADKALATRIVYGTIQYKIFLEY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123
            L  ++ + L      L+ LL +S  Q  +L+ V   A+ D A + AK+  K N    KL
Sbjct: 60  QLKPLIKTKLR--DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKKYSKRNSGSYKL 117

Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR      ++     +L++ ++     P+W  E L + +G+     I      P  
Sbjct: 118 VNGILRALERQGKILPPTNDLVEYLSIKESFPKWLVEYLLDHFGENETKKILVRSNQPAA 177

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + +     D E    +L                L      +     F  G   +QDA+
Sbjct: 178 NSIRMTTKESDFEEIKEELKKDTFSFEESSLTPHNLNLNKGGVAQTALFKNGKITIQDAA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287
           AS+ V  F    +  VLD C+APGGKT Q+  +     V ALD+ + +L  +R   +RLH
Sbjct: 238 ASLAVDAFDFKGSEQVLDACSAPGGKTVQIAENLTTGSVIALDIHENKLRLVRNAAERLH 297

Query: 288 LYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +        +DA     Y  ++ FD +LVDAPCS  G IRR P++ + +  +DI   A  
Sbjct: 298 VSDKVKTKALDARKSKEYFNQRQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKI 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      +  GG +V+S C++  ++ E +V++ L+  P   EL+P+          
Sbjct: 358 QLAILESVSGLLANGGELVYSTCTISYEEDEGIVKQFLKLHP-DFELIPVQVGKLP---- 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  +RI P         S G DGFF   L++
Sbjct: 413 -----KQEMVRIFPS--------SDGSDGFFIAKLKK 436


>gi|90019668|ref|YP_525495.1| Sun protein [Saccharophagus degradans 2-40]
 gi|89949268|gb|ABD79283.1| ribosomal RNA small subunit methyltransferase B [Saccharophagus
           degradans 2-40]
          Length = 445

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 116/453 (25%), Positives = 200/453 (44%), Gaps = 37/453 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N R +++  L+ V+    SL+ +LD          +  +++ L++ +   +LR  P+ID
Sbjct: 10  TNLRALAAMTLAPVISGSRSLSTILDKAL-----DAVEPKERPLMQTLCLGSLRVFPKID 64

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +   +L      +   +  L+ + + Q+ YL   D+A +   VE AK   +    +KL+
Sbjct: 65  LIARKLLQKPFKSRDNDVYALIVLGIYQMDYLRTPDHAAIGETVEAAKALNKP-WASKLI 123

Query: 125 NSILRRVSRE----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N +LR   RE    + +L   +A     P+WF + +   + ++   AI  A      I L
Sbjct: 124 NGVLRNYQREKVALQHKLNGSMAFQHAHPQWFIDLVRADWPQDW-QAILAANNQQPPITL 182

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
                  D +T    L+   +                   I +LPGF EG + VQD +A 
Sbjct: 183 RANKRHCDQKTLLEALHKAEVGAHLCEYSRDGITLEGASDIPALPGFNEGHFSVQDEAAQ 242

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLY 289
           +   L     N  VLD C+APGGK   +        +T L+    R+ ++  NL RL   
Sbjct: 243 LSASLLDLQANQRVLDCCSAPGGKAGHICEQANNIDLTCLESDASRMPRVEQNLARLGHT 302

Query: 290 AEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A+ I+E   +   +     FD +L+DAPCS+TG IRRHPD+   R   D+ K A  Q ++
Sbjct: 303 AKLIVEDANEVDSWWDGVPFDRILLDAPCSATGVIRRHPDIKLLRRPSDLAKLAQLQAQI 362

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      + PGG ++++ CS+ KQ++E +V   +         +PL++    +  +    
Sbjct: 363 LRSVWRTLAPGGKLLYATCSVLKQENENIVSHFVSE-QNDARHIPLDNNQPVTWGVERPF 421

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++ P          +G DGF+   L +
Sbjct: 422 ----GRQLFPQ--------ENGHDGFYYALLEK 442


>gi|260574499|ref|ZP_05842503.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2]
 gi|259023395|gb|EEW26687.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2]
          Length = 427

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 146/420 (34%), Positives = 211/420 (50%), Gaps = 20/420 (4%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
            +   L  +L           LS  D+   + +    LR +   D VL   L    P   
Sbjct: 25  EQGAMLGQVLAD--PAGPLTGLSPSDRARAQRLALAVLRHIEPADRVLKPHLRKEPPE-- 80

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
            +++  LR++V ++     A + VV+ AV   +  K   H A LVN++LR+V+       
Sbjct: 81  -AVRIALRLAVVELAVEHAAAHGVVNAAVSLMRLGKRTTHMAGLVNAVLRKVAEVPEPFA 139

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199
                   +P W ++ L + YG+E+V A+         ID++VK   E       A  LP
Sbjct: 140 GLPPQR--LPFWLRKPLVDTYGREQVAAMEAVQALAPPIDISVKPGAE--VAIPGAEALP 195

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
           TG +RL    + + +LPGFAEG WWVQDA+A++ V L        VLDLCAAPGGKT QL
Sbjct: 196 TGSLRLPPQVQ-VSNLPGFAEGQWWVQDAAAALAVGLLAPRPGERVLDLCAAPGGKTLQL 254

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319
             +GA+V ALD+S  RL +LR NL R  L A +++  DA  + P   FDA+L+DAPCS+T
Sbjct: 255 AAAGAQVLALDISAPRLVRLRDNLARCGL-AAEVVAADALVWQPAAAFDAILLDAPCSAT 313

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GTIRRHPD+ + +D  D+ +    Q  L+ + + ++KPGG +VF  CSL   + E  +  
Sbjct: 314 GTIRRHPDLPFVKDGSDLPQVLALQAALIDRALGWLKPGGRLVFCTCSLLPDEGEAQLAG 373

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            L   P  V   P              ++  G +R+ PD   +      GMDGFF   LR
Sbjct: 374 ALARHPGLVVERPDLPGV-----EPAWITETGGLRLRPDYWAE----RGGMDGFFMARLR 424


>gi|322515643|ref|ZP_08068621.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976]
 gi|322118294|gb|EFX90577.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976]
          Length = 435

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 206/459 (44%), Gaps = 45/459 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    N R +++ ++  V+ +  SL+ LL       A   L  +D  LV+ I     R 
Sbjct: 1   MKNKKQNTRAIAAQIILQVLDQGKSLSSLLPE-----AQTQLDPKDVPLVQEITFGICRV 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           LPR++ V+  ++   +  K   +  LL V + Q+LY+ V  +A VD  V  A +  +   
Sbjct: 56  LPRLELVIKQLVAKPIKGKTRLVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKVLKLDS 114

Query: 120 FAKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           F  L N +LRR  RE+ ++  +      ++ P+WF  R++  Y   R +  ++    P++
Sbjct: 115 FRALTNGVLRRFLREQAQILAVVDKHWQTLHPDWFVNRIKKVYPHWREIVEANNQRPPMW 174

Query: 178 IDLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           I    +                 +  N+         L E P  +  L  F +G   VQD
Sbjct: 175 IRANQQHIKAQDYAVLLGELVAKNSENSTACVPDCAILLENPVPVAKLMHFEKGWATVQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDR 285
             A    +L G  N   +LD CAAPGGKT  ++     A+V ALD+ + RL+++R NL R
Sbjct: 235 VHAQWSAELLGAKNGELILDACAAPGGKTTHILEKALQAQVIALDIEENRLKRVRENLTR 294

Query: 286 LHLYAEDIIEMD----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L   A  +I  D         P  +FD +L+DAPCS+TG IRRHPD+ W R   DI   A
Sbjct: 295 LG-QAAKVICGDASKPQEWLEPDVMFDRILLDAPCSATGVIRRHPDIKWLRKEQDIAGLA 353

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q K+L      +KP G+++++ CS+  +++E+ + + +                 K +
Sbjct: 354 ELQSKILHALWQRLKPNGVLLYATCSILPEENEQQINRFVAQ-----------QTDAKLV 402

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +M          +  P           G DGFF   L +
Sbjct: 403 EMDFNGKKTAMKQFFPQ--------EKGGDGFFYAKLVK 433


>gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis SK119]
 gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis SK119]
 gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis subsp. hominis C80]
          Length = 435

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 186/454 (40%), Gaps = 44/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   +  ++         ++          +   D+ L   +V  T++    +D  
Sbjct: 5   VRDLAFQSIQDILNDNAYSNLKINEVINQYNIATV---DKALFTELVYGTIKRKMTLDFY 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   + + +      ++QLL +S+ Q ++LD + ++A+++ AV  AKR +  +H   +VN
Sbjct: 62  LKPFVKTRIKG---WVRQLLWMSLYQYVFLDKIPNHAIINEAVNIAKR-RGGQHNGNIVN 117

Query: 126 SILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           +ILR +               QR+     IP W  E     YG E    I+ + +     
Sbjct: 118 AILRHIFKSDLPTLETIKNEKQRMTIEYSIPRWIIEHWITHYGIETTHKIAKSFLVQSAS 177

Query: 179 DLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDASA 230
            + V       ET +  L                L    + ++    F +G+  +QD S+
Sbjct: 178 TVRVNTSRTDVETISKALLQEGYHVDIDQLIPYCLHLTGKPVIESRAFKDGLISIQDKSS 237

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   L     + ++LD C+APGGK   +     S   V A D+ K ++  ++ N+ +L 
Sbjct: 238 MLVGYLMDVQKDDTILDACSAPGGKACHMAELLASTGHVDATDIHKHKIGLIKENIKKLK 297

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           L      + DA     +  +D +LVDAPCS  G ++  P++ + +  D I      Q  +
Sbjct: 298 LKNVSTFDHDATKPYSEL-YDKILVDAPCSGLGVLKHKPEIKYVQSKDSINDLVEIQLSI 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG +++S C++++ ++E V+   L+ +             ++ I   +  
Sbjct: 357 LDNVKHNLKPGGSLIYSTCTIEQMENENVIYTFLKENKDF---------EFELITHPITG 407

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++I P             DGFF   ++R 
Sbjct: 408 EKVKTLQILPQDF--------NSDGFFITKIKRK 433


>gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
 gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
          Length = 453

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 222/456 (48%), Gaps = 36/456 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            + ++ R +++ ++  V+ +  SL+ L+       A   +  +D  L++ I     R LP
Sbjct: 14  TTALSTRAMAAKVILQVLDEGKSLSTLIPE-----AQSSVKAQDLPLLQEICFGICRVLP 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R++ ++  ++   L  K   +  LL V + Q+LY+ +  +A VD  V  A +  ++  F 
Sbjct: 69  RLEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRIPAHAAVDEVVN-ATKSLKSDSFR 127

Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            LVN +LRR  RE+ ++  +      ++ P+WF  +L+  Y   R +  ++    P+++ 
Sbjct: 128 GLVNGVLRRFLREQDDILAIVDKHWQTLHPDWFVNKLKKSYPNWREIIDANNQKPPMWLR 187

Query: 180 LTVK-FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIP 233
           +  +   +ET+   L A    T      +        ++ +LP FAEG   VQD  A   
Sbjct: 188 VNTQKNSLETYRTLLAAQQTETQVTSHPQALGLTQPTAVQNLPLFAEGGVTVQDLHAQWA 247

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
             L    N+  +LD CAAPGGKT  ++     A V ALDV + RL++++ NL R+   A 
Sbjct: 248 ALLLQPQNHEVILDACAAPGGKTTHILELAPQADVMALDVEENRLQRVKENLARMQQQAT 307

Query: 292 DII--EMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +     +   +  K       FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q
Sbjct: 308 VVCGDAANPQAWLDKLGKSAVRFDRILLDAPCSATGVIRRHPDIKWLRKEADIKQLVALQ 367

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L     ++KP G+++++ CS+  +++ + +++ L+++P   +L+PL+       D+ 
Sbjct: 368 GQILDALWHYLKPNGVLLYATCSVLAEENSQQIERFLQNTP-DAQLLPLDL----PPDVL 422

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +  P +         G DGF+   L +
Sbjct: 423 ERNQSAVGFQFIPQI--------DGGDGFYYAKLVK 450


>gi|116629419|ref|YP_814591.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC
           33323]
 gi|311110932|ref|ZP_07712329.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri MV-22]
 gi|116095001|gb|ABJ60153.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC
           33323]
 gi|311066086|gb|EFQ46426.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri MV-22]
          Length = 438

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 192/457 (42%), Gaps = 45/457 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+   L  V  ++      L+ E        L   D+ L   IV  T+++   ++ 
Sbjct: 3   NARTVALETLIKVFNQKSYSNIALNNELVKH---ELKPADKALATRIVYGTIQYKIFLEY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123
            L  ++ + L      L  LL +S  Q  +L+ V   A+ D A + AK+  K+N    KL
Sbjct: 60  QLKPLIKTKLR--DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKKFAKKNSGSYKL 117

Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR      +V      L+  ++     P+W  E L + +G+++   I      P  
Sbjct: 118 VNGILRALERQGKVLPAPDNLVDYLSIKESFPKWLVEYLLDNFGEDQTKEILVRSNQPAA 177

Query: 178 IDLTVKFDIETWAHKLNAVML--------PTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + +  + + +     A+                L      +     F +G   +QDA+
Sbjct: 178 NSIRMAVEEDKFEEIKEALKKDGFDFKESCLTAHNLNLNKGGVAQTNLFKDGKITIQDAA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287
           AS+ V  F    +  VLD C+APGGKT Q+        V ALD+ + +L  ++    RLH
Sbjct: 238 ASLAVDAFKFTGDEQVLDACSAPGGKTVQIAEKLTTGNVIALDIHENKLRLVKNAAKRLH 297

Query: 288 LYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +        +DA           FD +LVDAPCS  G IRR P++   +  +DI   A  
Sbjct: 298 VSDKVKTKALDARKAQEYFTAGQFDKILVDAPCSGLGLIRRKPEIRCEKSLNDIKNLARI 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      +  GG +V+S C++  ++ E VV + L+  P   ELVP+          
Sbjct: 358 QLSILENISGLLTAGGELVYSTCTISLEEDEGVVNQFLKLHP-DFELVPVQVGKLP---- 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  +RI P         + G DGFF   L++
Sbjct: 413 -----KQNMVRIFPS--------ADGSDGFFIAKLKK 436


>gi|161507728|ref|YP_001577689.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
 gi|260101420|ref|ZP_05751657.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
 gi|160348717|gb|ABX27391.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
 gi|260084760|gb|EEW68880.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
          Length = 454

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 200/460 (43%), Gaps = 44/460 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +  +AR +S   L  V++        L+     S    LS  DQ L   IV  T+++  
Sbjct: 14  STNKSARAISLETLIKVLQNGSYSNISLNNSLKHS---DLSIADQNLATRIVYGTIQYRL 70

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L  +L + +  K   L+ LL +S+ QI++LD V + AV+D A + AK+  ++   
Sbjct: 71  FLEYQLTGLLKTKITEK--YLKPLLLMSLYQIIFLDKVPNRAVLDEANKLAKQFGKHHSS 128

Query: 121 AKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
              V + + R          ++ + ++ ++    +PEW  + L + +G ++  ++  +  
Sbjct: 129 GYRVVNGILRAFIRRGVILPDEKDTIKYLSIKESVPEWLVKYLIDNWGMQKAQSVLSSIN 188

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL-----KELPESIVSLPGFAEGVWWVQ 226
            P    + ++   D      +L           L           I     F +G   +Q
Sbjct: 189 DPAKNSVRISSLADRNKVFDQLKKEGYQPEWSNLSLNDAVLSHGGISESDLFEQGKLIIQ 248

Query: 227 DASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNL 283
           D +AS  +    F       VLD C+APGGKT Q+       VTALD+ +++L  ++ N 
Sbjct: 249 DEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQIAENIHGDVTALDIHEKKLRLVKENA 308

Query: 284 DRLH-LYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            R+H L        DA           F  +LVDAPCS  G +RR P++ +T+   D+  
Sbjct: 309 RRMHVLDKVTTKACDARKAHEIFKAGEFTKILVDAPCSGLGLLRRKPEIRYTKSLQDLRN 368

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L      +K  G +V+S CS+  +++EEVV++ LR  P   EL P + +  +
Sbjct: 369 LQKIQLTILDSISKLLKAEGELVYSTCSISMEENEEVVKRFLRIHPG-FELKPFSLSKLE 427

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                   S  G ++I PD          G DGFF    R
Sbjct: 428 --------SKTGMLKIMPD--------QDGNDGFFIAKFR 451


>gi|227833013|ref|YP_002834720.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454029|gb|ACP32782.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 531

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/468 (21%), Positives = 149/468 (31%), Gaps = 44/468 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  +L  V          L      +    LS RD      +   TLR    +DAV
Sbjct: 75  PRAVAFEVLQRVEADDAFANLTLPKAVSAN---NLSGRDAAFSTELTYGTLRSEGVLDAV 131

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       L      +   LR+   Q+LY  V  +A VD  V   +    +       N 
Sbjct: 132 IATCASRGLEAIAPDVLTALRMGTYQVLYTRVEAHAAVDTTVRLVEA-AGHEKAKGFANG 190

Query: 127 ILRRVSREKIELLQRI----------AGISIIPEWFKERLE-------------NFYGKE 163
           I+R ++R                   A     PEW                   N     
Sbjct: 191 IMRTITRTPAHEWLDKLAPQEEVAAVAFRHAHPEWIARSFGRALGLLDTGDSKLNAEQTT 250

Query: 164 RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
            +    +A      + L  +      E  A              +        SL    +
Sbjct: 251 ELERALEADSERPLVHLVARPGEISAEELALITGCEEGHYSPYAVYLEQGDPGSLEPVRQ 310

Query: 221 GVWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKR 274
            +  VQD  + +  +          +    LDLCA PGGK A +        A +D  + 
Sbjct: 311 KLAAVQDEGSQLIARAVTEAELIGEDTGRWLDLCAGPGGKAALMGAIARIEGAEVDAVEV 370

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
              +       +      +   D         FD VLVD PCS  G +RR P+  W +  
Sbjct: 371 SPHRATLVEKTVGDLPVRVHRADGRAPGLSAGFDRVLVDVPCSGLGALRRRPEARWRKTE 430

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            DI +    Q +LL   + FV+PGG+VV+S CS D +++  +V   L       E+    
Sbjct: 431 SDIAELNQLQSELLESALEFVRPGGVVVYSTCSPDLRETRGIVDAALERHGAGAEVRIEE 490

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 +     L  E   ++ P           G D  F   LRR+ 
Sbjct: 491 LDARDVLPEMGDLGSELSAQMWPH--------RHGTDAMFFAVLRRVA 530


>gi|24378967|ref|NP_720922.1| putative RNA-binding Sun protein; rRNA methylase [Streptococcus
           mutans UA159]
 gi|24376856|gb|AAN58228.1|AE014894_5 putative RNA-binding Sun protein; possible rRNA methylase
           [Streptococcus mutans UA159]
          Length = 437

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 200/451 (44%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L+ +  K       L           LSQ D+ L+  +V  TL     ++  
Sbjct: 8   ARSGALFVLTEIFDKTAYSNIALRHYLSKHK---LSQADRSLLTELVYGTLTRKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     + +  +  LL +S+ QILYLD +  +A+V+ AV+ AK    NR   KLVN
Sbjct: 65  LAHYIE-DRNKLETWIYYLLMLSLYQILYLDKIPQHAIVNEAVDLAKS--RNRGAEKLVN 121

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+  R+K           +R +    +P W  +++ + +G++R ++I  +    S  
Sbjct: 122 AVLRQFLRQKRPDITVIKRKNKRYSITYSVPVWLVKKMIDQFGEDRAISILKSLLVRSKA 181

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +     IE  A    A         L +          F +G   +QD S+ +    
Sbjct: 182 SIRVVNPDQIEVIAKATGAKKSVLSPCGLVKASGQFFDSDLFKQGKITIQDESSQLVAPT 241

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                N +VLD C+APGGK   +   ++  ++ ALD+   +L+ ++ N DRL        
Sbjct: 242 LAIKGNETVLDACSAPGGKAVHIASYLTTGQIIALDLYDHKLKLIKDNADRLKAANYIKP 301

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      Y  K  FD +LVDAPCS  G IRR PD+ + +D+ D       Q ++L  
Sbjct: 302 QKLDARKVHKYFAKDTFDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDS 361

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +K GGI+ +S C++  ++++ V+++ L   P        N    K       +  +
Sbjct: 362 VCQTIKKGGIITYSTCTIFAEENQMVLKQFLEQHP--------NFEQVKLNHKKKDIVVD 413

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G + ITP+            DGFF   ++R+
Sbjct: 414 GCLLITPEQYL--------TDGFFISQVKRI 436


>gi|331017689|gb|EGH97745.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 448

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 197/456 (43%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +           RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   L    L        +       P  + SLPGFAEG   VQD +A 
Sbjct: 174 RVNRRHHRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L
Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +
Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +   
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQ- 412

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                     P    ++     G DGF+   L ++ 
Sbjct: 413 ----------PH-GRQLLAQQGGHDGFYYAKLIKIA 437


>gi|194466505|ref|ZP_03072492.1| sun protein [Lactobacillus reuteri 100-23]
 gi|194453541|gb|EDX42438.1| sun protein [Lactobacillus reuteri 100-23]
          Length = 449

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 116/467 (24%), Positives = 194/467 (41%), Gaps = 47/467 (10%)

Query: 1   MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK+     NAR ++   L  V+         +D          L+ +D+ L   I+   L
Sbjct: 1   MKTKFQPQNARELALVALEGVVENGAYSNLQVDQLLKKYP---LADKDRRLATNIIYGVL 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
           +    ++  L+  +     R    ++ LL  ++ Q  YL  V D+AV D ++E AKR + 
Sbjct: 58  QHKLTLEYWLNGFVQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKR-RG 114

Query: 117 NRHFAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
           N    K V  +L           R+  E   R++  + +P W    L   YG+E    I 
Sbjct: 115 NPGIRKFVTGVLHAILRKGLPDLRQINERDLRLSIENSVPRWLVNELTREYGEEDTEKIL 174

Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEG 221
            +   P +  + V     D+ T    L+A  +     ++ +         I+S   F  G
Sbjct: 175 QSINEPAHQVIRVNTAKTDLPTVKQALDAAGIEYQESQVAQNALVITKGEIISSDLFKNG 234

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLE 277
              +QD SA + V+         VLD CAAPGGKT Q+          V ALD+ + ++ 
Sbjct: 235 EITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAEALADEDGHVDALDIHQHKVR 294

Query: 278 KLRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
            +  N  RL +     A  +   +       + FD +LVDAPCS  G +RR P++ +T+ 
Sbjct: 295 LIEKNARRLGVEKRVTAHALNAREVDQLFDDENFDKILVDAPCSGIGLLRRKPEIRYTKT 354

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
             D  +    Q  +L    + VK GGI+ +S C++ +Q++++ VQ  L   P    +   
Sbjct: 355 LSDSKQLHKIQLAILNAVAAKVKKGGIITYSTCTILRQENDDTVQAFLAEHPEFALVKTT 414

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +   K    +  L+      I P   +         DGFF  +L++
Sbjct: 415 TARKVKDTRHSPTLT------ILPSDFDS--------DGFFISSLKK 447


>gi|70726699|ref|YP_253613.1| hypothetical protein SH1698 [Staphylococcus haemolyticus JCSC1435]
 gi|68447423|dbj|BAE05007.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 435

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 181/454 (39%), Gaps = 44/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   +  +          ++          +S  D+ L   +V  T++    +D  
Sbjct: 5   VRELAFQTIQEIFNDYAYSNLRINEVLSTG---DVSDIDKPLYTELVYGTVKRKMTLDFY 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   + + +      ++QLL +S+ Q +YLD V ++A+++ AV  AK  +   H   +VN
Sbjct: 62  LRPFVKTKIKS---WVRQLLWMSLYQYIYLDKVPNHAIINEAVNIAK-HRGGPHNGNVVN 117

Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           +ILR + R             QR+A    IP+W  E     YG E    ++ +       
Sbjct: 118 AILRTIFRSELPSLESIKNDKQRMAVEYSIPKWIIEHWITHYGVETTRKMASSFFDQTAG 177

Query: 179 DLTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
            + V                      +       L      I+    F  G   +QD S+
Sbjct: 178 TVRVNTSKNKVEDVVSSLQSEGYEVEVDELIPYCLHLKGHPIIESSNFKNGNISIQDKSS 237

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
                L G   N  +LD C+APGGK   +         V A D+ K ++  ++ N+ +L 
Sbjct: 238 MFVGYLMGVEENDVILDACSAPGGKACHIAELLAPSGHVDATDIHKHKIGLIKENIVKLQ 297

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           L      + DA     K ++D +LVDAPCS  G +R  P++ + +   DI      Q ++
Sbjct: 298 LNNIKAFDHDATK-PYKDVYDKILVDAPCSGLGVLRHKPEIKYVQTQQDIQDLVELQLEI 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG +V+S C++++ ++E V+   L+++      +  +    + +      
Sbjct: 357 LDNVKDNLKPGGTLVYSTCTIEQLENENVIYTFLKNNKDFEFELMTHPVTGEQV------ 410

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                I+I P             DGFF   ++R 
Sbjct: 411 ---KTIQILPQDF--------NSDGFFITKIKRK 433


>gi|299783408|gb|ADJ41406.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
           fermentum CECT 5716]
          Length = 448

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 195/466 (41%), Gaps = 44/466 (9%)

Query: 1   MKSGMN----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M         AR ++   L  V          L+          LS  D+ LV A+V  T
Sbjct: 1   MTKKQAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ---LSGADRRLVTALVYGT 57

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
           L+    +D  L   +     + +  ++ LL +++ Q  YLD V ++A  D A+E AKR  
Sbjct: 58  LQHQRTLDYWLSPFIAG--KKVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRG 115

Query: 116 EN---RHFAKLVNSILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
                R    ++++ILR       +  +  QR+A  + +P+W  + L   YG  +  A++
Sbjct: 116 NPGVRRFVTGVLHAILRNGVADVEKIEDPKQRLAIQASLPDWLVDELVAQYGLAQTEALA 175

Query: 170 DACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEG 221
                P  I L V     T            +           L     +++    F  G
Sbjct: 176 KVINEPARISLRVNLAKATVEEAQALLRSAGVETKPSEVAQNGLVVTKGAVLKTAAFKNG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKL 279
           V  +QD SA + V+      +  VLD CAAPGGKT Q+    +  +V ALD+ + ++  +
Sbjct: 236 VVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAEALTDGEVYALDIHRHKVGLI 295

Query: 280 RCNLDRLHLYA-EDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N  R+ +       ++DA     +   + FD +LVDAPCS  G +RR P++ + +   
Sbjct: 296 EKNAQRMGVDDRVFARQLDARQVGQEFADQFFDQILVDAPCSGMGLLRRKPEIRYDKQLG 355

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D  +    Q  +L    + VK GGI+ +S C++ +Q+++E V + L+  P         +
Sbjct: 356 DSQRLHQIQGAILDSVATKVKKGGIITYSTCTILRQENDETVAEFLKHHPNFRLQKTTTA 415

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              K    A  L+      + P           G DGFF   L+R+
Sbjct: 416 RMLKDNRQAQTLT------LLPSDY--------GSDGFFISNLQRV 447


>gi|116333602|ref|YP_795129.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
 gi|116098949|gb|ABJ64098.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
          Length = 447

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 201/465 (43%), Gaps = 45/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M      R ++   L+ V          L+          LS  D+  V  +V  T++  
Sbjct: 1   MTKNQTPRALAVEALTRV-AGGAYSNLQLEQTLESHR---LSDVDRRFVTNLVYGTIQHQ 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    ++  L V++ Q LYLD V   A+ + A++ AK D+ +  
Sbjct: 57  LTLEYYLSKFI-KPQQKVLPWVKMTLMVALYQELYLDRVPKRAIFNEAIQLAK-DRGHEG 114

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             + V  +L  + R+         + ++R++    +P W    L+   G+++ + I    
Sbjct: 115 IRRFVTGVLHAIDRQGLPDLAQIKDPIERLSLQYSVPTWLITALQEQVGEDKTMQILATI 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP--------GFAEGVWW 224
             P    +     + T      A+      +   ++  +   L          FA+G   
Sbjct: 175 NQPAAQSIRANVAVTTAEAVQAALAAEGYQVTPSQVAANAFRLDDKAANQSALFADGAIT 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKL 279
           +QD SA +PV+         VLD CAAPGGKT Q        SG KVTALD+ +++++ +
Sbjct: 235 IQDESAMLPVEALQLRPGDQVLDACAAPGGKTTQIAAQLDAHSGGKVTALDLHEKKVKLI 294

Query: 280 RCNLDRLHLY----AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             N +RLH+     A  +      D  PKK FD +LVDAPCS  G IRR P++ + +   
Sbjct: 295 EANAERLHVTDRVDAVALDARKIDDQFPKKQFDRILVDAPCSGLGLIRRKPEIRYEKTPQ 354

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           DI +    Q  +L      +KP GI+V+S C++   +++EVV + L + P   E  P+  
Sbjct: 355 DIQQLQRVQLDILNAVSKKLKPNGILVYSTCTILDTENDEVVAQFLATHP---EFSPMRV 411

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              ++I    +      ++I PD  +         DGFF  A RR
Sbjct: 412 TTAQNIKSDRSTD---TLKIYPDDFDS--------DGFFVSAFRR 445


>gi|145637960|ref|ZP_01793600.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae PittHH]
 gi|145268851|gb|EDK08814.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae PittHH]
          Length = 450

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 216/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF ++L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+PL  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAH-ADAELLPLPVSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|223043738|ref|ZP_03613781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           capitis SK14]
 gi|222442835|gb|EEE48937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           capitis SK14]
          Length = 435

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 196/457 (42%), Gaps = 45/457 (9%)

Query: 5   MNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           MN+ R  +   +  ++ +       ++     +    ++  D+ L   +V  T++    +
Sbjct: 2   MNSVRAHAFETIQHILIEGAYSNLKINEVLSSNI---IADVDRNLFTELVYGTIKRKYTL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D +L   + + +      ++QLL +S+ Q +YLD V D+A+++ AV+ AK+   + H   
Sbjct: 59  DYILKPFVKTKIKG---WVRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGH-HNGN 114

Query: 123 LVNSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN ILR + R ++   Q       RIA    +P+W        YG      I+ + ++P
Sbjct: 115 IVNGILRSMMRSELPHFQEIKDDKKRIALEYSLPKWLVNHWVTHYGLVTTEEIAQSLLAP 174

Query: 176 LYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQD 227
           +   +         +   +KL                L    ++IV+   F +G   +QD
Sbjct: 175 VKTTVRANISRGSVDDIINKLENEGFNVEKDDILPFCLHVSGQTIVNSRAFKDGYVSIQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLD 284
            S+ +   +     +  VLD C+APGGK   +        ++ A D+   +++ ++ N+ 
Sbjct: 235 KSSMMVAHIMKLGRDDKVLDACSAPGGKACHMAEILSPEGQIDATDIHSHKIDLIKHNIK 294

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           +L L      + DA +      +D +LVDAPCS  G +R  P++ +T+  D I      Q
Sbjct: 295 KLKLDNIHAFQHDATEPYDGL-YDKILVDAPCSGLGVLRHKPEIKYTQSQDSIQSLVDLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +KPGG + +S C++++ ++E V+   L+ +    E  P            
Sbjct: 354 LQILENIKHNIKPGGTITYSTCTIEQMENENVIYTFLKQN-EEFEFEPFQHPVTGKQV-- 410

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   ++I P   +         DGFF   ++R 
Sbjct: 411 ------KTLQILPQDFDS--------DGFFITQIKRK 433


>gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016]
 gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
           MM2-3]
 gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
 gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016]
 gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
           MM2-3]
 gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
          Length = 449

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 197/467 (42%), Gaps = 47/467 (10%)

Query: 1   MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK+     NAR ++   L  V+         +D          L+ +D+ L   I+   L
Sbjct: 1   MKTKFQPQNARELALVALEGVVENGAYSNLQVDQLLKKYP---LADKDRRLATNIIYGVL 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
           +    ++  L+  +     R    ++ LL  ++ Q  YL  V D+AV D ++E AKR + 
Sbjct: 58  QHKLTLEYWLNGFIQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKR-RG 114

Query: 117 NRHFAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
           N    K V  +L           R+  E   R++  + +P W    L   YG+E    I 
Sbjct: 115 NPGIRKFVTGVLHAILRKGLPDLRQINERDLRLSIENSVPRWLVNELTGEYGEEDTEKIL 174

Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEG 221
            +   P +  + V     D+ T    L+A  +           L      I+S   F  G
Sbjct: 175 QSINEPAHQVIRVNTAKTDLPTVKQTLDAAGIEYQEGQVAQNALVITKGEIISSDLFKNG 234

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLE 277
              +QD SA + V+         VLD CAAPGGKT Q+          V ALD+ + ++ 
Sbjct: 235 EITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAETLADEDGHVDALDIHQHKVR 294

Query: 278 KLRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
            +  N  RL +     A  +   +       + FD +LVDAPCS  G +RR P++ +T+ 
Sbjct: 295 LIEKNARRLGVEKRVTAHALDAREVDQLFDDESFDKILVDAPCSGIGLLRRKPEIRYTKT 354

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            +D  +    Q  +L    + VK GGI+ +S C++ +Q++++ VQ  L   P   ELV  
Sbjct: 355 LNDSKQLHKIQLAILNAVAAKVKKGGIITYSTCTILRQENDDTVQAFLAEHP-EFELVKT 413

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +A  K  D   + +    + I P   +         DGFF  +L++
Sbjct: 414 TTAR-KVKDNRHSPT----LTILPSDFDS--------DGFFISSLKK 447


>gi|213968427|ref|ZP_03396570.1| sun protein [Pseudomonas syringae pv. tomato T1]
 gi|301384285|ref|ZP_07232703.1| sun protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060153|ref|ZP_07251694.1| sun protein [Pseudomonas syringae pv. tomato K40]
 gi|213926715|gb|EEB60267.1| sun protein [Pseudomonas syringae pv. tomato T1]
          Length = 448

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 193/455 (42%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +           RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232
           +  +        +L                         + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +L
Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +    
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQ-- 412

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                    P    ++     G DGF+   L ++ 
Sbjct: 413 ---------PH-GRQLLAQQGGHDGFYYAKLIKIA 437


>gi|270290371|ref|ZP_06196596.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
           acidilactici 7_4]
 gi|270281152|gb|EFA26985.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
           acidilactici 7_4]
          Length = 444

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 190/457 (41%), Gaps = 41/457 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   L  +  +       L+    D     LS+ D+ L+  +V   L+    ID 
Sbjct: 7   NPRDLAVDALESID-EGAYSNLELNQVIQD---ADLSEVDKHLLTELVYGVLQHRLTIDF 62

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   L     +    +  LLR ++ Q+ +LD V  +A+ +  +E AKR + +    K+V
Sbjct: 63  YLANFLQRP-EQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKR-RGSDGVRKMV 120

Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             +LR   R+         +L QR+A    +  W  ++L    G+++   I D+   P +
Sbjct: 121 TGVLRSYQRQGTPSLDSIPDLTQRLATEYSVASWIVDQLLYELGEDKCRKILDSINRPAH 180

Query: 178 IDLTVKFD-------IETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDAS 229
           + + +           ++ + + +          L+      +     F  G    QD S
Sbjct: 181 LSVRMNPIQRSTAAIRQSLSEEYDVQESLLATDGLRLQNGPGLAQSASFQAGEVIAQDES 240

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRL 286
           A +  +         VLD CAAPGGKT QL        +V A D+ + R   ++ N  R+
Sbjct: 241 AMLVGETMQLATGQKVLDACAAPGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQQNARRM 300

Query: 287 HLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           HL        DA   CP+    FD +LVDAPCS  G +RR P+  + +   D       Q
Sbjct: 301 HLTNIVTEVHDATTPCPELKEEFDCILVDAPCSGIGLLRRKPETRYLKSKKDSSDLHRVQ 360

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             +L    S +K GGI+ +S C++ +++++  + + L   P    L        K+    
Sbjct: 361 LDILDNVASMLKVGGILTYSTCTMLRKENQMTIDEFLTQHPEFELLKTQTDKKVKADRTD 420

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++L+      I PD          G DGFF   ++++
Sbjct: 421 LSLN------IYPDDF--------GSDGFFIANMKKV 443


>gi|269468281|gb|EEZ79965.1| ribosomal RNA small subunit methyltransferase B [uncultured SUP05
           cluster bacterium]
          Length = 423

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 118/451 (26%), Positives = 207/451 (45%), Gaps = 43/451 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +  N R V+   +  V+  + SL+  +              +D  L +++V  T+RF  
Sbjct: 4   TNKSNTRAVALDAICSVVLDKRSLSSFV-----------YPDQDDALAKSLVFGTIRFYH 52

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +++ ++  +L  SL ++   +  L+ +   QILY  VA +A +   V+      +     
Sbjct: 53  QLNDIVTDLLNHSLEKEDLDIHCLMLLGAYQILYSKVAIHASIFETVDTLNFLDKT-WAK 111

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDL 180
            LVN+ILR++ R+K  LL +       P W  ++++  Y  +   +   +   +P+ I +
Sbjct: 112 GLVNAILRQIDRDKDSLLAQTH--YSHPTWLVKKIKQNYPDDFEQIFTQNNTQAPMTIRV 169

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPV 234
             K  ++ +   L    + +  + +         P S+  LP F  G  +VQDASA +  
Sbjct: 170 HPKSSVDDYQQSLANENVQSNKLEITPQALILDKPMSVYDLPDFESGSCYVQDASAQLAA 229

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    NN  +LD C+APGGK   L      A + ALD S  RLE+++ N  R ++   +
Sbjct: 230 NLLDPKNNDVILDACSAPGGKATHLCELAPNATIVALDNSSERLERVKQNTQRFNIDNIE 289

Query: 293 II--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           II       D+   +LF+ +L+DAPCS+TG IRRHPD+   R   DI      Q K+L  
Sbjct: 290 IIKGNAQQQDWWDGELFNKILLDAPCSATGVIRRHPDIKLLRKPKDITNLVKLQAKILAN 349

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             S +KP G+++++ CS+ K ++E+ +   L S P   E+           ++   +   
Sbjct: 350 LWSMLKPDGVLLYATCSILKSENEDQITHFLESHPDAEEIK---------TNLDWGIDSF 400

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +  P         S   DGF+   +R++
Sbjct: 401 VGKQQLP---------SHEFDGFYYAKIRKI 422


>gi|28867419|ref|NP_790038.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|46396868|sp|Q88B41|RSMB_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|28850653|gb|AAO53733.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 448

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 193/455 (42%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +           RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232
           +  +        +L                         + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NL+RL L 
Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLERLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +L
Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +    
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQ-- 412

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                    P    ++     G DGF+   L ++ 
Sbjct: 413 ---------PH-GRQLLAQQGGHDGFYYAKLIKIA 437


>gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271]
 gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271]
          Length = 449

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 191/460 (41%), Gaps = 33/460 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K+ +NAR ++   L    R+ +     L               D  L   +VN  LRF  
Sbjct: 4   KTSINAREIALLTLVECEREEVKSEQALHRYLNKYKTAR---NDSALATELVNGILRFRQ 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ID+++       L +    L  +LR+ V Q+ YLD + D+A V   V+ A++ K  +H 
Sbjct: 61  SIDSIITAFYHHKLKKASPFLVNILRIGVYQLRYLDRIPDWAAVSQCVDLARKYKG-QHI 119

Query: 121 AKLVNSILRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           A++VN +LR V+               LQ++A  +  PEW  ER    YG++R   ++  
Sbjct: 120 ARIVNGVLRSVAANPQKTVSSLEMQNPLQQLAAATSHPEWMLERWMARYGEDRTRRVTSY 179

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAE-GVWWV 225
             +P    L +     + E          +      L      +       F   G+  V
Sbjct: 180 NNTPPLFGLRINTLKTNKEAMLKAFADASVEFIETGLPSFLLTKDFHRTEPFITLGLLTV 239

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+   ++P  L       +VLD+CAAPGGK+  L   + +  KV A+D    +   +R  
Sbjct: 240 QNPVQALPCLLLDPEEGETVLDMCAAPGGKSTFLAELMHNSGKVIAVDRYPNKCRTIRER 299

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             ++ +     I+ DA +         +L+DAPCS TG + R P++ W  + + I +   
Sbjct: 300 ASQMAISVITTIDSDARNVPAGISPAKILLDAPCSGTGVLARRPELRWKMNREKITQLVA 359

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  LL    + +  GG++V+S CS++++++   + + L+  P  +             +
Sbjct: 360 LQESLLNHAATLLPAGGVLVYSTCSIEEEENMLQIDRFLQKHPEFIAESHPRGLPGPCHE 419

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           ++            P     + G   G DG FA  LR+  
Sbjct: 420 LSG----------HPGAYLTLPGDHEGFDGGFAQRLRKQA 449


>gi|260663557|ref|ZP_05864447.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552098|gb|EEX25151.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           fermentum 28-3-CHN]
          Length = 448

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 194/456 (42%), Gaps = 40/456 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L  V          L+          LS  D+ LV A+V  TL+    +D  
Sbjct: 11  ARAIALATLDKVRTSGAYSNLQLNQALESGQ---LSGADRRLVTALVYGTLQHQRTLDYW 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN---RHFAK 122
           L   +     + +  ++ LL +++ Q  YLD V ++A  D A+E AKR       R    
Sbjct: 68  LSPFIAG--KKVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRGNPGVRRFVTG 125

Query: 123 LVNSILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           ++++ILR       +  +  QR+A  + +P+W  + L   YG  +  A++     P  I 
Sbjct: 126 VLHAILRNGVADVEKIEDPKQRLAIQASLPDWLVDELVAQYGLAQTEALAKVINEPARIS 185

Query: 180 LTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
           L V     T            +           L     +++    F  GV  +QD SA 
Sbjct: 186 LRVNRAKATVEEAQALLRSAGVETKPSEVAQNGLVVTKGAVLKTAAFKNGVVTIQDESAM 245

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           + V+      +  VLD CAAPGGKT Q+    +  +V ALD+ + ++  +  N  R+ + 
Sbjct: 246 LAVESMHLTGHERVLDACAAPGGKTVQIAEALTDGEVYALDIHRHKVGLIEKNAQRMGVD 305

Query: 290 A-EDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                 ++DA     +   + FD +LVDAPCS  G +RR P++ + +   D  +    Q 
Sbjct: 306 DRVFARQLDARQVGQEFADQFFDQILVDAPCSGMGLLRRKPEIRYDKQLGDSQRLHQIQG 365

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L    + VK GGI+ +S C++ +Q+++E V + L+  P         +   K    A 
Sbjct: 366 AILDSVATKVKKGGIITYSTCTILRQENDETVAEFLKHHPNFRLQKTTTARMLKDNRQAQ 425

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            L+      + P           G DGFF   L+R+
Sbjct: 426 TLT------LLPSDY--------GSDGFFISNLQRV 447


>gi|290581015|ref|YP_003485407.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025]
 gi|254997914|dbj|BAH88515.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025]
          Length = 440

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 200/451 (44%), Gaps = 38/451 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L+ +  K       L           LSQ D+ L+  +V  TL     ++  
Sbjct: 11  ARSGALFVLTEIFDKTAYSNIALRHYLSKHK---LSQADRSLLTELVYGTLTRKITLEWY 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     + +  +  LL +S+ QILYLD +  +A+V+ AV+ AK    NR   KLVN
Sbjct: 68  LAHYIE-DRNKLETWIYYLLMLSLYQILYLDKIPQHAIVNEAVDLAKS--RNRGAEKLVN 124

Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+  R+K           +R +    +P W  +++ + +G++R ++I  +    S  
Sbjct: 125 AVLRQFLRQKRPDITVIKRKNKRYSITYSVPVWLVKKMISQFGEDRAISILKSLLVRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +     IE  A    A         L +          F +G   +QD S+ +    
Sbjct: 185 SIRVVNPDQIEVIAKATGAKKSVLSPCGLVKASGQFFDSDLFKQGKITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                N +VLD C+APGGK   +   ++  ++ ALD+   +L+ ++ N DRL        
Sbjct: 245 LAIKGNETVLDACSAPGGKAVHIASYLTTGQIIALDLYDHKLKLIKDNADRLKAANYIKP 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D      Y  K  FD +LVDAPCS  G IRR PD+ + +D+ D       Q ++L  
Sbjct: 305 QKLDARKVHKYFAKDTFDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +K GGI+ +S C++  ++++ V+++ L   P        N    K       +  +
Sbjct: 365 VCQTIKKGGIITYSTCTIFAEENQMVLKQFLEQHP--------NFEQVKLNHKKKDIVVD 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G + ITP+            DGFF   ++R+
Sbjct: 417 GCLLITPEQYL--------TDGFFISQVKRI 439


>gi|330720125|gb|EGG98529.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium IMCC2047]
          Length = 436

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 123/462 (26%), Positives = 216/462 (46%), Gaps = 44/462 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R  ++ +L+ V++ + SL  LL          +LS +DQ L++ +     R+ 
Sbjct: 1   MSKRFNLRAHATRILTSVVKNQQSLASLLP-----YQPEILSSQDQALLQELCFGVCRWY 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R++A +D +L   L  K   ++ LL + + Q+ +  +  +A +   V QA +  +    
Sbjct: 56  QRLNAQIDMLLDKPLKAKDTDVKVLLLLGLYQLEFTRIPAHAAISETV-QACKQLKKASA 114

Query: 121 AKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           + L+N+ILRR  REK  +     ++   +   P W  +RL+  +  E    I  A     
Sbjct: 115 SGLINAILRRSQREKEAMLDSLNKKTDYLYSHPYWLIKRLKQAWP-EHWQQICAANNERA 173

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQD 227
            + L V     +   +  KLN   +        +       P ++ +LPGF +G   VQD
Sbjct: 174 PMSLRVNALRNNRADYLEKLNNANIKAQASPFSQHGINLEKPTNVETLPGFTDGQCSVQD 233

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLD 284
            +A +   L     N  VLD CAAPGGKT  L+    +   VTAL++   R +++  NL+
Sbjct: 234 EAAQLAATLLQLEPNQRVLDACAAPGGKTCHLLELQPQLASVTALELDADRAQRIHQNLE 293

Query: 285 RLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L A  +         +  ++ +D +L+DAPCS+TG IRRHPD+   R  DDI + A 
Sbjct: 294 RLQLSATVVEGDASQPNKWWDQQPYDRILLDAPCSATGVIRRHPDIKLLRRDDDITELAK 353

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      +KP GI++++ CS+  +++E+V+   L+      +++P  + +     
Sbjct: 354 LQLQILQALWPLLKPHGILLYATCSVLPEENEQVISTFLKQ-QCQAKILPFEADWGIPGA 412

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           +          ++ P           G DGF+   +++  QP
Sbjct: 413 VGR--------QLFPQ--------PQGHDGFYYARIQK--QP 436


>gi|302130426|ref|ZP_07256416.1| sun protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 448

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 193/455 (42%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +           RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232
           +  +        +L                         + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +L
Sbjct: 295 AELIAADARETAQWWEGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +    
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQ-- 412

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                    P    ++     G DGF+   L ++ 
Sbjct: 413 ---------PH-GRQLLAQQGGHDGFYYAKLIKIA 437


>gi|304384751|ref|ZP_07367097.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
           acidilactici DSM 20284]
 gi|304328945|gb|EFL96165.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
           acidilactici DSM 20284]
          Length = 444

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 189/457 (41%), Gaps = 41/457 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   L  +  +       L+    D     LS+ D+ L+  +V   L+    ID 
Sbjct: 7   NPRDLAVDALESID-EGAYSNLELNQVIQD---ADLSEVDKHLLTELVYGVLQHRLTIDF 62

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   L     +    +  LLR ++ Q+ +LD V  +A+ +  +E AKR + +    K+V
Sbjct: 63  YLANFLQRP-EQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKR-RGSDGVRKMV 120

Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             +LR   R+         +L QR+A    +  W  ++L    G+ +   I D+   P +
Sbjct: 121 TGVLRSYQRQGTPSLDSIPDLTQRLATEYSVASWIVDQLLYELGENKCRKILDSINRPAH 180

Query: 178 IDLTVKFD-------IETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDAS 229
           + + +           ++ + + +          L+      +     F  G    QD S
Sbjct: 181 LSVRINPIQRSTAAIRQSLSEEYDVQESLLATDGLRLQNGPGLAQSASFQAGEVIAQDES 240

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRL 286
           A +  +         VLD CAAPGGKT QL        +V A D+ + R   ++ N  R+
Sbjct: 241 AMLVGETMQLATGQKVLDACAAPGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQQNARRM 300

Query: 287 HLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           HL        DA   CP+    FD +LVDAPCS  G +RR P+  + +   D       Q
Sbjct: 301 HLTNIVTEVHDATTPCPELKEEFDRILVDAPCSGIGLLRRKPETRYLKSKKDSSDLHRVQ 360

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             +L    S +K GGI+ +S C++ +++++  + + L   P    L        K+    
Sbjct: 361 LDILDNVASMLKVGGILTYSTCTMLRKENQMTIDEFLTQHPEFELLKTQTDKKVKADRTD 420

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++L+      I PD          G DGFF   ++++
Sbjct: 421 LSLN------IYPDDF--------GSDGFFIANMKKV 443


>gi|298484625|ref|ZP_07002729.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160849|gb|EFI01866.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 441

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 122/455 (26%), Positives = 199/455 (43%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A++ K+      L+
Sbjct: 56  AMAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCAEKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +      +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEHWEAICAANNAHPPMILR 174

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +       + +   LN   L        +       P  + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDIV  A  Q +L
Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG++V++ CS    ++ EV++  L  +    EL     A      +  A 
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSGARELDIAGQAGQPPAGIKQA- 413

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                         ++     G DGF+   L ++ 
Sbjct: 414 -----------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|289627007|ref|ZP_06459961.1| sun protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647928|ref|ZP_06479271.1| sun protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867899|gb|EGH02608.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 441

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 121/455 (26%), Positives = 201/455 (44%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +  + +  + +   LN   L        +       P  + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHNSRDQYLELLNNAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        +LD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AADLLELAPGQRILDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDIV  A  Q +L
Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG++V++ CS    ++ EV++  L  +    EL     A      +  A 
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSGARELDIAGQAGQPPAGIKQAR 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                         ++     G DGF+   L ++ 
Sbjct: 415 G------------RQLLAQQGGHDGFYYAKLIKIA 437


>gi|227530540|ref|ZP_03960589.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349546|gb|EEJ39837.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 449

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 192/460 (41%), Gaps = 45/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR ++   L  V + +      +D          L   DQ LV  IV  TL+    ++ 
Sbjct: 8   NARELAFASLERVRKTKAYSNLQVDETLRRH---ELKPADQRLVTTIVYGTLQHQLTLEY 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L  +      +    ++ LL  +  Q  YLD V ++AV D  ++ AKR + N    K V
Sbjct: 65  WLKSLT--PGKQLDPWVETLLLTAFYQYNYLDRVPNWAVTDETIKIAKR-RGNPGIRKFV 121

Query: 125 NSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             +L                + +R++  + +P+W  E+     G +    I  A   P +
Sbjct: 122 TGVLHSALRKGVPDFSTIKPIAKRLSIEASVPQWLVEKFIEENGVQTTKKILQAINEPAH 181

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQDAS 229
           + + V      +ET   +L    + T   +     L     +IV+ P   +GV  +QD S
Sbjct: 182 VSIRVNTKKSSLETVKQQLLDEGIETAESQVAVNALVVTSGNIVNSPLLKDGVITIQDES 241

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----IVSGAKVTALDVSKRRLEKLRCNLD 284
           A + V+         VLD CAAPGGKT Q+        G KV ALD+ + ++  +  N  
Sbjct: 242 AMLAVESMDLHPQFKVLDACAAPGGKTVQIAEQLSSDQGGKVVALDIHQHKVRLIEKNAQ 301

Query: 285 RLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+ +        +      D    + FD +LVDAPCS  G +RR P++ +T+   D  + 
Sbjct: 302 RMGVEGVVKPIALDARKVNDKFADEEFDRILVDAPCSGMGLLRRKPEIRYTKTAHDSQQL 361

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L      +K GGI++FS C++  +++E  VQ+ L++ P       +     K 
Sbjct: 362 HQIQLAILNAVAPKLKKGGIIIFSTCTILTEENEHTVQEFLQAHPDFTLERTVTKRALKD 421

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +  L+      I P           G DGFF   L+R
Sbjct: 422 DRDSATLT------ILPSDY--------GSDGFFISCLKR 447


>gi|223041828|ref|ZP_03612018.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
 gi|223017397|gb|EEF15818.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
          Length = 432

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 127/456 (27%), Positives = 209/456 (45%), Gaps = 41/456 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   NAR V++H++  V+ +  SL  L+       A   +  +D  LV+ I     R L
Sbjct: 1   MKKKQNARAVAAHIILQVLDQGKSLATLIPE-----AQSQVESKDLPLVQEIAFGVCRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V   K  K +  F
Sbjct: 56  PRLENIIKQLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAAVDEVVNATKSLKLD-SF 114

Query: 121 AKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             L N +LRR  RE+  +         ++ PEW   +L+  Y   R +  ++    P++I
Sbjct: 115 RALTNGVLRRFLREQETILAKVDKHWQTLHPEWLVNKLKKAYPNWREIVEANNQKPPMWI 174

Query: 179 DLTVKFDIET---------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            +  +                +  N                S+  LP F +G   VQDA 
Sbjct: 175 RVNTQHTNRADYVGLLGDLAKNTENVTACLPDCAIALGKAVSVNQLPHFEQGWATVQDAH 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A    +L    N   +LD CAAPGGKT  ++    +  V ALD+ + RL +++ NL RL+
Sbjct: 235 AQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKENLARLN 294

Query: 288 LYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
             A  I               +FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q
Sbjct: 295 QQATVICGDASQPEQWLDNGVMFDRILLDAPCSATGVIRRHPDIKWLRKEEDIAELAALQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            K+L    + +KP GI++++ CS+  +++ + +Q+ + ++P   +L+ ++    K ++  
Sbjct: 355 SKILNALWARLKPNGILLYATCSVLPEENSQQIQQFIANTPN-AKLLEMDFHGEKVLEK- 412

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +  P           G DGFF   L +
Sbjct: 413 ---------QFFPQNY--------GGDGFFYAKLMK 431


>gi|115376613|ref|ZP_01463843.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366356|gb|EAU65361.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
           aurantiaca DW4/3-1]
          Length = 425

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 181/443 (40%), Gaps = 38/443 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           +      L  +LD    ++  R    RD  L   +   T R    +D  +       L  
Sbjct: 1   MRATDAYLNVVLDTALSEAPPR--DARDTALATELAYGTTRRQLALDYAITRFADRKLDA 58

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR------- 130
            +  +   LR+   Q+ Y  V   A V   V QA +D      A  VN+ILR+       
Sbjct: 59  MEDRVLAALRIGAYQLFYTRVPARAAVAETV-QALKDLGVGRAAGFVNAILRKLAALPGA 117

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
               + ++ + ++     P+W  ER    +G+ER  A+  A      + +         E
Sbjct: 118 PLPPEDDVAEHLSVRESHPKWLVERWLRQFGRERAEAMLVADNQTPPVVVRTNTAKVTRE 177

Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
               +   V L      +            +  + G++EG+W VQD +A +         
Sbjct: 178 ALLAQFREVGLEVQPTPVSPVGIVLPSLGRLEDVYGYSEGLWQVQDEAAQLVGVYAAIPE 237

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           N   LD+CAAPGGK         +V A+D+   +L K+     RL L +           
Sbjct: 238 NARTLDVCAAPGGKACHQAE-THEVVAMDLHANKLPKIVSEAKRLGLLSRLRAVAHDATK 296

Query: 302 CPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
              +    F AVLVDAPCS  GT+RRHP++ + R   D+ + A  QR++L      V PG
Sbjct: 297 PYDEALGEFQAVLVDAPCSGLGTLRRHPELRYRRGEADLGRLATLQRRILENCQEVVPPG 356

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G+++++ C+L+ Q+ ++ V   LRS P      P+ S     ++ A       W+R  P 
Sbjct: 357 GLLIYAVCTLEPQEGQDQVDMFLRSHPEWTAEPPVLSGVKLPMNQA-------WLRTLPG 409

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
                     G DGFFA  LR+L
Sbjct: 410 --------PEGWDGFFAARLRKL 424


>gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae L20]
 gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 432

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 206/457 (45%), Gaps = 43/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   NAR V++ ++  V+ +  SL  L+       A   L  +D  LV+ I     R L
Sbjct: 1   MKK-QNARAVAAQIILQVLDQGKSLATLIPE-----AQAKLEAKDLPLVQEITFGVCRTL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++AV+   +   L  K   +  LL V + Q+LY+ V ++A VD  V  A+  K + +F
Sbjct: 55  PRLEAVIAQAVEKPLKGKTRLVHCLLLVGLYQLLYMRVPEFAAVDEVVNAARSLKLD-NF 113

Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             L+N +LRR  REK            ++ PEWF  +L+  Y   R +  ++    P++I
Sbjct: 114 KALINGVLRRFLREKDSLLAKFDKNWQTLHPEWFVNKLKKAYPNWREIIDANNQRPPMWI 173

Query: 179 DLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
              ++                 +  N          L   P  +  L  F +G   VQDA
Sbjct: 174 RSNIQRIKPQDYRVLLGDLVAKNSENTTACVPESAILLANPVPVNKLMNFEQGWATVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286
            A     L    N   +LD CAAPGGKT  ++ +  +  V ALD+ + RL+++R NL RL
Sbjct: 234 HAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARL 293

Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              A  I       A       +FD +L+DAPCS+TG IRRHPD+ W R  +DI +    
Sbjct: 294 GQTATVICGDASKPAEWLDDGVMFDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVAL 353

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q K+L      +KP G++V++ CS+  +++ E + + + S          + A W  +D 
Sbjct: 354 QAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVASH---------SDAEWVEMDF 404

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +     +  P           G DGFF   L +
Sbjct: 405 NGEKTA--MKQFFPQ--------EQGGDGFFYAKLIK 431


>gi|295094725|emb|CBK83816.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus sp.
           ART55/1]
          Length = 445

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 185/460 (40%), Gaps = 43/460 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
              R V    L  + +        L      + F  +S++D+  +  +V        ++D
Sbjct: 3   TKTREVVLTTLLDIEKNHTFSNIALGTALRANQF--MSKQDRAYITRMVEGVTEQRIKLD 60

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +++    + + + K  ++ +LR+   ++ ++D V D A  +L+V+ A            
Sbjct: 61  YIINQFSKTKVNKCKPLIRCVLRMGTYELFFMDSVPDSAACNLSVKLAVDHGFG-SLRGF 119

Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR ++R +  +             +    +P    E L   Y  E V  I  +   
Sbjct: 120 VNGVLRNIARNRDGIKYPDKNTSPLEYYSVEYSVPVELVEILLQDYDSETVDRILGSNYE 179

Query: 175 PLYIDLTVKFDI---ETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWV 225
                + V  D    +    KL A  +            L +  + +  +PGF +G + V
Sbjct: 180 MRPTSIRVNTDRISVDEVERKLEAAGIETVRGSLNDTSLLIKGYDYVRRIPGFMDGEFVV 239

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCN 282
           QD S+ + V+  G  N   V+D+CAAPGGKT           +V + D+++ + E +  N
Sbjct: 240 QDQSSCLAVRAAGIQNGDLVVDVCAAPGGKTMYAASLAGQTGRVISRDLTENKTELIEEN 299

Query: 283 LDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           +DRL L    +   DA D         D V+ D PCS  G + R  D+ +    D I + 
Sbjct: 300 VDRLGLTNVTVEAWDARDLDENLVGKADVVIADLPCSGLGIMGRKNDIKYNVTGDSIDEL 359

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q+ +L     +VK GG +V+S C++D ++++  V+  + +     E V ++    + 
Sbjct: 360 AQLQKDILDTVSRYVKTGGTLVYSTCTIDSRENQNNVKWFVENH--DFETVSIDEIVPRH 417

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +G++ +               DGFF     R
Sbjct: 418 GG------DKGYVTLL--------QGVDECDGFFISKFVR 443


>gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
 gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
          Length = 574

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 116/479 (24%), Positives = 193/479 (40%), Gaps = 62/479 (12%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------LSQRDQILVRAIV 53
           R V+   L  + + +  +  LL+ +  DS  +               L  RD  LV  IV
Sbjct: 109 RAVAVVRLLRIEKGKAFVD-LLNEKANDSGEKEIGYVERTLGFSTRYLDDRDIRLVTVIV 167

Query: 54  NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
             T+R+   +D ++  +          +  L Q+LR+   +IL LDV  YA VD  V+ A
Sbjct: 168 AGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLDVPAYAAVDENVKLA 227

Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157
           K          +VN+ILR+              +  +     + ++ I   P W   R  
Sbjct: 228 KVALRP-GAGNMVNAILRKLVLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 286

Query: 158 NFYGKERVLAISDACISPLYIDLTVKFD----------IETWAHKLNAVMLPTGGIRLKE 207
            F+GK+  L + +   S  +  L V                         +  G +R++E
Sbjct: 287 RFHGKDEALRLMNWNNSDPHFSLRVNTSKGYTRADLVKRLESLQVHYEESVMDGFVRIQE 346

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GA 264
             ++++      +G+  VQD SA + V +       +++D CAAPGGKT  +        
Sbjct: 347 GMQAVLQAGLLKDGICAVQDESAGLVVSVVDPQPGETIVDCCAAPGGKTLFMASRLSGEG 406

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKK--LFDAVLVDAPCSSTGT 321
           K+ ALD++K RL  L        L         D   Y  +    +D VL+DAPCS  G 
Sbjct: 407 KIQALDINKGRLRILMDAAKLHGLDDIITDIHADLRLYAKETTAKYDKVLLDAPCSGLGV 466

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + +  D+ W R  +D+ +  C Q +LL      V+PGGI+++S CS+D +++E+ +   +
Sbjct: 467 LSKRADLRWNRQFEDLEELICLQDELLDSASMLVRPGGILIYSTCSIDPEENEKRIAAFV 526

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  P                     ++ EG+           +     MDG FA  L R
Sbjct: 527 QRHPEFA------PQSVCGYVPTEFITDEGFY--------SSNPTKHSMDGAFAARLVR 571


>gi|145631966|ref|ZP_01787719.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
 gi|144982380|gb|EDJ89957.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
          Length = 450

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 215/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGVSLKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 MLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+PL  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAH-ADAELLPLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|254362113|ref|ZP_04978233.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica
           PHL213]
 gi|261491771|ref|ZP_05988351.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495480|ref|ZP_05991927.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153093674|gb|EDN74629.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica
           PHL213]
 gi|261308814|gb|EEY10070.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312610|gb|EEY13733.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 448

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 218/469 (46%), Gaps = 52/469 (11%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK      +++R +S+ ++  V+ +  SL+ L+       A + L  +D  LV+ I    
Sbjct: 6   MKKQSFKALSSRAISATIILQVLDQGKSLSTLIP-----DAQKQLEPKDLPLVQEITFGV 60

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
            R LPR+++++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  +
Sbjct: 61  CRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKTLK 119

Query: 117 NRHFAKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
              F  L N +LRR  RE+ E+         ++ PEW   +L+  Y   R +  ++    
Sbjct: 120 LDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAYPNWREIVEANNQRP 179

Query: 175 PLYIDLTVKF--------------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
           P++I +  +               + E   +  N          L E   ++  LP F +
Sbjct: 180 PMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCALLLERAVNVNQLPHFEQ 239

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278
           G   VQDA A    +L G  N  +VLD CAAPGGKT         AKV ALD+ + RL +
Sbjct: 240 GWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEKAPKAKVMALDIEESRLSR 299

Query: 279 LRCNLDRLHLYAEDIIEMD----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           +R NL RL      +I  D            LFD +L+DAPCS+TG IRRHPD+ W R  
Sbjct: 300 VRENLVRLG-QIAQVICGDASKPEEWLEEGVLFDRILLDAPCSATGVIRRHPDIKWLRKE 358

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            DI + A  Q ++L      +KP GI++++ CS+  Q++ E +Q+ L+ +P   +L    
Sbjct: 359 GDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQENSEQIQRFLQDTPNAKQLE--- 415

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                     +  + E  +       ++     +G DGFF   L+++ +
Sbjct: 416 ----------IDFNGEKVL------EKQFFPQPNGGDGFFYAKLQKVAE 448


>gi|145629884|ref|ZP_01785676.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae 22.1-21]
 gi|144977738|gb|EDJ87685.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae 22.1-21]
          Length = 450

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 214/457 (46%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF ++L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGVSLKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL RL+  A  
Sbjct: 252 MLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIV 311

Query: 293 II-------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +        E  A        FD +L+DAPCS+TG IRRHPD+ W R   DI +    QR
Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQR 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+PL  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAH-ADAELLPLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|300361951|ref|ZP_07058128.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri JV-V03]
 gi|300354570|gb|EFJ70441.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri JV-V03]
          Length = 438

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 191/457 (41%), Gaps = 45/457 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+   L  V  ++      L+ E        L   D+ L   IV  T+++   ++ 
Sbjct: 3   NARTVALETLIKVFNQKSYSNIALNNELVKH---ELKPADKALATRIVYGTIQYKIFLEY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123
            L  ++ + L      L  LL +S  Q  +L+ V   A+ D A + AK+  K+N    KL
Sbjct: 60  QLKPLIKTKLR--DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKKFSKKNSGSYKL 117

Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR      +V      L+  ++     P+W  E L + +G+++   I      P  
Sbjct: 118 VNGILRALERQGKVLPSSDNLVDYLSIKESFPKWLVEYLLDHFGEDQTKEILVRSNQPAA 177

Query: 178 IDLT---VKFDIETWAHKLNAVMLPTGGIRLKELP-----ESIVSLPGFAEGVWWVQDAS 229
             +    VK   E     L           L           +     F +G   +QDA+
Sbjct: 178 NSIRMAAVKGKFEEIKTALRKDGFDFKESCLTRHNLNLSKGGVAQTSLFKDGKITIQDAA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287
           AS+ V  F    N  VLD C+APGGKT Q+        V ALD+ + +L  ++    RLH
Sbjct: 238 ASLAVDAFNFTGNEQVLDACSAPGGKTVQIAEKLTNGSVIALDIHENKLRLVKNAAKRLH 297

Query: 288 LYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +        +DA           FD +LVDAPCS  G IRR P++ + +  DDI   A  
Sbjct: 298 VSDKVKTKALDARKAQEYFTAGQFDKILVDAPCSGLGLIRRKPEIRYEKSLDDIKNLARI 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      + P G +V+S C++  ++ E VV + L+  P   +LVP+          
Sbjct: 358 QLSILENISGLLAPSGELVYSTCTISLEEDEGVVNQFLKLHP-EFDLVPVQVGKLP---- 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  +RI P +         G DGFF   L++
Sbjct: 413 -----KQNMVRIFPSV--------DGSDGFFIAKLKK 436


>gi|330993136|ref|ZP_08317074.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           sp. SXCC-1]
 gi|329759906|gb|EGG76412.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           sp. SXCC-1]
          Length = 395

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 204/414 (49%), Gaps = 23/414 (5%)

Query: 29  LDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLR 87
           LD     SA       RD+     +    LR +   + VL   L    P     ++ +L 
Sbjct: 2   LDTSLEHSAAARTAEPRDRAAAHRLAATVLRHMGTANEVLAPFLKREPPE---PVRVVLL 58

Query: 88  VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGIS- 146
           + VAQ+L+LD   +A V  +V  A+R +    FA LVN++LRRV+    + L+ +     
Sbjct: 59  IGVAQLLFLDTPPHAAVATSVALARR-RGLVPFAGLVNAVLRRVAAGGAQALEGLDQPRL 117

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +P W  +             I+ A      +DLT+              ++P G +R  
Sbjct: 118 DVPPWLWQSWGRL-----ARPIATALGHEPPLDLTI---RPGGEPPPGGELMPGGSVRFA 169

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV 266
                +  LPGFAEG WWVQD +AS+P +L        V DLCAAPGGKTAQL  +GA+V
Sbjct: 170 AGTAKVADLPGFAEGAWWVQDMAASLPARLLDVKPGERVADLCAAPGGKTAQLACAGAEV 229

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
            A++   RR+E+LR NL RL L    +I  DA  + P+   DA+L+DAPCS+TGTIRRHP
Sbjct: 230 FAIEREGRRIERLRANLARLGLGGVHVIHADAATWRPEMPLDAILLDAPCSATGTIRRHP 289

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           D +W +   DI      Q +LL      ++PGG +V++ CSL  ++ E+  +        
Sbjct: 290 DAMWIKRPRDIATMTEGQDRLLAAARDMLRPGGRLVYAVCSLQPEEGEQRARAA-----E 344

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + L+       +   +  A +PEGW+R  P ML    G   GMDGFFA    R
Sbjct: 345 ALGLIADPFTPDELAFLPQARTPEGWLRTHPGML----GARGGMDGFFAARFHR 394


>gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 432

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 206/457 (45%), Gaps = 43/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   NAR V++ ++  V+ +  SL  L+       A   L  +D  LV+ I     R L
Sbjct: 1   MKK-QNARAVAAQIILQVLDQGKSLATLIPE-----AQAKLEAKDLPLVQEITFGVCRTL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++AV+   +   L  K   +  LL V + Q+LY+ V ++A VD  V  A+  K + +F
Sbjct: 55  PRLEAVIAQAVEKPLKGKTRLVHCLLLVGLYQLLYMRVPEFAAVDEVVNAARSLKLD-NF 113

Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             L+N +LRR  REK            ++ PEWF  +L+  Y   R +  ++    P++I
Sbjct: 114 KALINGVLRRFLREKDSLLAKFDKNWQTLHPEWFVNKLKKAYPNWREIIDANNQRPPMWI 173

Query: 179 DLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
              ++                 +  N          L   P  +  L  F +G   VQDA
Sbjct: 174 RSNIQRIKPQDYRVLLGDLVAKNSENTTACAPESAILLANPVPVNKLMNFEQGWATVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286
            A     L    N   +LD CAAPGGKT  ++ +  +  V ALD+ + RL+++R NL RL
Sbjct: 234 HAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARL 293

Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              A  I       A       +FD +L+DAPCS+TG IRRHPD+ W R  +DI +    
Sbjct: 294 GQTATVICGDASKPAEWLDDGVMFDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVAL 353

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q K+L      +KP G++V++ CS+  +++ E + + + S          + A W  +D 
Sbjct: 354 QAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVASH---------SDAEWVEMDF 404

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +     +  P           G DGFF   L +
Sbjct: 405 NGEKTA--MKQFFPQ--------EQGGDGFFYAKLIK 431


>gi|330952317|gb|EGH52577.1| 16S rRNA methyltransferase B [Pseudomonas syringae Cit 7]
          Length = 441

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 125/456 (27%), Positives = 198/456 (43%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +      A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETGGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   LN   L        +       P  + SLPGFAEG   VQD +A 
Sbjct: 174 RVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L
Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDIV  A  Q  
Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGG 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                          ++     G DGF+   L ++ 
Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|197106963|ref|YP_002132340.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1]
 gi|196480383|gb|ACG79911.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1]
          Length = 598

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 153/413 (37%), Positives = 210/413 (50%), Gaps = 17/413 (4%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88
           L+      A   L+ RD+   RA+    LR L  IDA L   L    P     +Q +LR+
Sbjct: 201 LEEGLTHPALGRLAPRDRAFARALAMAALRHLGPIDAALQARLRKPPP--DRIVQ-VLRL 257

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148
             AQ+L L    +A V   V+ A   K  + F  LVN++LR +SRE  +L          
Sbjct: 258 GAAQLLVLKTPAHAAVSATVDLAASQKGGQAFKGLVNAVLRGLSREPPDLSDPDLLA--- 314

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-TWAHKLNAVMLPTGGIRLKE 207
           P+W   R    +G E   A++         D+T K   +     ++    +  GG     
Sbjct: 315 PQWLAARWRAAFGPEAARAMAAMVADEPATDVTPKDSADAEALGQMLEGRVLPGGSVRAG 374

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT 267
           L   + + PGFAEG WWVQDASA+IP +L     + + LDLCAAPGGKT QL  +GA+VT
Sbjct: 375 LKGEVQAWPGFAEGRWWVQDASAAIPARLLAVKADETALDLCAAPGGKTLQLAAAGARVT 434

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           A+D +  RL+++  NL R  L AE + + DA ++  ++ FDAVL+DAPCS+TGT RRHPD
Sbjct: 435 AVDKAAGRLKRVSENLARTGLSAEVV-QADAAEWPDRRRFDAVLLDAPCSATGTYRRHPD 493

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           VLW     DI K A  Q +LL      VK GG +V+  CSL+ ++ E  V+  L+ SP  
Sbjct: 494 VLWVASPADIPKLATLQARLLDAAARRVKAGGRLVYCVCSLEPEEGEAQVEAFLKRSP-- 551

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E  P      +      +  P G +RI P  L+       G DGFF   LRR
Sbjct: 552 -EFAPEPVEPGEGGAPEASRLPNGTLRILPHHLD------GGTDGFFIARLRR 597


>gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143]
 gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143]
          Length = 434

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 196/458 (42%), Gaps = 42/458 (9%)

Query: 1   MKSGM-NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M + + ++R  ++  L+ ++    SL+  L L       + ++++D+ L R +    LRF
Sbjct: 1   MSNTLLDSRAAAARCLAKIV-NGSSLSQQLPLL-----EQQVAEKDRSLYRQLCYGVLRF 54

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            P+++ +   ++   L  K + +  L+ + + Q+  + + D+A V   V   K  K++  
Sbjct: 55  YPKLNGIAKLLIQKPLKGKDHDVLMLVLIGIYQLSEMRIPDHAAVSTTVNATKSLKKH-W 113

Query: 120 FAKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
               VN +LR+  R + +      +A     P+W  + L   +      +I         
Sbjct: 114 AKGFVNGVLRQWQRNEQDLLTKLTVAEAQSHPQWLHDELVKAWP-AEASSIESVNNQHPP 172

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V         +  +L A  +  G     +         S+  LP F+ G   VQD 
Sbjct: 173 MCLRVNHQHSSTADYLQQLAAHGIDAGRCDFADQGIRLTNAVSVEQLPNFSAGWVSVQDE 232

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           +  +   L        VLD C APGGKT  +        ++ ALDV  +RL+K+  NL+R
Sbjct: 233 APQLSAALMALAPGQRVLDACCAPGGKTCHMLELQPQLKQLIALDVDHQRLQKVEQNLER 292

Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L A        +   +   + FD +L+DAPCS+TG IRR+PD+   R   DI + A  
Sbjct: 293 LQLKASLTHGDASEPLTWWDNQPFDRILLDAPCSATGVIRRNPDIKLHRQHSDIAQLAKL 352

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QRK+L      +KP G +V++ CS+   ++E +V            +V         ID 
Sbjct: 353 QRKILNALWLTLKPNGRLVYATCSVLPDENEIIVGDFCEQQKDAKHIV---------IDA 403

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              ++     ++ P         + G DGF+   + + 
Sbjct: 404 PWGIARPYGRQLLPQ--------NEGHDGFYYAVIEKK 433


>gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 432

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 205/457 (44%), Gaps = 43/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   NAR V++ ++  V+ +  SL  L+       A   L  +D  LV+ I     R L
Sbjct: 1   MKK-QNARAVAAQIILQVLDQGKSLATLIPE-----AQAKLEAKDLPLVQEITFGVCRTL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++AV+   +   L  K   +  LL V + Q+LY+ V ++A VD  V  A+  K + +F
Sbjct: 55  PRLEAVIAQAVEKPLKGKTRLVHCLLLVGLYQLLYMRVPEFAAVDEVVNAARSLKLD-NF 113

Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             L+N +LRR  REK            ++ PEWF  +L+  Y   R +  ++    P++I
Sbjct: 114 KALINGVLRRFLREKDSLLAKLDKNWQTLHPEWFVNKLKKAYPNWREIIDANNQRPPMWI 173

Query: 179 DLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
              ++                 +  N          L   P  +  L  F +G   VQDA
Sbjct: 174 RSNIQRIKPQDYRVLLGDLVAKNSENMTACVPESAILLANPVPVNKLMNFEQGWATVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286
            A     L    N   +LD CAAPGGKT  ++    +  V ALD+ + RL+++R NL RL
Sbjct: 234 HAQWSAALLEAQNGELILDACAAPGGKTTHILEVAPQAKVIALDIEESRLKRVRENLARL 293

Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              A  I       A       +FD +L+DAPCS+TG IRRHPD+ W R  +DI +    
Sbjct: 294 GQTATVICGDASKPAEWLDDGVMFDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVAL 353

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q K+L      +KP G++V++ CS+  +++ E + + + S          + A W  +D 
Sbjct: 354 QAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVASH---------SDAEWVEMDF 404

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +     +  P           G DGFF   L +
Sbjct: 405 NGEKTA--MKQFFPQ--------EQGGDGFFYAKLIK 431


>gi|255318029|ref|ZP_05359274.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           radioresistens SK82]
 gi|262380625|ref|ZP_06073779.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           radioresistens SH164]
 gi|255304852|gb|EET84024.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           radioresistens SK82]
 gi|262298071|gb|EEY85986.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           radioresistens SH164]
          Length = 435

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 111/453 (24%), Positives = 199/453 (43%), Gaps = 40/453 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             +N R    H L  V ++  SL+ +L+ +        ++ RD+ L   ++  TLR    
Sbjct: 9   PDLNLRAQVVHSLLAV-QQGQSLSLILNQQL-----NQVADRDRALFHELLLGTLRQWFA 62

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           + ++   +L   L      ++  L + + Q+L   +A +A +   V  A +       + 
Sbjct: 63  LKSLALPLLTKPLN--NPVVETCLYLGLYQVLCTRIAPHAAISETVT-ATKQLGFHPLSG 119

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +VN+ILRR +RE  +    +     +P W  +RL   +  E++ ++S        + L V
Sbjct: 120 VVNAILRRATRETEQFQHTLNQAHGLPSWLFKRLNKDWP-EQIQSLSQNLKQSAPLTLRV 178

Query: 183 KF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
                  E +  +L+ + +      +       +    I  LPG+ EG + VQD  A + 
Sbjct: 179 NQRKISREAYLEQLHNIQIQAHACVVSEVGIVLDQSMPIRELPGYDEGWFSVQDEHAQLS 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290
             L   LN  +V+D CAAPGGKTA        A + ALD   +RL+++  NL RL L A 
Sbjct: 239 TSLLPNLNTKTVIDACAAPGGKTAHLLEKYQPALLVALDQDPQRLKRITENLQRLDLEAG 298

Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              I   DA  + P++  D +++DAPCS+ G +RRHPD+   R   DI ++   Q+++L 
Sbjct: 299 HVQIEAGDATRWQPEQPVDCIILDAPCSAIGVLRRHPDIRLLRQPSDIAQTVDLQKRILH 358

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                +  GG +++  CS+ K ++E+ + +        VE           I     +  
Sbjct: 359 HMWQQLNVGGTLLYITCSILKVENEQQMTQFFIEHKDAVEDK---------IQADWGIEQ 409

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               ++ P             DGF+   ++++ 
Sbjct: 410 LYGRQLLP--------EPGHGDGFYYCRIKKVA 434


>gi|169333678|ref|ZP_02860871.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259672|gb|EDS73638.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM
           17244]
          Length = 450

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 100/466 (21%), Positives = 204/466 (43%), Gaps = 41/466 (8%)

Query: 1   MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M   +    +R+ +  +LS V+         L             + D+ L   IV+  +
Sbjct: 1   MAKNIKISPSRVSAYKVLSEVLMTGAYSNIALTKHLASIKI----EADRRLCTNIVHGVI 56

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
           + + +++ VL  +  + +      ++  L + + QI+YL+ + +YA+V+ +V   K    
Sbjct: 57  KKINKLEYVLSTLSNTPVNELDERVKISLYIGLYQIIYLNKIPEYAIVNDSVNLVKMFVG 116

Query: 117 NRHFAKLVNSILRRVSREKI--------ELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
            +  +  VN ILR   R+K         +    +           E+L   Y KE ++  
Sbjct: 117 -KKASGFVNGILRNALRKKHELKEIEFSDFFDIMYYEYGFKRALSEKLLLSYSKEELIEY 175

Query: 169 SDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAE 220
           +   I P  + L V     + E   ++            + E  E     ++  L  + +
Sbjct: 176 AKYSILPPNVTLRVNKLKTNREELKNRFKEKGFEVRDTFVPEGIEVLSHLNVTLLEEYKK 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G++ +QD +  +         ++ VLD+CAAPGGK+      + +   + + D+  ++LE
Sbjct: 236 GLFSIQDCAGMVVAHSLDVKEDMKVLDMCAAPGGKSMHTSELMNNSGDIVSCDIYTKKLE 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            +   + +L +      ++D   +    +  FD ++ D PCS  G IRR P++L     +
Sbjct: 296 IMNFRMKQLGINNIMTKKLDGTIFNECYMNTFDRIICDVPCSGLGVIRRKPEILIYYSNE 355

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I +    QR++L  GI ++K GG++++S C+++K+++E++V  +L+     ++L  +N 
Sbjct: 356 KIEELKKVQRQILENGIRYLKKGGVLIYSTCTINKEENEDIVYSILKEH-EDIKLNEINL 414

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +    D A A   EG +         I G  + +D FF   L ++
Sbjct: 415 PFEFDYDKAKA--KEGIL--------NISGDKNNIDSFFIAKLTKI 450


>gi|190576005|ref|YP_001973850.1| putative sun protein [Stenotrophomonas maltophilia K279a]
 gi|190013927|emb|CAQ47567.1| putative sun protein [Stenotrophomonas maltophilia K279a]
          Length = 443

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 123/456 (26%), Positives = 192/456 (42%), Gaps = 40/456 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G   R++++ +L+ V  +  SL   L       A      RD+ L+ A+    LR   
Sbjct: 13  APGAATRMLAARVLAQVFTRGRSLKAELAWALPKLA----DSRDRALLEALCFAVLRRRS 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             DA L   +   L  +   L+ LL V  AQ+  L++  +A +   V+ A+     R  A
Sbjct: 69  TYDAALQAWMQKPLSARDADLRTLLMVGFAQLDVLELPAHAALSATVDAARALGRERQ-A 127

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN+ILRR  RE +            PEW  + +E  +   +  AI  A + P  + L 
Sbjct: 128 GLVNAILRRAQREGVPEQPA---RDAFPEWLADAIERDWP-AQAEAIFSASLQPAPLWLR 183

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
                   +     L    +      L         P ++  LPGF +G   VQD SA  
Sbjct: 184 ANRQHGGRDKALTTLAEAGIAAEATALCADALRLATPVAVNQLPGFGDGALSVQDLSAQC 243

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHL-- 288
                       VLD CAAPGGK+A L+      ++ ALD+  RRL + R    R  +  
Sbjct: 244 AADALAPATGARVLDACAAPGGKSAHLLERDPSLRLLALDIDARRLARARDTYTRTGVGE 303

Query: 289 --YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                     D   +     FDA+L+DAPCS+TG IRR PDV++ R  +D+      Q +
Sbjct: 304 HAQTLVADASDPGSWWDGVPFDAILLDAPCSATGVIRRQPDVMFHRRAEDVDALVGVQAR 363

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL    S ++PGG+++++ CS+ + ++ + V+  L+  P  V          + +  A  
Sbjct: 364 LLEACWSMLRPGGVLLYATCSILRAENIDQVRAFLKWHPDAV---------AQPLGDAFG 414

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +  EG  R       +     +  DGFF   L +  
Sbjct: 415 VDCEGVAR-------QRLPGDNDADGFFYARLIKAA 443


>gi|38233907|ref|NP_939674.1| hypothetical protein DIP1321 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200168|emb|CAE49849.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 485

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 102/454 (22%), Positives = 157/454 (34%), Gaps = 37/454 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  ++  V          L      S    LS RD      +   TLR    +D V
Sbjct: 50  PRSVAFWVIQRVEIDAAYANLTLPKVLKQSK---LSGRDAAFATELTYGTLRTQGVLDTV 106

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       L   K  ++  LR+   Q+LY  V  +A VD  V   +   ++R     VN 
Sbjct: 107 IAECSSRELEALKPEVRAALRLGAYQLLYTRVGAHAAVDTTVRIMEAIGQDR-AKGFVNG 165

Query: 127 ILRRVSREKIELLQR----------IAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           +LR +SR   +              IA     P W         G   + A   A     
Sbjct: 166 VLRTISRTSPQSWIEKLTPSGEVESIAFQHAHPAWIARSFSQIVGMNELEAALSADSERP 225

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
            + L  +      E  A  +           +        +L    EG+  VQD  + + 
Sbjct: 226 KVHLVARPGEMSAEELALIVGGDEGKYSPYAVYLESGDPGALEPVREGLAAVQDEGSQLI 285

Query: 234 VQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH 287
            +               LDLCA PGGK A L        A  D  +    + +   + + 
Sbjct: 286 ARAVTEAPIHGEDQGKWLDLCAGPGGKAALLGAIARIDGATVDAVEVSKHRAKLIENIVR 345

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +   D         +D VLVDAPCS  G +RR P+  W +   DI +    Q +L
Sbjct: 346 GLPVKVTVGDGRSPGLAPGYDRVLVDAPCSGLGALRRRPEARWRKQETDIEELTKLQSQL 405

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L   +  V+ GGIVV+S CS D +++ ++V ++LRS  +            + +      
Sbjct: 406 LESALRLVRTGGIVVYSTCSPDLRETRQIVDRILRSHEVE------ELNAAELVPSMENT 459

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                + + P           G D  F   LR+ 
Sbjct: 460 GEYKSVHMWPH--------RHGTDAMFFAVLRKK 485


>gi|309751781|gb|ADO81765.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2866]
          Length = 450

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 216/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAITDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    + +               ++  LP F EGV  VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGVVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL RL+  A  
Sbjct: 252 MLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+PL  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLPLPVSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|332139428|ref|YP_004425166.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549450|gb|AEA96168.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 439

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 186/461 (40%), Gaps = 46/461 (9%)

Query: 1   MKS-----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           MK        N R   + ++  ++ +  S    L+           + RD   ++ +   
Sbjct: 1   MKPLPLPKQKNLRADCAWVIYQILEQGKSSRECLERVQRRH-----NARDNAWLQEMSLG 55

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R LP +   L  +L   L   K  ++ L+ + + Q+ +  V+++A V   V  A    
Sbjct: 56  VMRRLPLLQHWLRALLDRPLKGNKKVIEHLILLGLYQLNFSRVSNHAAVGETVAAA-SYL 114

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIA--GISIIPEWFKERLENFYGKERVLAISDACI 173
                  LVN++LR   RE +           S +P+W  + +E  YG      +     
Sbjct: 115 NAAGLKGLVNAVLRNFQRENLADKPVDDAIINSGLPKWLYKAIEQAYG-AEADNVRAETN 173

Query: 174 SPLYIDLTV---------KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +   I L V           +    A     +        +    E I  LPGF +G + 
Sbjct: 174 AMAPIWLRVNRQQVSFSAFTEALDKAEVKYTLSESHRNAIVLSQREDITGLPGFEKGHFA 233

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRC 281
           VQD +A +         N  +LD CAAPGGKT  ++          ALD    RL+++  
Sbjct: 234 VQDGAAQLAAHYLQPQANERILDCCAAPGGKTGHIVECAPDTEYVLALDADATRLKRVEE 293

Query: 282 NLDR--LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           N+ R    +        +   +   K FD +L+DAPCS+TG IRRHPD+ W R  +DI  
Sbjct: 294 NMTRLQHKVDIRQGDAANPESWWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDN 353

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR++L      +KPGG ++++ CS+  +++   +Q+ L  +P    L P+      
Sbjct: 354 LAQLQRRILDTLWGLLKPGGTLLYATCSILPKENMAQIQQFLADTP-DASLSPILKTETP 412

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +ITP   +        MDGF+   L +
Sbjct: 413 DKP---------GRQITPGEQQ--------MDGFYYARLVK 436


>gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
           thermophilum H-6-12]
 gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
           thermophilum H-6-12]
          Length = 430

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 99/450 (22%), Positives = 174/450 (38%), Gaps = 39/450 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  RL ++ +L  + ++   L  LL           LS +++  +  +V    R+   +D
Sbjct: 1   MEVRLKAAEILYDLEKREAYLNLLLRSRLPSY---NLSLKEKHFITELVYGVTRWKTTLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRD-KENRHFAK 122
            +    +           + LLR+    I +L D      V+  VE AKR   +      
Sbjct: 58  YIWSRFVKR--DNLSLFGRILLRLVAYHIYFLKDTILPIAVNEIVEIAKRKVPKEAKLIN 115

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            V+  + +        L        IPE+  E  +++ GK   + I         I + V
Sbjct: 116 AVSRRMVKERNNLDLNLIPFHIRYAIPEFIFEEWQDYIGKGEAVKILGWLNKAHNIAIRV 175

Query: 183 KF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDASASIP 233
                 +E    KL    +      L                  F  G + +Q  ++ +P
Sbjct: 176 NTLKISVEDLKEKLKERGIKFKDGNLVTQALLIEDGFDFEKSDLFHNGYFVIQSEASMLP 235

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             +        V+DLC+APG K+  L   + +  K+ ++D++K R++ +  N  RL +  
Sbjct: 236 ALILNPEPGSRVIDLCSAPGLKSTHLAELMNNKGKIVSVDINKNRVKLVEENAKRLGISI 295

Query: 291 EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            + +  D  +        FD VL+DAPCS  G I   P++ W    +DI K +  Q K+L
Sbjct: 296 IETLAEDVLNLPDSLNGTFDRVLLDAPCSGLGVISHKPEIKWRLKREDIYKLSEMQIKML 355

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    +K GG +V+S C++   ++E VV   L  +P   +L+       K         
Sbjct: 356 ERAGKLLKKGGRMVYSTCTITWHENENVVLYFLERNP-EFKLIDFFYKGEKFP------- 407

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             G +R+ P   +         DGFF   +
Sbjct: 408 --GIMRVIPYKYK--------TDGFFISLI 427


>gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
 gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
          Length = 447

 Score =  229 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 112/463 (24%), Positives = 191/463 (41%), Gaps = 42/463 (9%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    N R ++  LL  + +        L+     S    L +RD  L+  IV   ++ 
Sbjct: 1   MKKLNRNPRFLAVKLLERIEKNGSYSNLALNQTIKKSQ---LDERDVSLLTNIVYGVIQR 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              ++  LD  + +   + +  + +LL+ ++ Q LYLD +   AV +  +E AK    + 
Sbjct: 58  KLTLEFYLDGFIKNR-RKVEPWVYELLKTALYQQLYLDKIPKRAVFNETIEIAK-VNGHE 115

Query: 119 HFAKLVNSILRRVSREKIELLQR-------IAGISIIPEWFKERLENFYGKERVLAISDA 171
              + V  IL  + R+ +            I+  S  P+W  E+L    G E+ +++  +
Sbjct: 116 GIRRFVTGILHEIERKGLPDPGNVKDSAEKISIESSTPKWLVEKLTEELGFEKTISLLKS 175

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLP--------TGGIRLKELPESIVSLPGFAEGVW 223
              P    + V     T    ++A+              + L+     I     +  G+ 
Sbjct: 176 INEPPAQSIRVNLAKNTVHQAVSALEKEGFKVSKSLVSPLGLRVSGGFIPQSDAYKRGLV 235

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRC 281
            VQD SA + V      +   VLD CAAPGGKT Q+       +V ALD+   ++  +  
Sbjct: 236 TVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVLDSGRVYALDIHAHKVGLIEK 295

Query: 282 NLDRLHLY----AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           N +   +     A+      A +   ++ FD VL+DAPCS  G +RR P+V + +   D 
Sbjct: 296 NAELCGVTKYVTAKKTDARKAKEEFDEESFDKVLIDAPCSGLGLMRRKPEVKYDKHFKDS 355

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           +     Q  +L Q    VKPGG + +S C++  ++++  V   L+  P   ++    S  
Sbjct: 356 LSLHDVQVGILDQVAELVKPGGRLTYSTCTILNEENQATVDAFLKRHPEFYQIKTETSFK 415

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            K     + L+      I PD          G DGFF   L +
Sbjct: 416 IKDERKTLGLT------IYPDDF--------GSDGFFIATLMK 444


>gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
           FSL S4-120]
 gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
           FSL S4-120]
          Length = 400

 Score =  229 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 113/415 (27%), Positives = 190/415 (45%), Gaps = 40/415 (9%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLA 107
           +  +V  T +    +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A
Sbjct: 2   LTELVYGTTQRKITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEA 58

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFY 160
            + AK D  ++   K VN +LR V R+         + +Q+IA  + +PEW  +R  + Y
Sbjct: 59  GDIAK-DLGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQY 117

Query: 161 GKERVLAISDACISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESI 212
           G E++  I  A +   +  + V       E    +LN               L     S+
Sbjct: 118 GLEKLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGISVTRNEFIDEALLVEKGSV 177

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
                + +G   +QD S+ +        +NL+VLD CAAPGGKT      +     V AL
Sbjct: 178 AETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHAL 237

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHP 326
           D+ +++ + +     RL L       +DA         + FD +LVDAPCS  G +RR P
Sbjct: 238 DIHEKKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKP 297

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           D+ + +   DI K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P 
Sbjct: 298 DIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP- 356

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             ++ P+        +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 357 EFKIEPV-----VLPEKLAQIKKDDYIQLLPTDI--------GSDGFFVSSLRKV 398


>gi|167855267|ref|ZP_02478036.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853631|gb|EDS24876.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 432

 Score =  229 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 127/458 (27%), Positives = 211/458 (46%), Gaps = 42/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R V++ ++  V+ +  SL+ L+       A   L  +D   V+       R L
Sbjct: 1   MKKH-STRAVTAQIILQVLDQGKSLSTLIPE-----AQSQLDSKDLAWVQETTFGICRVL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++A++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V   K  K +  F
Sbjct: 55  PRLEAIIKLLVEKPLKNKTRLVHCLLLVGLYQLLYMRVPPHAAVDEVVNSTKVLKLD-SF 113

Query: 121 AKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             L N +LRR  RE+  +         ++ PEW   +L+  Y   R +  ++    P++I
Sbjct: 114 RALTNGVLRRFLREQEAILAKVDKHWQTLHPEWLVNKLKQAYPNWREIVDANNQKPPMWI 173

Query: 179 DLTVK-FDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            +  +  +   +   L         A         L +   S+  LP F +G   VQDA 
Sbjct: 174 RVNAQRTNRADYVALLGDLAKNHKEATACVPDCAVLLDKAVSVSQLPHFKQGWVAVQDAH 233

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A    +L    N   +LD CAAPGGKT  ++    +  V ALD+ + RL +++ NL RL+
Sbjct: 234 AQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLVRVKENLARLN 293

Query: 288 LYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
             A  I              ++FD +L+DAPCS+TG IRRHPD+ W R  +DI + A  Q
Sbjct: 294 QTATVICGDASQPEQWLTSGEMFDKILLDAPCSATGVIRRHPDIKWLRKEEDIAELAELQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            K+L    + +KP G+++++ CS+  +++ + +Q  L  +P   +LV +N          
Sbjct: 354 GKILKALWARLKPNGVLLYATCSVLPEENSQQIQHFLAQTP-EAKLVEIN---------- 402

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +  E  +      +++      G DGFF   L +  
Sbjct: 403 --VGGEQCL------MKQFFPKQDGGDGFFYAKLVKQA 432


>gi|224500053|ref|ZP_03668402.1| hypothetical protein LmonF1_10399 [Listeria monocytogenes Finland
           1988]
          Length = 399

 Score =  229 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 114/414 (27%), Positives = 188/414 (45%), Gaps = 40/414 (9%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108
             +V  T +    +D  L   L          ++ LLR+SV Q+ YLD V ++A+++ A 
Sbjct: 2   TELVYGTTQRKITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 58

Query: 109 EQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYG 161
           + AK    ++   K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG
Sbjct: 59  DIAKNM-GHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYG 117

Query: 162 KERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIV 213
            E++  I  A +   +  + V       E    +LN   +        E        S+ 
Sbjct: 118 IEQLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVA 177

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALD 270
               + +G   +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD
Sbjct: 178 ETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALD 237

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           + +++ + +     RL L       +DA         + FD +LVDAPCS  G +RR PD
Sbjct: 238 IHEKKTKLIDEAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPD 297

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + + +   DI K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P  
Sbjct: 298 IKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-E 356

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             L P+        +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 357 FTLEPV-----VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 397


>gi|260753395|ref|YP_003226288.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552758|gb|ACV75704.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 468

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 144/439 (32%), Positives = 216/439 (49%), Gaps = 24/439 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R  +  LL  V+R+ + L  ++               D+ LV A+    LR+   +
Sbjct: 45  GLPVRKAALQLLEAVLRQGLPLEQVIGRITQGLKQN----ADRALVHALAAAVLRWCHDL 100

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D ++D      L       + +LR+++AQ L L    +  +   +     D   R     
Sbjct: 101 DQLIDSATAKPLAP-DVKARMVLRMALAQKLVLKQPAHVAIATVLPLV--DGGPRRLVHG 157

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           V   L R     +           +P+    R E  +G+  + A S A      +DLT+K
Sbjct: 158 VYGSLDRREGVALPEY------PTLPDETAYRWEKAWGEPMLAAASRALAEQPPVDLTLK 211

Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              ET  W  KL+   L  G IRL E    I  L G+ +G WWVQD SAS+  +L G   
Sbjct: 212 NPEETAFWQEKLSGESLFAGHIRLPEGHPPIAELAGYQDGAWWVQDISASLAARLLGKGE 271

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           N ++LDLCAAPGGKT QL   G +VTA+D++ +RL +L  NL R+ L AE +   D  DY
Sbjct: 272 NRTILDLCAAPGGKTMQLASQGWQVTAVDIAAKRLTRLHDNLKRMGLSAEVV-TADLADY 330

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            PK+  DA+L+DAPCS++G  RRHPDVL+   +  I   A  Q+KLL +   +VK GG +
Sbjct: 331 TPKEAVDAILLDAPCSASGIFRRHPDVLYRVSSRIITDMAEQQKKLLHRASQWVKKGGKL 390

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ CSL+ ++ E V++  L           ++S   +++   ++ S EGW+RI P+ L 
Sbjct: 391 VYAVCSLEPEEGEAVIRDFLAHHSDYR----IDSLEKETLPAGLSPSEEGWLRILPENLA 446

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +      G DGFF     R
Sbjct: 447 E----KGGNDGFFIAYFTR 461


>gi|56550913|ref|YP_161752.1| Fmu (Sun) domain-containing protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542487|gb|AAV88641.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 468

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 217/439 (49%), Gaps = 24/439 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R  +  LL  V+R+ + L  ++               D+ LV A+    LR+   +
Sbjct: 45  GLPVRKAALQLLEAVLRQGLPLEQVIGRITQGLKQN----ADRALVHALAAAVLRWCHDL 100

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D ++D      L       + +LR+++AQ L L    +  +   +     D   R     
Sbjct: 101 DQLIDSATAKPLAP-DVKARMVLRMALAQKLVLKQPAHVAIATVLPLV--DGGPRRLVHG 157

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           V   L R     +           +P+    R E  +G+  + A S A      +DLT+K
Sbjct: 158 VYGSLDRREGVALPEY------PTLPDETAYRWEKAWGEPMLAAASRALAEQPPVDLTLK 211

Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              ET  W  KL+   L  G IRL E    I  L G+ EG WWVQD SAS+  +L G   
Sbjct: 212 NPEETAFWQEKLSGESLFLGHIRLPEGHPPIAELAGYQEGSWWVQDISASLAARLLGKGE 271

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           N ++LDLCAAPGGKT QL   G +VTA+D++ +RL +L  NL R+ L AE +   D  DY
Sbjct: 272 NRTILDLCAAPGGKTMQLASQGWQVTAVDIAAKRLTRLHDNLKRMGLSAEVV-TADLADY 330

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            PK+  DA+L+DAPCS++G  RRHPDVL+   +  I+  A  Q+KLL +   +VK GG +
Sbjct: 331 TPKEAVDAILLDAPCSASGIFRRHPDVLYRVSSRIIIDMAEQQKKLLHRASQWVKKGGKL 390

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ CSL+ ++ E V++  L           ++S   +++   ++ S EGW+RI P+ L 
Sbjct: 391 VYAVCSLEPEEGEAVIRDFLAHHSDYR----IDSLEKETLPAGLSPSEEGWLRILPENLA 446

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +      G DGFF     R
Sbjct: 447 E----KGGNDGFFIAYFTR 461


>gi|70733533|ref|YP_257172.1| sun protein [Pseudomonas fluorescens Pf-5]
 gi|68347832|gb|AAY95438.1| sun protein [Pseudomonas fluorescens Pf-5]
          Length = 441

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 122/455 (26%), Positives = 199/455 (43%), Gaps = 35/455 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L ++        +  RD+   + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALTAVLNGKASLNSSLPIQL-----DKVEARDRGFTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+LY  V  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLLYARVPAHAAIGETVGCADKLKKP-WAKALL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LRR  RE      EL       +  P W ++ L+ F+  +   +  ++    P+ + 
Sbjct: 115 NAVLRRAQRESETLLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232
           +  +        KL +         +             + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHHSRDAYLKLLSEAGVAAKACVYSQDGIVLDEALDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLY 289
             +L        VLD C APGGKT  ++        V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AAELLELAPGQRVLDACCAPGGKTCHILEVQPALAGVVAVDLEAKRLVRVRENLDRLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        D   +   K F  +L+DAPCS+TG IRRHPD+  TR  +DI   A  Q +L
Sbjct: 295 AQLIAADGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPEDIAALAQLQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GGI++++ CS    ++ EV++  L  +P   EL         +  +    
Sbjct: 355 LDAMWQALEVGGILLYATCSTLPTENTEVIEAFLARTPGARELDIGGQLGQPAAGLKQ-- 412

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                    P    ++     G DGF+   L ++ 
Sbjct: 413 ---------PH-GRQLLAQEGGHDGFYYAKLIKIA 437


>gi|238852568|ref|ZP_04642978.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri 202-4]
 gi|238834714|gb|EEQ26941.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           gasseri 202-4]
          Length = 438

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 191/457 (41%), Gaps = 45/457 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR V+   L  V  ++      L+ E        L   D+ L   IV  T+++   ++ 
Sbjct: 3   NARTVALETLIKVFNQKSYSNIALNNELVKH---ELKPADKALATRIVYGTIQYKIFLEY 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123
            L  ++ + L      L  LL +S  Q  +L+ V   A+ D A + AK+  K+N    KL
Sbjct: 60  QLKPLIKTKLR--DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKKFAKKNSGSYKL 117

Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN ILR      +V      L+  ++     P+W  E L + +G+++   I      P  
Sbjct: 118 VNGILRALERQGKVLPAPDNLVDYLSIKESFPKWLVEYLLDNFGEDQTKEILVRSNQPAA 177

Query: 178 IDLTVKFD---IETWAHKLNAVMLPTGGIRLKELP-----ESIVSLPGFAEGVWWVQDAS 229
             + +  +    E     L           L           +     F +G   +QDA+
Sbjct: 178 NSIRMAVEEGKFEEIKEALKKDGFDFKESCLTAHNLNLNKGGVAQTNLFKDGKITIQDAA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287
           AS+ V  F    +  VLD C+APGGKT Q+        V ALD+ + +L  ++    RLH
Sbjct: 238 ASLAVDAFKFTGDEQVLDACSAPGGKTVQIAEKLTTGNVIALDIHENKLRLVKNAAKRLH 297

Query: 288 LYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +        +DA           FD +LVDAPCS  G IRR P++ + +  +DI   A  
Sbjct: 298 VSDKVKTKALDARKAQEYFTAGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLARI 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      +  GG +V+S C++  ++ E VV + L+  P   ELVP+          
Sbjct: 358 QLSILENISGLLTAGGELVYSTCTISLEEDEGVVNQFLKLYP-DFELVPVQVGKLP---- 412

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  +RI P         + G DGFF   L++
Sbjct: 413 -----KQNMVRIFPS--------ADGSDGFFIAKLKK 436


>gi|118602253|ref|YP_903468.1| sun protein [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567192|gb|ABL01997.1| 16S rRNA m(5)C-967 methyltransferase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 421

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 203/453 (44%), Gaps = 43/453 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M + +  R ++   +  V+  + SL+          AF      D  L++++V  T+RF 
Sbjct: 1   MANNI-TRFIALEAIYSVIINKKSLS----------AFNYPKDNDTPLIKSLVFGTIRFY 49

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ ++   L  S  ++   +  L+ +   Q+LY  +A +A +   V       +    
Sbjct: 50  HQLNDIVSKRLKHSFKKEDLDVHCLMLLGAYQLLYSKIAIHASIFETVNVVNALNKP-WA 108

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYID 179
             LVN+ILR++ R+K  L Q++      P W  ++++  Y  +   +   +   +P+ I 
Sbjct: 109 KALVNAILRKIDRDKKILQQQVH--YSHPSWLVKKIKRDYPNDFETIFKQNNTQAPMTIR 166

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233
           +    +++ +  +L    + +  + +           ++ +L  F +G  +VQDASA + 
Sbjct: 167 VHTSLNLDHYQQQLQQEGISSQKLAITPQALVLDKATTVFNLVKFEQGACYVQDASAQLS 226

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
           V L    N   +LD C+APGGK   L       KV ALD   +RL K+  N  RL +   
Sbjct: 227 VPLLNPKNTDLILDACSAPGGKATHLCELAPQCKVIALDNDNKRLIKISQNAQRLKITNI 286

Query: 292 DII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             I       D+   +LFD +L DAPCS+TG IRRHPD+   R   DI      Q+ +L 
Sbjct: 287 QTILGSAQNQDWWDSQLFDKILFDAPCSATGVIRRHPDIKLLRKPKDITTLVVLQKNILE 346

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                +KP GI++++ CS+ K ++E+ ++  L +     E+          I++   ++ 
Sbjct: 347 NLWQMLKPSGILLYATCSILKVENEQQIKYFLNTHYDAKEIK---------IELDWGINT 397

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +  P         +   DGF+   + +L 
Sbjct: 398 TVGRQQLP---------TDNFDGFYYAKIIKLT 421


>gi|256847372|ref|ZP_05552818.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716036|gb|EEU31011.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 447

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 193/467 (41%), Gaps = 47/467 (10%)

Query: 1   MKSGMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M + +    R ++   L  V ++       L+          L + D+ LV  +V   L+
Sbjct: 1   MNNSIQNSPRNLALETLDKVFQRGSYSNLQLNETLKRHQ---LKEVDKRLVTTLVYGVLQ 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
               ++  L  ++          ++ LL +S  Q  ++D + ++A  D A++ AK  + N
Sbjct: 58  HKLTLEYWLTPLVKRDP---DSWVKTLLMLSFYQYQFMDRIPEWAATDEAIKIAK-WRGN 113

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISI-------IPEWFKERLENFYGKERVLAISD 170
               K V  +L    R+       IA           IPEW    L + YG+E+V  +  
Sbjct: 114 PGIRKFVTGVLHSFLRQGPADPLEIADSIKRLSIIGSIPEWLVRCLLHQYGQEQVEKLVR 173

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGV 222
               P  + L V     T    +  +                L     ++++   FA G+
Sbjct: 174 QINEPSRVSLRVNTARTTVQEAIQTLANEQIDVQQSKVAQDGLVVQSGNVLTSAAFANGM 233

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEK 278
             +QD SA + V+      +  VLD CAAPGGKT Q+      +  +V ALD+ + ++  
Sbjct: 234 VTIQDESAMLAVEALQLRGDERVLDACAAPGGKTGQIAAALDPAMGQVDALDIHQHKVRL 293

Query: 279 LRCNLDRLHLYA-EDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           +R N++RL +       ++DA         + FD +LVDAPCS  G IRR P++ + + +
Sbjct: 294 IRKNMERLGVANRVVARQLDARQVDDYFTDESFDKILVDAPCSGIGLIRRKPEIRYDKTS 353

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
               +    Q  +L      VK GGI+V+S C++ ++++E  +Q  L   P    L    
Sbjct: 354 STSSRLHEIQGTILNAVAPKVKKGGIIVYSTCTILQEENENTIQTFLAHHPNFQLLKTQT 413

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +   K+         +  + I P           G DGFF   L+R+
Sbjct: 414 ARAIKANRQ------QKTLTILPSDY--------GSDGFFIGTLQRI 446


>gi|241762323|ref|ZP_04760403.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373117|gb|EER62756.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 468

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 217/439 (49%), Gaps = 24/439 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R  +  LL  V+R+ + L  ++               D+ LV A+    LR+   +
Sbjct: 45  GLPVRKAALQLLEAVLRQGLPLEQVIGRITQGLKQN----ADRALVHALAAAVLRWCHDL 100

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D ++D      L       + +LR+++AQ L L    +  +   +     D   R     
Sbjct: 101 DQLIDSATAKPLAP-DVKARMVLRMALAQKLVLKQPAHVAIATVLPLV--DGGPRRLVHG 157

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           V   L R     +           +P+    R E  +G+  + A S A      +DLT+K
Sbjct: 158 VYGSLDRREGVALPEY------PTLPDETAYRWEKAWGEPMLAAASRALADQPPVDLTLK 211

Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              ET  W  KL+   L  G IRL E    I  L G+ EG WWVQD SAS+  +L G   
Sbjct: 212 NPEETAFWQEKLSGESLFLGHIRLPEGHPPIAELAGYQEGAWWVQDISASLAARLLGKGK 271

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           N ++LDLCAAPGGKT QL   G +VTA+D++ +RL +L  NL R+ L AE +   D  DY
Sbjct: 272 NRTILDLCAAPGGKTMQLASQGWQVTAVDIAAKRLTRLHDNLKRMGLSAEVV-TADLADY 330

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            PK+  DA+L+DAPCS++G  RRHPDVL+   +  I+  A  Q+KLL +   +VK GG +
Sbjct: 331 TPKEAVDAILLDAPCSASGIFRRHPDVLYRVSSRIIIDMAEQQKKLLHRASQWVKKGGKL 390

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ CSL+ ++ E V++  L           ++S   +++   ++ S EGW+RI P+ L 
Sbjct: 391 VYAVCSLEPEEGEAVIRDFLAHHSDYR----IDSLEKETLPAGLSPSEEGWLRILPENLA 446

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +      G DGFF     R
Sbjct: 447 E----KGGNDGFFIAYFTR 461


>gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
           CF48-3A]
 gi|300909760|ref|ZP_07127221.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           reuteri SD2112]
 gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
           CF48-3A]
 gi|300893625|gb|EFK86984.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           reuteri SD2112]
          Length = 449

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 200/467 (42%), Gaps = 47/467 (10%)

Query: 1   MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK+     NAR ++   L  V+         +D          L+ +D+ L   I+   L
Sbjct: 1   MKTKFQPQNARELALVALKGVVENGAYSNLQVDQLLKRYP---LADKDRRLATNIIYGVL 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
           +    ++  L+  +     R    ++ LL  ++ Q  YL  V D+AV D ++E AKR + 
Sbjct: 58  QHKLTLEYWLNGFVQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKR-RG 114

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGIS-------IIPEWFKERLENFYGKERVLAIS 169
           N    K V  +L  + R+ +  L++I            +P W    L   YG+E    + 
Sbjct: 115 NPGIRKFVTGVLHAILRKGLPDLRQIDERDLRLSIENSVPRWLVNELTREYGEEDTEKVL 174

Query: 170 DACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEG 221
            +   P +  + V     D+ T    L+A  +     ++ +         I+S   F  G
Sbjct: 175 QSINEPAHQVIRVNIVKTDLPTVKQTLDAAGIEYQESQVAQNALVITKGEIISSDLFKNG 234

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLE 277
              +QD SA + V+         VLD CAAPGGKT Q+          V ALD+ + ++ 
Sbjct: 235 EITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAEALTNEDGHVDALDIHQHKVR 294

Query: 278 KLRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
            +  N  RL +     A  +   +       + FD VLVDAPCS  G +RR P++ +T+ 
Sbjct: 295 LIEKNARRLGVEKRVTAHALDAREVDQLFDDESFDKVLVDAPCSGIGLLRRKPEIRYTKT 354

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            +D  +    Q  +L    + VK GGI+ +S C++ +Q++++ VQ  L   P   ELV  
Sbjct: 355 LNDSKQLHKIQLAILNAIAAKVKKGGIITYSTCTILQQENDDTVQAFLAEHP-EFELVKT 413

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +A  K  D   + +    + I P   +         DGFF  +L++
Sbjct: 414 TTAR-KVKDNRHSPT----LTILPSDFDS--------DGFFVSSLKK 447


>gi|314933391|ref|ZP_07840756.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           caprae C87]
 gi|313653541|gb|EFS17298.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           caprae C87]
          Length = 435

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 100/454 (22%), Positives = 195/454 (42%), Gaps = 44/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +   +  ++ +       ++     +    ++  D+ L   +V  T++    +D +
Sbjct: 5   VRAHAFETIQHILNEGAYSNLKINEVLSSNI---IADVDRNLFTELVYGTIKRKYTLDYI 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   + + +      ++QLL +S+ Q +YLD V D+A+++ AV+ AK+   + H   +VN
Sbjct: 62  LKPFVKTKIKG---WVRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGH-HNGNIVN 117

Query: 126 SILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            ILR + R  +   Q       RIA    +P+W        +G E+   I+ + ++P+  
Sbjct: 118 GILRSLMRSDLPDFQEIRDDKKRIAIEYSLPKWLVNHWVTHHGLEKTEEIAQSLLAPVKS 177

Query: 179 DLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDASA 230
            +         +    KL                L    ++IV+   F +G   +QD S+
Sbjct: 178 TVRANISRGSVDDIVTKLENEGFNVEKDDILPFCLHVSGQTIVNSRAFKDGYVSIQDKSS 237

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   +     +  VLD C+APGGK   +        +V A D+   +++ ++ N+ +L 
Sbjct: 238 MMVAHIMKLGRDDKVLDACSAPGGKACHMAEILSPEGQVDATDIHLHKIDLIQHNIKKLK 297

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           L      + DA +   K+++D +LVDAPCS  G +R  P++ +T+  D I      Q ++
Sbjct: 298 LDNIHAFQHDATE-PYKEMYDKILVDAPCSGLGVLRHKPEIKYTQTQDSIQSLVDLQLQI 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K GG + +S C++++ ++E V+   L+ +    E  P               
Sbjct: 357 LENIKHNIKSGGTITYSTCTIEQMENENVIYTFLKQN-EEFEFEPFQHPVTGKQV----- 410

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++I P   +         DGFF   ++R 
Sbjct: 411 ---KTLQILPQDFDS--------DGFFITQIKRK 433


>gi|302341793|ref|YP_003806322.1| sun protein [Desulfarculus baarsii DSM 2075]
 gi|301638406|gb|ADK83728.1| sun protein [Desulfarculus baarsii DSM 2075]
          Length = 443

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 114/459 (24%), Positives = 186/459 (40%), Gaps = 40/459 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +  +L  +      L  LL   +          RD+ +   + +  LR    +D
Sbjct: 1   MNPRLTALDVLVQLESSPKHLDKLLSRAFQRHPAAQ--ARDKAMATNLTHTVLRHRAWLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +L  ++   L +    ++  LR+  A+++ L    +A V   VE  K     +  + LV
Sbjct: 59  HLLTPLVSRPLAKLDAPVRAALRLGAAELVVLATPAHAAVGATVEAVKAGPAAK-ASGLV 117

Query: 125 NS---------ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N               +    + L R+      P W  E L   +G E+  A + A  S 
Sbjct: 118 NGVLRALTRALPAAAQAEPPGDELDRLCLRHSHPRWLLEPLARRFGLEQAAAWAQANQSQ 177

Query: 176 LYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
             + L V             +      + A  L    + ++     +  LPGF EG+W  
Sbjct: 178 PPLCLRVNALKASPAQVAESLAPVCEAVEAHALAPEALIVRGAAGPLWDLPGFREGLWQA 237

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           QDA A    +L G    ++VLDLCA  GGK+  L   + +  ++ A+D S  RLE L  N
Sbjct: 238 QDAGAQALGRLLGVGPGMTVLDLCAGAGGKSGHLAALMANQGRIVAVDDSAGRLEALAEN 297

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           + RL +   + +  D   +      F+A+LVDAPCS  G I R PD+ W R   D    A
Sbjct: 298 MARLGVTIVEPVLADGAAWDGGGRLFEAILVDAPCSGLGVIGRRPDIRWRRSPADSAAMA 357

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  L       + PGG +V+  C++ + ++E V + +L + P       L  ++  + 
Sbjct: 358 RIQLALARNAARLLAPGGALVYCTCTVAEAENEGVARALLAARPE------LRPSWAGAE 411

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +  +G+ R  P  +          D FFA  L +
Sbjct: 412 AAGEMIGADGFWRSFPRPMAA--------DSFFAARLVK 442


>gi|315656712|ref|ZP_07909599.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492667|gb|EFU82271.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 520

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 107/475 (22%), Positives = 181/475 (38%), Gaps = 47/475 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+   L  V +       +L      +    L +RD      +V  TLR   R DA
Sbjct: 45  PARDVAFQALRRVDQDHAYANLVLPGLIERAR---LHRRDAAFATELVYGTLRLQGRYDA 101

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++  +    +      L  +LR+ + QIL + V DYA VD  V+ A RD+ +   A +VN
Sbjct: 102 IIGLLSDRDIAALDPELVTVLRMGIHQILQMRVEDYAAVDTMVDLA-RDRLSAGPAGMVN 160

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169
           ++LR+V+   +                 +     PEW    L +           +  + 
Sbjct: 161 AVLRKVTEHDLSYWLDAITSGLTGEKALSRAFSYPEWIVWALRDALVATGRDAGELPGLL 220

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220
            A   P Y+ L  +  + +      A                  +         L     
Sbjct: 221 HAQNRPAYVTLCARPGLISADELATAAETYLDADTRLGELSDCAVVLSGGDPRRLRAVER 280

Query: 221 GVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272
           G+  V+D  + +  ++           + +DLCA PGGKTA            V A +VS
Sbjct: 281 GLAGVEDEGSQLVAKVLAAAPVTGVERTWVDLCAGPGGKTALLAGLARSRDVSVIANEVS 340

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             R E +R +          +++ D  D+        D VLVDAPCS  G++RR P+  W
Sbjct: 341 PHRAELVRDSTKAFTDQIVQVLQGDGRDFGGLHPGKADRVLVDAPCSGLGSLRRRPEARW 400

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            +   D+      Q+ LL   +  VKPGG+V ++ CS    ++ +VV+  +++      L
Sbjct: 401 NKSATDLKDLTALQQDLLRSALETVKPGGVVGYATCSPHLAETRQVVETTVKNRADLRVL 460

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                A    ++    L P  ++++ PD          G D  F   +++    +
Sbjct: 461 DAPAVAREIIVNSEHDLGPGPYLQLWPD--------RDGTDAMFLALIQKKSPTE 507


>gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes 1816]
          Length = 399

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 114/414 (27%), Positives = 189/414 (45%), Gaps = 40/414 (9%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108
             +V  T +    +D  L   L          ++ LLR+SV Q+ +LD V ++A+++ A 
Sbjct: 2   TELVYGTTQRKITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 58

Query: 109 EQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYG 161
           + AK D  ++   K VN +LR V R+         + +Q+IA  + +PEW  +R  + YG
Sbjct: 59  DIAK-DLGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYG 117

Query: 162 KERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIV 213
            E++  I  A +   +  + V       E    +LN   +        E        S+ 
Sbjct: 118 IEKLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVA 177

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALD 270
               + +G   +QD S+ +        +NL+VLD CAAPGGKT      +     V ALD
Sbjct: 178 ETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALD 237

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           + +++ + +     RL L       +DA         + FD +LVDAPCS  G +RR PD
Sbjct: 238 IHEKKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPD 297

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + + +   DI K A  Q  +L      VK  GI+V+S C++DK+++E V++  L   P  
Sbjct: 298 IKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-E 356

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             L P+        +    +  + +I++ P  +        G DGFF  +LR++
Sbjct: 357 FTLEPV-----VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 397


>gi|78212348|ref|YP_381127.1| sun protein [Synechococcus sp. CC9605]
 gi|78196807|gb|ABB34572.1| sun protein [Synechococcus sp. CC9605]
          Length = 445

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 200/465 (43%), Gaps = 59/465 (12%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R ++  +L  V          L+    +   R L   D+ LV  +    +R    +
Sbjct: 11  GLLPRRLAWDVLQAV-AAGAYADVALERVLRE---RDLKPSDRGLVTELAYGAIRQRRTL 66

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
           DA LD +      ++   L+ LL V + Q+L +  + D A V+ AVE AK  K     A 
Sbjct: 67  DAWLDRLGKVPALKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAVELAKTSKGLARLAP 126

Query: 123 LVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +VN +LR            +   +L  ++A    +P+WF + L  + G E   A++ AC 
Sbjct: 127 VVNGVLRAALRAREAGETLQLPNDLPAQLALAHSLPDWFTQLLIEWRGVEGAAAVASACN 186

Query: 174 SPLYIDL----------TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
               +DL           V+ D+        +++    G+R+      +   PG+AEG W
Sbjct: 187 RVPDLDLRVNRLRSSPAQVQQDLAAAGISSESIVGCPDGLRISGHSGDLRHWPGYAEGHW 246

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLR 280
            VQD SA     +        +LD CAAPGGK   L       A++ A+D S  RL+++ 
Sbjct: 247 CVQDCSAQWIAPVLDPKPGDRILDACAAPGGKATHLAELVGDQAEIWAVDRSAGRLKRVA 306

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            N  RL L + + +  DA +   ++      F  +L+DAPCS  GT+ RHPD  W     
Sbjct: 307 ANAARLGLASINALAADAANLLEQRPQWRESFQRILIDAPCSGLGTLARHPDARWRVTPQ 366

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I      Q+ LL   +  + P G++V++ C++   +++  +Q +L+  P          
Sbjct: 367 SIRGLLPQQQALLDGLLPLLAPQGVLVYATCTIHPDENQAQIQALLKRHP---------- 416

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      L  E   ++ PD        +SG DGF++  L+R
Sbjct: 417 ----------TLRLEQESQLWPD-------QASGGDGFYSAVLQR 444


>gi|66043288|ref|YP_233129.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
           syringae B728a]
 gi|63253995|gb|AAY35091.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 448

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 199/456 (43%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   L+   L        +       P  + SLPGFAEG   VQD +A 
Sbjct: 174 RVNRRHHRRDQYLELLDTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L
Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLDGVVAVDLEAKRLVRVRENLDRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +
Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                          ++     G DGF+   L ++ 
Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|146278958|ref|YP_001169117.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557199|gb|ABP71812.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 422

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 140/439 (31%), Positives = 219/439 (49%), Gaps = 32/439 (7%)

Query: 4   GMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           GM   AR ++  LL  V+ +R  L+  +               ++   + +    LR L 
Sbjct: 13  GMADEARGMAVALLDAVLGERRLLSQAV------GELPSAGPAERARAQRLALTALRHLD 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +L   L  + P    +++ +LR++V ++     A + VV+ AV+ A+R +  +H A
Sbjct: 67  PADRLLSPHLRKAPP---LTVRNILRLAVVEMAVEGAAPHGVVNAAVDLARRGRRTQHLA 123

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LR+++      L        +P W ++ L   +G+  V AI     +   +DLT
Sbjct: 124 GLVNAVLRKIAPASFAGLP----AQRMPMWLRQPLVRRWGRGVVAAIEAVQAAAPPLDLT 179

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
            K         L               P  + +LPGF  G WWVQDA+A++ V+L     
Sbjct: 180 AKPGRIAPGEPLPTGSFRL------REPGQVSALPGFEAGDWWVQDAAAALAVRLLDPQP 233

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              + DLCAAPGGKT QL  +GA+VTALD+S+ RL +LR NL R  L AE +        
Sbjct: 234 GERIADLCAAPGGKTLQLAAAGAEVTALDLSEPRLVRLRENLARTGLQAEVV--AADLLA 291

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FDAVL+DAPCS+TGTIRRHPD+ + +D  ++      Q  +L + +  +KPGG +
Sbjct: 292 WEGGPFDAVLLDAPCSATGTIRRHPDLPFVKDGSELPALVALQSAMLDRALGMLKPGGRL 351

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VF  CSL +++ E  +  +L   P  + + P + A  +       + PEG +R+ PD   
Sbjct: 352 VFCTCSLLEEEGEAQLSALLERHP-ALRVEPPSLAGIE----PGWVGPEGGLRLRPDHWA 406

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +      GMDGF+ V +R+
Sbjct: 407 EA----GGMDGFYMVRVRK 421


>gi|302186426|ref|ZP_07263099.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
           syringae 642]
          Length = 441

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 196/456 (42%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   LN   L        +       P  + SLPGF EG   VQD +A 
Sbjct: 174 RVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFTEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT   +    +   V A+D+  +RL ++R NLDRL L
Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHFLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +
Sbjct: 294 DAELIAADARETTQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +   
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQT 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                          ++     G DGF+   L ++ 
Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
 gi|169293384|gb|EDS75517.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
          Length = 481

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/450 (23%), Positives = 195/450 (43%), Gaps = 52/450 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +L     +   L   L+    +S    LS+ D+ LV  IV  T++ +  ++  
Sbjct: 66  AREVALEILLKYHNEHSYLNITLNEYLKNS---TLSRNDKDLVTRIVYGTVQNMIYLEYQ 122

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L+  + +   + K   + +L +S+ Q+++LD V +YA++D AV+ AK+  +N +  K VN
Sbjct: 123 LEPYIKN--KKVKSREKMILLMSLYQLIFLDKVPEYAIIDEAVKLAKK--KNFYAGKFVN 178

Query: 126 SILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +ILR   R     ++        +  +  P W  +     Y  E    I     +P    
Sbjct: 179 AILRNYLRNGKRKIETKDELEKLSIETSHPLWLVKMFTKQYDYETAKKICIHDNTPPGRT 238

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
             V     +  T   +            L     +I     F EG+  +QD S+ +   L
Sbjct: 239 ARVNTLKTNKNTLLKEGCFENGNLAPDALLYNAGNIAESTYFKEGLVTIQDESSQLVAPL 298

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                +  VLD+C APG KT  L   + +  K+ A D+ + +++ ++ NL RL++   ++
Sbjct: 299 LSPSEDDLVLDMCCAPGSKTTHLAALMNNKGKIIACDLFEHKIKLVKENLKRLNISNVEL 358

Query: 294 IEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             +DA     K     FD +L+DAPCS  G ++R P++ +   +  +      Q KLL  
Sbjct: 359 HAIDATTLKEKYLEGTFDKILLDAPCSGLGVMKRKPEIKYHDSSV-MDTIIPLQAKLLDN 417

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +K  G +V+S C+++K+++E++++K L   P    +                    
Sbjct: 418 AYYLLKNNGKMVYSTCTINKKENEQMIKKFLDKYPDMKIVEE------------------ 459

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +I P + +         DGF+   L +
Sbjct: 460 --RKILPFVYDS--------DGFYMCKLEK 479


>gi|90415406|ref|ZP_01223340.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium
           HTCC2207]
 gi|90332729|gb|EAS47899.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium
           HTCC2207]
          Length = 439

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 215/457 (47%), Gaps = 37/457 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R+  + +++ V+ +  SL+ LL           + ++D  L + +   TLR+ P I+
Sbjct: 1   MNTRVAVAEVIAQVL-RGKSLSALLPEYASK-----VVEKDVGLFKQLCFGTLRWYPAIE 54

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +L  ++   +  K++ +Q LL   + Q+++  +AD+A ++  V    + K       LV
Sbjct: 55  LLLQELMQKPMREKEFEIQGLLACGLYQLMHTRIADHAAINETVTAVTKLKRP-WAKGLV 113

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R++ EL  ++A   +     P+W    L   +G    + +  A      + L
Sbjct: 114 NAVLRNFLRQRTELETKLAKNPVFVRAHPQWLLNDLFTSWGSAVAIDVLAANNEQAPMTL 173

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASAS 231
            V       + +  +L+A  +     +        +    + +LPG+  G   VQD +A 
Sbjct: 174 RVNQLQGSRDEYLQQLSAADIRAQTTQFSEQGIQLQSAIDVATLPGWDSGAVSVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHL 288
           +   L     +  VLD C APGGKT  ++ +  ++    A+++  RR+ ++  NL RL L
Sbjct: 234 LTAALLELEPDQQVLDACCAPGGKTCHILETQPQLSKLVAVELESRRMPRVEENLRRLGL 293

Query: 289 YAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A+ ++       D+   K F  +L+DAPCS++G IRRHPD+   R T DIVK A  Q +
Sbjct: 294 KADLVVNDASATADWWDGKPFQRILLDAPCSASGVIRRHPDIKLLRKTTDIVKLAELQLQ 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      +  GGI++++ CS+  Q++++V++  L  +     L   ++A   SI+    
Sbjct: 354 LLHSLWQTLDEGGILLYATCSVLPQENDQVIETFLAET----SLATTSAAELYSIEAEWG 409

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  ++ P           G DGF+   LR+  Q
Sbjct: 410 TKTAFGRQLFP--------KIDGNDGFYYSRLRKTSQ 438


>gi|148826743|ref|YP_001291496.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae PittEE]
 gi|148716903|gb|ABQ99113.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae PittEE]
          Length = 451

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 215/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF ++L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
            ++ + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NLQKNALETYRALLEEQGISAKTSHHPNALYLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +    ALDV   RL+++  NL RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLARLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEISKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q+ L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAH-ADAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix]
 gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix]
          Length = 451

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 128/451 (28%), Positives = 194/451 (43%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +      V+ +  SLT  ++      A   L+ RD   V+A+   TLR+ P++ A+
Sbjct: 19  PRQRALEAAEGVVLQGHSLTRAVE-----HATEGLNARDAAWVQALAYTTLRWYPQLSAL 73

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           ++  L   L +K   +  LL   +A++++    D+A V    E A+          L+N+
Sbjct: 74  VNGFLERPLRKKDAVIGVLLAQGLAELMHFSTRDHAAVRETAELARAIHRP-GAVGLINA 132

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLT 181
           +LRR  RE+      + +  A    +PEW  E +   +  +    +  A       + + 
Sbjct: 133 VLRRAQREQDALEAAVREDPALRFAVPEWLLETIRASWPDDWETLLEAATRPAPMTLRVN 192

Query: 182 V-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPV 234
           + +   E     L A   P       E       P  +  LPGFAEG   VQDASA    
Sbjct: 193 LSRTSREEALQALVAAGHPAQAHPQLEAALTLDEPADVAQLPGFAEGRLSVQDASAQWAA 252

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYA- 290
            L        VLD CAAPGGKT  L+       ++TALD    RL ++R NLDRL   A 
Sbjct: 253 VLLDPQPGERVLDACAAPGGKTGHLLERAGGDLQLTALDSDAERLVQVRENLDRLGFAAQ 312

Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                  D   +   + FDA+L+D PCS+TG IRRHPD+   R  DDI + A  Q ++L 
Sbjct: 313 LTAADVADPDAWWDGRPFDAILLDVPCSATGVIRRHPDIKTLRRADDIPRLAAEQARILE 372

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                ++PGG ++++ CSL  ++++ VV   L   P    L P                 
Sbjct: 373 AAWGLLRPGGRLLYATCSLLSEENDAVVAGFLERMPDARALEP----EGGPPIAGAHARS 428

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            GW          +     G DGF+   L +
Sbjct: 429 VGW---------ALPLGLEGGDGFYYALLTK 450


>gi|315497067|ref|YP_004085871.1| sun protein [Asticcacaulis excentricus CB 48]
 gi|315415079|gb|ADU11720.1| sun protein [Asticcacaulis excentricus CB 48]
          Length = 464

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 145/440 (32%), Positives = 218/440 (49%), Gaps = 23/440 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+ AR+ +  L+   + KR             + F  LS+ ++    A+  + LR L ++
Sbjct: 42  GIAARVAAITLVEAALEKRSGFDEA----AASADFLKLSETERAFAGALALLVLRRLGQL 97

Query: 64  DAVLDFVLISSLPRKKY-SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           D V+         +    +++QLLR+ +AQI ++ V D+A V   V+ A+R+ + R F  
Sbjct: 98  DHVI----HKKTQKMPPEAVRQLLRIGMAQIFFMQVPDFAAVSTTVKIAERENKTRPFKG 153

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           L+N+ILR + R+          +  +P+W  +R    YG+E    ++         DL+ 
Sbjct: 154 LINAILRGLIRDGKLSDVNPKRL--VPDWLWQRWVQTYGEENAAGMASVLTEEPATDLSF 211

Query: 183 --KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
               D +  A  L    +         L   +     +  G WWVQD +A+ PV L G L
Sbjct: 212 RNPTDRDGLAEALQGEAVGP-VNLRSSLRGDLRQWADYDAGKWWVQDIAAATPVNLLGDL 270

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           N  + LD+CAAPGGKT QLI  GA+  A+D SK RL+++  NL R+ + AE I   DA  
Sbjct: 271 NGKTALDVCAAPGGKTLQLIAKGAQTVAIDRSKNRLKRVEDNLKRIGMSAE-IHNADAST 329

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           +   + FD VLVDAPCS+TGT RR PDVLW     D+ K A  Q +LL      VKPGG 
Sbjct: 330 FDDPRAFDVVLVDAPCSATGTYRRQPDVLWATRPADVAKLADVQHRLLDALAPRVKPGGD 389

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
            ++  CSL++++ E  +   LR +     LV   +     I  A + +PEGW+R+ P   
Sbjct: 390 FLYCTCSLEREEGETQILAFLRRNK-DFTLVKHTADQHPDIP-AASFAPEGWLRLLPHQ- 446

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   G DGFF   L+R
Sbjct: 447 -----RKGGQDGFFVAHLKR 461


>gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
 gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
          Length = 437

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 116/464 (25%), Positives = 189/464 (40%), Gaps = 60/464 (12%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +G   R  S  +L  V    I     L+    +  F  L   D   +  +    +R+ 
Sbjct: 1   MATGYLQRKASWEILLKV-SSGIYSDHALEKVLKNYEFNSL---DIAFITELSFGCIRYR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  +D +   S  ++   L+ LL + + Q+L +D +   A +   VE AKR    + 
Sbjct: 57  KFLDTWIDHISKLSHQKQPPKLRWLLHIGLYQLLKMDKIPFPAAISSTVEVAKRTDL-KG 115

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN+ILR   R                  + +  +P W    + N+ G +    I  
Sbjct: 116 LAGTVNAILRNTVRNIERDNCPKISTDEMEKLSCLESLPLWLVTEIVNWVGIKEAKNIFK 175

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAE 220
           A      IDL +     +      +LN   +    I        L   P SI +LPG+ +
Sbjct: 176 AFNKKPTIDLRINSLKTNFNKILKELNECNIQAEPINQLNNGVALNSNPRSIKNLPGYKD 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G+W VQD S+     L        +LD C+APG KT  L   +   A++ A+D S++RL+
Sbjct: 236 GLWVVQDRSSQWVAPLLNPKKGEKILDACSAPGSKTTHLAALVNDDAEILAVDRSEKRLK 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTR 332
            L+ NL+RL++ +   +E DA      K      FD +L+DAPCS  GT  R+PD  W+ 
Sbjct: 296 ILQSNLERLNIKSVKTLEADATTLIDIKPNLASYFDKILIDAPCSGIGTFARNPDTRWSL 355

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D I +    Q  LL      +K  G +V+S C++   ++  ++++ L  +        
Sbjct: 356 SKDKINQLIILQEGLLDSIFPLLKKNGTLVYSTCTICPDENNLLIRRFLSKNKE------ 409

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
                         L  +   +I P   +         DGF+A 
Sbjct: 410 --------------LKLDSERQILPRFDKP-------GDGFYAA 432


>gi|51243976|ref|YP_063860.1| SUN protein (Fmu protein) [Desulfotalea psychrophila LSv54]
 gi|50875013|emb|CAG34853.1| related to SUN protein (FMU protein) [Desulfotalea psychrophila
           LSv54]
          Length = 454

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 210/465 (45%), Gaps = 34/465 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+   +R +++  L  V +K+  +  +L+        + L+ R++ L   +V   LR  
Sbjct: 1   MKTS--SRYIAAETLCQVYKKQQPVKPILEKLCQ---QKQLNPRERSLAMNMVFGVLRKR 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L  +    L +    + Q L V + Q+ +LD + + A+V+ AV   K  K ++ 
Sbjct: 56  QYLDILLRKLSTVRLKKLDPFVHQALTVGLYQLFFLDSIPESAIVNEAVNSCKTAKVHKR 115

Query: 120 FAKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
               VN ILR  +R+K      + ++   I   P    +R +  +G E+   I +     
Sbjct: 116 LHGFVNGILRNATRQKEALANGMKEQEQEIHTTPSGLFKRWQERFGLEKARYICEINGEE 175

Query: 176 LYIDLTVK---FDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQ 226
             + L V      I+ +   L    +          + +++    I  +PG+ +G++ VQ
Sbjct: 176 PPLTLRVNSTKTSIDDFEALLTREGITGTRGPAPESLIIEDYQGLIGDIPGYKDGLFQVQ 235

Query: 227 DASASIPVQLFGT-LNNLSVLDLCAAPGGKTAQLIVSGAKV----TALDVSKRRLEKLRC 281
           D++A +   L     +    LD CA  GGKT+ +I  GA       A++   +R EK   
Sbjct: 236 DSAAQLASLLLLPIKSGGHYLDACAGLGGKTSHIIQLGADKEIKVIAVEPDAKRKEKFIT 295

Query: 282 NLDRLHLYAE---DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           N++RL  + E       +  F     + FD +LVDAPCS TG IRR PD+ W R  +D +
Sbjct: 296 NIERLFTHHEVELHPTSLQEFKASNTQAFDGILVDAPCSGTGVIRRQPDIRWNRKEEDFL 355

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           +    Q ++L      + P GI+V++ CSL+ +++E++++K L   P    L    +   
Sbjct: 356 QKQIIQLEILSLAAEMLAPTGILVYATCSLEIEENEDLIKKFLLLFPDFY-LTDCQNYLP 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           + +   +  + +G      D        S  +DGFFA  L R  +
Sbjct: 415 EEVGEHIRPAKDG------DGSFFAPLPSKRLDGFFAARLARRDK 453


>gi|227878882|ref|ZP_03996787.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
           JV-V01]
 gi|227861516|gb|EEJ69130.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
           JV-V01]
          Length = 427

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 122/443 (27%), Positives = 202/443 (45%), Gaps = 43/443 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +       L+     S    LS  DQ L   IV  T+++   ++  L  ++ + L  
Sbjct: 4   VLDQGSYSNISLNNSLKHS---NLSIADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTE 60

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKLVNSILRRVSRE- 134
           K   ++ LL +S+ Q+++LD V D AV+D A + AK+  K +    +LVN ILR  +R  
Sbjct: 61  K--YIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRRG 118

Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIE 187
                +   ++ ++    +PEW  + L + +G ++  ++ ++   P    + ++   D E
Sbjct: 119 VILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKNSVRISKLADKE 178

Query: 188 TWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               +L                +      I     F EG   +QD +AS+ V+ F    +
Sbjct: 179 QVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLFEEGKLTIQDEAASLVVEAFDFEQD 238

Query: 243 LSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAF 299
             VLD C+APGGKT Q    +    VTALD+  ++L  +R N  R+H+         DA 
Sbjct: 239 EHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDAR 298

Query: 300 DYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                     F  +LVDAPCS  G +RR P++ +T+   D+      Q  +L    S +K
Sbjct: 299 KATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQLAILTAVSSLLK 358

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
             G +V+S CS+  +++EEVV+K L++ P   ELVP      +        S  G ++I 
Sbjct: 359 KNGELVYSTCSISMEENEEVVKKFLQAHP-DFELVPFKLTKLE--------SKTGMLKIM 409

Query: 417 PDMLEKIDGVSSGMDGFFAVALR 439
           PD+         G DGFF    +
Sbjct: 410 PDL--------DGNDGFFIAKFK 424


>gi|193212287|ref|YP_001998240.1| sun protein [Chlorobaculum parvum NCIB 8327]
 gi|193085764|gb|ACF11040.1| sun protein [Chlorobaculum parvum NCIB 8327]
          Length = 428

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 189/457 (41%), Gaps = 53/457 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR ++  +L  +   + S   LL+     S    L + D+ L R +V  TL++  + D
Sbjct: 1   MTAREIALRVLIDLDGMKKS-EELLNRMLERS---SLERNDRALARELVAGTLKYRLQCD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            V++        +    L+ +LR+ V Q+L+LD V   A V+ +V+ A++ K   H AKL
Sbjct: 57  FVIERFYRHDYAKAAEVLKHILRLGVYQLLHLDRVPRSAAVNESVKLARKFKG-EHLAKL 115

Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR +S+  I+L    A +            PEW   R    YG E    +      
Sbjct: 116 VNGLLRNLSKATIDLEGWTADLPEAKRLSILYSYPEWLTSRWIANYGAETAAKMLAYGNQ 175

Query: 175 PLYIDLTVK---FDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
           P      +     D ET            V    G              P   +GV  VQ
Sbjct: 176 PPATAYRINLLKSDPETLLATPELSDAKRVSDDEGLGSFFFSKSFDRMEPLLRDGVVSVQ 235

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           + +  +   L       +V+DLCAAPGGK+  +   + +  ++ ALD +  ++E+L  N 
Sbjct: 236 NPTQGLACLLAAPQPGSTVVDLCAAPGGKSTFMAELMQNRGRIIALDRTPAKVERLASNA 295

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             L +   +  E DA  +  +   D VL+DAPC+ TG + R  ++ W    + + +    
Sbjct: 296 QALGITIIEPREGDALTFELEGAVDTVLLDAPCTGTGVLGRRAELRWRTTPEKLWELVEL 355

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L    S +  GG++V++ CS++ +++E+  +  L+  P  V               
Sbjct: 356 QAAMLDHAASLLPAGGVLVYATCSVEPEENEQQAEAFLKRHPEFV--------------- 400

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 E      P           G DG FAV  R+
Sbjct: 401 -----AEQSRLTLPG-------AHEGFDGGFAVRFRK 425


>gi|229846677|ref|ZP_04466785.1| sun protein [Haemophilus influenzae 7P49H1]
 gi|229810770|gb|EEP46488.1| sun protein [Haemophilus influenzae 7P49H1]
          Length = 451

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 214/457 (46%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF ++L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +    ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+D+PCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|332638217|ref|ZP_08417080.1| 16S rRNA methyltransferase B [Weissella cibaria KACC 11862]
          Length = 457

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 115/463 (24%), Positives = 193/463 (41%), Gaps = 45/463 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            NAR ++   L  + R        L+          L +RD  L+  +V   ++    ++
Sbjct: 15  HNARAMAVRTLEKI-RNGAYSNLQLNNTVK---QAELDERDVHLMTTMVYGVIQRRMTLE 70

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             L   +     +    +++LL +S+ Q+ +LD V  +A+ D A+  AKR + +    K 
Sbjct: 71  YWLTPFVKKP-EKLDAWVRELLYISLFQMKFLDKVPTHAIFDEAINIAKR-RGHDGVRKF 128

Query: 124 VNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           V  +L        R   E  + ++R++  + +PEW   +L    G E+   I+ A     
Sbjct: 129 VTGVLHAIDREGVRSFDEITDKVERLSIEASLPEWLINQLTTELGWEKASRIAMAINDAP 188

Query: 177 YIDLTVKFDIETWAHK---LNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWWVQDA 228
                V   + T A     L A        ++           + S   F +G+  +QD 
Sbjct: 189 AQSARVNLAVTTVAEATDILEAEGFTVTPSKVTPDALLLSGGHVASSQAFKDGLVTLQDE 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNL 283
           SA +         ++ VLD  AAPGGKT Q+        G  V ALD+   ++  +  N 
Sbjct: 249 SAMLMAPSLDIHPDMQVLDAAAAPGGKTTQIATYLNATEGGIVEALDIHDHKVGLINQNA 308

Query: 284 DRLHLYA-EDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           +RLH+        +DA         + FD +LVDAPCS  G +RR P++ + +   D + 
Sbjct: 309 ERLHVADRVHARTLDARKVDEAFADEQFDRILVDAPCSGFGLLRRKPEIRYDKTMADSLS 368

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L      +K GG +V+  C++ + ++E+VV + L   P   ELVP  +AY  
Sbjct: 369 LQKIQLGILEAAAPKLKAGGRMVYGTCTILQSENEDVVDQFLAEHP-DFELVPTYTAY-- 425

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 A    G + + PD  E         DGFF   L++  
Sbjct: 426 ---DLEAQDDRGMVHMFPDDFES--------DGFFIATLQKKA 457


>gi|295425221|ref|ZP_06817924.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064997|gb|EFG55902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           amylolyticus DSM 11664]
          Length = 447

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 205/459 (44%), Gaps = 43/459 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +  +AR ++   L  V+         L+     S    LS  DQ L   IV  T+++  
Sbjct: 8   STTKSARAIALETLIRVLENGSYSNISLNNNLKHS---NLSVADQNLATKIVYGTIQYKI 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRH 119
            ++  L  ++ S +  K   L+ LL +S  QIL+LD V + AV+D A + AK+  K++  
Sbjct: 65  YLEYQLHDLIKSKITEK--YLKPLLLMSAYQILFLDKVPNRAVLDEANKLAKQFGKKHSS 122

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISI------IPEWFKERLENFYGKERVLAISDACI 173
             +LVN ILR ++R    L  +   ++        P W  E   + +G+ R   I  +  
Sbjct: 123 GFRLVNGILRSLTRRGPILPDKNDLVNYLSVKESFPRWLVEYFISLWGEARTEKILASYN 182

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQ 226
                 + L++  D E     L          +L           I S   F +G   +Q
Sbjct: 183 ETAKNSVRLSILQDEEKTVAALKQAGYEPTPSKLAANVAILVHGGIASSSLFKQGKLTIQ 242

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284
           D +AS+ V  F    N  VLD C+APGGKT Q    +   +VTALD+  ++L  ++ N  
Sbjct: 243 DEAASLVVDAFDFKGNEKVLDACSAPGGKTVQIAEHLQTGEVTALDIHDKKLRLVQQNTK 302

Query: 285 RLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R+++        I    A DY  K+ F  +LVDAPCS  G +RR P++ +T+  +D+   
Sbjct: 303 RMNVADKVKTVAIDARKADDYFSKQQFAKILVDAPCSGLGLLRRKPEIRYTKSKNDLFSL 362

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L      ++  G +++S C++ K++ E+V++K L + P             + 
Sbjct: 363 AKIQLAILNHVSCLLENDGELIYSTCTISKEEDEDVIRKFLAAHPDFA---------LQP 413

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             +    S  G ++I PD          G DGFF   L+
Sbjct: 414 FKLEKISSKTGMLKILPDEY--------GSDGFFIAKLK 444


>gi|313113577|ref|ZP_07799165.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624092|gb|EFQ07459.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 444

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/441 (20%), Positives = 170/441 (38%), Gaps = 39/441 (8%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
            +      +LD E      + L  RD+    AI    L     +D +L   L   L +  
Sbjct: 17  EQDGFSNLVLDAELKR---QQLEGRDKAFASAIFYTVLEHRGTLDYILCQFLPKGLAKLD 73

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             ++++LR ++AQ  Y+ V   A V+ AV+  +  K++   + LVN++LR+     +   
Sbjct: 74  APVREILRAALAQARYMQVPVSAAVNEAVKLTRAFKKS-SASGLVNAVLRKACNYDLSTA 132

Query: 140 QRIAGISII------PEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                +  +           E L   Y  +  L I           L         +   
Sbjct: 133 SFKNEVERLMVLGSAGRDVAEFLHKNYP-DEALDILTYKADGGMTSLRANPLKGSADELC 191

Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            KL A         +           S      F +G + V+  ++ +           +
Sbjct: 192 AKLLASGAKEAKRGIVPGSVLARFEGSPAENELFRQGYFHVEGQASQLAALCVDAQPGET 251

Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+DLCAAPGGKT    + + S  ++ + D ++ R+  +R  + R+ L   + +  DA   
Sbjct: 252 VIDLCAAPGGKTILLAEQMHSTGRLYSCDAAENRVGLIRTAVQRMGLTNVEALCNDATKV 311

Query: 302 CPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISFVKPGG 359
            P     D +L D PCS  G + + PD+ + + +     +    Q  +L      +K GG
Sbjct: 312 NPALPQADRILADVPCSGLGILAKKPDLRYKKLEPAREAELLATQSAILDTAAQLLKAGG 371

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+S C++D  ++++ +   L   P    + P  +     +   M     G + +    
Sbjct: 372 RLVYSTCTIDPAENQQQIAAFLARHPEFTVVEPAAA-----LPAGMTAGEHGALSV---- 422

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
                   +GMDGFF  A+++
Sbjct: 423 -----PTRTGMDGFFLCAMQK 438


>gi|325123992|gb|ADY83515.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 434

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 208/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  ++  +      + L 
Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTESLCQSLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +      L E          I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLVKLQSLEIQARACTLSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LN+  V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNDKIVVDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATQWTPAQPVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ + K    +P   E+          ID    + 
Sbjct: 358 DHMWQQLKVGGTLLYITCSILKAENEQQMMKFFAENPNAKEIK---------IDADWGVE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P             DGF+   ++++ 
Sbjct: 409 QTHGRQLLPQAQSG--------DGFYYCKIQKIA 434


>gi|71904040|ref|YP_280843.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|71803135|gb|AAX72488.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 452

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 112/450 (24%), Positives = 204/450 (45%), Gaps = 36/450 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  L
Sbjct: 22  RGKALLTLEHIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWYL 78

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +     +    +  LL +S+ Q++YLD    +A+V+ AV  AK     +   K VN+
Sbjct: 79  AHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 137

Query: 127 ILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLY 177
           ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S   
Sbjct: 138 ILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKAS 197

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           I +T    +E  A  L+A         L +      +   F  G   +QD S+ +     
Sbjct: 198 IRVTDPLKLEEAAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTL 257

Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294
               +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    +  
Sbjct: 258 NIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIETR 317

Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           ++D      +  K  FD +LVDAPCS  G IRR PD+ + +++ D       Q ++L   
Sbjct: 318 KLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSV 377

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              ++ GGI+ +S C++  +++ +V++  L+S P        N    K       +  +G
Sbjct: 378 CQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKDG 429

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ ITP+  +         DGFF   +RR+
Sbjct: 430 YLIITPEQYQ--------TDGFFIGQVRRV 451


>gi|33862543|ref|NP_894103.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
 gi|33640656|emb|CAE20445.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
          Length = 451

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 115/464 (24%), Positives = 183/464 (39%), Gaps = 60/464 (12%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V+  LL  V          L+     +    +S  D+ LV  +    +R    
Sbjct: 17  PGLLPRRVAWELLQAV-AAGAYADVALERALRQNP---MSGADRGLVMELAYGAIRQRQW 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +DA LD +      ++   L+ LL + + QIL +  +   A V+ +VE AK  K  R  A
Sbjct: 73  LDAWLDRLGKVPACKQPPVLRWLLHLGLYQILRMQRIPAAAAVNTSVELAKTGKLAR-LA 131

Query: 122 KLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            +VN ILR   R +   +          R+A    +P W  E+L  + G+      + A 
Sbjct: 132 PVVNGILRAALRARDAGMVLLEPEDSAARLAQAESLPLWLVEQLLVWRGEVGAELFARAS 191

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVML-------PTGGIRLKELPESIVSLPGFAEGV 222
                +DL +       E     L A+ +          G+ +      +   PG+ +G 
Sbjct: 192 NQVPTLDLRINRRRTSREKVRLALEAIGVESTPIESCPDGLMVTGSAGDLSQWPGYQQGH 251

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           W VQD S+ +   L        +LD CAAPGGK   L   +    +V A+D S  RL++L
Sbjct: 252 WCVQDRSSQLVAPLLRPQPGDRILDACAAPGGKATHLVELMGGSGEVWAVDRSAGRLKRL 311

Query: 280 RCNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
             N  RL     + +  DA +        +  F  +LVDAPCS  GT+ RH D  W    
Sbjct: 312 ADNAARLGGDCLNALVADASNLLAVKPSWRGSFQRILVDAPCSGLGTLARHADARWRVTP 371

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
             +      Q KLL   +  +  GG +V++ C++   ++ + ++  L   P         
Sbjct: 372 LQVEGLVILQSKLLEGLLPLLSSGGRLVYATCTIHPAENFDQIEAFLGRHPE-------- 423

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                       LS     ++ PD          G DGF++  L
Sbjct: 424 ------------LSLSQEQQLWPD-------PEHGGDGFYSAVL 448


>gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           M8]
 gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           M8]
          Length = 448

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 174/459 (37%), Gaps = 47/459 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR+ +   L  V +    +  L               R +   R +V    R    +D 
Sbjct: 10  PARVHALDHLERVRKDDAFVDKL--------TIEDADARTRRQARELVAGVTRQRRWLDF 61

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL           ++ LQ++LR+ + ++L+     +A VD  VE AK+         LVN
Sbjct: 62  VLGEAYHGDYDSMEHRLQEILRLGLYELLFQSTPTHAAVDEYVELAKQALRP-GAGNLVN 120

Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +LR + R++  +            A     P W  +R  + +G +    +  A      
Sbjct: 121 GVLRTIDRDREHIPTPDTGDDANDLALRYSHPTWMVQRWLDRFGLDETTELLRANNRRPM 180

Query: 178 IDLTVKF------DIETWAHKLNAVMLPTGGIRLKELPESIVSL---PGFAEGVWWVQDA 228
             + +        D+  W  + + V + +  +      + + +L       +G   VQD 
Sbjct: 181 YSVRINPLRTSEADVAAWLDEHDVVNVDSPYLDRYLRLKRLQALIAGDLLDDGHVAVQDE 240

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           SA + VQL       +++D CAAPGGK       +     + A+D  ++RLE++    + 
Sbjct: 241 SAGLVVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEA 300

Query: 286 LHLY-AEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
                  +    D             D VL+D PC+  G + +   + W R  +D+ + A
Sbjct: 301 QGASEMVEAETADLRAWAGRPEPPQGDRVLLDVPCTGMGVLAKRAGLRWRRSMEDLEEMA 360

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL      V+PGG++V+S C+ + +++E  V+  L                 +  
Sbjct: 361 ELQDELLDAAAQLVRPGGLLVYSTCTTEPEENERRVEAFLARHDEF------TVESAEGH 414

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +S  G++   P            MDG FA  LRR
Sbjct: 415 VPDEMVSDAGFLATFPH--------RHRMDGAFAARLRR 445


>gi|145635940|ref|ZP_01791626.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
 gi|145266799|gb|EDK06817.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
          Length = 451

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 214/457 (46%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASQPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
 gi|158432588|gb|EDP10877.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
          Length = 415

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 102/451 (22%), Positives = 177/451 (39%), Gaps = 51/451 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR  +  LL  +         LL      +  + +  +D+ LV  IV  TL+    + 
Sbjct: 1   MNARAYAFALLKEICIDEGYSNLLL-----RNKLQSVDPKDKALVTQIVYGTLQNYRLVR 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
                 +     +    +  LL +SV Q+LY+D +  YAV+D AV   K++  +  F+ L
Sbjct: 56  YQWQSYVKKEPCK---EVALLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNI-HPRFSAL 111

Query: 124 VNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACISPLYI 178
           VN++LR+V R     L+  A          P W     +  YG +    I  + +     
Sbjct: 112 VNAVLRQVERNGKRELEGNAIEQLALETSHPTWLVAMWKAQYGWQECEKICHSDLEIRKQ 171

Query: 179 DLTVKFDIETWAHKLNAVMLPTGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            + V     +    L +     G      L  L   I+    + +G+  +QD ++ +  Q
Sbjct: 172 CVRVNTMKASVEELLASGEFVKGNLAEHALYYLGNDIIHSNYYKQGLVSIQDEASQLVAQ 231

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                    +LD+C+APG K       +     +   D+   R+E ++    RL L +  
Sbjct: 232 YVDPQPQERILDVCSAPGTKACHIAERMGDKGSIVCGDIHAHRVELIKNGARRLQLQSIQ 291

Query: 293 IIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
              MDA        ++FD VL D PCS  G + R  D+ +   + D+      Q+++L  
Sbjct: 292 AQVMDATSLKEIEGEMFDRVLCDVPCSGYGVLARKSDIKYHAKSTDMDTLIPLQQQILQS 351

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               V   GI+V+S C+L+K+++E+ V   L                             
Sbjct: 352 ASKHVVKDGILVYSTCTLNKKENEKQVAAFLAQHEEFE---------------------- 389

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             ++      + I   +   DGF+   L+R+
Sbjct: 390 -CLQ-----QQTIFPYTHHSDGFYIAKLKRV 414


>gi|309973883|gb|ADO97084.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846]
          Length = 451

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 215/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +   +    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEVNNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    + +               ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGISSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q+ L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAH-ADAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|16272567|ref|NP_438784.1| sun protein [Haemophilus influenzae Rd KW20]
 gi|260581533|ref|ZP_05849340.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           influenzae RdAW]
 gi|1169716|sp|P44788|RSMB_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|1573620|gb|AAC22284.1| sun protein (sun) [Haemophilus influenzae Rd KW20]
 gi|260091807|gb|EEW75763.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           influenzae RdAW]
          Length = 451

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 215/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    + +               ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|260583337|ref|ZP_05851110.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           influenzae NT127]
 gi|260093608|gb|EEW77523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           influenzae NT127]
          Length = 451

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 215/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    + +               ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGISSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+D+PCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|229845581|ref|ZP_04465708.1| sun protein [Haemophilus influenzae 6P18H1]
 gi|229811516|gb|EEP47218.1| sun protein [Haemophilus influenzae 6P18H1]
          Length = 450

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 214/457 (46%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASQPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|293610442|ref|ZP_06692742.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826786|gb|EFF85151.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 434

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  ++  +      + L 
Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTESLCQSLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +      L            I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACTLSGAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LN+  V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNDKIVVDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATQWTPAQPVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ + K    +P   E+          ID    + 
Sbjct: 358 DHMWQQLKVGGTLLYITCSILKAENEQQMMKFFAVNPNAKEIK---------IDADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P             DGF+   ++++ 
Sbjct: 409 QTYGRQLLPQAQSG--------DGFYYCKIQKIA 434


>gi|145639370|ref|ZP_01794975.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
 gi|145271417|gb|EDK11329.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
          Length = 451

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 213/457 (46%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF ++L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +    ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+D+PCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+ L     KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFIDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|237785571|ref|YP_002906276.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758483|gb|ACR17733.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 524

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 102/462 (22%), Positives = 174/462 (37%), Gaps = 40/462 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+   L  V  +      +L     +     LS RD      +   +LR    +DAV
Sbjct: 79  PRYVAWQALFRVDTENAFGNIILPSLMKEY---GLSGRDAAFTTELGYGSLRAQGLVDAV 135

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       L     ++  +LR+   Q+L + V ++A V+ +V+  +   + +     VN+
Sbjct: 136 IGECSSRPLEAIDPAVIAVLRLGTYQLLRMRVGNHAAVNTSVDLCQEVDKPK-AKGFVNA 194

Query: 127 ILRRVSREKIELLQRI-----------AGISIIPEWFKERLENFYGKERVLAISDACIS- 174
           +L  V++                    A  +  PEW  +   +  G   +  +SDA I+ 
Sbjct: 195 VLHSVAQRTESEWIDHLTKNADPFERMALATAHPEWIVKVFRDSLGDYAISELSDALIAD 254

Query: 175 --PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
                + L  +      E  A              +        ++P   EG+  VQD  
Sbjct: 255 DARPRVHLVARPGEITAEELALVTGGEQTSYSPYGVVLEEGDPGAIPAVREGMAAVQDEG 314

Query: 230 ASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNL 283
           + +  +               LDLCA PGGKTA +        A  D  +    + R   
Sbjct: 315 SQLIARAAAEAPLEGDETGQWLDLCAGPGGKTALMACLARIDGAHVDAVEPVPHRARLVE 374

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
                    +  +D      +  +D  LVDAPC+  G +RR P+  W +  DD+ +    
Sbjct: 375 KTTTGLPVTVHTVDGRQSGLEAHYDRTLVDAPCTGLGALRRRPEARWRKSPDDVPELVTL 434

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR+LL  G    +PGGIVV+S CS   +++ ++V    ++ P    L PL++  +    M
Sbjct: 435 QRELLAAGAELTRPGGIVVYSTCSPHLEETVKIVDWAEKNCP----LQPLDTVDY-MCGM 489

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
               + E  +++ P           G D  F    RR   P+
Sbjct: 490 QHCRAGENAVQMWPH--------RHGTDAMFVQIFRRSATPE 523


>gi|319897839|ref|YP_004136036.1| 16S rRNA m5c967 methyltransferase,
           s-adenosyl-l-methionine-dependent [Haemophilus
           influenzae F3031]
 gi|317433345|emb|CBY81723.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
           [Haemophilus influenzae F3031]
          Length = 451

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 214/457 (46%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y     +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWSEIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    + +               ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPYFEEGAVTVQDLSAQWAT 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q+ L +     EL+ L  +         
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENYEQIQEFLNAH-ADAELLSLPFS--------- 421

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +     +  P          +  DGF+   L +  
Sbjct: 422 DDTSAVGFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|219871972|ref|YP_002476347.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           parasuis SH0165]
 gi|219692176|gb|ACL33399.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           parasuis SH0165]
          Length = 432

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 126/458 (27%), Positives = 210/458 (45%), Gaps = 42/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R V++ ++  V+ +  SL+ L+       A   L  +D   V+       R L
Sbjct: 1   MKKH-STRAVTAQIILQVLDQGKSLSTLIPE-----AQSQLDSKDLAWVQETTFGICRVL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++A++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  +   F
Sbjct: 55  PRLEAIIKLLVEIPLKNKTRLVHCLLLVGLYQLLYMRVPPHAAVDEVVN-ATKVLKLDSF 113

Query: 121 AKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             L N +LRR  RE+  +         ++ PEW   +L+  Y   R +  ++    P++I
Sbjct: 114 RALTNGVLRRFLREQEAILAKVDKHWQTLHPEWLVNKLKQAYPNWREIVDANNQKPPMWI 173

Query: 179 DLTVK-FDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            +  +  +   +   L         A         L +   S+  LP F +G   VQDA 
Sbjct: 174 RVNAQRTNRADYVALLGDLAKNHKEATACVPDCAVLLDKAVSVSQLPHFKQGWVAVQDAH 233

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A    +L    N   +LD CAAPGGKT  ++    +  V ALD+ + RL +++ NL RL+
Sbjct: 234 AQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLVRVKENLARLN 293

Query: 288 LYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
             A  I              ++FD +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q
Sbjct: 294 QTATVICGDASQPEQWLTSGEMFDKILLDAPCSATGVIRRHPDIKWLRKEEDIAGLAELQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            K+L    + +KP G+++++ CS+  +++ + +Q  L  +P   +LV +N          
Sbjct: 354 GKILKALWARLKPNGVLLYATCSVLPEENSQQIQHFLAQTP-EAKLVEIN---------- 402

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +  E  +      +++      G DGFF   L +  
Sbjct: 403 --VGGEQCL------MKQFFPKQDGGDGFFYAKLVKQA 432


>gi|301169342|emb|CBW28941.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           influenzae 10810]
          Length = 451

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 216/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    + +               ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVVALDVESHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+D+PCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q+ L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAH-ADAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|257438997|ref|ZP_05614752.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
           prausnitzii A2-165]
 gi|257198582|gb|EEU96866.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
           prausnitzii A2-165]
          Length = 440

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 102/440 (23%), Positives = 175/440 (39%), Gaps = 37/440 (8%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
            +      +LD E      + L  RD+    AI    L     +D +L+  L   L R  
Sbjct: 17  EQDGFSNLVLDAELRR---QKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFLPKGLARLD 73

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             ++++LR ++AQ  Y+ V   A V+ AV+  +  K+    + LVN++LR+     +E  
Sbjct: 74  PQVREILRAALAQARYMQVPVSAAVNEAVKLTRTFKK-ASASGLVNAVLRKACNYDLETA 132

Query: 140 QRIAGISII-----PEWFKERLENFYGKERVLAISDACISPLYIDL---TVKFDIETWAH 191
           +       +                +  E  L I           L    +K D      
Sbjct: 133 RFRNETQRLMVLGSAGQDVAEFLRTHYPEEALGILTHTADGGCTSLRANCLKMDAAALCE 192

Query: 192 KLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           KL    + +    L           S    P F EG + V+  ++ +           +V
Sbjct: 193 KLLESGVKSAQPGLVPGSVLAKFEGSPAEHPLFKEGCFHVEGQASQLAALCVEAKPGDTV 252

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           +DLCAAPGGKT   A+ +     + + DV++ R+  +R  ++R+       +  DA    
Sbjct: 253 IDLCAAPGGKTLLLAEEMQGQGALYSCDVAEHRVGLIRSAVERMGFAHVTALCNDATRPN 312

Query: 303 PKKL-FDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           PK    D +LVDAPCS  G + + PD+ +   +     +    Q  +L    + +K GG 
Sbjct: 313 PKLPAADRILVDAPCSGLGILAKKPDIRYKTLEKARHDELLATQSSILDTAAALLKAGGR 372

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C++D  ++EE V   L   P    + P  +         M +   G + +     
Sbjct: 373 LVYSTCTIDPAENEEQVAAFLARHPEFRVVRPAVA-----FPDGMTVGEHGALSV----- 422

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                  +GMDGFF  A+++
Sbjct: 423 ----PTRTGMDGFFLCAMQK 438


>gi|172040659|ref|YP_001800373.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           urealyticum DSM 7109]
 gi|171851963|emb|CAQ04939.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           urealyticum DSM 7109]
          Length = 513

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 162/471 (34%), Gaps = 47/471 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +G  AR  +  +L  V  +       L     +   R +S RD      +   TLR    
Sbjct: 56  TGDKARDAAFAVLRQVTEEDAYGNLALPAVLRE---RGISGRDANFATELTYGTLRATGL 112

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DA++       + +        LR+   Q+L   V  +A VD +VE  K +   +  + 
Sbjct: 113 LDAIIAKAAGRPVAKIDSVALDALRIGAYQLLRTRVEPHAAVDTSVELVKANGGGK-ASG 171

Query: 123 LVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLEN------FYGKERVL 166
            VN +LR +SR   E              +A     PEW                   + 
Sbjct: 172 FVNGVLRTISRSTPEQWLDRVAPGSDLANMALRYAHPEWIAAAFNQSLGGSSEKPAADLA 231

Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
              +A  +   + L  +      E  A              +     +   L    +G+ 
Sbjct: 232 EALEADDARPTVHLAARPGQISAEELALITGGEQGRWSDYAVYLDSGAPGELEAITQGLA 291

Query: 224 WVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLE 277
            VQD  + +                  LDLCA PGGKTA +        A  D ++    
Sbjct: 292 SVQDEGSQLISLALVQAPLGREDRGRWLDLCAGPGGKTAFIGSWAQAEQATVDATEISAH 351

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           +              +   D  +         P++ FD VLVDAPC+  G +RR P+  W
Sbjct: 352 RAELVAKSTKELPVRVRTGDGRNLAGVRDLELPEEGFDRVLVDAPCTGLGALRRRPEARW 411

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            +   D+ +    QR+LL        PGG+V++S CS    ++ ++V    R      E 
Sbjct: 412 RKQETDVTELVPLQRELLRSAWEATAPGGVVIYSTCSPHPLETTQLVDSFCR--DTGAEP 469

Query: 391 VPLNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + L +        A A    G +I++ P           G D  F   +R+
Sbjct: 470 IDLGAEVPALAAAAAAGGAVGPYIQLWPH--------RHGTDAMFIAGIRK 512


>gi|68249187|ref|YP_248299.1| SUN protein [Haemophilus influenzae 86-028NP]
 gi|68057386|gb|AAX87639.1| SUN protein [Haemophilus influenzae 86-028NP]
          Length = 450

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 212/457 (46%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+   + +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQALDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL RL+  A  
Sbjct: 252 MLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIV 311

Query: 293 II-------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +        E  A        FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+PL  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLPLPVSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|90961592|ref|YP_535508.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|301299300|ref|ZP_07205586.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90820786|gb|ABD99425.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|300853144|gb|EFK80742.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 445

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 116/465 (24%), Positives = 198/465 (42%), Gaps = 44/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+    RL++  LL+ V  +       L+    ++ F   S +D  L+  IV   ++  
Sbjct: 1   MKNKT-VRLLAVELLTRVESQGTYSNLALNKVIEENNF---SVKDTKLLTTIVYGVIQHK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L+  +  +  + +  +++LL VS+ Q++YLD + D AV + ++E AK  K +  
Sbjct: 57  LTLEYWLEPFIKKA-NKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIAK-IKGHTG 114

Query: 120 FAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K V  +L        R   E    + R++  +  PEW  E L    G  +V +I D  
Sbjct: 115 IRKFVTGVLHSIRRNGLREVNEIDNDITRLSIGTSTPEWLVEELIKELGITKVESILDTI 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224
            +     + +          +N +      IR        L      +     F  G   
Sbjct: 175 NTSPKHSVRINTHKVNKQILVNELKNDGYTIRESEVTPDALIVDGGFLPKSSEFRNGKMI 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEKLR 280
           +QD SA + V+      +  VLD CAAPGGKT Q+    +    KV ALD+ K +++ + 
Sbjct: 235 IQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVWALDIHKHKVKLIE 294

Query: 281 CNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N ++L L     A+ +    A      + FD +LVDAPCS  G +RR P+V + +   D
Sbjct: 295 ENANKLGLISKVSAKQLDARKAITEFDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLAD 354

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q  +L +    +K GG + +S C++   ++++V+   L+  P  V+       
Sbjct: 355 SYSLHDIQVNILEKVAPLLKKGGYLTYSTCTILNIENQKVIDDFLKKHPEFVQEKTYTKN 414

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             K     ++L+      I PD            DGFF   LR+ 
Sbjct: 415 KLKDERDTLSLT------IYPDDYMS--------DGFFIATLRKK 445


>gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 432

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 206/457 (45%), Gaps = 43/457 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   NAR V++ ++  V+ +  SL  L+       A   L  +D  LV+ I     R L
Sbjct: 1   MKK-QNARAVAAQIILQVLDQGKSLATLIPE-----AQAKLEAKDLPLVQEITFGVCRTL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR++AV+   +   L  K   +  LL V + Q+LY+ V ++A VD  V  A+  K + +F
Sbjct: 55  PRLEAVIAQAVEKPLKGKTRLVHCLLLVGLYQLLYMRVPEFAAVDEVVNAARSLKLD-NF 113

Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             L+N +LRR  REK            ++ PEWF  +L+  Y   R +  ++    P++I
Sbjct: 114 KALINGVLRRFLREKDSLLAKFDKNWQTLHPEWFVNKLKKAYPNWREIIDANNQRPPMWI 173

Query: 179 DLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
              ++                 +  N          L   P  +  L  F +G   VQDA
Sbjct: 174 RSNIQRIKPQDYRVLLGDLVAKNSENMTACVPESAILLANPVPVNKLMNFEQGWATVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286
            A     L    N   +LD CAAPGGKT  ++ +  +  V ALD+ + RL+++R NL RL
Sbjct: 234 HAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARL 293

Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              A  I       A       +FD +L+DAPCS+TG IRRHPD+ W R  +DI +    
Sbjct: 294 GQTATVICGDASKPAEWLDDGVMFDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVAL 353

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q K+L      +KP G++V++ CS+  +++ E + + + S          + A W  +D 
Sbjct: 354 QEKILEALWGRLKPRGVLVYATCSVLPEENGEQITRFVASH---------SDAEWVEMDF 404

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +     +  P           G DGFF   L +
Sbjct: 405 NGEKTA--MKQFFPQ--------EQGGDGFFYAKLIK 431


>gi|261856665|ref|YP_003263948.1| sun protein [Halothiobacillus neapolitanus c2]
 gi|261837134|gb|ACX96901.1| sun protein [Halothiobacillus neapolitanus c2]
          Length = 437

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 117/453 (25%), Positives = 198/453 (43%), Gaps = 33/453 (7%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             ++   +++ LL  V+ + +SL   L      +         + LV+A+    LR    
Sbjct: 2   PRLSPEALTAQLLLSVVGQGVSLDAALGRVLSQAQPVH-----RGLVQAMGYEVLRHYEA 56

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +    D +L   +P K   +  LL V + +I          V+ AV QA R+  +     
Sbjct: 57  LVFWRDSLLERPIPAKSAIIALLLLVGLERIRGARREASRSVNSAV-QAARELGHPWATG 115

Query: 123 LVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACISPLY 177
           L+N++LRR  R+  E +   A         +P+W  + L   +G+ R  A+  A  +   
Sbjct: 116 LLNAVLRRAVRQIEEGVDPFAQAPSAAGARLPQWLFDALTVDWGEARASALGSALATHPP 175

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
           + L V  D   +  +L+++ +                P  +  LPGFAEG   VQD +A 
Sbjct: 176 MTLRVAGDRAAYGEQLSSIEIEANPTAFSTRGLNLVHPMDVDRLPGFAEGQVSVQDEAAQ 235

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLY 289
             V L        VLD C+APGGKT  ++    +   TA+D+   R+ +++ NL+R  ++
Sbjct: 236 WVVDLLDLAPGQHVLDACSAPGGKTLAMLQHQPESNVTAVDIDTTRMARVQENLERGQVF 295

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A           D+   + FD +L D PCS+TG IRRHPD+   R  +D+      Q  +
Sbjct: 296 ARLIVGDAGAPQDWWDGQPFDRILADVPCSATGVIRRHPDIKRLRRPEDLPVLVERQAVI 355

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    S +KPGG +V++ CS+  +++   V   LR        +PL+  + +   +    
Sbjct: 356 LDALWSLLKPGGRMVYATCSILDRENSAQVAAFLRRH-GDARALPLSVDWGEPRQIDGQF 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      + +++  VS G DGFF   L +
Sbjct: 415 -----------LGQQVFPVSEGHDGFFYAVLEK 436


>gi|302035777|ref|YP_003796099.1| ribosomal RNA small subunit methyltransferase B [Candidatus
           Nitrospira defluvii]
 gi|300603841|emb|CBK40173.1| Ribosomal RNA small subunit methyltransferase B [Candidatus
           Nitrospira defluvii]
          Length = 449

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 108/461 (23%), Positives = 186/461 (40%), Gaps = 46/461 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              L  +    +    L D      A   L  RD+  +  +V   LR+   +D  L  + 
Sbjct: 1   MRALLAIDTAGMLGDDLFDQVSSREA---LDLRDRAFMVELVRGVLRYRATLDWRLGLLS 57

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD--KENRHFAKLVNSIL 128
              + +    +Q +LR+   Q+LYLD V D A V+ +V+  K+   +  R ++  VN++L
Sbjct: 58  DRRITKLPTLVQTILRLGAYQLLYLDRVPDSAAVNESVQMTKQQSRRLGRDWSGFVNAVL 117

Query: 129 RRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           R + R                 A     P W  ER     G ER   +  A +    + L
Sbjct: 118 RALLRSPEPAWPDAGSDPVVALAVRYSCPAWLVERWCRRLGAERAEVLCRASVEAPPLTL 177

Query: 181 TVKFDIETWAHKLNAVMLPT---------GGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
            V     + +  L  +                       +++ LPG+AEG ++V+D +  
Sbjct: 178 RVNTLRTSRSALLADLAAAQVEANPTSVSEVGLQLSRSCAVIDLPGYAEGRFYVEDEAGQ 237

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   L         LD CAAPGGK   L   + +  ++ A+D    RL+ +  N  RL +
Sbjct: 238 LIPLLLDVQPGQRALDACAAPGGKATHLAALMENQGEIVAVDRVSSRLDLVMANCRRLGV 297

Query: 289 YAEDIIEMDAF---------DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
                +  D                + FD +L+DAPCS  G +RRHP+  W +  + I +
Sbjct: 298 KILTPLAGDLRALVGAEIASHPMLSRPFDRILLDAPCSGLGVLRRHPEGKWYKTPESIAQ 357

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q +LL      ++PGG++V+S CS++ +++E ++ +  ++          + A W 
Sbjct: 358 HRRMQVELLAVTSRLLRPGGVLVYSACSIEPEETESIIDEFCQAHHQFQRE---SIAPWL 414

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  ++P G +    +           MD FFA  +RR
Sbjct: 415 PPAGLPFVTPRGDLSTMANSKR--------MDLFFAARVRR 447


>gi|330970341|gb|EGH70407.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 441

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 124/456 (27%), Positives = 198/456 (43%), Gaps = 37/456 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVDALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LR   R+   LL  +    +     P W ++ L+  +  E+  AI  A  +   + L
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       + +   L+   L        +       P  + SLPGFAEG   VQD +A 
Sbjct: 174 RVNRRHHRRDQYLELLDTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L
Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLDGVVAVDLEAKRLVRVRENLDRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +
Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A
Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                          ++     G DGF+   L ++ 
Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437


>gi|304389466|ref|ZP_07371429.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|304327276|gb|EFL94511.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 523

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 106/475 (22%), Positives = 180/475 (37%), Gaps = 47/475 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+   L  V +       +L      +    L +RD      +V  TLR   R DA
Sbjct: 45  PARDVAFQALRRVDQDHAYANLVLPGLIERAR---LHRRDAAFATELVYGTLRLQGRYDA 101

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++  +    +      L  +LR+ + QIL + V DYA VD  V+ A RD+ +   A +VN
Sbjct: 102 IIGLLSDRDIAALDPELVTVLRMGIHQILQMRVEDYAAVDTMVDLA-RDRLSAGPAGMVN 160

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169
           ++LR+V+   +                 +     PEW    L +           +  + 
Sbjct: 161 AVLRKVTEHDLSYWLDAITSGLTGEKALSRAFSYPEWIVWALRDALVATGRDAGELPGLL 220

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220
            A   P Y+ L  +  + +      A                  +         L     
Sbjct: 221 HAQNRPAYVTLCARPGLISADELATAAETYLDADTRLGELSDCAVVLSGGDPRRLRAVER 280

Query: 221 GVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272
           G+  V+D  + +  ++           + +DLCA PGGKTA            V A +VS
Sbjct: 281 GLAGVEDEGSQLVAKVLAAAPVTGVERTWVDLCAGPGGKTALLAGLARSRDVSVIANEVS 340

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             R E +R +          +++ D  D+        D VLVDAPCS  G++RR P+  W
Sbjct: 341 PHRAELVRDSTKAFTDQIVQVLQGDGRDFGGLHPGKADRVLVDAPCSGLGSLRRRPEARW 400

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            +   D+      Q+ LL   +  VKPGG+V ++ CS    ++ +VV+  +++      L
Sbjct: 401 NKSATDLKDLTALQQDLLRSALETVKPGGVVGYATCSPHLAETRQVVETTVKNRADLQVL 460

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                A    ++    L    ++++ PD          G D  F   +++    +
Sbjct: 461 DAPAVAREIIVNSEHDLGLGPYLQLWPD--------RDGTDAMFLALIQKKSPTE 507


>gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228]
          Length = 449

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 109/464 (23%), Positives = 206/464 (44%), Gaps = 41/464 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R      L  V  K        +L        +  +RD+ L   I    +R  
Sbjct: 1   MK---NLRSEILKALLRVE-KGSYS----NLLLNSKLKLIEDKRDKNLFTEIYYGVIRNK 52

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN-- 117
             +D +++    +SL +    +   LR+ V Q+ +LD V   A +  +VE  K       
Sbjct: 53  LYLDYIINQFSKTSLLKMDSEVLMGLRIGVYQLFFLDKVPARAAIYESVEAVKIILPASQ 112

Query: 118 RHFAKLVNSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
           +      N +LR ++R++          +  + ++     P W  +R    YG  +   I
Sbjct: 113 KGAISFTNGVLRNINRKRNSIKLPAKNKDPEKHLSIKYSYPMWLVKRFIKQYGFNKSEKI 172

Query: 169 SDACISPLYI---DLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAE 220
             A      +     ++K     +   L+A  L      L+   +     +      F  
Sbjct: 173 LKAGNKRAEVIYRHNSLKMTKAQFIELLDAADLEYESTFLESFYKLKKVNNPAQTKVFKR 232

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G  ++Q  SA +   L     N+ VLDL AAPGGKT+ L   + +  ++ ALD+S+ RL+
Sbjct: 233 GGAYIQGTSAGLASLLLDPSENMEVLDLAAAPGGKTSHLAALMNNTGQIKALDISQSRLD 292

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            ++ NL RL +    + + DA  Y   K +D +L D PCS  G I   P++ W ++ + I
Sbjct: 293 LVQENLLRLGVKNVSLKKADASKYQDNKKYDRILADLPCSGLGLIASKPEIKWDKNENII 352

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            K A  Q K+L   ++ +K GG +++S C+L K++++++++++L+ +    +L+ L+S  
Sbjct: 353 EKMAKLQYKILNNNLNKLKSGGQLLYSTCTLAKEENQDLIKRILKENK-AYKLIDLSSRL 411

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            K+  + +  + + ++ I P  ++          GFF   ++++
Sbjct: 412 EKASSLNLE-TKDKYLEILPGEVDSE--------GFFYALIQKV 446


>gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 470

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 117/462 (25%), Positives = 196/462 (42%), Gaps = 44/462 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L+ V +    +   ++       +  +   D+ L   +V  +L+F   +  +
Sbjct: 23  ARYQAMETLNLVYKGEAFVNQEVNQVLS---YSRVEDSDRDLYTRLVYGSLQFHWTLQEL 79

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  VL     R K  L  LL +S  Q  YLD V D+A+VD AV  AK+ + N+   +  N
Sbjct: 80  LKQVL-KLYKRTKKWLLALLELSAYQHYYLDAVPDHAIVDEAVRIAKK-RGNQTMGRFTN 137

Query: 126 SILRRVSREKIELLQRIAGIS-----------IIPEWFKERLENFYGKERVLAISDACIS 174
             LR + R    +   I+  +            +P  + +     +G E    I+ A + 
Sbjct: 138 GTLRNLFRTYPTIEDFISQQAGDQAYVLSLETSLPLDWVKYFTQRFGFETTQQIAQAMVE 197

Query: 175 PLYIDLTV----KFDIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWV 225
           P  +++ +      D +  +  L     P         +LK    +      F +GV  +
Sbjct: 198 PAQVNVRISRDYWQDQDKISQSLADQGFPNQSSQIAPHQLKVKTGNPAQSELFEKGVITI 257

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282
           QD +AS+ V +        VLD CAAPGGKT Q    +    +V A D+++ +L  +  N
Sbjct: 258 QDEAASLAVDILNPKAGDRVLDACAAPGGKTVQLAEYVGKTGQVLAFDIAENKLPLIADN 317

Query: 283 LDRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           + R+H+ +   I + DA     K     FD +LVDAPCS  G  RR PD    +D  D+ 
Sbjct: 318 VKRMHVDSQVSIQQGDASQLGEKFPAESFDGILVDAPCSGVGLFRRKPDTKLNKDFQDLK 377

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q ++L      +K  G +V+S C++  +++ +VV+K L + P    L  +   + 
Sbjct: 378 NLQKIQLEILNNVSPLLKKAGRLVYSTCTITAEENWQVVEKFLATHP-DFALKAIGPEWQ 436

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + I    +L  +  + I P             DGFF   L +
Sbjct: 437 EVI--QPSLINDACLEILPHHF--------NSDGFFVALLEK 468


>gi|300214410|gb|ADJ78826.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus
           salivarius CECT 5713]
          Length = 445

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 197/465 (42%), Gaps = 44/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+    RL++  LL+ V  +       L+    ++ F   S +D  L+  IV   ++  
Sbjct: 1   MKNKT-VRLLAVELLTRVESQGTYSNLALNKVIEENNF---SVKDTKLLTTIVYGVIQHK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L+  +  +  + +  +++LL VS+ Q++YLD + D AV + ++E AK  K +  
Sbjct: 57  LTLEYWLEPFIKKA-NKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIAK-IKGHTG 114

Query: 120 FAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K V  +L        R   E    +  ++  +  PEW  E L    G  +V +I D  
Sbjct: 115 IRKFVTGVLHSIRRNGLREVNEIDNDITSLSIGTSTPEWLVEELIKELGITKVESILDTI 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224
            +     + +          +N +      IR        L      +     F  G   
Sbjct: 175 NTSPKHSVRINTHKVNKQILVNELKNDGYTIRESEVTPDALIVDGGFLPKSSEFRNGKMI 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEKLR 280
           +QD SA + V+      +  VLD CAAPGGKT Q+    +    KV ALD+ K +++ + 
Sbjct: 235 IQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVWALDIHKHKVKLIE 294

Query: 281 CNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N ++L L     A+ +    A      + FD +LVDAPCS  G +RR P+V + +   D
Sbjct: 295 ENANKLGLISKVSAKQLDARKAITEFDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLAD 354

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q  +L +    +K GG + +S C++   ++++V+   L+  P  V+       
Sbjct: 355 SYSLHDIQVNILEKVAPLLKKGGYLTYSTCTILNIENQKVIDDFLKKHPEFVQEKTYTKN 414

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             K     ++L+      I PD            DGFF   LR+ 
Sbjct: 415 KLKDERDTLSLT------IYPDDYMS--------DGFFIATLRKK 445


>gi|323466286|gb|ADX69973.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus
           H10]
          Length = 448

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 200/460 (43%), Gaps = 44/460 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +  +AR +S   L  V++        L+     S    LS  DQ L   IV  T+++  
Sbjct: 8   STNKSARAISLETLIKVLQNGSYSNISLNNSLKHS---DLSIADQNLATRIVYGTIQYRL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
             +  L  +L + +  K   L+ LL +S+ QI++LD V + AV+D A + AK+  ++   
Sbjct: 65  FFEYQLTGLLKTKITEK--YLKPLLLMSLYQIIFLDKVPNRAVLDEANKLAKQFGKHHSS 122

Query: 121 AKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
              V + + R          ++ + ++ ++    +PEW  + L + +G ++  ++  +  
Sbjct: 123 GYRVVNGILRAFIRRGVILPDEKDTIKYLSIKESVPEWLVKYLIDNWGMQKAQSVLSSIN 182

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL-----KELPESIVSLPGFAEGVWWVQ 226
            P    + ++   D      +L           L           I     F +G   +Q
Sbjct: 183 DPAKNSVRISSLADRNKVFDQLKKEGYQPEWSNLSLNDAVLSHGGISESDLFEQGKLTIQ 242

Query: 227 DASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNL 283
           D +AS  +    F       VLD C+APGGKT Q+       VTALD+ +++L  ++ N 
Sbjct: 243 DEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQIAENIHGDVTALDIHEKKLRLVKENA 302

Query: 284 DRLH-LYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            R+H L        DA           F  +LVDAPCS  G +RR P++ +T+   D+  
Sbjct: 303 RRMHVLDKVTTKACDARKAHEIFKAGEFTKILVDAPCSGLGLLRRKPEIRYTKSLQDLRN 362

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L      +K  G +V+S CS+  +++EEVV+++LR  P   EL P + +  +
Sbjct: 363 LQKIQLTILDSISKLLKAEGELVYSTCSISMEENEEVVKQLLRIHPG-FELKPFSLSKLE 421

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                   S  G ++I PD          G DGFF    R
Sbjct: 422 --------SKTGMLKIMPD--------QDGNDGFFIAKFR 445


>gi|227890677|ref|ZP_04008482.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227867615|gb|EEJ75036.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 445

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 116/465 (24%), Positives = 198/465 (42%), Gaps = 44/465 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+    RL++  LL+ V  +       L+    ++    LS +D  L+  IV   ++  
Sbjct: 1   MKNKT-VRLLAVELLTRVESQGTYSNLALNKVIEEN---NLSVKDTKLLTTIVYGVIQHK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L+  +  +  R +  +++LL VS+ Q++YLD + D AV + ++E AK  K +  
Sbjct: 57  LTLEYWLEPFIKKA-NRLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIAK-IKGHTG 114

Query: 120 FAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K V  +L        R   E    + R++  +  P+W  E L    G  +V +I D  
Sbjct: 115 IRKFVTGVLHSIRRNGLREVNEIDNDITRLSIGTSTPKWLVEELIKELGITKVESILDTI 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224
            +     + +          +N +      IR        L      +     F  G   
Sbjct: 175 NTSPKHSVRINTYKVNKQILVNELKNDGYTIRESEVTPDALIVDGGFLPKSSEFRNGKMI 234

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEKLR 280
           +QD SA + V+      +  VLD CAAPGGKT Q+    +    KV ALD+ K +++ + 
Sbjct: 235 IQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVWALDIHKHKVKLIE 294

Query: 281 CNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N ++L L     A+ +    A      + FD +LVDAPCS  G +RR P+V + +   D
Sbjct: 295 ENANKLGLISKISAKQLDARKAITEFDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLAD 354

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q  +L +    +K GG + +S C++   ++++V+   L+  P  V+       
Sbjct: 355 SYSLHDIQVNILEKVAPLLKKGGYLTYSTCTILNIENQKVIDDFLKKHPEFVQEKTYTKN 414

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             K     ++L+      I PD            DGFF   LR+ 
Sbjct: 415 KLKDERDTLSLT------IYPDDYMS--------DGFFIATLRKK 445


>gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
           hominis ATCC 15826]
 gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
           hominis ATCC 15826]
          Length = 418

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 120/444 (27%), Positives = 199/444 (44%), Gaps = 37/444 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR  + H +  V+ +  +L  LL           +S  DQ L +A+V  TLR    + 
Sbjct: 1   MKARQAALHTIDGVINQHRTLNTLLAQ-----DKSRVSAADQALYQALVYGTLRQYRALS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   ++        + L  +L + + Q+L +++ D+ V++  V  A   +  R    L+
Sbjct: 56  ALCAQMMEKPPATPGHPLAIILNLGLYQLLQMNLGDHGVINETVNLAPHHRLAR-AKGLI 114

Query: 125 NSILRRVSREKIELLQ--RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           N+ILRRV RE+    Q    A  + +P+W + +       E  +A S++   PL + L  
Sbjct: 115 NAILRRVQRERAHWQQALENAATANLPDWLRGQYPAE---EAAIAASNSRQPPLTLRLNH 171

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKE--LPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
             D   W              +        ++  +PGF +G   VQDA+A     L    
Sbjct: 172 THDRAAWLAAHGDARANPLHPQAITLTHGHNVQHIPGFNDGAVSVQDAAAQHAATLLAPQ 231

Query: 241 NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEM 296
           N   +LD CAAPGGKT     +   A++ ALD  + RL +++ NLDRL L A        
Sbjct: 232 NGEHILDACAAPGGKTGHLLELAPTAELLALDHDRDRLVRVQENLDRLGLRATLKAADAA 291

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D   +   K FDA+L+DAPCS +G +RRHPD+ W R   D+ + A  QR+LL +    +K
Sbjct: 292 DTAAWWDGKPFDAILLDAPCSGSGVLRRHPDIAWLRTPADLKRLAASQRQLLERLWPTLK 351

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG ++++ C++   ++++ ++  L + P          A           +  G + + 
Sbjct: 352 PGGRLLYTTCTILPAENQDNIRAFLAAHPDARLQTLALPAD----------TGYGSLHL- 400

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
                         DGF+   L +
Sbjct: 401 ---------PDDDGDGFYYAMLHK 415


>gi|94266702|ref|ZP_01290375.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
           MLMS-1]
 gi|93452643|gb|EAT03206.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
           MLMS-1]
          Length = 484

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 123/497 (24%), Positives = 187/497 (37%), Gaps = 73/497 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R V+  LL    +    +  LL+    +        RD+ L+ A+V   LR+ 
Sbjct: 1   MTPTDNIRRVTLQLLLVQEQSGQPVEQLLEHRLREHPLA--DGRDRRLLEALVYGVLRWR 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             +D V+       L + K      LR+ + Q+L L  +   A ++  ++  +  ++ R 
Sbjct: 59  GLLDQVVAGYARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQPRW 118

Query: 120 FAKLVNSILRR--------------------------VSREKIELLQRIAGISIIPEWFK 153
               VN++LR+                                 L   +A     P W +
Sbjct: 119 LTGFVNAVLRKAAADIERLGRQQYLAGLVAEVTASTGQYASSAPLPMAVAAWLSHPPWLR 178

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN----------AVMLPTGGI 203
           +R E  YG E    +         + L V     T +  L           A       +
Sbjct: 179 QRWEQRYGLELCRELCHINNCLPPLVLRVNLHRLTASELLAQLQKAGIAATAGDYAPAAV 238

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--- 260
            L      +  LPG+ +G + VQD +A +   L         LD CA  GGKTA L    
Sbjct: 239 VLPPGSGRVEDLPGYGQGWFAVQDEAAQLVTMLLAGAGPGHYLDACAGLGGKTAHLAELL 298

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA----------- 309
              A +TAL+   RR   L  NL RL + A  I    A         D            
Sbjct: 299 PPEATITALEPQSRRALLLTANLHRLGVTARLIQGELAAHLPAADKKDKNGDTIPIFSPF 358

Query: 310 -------VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                  +LVDAPCS  G IRRHPD+ W R   ++      Q +LL      ++PGG++V
Sbjct: 359 SPFLYQGILVDAPCSGLGVIRRHPDIRWNRRAAELKNYQRRQLELLSTAAELLQPGGVLV 418

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CS + +++EEV+Q +L+  P     + L++        A  L    + R  P     
Sbjct: 419 YVVCSFEPEENEEVIQLLLKRRPE----LRLSAPAPYLPVAARQLVRGDFFRSLP----- 469

Query: 423 IDGVSSGMDGFFAVALR 439
               S G+DGFFA  L 
Sbjct: 470 ----SDGLDGFFAARLV 482


>gi|329767015|ref|ZP_08258543.1| ribosomal RNA small subunit methyltransferase B [Gemella
           haemolysans M341]
 gi|328837740|gb|EGF87365.1| ribosomal RNA small subunit methyltransferase B [Gemella
           haemolysans M341]
          Length = 441

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 96/458 (20%), Positives = 195/458 (42%), Gaps = 41/458 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + +NAR ++  +L  ++++       L+  +     +   ++D+  +  +V  T++    
Sbjct: 2   NSINARQIAYEVLYTIIQEDGYSNITLNKYFNQYKIQ---EQDKRFISEVVYGTIKNKIY 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ++ +L         R K  ++ +L +S+ Q+LY+D   ++A++D AV+ +K+   N    
Sbjct: 59  LEHILKSYSKG---RVKPKVKVILSMSIYQLLYMDKTPNFAIIDEAVKLSKKVAGN-ITG 114

Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           K VN ILR + R             ++    +  P      L+  YG E+   I  +   
Sbjct: 115 KFVNGILRNIERHASNLDLKYRNNTEQFCIENSCPNELYNILKEQYGVEKAQKIVVSFNE 174

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASA 230
                +         +    KL   +  +       +   +      F +G + +QD ++
Sbjct: 175 KSKNSIRYNPLKITKKELIEKLGDAVSESEICEDSLVLNKLNLDSSLFTKGYYIIQDEAS 234

Query: 231 --SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286
                       N   +LD CAAPGGK+  +      + + + D    +L+ +  N ++L
Sbjct: 235 ALVATSIGLPLDNKYKILDTCAAPGGKSLHIASKYFNSSLISCDKYIHKLKLIEDNKEKL 294

Query: 287 HLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +    + E DA   +      FD V+ D PCS  G I+  P++ +      +   A  Q
Sbjct: 295 GITNIQVKEQDATLTNDSFTDKFDIVVCDVPCSGIGVIKNKPEIKYKITNAYVEDIAKLQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-ELVPLNSAYWKSIDM 403
            ++L     +VK GG +++S C++DK+++ + ++K L+ +   + E + LN++  K+ D 
Sbjct: 355 YEILENSKHYVKQGGTLLYSTCTIDKRENIQNIEKFLKENRDFILEKITLNNSIVKTRD- 413

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  G + I PD            DGFF   L+++
Sbjct: 414 ------NGVLEILPDEYS--------CDGFFIAKLKKM 437


>gi|320352726|ref|YP_004194065.1| sun protein [Desulfobulbus propionicus DSM 2032]
 gi|320121228|gb|ADW16774.1| sun protein [Desulfobulbus propionicus DSM 2032]
          Length = 450

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 187/456 (41%), Gaps = 41/456 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  +L        S+  L            L   D+ LV+ ++   LR    +D +
Sbjct: 8   PRAVAVEVLCLWATTHNSIDPLFQTAIE-----QLPDIDRGLVKTLIYGVLRQKEYLDHI 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L       L + K      LR+ V Q+L+L  + + A V+  V   K   +       VN
Sbjct: 63  LRTFAKHPLRKMKPRTLMTLRIGVYQLLFLSRIPESAAVNATVNTLKAASQPAWLIGFVN 122

Query: 126 SILRRVSREKIELLQRIAGIS------IIPEWFKERLENFYGKERVLAISDACISPLYID 179
            ILR V+R++ +L                P W  +R    +G+    AI         + 
Sbjct: 123 GILRAVARQRTQLPTPEQMTQAEPPILNHPIWLVDRWRAEFGEATARAICACNNIEPPLT 182

Query: 180 LTV---KFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDAS 229
           L V   +         L    +             +   P ++ +LPG+ +G + VQD +
Sbjct: 183 LRVNRRQTSRPLLKALLEKSGIMARNGFFSPVALIIDTFPGAVAALPGYQQGHFQVQDEA 242

Query: 230 ASIPVQLFGTLN-NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285
           A +   L G L     +LD CA  GGKT+ L         + A++   RR   LR NL R
Sbjct: 243 AQLASLLTGPLPARCRILDGCAGLGGKTSHLAEMLPSDGAIVAVEPDSRRYRLLRDNLRR 302

Query: 286 LHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L   A+ +     + A+     + FDA+L+DAPCS TG IRR PD+ W R  +D+     
Sbjct: 303 LGHNAQALPVRADLRAYAATRPQPFDAILIDAPCSGTGVIRRQPDIRWNRQPEDLTPYQQ 362

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  LL    + +KPGG++V++ CSL+ +++ E V+  +   P               ++
Sbjct: 363 TQVHLLEIAATLLKPGGVLVYATCSLEPEENRETVRLFIERCPCFA------------LE 410

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            A A  PE   R+           + GMDGFFA  L
Sbjct: 411 HAAAFLPENARRLVNAAGFFQPNPADGMDGFFAARL 446


>gi|119716670|ref|YP_923635.1| Fmu (Sun) domain-containing protein [Nocardioides sp. JS614]
 gi|119537331|gb|ABL81948.1| Fmu (Sun) domain protein [Nocardioides sp. JS614]
          Length = 472

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 104/458 (22%), Positives = 172/458 (37%), Gaps = 37/458 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARL +  ++  V         +L           LS RD   V  +V+ T+R     DA
Sbjct: 31  PARLAALDVMKAVRVDGAYTNLVLPSVLR---QHGLSGRDAAFVTELVSGTIRRRGTYDA 87

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L   +   L + +  +   LR+   Q+L + V  +A +   V+  +    +       N
Sbjct: 88  ILAACVDRPLSKVEAKVLDALRLGTHQLLSMRVPVHAAISTTVDLVRAKV-SSGAGGFAN 146

Query: 126 SILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           ++LR+V+R+++                +  +     P W  + L +  G + +  +  A 
Sbjct: 147 AVLRQVARQELTEWIARVAPDPRVAPTRFASIAYSHPRWIVDELRSAVGADELFELLAAD 206

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             P  + L  +        +L     P     +         +P  AEG   VQD  + +
Sbjct: 207 NEPPRVTLVARPGRSG-REELPGEPTPYSPYGVVLGGGDPGEIPAVAEGRAGVQDEGSQL 265

Query: 233 PVQLFGTL----NNLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
                        +   LDLCA PGGK+    A     GA++ A +  + R   +   L 
Sbjct: 266 VAAALAAAPIEGPDRRWLDLCAGPGGKSALLAALAAQRGARLVAAERQEHRTRLVLRALR 325

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                A  +          +  FD VLVDAPC+  G +RR P+  W R  DD++     Q
Sbjct: 326 DAPGVAGIVTSDGTAPPFAEGTFDRVLVDAPCTGLGALRRRPEARWRRRADDLLSLVLLQ 385

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL   +  V+PGG+VV++ CS    ++  VV  VL S        P ++         
Sbjct: 386 RRLLSSALDLVRPGGVVVYATCSPVISETRGVVSSVLESRDDA---EPGDTRSLLPAIPG 442

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 G +++ P           G D  F   LRR  
Sbjct: 443 CEGPMPGTVQLWPH--------RHGTDAMFLALLRRTA 472


>gi|124023762|ref|YP_001018069.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
 gi|123964048|gb|ABM78804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
          Length = 450

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 115/464 (24%), Positives = 181/464 (39%), Gaps = 60/464 (12%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+  R V+  LL  V          L+     +    +S  D+ LV  +    +R    
Sbjct: 16  PGLLPRRVAWELLQAV-AAGAYADVALERALRQNP---MSGADRGLVMELAYGAIRQRQW 71

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +DA LD +      ++   L+ LL + + QIL +  +   A V+ +VE AK  K  R  A
Sbjct: 72  LDAWLDRLGKVPACKQPPVLRWLLHLGLYQILRMQRIPAAAAVNTSVELAKTGKLAR-LA 130

Query: 122 KLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            +VN ILR   R +   +          R+A    +P W  E+L  + G+      + A 
Sbjct: 131 PVVNGILRAALRARDAGMVLLEPEDSAARLAQAESLPLWLVEQLLVWRGEVGAELFARAS 190

Query: 173 ISPLYIDLTVKFDI----------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
                +DL +              E    +   +     G+ +      +   PG+ +G 
Sbjct: 191 NQVPTLDLRINRRRTSRENVRLALEAIGVESTPIESCPDGLMVTGSAGDLSQWPGYQQGH 250

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           W VQD SA +   L G      +LD CAAPGGK   L   +    +V A+D S  RL++L
Sbjct: 251 WCVQDRSAQLVAPLLGPQPGDRILDACAAPGGKATHLVELMGGSGEVWAVDRSAGRLKRL 310

Query: 280 RCNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
             N  RL       +  DA +        +  F  +LVDAPCS  GT+ RH D  W    
Sbjct: 311 AENAARLGGDCLHALVADATNLLAVKPSWRGSFQRILVDAPCSGLGTLARHADARWRVTP 370

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
             +      Q KLL   +  +  GG +V++ C++   ++ + ++  L   P         
Sbjct: 371 LQVEGLVILQSKLLEGLLPLLSSGGRLVYATCTIHPAENFDQIKAFLGRHPE-------- 422

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                       LS     ++ PD          G DGF++  L
Sbjct: 423 ------------LSLSQEQQLWPD-------PEHGGDGFYSAVL 447


>gi|78185142|ref|YP_377577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           CC9902]
 gi|78169436|gb|ABB26533.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           CC9902]
          Length = 445

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 188/466 (40%), Gaps = 60/466 (12%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R ++  +L  V          L+    D   R     D+ L   +    +R    +
Sbjct: 8   GIAPRQLAWKVLQAV-AAGAYADVALERCLRDHPLRG---PDRGLATELAYGAIRQRRVL 63

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
           D  LD +      ++   L+ LL V + Q+L +  +   A V+  VE AK     R  A 
Sbjct: 64  DGWLDRMGKVPASKQPPKLRWLLHVGLYQLLLMERIPSAAAVNTTVELAKVSGLGR-LAP 122

Query: 123 LVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +VN +LR V R                R+A  + +P+W    L  + G+E   A++ AC 
Sbjct: 123 VVNGLLRGVLRAHEAGEMLELSADPAIRLAQQTSLPDWLAASLIQWRGQEGAAAVAAACN 182

Query: 174 SPLYIDL----------TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
               +DL           V  D+     +   +     G+++      + + PG+ EG W
Sbjct: 183 YVPDLDLRINRLRSTPEQVGRDLAEAGIETRPISGCADGLQVLGHSGDLRNWPGYVEGHW 242

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD +A     L        VLD CAAPGGK   L   +    ++ A+D S  RL+++ 
Sbjct: 243 CVQDRAAQWVAPLLEPKPGDRVLDACAAPGGKATHLAELMGDVGEIWAIDRSAGRLKRVA 302

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            N  RL L +   +  DA     ++      F ++L+DAPCS  GT+ RHPD  W     
Sbjct: 303 VNAARLGLGSIQALAADAAQLSRERPEWNETFQSILIDAPCSGLGTLARHPDARWRMTPK 362

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I +    Q+ LL   +  + PGG +V++ C++   ++ + V  +L              
Sbjct: 363 AIQELLPQQQALLDGLVPLLAPGGRLVYATCTMHPAENAQQVANLLSRCSE--------- 413

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      L+ E   +  PD          G DGF+A  L+R+
Sbjct: 414 -----------LTLEREQQRWPD-------AEEGGDGFYAAVLQRV 441


>gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
 gi|158446235|gb|EDP23230.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
          Length = 434

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 100/456 (21%), Positives = 191/456 (41%), Gaps = 48/456 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R ++  +L  +  +  + T LL+    +     +S  D   +R IV  TL     +D ++
Sbjct: 2   RKLAIEILCEIKDENSNSTNLLNKSTKN-----ISDLDSKFLREIVYGTLENRIYLDYII 56

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
             +    + +    +  +LR+S+ QI+++D + ++A+++ AV   K  K  + F+  VN 
Sbjct: 57  KKLCKLRIKKFNPYILNILRISIYQIIFMDKIPEFAIINEAVNLTKVFKL-KKFSSFVNG 115

Query: 127 ILRRVSREKIELLQR--------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            LR   R K + ++         I+          + L   YG+E  + I +  ++  + 
Sbjct: 116 SLRNFLRNKEDFMKIKVESEEEAISIKYSANMDIVKLLLGDYGREETIKILENSMTKPHF 175

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGG------IRLKELPESIVSLPGFAEGVWWVQDAS 229
            + +       E     L                   E P +I+    F  G + VQD  
Sbjct: 176 AIRISSFEKTEEKVVKDLEKDGYKLKKSEISKLTYFVENPTNILETESFKSGDFTVQDVG 235

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +  ++     N  VLD+C+APGGKT      + +  ++ A D+ K +L+K+  N  RL
Sbjct: 236 SILTGEILAPKENSKVLDICSAPGGKTCHLAFQMKNSGEIFANDIVKSKLKKIEENCKRL 295

Query: 287 HLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           ++    ++  DA  Y  +       +L D  CS  G + R P++   R  + I +    Q
Sbjct: 296 NVQNVKLLNFDASIYKEEYKEQFGYILCDVICSGIGVMDRKPEIKLFRSQETIDEIIELQ 355

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           RK+    + ++K  G +V+S CS+ K ++EE V+  L                 K  D+ 
Sbjct: 356 RKIFDNAVEYLKDKGEIVYSTCSVLKCENEENVKYFLEKHKN-----------LKIKDVE 404

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                E +I++ P+  +         +GFF +   +
Sbjct: 405 FLGKSEKFIKLLPEKQK--------HNGFFIIKFVK 432


>gi|332289287|ref|YP_004420139.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179]
 gi|330432183|gb|AEC17242.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179]
          Length = 440

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 118/461 (25%), Positives = 205/461 (44%), Gaps = 40/461 (8%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK      M  R V + ++  V+ +  SL+ LL      +A + +S +D  L++ +    
Sbjct: 1   MKPQLSKKMPLRAVMAEVILQVLDQGKSLSSLLP-----AAQQRISAQDMGLLQEVCFGV 55

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
            R LPR++ ++  ++   L  K   +  LL V + Q+LY  +  +A VD  V+ A    +
Sbjct: 56  CRVLPRLERIIGKLVAKPLKGKTRIVHCLLLVGLYQLLYTRIPAHAAVDEVVK-ATAVLK 114

Query: 117 NRHFAKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGK-ERVLAISDACI 173
              F  LVN ++RR  RE+  +  +      ++ PEW    L++ Y +  R +   +   
Sbjct: 115 VESFRGLVNGVMRRFLREQASILAVIDKHWQTLHPEWLVNLLKSCYPQNWRQIVEENNQK 174

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQD 227
            P+++ +  +        +L A                 +   ++  LP F +G   VQD
Sbjct: 175 PPMWLRVNHQHCSTEQYQQLLAQQHIASESAQPPSALRLQNAIAVEQLPNFEQGWVSVQD 234

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLDR 285
             A     L    NN ++LD CAAPGGKT  ++    +    ALDV   RL+++  NL R
Sbjct: 235 CHAQWAALLLDGQNNETILDACAAPGGKTTHILELAPQAVVTALDVEAGRLQRVEQNLQR 294

Query: 286 LHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L+ +A  I               +FD +L+DAPCS+TG IRRHPD+ W R   DI +   
Sbjct: 295 LNQHANVICGDASQPQQWLQDGAMFDRILLDAPCSATGVIRRHPDIKWLRQPSDIEQLVA 354

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+++L      +K  G+++++ CS+  Q++ E ++  L +     +L+ ++        
Sbjct: 355 LQKQILQALWQRLKVNGVLLYATCSILPQENSEQIRSFLATH-SDAKLIAVDLGE----- 408

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
               +      +  P           G DGFF   L +  +
Sbjct: 409 --QGIDTGFGFQCFPH--------QQGGDGFFYAKLVKQAE 439


>gi|254525327|ref|ZP_05137382.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas
           sp. SKA14]
 gi|219722918|gb|EED41443.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas
           sp. SKA14]
          Length = 443

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 188/453 (41%), Gaps = 38/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G   R++++ +L+ V  +  SL   L       A      RD+ L+ A+    LR   
Sbjct: 13  APGAATRMLAARVLAQVFTRGRSLKAELAWALPKLA----DSRDRALLEALCFAVLRRRS 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             DA L   +   L  +   L+ LL V  AQ+  L++  +A +   V+ A+     R  A
Sbjct: 69  TYDAALQSWMQKPLSARDADLRTLLMVGFAQLDVLELPAHAALSATVDAARALGRERQ-A 127

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--D 179
            LVN+ILRR  RE              PEW  E +E  +  +     +++          
Sbjct: 128 GLVNAILRRAQREGFPEQPA---RDAFPEWLAEAIERDWPAQAEAVFNESLQPAPLWLRA 184

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233
                  +     L    +      L         P ++  LPGFAEG   VQD SA   
Sbjct: 185 NRQHGGRDKALAALAEAGIAAETSALSPDALRLAAPVAVNQLPGFAEGALSVQDLSAQCA 244

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHL--- 288
                      VLD CAAPGGK+A L+      ++ ALD+  RRL + R    R  +   
Sbjct: 245 ADALAPAAGSRVLDACAAPGGKSAHLLERDPSLRLLALDIDARRLARARDTYARTGVGEH 304

Query: 289 -YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                    D   +     FDA+L+DAPCS+TG IRR PDV++ R  +DI      Q +L
Sbjct: 305 AQTLVADASDPGSWWDGVPFDAILLDAPCSATGVIRRQPDVMFHRRAEDIDALVGVQARL 364

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    S ++PGG+++++ CS+ + ++ + V+  L+  P          A  + +  A  +
Sbjct: 365 LEACWSMLRPGGVLLYATCSILRAENIDQVRAFLKWHPD---------AEAQPLGDAFGV 415

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             EG  R       +     +  DGFF   L +
Sbjct: 416 DCEGVAR-------QRLPGDNDADGFFYARLIK 441


>gi|295105557|emb|CBL03101.1| ribosomal RNA small subunit methyltransferase RsmB
           [Faecalibacterium prausnitzii SL3/3]
          Length = 443

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 92/441 (20%), Positives = 175/441 (39%), Gaps = 39/441 (8%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
            +      +LD E      + L  RD+    AI    L     +D +L+  L   L +  
Sbjct: 17  EQDGFSNLVLDAELKR---QKLEGRDKAFASAIFYTVLEHRGTLDYILEQFLPKGLAKLD 73

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             ++++LR ++AQ  Y+ V   A V+ AV+  +  K++   + LVN++LR+     ++  
Sbjct: 74  APVREILRAALAQARYMQVPVSAAVNEAVKLTRTFKKS-SASGLVNAVLRKACGYDLDAA 132

Query: 140 QRIAGISII-----PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194
                I  +           +  +    +  L I           L     ++  A +L 
Sbjct: 133 VFTGEIQRLMVLGSAGLDVAKFLHKNYPDEALGILTYQADGGLTSLRANP-LKASAAQLC 191

Query: 195 AVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           A++   G   +++             S      F +G + V+  ++ +     G     +
Sbjct: 192 ALLTEQGAAEVRQGIVPGSVLARFAGSPADNELFRQGYYHVEGQASQLAALCVGAAPGET 251

Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLDLCAAPGGKT    + +    ++ + D ++ R+  +R  +DR+       +  DA   
Sbjct: 252 VLDLCAAPGGKTILLAEQMQGTGELYSCDAAENRVGLIRTAVDRMGFTGVHTLCNDATKP 311

Query: 302 CPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDT-DDIVKSACFQRKLLLQGISFVKPGG 359
            P     D +L D PCS  G + + PD+ + +       +    Q  +L    + +K GG
Sbjct: 312 NPALPMADRILTDVPCSGLGILAKKPDLRYKKLEAARQAELLATQAAILDTAAALLKAGG 371

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+S C++D  ++++ +   L+  P      P        +   M     G + +    
Sbjct: 372 RLVYSTCTIDPAENQKQIAAFLQRHPEFAVCAPDVP-----LPAGMTAGEYGCLSV---- 422

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
                   +GMDGFF   L++
Sbjct: 423 -----PTRTGMDGFFLCVLQK 438


>gi|114330411|ref|YP_746633.1| sun protein [Nitrosomonas eutropha C91]
 gi|114307425|gb|ABI58668.1| sun protein [Nitrosomonas eutropha C91]
          Length = 426

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 105/447 (23%), Positives = 193/447 (43%), Gaps = 42/447 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           L++   +  V     +L  +L   +  ++   L+ + +  ++ I   TLR   ++DA+L 
Sbjct: 6   LLAIQAIGEVFA-GANLNEVLRNIWQINS--RLTPQQRGAIQDIAYGTLRHYGQLDAILH 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +L      +  SL  LL +++ Q+ Y     +A+VD AV  +++   N   + L+N++L
Sbjct: 63  QLLNKP--AQDKSLHYLLAIALYQLCYSKAPAHAIVDHAVSSSRKITRNPAASGLINAVL 120

Query: 129 RRVSREK----IELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLT-- 181
           R   R++     ++          P+W+ ++L   Y ++ + + ++      + + +   
Sbjct: 121 RNFMRQRTLLLDQIKSNEVARYSYPQWWIDKLRQQYPQDYKAILLAGNEHPAMILRINSL 180

Query: 182 ---VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
              V         +        G       P S+  LPGF+EG+  VQDA A     L  
Sbjct: 181 RTSVNHYQAMLDAQGIGSEWLGGSALQLIRPVSVEKLPGFSEGLVTVQDAGAQFAAPLLD 240

Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
               + VLD CAAPGGK+     +    K+T LD  + RL +L  N  RL +    +I  
Sbjct: 241 VKAGMRVLDACAAPGGKSTHLAELTENIKLTVLDKYEDRLTRLTENFSRLQITDYQLICG 300

Query: 297 DAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           DA     +   +L+D +L D PCS++G + RHPD+ W R   D    A  Q  +L +   
Sbjct: 301 DAMNPSQWWNGQLYDRILADVPCSASGVVNRHPDIKWLRRPGDTDNFAQIQTTILNELWP 360

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++ GG ++++ CS+  +++  + +K L        L P +     +             
Sbjct: 361 LLRHGGKLLYATCSVFNEENNLITEKFLSIHQDASRL-PCSHEEINNG------------ 407

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++ P             DGFF   L++
Sbjct: 408 QLLPGPH---------HDGFFYALLQK 425


>gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           WH 7803]
 gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           WH 7803]
          Length = 447

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/461 (23%), Positives = 180/461 (39%), Gaps = 61/461 (13%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+ +R V+  +L  V          L+          L   D+ L   +    +R+  
Sbjct: 10  TPGLASRRVALEVLEAV-AAGAYADVALERALRQHP---LQAADRGLATELAYGAIRWRQ 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA LD +      ++   L+ LL + + Q+L +  +   A V+  VE AKR K  R  
Sbjct: 66  WLDAWLDKLGKVPARKQPPRLRWLLHLGLYQVLRMERIPAAAAVNTTVELAKRGKLAR-L 124

Query: 121 AKLVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           A +VN +LR             +  +    +A    +P WF + L  + G  +   ++ A
Sbjct: 125 APVVNGLLRAALRAREAGDGLVQPTDPALALAQNQSLPLWFTQDLLRWCGPAQAAQVAQA 184

Query: 172 CISPLYIDLTVKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAEG 221
           C     +DL +     + A              A+     G+++      +   PG+ EG
Sbjct: 185 CNQVPPLDLRINRLRSSPAEMAARLAECSMPTAAIPGCPDGLQVLHSAGDLRQWPGYEEG 244

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            W VQD +A     L        VLD CAAPGGK   L   +    +V A+D S  RL++
Sbjct: 245 HWCVQDRAAQWVAPLLAVEPGQRVLDACAAPGGKATHLAELMGDQGEVWAVDRSGGRLQR 304

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  N  RL     + +  DA     ++      FD +L+DAPCS  GT+ RHPD  W   
Sbjct: 305 VAANAARLGCGCINALAADAAQLLEERPQWRASFDRILLDAPCSGLGTLARHPDARWRIS 364

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
              I      Q  LL   +  +KPGG +V++ C++   ++ E +   L+  P        
Sbjct: 365 EASIADLVKLQAGLLDALVPLLKPGGRIVYATCTVHPAENTEQIHGWLQRHP-------- 416

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
                               ++     ++      G DGF+
Sbjct: 417 --------------------QLVLASEQQRWPDPQGGDGFY 437


>gi|329122539|ref|ZP_08251122.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
 gi|327473144|gb|EGF18568.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
          Length = 451

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 214/457 (46%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  V+   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRVVEKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P++I +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWIRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    + +               ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRSLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+D+PCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+ L  +  KS     
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-TDAELLSLPFSDDKSAV--- 427

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +  P          +  DGF+   L +  
Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|319775433|ref|YP_004137921.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           influenzae F3047]
 gi|317450024|emb|CBY86238.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           influenzae F3047]
          Length = 451

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 215/457 (47%), Gaps = 41/457 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  V+   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRVVEKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF  +L+  Y   R +  ++    P++I +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWIRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    + +               ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRSLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292
            L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+  A  
Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311

Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q+
Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+L      +KP G+++++ CS+  +++ E +Q+ L +     EL+ L  +         
Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENYEQIQEFLNAH-ADAELLSLPFS--------- 421

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +     +  P          +  DGF+   L +  
Sbjct: 422 DDTSAVGFQFIPQ--------PNSGDGFYYAKLLKRA 450


>gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
 gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
          Length = 444

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 199/457 (43%), Gaps = 33/457 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N R +    L  +  +      ++D+      +  LS+ D+     +V+  + + 
Sbjct: 1   MEK-TNIRTLILEALMLIDVEGEYSHKVIDMALE--KYSYLSKADRGFFSKVVHGVVEYR 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D ++     +   R K  ++++LR+++ QILY+D V D A+++ AV   K  +    
Sbjct: 58  LQLDFIIKKY--NGGKRIKPVIREILRMAIYQILYMDRVPDRAIINEAVNLVKLRRLTA- 114

Query: 120 FAKLVNSILRRVSREKIELLQRIA-GISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
               VN ILR++S EK  +          +PE+  + ++   GK     + +  +    +
Sbjct: 115 LTGFVNGILRKISSEKETVSFDNIGIRYSMPEFLLDIIKENTGKYFDKTL-EYFLEGRPV 173

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---------GVWWVQDAS 229
            + V          +  +           L ++++ + GF +         G  ++ D S
Sbjct: 174 SIRVNTSKSKVTDVVKELEESNIRAERSSLNDAVLYIRGFDKVDDISVIKSGKCYITDVS 233

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           +S+  +L    N   VLD+CAAPGGK+      I + A + + D+S+ ++  +  N    
Sbjct: 234 SSMIAELIIPDNIKKVLDVCAAPGGKSFLLADKIDNEALIYSCDISENKVNLITENAKVQ 293

Query: 287 HLYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                  +  DA  +  +    D V+ D PCS  G I + PD+ +  + ++++  A  Q+
Sbjct: 294 GFKNIIPLVADARVFNERFAESDLVVADLPCSGIGIIGKKPDIKYRLNAENMISLAILQK 353

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L     +VK GG ++FS C+L+K ++EE V   L++     + V L       +    
Sbjct: 354 EILDNVSQYVKIGGELIFSTCTLNKAENEENVSLFLKNHSN-FKAVDLTKRLKSILIEKF 412

Query: 406 ALS--PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +G++++ P           G DGFF    RR
Sbjct: 413 DKDELEKGYLKLIPG--------RDGCDGFFIAVFRR 441


>gi|85710227|ref|ZP_01041292.1| tRNA and rRNA methylase [Erythrobacter sp. NAP1]
 gi|85688937|gb|EAQ28941.1| tRNA and rRNA methylase [Erythrobacter sp. NAP1]
          Length = 414

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 212/440 (48%), Gaps = 33/440 (7%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +G++AR  +  +L  V+R+  +L         D         DQ L RAI    LR+L  
Sbjct: 5   TGIHARRAALKMLDAVLRRGETLEQAAPGALRDVR----DANDQALARAIAGEALRWLTD 60

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DA++D      LP      + +LR+ +AQ L L+   +AV+   +            + 
Sbjct: 61  LDALIDSATRQRLPD-DAKPRSVLRLMLAQALRLETPPHAVIATGLPL---------LSG 110

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
               +   V    ++    +  +  +PE  +ER       +R + I+   + P  +DL +
Sbjct: 111 GPRRLAHGVFSTLMKREVALPDVPTLPENVRERWG-----DRAVEIAPGLVHPPEVDLHI 165

Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           K   +T  W  KL    L  G +R+      I SL G+ +G WWVQD +A IP  + G  
Sbjct: 166 KDAKQTPQWQAKLGGESLAPGHVRIPRGS-RIESLDGYKDGAWWVQDLAAMIPSMVIG-E 223

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
                LDLCAAPGGKT  L  +G  VTALD+SKRRL  L+ NL R  L A  +   DA  
Sbjct: 224 GKGHALDLCAAPGGKTMALASAGWDVTALDISKRRLGTLKENLKRTGLKASPVR-ADAMQ 282

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + PK  FDA+L+D PC++TGT RRHPDVL       I +    QR L+ +    +KPGG 
Sbjct: 283 WEPKHHFDAILLDTPCTATGTCRRHPDVLHRIGARQIAEMVEIQRGLVARAAELLKPGGT 342

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CSL++++ EE    +       + L P+  A    +   +A + +G +R  P ML
Sbjct: 343 LVYAVCSLEREEGEEQATWI----DSELGLQPMPIA-ADELPAGLAPTAQGHVRTHPGML 397

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   G+DGFF    R+
Sbjct: 398 ----PEQGGLDGFFVARWRK 413


>gi|315655374|ref|ZP_07908274.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii ATCC 51333]
 gi|315490314|gb|EFU79939.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           curtisii ATCC 51333]
          Length = 523

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 107/471 (22%), Positives = 181/471 (38%), Gaps = 47/471 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+   L  V +       +L      +    L +RD      +V  TLR   R DA
Sbjct: 45  PARDVAFQALRRVDQDHAYANLVLPGLIERAR---LHRRDAAFATELVYGTLRLQGRYDA 101

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++  +    +      L  +LR+ + QIL + V DYA VD  V+ A RD+ +   A +VN
Sbjct: 102 IIGLLSDRDIAALDPELVTVLRMGIHQILQMRVEDYAAVDTMVDLA-RDRLSAGPAGMVN 160

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169
           ++LR+V+   +                 +     PEW    L +           +  + 
Sbjct: 161 AVLRKVTEHDLSYWLDAITSGLTGEKALSRAFSYPEWIVWALRDALVATGRDAGDLPGLL 220

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220
            A   P Y+ L  +  + +      A                  +         L     
Sbjct: 221 HAQNRPAYVTLCARPGLISADELATAAETYLDADTRLGELSDCAVVLSGGDPRRLRAVER 280

Query: 221 GVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272
           G+  V+D  + +  ++           + +DLCA PGGKTA            V A +VS
Sbjct: 281 GLAGVEDEGSQLVAKVLAAAPVTGVERTWVDLCAGPGGKTALLAGLARSRDVSVIANEVS 340

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             R E +R +          +++ D  D+        D VLVDAPCS  G++RR P+  W
Sbjct: 341 PHRAELVRDSTKAFTDQIVQVLQGDGRDFGRLHPGKADRVLVDAPCSGLGSLRRRPEARW 400

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            +   D+      Q++LL   +  VKPGG+V ++ CS    ++ +VV+  +++      L
Sbjct: 401 NKSATDLKDLTALQQELLRSALETVKPGGVVGYATCSPHLAETRQVVETTVKNRADLRVL 460

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                A    ++    L P  ++++ PD          G D  F   +++ 
Sbjct: 461 DAPAVAREIIVNPEHDLGPGPYLQLWPD--------RDGTDAMFLALIQKK 503


>gi|332559578|ref|ZP_08413900.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N]
 gi|332277290|gb|EGJ22605.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N]
          Length = 410

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 137/434 (31%), Positives = 212/434 (48%), Gaps = 29/434 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  LL  V+ +   L+  L    G +A    ++      + + +  LR L   D +
Sbjct: 5   ARGMAVTLLDAVLGEGKLLSQALADLPGAAAPAERARA-----QRLASSVLRHLGPADRL 59

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   L  + P    +++ +LR++  ++     A + VV  AV+ A+R +  +H A LVN+
Sbjct: 60  LAPHLRKAPP---LTVRNILRLATVEMAADGAAPHGVVSSAVDLARRGRRTQHLAGLVNA 116

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           +LRR++      L        +P W ++ L   +G+  V AI     +P  +DLT +  +
Sbjct: 117 VLRRIAPASFAGLP----AQHLPMWLRQPLVRRWGRAVVTAIEAVQAAPPPLDLTARPGL 172

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                 L               P  + +LPG+  G WWVQDA+A++ V+L       SV 
Sbjct: 173 SAPGEPLPTGSFRL------RAPGQVSALPGYEAGEWWVQDAAAALAVKLLDPQPGESVA 226

Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           DLCAAPGGKT QL  +GA+VTALD+S+ RL +LR NL R  L AE +             
Sbjct: 227 DLCAAPGGKTLQLAAAGARVTALDISEARLGRLRENLARTGLQAEVV--AADLLTWQGGP 284

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           F+A+L+DAPCS+TGTIRRHPD+ + +D  ++      Q  +L   +  + PGG +VF  C
Sbjct: 285 FEAILLDAPCSATGTIRRHPDLPFVKDGSELPGLVALQAAMLDHALHLLAPGGRLVFCTC 344

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL +++ E  +  +L   P      P              +  EG +R+ PD   +    
Sbjct: 345 SLLEEEGEAQLAALLERHPELTVEWPTLPGV-----EPDWIGAEGGLRLRPDFWAEA--- 396

Query: 427 SSGMDGFFAVALRR 440
             GMDGFF   +RR
Sbjct: 397 -GGMDGFFMARVRR 409


>gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 437

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 195/466 (41%), Gaps = 60/466 (12%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G   R  S  +L  V    I     L+    +  F  L   D   +  +    +R+ 
Sbjct: 1   MIKGYLQRKASWEILLKV-SSGIYSDHALEKVLKNYEFNSL---DIAFITELSFGCIRYR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  +D     S  ++   L+ LL + + Q+L +D +   A +   VE AK+    + 
Sbjct: 57  KFLDLWIDHTSKLSHTKQPPKLRWLLHIGLYQLLKMDKIPFSAAISSTVEVAKKTDL-KG 115

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN+ILR   R   +              + +  +P W  + + N+ G +    I+ 
Sbjct: 116 LAGTVNAILRNTVRHIEKEHVPKISSDEIERLSSLESLPIWLVKEIVNWVGIKEAKNIAK 175

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPT----------GGIRLKELPESIVSLPGFAE 220
           A      IDL +          LN +               GI L   P SI  LPG+++
Sbjct: 176 AFNKKPSIDLRINSLKTDLNKFLNELAECNINATAISQLKNGIALNSNPRSIKKLPGYSD 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLE 277
           G+W VQD S+     L   +    +LD C+APG KT  L       A++ A+D S++RL+
Sbjct: 236 GLWVVQDRSSQWVAPLLNPMKGEKILDACSAPGSKTTHLAQLANDDAEILAVDRSEKRLK 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTR 332
            L+ NL+RL++ +   ++ DA +    +      FD +L+DAPCS  GT+ R+PD  W+ 
Sbjct: 296 ILQSNLERLNIKSVKTLKADATNLVDIQPNLISYFDKILIDAPCSGIGTLARNPDSRWSL 355

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D I +    Q +LL   +  +K  G +V+S C++  +++  ++++ L  +        
Sbjct: 356 SKDKINQLILLQERLLESVLPLLKRNGTLVYSTCTICPEENNFLIKRFLTKNK------- 408

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                       + L  E   +I P             DGF+A  +
Sbjct: 409 -----------EIKLDSEK--QILP-------KFDEPGDGFYAAKI 434


>gi|260557781|ref|ZP_05829994.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii ATCC 19606]
 gi|260408572|gb|EEX01877.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii ATCC 19606]
          Length = 434

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +            + E    I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +       P   E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434


>gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa]
 gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 113/479 (23%), Positives = 187/479 (39%), Gaps = 61/479 (12%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDS-------------AFRLLSQRDQILVRAIVN 54
           R VS+  L  +         L D   G                 + L  RD  LV  IV 
Sbjct: 62  RAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 121

Query: 55  VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
            T+R+   +D ++  +     +    +  L Q+LR+   +I+ LD+  YAVVD  V  AK
Sbjct: 122 GTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVKLDMPSYAVVDENVRLAK 181

Query: 113 RDKENRHFAKLVNSILRRV--------------SREKIELLQRIAGISIIPEWFKERLEN 158
                     +VN ILR++                +     + +A +   P W   R   
Sbjct: 182 VSLRP-GAGNMVNGILRKLVLLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTK 240

Query: 159 FYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPT-------GGIRLKE 207
             G+E+ + +           L               + N + +P          +R+K 
Sbjct: 241 LLGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQFNMLKVPHELSLHLDHFVRVKT 300

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264
             + ++      +G+  VQD SA + V +       S++D CAAPGGKT  +   +    
Sbjct: 301 GLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMHGQG 360

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGT 321
            + A+D++K RL  ++       +         ++  F    +   D VL+DAPCS  G 
Sbjct: 361 MLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLDAPCSGLGV 420

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + +  D+ W R  +D+ +    Q +LL      VKPGG++V+S CS+D +++EE V   L
Sbjct: 421 LSKRADLRWNRRLEDLEELKKLQEELLDAASILVKPGGVLVYSTCSIDPEENEERVDAFL 480

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              P    + P++            ++  G+           D V   MDG FA  L R
Sbjct: 481 LRHP-EFRIDPVDRYVP-----PDFVTKRGFY--------SSDPVKHSMDGAFAARLIR 525


>gi|227904234|ref|ZP_04022039.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
           acidophilus ATCC 4796]
 gi|227867882|gb|EEJ75303.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
           acidophilus ATCC 4796]
          Length = 446

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/465 (24%), Positives = 201/465 (43%), Gaps = 48/465 (10%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK      +AR +S   L  V+         L+    +S    L+  DQ L   IV  T+
Sbjct: 1   MKKLSTSKSARAISLETLIKVLGNGSYSNISLNNSLKNS---DLAIADQNLATRIVYGTI 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
           ++   ++  L+ ++ + L  K   ++ LL +S+ QI++LD V + A++D A + AK+  +
Sbjct: 58  QYRIFLEYQLNGLIKTKLTEK--YIKPLLLMSLYQIIFLDKVPNRAILDEANKLAKKFGK 115

Query: 117 NRHFAKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
           +      + + + R          +K   ++ ++    +PEW  + L + +G E+  ++ 
Sbjct: 116 HHSSGYRIVNGILRSFIRRGVILPDKNNEIEYLSIKESVPEWLVKYLISNWGIEKTKSVL 175

Query: 170 DACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGV 222
            +   P    + +++  D +    +L+          L           +     F  G 
Sbjct: 176 SSINEPAKNSVRISMFSDKKKVFEELDNEGFNPNWSNLSANDIVLDHGGVSQSNLFKSGN 235

Query: 223 WWVQDASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278
             +QD +AS  +    F       VLD C+APGGKT Q         VTALD+ +++L  
Sbjct: 236 LTIQDEAASLVVEAFDFDKDKPEHVLDACSAPGGKTVQLAESFKNGTVTALDIHEKKLRL 295

Query: 279 LRCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           ++ N  R+H+         DA +         F  +LVDAPCS  G +RR P++ +T+  
Sbjct: 296 VKENAKRMHVSDKVKTQACDAREAQARFDAGEFTKILVDAPCSGLGLLRRKPEIRYTKSL 355

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D+      Q  +L      +   G +V+S CS+  +++E+VV+K L++     EL P  
Sbjct: 356 KDLKNLQKIQLAILDSVSLLLHVNGELVYSTCSISMEENEDVVKKFLQTHSN-FELKPFK 414

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            +  +        S  G ++I PD          G DGFF    +
Sbjct: 415 LSKLE--------SKTGMLKIMPD--------QDGNDGFFIAKFK 443


>gi|184159973|ref|YP_001848312.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU]
 gi|183211567|gb|ACC58965.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU]
 gi|322509890|gb|ADX05344.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii 1656-2]
          Length = 434

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ + +          + E    I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQSRACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGK A        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKMAHLLEKFKPAQLIAIDQDPSRLVRVIENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +       P   E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434


>gi|296114826|ref|ZP_06833475.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295978640|gb|EFG85369.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 438

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 139/441 (31%), Positives = 212/441 (48%), Gaps = 27/441 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                 R ++  +++ V+  R  L   ++        R    RD+     +    LR + 
Sbjct: 22  APADPTRDIAFDIVTGVIEHRRMLETSMEN---SPVARQAEPRDRAAAHRLGASVLRHMG 78

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
               VL   L    P     ++ +L + VAQ+L+L    +A V  +V  A+R +    FA
Sbjct: 79  TATEVLSPFLKKEPPE---PVRAVLLIGVAQLLFLGTPVHAAVATSVALARR-RGLAPFA 134

Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR++++    L  +      +P W                I+ A  +   +DL
Sbjct: 135 GLVNAVLRRIAQKGDGCLDGLDQERLDVPPWLWASWGRM-----ARPIAAALGTEPPLDL 189

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +++             +LP G +R       +  LPGFAEG +WVQDA+AS+P +L    
Sbjct: 190 SMRPG---CLPPPGGELLPNGTVRFAAGT-RVTELPGFAEGAFWVQDAAASLPARLLDAK 245

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAF 299
               V DLCAAPGGKTAQL ++GA VTA++   RRLE+L  NL RL L     +++ DA 
Sbjct: 246 AGERVADLCAAPGGKTAQLALAGADVTAVERDPRRLERLGANLARLQLGDVVKVVQADAT 305

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            + P    DAVL+DAPCS+TGT+RRHPD LW +   D+   A  Q+ LL      ++PGG
Sbjct: 306 QWRPDAPLDAVLLDAPCSATGTVRRHPDALWIKRPRDLAALAAGQQALLKAAGDMLRPGG 365

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V++ CSL  ++           +   + L+       +   +  A +PEGW+R  P M
Sbjct: 366 RLVYAVCSLQPEEGPA-----CARAAEEMGLIADPFTPEELAFLPQARTPEGWVRTHPGM 420

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
             +      GMDGFFA   R+
Sbjct: 421 WAE----QGGMDGFFAARFRK 437


>gi|257055599|ref|YP_003133431.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM
           43017]
 gi|256585471|gb|ACU96604.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM
           43017]
          Length = 484

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/466 (21%), Positives = 163/466 (34%), Gaps = 46/466 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR  +   L  V  +      +L         R ++ RD  L   +   T R    
Sbjct: 35  TRDPARRAAFDALRAVTERDAYANLILPELLR---QRRITGRDAALATELTYGTARATGL 91

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DA++   +   L      ++  LR+   Q+L   +  +A V   V+  + D  +R  A 
Sbjct: 92  LDAIVARCVDRKLDTVDPVVRDALRLGAYQLLRTRIPHHAAVASTVDLVREDAGSR-VAG 150

Query: 123 LVNSILRRVSREKIELL------------QRIAGISIIPEWFKERLENF--YGKERVLAI 168
            VN++LRRVS +  +                +A  +  P W             + + A 
Sbjct: 151 FVNAVLRRVSEKDEQQWLAELTADSSDPLADLALRTSHPRWIARAFAEALGDKGDELRAA 210

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVM-----LPTGGIRLKELPESIVSLPGFAEGVW 223
            +A  +   + L  K    +                  G+ L      +       EG+ 
Sbjct: 211 LEADDARPAVHLLAKPGQISAEELAAITGGDVAPYSPYGVHLPSGGGDLAESEVIEEGLA 270

Query: 224 WVQDASAS--------IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKR 274
            VQD  +          P+       +   LDLCA PGGKT  L      + A  D  + 
Sbjct: 271 TVQDEGSQLVAVASVNAPLGDAADGRDTRWLDLCAGPGGKTVVLGCLAQTMGATVDAVEV 330

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
              + R   +        +   D         +D VLVDAPCS  G +RR P+  W +  
Sbjct: 331 AEHRARLVREATDGLPVTVHVTDGRAPELDGDYDRVLVDAPCSGLGALRRRPEARWRKQP 390

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            DI +    Q +LL      V+PGG+V +  CS    ++E VV    +   +  EL+   
Sbjct: 391 GDIAELTRLQTELLASAYRLVRPGGVVTYVVCSPHLAETEGVVMASAQR--LGAELIDAR 448

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A+     +    +    +++ P           G D  F   LR+
Sbjct: 449 VAFPGVPHLGDGPT----VQLWPH--------RHGTDAMFCAMLRK 482


>gi|148272956|ref|YP_001222517.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830886|emb|CAN01830.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 499

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/468 (23%), Positives = 170/468 (36%), Gaps = 47/468 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  ++S V         LL +    +A   LS +D  L   +   TLR     D 
Sbjct: 45  PARRVAYEVVSAVRESDAYANLLLPVRIRRAA---LSAQDAALATELAYGTLRMSGYYDR 101

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V++      +      +  +LR+SV Q+L + VA +A V+  V+ A+    +R     VN
Sbjct: 102 VIELAAGRPVTAIDAPILDVLRLSVHQLLSMRVATHAAVNEGVDMARAV-GSRSATGFVN 160

Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE----RVLAIS 169
            +LR ++R +    ++             A     P W    L     +E     +  + 
Sbjct: 161 GVLRTITRSEPAEWRQRVLDSAASDDERLALEHSHPLWVLRALRQALAREGRADELEDLL 220

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            A  +   + L     + T   +          +         +  PG AEG   VQD  
Sbjct: 221 RADNAAPAVSLVALPGLATV-EETQEQPAAFSPVGAYLEGGDPMDAPGVAEGRVRVQDEG 279

Query: 230 ASIPVQLFG----TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           + +                 LDLCA PGGK A L     +  AL ++   L   R  L R
Sbjct: 280 SQLAALALSRARAVTPGERWLDLCAGPGGKAALLAAEAGRSGAL-LTANELVPARAGLVR 338

Query: 286 LHLYAE----DIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             L A     ++ E+D           FD +L+DAPCS  G +RR P+  W +   D+  
Sbjct: 339 DALRAVAGDTEVWELDGTTVGESHPGAFDRILLDAPCSGLGALRRRPEARWRKTPRDVAG 398

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI------PVELVPL 393
               Q  L+   I  + PGGI+ +  CS    ++  +VQ  L+  P          L  +
Sbjct: 399 LGALQTGLIDSAIGALAPGGILAYVTCSPHLAETRAIVQAALQRHPDVTALDTRAVLQEV 458

Query: 394 NSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +  D        G  +++ P           G D  F   L R
Sbjct: 459 ADGDLELPDADPDAGARGSSVQLWPH--------RHGTDAMFIALLTR 498


>gi|116618607|ref|YP_818978.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116097454|gb|ABJ62605.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 448

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/458 (24%), Positives = 195/458 (42%), Gaps = 44/458 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R+++   L+ + +        L+          L + D  L+  +V   ++     + 
Sbjct: 10  NPRVLAVQTLAKI-KNGAYSNLQLNQVIKQHK---LGEADTRLLTTLVYGVIQHRLTFEY 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L+  + S   +    +++LL  ++ Q+ YLD +  +A+ + ++E AK    +    K V
Sbjct: 66  WLEPFVGS--KKIDPWVRELLYTAIFQMEYLDKIPQHAIFNESIEVAK-ILGHVGTGKFV 122

Query: 125 NSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +IL  +SR       +  + +QR++  + +P W  E L    G ER   I         
Sbjct: 123 TAILHNISRKGLRSVADIGDDIQRLSIEASLPVWLVEELIKQNGDERARQIIATINDAPK 182

Query: 178 IDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V   + T    + A                        + S   + +G   +QD S
Sbjct: 183 QSIRVNTLLATDQEVVTALESENFTITASSVAAHAFLVSGGHVASSKAYHDGWLTLQDES 242

Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285
           A +PV+       +  + D  AAPGGKT QL       A +TALDV + +++ +  N +R
Sbjct: 243 AMLPVESLHLTPEVKSILDAAAAPGGKTTQLAQYSAPDAVITALDVHEHKIKLINNNAER 302

Query: 286 LHL-YAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           LH+        +DA        K FD +LVDAPCS  G +RR P++ + +  +D+   A 
Sbjct: 303 LHVADKIHARVLDARKVPEQIDKKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVESLAR 362

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      +   GI+V+S C++ +Q++++VV   L   P   EL+P  + Y   +D
Sbjct: 363 LQTQILDSVSQNLAKNGIMVYSTCTILRQENDDVVTNFLEDHPN-FELIPTETTYKLKLD 421

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  E  + + PD            DGFF   LR+
Sbjct: 422 HG-----EKALHVYPDDY--------HTDGFFVATLRK 446


>gi|227431998|ref|ZP_03914018.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352283|gb|EEJ42489.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 448

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 195/458 (42%), Gaps = 44/458 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R+++   L+ + +        L+          L + D  L+  +V   ++     + 
Sbjct: 10  NPRVLAVQTLAKI-KNGAYSNLQLNQVIKQHK---LGEADTRLLTTLVYGVIQHRLTFEY 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L+  + S   +    +++LL  ++ Q+ YLD +  +A+ + ++E AK    +    K V
Sbjct: 66  WLEPFVGS--KKIDPWVRELLYTAIFQMEYLDKIPQHAIFNESIEVAK-ILGHVGTGKFV 122

Query: 125 NSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +IL  +SR       +  + +QR++  + +P W  E L    G ER   I         
Sbjct: 123 TAILHNISRKGLRSVADIGDDIQRLSIEASLPVWLVEELIKQNGDERARQIIATINDAPK 182

Query: 178 IDLTVKFDIET--------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V   + T         +                     + S   + +G   +QD S
Sbjct: 183 QSIRVNTLLATDQAVVTALESENFTITASSVAAHAFLVSGGHVASSKAYHDGWLTLQDES 242

Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285
           A +PV+       +  + D  AAPGGKT QL       A +TALDV + +++ +  N +R
Sbjct: 243 AMLPVESLHLTPEVKSILDAAAAPGGKTTQLAQYSAPDAVITALDVHEHKIKLINNNAER 302

Query: 286 LHL-YAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           LH+        +DA        K FD +LVDAPCS  G +RR P++ + +  +D+   A 
Sbjct: 303 LHVADKIHARVLDARKVPEQIDKKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVESLAR 362

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      +   GI+V+S C++ +Q++++VV K L   P   EL+P  + Y   +D
Sbjct: 363 LQTQILDSVSQNLAKNGIMVYSTCTILRQENDDVVTKFLEDHPN-FELIPTETTYKLKLD 421

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  E  + + P+            DGFF   LR+
Sbjct: 422 HG-----EKALHVYPNDY--------HTDGFFVATLRK 446


>gi|28378317|ref|NP_785209.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1]
 gi|28271152|emb|CAD64057.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1]
          Length = 447

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 185/467 (39%), Gaps = 46/467 (9%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M + G   R ++   L+ + +        L+    D     + +RD  L+  +V   ++ 
Sbjct: 1   MSTVGNTPRWLAVAALAKI-KNGAYSNLQLNQLINDHQ---MDRRDINLLTNMVYGVIQH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              ++  L   +     +    +++LL  ++ Q  YLD +   AV +  +E AK  K + 
Sbjct: 57  RLTLEYWLTPFVRHP-HQIDPWVRELLLSALYQWQYLDKIPQRAVFNETIEIAK-VKGHP 114

Query: 119 HFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
              + V  +L ++ R             +R++    +P W  + L    G E++  I  +
Sbjct: 115 GIRRFVTGVLHQMDRSGLPSFDAIKNPDERLSVTYSMPIWLIQELRRQLGAEKMERILSS 174

Query: 172 CISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
              P    L V   + T            L         + L       ++      G++
Sbjct: 175 LNQPAKQALRVNPALSTVEDVTTALINDGLTITPSEISPLGLIATDGQAINTEAMRYGMF 234

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEK 278
            VQD SA + V       N  VLD CAAPGGKT Q         G  V ALD+   +++ 
Sbjct: 235 TVQDESAQLVVPALNPQPNDRVLDACAAPGGKTTQIAASLDAEQGGTVVALDIHANKVKL 294

Query: 279 LRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           +  N  R+H+     A ++           + FD +LVDAPCS  G +RR P++ + +  
Sbjct: 295 IGQNAARMHVADRVEATELDARKVETQFNAESFDRILVDAPCSGLGLMRRKPEIRYEKQL 354

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D +     Q  +L      +K GGI+ +S C++ +Q++++V+ K L   P   EL    
Sbjct: 355 QDSLNLQRIQLAILTAVAPTLKKGGIMTYSTCTILQQENQDVITKFLADHP-DFELQTTP 413

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      D       E  + I PD            DGFF   LR+ 
Sbjct: 414 TERDLKTDRT-----EKTLSIYPDDYLS--------DGFFIACLRKK 447


>gi|193078768|gb|ABO13846.2| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii ATCC 17978]
          Length = 434

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETEDFEQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +            + E    I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +       P   E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIA 434


>gi|317495215|ref|ZP_07953585.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum
           M424]
 gi|316914637|gb|EFV36113.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum
           M424]
          Length = 441

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 104/459 (22%), Positives = 196/459 (42%), Gaps = 39/459 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S +N R +S  +L  + ++       L+  +       L ++D+  +  +V  T++    
Sbjct: 2   SNINTRKISYEILCDIFQEDAYSNITLNKYFNKYK---LEEQDKRFISEVVYGTIKNKMY 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ++ +L         R K  ++ ++ +++ Q+LY+D    +A++D AV+ +K+   N    
Sbjct: 59  LEHILKNYSKG---RVKPKVKIIIIMAIYQLLYMDKTPSFAIIDEAVKLSKKILGN-ITG 114

Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
             VN ILR + R             ++    +  PE     L+  YGKE+  +I  +  S
Sbjct: 115 NFVNGILRNIERNLNDLALKYKNKEEKFYIENSCPEELYSILKRQYGKEKAQSIVKSFNS 174

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESI-VSLPGFAEGVWWVQDASA 230
                +         E+   KL +  L +       L   + ++   F EG + VQD ++
Sbjct: 175 KSKNSIRYNPLKISKESLVEKLGSNALSSDICEDSLLLNKLDINNKYFKEGYYIVQDEAS 234

Query: 231 SIPVQLF--GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           S+             ++LD CAAPGGK+  +      + + + D    +L+ ++ N+ +L
Sbjct: 235 SLVACAIGENVSTKYNILDTCAAPGGKSLHIASKYFNSSLISCDKYIHKLKLIQENIKKL 294

Query: 287 HLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +      E D    +      FD V+ D PCS  G I+  P++ +      I   A  Q
Sbjct: 295 EIDNIKTYEQDATKCNIDFLNNFDIVICDVPCSGIGVIKNKPEIKYKITDKYIESIAALQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            K++     +VK GG++V+S C++DK+++ E +++ L  +     L  +     K     
Sbjct: 355 YKIIENSKGYVKVGGVLVYSTCTIDKRENIENIERFLNENK-DFRLEKITLNNSKV---- 409

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +   G I I PD  E         DGFF   LR++ +
Sbjct: 410 -KVQDNGTIEILPDDYE--------CDGFFIAKLRKMEE 439


>gi|152985582|ref|YP_001345414.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
           aeruginosa PA7]
 gi|150960740|gb|ABR82765.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
           aeruginosa PA7]
          Length = 434

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/455 (26%), Positives = 201/455 (44%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +   L+ V+  R SL+  L  +        ++ RD+ L + +     R+ PR+ 
Sbjct: 1   MNPRLAACQALAAVLAGRASLSGALPAQL-----DKVAPRDRGLTQELAFGAARWQPRLQ 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL + + Q+LY  V  +A +   V  A + K+      ++
Sbjct: 56  ALAARLLQKPFKAADNDIHALLLIGLYQLLYTRVPPHAAIGETVGCADKLKKG-WAKGVL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      E+ +  +     P W  + L+  +  E++ A+  A  +   + L
Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALQQAWP-EQLEALCAANNAHPPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            V     + +T+  +L    +                P  +  LPGFAEG   VQD +A 
Sbjct: 174 RVNRRHGERDTYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +  +L  +     VLD C APGGKT  L+    +   V A+D+ + RL ++R NL RL L
Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLEIQPELGEVVAVDLEQSRLLRVRENLQRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A           ++   + F  +L+DAPCS+TG IRRHPD+   R  DDI   A  Q +
Sbjct: 294 EARLVAADARATGEWWDGQPFQRILLDAPCSATGVIRRHPDIKLARKPDDIAALAQLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG++V++ CS+   ++ + +   L  +P   EL          +     
Sbjct: 354 LLDALWPTLEVGGVLVYATCSVMPSENSDGIAAFLARTPGAREL---------DLPGPWG 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      ++ P +         G DGF+   L ++
Sbjct: 405 MKQAHGRQLLPQV--------DGHDGFYYAKLIKI 431


>gi|300767253|ref|ZP_07077165.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180467|ref|YP_003924595.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|300495072|gb|EFK30228.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045958|gb|ADN98501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 447

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 186/467 (39%), Gaps = 46/467 (9%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M + G   R ++   L+ + +        L+    D     + +RD  L+  +V   ++ 
Sbjct: 1   MSTVGNTPRWLAVAALAKI-KNGAYSNLQLNQLINDHQ---MDRRDINLLTNMVYGVIQH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              ++  L   +     +    +++LL  ++ Q  YLD +   AV +  +E AK  K + 
Sbjct: 57  RLTLEYWLTPFVRHP-HQIDPWVRELLLSALYQWQYLDKIPQRAVFNETIEIAK-VKGHP 114

Query: 119 HFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
              + V  +L ++ R          +  +R++    +P W  + L    G E++  I  +
Sbjct: 115 GIRRFVTGVLHQMDRSGLPSFDAIKDPDERLSVTYSMPIWLIQELRRQLGAEKMERILSS 174

Query: 172 CISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
              P    L V   + T            L         + L       ++      G++
Sbjct: 175 LNQPAKQALRVNPALSTVEDVTTALINDGLTITPSEISPLGLIATDGQAINTEAMRYGMF 234

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEK 278
            VQD SA + V       N  VLD CAAPGGKT Q         G  V ALD+   +++ 
Sbjct: 235 TVQDESAQLVVPALNPQPNDRVLDACAAPGGKTTQIAASLDAEQGGTVVALDIHANKVKL 294

Query: 279 LRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           +  N  R+H+     A ++           + FD +LVDAPCS  G +RR P++ + +  
Sbjct: 295 IGQNAARMHVADRVEATELDARKVETQFNAESFDRILVDAPCSGLGLMRRKPEIRYEKQL 354

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D +     Q  +L      +K GGI+ +S C++ +Q++++V+ K L   P   EL    
Sbjct: 355 QDSLNLQRIQLAILTAVAPTLKKGGIMTYSTCTILQQENQDVITKFLADHP-DFELQTTP 413

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      D       E  + I PD            DGFF   LR+ 
Sbjct: 414 TERDLKTDRT-----EKTLSIYPDDYLS--------DGFFIACLRKK 447


>gi|225874679|ref|YP_002756138.1| putative ribosomal RNA small subunit methyltransferase B
           [Acidobacterium capsulatum ATCC 51196]
 gi|225792848|gb|ACO32938.1| putative ribosomal RNA small subunit methyltransferase B
           [Acidobacterium capsulatum ATCC 51196]
          Length = 440

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/442 (25%), Positives = 183/442 (41%), Gaps = 12/442 (2%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  LL  +         LL           L+ +D+ LV  +V  TLR+ P +D 
Sbjct: 4   PARRVAFDLLQRMATSDAHSDELLRTM----KVNALAAQDRNLVTTLVLGTLRWQPALDQ 59

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L   L     R    ++  LR+   Q+L+LD V  +AV++ +VE  K      +   LV
Sbjct: 60  ILLQFLTRPDQRLSEPVRAALRLGAFQLLHLDRVPPHAVLNDSVELVK-LSNEAYATGLV 118

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           N++LR+V           A         + R        + +   D   SP+ + +    
Sbjct: 119 NAVLRKVMHMPRGAGMDAAAAHPAWLAARWRRHFGAEAAQAICEYDQQASPVALRVQSAN 178

Query: 185 DIETW-AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN- 242
             E      +            + L   +     FAEG   VQD  + +  +L       
Sbjct: 179 PAEELTGEGVECAPGEWLNDACRVLRGDVARTQAFAEGRVRVQDEGSQLVAELAAAAMPE 238

Query: 243 -LSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
              VLD CAAPGGKTA L      A++ AL++S+RR  +      + +    + +  DA 
Sbjct: 239 AKRVLDACAAPGGKTAVLAERLAEARIVALEISERR-REQMKRNLKAYEGRVECVAGDAS 297

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               +  +D +L DAPCS TGT+ R+P++      +D+ +    Q  +L      +KPGG
Sbjct: 298 ALPAEPEYDLILCDAPCSGTGTMARNPEIRLRVYPEDLTRQQARQVAILRGVAGALKPGG 357

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            VV++ CSL+ +++E+VV+ V     + V  +        +  +      E  +    + 
Sbjct: 358 RVVYATCSLEPEENEDVVRAVAARVGLRVVEMTPLVEQLAARGVLTERGRENVLAAITND 417

Query: 420 LEKIDGVSSGMDGFFAVALRRL 441
             +        DGFFA  L R+
Sbjct: 418 QLRTLPGVHPCDGFFAAVLERV 439


>gi|116072280|ref|ZP_01469547.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107]
 gi|116064802|gb|EAU70561.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107]
          Length = 445

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 114/466 (24%), Positives = 187/466 (40%), Gaps = 60/466 (12%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R ++  +L  V          L+    D   +     D+ L   +    +R    +
Sbjct: 8   GIAPRQLAWKVLQAV-AAGAYADVALERCLRDHPLQG---PDRGLATELAYGAIRQRRIL 63

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
           D  LD +      ++   L+ LL V + Q+L +  +   A V+  VE AK        A 
Sbjct: 64  DGWLDRMGKVPAAKQPPKLRWLLHVGLYQLLMMERIPSAAAVNTTVELAK-VSGLARLAP 122

Query: 123 LVNSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +VN +LR V R            +   ++A  + +P+W    L  + G E   A++ AC 
Sbjct: 123 VVNGLLRGVLRAHESGETLELSADPAIQLAQQASLPDWLAASLIQWRGPEGAAAVAAACN 182

Query: 174 SPLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
               +DL V            D+     +   +     G+++      +   PG+AEG W
Sbjct: 183 HVPDLDLRVNRLRSTPEQVGRDLAEVGIETCPIAGCANGLQVLGHSGDLRHWPGYAEGYW 242

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            VQD +A     L        VLD CAAPGGK   L   +    ++ A+D S  RL+++ 
Sbjct: 243 CVQDRAAQWVAPLLDPNPGDRVLDACAAPGGKATHLAELMGDVGEIWAVDRSAGRLKRVA 302

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            N  RL L +   +  DA     ++      F ++L+DAPCS  GT+ RHPD  W     
Sbjct: 303 VNAARLGLGSIQALAADAALLSKERPEWREAFQSILIDAPCSGLGTLARHPDARWRMTPK 362

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I      Q+ LL   +  + PGG +V++ C++   ++ E +  +L+             
Sbjct: 363 AIQDLLPQQQALLDGLVPLLAPGGRLVYATCTMHPAENGEQMANLLKRCSE--------- 413

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      L+ E   +  PD          G DGF+A  L+R+
Sbjct: 414 -----------LTLEREQQRWPD-------AEEGGDGFYAAVLQRV 441


>gi|238063929|ref|ZP_04608638.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149]
 gi|237885740|gb|EEP74568.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149]
          Length = 507

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 98/462 (21%), Positives = 165/462 (35%), Gaps = 44/462 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  +++ V R       +L +         L+ RD      +   TLR L  +DA+
Sbjct: 61  PRHVAYQVVAAVHRDDAYANLVLPVLLR---QEGLTGRDAAFATELTYGTLRHLGTLDAI 117

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L       + R    ++  LR+   Q+L+  V  +A V   V+  +            N+
Sbjct: 118 LTDAAGRDVARIDPPVRDALRLGAYQLLHTRVPAHAAVSSTVDLVRTV--GIGATGFANA 175

Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDA 171
           +LR V+    +                 ++     P+W         G +      +   
Sbjct: 176 VLREVAGRDADAWVAKLAPAYESDPIGHLSLAYSHPQWIVRSFAEALGGDLGETTRLLIE 235

Query: 172 CISPLYIDLTVKFDIET---WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                 + L  +  +      A ++           +     +   LP  AEG   VQD 
Sbjct: 236 NNERPPVHLCARPGLADPVVLADEVGGAPGAFSPYAVYLAGGAPGDLPALAEGRAHVQDE 295

Query: 229 SASIPVQLFGTL----NNLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLR 280
            + +             +   LDLCA PGGK     A     GA++TA++VS+ R   + 
Sbjct: 296 GSQLVANALAVAPLDGPDAHWLDLCAGPGGKAGLLGALAAQRGARLTAVEVSEHRARLVG 355

Query: 281 CNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
                L +         + A    P+  FD VLVDAPC+  G +RR P+  W +   D+ 
Sbjct: 356 QATRGLPVTVLHTDGRTVGADAELPEGHFDRVLVDAPCTGLGALRRRPEARWRKQPSDLP 415

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                QR+LL   +   +PGG+V +  CS    ++   V +  R + +P + V       
Sbjct: 416 PLTRLQRELLSAALRAARPGGLVAYVTCSPHTVETHVTVTEAARRAGVPADFVDARPLLP 475

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +     L     +++ P           G D  F   LRR
Sbjct: 476 AGMP---GLGDGPSVQLWPH--------RHGTDAMFLAVLRR 506


>gi|169794225|ref|YP_001712018.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii AYE]
 gi|215481783|ref|YP_002323965.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB307-0294]
 gi|301510400|ref|ZP_07235637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB058]
 gi|332850303|ref|ZP_08432637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6013150]
 gi|332871589|ref|ZP_08440083.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6013113]
 gi|169147152|emb|CAM85011.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii AYE]
 gi|213987633|gb|ACJ57932.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB307-0294]
 gi|332730761|gb|EGJ62071.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6013150]
 gi|332731443|gb|EGJ62735.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6013113]
          Length = 434

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +            + E    I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +       P   E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434


>gi|149186386|ref|ZP_01864699.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21]
 gi|148829975|gb|EDL48413.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21]
          Length = 414

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 149/437 (34%), Positives = 216/437 (49%), Gaps = 36/437 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G++AR  +  LL  V R+  +L    +    D         D+ L RAI +  LR+L  
Sbjct: 7   PGIHARRAALRLLDAVFRRGETLDIAFNAATKDVRKFE----DKALARAITSEVLRWLVD 62

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +D  +D     +LP      + +LR+ +AQ L LD   +AV+   +            A 
Sbjct: 63  LDRGIDSATKKALPD-DSKARMVLRMMLAQWLRLDTPPHAVIATCLPL---------LAG 112

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
               +   V     +    +     +PE   +R       ER  AI+     P  +DLT+
Sbjct: 113 GPRRLAHGVFSTLTKREIALPESPTLPEDVAQRWG-----ERAEAIARGLAEPPPLDLTL 167

Query: 183 --KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                 E W  +L A  L  G +RL    E++  LPGFAEG WWVQD +AS+PV+L G  
Sbjct: 168 KDPDQTEIWKTRLAADSLTPGHLRLPRG-ENVEKLPGFAEGEWWVQDLAASLPVRLLGAG 226

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLCAAPGGKT QL   G +VT+LD+SKRRL+ L+ NL R  L A  +   DA  
Sbjct: 227 EGRHVLDLCAAPGGKTLQLAAQGWQVTSLDISKRRLDLLKVNLKRTGLKASAVR-ADALA 285

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + PK  FDA+L+DAPC++TGT RRHPDV+       I + A  Q  LL +   ++KPGG+
Sbjct: 286 WEPKHQFDAILLDAPCTATGTARRHPDVIHRIGQRQIEEMAELQASLLARAAGWLKPGGV 345

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CSL++++ E          P  + + P+           +  S +G +R  P ML
Sbjct: 346 LVYATCSLEREEGEGQ------ELPSSLGIAPIAQDDLPD---GINPSDDGTLRTDPGML 396

Query: 421 EKIDGVSSGMDGFFAVA 437
            +    + G+DGFF V 
Sbjct: 397 LE----NGGIDGFFIVR 409


>gi|222099955|ref|YP_002534523.1| Sun protein [Thermotoga neapolitana DSM 4359]
 gi|221572345|gb|ACM23157.1| Sun protein [Thermotoga neapolitana DSM 4359]
          Length = 431

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 124/453 (27%), Positives = 207/453 (45%), Gaps = 41/453 (9%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N RL++  LL    +++      LD E  DS   +L+ RD+  ++ +V   +R    +
Sbjct: 2   RTNVRLLAYRLLRKYEKEK-----FLDREDVDSVLSVLNDRDRRFLKELVWGVMRKEELL 56

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  ++ +L +       +++  LR+ V Q+L++D V DYA V   V+  K    N +F K
Sbjct: 57  DWYINQLLRNP--DIPPAVRVALRMGVYQLLFMDGVPDYAAVSETVKLVK----NENFKK 110

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN++LRRV          +  +   P+W  +   +F  +E VL I +    PL   L V
Sbjct: 111 LVNAVLRRVKSVPPPSDLHL--VYSHPKWLVDYWRSFLPEEVVLRIMEWYQKPLPTVLRV 168

Query: 183 K---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                  E     L+               + +K+L   +       EG+  VQ  S+ I
Sbjct: 169 NSLVTTREEVIEILSKEGTEAIYGKHSPFSVVIKKLGVPLNDSKVITEGLATVQGESSQI 228

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              L     N+ VLD C+APGGKT  +   +    ++ A DVS  RL+ +  ++ RL L 
Sbjct: 229 VPLLMDLEPNMKVLDTCSAPGGKTTFIAELMKDKGEILATDVSMERLQLVEKHVRRLKLS 288

Query: 290 AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           +  I   DA          FD +LVDAPCSS GT R HP+VL     ++  + +  Q ++
Sbjct: 289 SVKIKLADAERLTEFIQDEFDRILVDAPCSSLGTARNHPEVLRRAKKEEFKELSEKQFRI 348

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L Q    +K GGI+++S C++ K+++ EV++     +P  VE++ L     +   +    
Sbjct: 349 LSQSWKLLKKGGILLYSTCTITKEENTEVIKAFAEQTP-DVEVIDLRKRL-EDYGVEGLW 406

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              G++ + PD              F+  AL++
Sbjct: 407 DGFGFL-MLPDETLTP---------FYVSALKK 429


>gi|91774540|ref|YP_544296.1| sun protein [Methylobacillus flagellatus KT]
 gi|91708527|gb|ABE48455.1| sun protein [Methylobacillus flagellatus KT]
          Length = 425

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 105/446 (23%), Positives = 195/446 (43%), Gaps = 39/446 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++  +  V+    +L+ +L+  +     R ++ + +   + +   TLRF  R++A+L 
Sbjct: 6   QLAAQAVGQVLD-GRNLSVVLETLFQH--QRDITPQQRAASQDLTYGTLRFYARLEALLQ 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +L   L      +  LL VS+ Q++Y     + VV+ AV  A + ++      LVN++L
Sbjct: 63  QLLQKPLS--DAFIHHLLLVSLYQLVYDRAGAHTVVNQAVLAAAKTRKT-WAKGLVNAVL 119

Query: 129 RRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLTVK 183
           R   R++  L +RIA         P+W+  +L   Y       +       P+ + +  +
Sbjct: 120 RNFLRQRAMLERRIADDEVAQYSYPQWWINKLRQQYPVHWQSMLEAGNQHPPMTLRVNRR 179

Query: 184 FD-IETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            D   ++  +L A  L          + E    +  LPGF  G   VQD  A        
Sbjct: 180 HDDAASYLERLRAAGLNARTLDEQAVMLESAVPVTRLPGFEAGHASVQDWGAQFAAMELD 239

Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295
             + + VLD C APGGKT  ++  +  ++TA+D    RL +++ NL+RL L A       
Sbjct: 240 VADGMRVLDACCAPGGKTGHVLELADVRMTAMDNDAHRLLRVQQNLERLGLSASLVQGDA 299

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            +   +     +D +L D PCS++G +RRH D+ W R   DI   A  QR +L      +
Sbjct: 300 ANPDAWWDGMPYDRILADVPCSASGIVRRHVDIKWLRREQDIAAFAEQQRLILQGLWRLL 359

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
             GG +++  CS+  +++++ + + L++ P             + +            ++
Sbjct: 360 AKGGKLLYVTCSVFHEENQQQIARFLQTQPDA-----------RQMPCKHGTLQSNQGQL 408

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P          +  DGFF   L+++
Sbjct: 409 LPG---------TEHDGFFYALLQKV 425


>gi|58337594|ref|YP_194179.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|58254911|gb|AAV43148.1| rRNA methylase [Lactobacillus acidophilus NCFM]
          Length = 455

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 110/461 (23%), Positives = 200/461 (43%), Gaps = 45/461 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +  +AR +S   L  V+         L+    +S    L+  DQ L   IV  T+++  
Sbjct: 14  STSKSARAISLETLIKVLGNGSYSNISLNNSLKNS---DLAIADQNLATRIVYGTIQYRI 70

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L+ ++ + L  K   ++ LL +S+ QI++LD V + A++D A + AK+  ++   
Sbjct: 71  FLEYQLNGLIKTKLTEK--YIKPLLLMSLYQIIFLDKVPNRAILDEANKLAKKFGKHHSS 128

Query: 121 AKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
              + + + R          +K   ++ ++    +PEW  + L + +G E+  ++  +  
Sbjct: 129 GYRIVNGILRSFIRRGVILPDKNNEIEYLSIKESVPEWLVKYLISNWGIEKTKSVLSSIN 188

Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQ 226
            P    + +++  D +    +L+          L           +     F  G   +Q
Sbjct: 189 EPAKNSVRISMFSDKKKVFEELDNEGFNPNWSNLSANDIVLDHGGVSQSNLFKSGNLTIQ 248

Query: 227 DASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCN 282
           D +AS  +    F       VLD C+APGGKT Q         VTALD+ +++L  ++ N
Sbjct: 249 DEAASLVVEAFDFDKDKPEHVLDACSAPGGKTVQLAESFKNGTVTALDIHEKKLRLVKEN 308

Query: 283 LDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             R+H+         DA +         F  +LVDAPCS  G +RR P++ +T+   D+ 
Sbjct: 309 AKRMHVSDKVKTQACDAREAQARFDAGEFTKILVDAPCSGLGLLRRKPEIRYTKSLKDLK 368

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q  +L      +   G +V+S CS+  +++E+VV+K L++     EL P   +  
Sbjct: 369 NLQKIQLAILDSVSLLLHVNGELVYSTCSISMEENEDVVKKFLQTHSN-FELKPFKLSKL 427

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +        S  G ++I PD          G DGFF    +
Sbjct: 428 E--------SKTGMLKIMPD--------QDGNDGFFIAKFK 452


>gi|118469121|ref|YP_887381.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170408|gb|ABK71304.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium
           smegmatis str. MC2 155]
          Length = 464

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 110/479 (22%), Positives = 177/479 (36%), Gaps = 61/479 (12%)

Query: 1   MKSGM-------------NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
           MK                 AR V+  +L  V  +       L     +   R +  RD  
Sbjct: 1   MKPNHPPRKRPPRRKPLDPARRVAFDVLRAVSERDAYANLALPAMLRE---RGIDGRDAA 57

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
               +     R L  +DAV++        R    L  LLR+   Q+L   V  +A V   
Sbjct: 58  FATELTYGACRSLGLLDAVIERAAGRPTDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTT 117

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKE 154
           VEQA   + +   A  VN +LR +S    +                  A +   P W  +
Sbjct: 118 VEQAG-IEFDSARAGFVNGVLRTISGRDEQAWIAELAPSAETDPVGHTAFVHAHPRWIAQ 176

Query: 155 RLENFYGKE--RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELP 209
              +  G     + A+  +  +   + L  +      E  A +    +       +    
Sbjct: 177 AFTDALGAAAGELDALLASDDARPVVHLAARPTAITAEELAEQAGGTVGRYSPYAVYLTG 236

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKT----AQLI 260
                +P   +G   VQD  + +  +               LDLC+ PGGKT    +   
Sbjct: 237 GDPGRVPAVRDGAAQVQDEGSQLVARALTLAEVDGTDEGRWLDLCSGPGGKTALLASIGA 296

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320
            SGA+VTA++ ++RR + +  N   L     ++  +D  +   +  FD VLVDAPC+  G
Sbjct: 297 ASGARVTAVEPAERRADLVEENTRGLG---VEVHRVDGRESGLQPGFDRVLVDAPCTGLG 353

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            +RR P+  W R   D+      QR+LL   I   +PGG+V+++ CS    ++  VV   
Sbjct: 354 ALRRRPESRWRRQPGDVAALTRLQRELLAAAIRLTRPGGVVLYATCSPHLAETVGVVADA 413

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +R  P  V  +     +    D+         +++ P           G D  FA ALR
Sbjct: 414 IRRHP--VTAMDTRPLFAPVDDLGAGPH----VQLWPH--------RHGTDAMFAAALR 458


>gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
           viridans ATCC 11563]
 gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
           viridans ATCC 11563]
          Length = 482

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/473 (22%), Positives = 203/473 (42%), Gaps = 53/473 (11%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            ++AR  +   ++ ++R    +   ++    + A   +++ D+ L   +V  +++    +
Sbjct: 26  KLSARFQAMESVNQIIRHNHFINQEVNRVLTEEA---VAEADRNLYTNLVYGSVQNYYTL 82

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           DA +   +     + K  +  LL VS  Q+ YLD + +YAVVD AV   ++ + N+  AK
Sbjct: 83  DAFVRDFVAKP-NKVKSWVWSLLIVSAYQMYYLDNIPNYAVVDEAVRIVRK-RGNQTLAK 140

Query: 123 LVNSILRRVSREKIELLQRIAG----------ISIIPEWFKERLENFYGKERVLAISDAC 172
             N +LR  +R    +   I             + +P  + +   + +G +    ++++ 
Sbjct: 141 FANGVLRNFTRRYETMADFIQTKEDPREKLTLEASLPPVWVDYFVDRFGLDEAEKLANSL 200

Query: 173 ISPLYIDLTVKFDIE--------TWAHKLNAVML-----PTGGIRLKELPESIVSLPGFA 219
               +I +                +   L A        P     L+    +      F 
Sbjct: 201 NQTPFITVRANNKFNNLDNDKMTEYQEILEAEGFSVAPSPLSPFALRVTKGNPAHSSLFM 260

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRL 276
            G   +QD SA + V+        +VLD CAAPGGKT Q+         V A D+++ +L
Sbjct: 261 NGEITIQDESALLAVEALNPKPGETVLDACAAPGGKTVQIAEAVGRTGHVIACDIAENKL 320

Query: 277 EKLRCNLDRLHL-YAEDIIEMDAF--------DYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
             ++ N+DR+ +    +I+  DA         +      FD +LVDAPCS  G  RR PD
Sbjct: 321 PLIQENVDRMQVADHVEILHQDATALLDRFGENGSEPTSFDKILVDAPCSGVGLFRRKPD 380

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
             + +   D+      Q  ++ Q +  +K GG++ +S C++ ++++E+VV+ +L   P  
Sbjct: 381 TKYHKTLQDLDALHDIQVTIMNQALPLLKKGGVITYSTCTITREENEDVVKAILDQHPD- 439

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             L   +  +W+  ++  ++  +G I I P             DGFF  +  +
Sbjct: 440 --LTLKSFKHWRD-NLDQSIGADGTIEILPHTYMS--------DGFFIASFEK 481


>gi|239502749|ref|ZP_04662059.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB900]
          Length = 434

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ + T          + E    I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQTRACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWTPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +           E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMTNFFTEHTDAKEVK---------IETDWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QAYGRQLLPEAQSG--------DGFYYCKIQKIA 434


>gi|330500985|ref|YP_004377854.1| sun protein [Pseudomonas mendocina NK-01]
 gi|328915271|gb|AEB56102.1| sun protein [Pseudomonas mendocina NK-01]
          Length = 437

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 186/443 (41%), Gaps = 42/443 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  + SL   L           +   D+ L + +     R+ PR+  + D +L      
Sbjct: 14  VLSGKASLGSSLP-----PQLDKVEHHDRALAQDLAFGAARWQPRLQLLADKLLEKPFKA 68

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               ++ LL + + Q+L+  + ++A +   V  A   K+      L+N++LRR  RE   
Sbjct: 69  ADKDVEALLVIGLYQLLHSRIPEHAAIGETVGCAGALKKP-WAKGLLNAVLRRAQREHEA 127

Query: 138 LLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190
           L   +    +     P W ++ L+  +  E   AI  A  +   + L V       + + 
Sbjct: 128 LFAELDRDPVLHTAHPRWLQKTLKAHWP-EHWQAICAANNAHPPLILRVNRRHGSRDAYL 186

Query: 191 HKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            +L                     P  + +LPGF EG   VQD +A +   L        
Sbjct: 187 EELRNAGFAAEPCTFSRDGVRLLQPCDVTALPGFKEGRVSVQDEAAQLAADLLELTPGQR 246

Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299
           VLD CAAPGGKT  L+       +V A+D+  +RL ++R NL+RL L A  I     D  
Sbjct: 247 VLDACAAPGGKTCHLLEVEPGLSQVVAVDLEAKRLARVRENLERLQLEATLIAADGRDTA 306

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   + F  +L+DAPCS+TG IRRHPD+  TR  +DI   A  Q +LL      +  GG
Sbjct: 307 AWWDGQPFQRILLDAPCSATGVIRRHPDIKLTRKPEDIPALAQLQGELLDALWPTLAQGG 366

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           I++++ CS+   ++ E +   L  +    E                 ++ EG   + P  
Sbjct: 367 ILLYATCSVLPTENSETIAAFLARTVDARE-----------------IAIEGDFGLQPAH 409

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
             ++     G DGF+   L +  
Sbjct: 410 GRQLLPQLDGHDGFYYAKLIKTA 432


>gi|296140265|ref|YP_003647508.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162]
 gi|296028399|gb|ADG79169.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 452

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/465 (20%), Positives = 161/465 (34%), Gaps = 45/465 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L+ V  +      +L      +    L+ RD      +     R    +DA
Sbjct: 4   PARRAALETLAAVRERGAYANLVLPGLLRQAR---LTGRDAAFATELTYGACRAQGLLDA 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V++     S+      +   LR+ V Q+L   V  +A VD  VE  K     R      N
Sbjct: 61  VIEDASGRSVDEIDGPVLDALRLGVYQLLRTRVGAHAAVDETVEAVKASSG-RGAGGFAN 119

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           ++LR+VS+   +                 +A     P W  +          + ++    
Sbjct: 120 AVLRKVSKADEDAWVAKLAPSAADDLVGHLAMQYAHPRWIADAFWESLRANGIRSMGQLQ 179

Query: 173 I------SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
                  +   + L  +      +  A  +           +        +L    +G+ 
Sbjct: 180 ALLAEDDARPPVHLVARPGEISADELALIVGGETGRLSPYAVYLPGGDPGALEPVRDGLA 239

Query: 224 WVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLE 277
            VQD  + +  +               LDLCA PGGK A L    +   A +D  +    
Sbjct: 240 GVQDEGSQLIARALTIAPVEGEDGGRWLDLCAGPGGKAALLGSLASIEGARVDAVEPAEH 299

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           +             ++   D      +  +D VLVDAPCS  G +RR P+  W +   DI
Sbjct: 300 RAELVRTITKGLPVEVHVTDGRSSGLEPGYDRVLVDAPCSGLGALRRRPEARWRKQPADI 359

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN-SA 396
                 QR+LL       +PGG+V+++ CS    ++  VV    +       L P++   
Sbjct: 360 ADLTVLQRELLTAAAGLTRPGGVVLYATCSPHVAETIGVVAD--QRLLTDAGLEPIDTRP 417

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              + D+ +   P   +++ P +         G D  F  A R+L
Sbjct: 418 LVPATDLPLGDGPH--VQLWPHL--------HGTDAMFFQAFRKL 452


>gi|312793229|ref|YP_004026152.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180369|gb|ADQ40539.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 410

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 185/438 (42%), Gaps = 58/438 (13%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88
           +D        +L +++D+ L   +V+  LR+   ID  ++FV    +      +  +LRV
Sbjct: 1   MDSLMEKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVK--DRRILNILRV 58

Query: 89  SVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE---------- 137
           +  ++L+L+ + +YA V+ A E A +   + H    VN+ILR + R K +          
Sbjct: 59  ATYELLFLEKIPEYATVNEACEIASKI--SPHLKAFVNAILRNIIRNKNQIEESLERIKD 116

Query: 138 --LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHK 192
                 ++     P +  + LE  YG E+ L I +   +     + +     D+ T   +
Sbjct: 117 VDYKSYVSIKLSYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKKTDVNTLTQE 176

Query: 193 LNAVMLPTGGI-----RLKELPESIVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSV 245
           L                +  L  +I     + EG ++ QD ++S+              V
Sbjct: 177 LEKNGFKYEINSHNNEIIHVLKGNIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKV 236

Query: 246 LDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           +DLCAAPGGK      V    V A D+++ +L+ LR N+ RL      + + DA  + P 
Sbjct: 237 IDLCAAPGGKTFNCAEVIDGFVVACDINEHKLDVLRENILRLGFDNIIVAKSDAEVFNPD 296

Query: 305 K--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD V+ D PC+  G IR+ PD+ W +   DI      Q ++L     ++K GG++ 
Sbjct: 297 FAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNAAGYLKKGGLLF 356

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C+L ++++EE V K L        LV                     I I PD  + 
Sbjct: 357 YSTCTLSRKENEETVLKFLDKH-RDFSLVSQ-------------------ITIFPDEFK- 395

Query: 423 IDGVSSGMDGFFAVALRR 440
                   DGFF   LR+
Sbjct: 396 -------CDGFFIAKLRK 406


>gi|260553856|ref|ZP_05826124.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260404976|gb|EEW98478.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 434

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETEDFQQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +      L +          I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACTLSDAGIILEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWTPAQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +           E+          I+    + 
Sbjct: 358 EHMWQQLKVGGSLLYITCSILKAENEQQMISFFAKHTDAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QAHGRQLLPEAQSG--------DGFYYCKIQKIA 434


>gi|319790535|ref|YP_004152168.1| sun protein [Thermovibrio ammonificans HB-1]
 gi|317115037|gb|ADU97527.1| sun protein [Thermovibrio ammonificans HB-1]
          Length = 445

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 110/463 (23%), Positives = 201/463 (43%), Gaps = 47/463 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +G   R ++  +L+   R +      L     ++    L+ +++  +R +VN T+RFL
Sbjct: 1   MLTGWKQREIAVKVLNAFERDKK-----LREHL-EALTAALTPQERAFLRELVNGTVRFL 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D  ++      L  +K +++  LR+   Q+ +  V  YA ++  VE  K+    +  
Sbjct: 55  RLLDFSVERASGRRLASQKPTVRNALRLLAYQLFFTGVPPYAALNETVEVVKQRLG-KGA 113

Query: 121 AKLVNSILRRVSREKIELL--------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           A  VN++ +++                +R+A +     W  +R E+FYG   +  + +  
Sbjct: 114 AGFVNAVGKKLLNFNYREEVESIKDPLERLATLHSFETWMVKRWESFYGPRELPHLLEGL 173

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVW 223
                + + V       +   + L +  +              +   ++  LPGF EG++
Sbjct: 174 NKVAPLFIRVNLIKTQPQELLNLLKSAGVEAEPHPFLKEMIRIKGRVNLPELPGFKEGLF 233

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
           ++QD ++ +   L        +LD+ AAPGGKT  +     +GAK+ A+DV++ R E L+
Sbjct: 234 YIQDPASYLAAYLLQPKPGELILDVGAAPGGKTTAIASLTGNGAKIVAVDVNRERAELLK 293

Query: 281 CNLDRLHLYAEDIIEMDAFDYC-----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            NL +L +   +++  D           +  FD +L+DAPCS+TG IRRHP+  W +   
Sbjct: 294 ENLRKLGVENTEVVITDIARDPNFLNRFRGKFDRILIDAPCSATGVIRRHPEGKWNKSLS 353

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I  +   QR LL      +KP G +++S CSL++++ EE      R       L     
Sbjct: 354 LIKHNQTIQRSLLKAAKELLKPTGTLLYSVCSLEREEGEEN-SAFARR------LGYTPL 406

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                 +       EG +R+ P             DGF+   L
Sbjct: 407 PLTGLPEYLKEREQEGSLRLFPH--------KDNADGFYYQKL 441


>gi|194367355|ref|YP_002029965.1| sun protein [Stenotrophomonas maltophilia R551-3]
 gi|194350159|gb|ACF53282.1| sun protein [Stenotrophomonas maltophilia R551-3]
          Length = 443

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 126/456 (27%), Positives = 195/456 (42%), Gaps = 40/456 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G   R++++ +L+ V  +  SL   L       A      RD+ L+ A+    LR   
Sbjct: 13  APGAATRMLAARVLAQVFTRGRSLKAELAWALPKLA----DSRDRALLEALCFAVLRRRS 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             DA L   +   L  +   L+ LL V  AQ+  L++  +A +   V+ A+     R  A
Sbjct: 69  TYDAALQGWMQKPLSARDADLRTLLMVGFAQLDVLELPAHAALSATVDAARALGRERQ-A 127

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN+ILRR  RE              PEW  + +E  +   +  AI  A + P  + L 
Sbjct: 128 GLVNAILRRAQREGFPEQPA---RDAFPEWLADAVERDWP-AQADAIFSASLQPAPLWLR 183

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
               +   +     L    +      L        +P ++  LPGFAEG   VQD SA  
Sbjct: 184 ANRQQGGRDKALAALAEAGIAAEASTLSADALRLAVPVAVNQLPGFAEGALSVQDLSAQC 243

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHL-- 288
                   +   VLD CAAPGGK+A L+      ++ ALD+  RRL + R    R  +  
Sbjct: 244 AADALAPASGARVLDACAAPGGKSAHLLERDPSLRLLALDIDARRLARARDTYIRTGVGE 303

Query: 289 --YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                     D   +     FDA+L+DAPCS+TG IRR PDV++ R  +DI      Q +
Sbjct: 304 HVQTLAADASDPGSWWDGVPFDAILLDAPCSATGVIRRQPDVMFHRRAEDIDALVGVQAR 363

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL    S ++PGG+++++ CS+ + ++ + V+  L+  P  V          + +  A  
Sbjct: 364 LLEACWSMLRPGGVLLYATCSILRAENIDQVRAFLKWHPDAV---------AQPLGDAFG 414

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +  EG  R       +     +  DGFF   L +  
Sbjct: 415 VDCEGVAR-------QRLPGENDADGFFYARLLKTA 443


>gi|237735904|ref|ZP_04566385.1| SUN protein [Mollicutes bacterium D7]
 gi|229381649|gb|EEO31740.1| SUN protein [Coprobacillus sp. D7]
          Length = 417

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 110/450 (24%), Positives = 188/450 (41%), Gaps = 52/450 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L     ++  L   L+     S    LS+ D+ L   IV  T++    ++  
Sbjct: 2   ARTTALDVLIKYQNEQSYLNITLNDYLEKSL---LSRNDKDLATRIVYGTIQNKLYLEYQ 58

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     + K   + +L +S+ Q+++LD V DYAV+D AV  AK+   +    K VN
Sbjct: 59  LAPYIQG--KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKK--RDNFAGKFVN 114

Query: 126 SILRRVSREKIELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +ILR   R     +       RI+  +  P W  + L   Y       I     +P    
Sbjct: 115 AILRNFLRNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRA 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
             V     T A  L       G      L     +I +   F  G+  +QD S+ +   L
Sbjct: 175 ARVNILKTTKAQLLTDENFEVGNLSPDGLLYRAGNIANTDYFKNGLVTIQDESSQLIAPL 234

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   VLD+C APG KT     ++ +  K+ A D+ + +++ +  NL RL +   ++
Sbjct: 235 LDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNNVEL 294

Query: 294 IEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
              DA     K     FD +L+DAPCS  G ++R P++ +  D+  +      Q KLL  
Sbjct: 295 HVGDATLLKEKYSEESFDKILLDAPCSGLGVMKRKPEIKYH-DSGAMDTIIPLQAKLLDN 353

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +K  G +V+S C+++K+++E+++++ L   P                   M +  E
Sbjct: 354 AYYLLKKNGKMVYSTCTINKKENEQMIKQFLDKYPD------------------MKIIEE 395

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +I P + +         DGF+   L +
Sbjct: 396 K--KILPYVYDS--------DGFYMCKLEK 415


>gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Candidatus
           Cloacamonas acidaminovorans]
          Length = 438

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 190/457 (41%), Gaps = 42/457 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  +   +  V++ +     LL               D  L   +V   ++   ++D
Sbjct: 1   MNFRSEAYTTILKVLKDKEYSDTLLHQRAKKLKNAG---EDPALFYNLVKGVIKLYLKLD 57

Query: 65  AVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
            +L   +           ++ LL + + Q+LYL+ + DYA V+  VE AK    N   A 
Sbjct: 58  YILQQYVDKKKYTDTDIKIKVLLYMGLYQLLYLNSIPDYAAVNETVELAKT-LFNPQVAD 116

Query: 123 LVNSILRRVSREKIELLQR-----IAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            VN++LR   R             IA     P    ++  + +G+E    ++        
Sbjct: 117 FVNAVLRNYLRNPEVSYPNEPALRIAYEHSFPPELIKQWLDLWGEENTEYLAMFFNENPE 176

Query: 178 IDLTVKFDIETWAHKLNA---------VMLPTGGIRLKELPES-IVSLPGFAEGVWWVQD 227
           + + V     T   KL A                +       + ++    F+EG + VQD
Sbjct: 177 LHIRVN-STATTPEKLKAYFAKRNIVITPSQASPMMFHTAQTAEVLEDVAFSEGYFSVQD 235

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
            SA++ V+L       SVLDL AAPGGK +     + +  +V A+D    +++ L+   +
Sbjct: 236 TSAALIVELLDPQKEESVLDLFAAPGGKCSYIAERMDNTGEVIAVDKIPSKMKLLKQAAN 295

Query: 285 RLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           RL L    ++  DAF Y P    F  VLVD PCS  G   R  D+ W     +I +    
Sbjct: 296 RLQLTNIKMVVTDAFKYGPVAPAFHRVLVDVPCSGWGVFGRKSDLRWQAHQ-NIPELIKL 354

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q K L    +FV PGG +V+S C+++ +++E+ +   L+ +    EL+P ++       +
Sbjct: 355 QEKALDYAANFVTPGGFLVYSTCTMNPKENEDQISAFLKKNRN-FELIPADAF------I 407

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +  G+++  P            MDG FA  L+R
Sbjct: 408 PERYTSAGYLKTIP--------FKHNMDGAFAAKLQR 436


>gi|308449899|ref|XP_003088114.1| hypothetical protein CRE_16572 [Caenorhabditis remanei]
 gi|308249515|gb|EFO93467.1| hypothetical protein CRE_16572 [Caenorhabditis remanei]
          Length = 435

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 199/455 (43%), Gaps = 41/455 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
              +N R      L  V +   SL  +L+         ++S+RD+ L   +    LR   
Sbjct: 8   AKNLNLRAQVVKTLLAV-QNGQSLASVLNQHI-----NIISERDRGLYHELTLGCLRQWY 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + A+   +L   L     +L+  L + + QIL   +  +A +   V  AK+       +
Sbjct: 62  SLKAITLPLLTKPLD--NEALESCLYLGLYQILCTRIPAHAAISETVNAAKQ-LGFEPMS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN+ILRRVSRE  E    +     +P W  +RL+  +  + +  I         + L 
Sbjct: 119 GLVNAILRRVSRETTEFQTALNNTHGLPSWLFKRLKKDWA-DLLPEICQNLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           V   +   + +   L+   +      L +         +I  LPGF EG + VQD  A +
Sbjct: 178 VNQRQISRDEYLDILDEEQIDARPCTLSDVGIVLEQTGNITHLPGFEEGGFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L   L++  ++D CAAPGGK A      +  K+ ALD   +RL ++  NL+RL L  
Sbjct: 238 CATLLPNLDDKVIIDACAAPGGKAAHILERFNPKKLIALDHDAKRLLRVSENLERLELNV 297

Query: 291 ---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
               +II  DA  + PK+L D +++DAPCS+ G +RRHPD+   R + DI +    Q+++
Sbjct: 298 DATVEIITADATTWVPKELVDCIVLDAPCSAIGVLRRHPDIRLLRQSTDIQQVVDLQKQI 357

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K GG +++  CS+ K ++E+ + +         E+          ID    +
Sbjct: 358 LKHMWQQLKVGGTLLYITCSILKVENEQQMVEFFAEHADAEEIK---------IDANWGI 408

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 ++ P         +   DGF+   +++  
Sbjct: 409 EQIHGRQLLP--------EAHHGDGFYYCRIQKTA 435


>gi|297622450|ref|YP_003703884.1| Fmu (Sun) domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297163630|gb|ADI13341.1| Fmu (Sun) domain protein [Truepera radiovictrix DSM 17093]
          Length = 421

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 179/439 (40%), Gaps = 32/439 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR  +  +L  V  +      +L           LS  D+  V  +V  +LR    +D
Sbjct: 1   MTARETALSILRRV-HRGAFAAPVLSDALARG---GLSAADRGFVTHLVYGSLRLELALD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A L  +L +   +    +   LR+   + LY      AVV+  V   KR       A LV
Sbjct: 57  AQLRPLLQNP-AKLPPGVLDALRLGAFEALYSGTPRRAVVNEWVAIVKRRHG--RLAGLV 113

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           N++LRRV   ++      A    +P W     E  +G++R  A++ A ++   + L    
Sbjct: 114 NAVLRRVEARELPP----ATRYGLPAWLYAEWEARFGRQRAEAVAAAMVAGEPLWLLAYH 169

Query: 185 DIET---WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              T           + P  G       + +  L  F  G    Q+ ++S+P +L     
Sbjct: 170 PQATHALLEEGCEVTLGPIEGTLAVRPSKPLGELAAFRRGWVQPQNPASSLPARLLEVAP 229

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
              VLDL +  G K AQL   GA VT++++   +LE+   NL RL L A  +   D    
Sbjct: 230 GERVLDLASGSGVKAAQLAALGADVTSVELHPNKLERAAANLRRLGLRARGV-VHDLRTP 288

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                   VL+DAPC+ TGT+R HP++      +     A  QR+LL    +   PGG++
Sbjct: 289 PDLPPAPKVLLDAPCTGTGTLRGHPELRTRVTPEATRSLAALQRELLRSAAAVTAPGGLL 348

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ C+L + +  E+ +  L + P          A     D+    +PEG          
Sbjct: 349 VYAVCALTQAEGPEMARWFLETHPDF-------EAEPFLFDLPADNAPEG---------- 391

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  G+DGFF    +R
Sbjct: 392 SSVLPLGGLDGFFIARFKR 410


>gi|116492597|ref|YP_804332.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
           25745]
 gi|116102747|gb|ABJ67890.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
           25745]
          Length = 444

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 110/463 (23%), Positives = 194/463 (41%), Gaps = 42/463 (9%)

Query: 1   MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +  N AR ++  +L  +  +       L+ +   S+   +   D+ L+  IV   L+ 
Sbjct: 1   MTNQNNSARNLAVDILEKID-EGSFSNIQLNQDIKSSSLIDI---DKNLLTEIVYGVLQH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              +D  L   +          +  LLR +V Q+ +LD V D+A+ + ++E AK  + N 
Sbjct: 57  RLTLDFYLADYIRKP-EMTPRWVINLLRTAVFQMEFLDRVPDFAIFNESIEIAK-LRGND 114

Query: 119 HFAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDA 171
              K+V  +LR   R        I       +    +  W  +++    G+E+ ++I  +
Sbjct: 115 GIRKMVTGVLRSYQRNGKPSFDSIKNPVEKLSTQYSVAPWIVDQMLYELGEEKCISILKS 174

Query: 172 CISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVW 223
              P ++ +               L      T     K+        SI     + +G  
Sbjct: 175 INQPSHLAVRINRWNKTHADIIKDLEYEYTVTTSAIAKDGLRLSKGASISDTRSYIDGDL 234

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLR 280
            VQD SA +  +         VLD CAAPGGKT Q+        +VT  D+ ++R++ ++
Sbjct: 235 TVQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTGWDIYQKRVQLIQ 294

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
            N  R+HL        DA        + FD +LVDAPCS  G +RR P++ + +   D  
Sbjct: 295 DNAQRMHLENVKTEVQDAIAPREDLDESFDRILVDAPCSGIGLMRRKPEIRYLKSKKDSS 354

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q K+L      +K GG++ +S C++ +++++E ++K L   P   +L    +   
Sbjct: 355 DLHQLQLKILDNIAKMLKVGGVLTYSTCTILRKENQETIEKFLAIHPEFEQLKVETAKKI 414

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           K     ++L+      I PD  E         DGFF   L+++
Sbjct: 415 KQNRDELSLN------IYPDDFES--------DGFFIANLKKV 443


>gi|72161480|ref|YP_289137.1| RNA-binding Sun protein [Thermobifida fusca YX]
 gi|71915212|gb|AAZ55114.1| putative RNA-binding Sun protein [Thermobifida fusca YX]
          Length = 476

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 111/469 (23%), Positives = 181/469 (38%), Gaps = 47/469 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR V+  +L  V  +      LL +   +   R ++ RD  L   +   TLR   
Sbjct: 24  RPRDPARRVAYDVLYAVQTRDAYANLLLPVLLRE---RGITGRDAGLATELTYGTLRLQG 80

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             DAVLD  +  SL      +  LLR+   Q+L +DV  +A V   V+ A+R   + H A
Sbjct: 81  SYDAVLDACVDRSLRSVDTEVLPLLRMGAHQLLSMDVPPHAAVSSTVDLARRIVGH-HRA 139

Query: 122 KLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKE----- 163
           + VN++LR+V+   +                  +A     P W  +      G E     
Sbjct: 140 RFVNAVLRKVTARDLTGWLSVLAPDRKTDPVGHLAITHSHPRWVVQAFAEALGDETSSGL 199

Query: 164 -RVLAISDACISPLYIDLTVKFDIETWAHKLN--AVMLPTGGIRLKELPESIVSLPGFAE 220
                +  A      + L  K    T    ++  AV                  L    +
Sbjct: 200 KETERLLTAHNERPRVTLLAKPGRATVTDLVDEGAVAARYSPYGAVLPEGDPGMLRLVRQ 259

Query: 221 GVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVS 272
           G   VQD ++        ++  +  +   LD+CA PGGK A +       G ++ A +V 
Sbjct: 260 GRAVVQDEASQLVALALSRVPVSGPDQQWLDMCAGPGGKAALMAGLVGERGGRLLAAEVQ 319

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
             R   +   + R    +  +I  D         +FD VLVDAPC+  G +RR P+  W 
Sbjct: 320 PARAGLVARAVHRSLGNSARVIVADSTQPPWRDGIFDRVLVDAPCTGLGALRRRPESRWR 379

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
           R  +++ +    QR LL + +  V+PGG+V +  CS    ++  VV  VL       +L+
Sbjct: 380 RTPENLAELVPLQRALLNRALDAVRPGGVVGYVTCSPHLAETRGVVTDVLAGR-DDADLL 438

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +  D+A     + +++  P           G D  F   LR+
Sbjct: 439 NAARHLPEVPDVA----ADRFVQFWPH--------RHGTDAMFLALLRK 475


>gi|325697709|gb|EGD39594.1| RNA methyltransferase Sun [Streptococcus sanguinis SK160]
          Length = 438

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 192/451 (42%), Gaps = 34/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +       L+     S    L+Q D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEVLEEVFEEGAYSNIALNRALSQS---SLNQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124
           L  ++     +    L  LL +S+ Q+LYLD +  +AVV  AVE AK R + +  FA  +
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAVVHEAVEIAKIRKRGSEKFANAL 123

Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178
              + R             +R +    +P W  + L   YG+ER LAI  +    S   I
Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKASI 183

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +T          +L A         L +          F  G   +QD S+ +      
Sbjct: 184 RVTDMSRKAELRQRLGAEDSLLSPSALFKKQGHFAGHQLFESGAITIQDESSQLVAPTLD 243

Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295
                 +LD C+APGGKT  +   ++   +TALD+   +LE +  N +RL L       +
Sbjct: 244 IEGEEQILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303

Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L    
Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +G 
Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           I ITP++ E         DGFF    R++ +
Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438


>gi|192360951|ref|YP_001984033.1| ribosomal RNA small subunit methyltransferase B [Cellvibrio
           japonicus Ueda107]
 gi|190687116|gb|ACE84794.1| ribosomal RNA small subunit methyltransferase B [Cellvibrio
           japonicus Ueda107]
          Length = 432

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 208/453 (45%), Gaps = 41/453 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +  R  ++ +L+ ++R++ SL+ LL           ++++D+ L++ +     R+ P++ 
Sbjct: 2   IPVRAAATQVLAQILRQQGSLSSLLPAMSVK-----IAEQDRPLLQQLCFGVCRYYPQLQ 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA---KRDKENRHFA 121
           A    +L   L  K   +Q LL + + Q+++  + D+A +   VE     K+    +   
Sbjct: 57  AYTSLLLDKPLRAKDSDVQALLLLGLYQLIHTRIPDHAAIGETVEVTRDIKKAWATKLVN 116

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            ++    R       +L    A  S  P+W +  L   +  ++  ++  A        L 
Sbjct: 117 GVLRQFQRDQQTLGEKLASDRAFSSNHPDWLEGMLRKSWP-QQTDSLLAANNEHPPFTLR 175

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +       + +  +L A+ +  G                  SLPGFA+G+  VQD +A +
Sbjct: 176 LNTRHMSRDDYLAQLRALDIAAGATPFSPYGITLVQACDPRSLPGFAQGLISVQDEAAQL 235

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L      L VLD C APGGKT     I    KVTA+DV +RRL+++R NL RL + A
Sbjct: 236 SGDLLQLAPGLRVLDACCAPGGKTGHLLEIEPRMKVTAMDVEERRLQRVRDNLGRLGVTA 295

Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
            DI   D      +   + +D +L+DAPCS+TG IRRHPD+   R  ++I + A  Q +L
Sbjct: 296 -DIRCGDGTRPEAWWDGEPYDRILLDAPCSATGIIRRHPDIKVLRTPEEIARLAQLQGQL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGGI++++ CS+  +++  VV+  ++  P          A   ++D+   L
Sbjct: 355 LDSLWPLLKPGGILLYATCSVMPRENTRVVEAFIQRQP---------EARCDTLDVPWGL 405

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++ P           G DGF+   LR+
Sbjct: 406 LQPCGRQLLPQ--------PEGHDGFYYARLRK 430


>gi|254483320|ref|ZP_05096551.1| ribosomal RNA small subunit methyltransferase B [marine gamma
           proteobacterium HTCC2148]
 gi|214036415|gb|EEB77091.1| ribosomal RNA small subunit methyltransferase B [marine gamma
           proteobacterium HTCC2148]
          Length = 433

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 121/453 (26%), Positives = 205/453 (45%), Gaps = 43/453 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           ++ R  ++ ++  V+    SL   L       A   ++ RD+ L++ +   TLR  PR++
Sbjct: 3   LDTRAAAARIVGDVL-SGKSLNQTLP-----PALEKVAPRDKGLLQQLCYGTLRQAPRLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+L+ +L   L  K   +  LL   + Q+    + D+A V   V   K  K+      L 
Sbjct: 57  ALLNQLLDKPLREKDRDVHGLLLCGLYQLEDTRIPDHAAVSATVAATKALKKP-WAKGLS 115

Query: 125 NSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           N++LRR  RE+               P+W  + +   +  E+  AI DA  +   + L +
Sbjct: 116 NAVLRRFLRERDSLLTKLPEGAGHAHPQWLFDIINEQWP-EQANAIIDANNAQPPMTLRI 174

Query: 183 KF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233
                +   +  +LNA  +      L            ++ LPGF  G   VQD +A + 
Sbjct: 175 NARRGNRADYLLRLNAAGIAAKEGDLSPQAIYLESARDVLELPGFETGDASVQDEAAQMA 234

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA 290
             L        VLD CAAPGGK+  ++       ++TA+D+  +RLE+++ NL+RL L A
Sbjct: 235 ALLLAAQPGERVLDACAAPGGKSCHILELQPALGELTAMDLDPQRLERVQQNLERLGLQA 294

Query: 291 EDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             I   D  +  P    + FD VLVDAPCS++G IRRHPDV   R  +DI      Q  +
Sbjct: 295 SLI-AGDGANPPPVLAAQSFDKVLVDAPCSASGVIRRHPDVKSLRRQNDIASLGAQQTAI 353

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +KPGG ++++ CS+   ++  VV   L+++   + + P         ++   +
Sbjct: 354 LQGLWPLLKPGGRLLYATCSILDGENNSVVNSFLKATDDAILVQP---------ELTWGV 404

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +     ++ P++        SG DG F   + +
Sbjct: 405 TAGVGRQLLPNI--------SGPDGLFYALIEK 429


>gi|223940862|ref|ZP_03632690.1| sun protein [bacterium Ellin514]
 gi|223890472|gb|EEF57005.1| sun protein [bacterium Ellin514]
          Length = 444

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 105/430 (24%), Positives = 187/430 (43%), Gaps = 31/430 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L+  + +      LL++E   +    LS  D+ L + +V   +R+   ++ 
Sbjct: 14  KPRQIAVRVLTERLSQEEYTENLLEIELSRAR---LSAPDRGLCQELVYGIVRWQETLNW 70

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE-------N 117
           ++D    +   R+K  +Q LL++ + Q+ +LD + ++A V   VE AK           N
Sbjct: 71  LIDR--KTEGRRQKPEMQVLLQLGLYQMFWLDRIPNHAAVHETVEIAKELGFVAQSGFVN 128

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                 +   +      +   + +       PEW  +R    YG E    + +   +P  
Sbjct: 129 AVLRGYLRERVETEKLLEEVKIAQPQIGYSHPEWVYQRWLERYGAEHTAKLMEWNNTPAR 188

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPE----------SIVSLPGFAEGVWW 224
               +     D      +     +     +   + +           +  L  F +G ++
Sbjct: 189 TYARINTLKADAAKVTAQWETEGVKFIPRQYDWIEDGLIFELESHPPLAGLKSFKDGFFY 248

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           +QD S  + V+        SVLDLCAAPGGKT      + +  ++ A D+S  RL  LR 
Sbjct: 249 IQDPSTLLSVRELDVKAAHSVLDLCAAPGGKTTMIAQQMQNRGQIVAQDISDDRLALLRE 308

Query: 282 NLDRLHLYAEDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           N  RL +      I  +A    P + FD VL+DAPCS+TG +RR  D+ W    +++ + 
Sbjct: 309 NYVRLGVTCVVASIAPNAVIANPAQRFDRVLIDAPCSNTGVMRRRVDLRWRIQPEEVERL 368

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q +LL +    +KP GI+V+S CSL+ +++ +VVQ+ L  +P   EL          
Sbjct: 369 RETQLELLRRAAPRLKPNGIMVYSTCSLEPEENSQVVQQFLSENP-DFELKSERQLTPFG 427

Query: 401 IDMAMALSPE 410
            D+  A + +
Sbjct: 428 NDVDGAYTAK 437


>gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
 gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
          Length = 432

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 116/453 (25%), Positives = 197/453 (43%), Gaps = 37/453 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+     R +++ +L  V  +  SL+  L          L  Q     ++A+   T R+ 
Sbjct: 1   MQPHAPLRAIAAEVLLSVE-QGQSLSQCLPPSLLRLPLNLRPQ-----LQALCYGTCRWF 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R+D  L   +   L      +  L+ V++ Q+ +   A YAV++  VE  +   +  H 
Sbjct: 55  HRLDDELQGRMKKPLKNHDRVVHHLMLVALFQLRFSQQATYAVLNETVEACRAMDKP-HL 113

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-ID 179
             LVN +LR   RE      +       P W  E+L + +  +    +          + 
Sbjct: 114 TGLVNGVLRSAEREGAPAAAKDTSRYSHPGWMIEKLRHNWPDDWQAIVDANNTQAPMTLR 173

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +   +F  + +   L    +     R          P  + +LP FAEG   VQD +A +
Sbjct: 174 VNALRFSRDEYLQLLLDAGIDASATRFAPHGIQLARPVPVDALPWFAEGAVSVQDEAAQL 233

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              L        +LD CAAPGGKT    +     A+V A+D S +RL +++ NLDRL L+
Sbjct: 234 CTTLLDLAPGQRILDACAAPGGKTCAILESCPQAAEVVAIDESAQRLPRVQENLDRLDLH 293

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        D   +   + FD +L+D PCS++G IRRHPD+   R   D+V  A  Q  L
Sbjct: 294 ASLLQADAADIDQWWDGQPFDRILLDLPCSASGVIRRHPDIKLLRRESDVVPLAQIQLGL 353

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L+     ++PGG +V++ CS+  Q++  +VQ+  +      EL+ + + + +++      
Sbjct: 354 LVAMWRILQPGGRLVYATCSVFPQENHRIVQRFCKQ-QTDSELITIEALWGRTMPAGR-- 410

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++ P        ++ G DGFF   L +
Sbjct: 411 ------QLLP--------LNDGHDGFFYAVLEK 429


>gi|84500523|ref|ZP_00998772.1| ribosomal RNA small subunit methyltransferase B, putative
           [Oceanicola batsensis HTCC2597]
 gi|84391476|gb|EAQ03808.1| ribosomal RNA small subunit methyltransferase B, putative
           [Oceanicola batsensis HTCC2597]
          Length = 465

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 137/433 (31%), Positives = 211/433 (48%), Gaps = 20/433 (4%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            +  L+S V+ ++ +L  LL        F      D+   + +   TLR L R+D +L  
Sbjct: 49  AAHQLVSSVIDEQKTLADLLGRTGPLGRF---DPADRARAQRLATETLRHLGRLDTLLAE 105

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
            L    P     +   LR++  ++   + A + VV+ AV        +     + N++LR
Sbjct: 106 HLSHMPP---LPVLITLRIATYELATSE-AAHGVVNSAVTHVAAMPRHNRLKGMTNAVLR 161

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD--IE 187
           +V+         +    +  +W +  L   +G+  V+A+  A      +DLT +      
Sbjct: 162 KVAATAPSRWPDLPPSPLP-DWLRAPLVMAWGEAGVVAMEAAHARGAPLDLTPRDPSAAA 220

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
             A +L A +LPTG +R+    + +  L GF  G WWVQDA+A+IP +L G      VLD
Sbjct: 221 DMAQRLEARVLPTGNLRIDRPVQ-VSRLEGFDAGEWWVQDAAAAIPARLLGARPGEKVLD 279

Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF 307
           +CAAPGGKT QL  +GA+VTALD+S  R E++  NL R  L AE ++         +  +
Sbjct: 280 MCAAPGGKTLQLAAAGAEVTALDISAARTERITENLARTGLGAEIVVA--DALDFDRTGW 337

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           DA+L+DAPCS+TGTIRRHPD+   +D   I      Q  L+   +S ++PGG +VF  CS
Sbjct: 338 DAILLDAPCSATGTIRRHPDLPHAQDGSRIGDLIALQSGLIDHALSLLRPGGRLVFCTCS 397

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L   + E  V + L   P    L    +        A  ++ EG +R+ PD    +    
Sbjct: 398 LIPDEGEVQVAEALARHPG---LSTDPADLDLPGLEADWITQEGGLRLRPDHWAGL---- 450

Query: 428 SGMDGFFAVALRR 440
            GMDGF+   LR+
Sbjct: 451 GGMDGFYIAMLRK 463


>gi|167757026|ref|ZP_02429153.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
 gi|167703201|gb|EDS17780.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
          Length = 417

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 110/450 (24%), Positives = 188/450 (41%), Gaps = 52/450 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L     ++  L   L+     S    LS+ D+ L   IV  T++    ++  
Sbjct: 2   ARTTALDVLIKYQNEQSYLNITLNDYLEKSL---LSRNDKDLATRIVYGTIQNKLYLEYQ 58

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     + K   + +L +S+ Q+++LD V DYAV+D AV  AK+   +    K VN
Sbjct: 59  LAPYIQG--KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKK--RDNFAGKFVN 114

Query: 126 SILRRVSREKIELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +ILR   R     +       RI+  +  P W  + L   Y       I     +P    
Sbjct: 115 AILRNFLRNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRA 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
             V     T A  L       G      L     +I +   F  G+  +QD S+ +   L
Sbjct: 175 ARVNILKTTKAQLLTDENFEAGNLSPDGLLYRAGNIANTDYFKNGLVTIQDESSQLIAPL 234

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   VLD+C APG KT     ++ +  K+ A D+ + +++ +  NL RL +   ++
Sbjct: 235 LDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNNVEL 294

Query: 294 IEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
              DA     K     FD +L+DAPCS  G ++R P++ +  D+  +      Q KLL  
Sbjct: 295 HVGDATLLKEKYSEESFDKILLDAPCSGLGVMKRKPEIKYH-DSGAMDTIIPLQAKLLDN 353

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +K  G +V+S C+++K+++E+++++ L   P                   M +  E
Sbjct: 354 AYYLLKKNGKMVYSTCTINKKENEQMIKQFLDKYPD------------------MKIIEE 395

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +I P + +         DGF+   L +
Sbjct: 396 K--KILPYVYDS--------DGFYMCKLEK 415


>gi|212211692|ref|YP_002302628.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuG_Q212]
 gi|212010102|gb|ACJ17483.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 430

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 213/456 (46%), Gaps = 48/456 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ L++ V++K+ SLT LL            ++ +Q L++ +   TLR+  ++ 
Sbjct: 1   MNTRATAAILVNQVVQKKRSLTALLSA----------NKNNQSLIQELCYGTLRWYFKLK 50

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + +L + L  K + +  L+     Q+ YL++  + +V+  V  A+  K+      L+
Sbjct: 51  FIAEKLLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKP-WAKGLI 109

Query: 125 NSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N +LRR   EK EL              P WF + ++  +      + I++    P+ + 
Sbjct: 110 NKLLRRFIAEKDELFTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARPPMTLR 169

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           + + K   E +   L+   +    +           P S+  LPGF EG  ++QDA+   
Sbjct: 170 VNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQF 229

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289
              L    NN +VLD CAAPG KT+ ++     +    A+D +K+RL +++ N+ RL L 
Sbjct: 230 AAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLR 289

Query: 290 AEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            E +  +         +   +LFD +L+DAPCS+TG IRRHPD+   R   DI +    +
Sbjct: 290 QEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKK 349

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +LL    + +K GG +++S CS+   ++E+V+++ L +    VEL P N          
Sbjct: 350 LQLLNALWAVLKSGGFLLYSTCSVLPDENEKVIEEFLSTH-DKVELSPTNV--------- 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 G +++      +        DGF+   L +
Sbjct: 400 -----HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 428


>gi|170782379|ref|YP_001710712.1| putative Sun-family protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156948|emb|CAQ02117.1| conserved hypothetical Sun-family protein [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 488

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 107/468 (22%), Positives = 171/468 (36%), Gaps = 47/468 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  ++S V         LL +    +A   LS +D  L   +   TLR     D 
Sbjct: 34  PARRVAYEVVSAVRESDAYANLLLPVRIRRAA---LSAQDAALATELTYGTLRMSGYYDR 90

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V++      +      +  +LR+SV Q+L + VA +A V+  V+ A+    +R     VN
Sbjct: 91  VIELAAGRPVTAIDAPILDVLRLSVHQLLSMRVATHAAVNEGVDMARAV-GSRSATGFVN 149

Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE----RVLAIS 169
            +LR ++R + +  ++             A     P W    L     +E     +  + 
Sbjct: 150 GVLRTITRSEPDEWRQRVLDSAASDDERLALEHSHPLWVLRALRQALAREGRDDELEDLL 209

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            A  +   + L     + T   +          +         +  PG A+G   VQD  
Sbjct: 210 RADNAAPAVSLVALPGLATV-EETGEQPAAFSPLGAYLEGGDPMDAPGVADGRVRVQDEG 268

Query: 230 ASIPVQLFG----TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           + +                 LDLCA PGGK A L     +  AL ++   L   R  L R
Sbjct: 269 SQLAALALSRARAVTPGERWLDLCAGPGGKAALLAAEAGRSGAL-LTANELVPARAGLVR 327

Query: 286 LHLYAED----IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             L A      + E+D      +    FD +L+DAPCS  G +RR P+  W +   D+  
Sbjct: 328 DALRAVPGDTEVWELDGTTVGEEHPGAFDRILLDAPCSGLGALRRRPEARWRKTPRDVAG 387

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI------PVELVPL 393
               Q  L+   I  + PGGI+ +  CS    ++  +VQ  L+  P          L  +
Sbjct: 388 LGALQAGLIDSAIGALAPGGILAYVTCSPHLAETRAIVQAALQRHPDVSARDTRAVLQEV 447

Query: 394 NSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +        S  G  +++ P           G D  F   L R
Sbjct: 448 ADGDLELPAADADASTHGSSVQLWPH--------RHGTDAMFIALLTR 487


>gi|323519897|gb|ADX94278.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 434

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +  +   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKLISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETEDFEQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ + +          + E    I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQSRACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGK A        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKMAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWTPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +       P   E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434


>gi|262280615|ref|ZP_06058399.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258393|gb|EEY77127.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 434

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 204/454 (44%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  E  Q +     +P W  +R++  +G E+  ++  +      + L 
Sbjct: 119 GIVNAILRRATRETDEFQQGLQQAHGLPSWLYKRVKKDWG-EQTESLCQSLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL +  +      L E          I  LPGF EG + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSSEIKARACILSEAGIVLEQSVQITQLPGFEEGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L   LNN +V+D CAAPGGKTA        AK+ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAKLIAIDQDSNRLVRVTENLNRLALDQ 297

Query: 291 ED--IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 THTEILAADATQWVPAQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +           E+          I+    + 
Sbjct: 358 QHMWQQLKAGGTLLYITCSVLKAENEQQMIDFFAEHTDAKEIK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P             DGF+   ++++ 
Sbjct: 409 QIHGRQLLPQAQSG--------DGFYYCKIQKIA 434


>gi|325695223|gb|EGD37124.1| RNA methyltransferase Sun [Streptococcus sanguinis SK150]
          Length = 438

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 191/451 (42%), Gaps = 34/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V  +       L+     S    L+Q D+ LV  +V  T+     ++  
Sbjct: 8   ARWQALEVLEEVFEEGAYSNIALNRALSQS---SLNQADKGLVTELVYGTVARKITLEWY 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124
           L  ++     +    L  LL +S+ Q+LYLD +  +AVV  AVE AK R + +  FA  +
Sbjct: 65  LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAVVHEAVEIAKIRKRGSEKFANAL 123

Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178
              + R             +R +    +P W  + L   YG+ER LAI  +    S   I
Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKASI 183

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +T           L A         L +          F  G   +QD S+ +      
Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALFKKQGHFAGHQLFESGAITIQDESSQLVAPTLD 243

Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295
                 +LD C+APGGKT  +   ++   +TALD+   +LE +  N +RL L       +
Sbjct: 244 IEGEEQILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303

Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +DA           FD +LVDAPCS  G IRR PD+ + ++  D       Q  +L    
Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             ++ GGI+ +S C++  +++ EVV+K L S P   +++  +            +  +G 
Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           I ITP++ E         DGFF    R++ +
Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438


>gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171736|gb|AEE20990.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 437

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 100/450 (22%), Positives = 185/450 (41%), Gaps = 39/450 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  ++ +L  ++ + +S    L     D      +++D+  ++ +    LR LP +  
Sbjct: 11  NLRADAARVLFQILEQGMSARECLPNAQQDH-----NEKDKAWLQEMTYGVLRQLPLLQH 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            L  +L   L +    ++ L+ +   Q+ +  V+ +A V   V  A           LVN
Sbjct: 66  WLRLLLDKPLKKNVKIVEHLIMLGFYQLAFSRVSTHAAVSECVN-ACAPLNAVATKGLVN 124

Query: 126 SILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTV 182
           ++LR   R+++          +S  P+W  ++L   Y ++    +    +    ++ +  
Sbjct: 125 AVLRNFIRQEMANELPDNEQILSGQPKWLYKKLLTAYPEKHTPILEAMQVKAPIWLRVNQ 184

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQ 235
                    +L          + ++           I +LPG+ EG + VQD +A +   
Sbjct: 185 NQKSTDEYCRLLDENDIFYERQDEQPQGLILSKGCDITTLPGYDEGWFAVQDGAAQLAAN 244

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA-- 290
           L  +  N  +LD CAAPGGKT  ++          A+D+   RL+++  NL RL   A  
Sbjct: 245 LLNSQPNERILDCCAAPGGKTCHILELEPKIASCVAMDIDPSRLQRIEENLTRLGHQASL 304

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                 +   +   + FD +L+DAPCS+TG IRRHPD+ W R + DI      Q K++  
Sbjct: 305 ICGDASEPKAWWDGEQFDRILLDAPCSATGIIRRHPDIKWLRKSSDIDTLVALQAKIIDA 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +KPGG ++++ CS+   +++  +   L  +                 +       +
Sbjct: 365 IWPLLKPGGTMLYATCSILPAENQLQISAFLERTADAA----------LDPEFNNDAIDK 414

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +I P            MDGF+   L +
Sbjct: 415 PGRQILPG--------EKHMDGFYYARLLK 436


>gi|319442113|ref|ZP_07991269.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           variabile DSM 44702]
          Length = 525

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 159/475 (33%), Gaps = 54/475 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           SG   R +   +L  V          L     +        RD      +   TLR    
Sbjct: 64  SGDRVRDIVFEVLRKVSTDAAFANIALPAALREQKIHG---RDAAFATELTYGTLRMQGL 120

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DAV+       + +    +   LR+   QIL   V D+A VD  VE  K +      + 
Sbjct: 121 LDAVIAEAAGRPVDKIDAVVLDALRLGAYQILRTRVDDHAAVDTTVELVKAN-GEAKASG 179

Query: 123 LVNSILRRVSREKIELLQRI------------AGISIIPEWFKERLENF------YGKER 164
             N +LR ++R   E  +              A  +  P W  E                
Sbjct: 180 FTNGVLRTLTRTPAETWESRVTAKVTDPVARLALQTSHPTWIAEAFNAALGGTPDAPATE 239

Query: 165 VLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
           +     A  +   + L  +      E  A              +         L    +G
Sbjct: 240 LADALAADDARPVVHLAARPGQMSGEELALVTGGDEGRWSPYAVYLPEGDPGDLDPVRDG 299

Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277
           +  VQD  +       ++     ++   LDLC+ PGGKTA L        A  V      
Sbjct: 300 LAGVQDEGSQLIALAMLRAEVADDHGRWLDLCSGPGGKTAFLASWAMGDRAT-VDAVEPA 358

Query: 278 KLRCNLDR-------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
             R  L R                   +I  +D         FD VLVDAPC+  G +RR
Sbjct: 359 AHRAKLVRTATSGLPARVHEGDGRRLAEIRGLDMPVSPEGDGFDRVLVDAPCTGLGALRR 418

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P+  W +   D+ +    Q+ LL   +   +PGGIVV+S CS    ++ +VV+ V   +
Sbjct: 419 RPEARWRKTPADVAELVPLQKDLLRSALKATRPGGIVVYSTCSPHPAETRDVVRAVADQT 478

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
              +E     +A +  +  +  L    ++++ P           G D  F   LR
Sbjct: 479 GAVIEDA---TALFPDLVESGTLDSAPFVQLWPH--------RHGTDAMFFAMLR 522


>gi|312876959|ref|ZP_07736934.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796274|gb|EFR12628.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 406

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 181/425 (42%), Gaps = 58/425 (13%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VAD 100
           +++D+ L   +V+  LR+   ID  ++FV    +      +  +LRV+  ++L+L+ + +
Sbjct: 10  NEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVK--DRRILNILRVATYELLFLEKIPE 67

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE------------LLQRIAGISII 148
           YA V  A E A +   + H    VN+ILR + R K +                ++     
Sbjct: 68  YATVSEACEIASKI--SPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSYVSIKLSY 125

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGI-- 203
           P +  + LE  YG E+ L I +   +     + +     D+ T   +L            
Sbjct: 126 PRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKKTDVNTLTQELEKNGFKYEINSH 185

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGK-TA 257
               +  L  +I     + EG ++ QD ++S+              V+DLCAAPGGK   
Sbjct: 186 NNEIIHVLKGNIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKVIDLCAAPGGKTFN 245

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
              V    V A D+++ +L+ LR N+ RL      + + DA  + P     FD V+ D P
Sbjct: 246 CAEVIDGFVVACDINEHKLDVLRENILRLGFDNIIVAKSDAEVFNPDFAEKFDIVIADLP 305

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           C+  G IR+ PD+ W +   DI K    Q ++L     ++K GG++ +S C+L ++++EE
Sbjct: 306 CTGFGAIRKKPDIKWNKTQQDIQKLHELQVRILDNAAGYLKKGGLLFYSTCTLSRKENEE 365

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            V K L        LV   +                   I PD  +         DGFF 
Sbjct: 366 TVLKFLDKH-RDFSLVSQTT-------------------IFPDEFK--------CDGFFI 397

Query: 436 VALRR 440
             LR+
Sbjct: 398 AKLRK 402


>gi|220933384|ref|YP_002512283.1| sun protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994694|gb|ACL71296.1| sun protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 432

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 196/454 (43%), Gaps = 42/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+ R ++   L  V+    SL+ +            L+ RD+   +A+   TLR+  R++
Sbjct: 1   MSPRQITLKALKRVVINGASLSDV-----LPPLLAPLAPRDRAFAQALAFATLRWHHRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L   +  K   +  ++ + + ++LYL   DYA +      AK          +V
Sbjct: 56  ALTGRLLSKPMRDKDRDVGLVIEMGLCELLYLRTPDYAAIQETAGLAKS-LGKPWATGVV 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRRV RE      +L +  A    +P+W    L   + ++   A+ +A  +   + L
Sbjct: 115 NAVLRRVQREGDALLADLDRDPALRLSLPDWLLGALRKAWPEDW-QALGEALNAQAPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V   +   E +  +L           +         P  +  LPGF  G+  VQDA+A 
Sbjct: 174 RVDLSRITREAYRVRLAEAGHDAEPHPVAASALVLAAPVDVNQLPGFDAGLVSVQDAAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   L      + VLD CAAPGGKT      +     +TALDV   RL ++  NL R   
Sbjct: 234 LAAPLLDCRPGMRVLDACAAPGGKTLHLLESVAGDLDLTALDVDAERLRRVEENLARAGR 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A            +     +D +L+DAPCS+TG IRRHPD+   R  +DI + A  Q  
Sbjct: 294 RARLVAGDGEHPAQWHEGGAYDRILLDAPCSATGVIRRHPDIKLLRKGEDIPRLAARQAA 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      + PGG+++++ CSL  +++ + V+  L++     E  PL   + +S      
Sbjct: 354 LLEALWPLLAPGGMLLYATCSLLPRENADQVRVFLQAH-GDAEESPLPEDFGRSTSPG-- 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          +I     GMDGF+   L +
Sbjct: 411 --------------RQILAGEQGMDGFYYARLIK 430


>gi|119385444|ref|YP_916500.1| Fmu (Sun) domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119375211|gb|ABL70804.1| Fmu (Sun) domain protein [Paracoccus denitrificans PD1222]
          Length = 535

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 135/440 (30%), Positives = 214/440 (48%), Gaps = 34/440 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           AR  +  LL+ V     +L     L      +      +             LR   R+D
Sbjct: 125 ARSGALRLLAAVDD-GATLDEAGALTDRLAPAERARARRLALE--------VLRRADRVD 175

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD-KENRHFAKL 123
            +L  +L          + ++LR++  ++L L  A +  V+ AV  A+   ++ +  A +
Sbjct: 176 LLLAPMLARRPR---PEIMRILRLAAVEMLALGEAPHGAVNAAVALARASGRKGQAAAGM 232

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           VN++LR+++       +       +P W +  +   +G++   AI  A  +   +DLT K
Sbjct: 233 VNAVLRKIAGAAEAWARLSPQK--MPFWLRAPVVAAWGEDAARAIEAAHEAGAVLDLTPK 290

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                         LPTG  RL      + +LPG+AEG WWVQDA+A++ V++       
Sbjct: 291 ------GADCPGEALPTGSHRLPAGT-RVSALPGYAEGDWWVQDAAAALAVRVLDPQPGE 343

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
            V DLCAAPGGKT QL  +GA+VTA+D+S+ RL ++  NL R  L A  +   DA D+ P
Sbjct: 344 RVADLCAAPGGKTLQLAAAGAEVTAVDISELRLARVAENLARCGLQARLV-AADALDWRP 402

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            +  DAVL+DAPCS+TGTIRRHP++   RD   + +    Q +L+   +  +KPGG +++
Sbjct: 403 DQPLDAVLLDAPCSATGTIRRHPELPRIRDGAGLAELTGLQARLIDHALDLLKPGGRLIY 462

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           + CSL   + E+ +  VL   P  V   P              ++P+G +R+ PD+    
Sbjct: 463 ATCSLLPAEGEDQLAAVLARHPGLVVEPPRAPGV-----EPDWITPQGGLRLRPDLW--- 514

Query: 424 DGVSSGMDGFFAVALRRLIQ 443
                GMDGFF   LR+  +
Sbjct: 515 -PERGGMDGFFIARLRKSAE 533


>gi|85375086|ref|YP_459148.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
 gi|84788169|gb|ABC64351.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
          Length = 415

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 150/440 (34%), Positives = 218/440 (49%), Gaps = 36/440 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +G++AR  +  +L  V+R+  +L                S  D+ L RAI N TLR+L  
Sbjct: 5   TGIHARRAALQMLDAVLRRGETLEQAEGAALRQVR----SAPDKALARAIANETLRWLTD 60

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
            DA++D      LP      + +LR+ +AQ L L+   +AV+   +            A 
Sbjct: 61  FDALIDSATKQRLPD-DAKARTVLRLMLAQWLRLETPPHAVIATGLPL---------LAG 110

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
               +   V     +   R+     +P   +ER       +R   I+     P  +DLT+
Sbjct: 111 GPRRLAHGVFSTLTKKEVRLPAAPTLPVRVRERWG-----DRADEIAAGLAEPPPLDLTL 165

Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +   ET  WA++L A     G +RL     ++ +L GF EG WWVQD +ASIP +L G  
Sbjct: 166 RDAGETQHWANQLAADSYAPGHLRLPRGS-AVETLAGFREGAWWVQDLAASIPARLLGPG 224

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLCAAPGGKT QL  +G KVTALD+SKRRL  L+ NL R +L A  +   DA  
Sbjct: 225 EGRHVLDLCAAPGGKTLQLAAAGWKVTALDISKRRLGLLKDNLTRTNLKASTVR-ADALA 283

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + PK  FDA+L+DAPC++TGT RRHPDVL       I + +  Q  LL +   ++KPGG 
Sbjct: 284 WEPKHHFDAILLDAPCTATGTCRRHPDVLHRIGPRQIGEMSELQAALLGRAQGWLKPGGT 343

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CSL++++ +    KV         ++         +   +  S EGW+R  P ML
Sbjct: 344 LVYAVCSLEEEEGKVQAAKV---------VLTPEPVAPGELPSGLMPSDEGWVRTHPGML 394

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   G+DGFF    R+
Sbjct: 395 CT----QGGLDGFFIARWRK 410


>gi|262373879|ref|ZP_06067157.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           junii SH205]
 gi|262311632|gb|EEY92718.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           junii SH205]
          Length = 435

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 199/453 (43%), Gaps = 40/453 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             +N R      L  V +   SLT +L+         ++S+RD+ L   +    LR    
Sbjct: 10  KNLNLRAQVIKTLLAV-QNGQSLTSVLNQHI-----NMVSERDRGLYHELTLGCLRQWFS 63

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           + A+   +L   L     +L+  L + + QIL   +  +A +   V  AK+       + 
Sbjct: 64  LKAITLPLLTKPLD--NEALESCLYLGLYQILCTRIPVHAAISETVNAAKQ-LGFEPMSG 120

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN+ILRRVSRE  E    +     +P W  +R++  +  E+   +  A      + L V
Sbjct: 121 LVNAILRRVSRETDEFQIALNNTHGLPSWLFKRIKKDWP-EQSEHLCQALKQVAPLTLRV 179

Query: 183 ---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233
              +   + +   L+   +      L +         +I  LPGF EG + VQD  A + 
Sbjct: 180 NERQVSRDEYLEILDEEQIDARPCMLSDVGIVLEQTGNITHLPGFEEGGFSVQDEHAQLC 239

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290
             L   L+   V+D CAAPGGKTA      +  K+ ALD   +RL ++  N++RL L   
Sbjct: 240 ATLLPNLDGKVVVDACAAPGGKTAHILERFNPKKLIALDHDAKRLLRVSENIERLGLDQT 299

Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +II  DA  +   +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L 
Sbjct: 300 EVEIIAADATTWQTPEPVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTVALQQQILR 359

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           Q    +K GG +++  CS+ K ++E+ +       P   E+          I     +  
Sbjct: 360 QMWQQLKVGGTLLYITCSILKVENEQQMVDFFADHPDAKEIK---------ISADWGIEQ 410

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               ++ P             DGF+   +++  
Sbjct: 411 IHGRQLLPSNQLG--------DGFYYCHIQKQA 435


>gi|296170731|ref|ZP_06852304.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894614|gb|EFG74350.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 461

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 169/457 (36%), Gaps = 40/457 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V  +       L     +   R +S RD      +   T R    +DA
Sbjct: 20  PARAAAFEVLRAVSERDAYANLALPALLRE---RQISGRDAAFATELAYGTCRTRGLLDA 76

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+      S       L  LLR+   Q+L   V  YA V   VEQA   + +   A  VN
Sbjct: 77  VIGAAAGRSPDTIDPVLLDLLRLGTYQLLRTRVDSYAAVSTTVEQAG-IEFDSARAGFVN 135

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170
            +LR V+    +                  A +   P W  +   +  G     + A+  
Sbjct: 136 GVLRAVAARDEKSWVEELAPDPSRDPVGHAAFVHAHPRWIAQAFADALGPAAGELDAVLA 195

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +         A  +   +       +         L    +GV  VQD
Sbjct: 196 SDDGRPQVHLAARPGVLTAAELAEAVGGTVGRYSPYAVYLPGGDPGRLAPVRDGVALVQD 255

Query: 228 ASAS---IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNL 283
             +      + L    +    LDLCA PGGKTA L   GA   A +   +    +    +
Sbjct: 256 EGSQLVARALTLVPVDDAGRWLDLCAGPGGKTALLAALGAGSGARVTAVEPAPRRADLVV 315

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +     A D++ +D      +  FD VLVDAPC+  G +RR P+  W R   D+   A  
Sbjct: 316 ENTRGLAVDVLRVDGRQTGLEPAFDRVLVDAPCTGLGALRRRPEARWRRQPADVPALAKL 375

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR+LL   I+  +PGG+V+++ CS    ++  VV   LR  P+    V     +     +
Sbjct: 376 QRELLGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHPVCA--VDTRPLFEPVDGL 433

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   ++++ P           G D  FA ALRR
Sbjct: 434 GDGP----YVQLWPH--------RHGTDAMFAAALRR 458


>gi|257417249|ref|ZP_05594243.1| fmu family protein [Enterococcus faecalis AR01/DG]
 gi|307292139|ref|ZP_07572005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0411]
 gi|257159077|gb|EEU89037.1| fmu family protein [Enterococcus faecalis ARO1/DG]
 gi|306496792|gb|EFM66343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0411]
 gi|315146584|gb|EFT90600.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX4244]
          Length = 459

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|260434429|ref|ZP_05788399.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           WH 8109]
 gi|260412303|gb|EEX05599.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
           WH 8109]
          Length = 445

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 201/465 (43%), Gaps = 59/465 (12%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+  R ++  +L  V          L+        + L   D+ LV  +    +R    +
Sbjct: 11  GLLPRRLAWDVLQAV-AAGAYADVALERVLR---MQDLKPSDRGLVTELAYGAIRQRRTL 66

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
           DA LD +      ++   L+ LL V + Q+L +  + D A V+ AVE AK  K     A 
Sbjct: 67  DAWLDRLGKVPAAKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAVELAKTSKGLARLAP 126

Query: 123 LVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +VN +LR            +   +L  ++A    +P+WF + L  + G E   A++ AC 
Sbjct: 127 VVNGVLRAALRAREAGETLQSPNDLAAQLAQSQSLPDWFTQLLIEWRGAEGAAAVASACN 186

Query: 174 SPLYIDL----------TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
               +DL           V+ D+         ++    G+R+      +   PG+AEG W
Sbjct: 187 RVPDLDLRVNRLRSSPPQVQQDLAAAGISSEPIVGCPDGLRISGHSGDLRDWPGYAEGHW 246

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLR 280
            VQD SA     L        +LD CAAPGGK   L       A++ A+D S  RL+++ 
Sbjct: 247 CVQDCSAQWIAPLLDPKPGDRILDACAAPGGKATHLAELVGDQAEIWAVDRSAGRLKRVV 306

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            N  RL L + + +  DA +   ++      F  +L+DAPCS  GT+ RHPD  W     
Sbjct: 307 ANAARLGLASINALAADAANLLEQRPQWRESFQRILIDAPCSGLGTLARHPDARWRVTPQ 366

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            +      Q+ LL   +  + P G++V++ C++   ++++ +Q++L+  P          
Sbjct: 367 SVRGLLPQQQALLDGLLPLLAPQGVLVYATCTIHPDENQKQIQELLKRQP---------- 416

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     AL  E   ++ PD        +SG DGF++  L+R
Sbjct: 417 ----------ALRLEQESQLWPD-------QASGGDGFYSAVLQR 444


>gi|213158779|ref|YP_002321200.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB0057]
 gi|301345911|ref|ZP_07226652.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB056]
 gi|301596687|ref|ZP_07241695.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB059]
 gi|213057939|gb|ACJ42841.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii AB0057]
          Length = 434

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +            + E    I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +           E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHTDAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QTYGRQLLPEAQSG--------DGFYYCKIQKIA 434


>gi|224541737|ref|ZP_03682276.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525341|gb|EEF94446.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM
           15897]
          Length = 439

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/450 (22%), Positives = 176/450 (39%), Gaps = 50/450 (11%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            M  R  +  +L    +    L   L+        +  S  ++ L+  +V  T++    +
Sbjct: 25  NMKERDTALDILIDYEKNESYLNITLNHTLT----QDFSPSERGLITTLVYGTIQNRLYL 80

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +  L+  + + L       + LL +S+ Q  YLD  DYA+V+ AVE  K  + N+    +
Sbjct: 81  EYQLEPHIHTRLK---VVEKMLLLMSLYQHFYLDTPDYAIVNEAVEIIKE-RRNKRAGGM 136

Query: 124 VNSILRRVSREKI-----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           +N+IL    +E       +  +R++  +  P W  +     YGKE    I  A       
Sbjct: 137 INAILHSCFKETRSLDDLDHDERLSISTSHPLWMVKMFNAQYGKETTEKILHADNEVPLK 196

Query: 179 D---LTVKFDIETWAHKLNA-VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
                T K   E +  K             +     +I     F EG+  +QD S+ +  
Sbjct: 197 SGRMNTYKMSREEFLKKYPEFTPGYLSPDSVLLKEGNIAHTEAFKEGLVTIQDESSQMVA 256

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
           +L        VLD+C APG KT  L   + +   +   D+   + + +  N  RL L   
Sbjct: 257 RLLNPGEEDVVLDMCGAPGSKTTHLGILMNNKGLIDVYDLYPHKAKLIEDNAKRLGLSNI 316

Query: 292 DIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   D+ D     K +  +L+D PCS  G + R P++ +  D+D + +    Q KLL  
Sbjct: 317 HVHTGDSTDLSLFDKQYTKILLDGPCSGLGVLSRKPEIKYH-DSDAMDEIILIQAKLLEN 375

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             S    GG +V+S C+++K+++E+ ++K ++  P    +                    
Sbjct: 376 AYSLCIKGGNIVYSTCTINKKENEKQIEKFIKKHPDMHVVEE------------------ 417

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       I       DGF+   L +
Sbjct: 418 ----------RTILPFEYHSDGFYMCLLEK 437


>gi|109896353|ref|YP_659608.1| sun protein [Pseudoalteromonas atlantica T6c]
 gi|109698634|gb|ABG38554.1| 16S rRNA m(5)C-967 methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 437

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 193/450 (42%), Gaps = 39/450 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  ++ +L  ++ + +S    L     D      +++D+  ++ +    LR LP +  
Sbjct: 11  NLRADAARVLFQILEQGMSARECLPAAQQDH-----NEKDKAWLQEMTYGVLRQLPLLQH 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            L  +L   L +    ++ L+ +   Q+ +  V+ +A V   V  A           LVN
Sbjct: 66  WLRLLLDKPLKKNVKVVEHLIMLGFYQLAFSRVSTHAAVSECVN-ACAPLNAIATKGLVN 124

Query: 126 SILRRVSREKIELL--QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTV 182
           ++LR   R+            +S  P+WF ++L + Y       +    +    ++ +  
Sbjct: 125 AVLRNFIRQDTAHNLPDNEQVLSGQPKWFYKKLVDAYPDNYKTILDAMQVKAPIWLRVNN 184

Query: 183 KF-DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
           K    + +   L+   +            +      I +LPG+ EG + VQD +A +   
Sbjct: 185 KHKSTDEYCRLLDDRDVAYERQATQPQGIILSKGCDITTLPGYDEGWFAVQDGAAQLAAG 244

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G+  N  VLD CAAPGGKT  +I          A+D+   RL+++  NL RL   A  
Sbjct: 245 LLGSQPNDRVLDCCAAPGGKTCHIIELQPDLATCVAIDIESSRLKRIEENLTRLGHQATL 304

Query: 293 II--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           I     +   +   +LFD +L+DAPCS+TG IRRHPD+ W R + DI      Q K++  
Sbjct: 305 ICGDASEPASWWDGQLFDRILLDAPCSATGIIRRHPDIKWLRKSSDIDVLVALQSKIIDA 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             + +KPGG ++++ CS+   +++  +   L  +P  +     ++   +           
Sbjct: 365 MWALLKPGGTMLYATCSILPAENQLQINAFLNRTPDALLDDKFDNDAAQKPGR------- 417

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +I P   +        MDGF+   L +
Sbjct: 418 ---QILPGEKQ--------MDGFYYARLLK 436


>gi|262089741|gb|ACY24835.1| ribosomal RNA small subunit methyltransferase B [uncultured
           organism]
          Length = 430

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 208/453 (45%), Gaps = 40/453 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           ++ R  ++ +L+ +++ + SL+ LL           ++++D+ L++ +   T R+ P++ 
Sbjct: 2   ISVRAAAAQVLAKILQGQGSLSSLLPTI-----QPQVAEQDRPLLQELCFGTCRYQPQLS 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A ++ ++   L  K   +Q LL + + Q+L+  + D+A +   VE   R  +      LV
Sbjct: 57  AYVECLVDKPLRAKDSDIQALLLLGLYQLLHTRIPDHAALGETVE-VTRFLKKPWATSLV 115

Query: 125 NSILRRVSREKIELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N +LR+  R+K +L + +A         P W +  L   +   ++  I  A  S     L
Sbjct: 116 NGVLRKFQRDKSKLDKLLAQNYSFQTNHPAWIEATLRKNWPN-QLDQIIAANNSHPPFTL 174

Query: 181 TVKF---DIETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
            +         +   L       A    +      E       LP F++G   VQD +A 
Sbjct: 175 RINTQKISRAEYLALLQDLEINAAATPFSPYGITLEHACDPRKLPLFSDGWVSVQDEAAQ 234

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLY 289
           +   L      L VLD C APGGKT  ++       VTALD  +RRL ++R NL RL + 
Sbjct: 235 LSADLLQLSPKLRVLDACCAPGGKTGHMLEVEPSLHVTALDADERRLSRVRENLTRLGVN 294

Query: 290 -AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                 +    D+   +LFD +L+DAPCS+TG IRRHPD+   R  D++ K    Q KLL
Sbjct: 295 ANVLCGDGTKTDWWDGELFDRILLDAPCSATGIIRRHPDIKVLRTPDELDKLGELQAKLL 354

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               S +KPGG+++++ CS+  +++ +V++  L+             A    +D +  + 
Sbjct: 355 NNLWSLLKPGGVLIYATCSVMPKENTQVIEAFLKR---------KRDATCDLLDASWGIE 405

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++ P         + G DGF+   L ++
Sbjct: 406 QAYGRQLLPS--------TEGHDGFYYARLIKV 430


>gi|30249919|ref|NP_841989.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
 gi|30180956|emb|CAD85883.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
          Length = 426

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 106/447 (23%), Positives = 190/447 (42%), Gaps = 42/447 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           L++   +  V     +LT +L   +   +   L+ + +  ++ I    LR   ++DA+L 
Sbjct: 6   LLAVQAIREVFA-GANLTEVLRNIWQTGSH--LTPQQRGAIQDIAYGVLRHYGQLDAILH 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +L   +  +   L  LL V++ Q+ Y     +A+VD AV  +++   N   + LVN++L
Sbjct: 63  KLLNKPV--QDKQLHYLLAVALYQLRYSKAPAHAIVDHAVSSSRKITRNPAVSGLVNAVL 120

Query: 129 RRVSRE----KIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLT-- 181
           R   R+      ++          P+W+ ++L   Y ++   + ++      + + +   
Sbjct: 121 RNFMRKRTSLPDQIRNDDIARYSYPQWWIDKLRQQYPQDYEAILLAGNEHPAMILRVNRL 180

Query: 182 ---VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
              V         +                P ++  LPGF+EG+  VQDA A     L  
Sbjct: 181 RTSVDHYQAMLDAQNIDSEWLWDTALRLSRPVAVEKLPGFSEGLVTVQDAGAQFAAPLLD 240

Query: 239 TLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
               + VLD CAAPGGK+  L       ++T LD  + RL +L+ N  RL +    ++  
Sbjct: 241 VEAGMRVLDACAAPGGKSTHLAELAENIELTVLDKQEDRLARLKENFSRLKIAGYQLVCG 300

Query: 297 DAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           DA     +   +L+D +L D PCS++G I RHPD+ W R  +DI   A  Q  +L     
Sbjct: 301 DAMSPSHWWDGQLYDRILADVPCSASGVISRHPDIKWLRRPEDIDHFAQTQTAILNGLWP 360

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++ GG +++  CS+  ++++ V  K L +      L   +    +              
Sbjct: 361 LLQRGGKLLYVTCSVFNEENDAVADKFLTTHEDASRLPCSHGMLGRG------------- 407

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++ P          S  DGFF    R+
Sbjct: 408 QLLPG---------SHHDGFFYALFRK 425


>gi|228476962|ref|ZP_04061600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           salivarius SK126]
 gi|228250981|gb|EEK10152.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           salivarius SK126]
          Length = 440

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 198/452 (43%), Gaps = 36/452 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V ++       L+     S    L+ +D+ LV  IV  T+     ++ +
Sbjct: 9   ARGQALEVLEEVFQEGAYSNIALNAHLSKSQ---LTDKDKALVTEIVYGTVAHKITLEWI 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  V+     + +  +  LL +S+ Q+ YLD +  +AVV+ AV  AK     +   KLVN
Sbjct: 66  LAHVIE-DRDKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVAIAKNRGNKKGAEKLVN 124

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+          +   + +R +    +P W  ++L + YG++R LAI  +    +  
Sbjct: 125 AVLRKLSSQPLPDPSQIKRVNKRYSVQYSLPVWLVKKLIDQYGEDRALAIFQSLFVRNKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T    +E       A       + L +          F EG+  +QD ++ +    
Sbjct: 185 SVRVTDASRLEEIEEATGAERSVLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
            G      +LD CAAPGGKT  +   ++   VTALD+   +L  +  N  RL L      
Sbjct: 245 LGIQGEEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLALIEENAQRLGLADKVKT 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D        P   FD +LVDAPCS  G IRR PD+ + +D  D       Q  +L  
Sbjct: 305 QKLDASQVHQVFPADSFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFESLKAVQLDILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  ++++EV+Q  L S P   E V L+            +   
Sbjct: 365 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHP-DFEQVALDHP-------CKDIVVN 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           G + ITP+            DGFF   LR+  
Sbjct: 417 GCLAITPEQYL--------TDGFFIAQLRKKA 440


>gi|254556524|ref|YP_003062941.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
 gi|254045451|gb|ACT62244.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
          Length = 447

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 107/467 (22%), Positives = 186/467 (39%), Gaps = 46/467 (9%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M + G   R ++   L+ + +        L+    D     + +RD  L+  +V   ++ 
Sbjct: 1   MSTVGNTPRWLAVAALAKI-KNGAYSNLQLNQLINDHQ---MDRRDINLLTNMVYGVIQH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              ++  L   +     +    +++LL  ++ Q  YLD +   AV +  +E AK  K + 
Sbjct: 57  RLTLEYWLTPFVRHP-HQIDPWVRELLLSALYQWQYLDKIPQRAVFNETIEIAK-VKGHP 114

Query: 119 HFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
              + V  +L ++ R          +  +R++    +P W  + L    G E++  I  +
Sbjct: 115 GIRRFVTGVLHQMDRSGLPSFDAIKDPDERLSVTYSMPIWLIQELRRQLGAEKMERILSS 174

Query: 172 CISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
              P    L V   + T            L         + L       ++      G++
Sbjct: 175 LNQPAKQALRVNPALSTVEDVTTVLINDGLTITPSEISPLGLIATDGQAINTEAMRYGMF 234

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEK 278
            VQD SA + V       +  VLD CAAPGGKT Q         G  V ALD+   +++ 
Sbjct: 235 TVQDESAQLVVPALNLQPSDRVLDACAAPGGKTTQIAASLDAEQGGTVVALDIHANKVKL 294

Query: 279 LRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           +  N  R+H+     A ++           + FD +LVDAPCS  G +RR P++ + +  
Sbjct: 295 IGQNAARMHVADRVEATELDARKVETQFNAESFDRILVDAPCSGLGLMRRKPEIRYEKQL 354

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D +     Q  +L      +K GGI+ +S C++ +Q++++V+ K L   P   EL    
Sbjct: 355 QDSLNLQRIQLAILTAVAPTLKKGGIMTYSTCTILQQENQDVITKFLADHP-DFELQTTP 413

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      D       E  + I PD            DGFF   LR+ 
Sbjct: 414 TERDLKTDRT-----EKTLSIYPDDYLS--------DGFFIACLRKK 447


>gi|299768269|ref|YP_003730295.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1]
 gi|298698357|gb|ADI88922.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1]
          Length = 434

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 205/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +        
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALG 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  ++  +      + L 
Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTESLCQSLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +      L E          I  LPGF EG + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACTLSEAGIVLEQSVQITQLPGFEEGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
            V L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CVILLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDSNRLIRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SQTEILAADATQWVPAEPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +  GG +++  CS+ K ++E+ +           E+          I+    L 
Sbjct: 358 EHMWQQLNVGGTLLYITCSVLKAENEQQMINFFAEHSDAKEIK---------IEANWGLE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P             DGF+   ++++ 
Sbjct: 409 QIHGRQLLPQAQSG--------DGFYYCKIQKIA 434


>gi|311739502|ref|ZP_07713337.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305318|gb|EFQ81386.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 516

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 103/456 (22%), Positives = 162/456 (35%), Gaps = 37/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R V+  ++  V         +L         + L  RD      I   TLR L  +DA
Sbjct: 78  APRAVAFDVVRRVSDDDAFANLILPRALRK---QKLKGRDAAFATEITYGTLRTLGVVDA 134

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L     ++   LR+   Q+LY  V  +A VD  V   +            N
Sbjct: 135 VIAECSSRGLEAISPAVVDALRLGTYQVLYTRVEPHAAVDTTVRLVEA-AGEVKAKGFAN 193

Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            I+R +SR   +              IA     P W  E      G   + A   A    
Sbjct: 194 GIMRTISRTPAKTWLDKLAPQGEIACIAFKHAHPTWIAESFSRVLGLGELEAALAADSDR 253

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         L    +G+  VQD  + +
Sbjct: 254 PSVHLVARPGEISAEELALMTGNEEGCYSPYAVYMESGDPGQLEPVRQGLAAVQDEGSQL 313

Query: 233 PVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286
             +           +   LDLCA PGGK A +       +A  D  +    +       +
Sbjct: 314 IARAVCEAPLEGEDSGRWLDLCAGPGGKAALMGALARIDSAHVDAVEVSPHRAALIEKTV 373

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                D+   D  +    + FD VLVDAPCS  G +RR P+  W +   DI +    Q +
Sbjct: 374 SDLPVDVHVADGRNPGVGEGFDRVLVDAPCSGLGALRRRPEARWRKSEADIAELNQLQFE 433

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   ++ V+PGG+V++S CS D +++  +V + +R   +  E +  ++      D+   
Sbjct: 434 LLSSALNLVRPGGVVIYSTCSPDLRETRGIVDRAVRE--LGAEELDAHALIPDMGDVGH- 490

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              E  +++ P           G D  F  ALRR  
Sbjct: 491 ---EKSVQMWPH--------RHGTDAMFFAALRRAA 515


>gi|300858538|ref|YP_003783521.1| hypothetical protein cpfrc_01121 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685992|gb|ADK28914.1| hypothetical protein cpfrc_01121 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206250|gb|ADL10592.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
           pseudotuberculosis C231]
 gi|302330808|gb|ADL21002.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276492|gb|ADO26391.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
           pseudotuberculosis I19]
          Length = 504

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 153/453 (33%), Gaps = 37/453 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++ H+L  V  +      +L      +       RD      +   TLR L  +D +
Sbjct: 67  ARSLAFHVLHRVSSEDAFANLVLPKLLNKANVHG---RDAAFATELTYGTLRTLGVLDTL 123

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L       L      L   LR+   Q++Y+ V  +A VD  V   +    +       N 
Sbjct: 124 LAECSSRGLETIHPELLNALRLGAYQLMYMRVEPHAAVDTTVRIVEA-LGHDKAKGFANG 182

Query: 127 ILRRVSREKIELLQ----------RIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           ILR +SR                  IA  +  PEW         G   +     A     
Sbjct: 183 ILRTISRSTPAEWMERLAPQGEVANIAFRTAHPEWIAHSFSRVVGLSNLEDALRADSDRP 242

Query: 177 YIDLTVKFDIETWAHK---LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
            + L  +    +                   +         L    + +  VQD  + + 
Sbjct: 243 IVHLVARPGEISALELSLITGGEQGKYSPYAVYLGSGDPGELEPVQQQLAAVQDEGSQLI 302

Query: 234 VQLFGTL-----NNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH 287
            +          +    LDLCA PGGK A L        A  D  +    + R     + 
Sbjct: 303 ARALTEASVDGTDTGRWLDLCAGPGGKAALLGALARIDAAHVDAIEVSEHRARLIEKTVA 362

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +   D         +D VLVDAPCS  G +RR PD  W +   DI +    QR+L
Sbjct: 363 GLPVRVKIADGRRPGLDNGYDRVLVDAPCSGLGALRRRPDARWRKRESDIAELVPLQREL 422

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      V+PGG+VV+S CS D +++ E+V   L    + +      +   +  D     
Sbjct: 423 LASACELVRPGGVVVYSTCSPDLRETREIVDYALS--DLGMVEEDAATLVPEMSDTGEYK 480

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           S    +++ P           G D  F   L++
Sbjct: 481 S----VQMWPH--------QHGTDAMFFAVLKK 501


>gi|332873408|ref|ZP_08441362.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6014059]
 gi|332738471|gb|EGJ69344.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           baumannii 6014059]
          Length = 434

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +G E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETEDFEQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQVAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +            + E    I  LPGF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWTPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +           E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMTNFFTEHADAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIA 434


>gi|302023430|ref|ZP_07248641.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
           05HAS68]
          Length = 444

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 104/443 (23%), Positives = 188/443 (42%), Gaps = 25/443 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR ++  +L  V  +       L+     S    LS +D+ L   +V  T+    
Sbjct: 4   NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    +  LL +S+ Q++YLD    +AVV+ AV  AKR      F
Sbjct: 61  TLEWYLAHFIE-DREKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 119

Query: 121 AKLVNSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI--S 174
              +   L +       +     +R++    +P W  + L   YG ER   I  +    +
Sbjct: 120 VNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 179

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
              + +T    +E  A +L A       + L +          F +G+  +QD ++ +  
Sbjct: 180 KASVRVTDGQQVEQLAEELGAQHSQLSPVGLVKSHGHFAGTDYFKKGLITIQDETSQLVA 239

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
              G   +  +LD CAAPGGKT  +   ++  KV ALD+   +L  +  N  RL L  + 
Sbjct: 240 PTLGIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENARRLGLEDKI 299

Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             +        +      FD +LVDAPCS  G IRR PD+ + + + D       Q ++L
Sbjct: 300 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 359

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GGI+ +S C++  ++++EV+Q+ L++ P   ++   +            + 
Sbjct: 360 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMD 431
            +G + IT + + ++   S  +D
Sbjct: 412 VDGCLLITLNSIRQMAFSSVNLD 434


>gi|296117963|ref|ZP_06836546.1| sun protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295969194|gb|EFG82436.1| sun protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 426

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 155/442 (35%), Gaps = 37/442 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           +         +L      +    L  RD      +   TLR    +DA++       L  
Sbjct: 1   MHSDDAFANLILPKSLRANQ---LEGRDAAFATELAYGTLRAEGVLDAIIGEHSSRGLDT 57

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               +   LRV   Q++Y  V  +A VD  V   +    +      VN I+R ++R   E
Sbjct: 58  LAIEVLDALRVGTYQLMYTRVEPHAAVDTTVRLVQA-AGHEKAKGFVNGIMRSITRANPE 116

Query: 138 L----------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
                      ++ +A     P W          +E +    +       + L  +    
Sbjct: 117 TLLDKLTPAGEIEALAFRHAHPVWIARSFAQVVCQEELADALEGDSQRPVVHLVARPGEI 176

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--- 241
             E  A    +         +         L    +G+  VQD  + +  +         
Sbjct: 177 TAEELALMTGSDEGKYSPYAVYMDSGDPGDLEPVQQGLAAVQDEGSQLIARAVVEAPLEG 236

Query: 242 --NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
                 LDLCA PGGK A +        A+ D  +    + +     +     D+   D 
Sbjct: 237 EDQGRWLDLCAGPGGKAALMGSLARMDGAVVDAVEVSEHRAQLVKKTVGDLPVDVHVADG 296

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
            +   +  +D +LVDAPCS  G +RR P+  W +   DI + +  Q +LL   +S ++PG
Sbjct: 297 RNPGLEPGYDRILVDAPCSGLGALRRRPEARWRKSESDIAELSTLQFELLKSAVSLLRPG 356

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+S CS D +++  +V + L       EL  +       I     +     +++ P 
Sbjct: 357 GVIVYSTCSPDLRETRNIVDRALA------ELDVVEDNAHDLIPDMGDVGEHKSVQMWPH 410

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
                     G D  F   LR+
Sbjct: 411 --------RHGTDAMFFAVLRK 424


>gi|110832990|ref|YP_691849.1| tRNA and rRNA cytosine-C5-methylase [Alcanivorax borkumensis SK2]
 gi|110646101|emb|CAL15577.1| tRNA and rRNA cytosine-C5-methylase, putative [Alcanivorax
           borkumensis SK2]
          Length = 447

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 114/450 (25%), Positives = 193/450 (42%), Gaps = 42/450 (9%)

Query: 7   ARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            RL +   L+ V+       SL  +L           L   D   +R I     R L  +
Sbjct: 16  PRLSAVRALNRVLPGKGDGESLREVLRDF-------PLQGSDGGQMRDICFGVCRHLRPL 68

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +  L+  L   L      ++  L   + ++ + +   +A+V+   +  ++  +    A L
Sbjct: 69  NHWLNQQLSKPLKGSAQPVRLALLAGLYELWFSNRPAHAIVNAYPQLCRK-LKAPWAAGL 127

Query: 124 VNSILRRVSREKIELLQRIAGISI---IPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            N++LR+ S+  +E     A I+I   +P+W  +R E  +      A++ A +      L
Sbjct: 128 SNAVLRKASQITLEQAVADAPINIQLSLPDWLFKRWEKDWPNN-ADAMARANLQTPPFTL 186

Query: 181 TVKFDIETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
            V    +  A  + A                 +    ++ LPGF +G   VQD +A +P 
Sbjct: 187 RVNRQQQQRADAIAALGEGARAGYIAPYSIYLQPARPVLQLPGFEQGALSVQDEAAQLPA 246

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           +L        +LD CAAPGGKT Q       A ++AL++  +RL ++R NL RL      
Sbjct: 247 ELLQAPAKGRILDACAAPGGKTGQLREKFPAADLSALELEGKRLARIRENLARLGTDVTL 306

Query: 293 II--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +     D   +     FDA+L+DAPCS+TG +RR PDV W R   DI      Q ++L  
Sbjct: 307 LQGDASDPKTWWDGTPFDAILLDAPCSATGILRRQPDVKWHRKASDIGVLVDLQARMLDA 366

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +KPGG++V++ CS+ + +++  V+  L+  P   ++ P              +   
Sbjct: 367 LWPLLKPGGMLVYATCSVLRDENDHQVRNFLQRQPQARDVTP--------RPEGATMVDA 418

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           GW ++ P           G DGF+   LR+
Sbjct: 419 GW-QLFP--------EQHGPDGFYLACLRK 439


>gi|296386489|ref|ZP_06875988.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
           aeruginosa PAb1]
          Length = 434

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +   L+ V+  R SL+  L           ++ RD+ L + +     R+ PR+ 
Sbjct: 1   MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL + + Q+LY  +  +A +   V  A + K+      ++
Sbjct: 56  ALAARLLQKPFKAVDTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      E+ +  +     P W  + L+  +  E++  +  A  +   + L
Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDTLCAANNAHPPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            V     + + +  +L    +                P  +  LPGFAEG   VQD +A 
Sbjct: 174 RVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288
           +  +L  +     VLD C APGGKT  L+ +     +V A+D+ + RL ++R NL RL L
Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A           ++   K F  +L+DAPCS+TG IRRHPD+   R  +DI   A  Q +
Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG+++++ CS+   ++ + +   L  +P   EL          +     
Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      ++ P +         G DGF+   L ++
Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431


>gi|237742476|ref|ZP_04572957.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
 gi|294785012|ref|ZP_06750300.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_27]
 gi|229430124|gb|EEO40336.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
 gi|294486726|gb|EFG34088.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_27]
          Length = 435

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 102/452 (22%), Positives = 194/452 (42%), Gaps = 37/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN + V+ +L+S V  K       L+  +       ++ +++  +  I    +R    +D
Sbjct: 1   MNVKQVAINLISQVD-KGAYSNIALNETFK---TLNINSKEKAFITEIFYGVIRNKKFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ QI ++D  +  VV  A E AK+       +K +
Sbjct: 57  YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDNKGVVWEATELAKKKYG-VPISKFI 112

Query: 125 NSILRRVSREKIE------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K          +    +  IP+WF + LE  YG E +     +     Y+
Sbjct: 113 NGTLRNYLRNKDSELKSLADEKNYEVLYSIPKWFCDMLEKQYGNENLKQAITSLKKIPYL 172

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
            + V     T       +      I              I++   F  G    QDAS+ +
Sbjct: 173 SVRVNKLKYTEKEFEEFLKEKDIQIIKKIDTVYYINSGLIINSEEFKTGKIIAQDASSYL 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +  G + N  VLD+CAAPGGKT    + + +  ++ A+D+ + +++ +  N+ +L + 
Sbjct: 233 AAKNLGVMPNELVLDICAAPGGKTAVLTENMENRGEIIAIDIHQHKIKLIETNMKKLGID 292

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I MD        + FD +LVD PCS  G IR+ P++L++++ ++I + A  Q ++L
Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++S C++  +++   ++K L+               +   +++    
Sbjct: 353 NSAADILKDGGELIYSTCTITDEENTNNIEKFLKEREEFKV-----EKLYILENVSGDYD 407

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G           I+     MD F+ + L +
Sbjct: 408 KLGGF--------CINYKEEIMDNFYIIKLVK 431


>gi|257080479|ref|ZP_05574840.1| ribosomal RNA small subunit methyltransferase [Enterococcus
           faecalis E1Sol]
 gi|256988509|gb|EEU75811.1| ribosomal RNA small subunit methyltransferase [Enterococcus
           faecalis E1Sol]
          Length = 459

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKIDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|62390481|ref|YP_225883.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325818|emb|CAF21607.1| PUTATIVE 16S RRNA M(5)C 967 METHYLTRANSFERASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 511

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 161/455 (35%), Gaps = 37/455 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L  V         +L           LS RD      I   TLR +  +D 
Sbjct: 75  KPREIAFEVLDRVRTGEAYANLVLPRLLSKH---NLSGRDAAFATEITYGTLRNVGLLDE 131

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L      +  +LR+   Q+++  V D+A VD +V+     K+ +      N
Sbjct: 132 VIKAASGRELSDIDPEVLDVLRLGAYQVMFTRVEDHAAVDTSVKMVGGLKKFQ-ATGFAN 190

Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +ILR ++R++ E             R+A  +  P W  +        + + A   A    
Sbjct: 191 AILRNITRKEPEQWLKELEPAEELARVAFRTAHPRWIAQSFSQVLPADELEAALAADSER 250

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         +    +G+  VQD  + +
Sbjct: 251 PVVHLVARPGEISAEELALITGGDEGKYSPYAVYLEGGDPGDIEPVKDGLAAVQDEGSQL 310

Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286
             +    +          LD+CA PGGK A +        A  D  +    + R     +
Sbjct: 311 IARALVEIPVEGTDAGRWLDMCAGPGGKAALIGALARMDRATVDAVEVSDHRARLIEKSV 370

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +   D         +D  LVDAPCS  G +RR P+  W +   DIV+    Q +
Sbjct: 371 RGLPVKVHVGDGRTINLTGGYDRALVDAPCSGLGALRRRPEARWRKQESDIVELNTLQYE 430

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   ++ V+ GG++V+S CS D +++  +V K L        L        + +     
Sbjct: 431 LLESAVNKVRSGGVIVYSTCSPDLRETRGIVDKALG------ALEIEELEAAEFMPGMTD 484

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              E  +++ P           G D  F   LR+ 
Sbjct: 485 TGDEKSVQMWPH--------RHGTDAMFVAVLRKK 511


>gi|145295720|ref|YP_001138541.1| hypothetical protein cgR_1647 [Corynebacterium glutamicum R]
 gi|140845640|dbj|BAF54639.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 503

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 161/455 (35%), Gaps = 37/455 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L  V         +L           LS RD      I   TLR +  +D 
Sbjct: 67  KPREIAFEVLDRVRTGEAYANLVLPRLLSKH---NLSGRDAAFATEITYGTLRNVGLLDE 123

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L      +  +LR+   Q+++  V D+A VD +V+     K+ +      N
Sbjct: 124 VIKAASGRELSDIDPEVLDVLRLGAYQVMFTRVEDHAAVDTSVKMVGGLKKFQ-ATGFAN 182

Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +ILR ++R++ E             R+A  +  P W  +        + + A   A    
Sbjct: 183 AILRNITRKEPEQWLKELEPTEELARVAFRTAHPRWIAQSFSQVLPADELEAALAADSER 242

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         +    +G+  VQD  + +
Sbjct: 243 PVVHLVARPGEISAEELALITGGDEGKYSPYAVYLEGGDPGDIEPVKDGLAAVQDEGSQL 302

Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286
             +    +          LD+CA PGGK A +        A  D  +    + R     +
Sbjct: 303 IARALVEIPVEGTDAGRWLDMCAGPGGKAALIGALARMDRATVDAVEVSDHRARLIEKSV 362

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +   D         +D  LVDAPCS  G +RR P+  W +   DIV+    Q +
Sbjct: 363 RGLPVKVHVGDGRTINLTGGYDRALVDAPCSGLGALRRRPEARWRKQESDIVELNTLQYE 422

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   ++ V+ GG++V+S CS D +++  +V K L        L        + +     
Sbjct: 423 LLESAVNKVRSGGVIVYSTCSPDLRETRGIVDKALG------ALEIEELEAAEFMPGMTD 476

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              E  +++ P           G D  F   LR+ 
Sbjct: 477 TGDEKSVQMWPH--------RHGTDAMFVAVLRKK 503


>gi|23308856|ref|NP_600813.2| tRNA and rRNA cytosine-C5-methylase [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324368|dbj|BAB98992.1| tRNA and rRNA cytosine-C5-methylases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 444

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 161/455 (35%), Gaps = 37/455 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L  V         +L           LS RD      I   TLR +  +D 
Sbjct: 8   KPREIAFEVLDRVRTGEAYANLVLPRLLSKH---NLSGRDAAFATEITYGTLRNVGLLDE 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L      +  +LR+   Q+++  V D+A VD +V+     K+ +      N
Sbjct: 65  VIKAASGRELSDIDPEVLDVLRLGAYQVMFTRVEDHAAVDTSVKMVGGLKKFQ-ATGFAN 123

Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +ILR ++R++ E             R+A  +  P W  +        + + A   A    
Sbjct: 124 AILRNITRKEPEQWLKELEPAEELARVAFRTAHPRWIAQSFSQVLPADELEAALAADSER 183

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         +    +G+  VQD  + +
Sbjct: 184 PVVHLVARPGEISAEELALITGGDEGKYSPYAVYLEGGDPGDIEPVKDGLAAVQDEGSQL 243

Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286
             +    +          LD+CA PGGK A +        A  D  +    + R     +
Sbjct: 244 IARALVEIPVEGTDAGRWLDMCAGPGGKAALIGALARMDRATVDAVEVSDHRARLIEKSV 303

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +   D         +D  LVDAPCS  G +RR P+  W +   DIV+    Q +
Sbjct: 304 RGLPVKVHVGDGRTINLTGGYDRALVDAPCSGLGALRRRPEARWRKQESDIVELNTLQYE 363

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   ++ V+ GG++V+S CS D +++  +V K L        L        + +     
Sbjct: 364 LLESAVNKVRSGGVIVYSTCSPDLRETRGIVDKALG------ALEIEELEAAEFMPGMTD 417

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              E  +++ P           G D  F   LR+ 
Sbjct: 418 TGDEKSVQMWPH--------RHGTDAMFVAVLRKK 444


>gi|307276657|ref|ZP_07557775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX2134]
 gi|306506767|gb|EFM75919.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX2134]
          Length = 459

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILENVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724]
 gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724]
          Length = 430

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/450 (20%), Positives = 172/450 (38%), Gaps = 39/450 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  RL ++ +L  + R+   L  LL        F  LS +++  +  +V    R+   +D
Sbjct: 1   MEVRLRAAEILYDLERREAYLNILLRNRL---PFYDLSLKEKHFITELVYGVTRWKITLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRD-KENRHFAK 122
            +    +           + LLR+ V  + +L D      V+  VE AK+   +      
Sbjct: 58  YIWSRFVRR--DNLSLFSKVLLRLVVYHVYFLKDTILPVAVNEIVEIAKKKVPKEAKLIN 115

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            V+  + R           +     +P++  E   ++ G+   +           + + V
Sbjct: 116 AVSRNIIREKNNLNLNSIPLHIRYGVPDFILEEWFDYIGRGEAVKALSWLNRSHNVSIRV 175

Query: 183 KF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDASASIP 233
                  +    KL    +      L +                F EG + +Q  ++ +P
Sbjct: 176 NTLKISKKDLKEKLLERRIKFKDGNLVDQALIIEDGFDFERSDLFNEGYFVIQSEASMLP 235

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             +        V+DLC+APG K+  L   + +  K+ ++D++K RL  +  N  RL +  
Sbjct: 236 ALILNPKPGNRVIDLCSAPGLKSTHLAELMKNQGKIISVDINKNRLRLVEENAKRLGISI 295

Query: 291 EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +    D  +      + FD VL+DAPCS  G I   P++ W    DDI   +  Q K+L
Sbjct: 296 IETFSQDVLNLPSSLDRSFDRVLLDAPCSGLGVISHKPEIKWRLKRDDIYNLSEMQVKML 355

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    +K  G +V+S C++   ++E V+ + L+ +P   +LV                 
Sbjct: 356 ERAGKLLKREGRMVYSTCTITWHENESVLLQFLQRNP-EFKLVNFKYKGELFP------- 407

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             G +++ P             DGFF   +
Sbjct: 408 --GIMKVLPHKY--------NTDGFFIALI 427


>gi|78186474|ref|YP_374517.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
           273]
 gi|78166376|gb|ABB23474.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
           273]
          Length = 442

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 106/456 (23%), Positives = 194/456 (42%), Gaps = 33/456 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   AR ++ ++L  +         LL      S    L   D+ L  A+ +  LR  
Sbjct: 1   MTS---ARELAFNILQQLEAGTRHSDSLLHELLEAS---SLKGPDRALATALTSGVLRQR 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D ++       + +   ++  +LR+ V Q+L+LD V  +A V+  V  A+R K  R 
Sbjct: 55  LQLDFIIAKFYSHDIQKASPAVLNILRLGVWQLLFLDRVPRWAAVNECVRLARRYKGER- 113

Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170
            +KL N++LR++S E + L   +         + +   PE    R    YG++R  ++  
Sbjct: 114 MSKLTNAVLRKISPETVHLDLWLKDASLSERLSVLHSHPEPLVRRWIGNYGEQRTESMLR 173

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL---PGFAEGVWWVQD 227
                    +       T A              +  +  +       P   +G+  VQ+
Sbjct: 174 YDNEHPLFGIRHNPLKGTNAKGAEGEESGWQESGIPGIRLAADFHLFEPLLRQGLASVQN 233

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            + ++ V L     +  VLDLCAAPGGK A     + +  ++ ALD   ++  +++   D
Sbjct: 234 PTQALAVLLLDPQPDWKVLDLCAAPGGKAAHAAELMGNRGEIIALDRYPQKTLRIQALAD 293

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            L +   +    DA ++ P    DA+LVDAPC+ TG + R  ++ W    + + + +  Q
Sbjct: 294 TLGISIIEARTGDAREFTPPFQPDAILVDAPCTGTGVLGRRAELRWKTGPEKLRELSGLQ 353

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      +  GG++++S CS++ ++++  V+  L+  P                   
Sbjct: 354 EEILRHAAGLLAEGGLLLYSTCSVEPEENQLQVEAFLQQHPAFRIEQATGKV---PEPFC 410

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  +PEG I   P           G DG +AV LR+
Sbjct: 411 LERTPEGGILTLPG-------ARPGFDGGYAVLLRK 439


>gi|237738183|ref|ZP_04568664.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC
           9817]
 gi|229420063|gb|EEO35110.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC
           9817]
          Length = 433

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/454 (23%), Positives = 201/454 (44%), Gaps = 41/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN +     L+  V          L+  + ++    LS++++  +  +    +R    +D
Sbjct: 1   MNIKARVISLIKEVE-NGKFSNIALNEYFKEN---NLSKKERGFITELFYGVIRNKIFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +D     +   KK  ++ +LR+S+ QI +++  D  V+  A E AK+ K +    K +
Sbjct: 57  YEID---KRTTTIKKDWIRNILRISMYQISFMNSDDKGVIWEATELAKK-KFSVPVGKFI 112

Query: 125 NSILRRVSREKIELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N +LR   RE  E ++      +       PEWF  +L + YG+E       +     YI
Sbjct: 113 NGVLRSYQREWQEDVKELKESGKNYIYLSYPEWFYNKLVSEYGEEEGELFLQSLKKIPYI 172

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS--------LPGFAEGVWWVQDASA 230
              V  +   ++ +    +L    I + +  +S+             F +G   VQDAS+
Sbjct: 173 SFRV--NRLKYSCEEFEKLLEEKKIDIIKKVDSVYYVDSGILLYSDEFRDGKIIVQDASS 230

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  +      + SVLD C+APGGKTA   +L+ +  ++ ALD+   +L+ +  N  +  
Sbjct: 231 YLSARNLNPKPDESVLDTCSAPGGKTAVLGELMENRGELLALDIYPHKLKLIEENCHKCG 290

Query: 288 LYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +     ++MDA       K FD +LVDAPCS  G +R+ P+ ++ ++++++ + A  Q +
Sbjct: 291 VDIVRTVKMDARKLKEQGKKFDKILVDAPCSGYGVLRKKPEAIYNKNSENVEELAKLQFE 350

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      +K  G +V+S C++ K+++ E ++K L   P    +              + 
Sbjct: 351 ILESASQVLKDNGELVYSTCTILKEENGENIKKFLEKYPNFETVELYIPENVNGSYDNVG 410

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           +D     +DGF+ V L++
Sbjct: 411 -------------GFTVDYKEDILDGFYIVKLKK 431


>gi|308177752|ref|YP_003917158.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745215|emb|CBT76187.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 507

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 177/473 (37%), Gaps = 48/473 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLV+   L  V         +L     +     L +RD      +    LR     DA
Sbjct: 47  PARLVAFRTLREVSGSDAYANLVLPKMIREYQ---LDRRDAGFATELAYGALRGQGFYDA 103

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L  ++   L     ++   LR+   Q+L + V  +A +D  V  A+        + L+N
Sbjct: 104 ILATLVDRDLSELDPAILDALRLGAHQLLAMRVPKHAALDETVSLARAQIG-AGPSGLIN 162

Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE-----RVLAI 168
           ++LRRVS ++ +                 +     P+W    L             + A+
Sbjct: 163 AVLRRVSGQEADQWTEQLGSAASSESERLSIEHSHPDWIVRALRGALITHGRDASELEAL 222

Query: 169 SDACISPLYIDLTVKFDIETWAHKLN--AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            +A      ++L     +   A  L   A                +  +PG  EG   VQ
Sbjct: 223 LEADNLAPLVNLVSLPGLGDLAGALESGAEPGTLLSDSATYKHGDVARVPGVKEGTVRVQ 282

Query: 227 DASASIPVQL------FGTLNNLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRL 276
           DA + +  +            +   LD+CA PGGK     A  +   A++TA + ++ R 
Sbjct: 283 DAGSQVMARALANIELPEAGEDRYWLDMCAGPGGKAALLGAIAVQRDARLTANEPTEHRA 342

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRD 333
             +  +LD +      +   D   +  +     +D ++VDAPCS  G +RR P+  W + 
Sbjct: 343 RLVENSLDAVPHDYWMVTTEDGRSFAGEDFAGDYDRIMVDAPCSGLGALRRRPESRWRKA 402

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV-- 391
             DI +    Q +LL    + V+ GG++ F  CS  + ++  VV+  L+       L   
Sbjct: 403 PRDIPELTSLQGELLDAAFNAVRVGGVIGFVTCSPHQAETRLVVEDFLKRHENAALLDTS 462

Query: 392 -PLNSAYWKSIDMAMALSPEGWI-RITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             ++S  +++   A     +G   ++ P +         G D  F   L +  
Sbjct: 463 AAVSSVMYENAPPAGHDLGDGTTAQLWPHV--------HGTDAMFMAILTKKA 507


>gi|253582362|ref|ZP_04859585.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835901|gb|EES64439.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 432

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 192/453 (42%), Gaps = 38/453 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN +  +  L+  V          L+  + ++    L+++++  +  +    +R    +D
Sbjct: 1   MNVKQRAIGLIQEVE-NGKYSNIALNEYFKENI---LNRKERGFITELFYGVIRKKIFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             ++  +      KK  ++ LLR+S+ QI ++   +  VV  A E AK+        K V
Sbjct: 57  YEINKRVS---SIKKDWIRNLLRISIYQITFMKSDNKGVVWEASELAKKKFG-VPVGKFV 112

Query: 125 NSILRRVSREKIELL------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N +LR   RE    +       ++  +   P WF E+++  YG E      ++     YI
Sbjct: 113 NGVLRGYLREMDNDIKELRETDKLDILLSYPRWFYEKIKEEYG-ENAELFLESLKKIPYI 171

Query: 179 DLTVKF------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
              V        + E      +  ++             ++    F +G   VQDAS+ +
Sbjct: 172 SFRVNTLKYSEKEFEKLLLDKDIEIIKKVDTVYYLDSGILLYSNEFKDGKIIVQDASSYL 231

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +         VLD C+APGGKTA   +L+ +  ++ ALD+   +L+ +  N  +L + 
Sbjct: 232 SAKNLNPNEQDLVLDTCSAPGGKTAVLGELMGNKGEILALDIYPHKLKLIEENCKKLGID 291

Query: 290 AEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I+MDA       K FD +LVDAPCS  G +R+ P+ ++ +  ++I   +  Q ++L
Sbjct: 292 IVKPIKMDARKLNQQGKKFDKILVDAPCSGYGVLRKKPEAIYNKTPENIELLSELQFEIL 351

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K  G +V+S C++ K+++ E +++ L   P         +  +   ++     
Sbjct: 352 ESASQVLKDDGELVYSTCTILKEENTENIKRFLEKYPEF-----ETAEVYIPENVKGTYD 406

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             G   I        D     +DGF+   +R+ 
Sbjct: 407 EAGGFTI--------DYNEDILDGFYIAKIRKK 431


>gi|256960468|ref|ZP_05564639.1| fmu [Enterococcus faecalis Merz96]
 gi|293385126|ref|ZP_06630952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis R712]
 gi|293389099|ref|ZP_06633571.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis S613]
 gi|312906690|ref|ZP_07765690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis DAPTO 512]
 gi|312910848|ref|ZP_07769684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis DAPTO 516]
 gi|256950964|gb|EEU67596.1| fmu [Enterococcus faecalis Merz96]
 gi|291077603|gb|EFE14967.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis R712]
 gi|291081567|gb|EFE18530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis S613]
 gi|310627338|gb|EFQ10621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis DAPTO 512]
 gi|311288871|gb|EFQ67427.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis DAPTO 516]
          Length = 459

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/469 (24%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     R    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|254435259|ref|ZP_05048766.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
           oceani AFC27]
 gi|207088370|gb|EDZ65642.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
           oceani AFC27]
          Length = 435

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 204/458 (44%), Gaps = 42/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R++++ +L  V+ +  SLT +L       A   L  RDQ   + +    LR+L
Sbjct: 1   MTKSANTRIIATSVLVRVLGQGRSLTAVLP-----PAMAHLPARDQAFTQTLCYGVLRWL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR+D +   +L   L  +   L  LL + + Q+  L +  +A +   V  A+        
Sbjct: 56  PRLDYLAQKILHKPLRARDRDLYALLLLGLYQLTELGIPSHAALSETVNAAES-LGKPWA 114

Query: 121 AKLVNSILR----RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            K++N+ LR      +  + ++       +  P+W  + + N +       I+ A  S  
Sbjct: 115 KKMLNATLRAYLRNETALQTQVTAHETAHTAHPQWLLDAIRNSWPDHWPQIIT-ANNSHP 173

Query: 177 YIDLTV---KFDIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
            + L +   + + + +  +L         +  T    + E P  + +LPGF +G   VQD
Sbjct: 174 PLSLRINRLQNNRKNYLQELKRNDIKAWPIPHTESGVILEQPCQVATLPGFLKGQVSVQD 233

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLD 284
            +      L        VLD CAAPGGKT+ ++    ++    ALD+   RLE+L  NL 
Sbjct: 234 GAGQRAAPLLALTPGQRVLDACAAPGGKTSHILELEPQLETLIALDLDATRLERLNSNLK 293

Query: 285 RLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L AE I    +    +     FD +L+DAPCS +G IRRHPD+   R   DI+  A 
Sbjct: 294 RLQLKAEVIQGNALQPDTWWDGIPFDRILLDAPCSGSGVIRRHPDIKALRRESDILPLAT 353

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q++LL      + PGG++++  CS+   ++E+ +++ L + P   E         + +D
Sbjct: 354 LQKRLLSALWPLLAPGGMLLYCTCSILPIENEQQIREFLLTHPDGQE---------RPLD 404

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   L      ++   M E        +DGF+   L +
Sbjct: 405 VPWGLLQTAGRQLLTGMEE--------LDGFYYACLEK 434


>gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
           thiooxidans DMS010]
 gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
           thiooxydans DMS010]
          Length = 406

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/419 (24%), Positives = 184/419 (43%), Gaps = 34/419 (8%)

Query: 38  FRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD 97
              L+  ++   + +    LR  P +  + + +L      K   +  L    + Q+  L 
Sbjct: 5   LPQLNDNERSFYQQLCYGVLRLHPTLIFLGNQLLKKPFKNKDADIAALFLTGLYQLRDLR 64

Query: 98  VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI----IPEWFK 153
              +A +   V  AK+    +    L+N+ LR   R+  EL  ++    +     PEW  
Sbjct: 65  TPSHAAISETVNAAKK-LGKQWATGLLNACLRNYQRQHTELEAQLQHNPVAGTAHPEWLL 123

Query: 154 ERLENFYG-KERVLAISDACISPLYIDLT-VKFDIETWAHKLNA------VMLPTGGIRL 205
           ++ ++ +    + +  ++   +P+ + +   +   ET+  +L         +       L
Sbjct: 124 QQYQSDWPDHWQQITQANNQQAPMMLRVNRQQASRETYLQQLLQQDIGATALRDCDDGVL 183

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSG 263
                 + +LP F  G+  VQD +A + V++     +  +LD CAAPGGK+         
Sbjct: 184 LSKAYDVNALPNFETGMASVQDGAAQLVVKMLDIQPDQHILDACAAPGGKSCHILEQHPD 243

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
             + ALD+S  RL+++  NL RL L A  +     D   +   +LFD +L+DAPCS +G 
Sbjct: 244 NTLVALDISAERLKQIEQNLSRLQLGAQLKAADASDTDAWWDGELFDRILIDAPCSGSGV 303

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           IRRHPD+   R  +DI   A  Q++LL +    +K  G++V++ CS  K+++E+ ++  L
Sbjct: 304 IRRHPDIKLLRRPEDITSLAHTQQQLLDKLWPLLKADGLMVYTTCSAFKKENEQQIEAFL 363

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  P   EL        +         P G+ R+              MDGF+   LRR
Sbjct: 364 QRHPDAKEL--------RFEQAPATARPYGYQRL---------PGDDVMDGFYYACLRR 405


>gi|254237740|ref|ZP_04931063.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169671|gb|EAZ55182.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 434

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +   L+ V+  R SL+  L           ++ RD+ L + +     R+ PR+ 
Sbjct: 1   MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL + + Q+LY  +  +A +   V  A + K+      ++
Sbjct: 56  ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      E+ +  +     P W  + L+  +  E++ A+  A  +   + L
Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            V     + + +  +L    +                P  +  LPGFAEG   VQD +A 
Sbjct: 174 RVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288
           +  +   +     VLD C APGGKT  L+ +     +V A+D+ + RL ++R NL RL L
Sbjct: 234 LAAEQLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A           ++   K F  +L+DAPCS+TG IRRHPD+   R  +DI   A  Q +
Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG+++++ CS+   ++ + +   L  +P   EL          +     
Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      ++ P +         G DGF+   L ++
Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431


>gi|49088860|gb|AAT51614.1| PA0017 [synthetic construct]
          Length = 435

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +   L+ V+  R SL+  L           ++ RD+ L + +     R+ PR+ 
Sbjct: 1   MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL + + Q+LY  +  +A +   V  A + K+      ++
Sbjct: 56  ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      E+ +  +     P W  + L+  +  E++ A+  A  +   + L
Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            V     + + +  +L    +                P  +  LPGFAEG   VQD +A 
Sbjct: 174 RVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +  +   +     VLD C APGGKT  L+ +  +   V A+D+ + RL ++R NL RL L
Sbjct: 234 LAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A           ++   K F  +L+DAPCS+TG IRRHPD+   R  +DI   A  Q +
Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG+++++ CS+   ++ + +   L  +P   EL          +     
Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      ++ P +         G DGF+   L ++
Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431


>gi|153003322|ref|YP_001377647.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5]
 gi|152026895|gb|ABS24663.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5]
          Length = 439

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/459 (24%), Positives = 174/459 (37%), Gaps = 45/459 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+AR ++  +L  V       +  LD     +    L  R+  L   +V  TLR    +D
Sbjct: 1   MSARQIAFEVLRRVDEGGAYASRALDAALTGAG--ALDPREAGLATELVYGTLRRSLTLD 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A L       +       +  LR+   Q+L++    +A V   V   K     R  A  V
Sbjct: 59  AALAPHSRRPVGALDPPARVALRLGAYQLLFMGKPPHAAVGETVSLVKAVDHGR-AAGYV 117

Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           N++LR ++R                 +A    +P W  E    + G    LA++     P
Sbjct: 118 NAVLRALARAPALPEPPPLSVDPAGHVALAEALPRWLAEEWVEWLGPAEALALARGMNQP 177

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV------WWVQDAS 229
             + +      +    +  +  L     R       +      A         + VQD +
Sbjct: 178 APLTVR-SPARDALVERARSAGLAAEPTRRSPDGVLLAGASVAALARAAGGLPFQVQDEA 236

Query: 230 ASIPVQLFG---TLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNL 283
           A +               VLD CAAPGGK   L      G++V A+++  R+ E+L    
Sbjct: 237 AQLVTLYAAGGLRGTRARVLDACAAPGGKAFHLAEQLAPGSEVVAVELHPRKAEELAREA 296

Query: 284 DRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            R  L    ++  DA    P      FDAVLVDAPC+  GT+RRHP++   R  +D+ + 
Sbjct: 297 ARRGLAGVRVVCADAARPIPGLEAGSFDAVLVDAPCAGLGTLRRHPELKLRRVPEDLARM 356

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q  +L     + +PG  + +S CSL + +   VV+  LRS           +     
Sbjct: 357 AVLQADVLAGVARYARPGAPITYSICSLSRVEGPRVVEAALRS---------GLARAGGG 407

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
              +  L+ EG +   P           G DGF+A  L 
Sbjct: 408 AVPSDVLTAEGDLLTLPH--------RHGTDGFYAARLV 438


>gi|325924335|ref|ZP_08185879.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
           gardneri ATCC 19865]
 gi|325545200|gb|EGD16510.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
           gardneri ATCC 19865]
          Length = 436

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 127/453 (28%), Positives = 206/453 (45%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L       +      RD+ LV AI    LR  P
Sbjct: 7   TAGVASRLAAARVLTAVFDQGRSLKAELAASLPGLS----DPRDRALVEAICFAVLRRRP 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D  L   L   LP +   L+ LL    AQ+  L +  +A +   V+  +     R  A
Sbjct: 63  AYDVALRQWLERPLPPRDAELKALLMAGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   AG    P W +++L   +  +   + ++ A ++P+++ +
Sbjct: 122 GMVNAILRRAQREGFPAVSADAGW---PSWLRKQLRADWGDRAETIFVASALMAPMWLRV 178

Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D   +  +L  + +      +        +   +  LPGFAEG   VQD SA   
Sbjct: 179 HRGRTDPAAYVARLAELGIAAETDPVLPDAVRLHIALPVSQLPGFAEGEVSVQDGSAQQV 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  ++  VLD CAAPGGK A       G ++TALDV  RRLE+++  L R    A+
Sbjct: 239 ADALPLASSARVLDACAAPGGKAAHLLERYPGLQLTALDVDARRLERVQQTLQRTVPGAQ 298

Query: 292 DIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             ++     D   +  ++ FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 299 VALQAADAADPAGWWDEQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDAVCALQARL 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V+  L+ +P   +  PL + +  +       
Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQQTP-DAQAQPLGAQFGHAAGPG--- 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +        DGFF   L +
Sbjct: 415 -------------RQRFPGEQHCDGFFYALLLK 434


>gi|29377578|ref|NP_816732.1| Sun protein [Enterococcus faecalis V583]
 gi|227554542|ref|ZP_03984589.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|257417966|ref|ZP_05594960.1| SUN protein [Enterococcus faecalis T11]
 gi|29345045|gb|AAO82802.1| Sun protein [Enterococcus faecalis V583]
 gi|227176340|gb|EEI57312.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|257159794|gb|EEU89754.1| SUN protein [Enterococcus faecalis T11]
 gi|315573270|gb|EFU85461.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0309B]
 gi|315581156|gb|EFU93347.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0309A]
          Length = 459

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPSMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|227517271|ref|ZP_03947320.1| RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|229548022|ref|ZP_04436747.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255970686|ref|ZP_05421272.1| sun protein [Enterococcus faecalis T1]
 gi|255974266|ref|ZP_05424852.1| sun protein [Enterococcus faecalis T2]
 gi|256618123|ref|ZP_05474969.1| fmu family protein [Enterococcus faecalis ATCC 4200]
 gi|256761053|ref|ZP_05501633.1| sun protein [Enterococcus faecalis T3]
 gi|256854793|ref|ZP_05560157.1| sun protein [Enterococcus faecalis T8]
 gi|256962961|ref|ZP_05567132.1| fmu [Enterococcus faecalis HIP11704]
 gi|257083204|ref|ZP_05577565.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257088233|ref|ZP_05582594.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257091364|ref|ZP_05585725.1| SUN protein [Enterococcus faecalis CH188]
 gi|307273621|ref|ZP_07554849.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0855]
 gi|307284853|ref|ZP_07565009.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0860]
 gi|307288887|ref|ZP_07568860.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0109]
 gi|312902128|ref|ZP_07761388.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0470]
 gi|312905428|ref|ZP_07764542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0635]
 gi|312953217|ref|ZP_07772063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0102]
 gi|227075278|gb|EEI13241.1| RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|229306898|gb|EEN72894.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255961704|gb|EET94180.1| sun protein [Enterococcus faecalis T1]
 gi|255967138|gb|EET97760.1| sun protein [Enterococcus faecalis T2]
 gi|256597650|gb|EEU16826.1| fmu family protein [Enterococcus faecalis ATCC 4200]
 gi|256682304|gb|EEU21999.1| sun protein [Enterococcus faecalis T3]
 gi|256710353|gb|EEU25397.1| sun protein [Enterococcus faecalis T8]
 gi|256953457|gb|EEU70089.1| fmu [Enterococcus faecalis HIP11704]
 gi|256991234|gb|EEU78536.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256996263|gb|EEU83565.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257000176|gb|EEU86696.1| SUN protein [Enterococcus faecalis CH188]
 gi|306500159|gb|EFM69503.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0109]
 gi|306503112|gb|EFM72369.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0860]
 gi|306509634|gb|EFM78676.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0855]
 gi|310628834|gb|EFQ12117.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0102]
 gi|310631157|gb|EFQ14440.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0635]
 gi|311290792|gb|EFQ69348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0470]
 gi|315026431|gb|EFT38363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX2137]
 gi|315028355|gb|EFT40287.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX4000]
 gi|315031807|gb|EFT43739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0017]
 gi|315150899|gb|EFT94915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0012]
 gi|315152786|gb|EFT96802.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0031]
 gi|315159379|gb|EFU03396.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0312]
 gi|315161202|gb|EFU05219.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0645]
 gi|315164414|gb|EFU08431.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX1302]
 gi|315167222|gb|EFU11239.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX1341]
 gi|315171200|gb|EFU15217.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX1342]
 gi|315577118|gb|EFU89309.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0630]
 gi|323479050|gb|ADX78489.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis 62]
 gi|327536239|gb|AEA95073.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis OG1RF]
          Length = 459

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|169634914|ref|YP_001708650.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii SDF]
 gi|169153706|emb|CAP02904.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii]
          Length = 434

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/454 (25%), Positives = 206/454 (45%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  N R      L  V ++  SL  +L+ +        +++RD+ L   +V  TLR   
Sbjct: 8   SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L V + Q+L   +A +A +   V+ A +       +
Sbjct: 62  ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE  +  Q +     +P W  +RL+  +  E+  A+  +      + L 
Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWE-EQTEALCQSLKQAAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V       + +  KL ++ +            + E    I  L GF +G + VQD  A +
Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAGIVLEQSVQITQLLGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
              L   LNN +V+D CAAPGGKTA        A++ A+D    RL ++  NL+RL L  
Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  + P +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++  CS+ K ++E+ +       P   E+          I+    + 
Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P+            DGF+   ++++ 
Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434


>gi|326329761|ref|ZP_08196082.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae
           bacterium Broad-1]
 gi|325952526|gb|EGD44545.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae
           bacterium Broad-1]
          Length = 489

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 117/473 (24%), Positives = 180/473 (38%), Gaps = 50/473 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    ARL +  +L  V         +L    G      L  RD      + + TLR   
Sbjct: 30  KPADPARLAAFEVLKAVRVDEAYANLVLPHVLGR---LGLEGRDAAFATELASGTLRQQG 86

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             DAVL   +   L + +  +  +LR+   Q+L + V D+A +  +V+ A+     +  A
Sbjct: 87  TYDAVLAACIDRPLAKVEAKVLDVLRLGAHQVLSMRVPDHAAISTSVDLARSKVG-QGPA 145

Query: 122 KLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAI 168
             VN++LR+V+R  +E                        P W  E+L    G++++ A+
Sbjct: 146 GFVNAVLRKVTRITLEEWVAEVAPAREKDHDGWATVAFSHPRWVVEQLAEAVGRDQIDAL 205

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
            +A   P  + L  +    T   +L           +     S   +   AEG   VQD 
Sbjct: 206 LEADNVPPSVTLVARPGRATV-DELGGTPTSYSPFGVTLDSGSPAGIEAVAEGRAGVQDE 264

Query: 229 SASIPVQLFGTLNNLS-----------VLDLCAAPGGKT----AQLIVSGAKVTALDVSK 273
            + +                        LDLCA PGGK+    A     GA + A +   
Sbjct: 265 GSQLVAIALAEAAVERDDEPGEDRAGSWLDLCAGPGGKSALLAALAAQQGATLVANERQP 324

Query: 274 RR----LEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPD 327
            R    L  L       H+     +        P     FD +LVDAPC+  G +RR P+
Sbjct: 325 HRAGLVLANLTDRSAGSHVEGVAGVVAGDGTRPPFKDATFDRILVDAPCTGLGALRRRPE 384

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
             W R T D+      QR LL + +   +PGG+V+++ CS    ++  VVQ VL      
Sbjct: 385 ARWRRGTADLDVLVDLQRSLLDRAVDLTRPGGVVLYATCSPVLAETSGVVQSVLADR-SD 443

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           V L P+ +      D A  +  EG +++ P           G D  F   LRR
Sbjct: 444 VRLEPIAATVGDVPDSAGPI--EGTVQLWPH--------RHGTDAMFLALLRR 486


>gi|15807162|ref|NP_295891.1| sun protein [Deinococcus radiodurans R1]
 gi|6459968|gb|AAF11717.1|AE002050_3 sun protein, putative [Deinococcus radiodurans R1]
          Length = 439

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 184/435 (42%), Gaps = 34/435 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  +L  V+         LD     +    L  RD  L   IV  TLR  P +DA
Sbjct: 37  PAREVAVRVLIRVLAGEGFAATALDSALQSAR---LPGRDAGLATHIVYGTLRHFPSLDA 93

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            L  +L     +     + LL     + L+LD   +AVV+  V  A+  +       LVN
Sbjct: 94  ALSPLLTG---KTHPKARALLLAGAFEKLHLDTPLHAVVNEYVNLARDARLAP--PGLVN 148

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           ++LRRV +         A +  +P+W  +     YG++    ++D               
Sbjct: 149 AVLRRVEK---------ADVPDVPKWLADVYRGAYGEQASAVLADLLTPQPLWLSLSDAG 199

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +       N V     G    EL +S+ +   F +G     + ++   V   G +  + V
Sbjct: 200 VRMLEEDGNVVHPGIQGTERVELAQSLRATRAFMQGQAQPINPASLACVDALGDVAGVRV 259

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           LDL    G K A L   GA+VT++DV  R+ +  R NL RL L+AE +   D        
Sbjct: 260 LDLAGGMGIKAAMLATRGAEVTSVDVVARKHDAARANLKRLGLHAEFL-THDLTTPLDLP 318

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
              AVL+DAPC+ +GT+R HP++      D + ++A  Q ++L    + V PGG++V+S 
Sbjct: 319 PAPAVLLDAPCTGSGTLRSHPEIKLRLTPDAVAEAAALQAQMLPNAAALVAPGGVLVYSV 378

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+ KQ+   VV   L + P               +D+    +  G + +          
Sbjct: 379 CSVTKQEGPGVVADFLAAHPEF------QPESVPELDVPHVAAGAGVLTV---------- 422

Query: 426 VSSGMDGFFAVALRR 440
              G+DGFF   LR+
Sbjct: 423 PLGGVDGFFIARLRK 437


>gi|257470180|ref|ZP_05634271.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|317064397|ref|ZP_07928882.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690073|gb|EFS26908.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
           49185]
          Length = 432

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 192/453 (42%), Gaps = 38/453 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN +  +  L+  V          L+  + ++    L+++++  +  +    +R    +D
Sbjct: 1   MNVKQRAIGLIQEVE-NGKYSNIALNDYFREN---TLNRKERGFITELFYGVIRKKIFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             ++  +      KK  ++ LLR+S+ QI ++   +  VV  A E AK+        K V
Sbjct: 57  YEINKRVS---TIKKDWIRNLLRISIYQITFMKSDNKGVVWEASELAKKKFG-VPVGKFV 112

Query: 125 NSILRRVSREKIELL------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N +LR   RE  + +       ++  +   P WF E++   YG E      ++     YI
Sbjct: 113 NGVLRGYLREMEDDIKELRETDKLDILLSYPRWFYEKIREEYG-EEAELFLESLKKIPYI 171

Query: 179 DLTVKF------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
              V        + E      +  ++             ++    F EG   VQDAS+ +
Sbjct: 172 SFRVNTLKYSEKEFEELLLAKDIEIIKKVDTVYYVDSGILLYSDEFKEGKIIVQDASSYL 231

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +         VLD C+APGGKTA   +L+ +  ++ ALD+   +L+ +  N  +L + 
Sbjct: 232 SAKNLNPSEKDLVLDTCSAPGGKTAVLGELMGNKGELLALDIYPHKLKLIEENCKKLGID 291

Query: 290 AEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               ++MDA       K FD +LVDAPCS  G +R+ P+ ++ +  +++   A  Q ++L
Sbjct: 292 IVKPVKMDARKLNQQGKKFDKILVDAPCSGYGVLRKKPEAIYNKTAENVGLLAELQFEIL 351

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K  G +V+S C++ K+++ E +++ L   P         +  +   ++     
Sbjct: 352 ESASQVLKDDGELVYSTCTILKEENTENIKRFLEKYPEF-----ETAEVYIPENVKGTYD 406

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             G   I        D     +DGF+   +R+ 
Sbjct: 407 EAGGFTI--------DYNEDILDGFYIAKIRKK 431


>gi|209963503|ref|YP_002296418.1| tRNA and rRNA cytosine-C5-methylase, putative [Rhodospirillum
           centenum SW]
 gi|209956969|gb|ACI97605.1| tRNA and rRNA cytosine-C5-methylase, putative [Rhodospirillum
           centenum SW]
          Length = 456

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 108/458 (23%), Positives = 179/458 (39%), Gaps = 45/458 (9%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  LLS +         L+   + +  +  +  +D+  V  +V   LR 
Sbjct: 1   MTP--AARIQAAIDLLSEIEATPRPADALVSQFFRNRRY--IGAKDRQGVAGLVYSVLRH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             R+   LD   +   PR     + +L                 V      AK       
Sbjct: 57  RGRLGWWLDRCNVMPTPRALLLAEAVLVQG---------RRADSVSGLFNGAK--FGPEP 105

Query: 120 FAKLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYI 178
                  +L+ V    I+  ++   ++  +PEW +  L   +G +R  A   A +    +
Sbjct: 106 LNDSERRLLKAVDTHTIDHPKQPEALALEVPEWAEAPLRAAFG-DRFHAEMAAMLGEAPL 164

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDAS 229
           DL         E     L    +      L       +    + +LP F EG++ +QD  
Sbjct: 165 DLRANPLKAAREQVQAALAEAGVTAAPTGLSPLGLRVQGRAPVSALPAFREGLFEIQDEG 224

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   L      + V+D CA  GGK    A ++ +  +V A DV + RL + +    R 
Sbjct: 225 SQLVALLADPRPGMQVVDFCAGAGGKTLAIAAMMDNKGRVVASDVLEGRLTRAKERFRRA 284

Query: 287 HLYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            L+  +      E D +    K  FD V+VDAPCS TGT RR+PD  W      + +   
Sbjct: 285 GLHNIETRALSSERDPWVKRHKGKFDRVVVDAPCSGTGTWRRNPDSRWRPLGPGLAELLP 344

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      V+PGG +V++ CSL  +++E  V+  L + P    L+P+  A+ +++ 
Sbjct: 345 LQAAILDSAARLVRPGGRLVYATCSLLPEENERQVEAFLANHP-AFRLLPVAEAWPENLG 403

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A        +R+TP             DGFFA  + R
Sbjct: 404 AAPVTGD--TLRLTP--------ARHDTDGFFAAVMVR 431


>gi|163815235|ref|ZP_02206612.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759]
 gi|158449430|gb|EDP26425.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759]
          Length = 452

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 184/463 (39%), Gaps = 45/463 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N R V   +L  + +        L      + F  +S++D+  +  +V       
Sbjct: 1   MEK--NTREVVLSILLDIEKNHTFSNTALGTALRANQF--MSKQDRAYITRMVEGVTEKR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            R+D +++    + + + K  ++ +LR+   +I Y+D V D+   +L V+ A  D     
Sbjct: 57  MRLDYIVNQFSKTKINKCKPLIRCVLRMGTYEIFYMDSVQDHTACNLCVKLA-ADHGFGS 115

Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
               VN +LR             ++ +     + +  +PE   E LE  Y  E +  I  
Sbjct: 116 LRGFVNGVLRNIARNKDSIVFPDQEKDKRAYYSVMYSVPEELLEILERDYDYETIDRILA 175

Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221
           +  S     + V  +  +                         L    + I  +PGF +G
Sbjct: 176 SGDSDRPTAIRVNTEKISVTAFSEKLRQNGITVERGSMNDTSLLISGYDYIRKVPGFFDG 235

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEK 278
            + VQD S+ + V+  G      V+D+CAAPGGKT    +   S   V + D++ ++ E 
Sbjct: 236 EFVVQDQSSCLAVKAAGINEGDLVVDVCAAPGGKTMYAAMLTGSEGHVISRDLTDKKTEL 295

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  N++RL L    +   DA ++  +     D V+ D PCS  G + R  D+ +    + 
Sbjct: 296 IEENIERLGLSNVTVQVHDAREFDEELTGKADVVIADLPCSGLGIMGRKNDIKYHVSMES 355

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           + + A  QR++L     +VKPGG +V+S C++D  +++E       +      L  ++  
Sbjct: 356 VKELAQLQREILDTVCRYVKPGGTLVYSTCTIDSIENDENAVWFADTH--DFSLCGIDDV 413

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             +       ++    I                 DGFF    R
Sbjct: 414 VPEHGGERGFVTLHQGI--------------DECDGFFISKFR 442


>gi|262370763|ref|ZP_06064087.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
 gi|262314125|gb|EEY95168.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
          Length = 434

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 198/452 (43%), Gaps = 40/452 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             +N R      L  V +   SL  +L          ++S +D+ L   +V   LR    
Sbjct: 10  KTLNLRAQVVKTLLAV-QNGQSLASVLQQH-----MAIVSDKDRALYHELVLGCLRQWHA 63

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  V   +L   L      ++  L V + Q+L   VA +A +   VE AK+     + + 
Sbjct: 64  LKQVTLPLLTKPLE--NQVVETCLYVGLYQLLCTRVAAHAAISETVEAAKQ-LGMENLSG 120

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +VN+ILRR +RE  +    +   S +P W  +RL+  +G E++  IS        + L V
Sbjct: 121 VVNAILRRATRETEQFYDVLEQASNLPSWLSKRLKKDWG-EQLAEISYELKQVAPLTLRV 179

Query: 183 KF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233
                  + +   L    +      L            I SLPGF  G + VQD  A + 
Sbjct: 180 NTLQVSRDEYLEILEDEGIEAHACELSNVGIVLDNSLHIPSLPGFEVGGFSVQDEHAQLC 239

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-- 289
             L   LN   V+D CAAPGGKTA    +    K+ ALD  ++RL+++  NL+RL L   
Sbjct: 240 ATLLPDLNGKFVIDACAAPGGKTAHILEMYQPKKLIALDQDEKRLKRVSENLERLALSEE 299

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +II  DA  +   +L D +++DAPCS+ G IRRHPD+   R + DI K+   Q+++L 
Sbjct: 300 PVEIITADAVKWTSPELADCIVLDAPCSAIGVIRRHPDIRLLRQSGDIAKTVQLQKQILE 359

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                +K GG +++  CS+ K ++E+ +           E+          ID    +  
Sbjct: 360 NMWQQLKVGGTLLYITCSILKAENEQQMVDFFAEHTDAKEIK---------IDADWGIEQ 410

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               ++ P +           DGF+   + ++
Sbjct: 411 IHGRQLLPQVGRG--------DGFYYCRIEKI 434


>gi|107099010|ref|ZP_01362928.1| hypothetical protein PaerPA_01000017 [Pseudomonas aeruginosa PACS2]
 gi|218888763|ref|YP_002437627.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
           aeruginosa LESB58]
 gi|218768986|emb|CAW24744.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
           aeruginosa LESB58]
          Length = 434

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 200/455 (43%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +   L+ V+  R SL+  L           ++ RD+ L + +     R+ PR+ 
Sbjct: 1   MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL + + Q+LY  +  +A +   V  A + K+      ++
Sbjct: 56  ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      E+ +  +     P W  + L+  +  E++ A+  A  +   + L
Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            V     + + +  +L    +                P  +  LPGFAEG   VQD +A 
Sbjct: 174 RVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288
           +  +L  +     VLD C APGGKT  L+ +     +V A+D+ + RL ++R NL RL L
Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A           ++   K F  +L+DAPCS+TG IRRHPD+   R  +DI   A  Q +
Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG+++++ CS+   ++ + +   L  +P   EL          +     
Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      ++ P +         G DGF+   L ++
Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431


>gi|15595215|ref|NP_248707.1| hypothetical protein PA0017 [Pseudomonas aeruginosa PAO1]
 gi|46397033|sp|Q9I7A9|RSMB_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|9945836|gb|AAG03407.1|AE004441_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 434

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +   L+ V+  R SL+  L           ++ RD+ L + +     R+ PR+ 
Sbjct: 1   MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL + + Q+LY  +  +A +   V  A + K+      ++
Sbjct: 56  ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      E+ +  +     P W  + L+  +  E++ A+  A  +   + L
Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            V     + + +  +L    +                P  +  LPGFAEG   VQD +A 
Sbjct: 174 RVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +  +   +     VLD C APGGKT  L+ +  +   V A+D+ + RL ++R NL RL L
Sbjct: 234 LAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A           ++   K F  +L+DAPCS+TG IRRHPD+   R  +DI   A  Q +
Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG+++++ CS+   ++ + +   L  +P   EL          +     
Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      ++ P +         G DGF+   L ++
Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431


>gi|116053737|ref|YP_788172.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115588958|gb|ABJ14973.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 434

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/455 (25%), Positives = 198/455 (43%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +   L+ V+  R SL+  L           ++ RD+ L + +     R+ PR+ 
Sbjct: 1   MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL + + Q+LY  +  +A +   V  A + K+      ++
Sbjct: 56  ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      E+ +  +     P W  + L+  +  E++  +  A  +   + L
Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDTLCAANNAHPPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            V     + + +  +L    +                P  +  LPGFAEG   VQD +  
Sbjct: 174 RVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEATQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288
           +  +L  +     VLD C APGGKT  L+ +     +V A+D+ + RL ++R NL RL L
Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A           ++   K F  +L+DAPCS+TG IRRHPD+   R  +DI   A  Q +
Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG+++++ CS+   ++ + +   L  +P   EL          +     
Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      ++ P +         G DGF+   L ++
Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431


>gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora]
 gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora]
          Length = 451

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/466 (24%), Positives = 185/466 (39%), Gaps = 61/466 (13%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+++R+V+  +L  V       +  L+          L   D+ L   I   ++R   
Sbjct: 18  SAGLDSRMVAWQILQSV-AAGAYASVALEKALQRHP---LPPVDRGLATEIAYGSIRRRL 73

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  L  +      ++   L+ LL V + Q+L+   V   A ++  VE AK+       
Sbjct: 74  TLDTYLSHLGKVLANKQPPLLRWLLHVGLYQLLFVERVPSAAAINTTVELAKKSSL-ATL 132

Query: 121 AKLVNSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           A +VN ILR   R +               +  I  +P W    L ++ G+  + A +  
Sbjct: 133 APVVNGILRTAHRFQQSGKAFVTLSNSSNNLEAIHSLPNWLTNNLLSWRGQMGLEAFAVT 192

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGG-------IRLKELPESIVSLPGFAEG 221
                 IDL +           H L  + +           I +     ++  LPGF  G
Sbjct: 193 SNDSPPIDLRINPLNTSRAQVLHALIKLGIKAQPLPGLSQGIAILGRLGNLQILPGFKLG 252

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            W +QD +A     L        VLD+C+APGGK+  +   +    ++ ALD SK RL+K
Sbjct: 253 HWCIQDRAAQWISPLLDPHPGHRVLDVCSAPGGKSTHIAELMGDVGEIWALDSSKVRLQK 312

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  N  RL L     +  D       K      FD +L+DAPCS  GT+ RH D  W   
Sbjct: 313 VVLNAKRLGLQTIHTLVADGITISDLKPEWKGTFDRILIDAPCSGLGTLVRHSDARWRIT 372

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            +DI +    Q +LL   I  +KPGG +V++ C+++  ++E  + K+L SS     +   
Sbjct: 373 FNDIKELERIQERLLKGIIPLLKPGGKLVYATCTINPNENETQITKLLNSSSNYSCI--- 429

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                                      +     S+  +GFFA  L 
Sbjct: 430 -------------------------FQQTRWPSSAYGNGFFAAVLE 450


>gi|154707343|ref|YP_001423631.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|165922514|ref|ZP_02219685.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
           RSA 334]
 gi|154356629|gb|ABS78091.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|165916719|gb|EDR35323.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
           RSA 334]
          Length = 430

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 214/456 (46%), Gaps = 48/456 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ L++ V++K+ SLT LL            ++ +Q L++ +   TLR+  ++ 
Sbjct: 1   MNTRATAAILVNQVVQKKRSLTALLSA----------NKNNQSLIQELCYGTLRWYFKLK 50

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + +L + L  K + +  L+     Q+ YL++  + +V+  V  A+  K+      L+
Sbjct: 51  LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKP-WAKGLI 109

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N +LRR   EK        + I G    P WF + ++  +      + I++    P+ + 
Sbjct: 110 NKLLRRFIAEKDELLTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARPPMTLR 169

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           + + K   E +   L+   +    +           P S+  LPGF EG  ++QDA+   
Sbjct: 170 VNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQF 229

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289
              L    NN +VLD CAAPG KT+ ++     +    A+D +K+RL +++ N+ RL L 
Sbjct: 230 AAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLR 289

Query: 290 AEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            E +  +         +   +LFD +L+DAPCS+TG IRRHPD+   R   DI +    +
Sbjct: 290 QEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKK 349

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +LL    + +K GG +++S CS+   ++E+V+++ L +    VEL P N          
Sbjct: 350 LQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTH-DKVELSPTNV--------- 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 G +++      +        DGF+   L +
Sbjct: 400 -----HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 428


>gi|315172961|gb|EFU16978.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX1346]
          Length = 459

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 113/469 (24%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     R    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNTGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 415

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 183/452 (40%), Gaps = 51/452 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR+ +   L  +   +      L  E   +       +D+ L+  IV  TL+      
Sbjct: 1   MNARMFAYTALCQICIHKTYSNLYLRKELDKA-----EHKDKGLITTIVYGTLQNYRLCR 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123
              + ++      +      LL +S  Q+ Y+D    YA+++ AVE AK+    +  A L
Sbjct: 56  YQWEDMVQKLPKEETAV---LLDMSAYQLFYMDKLPAYAIINEAVEIAKKHGGKKQGA-L 111

Query: 124 VNSILRRVSREKIELLQRIA-----GISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           VN++L +V +     L + A       +  P+W  +  +  YG+E   AI ++ +     
Sbjct: 112 VNAVLHKVMQRGQRELPKDALQKLAIKTSHPDWLIKMWKAQYGEETCRAICESNMETRKQ 171

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
              V       E    + N   +      +     S+     + +G+  +QD ++ +   
Sbjct: 172 CARVNLMRMSREELLAQDNQFTVGQLASSVYYQGTSLAHTSWYVDGMLSIQDEASQLVAY 231

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                    +LD+CAAPG K+  +   +    ++   D+ + R+E ++   DRL L++  
Sbjct: 232 CVDPQPKERILDVCAAPGTKSTHMAELMQDEGEIICGDIHEHRVELIQQGADRLQLHSIH 291

Query: 293 IIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            I MDA       +  FD VL D PCS  G + R  D+ +   ++D+      Q  +L +
Sbjct: 292 PIVMDATELHGLQEASFDRVLCDVPCSGYGVLARKSDIKYHMQSEDMDTLIPLQAAILEK 351

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             + VK GGI+V+S C+L+K+++E+ V+K L+       +                    
Sbjct: 352 ASTMVKQGGILVYSTCTLNKKENEKQVEKFLKKHEEFTLVS------------------- 392

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                       I     G DGF+   + +  
Sbjct: 393 ---------QRTIFPFEFGSDGFYMAKMEKKA 415


>gi|58040030|ref|YP_191994.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H]
 gi|58002444|gb|AAW61338.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H]
          Length = 447

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 136/437 (31%), Positives = 214/437 (48%), Gaps = 29/437 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  ++  V+  R  L   LD          +  RD+     +   TLR L  +  
Sbjct: 39  PTRDLAFDIVCGVVEHRRMLETTLDRAGA------MDARDRASAHRLAATTLRHLGSMTE 92

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L  +L    P     ++  L + VAQ+L+L+   +A V   V+  +R +    FA L N
Sbjct: 93  LLQPLLRREPPE---PVRCALLMGVAQLLHLETPPHAAVGTIVDLLRR-RGLAPFAGLAN 148

Query: 126 SILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           ++LRRV+RE  ELL         +P W            R  AIS        +DLT++ 
Sbjct: 149 AVLRRVAREGQELLDGLDEDRLDVPPWLWSAWGK-----RARAISRGLHREAPLDLTLRP 203

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                A       +   G         I +L GF +G +W QD +A++PV+L G +   +
Sbjct: 204 G----AVAPEGGEVLPTGSVRYPAGTRITTLEGFEDGAFWAQDVAATMPVKLMGDVAGKT 259

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           V+DLCAAPGGKTAQL  +GA V A++  + R ++L  N+ RL L A+ +   DA  + P+
Sbjct: 260 VVDLCAAPGGKTAQLATAGAHVVAVEREEARAKRLEENIVRLKLSAKTV-VADAATWRPQ 318

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
              D VL+DAPCS+TGT+RRHPDVLW +   D+   A  Q  L+      +KPGG+++++
Sbjct: 319 TPVDMVLLDAPCSATGTLRRHPDVLWIKRPRDVTALAEGQDALIDAAHEMLKPGGVLLYA 378

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CSL  ++  E ++  +       +      +  +  DMA+A + +G  R  P +  ++ 
Sbjct: 379 VCSLQDEEGPERIKAAIARGGWKFD----PFSEAELADMAVARTWDGMFRTHPGLWSEL- 433

Query: 425 GVSSGMDGFFAVALRRL 441
               GMDGFFA  L ++
Sbjct: 434 ---GGMDGFFAARLIKV 447


>gi|229547453|ref|ZP_04436178.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229307485|gb|EEN73472.1| RNA methyltransferase [Enterococcus faecalis TX1322]
          Length = 459

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 111/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RL++        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLNVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|183982229|ref|YP_001850520.1| Fmu protein [Mycobacterium marinum M]
 gi|183175555|gb|ACC40665.1| Fmu protein [Mycobacterium marinum M]
          Length = 481

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 107/463 (23%), Positives = 172/463 (37%), Gaps = 46/463 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  + + L  V  +      +L     +   R ++ RD      +     R    +DA
Sbjct: 39  PARGAAFNALRAVSERNAYANLVLPALLRE---RGITGRDAAFATELTYGACRARGLLDA 95

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++      S       L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN
Sbjct: 96  IIGAAAGRSPEAIDPVLLDLLRLGAYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 154

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVL--AISD 170
           ++LR ++    +                  A +   P W  +   +  G       A+  
Sbjct: 155 AVLRTIADRDEQSWVQELAPDPRRDPVGHAAFVHAHPRWIAQAFADALGPSAAELDAVLA 214

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +         A ++   +       +  L      L    +G   VQD
Sbjct: 215 SDDERPQVHLAARPGVLTAAALADEVRGTVGRYSPYAVYLLGGDPGLLAPVRDGQALVQD 274

Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKL 279
             + +  +              LDLCA PGGKTA      + +GA+VTA++ S  R + +
Sbjct: 275 EGSQLVARALTLAPVEGDSGRWLDLCAGPGGKTALLAALGVATGARVTAVEPSSHRADLV 334

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             N         D++  D      + +FD VLVDAPC+  G +RR P+  W R   D+  
Sbjct: 335 ADNT---GGLPVDLVRGDGRYTDLEPVFDRVLVDAPCTGLGALRRRPEARWRRQPSDVPT 391

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               QR+LL   I+  +PGG+V+++ CS    ++  VV   LR  P     V        
Sbjct: 392 LVKLQRELLAAAINLTRPGGVVLYATCSPHLAETVGVVADALRRHP-----VDALDTRAL 446

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +   L    ++++ P           G D  FA ALRR  
Sbjct: 447 FEPITEGLGEGPYVQLWPH--------RHGTDAMFAAALRRRA 481


>gi|257420431|ref|ZP_05597421.1| SUN protein [Enterococcus faecalis X98]
 gi|257162255|gb|EEU92215.1| SUN protein [Enterococcus faecalis X98]
 gi|315154707|gb|EFT98723.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0043]
          Length = 459

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLVQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVTNE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
           DG893]
 gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
           DG893]
          Length = 433

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 198/450 (44%), Gaps = 37/450 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G   R V++ ++  V     SL+  L    GD     ++  ++  ++A+   T R+  R+
Sbjct: 5   GQPLRAVAARVMQSVE-NGQSLSQCLPHAMGD-----VADNERPPLQALCYGTCRWFHRL 58

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D  L   L   L +    +  L+ V++ Q+ +   A YA+++  VE A R  +  H   L
Sbjct: 59  DGELQARLNKPLRKSNRVVHHLMLVALFQLRFSQQATYAILNETVE-ACRALDKPHLTGL 117

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTV 182
           VN +LR   RE    L   AG    P W  E+L + +  +   +  ++   +P+ + +  
Sbjct: 118 VNGVLRAAEREGEPPLADEAGRFSHPLWMLEKLRHNWPHDWQAILETNNTQAPMTLRVNA 177

Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQ 235
            +F  + +   L+   +                P  +  LP F+EG   VQD +A +   
Sbjct: 178 LRFSRDDYLQLLSDAGIDAKATLFAPHGIQLTAPVPVDLLPWFSEGAVSVQDEAAQLCTT 237

Query: 236 LFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE- 291
           L        VLD CAAPGGKT    +      +V A+D S  RL +++ NL+RL L A  
Sbjct: 238 LMDLAPGQRVLDACAAPGGKTCAILESCGELEEVVAIDESADRLPRVQENLERLDLMATL 297

Query: 292 -DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                 D   +  +K FD +L+D PCS+TG IRRHPD+   R   DIV  A  Q  LL  
Sbjct: 298 KQADAADIDQWWDRKPFDRILLDVPCSATGVIRRHPDIKLLRRESDIVPLASIQLGLLES 357

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               + PGG +V++ CS+  Q++  ++++ L+       + P         D+      E
Sbjct: 358 MWQVLAPGGRLVYATCSVFPQENHRIIRRFLKQQDNAALVEP---------DVLWGRDME 408

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              ++ P        V    DGFF   L +
Sbjct: 409 TGRQMLP--------VPESHDGFFYAVLEK 430


>gi|226509581|ref|NP_001146662.1| hypothetical protein LOC100280262 [Zea mays]
 gi|219888225|gb|ACL54487.1| unknown [Zea mays]
          Length = 555

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 115/478 (24%), Positives = 187/478 (39%), Gaps = 60/478 (12%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAF-------------RLLSQRDQILVRAIVN 54
           R V+   L  + + +  +  L +                     R L  RD  LV  IV 
Sbjct: 90  RAVAVVRLLRIEKGKAFVDLLNEKANDSGDKEIGYVQRTLGFSTRYLEDRDIRLVTVIVA 149

Query: 55  VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
            T+R+   +D ++  +          +  L Q+LR+   +IL LDV  YA VD  V  AK
Sbjct: 150 GTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLDVPAYAAVDENVRLAK 209

Query: 113 RDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLEN 158
                     +VN+ILR+              +  +     + ++ I   P W   R   
Sbjct: 210 VALRP-GAGNMVNAILRKLVLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIR 268

Query: 159 FYGKERVLAISDACISPLYIDLTVKFD----------IETWAHKLNAVMLPTGGIRLKEL 208
           F+GK+  L + +   S  +  L V                         +    +R++E 
Sbjct: 269 FHGKDEALRLMNWNNSDPHFSLRVNTSKGYTRADLVKRLESLQVHYEESIMDEFVRIREG 328

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAK 265
            + ++      +G+  VQD SA + V +       +++D CAAPGGKT  +        K
Sbjct: 329 MQQVLKAGLLKDGICAVQDESAGLVVSVVDPQPGETIVDCCAAPGGKTLFMASRLSGEGK 388

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTI 322
           + ALD++K RL  L        L      I  D   Y  +    +D VL+DAPCS  G +
Sbjct: 389 IWALDINKGRLRILMDAAKLHGLDDMITDIHADLRLYAKETTVKYDKVLLDAPCSGLGVL 448

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            +  D+ W R  +++ +  C Q +LL      VKPGGI+++S CS+D +++EE +   ++
Sbjct: 449 SKRADLRWNRQFENLEELMCLQDELLDSASMLVKPGGILIYSTCSIDPEENEERITAFVQ 508

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             P                     ++ EG+           +     MDG FA  L R
Sbjct: 509 RHPEFA------LQSVCGYVPREFITDEGFY--------SSNPTKHSMDGAFAARLVR 552


>gi|153209759|ref|ZP_01947497.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
           'MSU Goat Q177']
 gi|212217708|ref|YP_002304495.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|120575262|gb|EAX31886.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
           'MSU Goat Q177']
 gi|212011970|gb|ACJ19350.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 430

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 214/456 (46%), Gaps = 48/456 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ L++ V++K+ SLT LL            ++ +Q L++ +   TLR+  ++ 
Sbjct: 1   MNTRATAAILVNQVVQKKRSLTALLSA----------NKNNQSLIQELCYGTLRWYFKLK 50

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + +L + L  K + +  L+     Q+ YL++  + +V+  V  A+  K+      L+
Sbjct: 51  LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKP-WAKGLI 109

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N +LRR   EK        + I G    P WF + ++  +      + I++    P+ + 
Sbjct: 110 NKLLRRFIAEKDELLTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARHPMTLR 169

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           + + K   E +   L+   +    +           P S+  LPGF EG  ++QDA+   
Sbjct: 170 VNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQF 229

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289
              L    NN +VLD CAAPG KT+ ++     +    A+D +K+RL +++ N+ RL L 
Sbjct: 230 AAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLR 289

Query: 290 AEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            E +  +         +   +LFD +L+DAPCS+TG IRRHPD+   R   DI +    +
Sbjct: 290 QEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKK 349

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +LL    + +K GG +++S CS+   ++E+V+++ L +    VEL P N          
Sbjct: 350 LQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTH-DKVELSPTNV--------- 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 G +++      +        DGF+   L +
Sbjct: 400 -----HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 428


>gi|312863023|ref|ZP_07723261.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           vestibularis F0396]
 gi|311100559|gb|EFQ58764.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           vestibularis F0396]
          Length = 442

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 200/452 (44%), Gaps = 36/452 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V ++       L+     S    L+ +D+ LV  IV  T+     ++ +
Sbjct: 11  ARGQALEVLEEVFQEGAYSNIALNAHLSKS---YLTDKDKALVTEIVYGTVARKITLEWI 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  V+     + +  +  LL +S+ Q+ YLD +  +AVV+ AV  AK     +   KLVN
Sbjct: 68  LAHVIE-DRDKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAKNRGNKKGAEKLVN 126

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+          E   + +R +    +P W  ++L + YG++R LAI  +    +  
Sbjct: 127 AVLRKLSIQPLPDPSEIKRVNKRYSVQYSLPVWLVKKLIDQYGEKRALAIFQSLFVRNKA 186

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T    +E  A    A       + L +          F EG+  +QD ++ +    
Sbjct: 187 SVRVTDASRLEEIAEATGAERSVLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 246

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
            G      +LD CAAPGGKT  +   ++   VTALD+   +L  +  N  RL L      
Sbjct: 247 LGIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLVLIEENAQRLGLADKVKT 306

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D        P   FD +LVDAPCS  G IRR PD+ + +D  D       Q  +L  
Sbjct: 307 QKLDASQVHQVFPTDSFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFESLKSVQLDILSS 366

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  ++++EV+Q  L S P   E V L+            +   
Sbjct: 367 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHP-DFEQVALDHP-------CKDIVVN 418

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           G + ITP+            DGFF   LR+ +
Sbjct: 419 GCLAITPEQYL--------TDGFFIAQLRKKV 442


>gi|300861499|ref|ZP_07107583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TUSoD Ef11]
 gi|295114431|emb|CBL33068.1| ribosomal RNA small subunit methyltransferase RsmB [Enterococcus
           sp. 7L76]
 gi|300848960|gb|EFK76713.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TUSoD Ef11]
 gi|315144147|gb|EFT88163.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX2141]
          Length = 459

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHCVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|28199632|ref|NP_779946.1| hypothetical protein PD1761 [Xylella fastidiosa Temecula1]
 gi|182682377|ref|YP_001830537.1| sun protein [Xylella fastidiosa M23]
 gi|46396863|sp|Q87AR1|RSMB_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|28057747|gb|AAO29595.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182632487|gb|ACB93263.1| sun protein [Xylella fastidiosa M23]
 gi|307578659|gb|ADN62628.1| sun protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 431

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 127/452 (28%), Positives = 197/452 (43%), Gaps = 37/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G+  R+V++ +L+ V+ +  SL   L              RD+ LV AI    LR  
Sbjct: 1   MSDGIAPRVVAARVLALVVDQGRSLKTELAAALPTLE----DVRDRALVEAICFAVLRRR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P  +A L   L   L R    L+ LL V  AQ+  L V  YA +   V+ A R     H 
Sbjct: 57  PVYEAALTRWLARPLGRGDAQLRGLLMVGFAQLDVLKVPPYAALSATVD-ACRVLGWPHR 115

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYID 179
              VN++LRR  RE++ ++   A     P W  ER+   +  +   +  +    +P+++ 
Sbjct: 116 VSFVNAVLRRAQRERLPVVSSDAAW---PRWLAERIRADWGEQAEAIFDASLKPAPMWLR 172

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           + +   D  T+  +L A  L      L            +V LPGF  G   VQD SA  
Sbjct: 173 VNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSVPVVQLPGFQGGEVSVQDLSAQQ 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L     +  +LD CAAPGGK A          +TALDV  +RL ++    DR+H+ A
Sbjct: 233 VAALLSPAPHARLLDACAAPGGKAAHLLERAPTLCLTALDVDMQRLRRVAETCDRIHVKA 292

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   D   +   + FDAVL+DAPCS+TG +RR PDVL  R  +D++     Q +LL
Sbjct: 293 RLCVADATDLAAWWDGEPFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLPLLNIQSRLL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 ++PGG++V+  CS+ + +++  ++  L  +       P ++    +        
Sbjct: 353 DACWRTLRPGGVLVYVTCSVLRAENQTQLEAFLARTADACAEDPGDAYGQPA-------- 404

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     +  +      G DGFF   L +
Sbjct: 405 ---------GLGRQRLPGEQGGDGFFYARLIK 427


>gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1272]
 gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1272]
          Length = 387

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 104/401 (25%), Positives = 178/401 (44%), Gaps = 37/401 (9%)

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  L   L   +      ++ LLR+S+ Q+LYLD V + A +  AVE AKR + ++  + 
Sbjct: 2   DYYLQPFLRKKVE---AWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKR-RGHKGISG 57

Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +VN +LR + RE         + ++R+A  +  P W  +   + YG E    + +  + P
Sbjct: 58  MVNGVLRSIQREGVPSLEEIKDPVERLAITTSHPAWLVQDWVSEYGLETAGKMCEVNMLP 117

Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 V  D  T    +         A         ++    ++     F +G   +QD
Sbjct: 118 PVPTARVNVDKVTVEEAIGLLANEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 177

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ +  +         VLD CAAPGGKT  +        KV +LD+   ++  +R   D
Sbjct: 178 ESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQAD 237

Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL L   +   +D     ++   + FD +LVDAPCS  G IRR PD+   +D  D  + +
Sbjct: 238 RLGLENVETKALDARKVQEHFENETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 297

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +    +K GG +V+S C+++K ++E+V+++ L+  P   E     +   +  
Sbjct: 298 TIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 354

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       EG ++I P             DGF+   LR+ +
Sbjct: 355 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 387


>gi|255563540|ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
           communis]
 gi|223538010|gb|EEF39623.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
           communis]
          Length = 527

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 109/479 (22%), Positives = 180/479 (37%), Gaps = 61/479 (12%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDS-------------AFRLLSQRDQILVRAIVN 54
           R VS+  L  +         L +   G                 + L  RD  LV  +V 
Sbjct: 62  RAVSAVRLMRIEMGGAFADLLNEKGKGSGENEMGYVERTLGFRTKNLDDRDLRLVTDVVG 121

Query: 55  VTLRFLPRIDAVLDF--VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
            T+R+   +D ++       ++    +  L Q+LR+   +I+ LD+  YAVVD  V  AK
Sbjct: 122 GTIRWRRFLDHLICSLFHDENTFRSMEPLLLQILRIGAYEIVKLDMPPYAVVDENVRLAK 181

Query: 113 RDKENRHFAKLVNSILRRV--------------SREKIELLQRIAGISIIPEWFKERLEN 158
                     +VN ILR++                +     + +A +   P W   R   
Sbjct: 182 VALRP-GAGNMVNGILRKLVLLKENNSLPLPKLEGDARAQARALATLHSHPVWMVRRWTK 240

Query: 159 FYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAV-------MLPTGGIRLKE 207
           + G+E  + +     S     L          +    +LN +             +R++ 
Sbjct: 241 YLGQEEAIRLMIWNNSDPSFSLRANGGKGVTRDDLVTRLNLLKVPYELSPYSDHFVRMRT 300

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264
             + ++      EG   VQD SA + V +       S++D CAAPGGKT  +   +    
Sbjct: 301 GLQIVLQAGLLKEGFCSVQDESAGLVVSIVNPQPGDSIIDCCAAPGGKTVYMASLMEGQG 360

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGT 321
            V A+D++K RL  L+       +                      D VL+DAPCS  G 
Sbjct: 361 MVYAIDINKGRLRILQETAKLHQIDGVITAVPSDLRVLAENYPMKSDKVLLDAPCSGLGV 420

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + +  D+ W R  +D+ +    Q +LL    + VKPGG +V+S CS+D +++EE V   L
Sbjct: 421 LSKRADLRWNRRVEDLEELKNLQDELLDAASTLVKPGGFLVYSTCSIDPEENEERVDAFL 480

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              P   ++ P++      +                        V   +DG FA  L +
Sbjct: 481 LRHP-EFQIDPVDRYVPPDLVTERG-------------FYSSSPVKHSIDGAFAARLVK 525


>gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group]
 gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group]
 gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group]
 gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group]
          Length = 570

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 122/479 (25%), Positives = 191/479 (39%), Gaps = 62/479 (12%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------LSQRDQILVRAIV 53
           R V++  L  + + +  +  LL+ +   S                  L  RD  LV  IV
Sbjct: 105 RAVAAVRLLRIEKGKAFVD-LLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIV 163

Query: 54  NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
             T+R+   +D ++  +          +  L Q+LR+   +IL L+V  YA VD  V  A
Sbjct: 164 AGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLA 223

Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157
           K          LVN+ILR+              +  +     + ++ I   P W   R  
Sbjct: 224 KVALRP-GAGNLVNAILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 282

Query: 158 NFYGKERVLAISDACISPLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKE 207
            F GKE  L +     S  +  + V            D                 +R++E
Sbjct: 283 RFLGKEEALKLMKWNNSDPHFSIRVNTANGYTRADLIDRLESLQVHYEKSTMDEFVRIQE 342

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GA 264
             ++++      EG+  VQD SA + V +       +++D CAAPGGKT  +        
Sbjct: 343 GMQTVLQAGLLKEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQG 402

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321
           K+ ALD++K RL  L       +L A    I  D   Y  +    FD VL+DAPCS  G 
Sbjct: 403 KIWALDINKGRLRILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGV 462

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + +  D+ W R  +D+ +  C Q +LL      VKPGGI+V+S CS+D +++E  +   +
Sbjct: 463 LSKRADLRWNRQFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFV 522

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  P  V               A  ++ EG+                 +DG FA  L R
Sbjct: 523 QRHPDFV------LQSVHGYVPAEFVTDEGFY--------SSSPTKHSIDGAFAARLVR 567


>gi|92114986|ref|YP_574914.1| sun protein [Chromohalobacter salexigens DSM 3043]
 gi|91798076|gb|ABE60215.1| 16S rRNA m(5)C-967 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 433

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 125/451 (27%), Positives = 195/451 (43%), Gaps = 40/451 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R V +  L+ ++  + SL+ L            L  RD+   +A+     R LPR+ A+ 
Sbjct: 2   RAVCASALAPLLDGKGSLSAL----DAHLDTASLDGRDRAFAKALCYGVCRTLPRLQALA 57

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             +L     R+   +Q LL + + Q+LY+ V  +A V      A+   +     +++N  
Sbjct: 58  KLLLRQPFKRRDLDVQALLLIGLYQLLYMRVPAHAAVGETAGAARGLGKG-WATRVLNGC 116

Query: 128 LRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKER-VLAISDACISPLYIDLTV 182
           LRR  R+   L  ++          PEW        +  +   LA ++ C  P+ + + V
Sbjct: 117 LRRFQRDTQTLQAQVDRDPSVALLHPEWMLTEWRQAWPDDWRALAEANNCPGPMTLRVNV 176

Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQ 235
            + D + +  +L    L                P  + +LPGFAEG   VQD +A +   
Sbjct: 177 RQGDRDAYLARLEDAGLSASPTPFAPQGLTLAEPCDVRALPGFAEGAVSVQDEAAQLAAT 236

Query: 236 LFGTL----NNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
           L            VLD C+APGGKTA L       +TALD    RL+++   L+RL L A
Sbjct: 237 LLAPCLAERPGARVLDACSAPGGKTAHLLEAFDIDLTALDSDAERLDRVNATLERLGLDA 296

Query: 291 EDIIE-MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             I        +     FDAVL+DAPCS TG IRRHPD+   R   DI + A  Q +LL 
Sbjct: 297 TTIAADASHHAWWDGHAFDAVLLDAPCSGTGVIRRHPDIKRLRRPRDIRELAALQARLLD 356

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                + PGG ++++ CS+  +++ + V   L  +P          A  ++I+ A     
Sbjct: 357 AAWHTLAPGGTLLYATCSVMPEENADQVAAFLARTPD---------ARAETIEAAWGRPA 407

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               ++ P           G DGFF   LR+
Sbjct: 408 GDGRQLLP--------RIDGHDGFFYARLRK 430


>gi|29833420|ref|NP_828054.1| RNA-binding Sun protein [Streptomyces avermitilis MA-4680]
 gi|29610543|dbj|BAC74589.1| putative RNA-binding Sun protein [Streptomyces avermitilis MA-4680]
          Length = 476

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 163/468 (34%), Gaps = 44/468 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R ++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 22  PVRFLAFEALRAVDERDAYANLVLPPLLRKARQKGDFDGRDAALATELVYGTLRRQGTYD 81

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           AV+   +   L      +  +L + V Q+L   +  +A V  +VE A+    +   AK V
Sbjct: 82  AVIAACVDRPLREVDPPVLDVLSLGVHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 140

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+V++  ++                 +A +   P W    L +  G  R     + 
Sbjct: 141 NAVLRKVAQHDLDGWLEQIAPPYDDDAEDHLAVVHSHPRWVVSALWDALGGGRAGIEDLL 200

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
           +A      + L  +    T    L  +   +                    ++    EG 
Sbjct: 201 EADNERPEVTLVARPGRSTAGELLGVLGEESALPGRWSPYAVRLTEGGEPGAIDAVREGR 260

Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKR 274
             VQD  +               + + LD CA PGGK A         GA + A +    
Sbjct: 261 AGVQDEGSQLVALALANAPLDGPDQAWLDGCAGPGGKAAMLAGLAAERGAVLLASEKQPH 320

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           R   +   L       + I             FD VL+D PC+  G +RR P+  W R  
Sbjct: 321 RAGLVAKALAGNPGPYQVIAADGIRPPWRPGTFDRVLMDVPCTGLGALRRRPEARWRRRP 380

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           +D+   A  QR LL   +  V+ GG+V ++ CS    ++  VV  VL+   +  EL+   
Sbjct: 381 EDLDGFAPLQRGLLRTALDSVRVGGVVGYATCSPHLAETRAVVDDVLKHHTVAAELIDAR 440

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   +         +++ P +         G D  +   +RR  
Sbjct: 441 PLLPGVPALGEGPD----VQLWPHL--------HGTDAMYLALIRRTA 476


>gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           DSM 13855]
 gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           DSM 13855]
          Length = 427

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 166/435 (38%), Gaps = 39/435 (8%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89
           D             R +   R +V    R    +D VL           ++ LQ++LR+ 
Sbjct: 5   DAFVDKLTIEDADARTRRQARELVAGVTRQRRWLDFVLGEAYHGDYDSMEHRLQEILRLG 64

Query: 90  VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI------- 142
           + ++L+     +A VD  VE AK+         LVN +LR + R++  +           
Sbjct: 65  LYELLFQSTPTHAAVDEYVELAKQALRP-GAGNLVNGVLRTIDRDREHIPTPDTGDDAND 123

Query: 143 -AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF------DIETWAHKLNA 195
            A     P W  +R  + +G +    +  A        + +        D+  W  + + 
Sbjct: 124 LALRYSHPTWMVQRWLDRFGLDETTELLRANNRRPMYSVRINPLRTSEADVAAWLDEHDV 183

Query: 196 VMLPTGGIRLKELPESIVSL---PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           V + +  +      + + +L       +G   VQD SA + VQL       +++D CAAP
Sbjct: 184 VNVDSPYLDRYLRLKRLQALIAGDLLDDGHVAVQDESAGLVVQLLDPQPGETLIDGCAAP 243

Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMD---AFDYCPKK 305
           GGK       +     + A+D  ++RLE++    +        +    D           
Sbjct: 244 GGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEAQGASEMVEAETADLRAWAARPEPP 303

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
             D VL+D PC+  G + +   + W R  +D+ + A  Q +LL      V+PGG++V+S 
Sbjct: 304 QGDRVLLDVPCTGMGVLAKRAGLRWRRSMEDLEEMAELQDELLDAAAQLVRPGGLLVYST 363

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+ + +++E  V+  L                 +       +S  G++   P        
Sbjct: 364 CTTEPEENERRVEAFLARHDGFAVESA------EGHVPDEMVSDAGFLATFPH------- 410

Query: 426 VSSGMDGFFAVALRR 440
               MDG FA  LRR
Sbjct: 411 -RHRMDGAFAARLRR 424


>gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group]
          Length = 570

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 122/479 (25%), Positives = 191/479 (39%), Gaps = 62/479 (12%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------LSQRDQILVRAIV 53
           R V++  L  + + +  +  LL+ +   S                  L  RD  LV  IV
Sbjct: 105 RAVAAVRLLRIEKGKAFVD-LLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIV 163

Query: 54  NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
             T+R+   +D ++  +          +  L Q+LR+   +IL L+V  YA VD  V  A
Sbjct: 164 AGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLA 223

Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157
           K          LVN+ILR+              +  +     + ++ I   P W   R  
Sbjct: 224 KVALRP-GAGNLVNAILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 282

Query: 158 NFYGKERVLAISDACISPLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKE 207
            F GKE  L +     S  +  + V            D                 +R++E
Sbjct: 283 RFLGKEEALKLMKWNNSDPHFSIRVNTANGYTRADLIDRLESLQVHYEKSTMDEFVRIQE 342

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GA 264
             ++++      EG+  VQD SA + V +       +++D CAAPGGKT  +        
Sbjct: 343 GMQTVLQAGLLKEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQG 402

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321
           K+ ALD++K RL  L       +L A    I  D   Y  +    FD VL+DAPCS  G 
Sbjct: 403 KIWALDINKGRLRILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGV 462

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + +  D+ W R  +D+ +  C Q +LL      VKPGGI+V+S CS+D +++E  +   +
Sbjct: 463 LSKRADLRWNRQFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFV 522

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  P  V               A  ++ EG+                 +DG FA  L R
Sbjct: 523 QRHPDFV------LQSVHGYVPAEFVTDEGFY--------SSSPTKHSIDGAFAARLVR 567


>gi|124025193|ref|YP_001014309.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
 gi|123960261|gb|ABM75044.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
          Length = 448

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 113/467 (24%), Positives = 188/467 (40%), Gaps = 60/467 (12%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G++AR  +  ++  V          L+  +   +F+ +   D+ L+  +    +R    
Sbjct: 11  KGLDARKAAWEVIQAV-GGGSFADVALERIFNLYSFKSI---DKALITELSYGAIRQRYY 66

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +D +      ++   L+ LL + + Q+L +  +   A ++  VE AK     R  A
Sbjct: 67  LDCWIDHLGKVPAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAKTHHL-RKLA 125

Query: 122 KLVNSILRRVSREK---------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            +VN ILR   R K               +A    +P WF E L  + G E    I+ A 
Sbjct: 126 PVVNGILRSALRSKERGLLLPKSNNPSLELAKNESLPVWFAEELIAWKGVEHAQQIAKAF 185

Query: 173 ISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
            S   ID+ V                   +   +     G+ ++         PG+ EG 
Sbjct: 186 NSVSPIDIRVNKLRADLKDVKELFDTCGIQNQLIPNCPSGLEVRAGIGEPRQWPGYEEGK 245

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           W VQD S+ +     G L    +LD CAAPGGK+  +   I +   + ++D S RR +K+
Sbjct: 246 WSVQDRSSQLIAPSLGPLPGEKILDACAAPGGKSTHIAELINNEGNLWSVDRSSRRSKKI 305

Query: 280 RCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
             N +RL      I+  D+          K  FD +L+DAPCS  GT+ RHPD  W  + 
Sbjct: 306 LANSERLGTKCLQILVADSNELLLKKPDWKGFFDRILIDAPCSGLGTLARHPDARWRMNQ 365

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           D+I +    Q +LL      +K GG +V+S C++  +++   ++  L+S    +      
Sbjct: 366 DNIQQLVAVQSQLLNSLAPLLKNGGKLVYSTCTIHPEENSHQIKNFLQSKSEFLL----- 420

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                          E   +I P             DGF+   L +L
Sbjct: 421 ---------------EYEKQIWPGEG-------DNGDGFYIAVLNKL 445


>gi|331004329|ref|ZP_08327804.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411395|gb|EGG90810.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 444

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 99/456 (21%), Positives = 199/456 (43%), Gaps = 31/456 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N R +   +L  +  ++     ++D+      +  LS+ D+      V+  + + 
Sbjct: 1   MEK-TNIRALVLEVLLLINVEKEYSHKVIDMALE--KYSYLSKSDRGFFSKAVHGVIEYR 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D ++     ++  R K  ++++LR+S+ Q+LY+D V D AV++ AV   K  +    
Sbjct: 58  LQLDYIIKKY--NNGKRIKPVIREILRMSIYQMLYMDRVPDRAVINEAVNLVK-LRRLPG 114

Query: 120 FAKLVNSILRRVSREKIELLQRI-AGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
               VN ILR++S EK +++    +    +PE     +++  G      +         +
Sbjct: 115 LTGFVNGILRKISGEKDKIVFDDLSIKYSMPEPVLNIIKDNTGDYFEETLDYFLKIKP-V 173

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---------GVWWVQDAS 229
            + V     +    +  +      + +  L   I+ + GF +         G  ++ DAS
Sbjct: 174 SIRVNTSKSSVKDIIKELEDENIRVDISNLNTDILYISGFDKVDEISVIKSGKAYITDAS 233

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           +S+  +L  T N    +D+CAAPGGK+      ++   K+ + D+S  ++  ++ N +  
Sbjct: 234 SSMISKLIETKNIKKCVDVCAAPGGKSFLLADKLLKDTKIYSCDISDNKVNIIKENANIQ 293

Query: 287 HLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                  +  DA  +  K    D VL D PCS  G I + PD+ +  + D+    A  Q+
Sbjct: 294 GFENIIPMIADARSFDEKFLDADIVLADLPCSGIGIIGKKPDIKYRLEEDNFNSLAALQK 353

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSIDMA 404
           ++L   + +VK  G ++FS C+L+++++EE +   L          + L         + 
Sbjct: 354 EILDNVVGYVKKDGELIFSTCTLNRKENEENMLYFLEKHRDFKAVDLSLRLDKRVVEKLN 413

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +   +G++++ P             DGFF    RR
Sbjct: 414 ESELKKGYLKLIPG--------RDDCDGFFIAVFRR 441


>gi|296327374|ref|ZP_06869923.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296155489|gb|EFG96257.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 435

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 198/452 (43%), Gaps = 37/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN + V+ +L+S V  +       L+  +       ++ +++  +  I    +R    +D
Sbjct: 1   MNVKKVAINLISQVD-RGAYSNIALNETFK---TLNVNSKEKAFITEIFYGVIRNKKFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ QI ++D  D  VV    E AK+       +K +
Sbjct: 57  YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDDKGVVWEGTELAKKKYG-IPISKFI 112

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K       +  +    +  IP+WF   LE  YG E +     +     Y+
Sbjct: 113 NGTLRNYLRNKDLELKRLDDEKNYEVLYSIPKWFYNTLEKQYGNENLKQAITSLKKIPYL 172

Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            + V        + E +  + +  ++             I++   F  G    QDAS+ +
Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIINSEEFKTGKIIAQDASSYL 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +    + N  VLD+CAAPGGKTA   + + +  ++ A+D+ + +++ +  N+ +L + 
Sbjct: 233 AAKNLDAMPNELVLDICAAPGGKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRID 292

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I MD        + FD +LVD PCS  G IR+ P++L++++ +++ + A  Q ++L
Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENVEELAKLQLEIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++S C++  +++   ++K L           +   Y     +    S
Sbjct: 353 NSAADILKDGGELIYSTCTITDEENTNNIKKFLEERKEF----KVEKLYIPENVLGDFDS 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G+          I+     MD F+ + L++
Sbjct: 409 LGGF---------CINYKEEIMDNFYIIKLKK 431


>gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
           VCS1703A]
 gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
           VCS1703A]
          Length = 418

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 189/445 (42%), Gaps = 39/445 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR  ++  L  V+ +R SL  LL           L   D+ L + +V  TLR    + 
Sbjct: 1   MKAREAAARTLFAVIEQRQSLNQLLPAF-----KNQLPDIDRALYQELVYGTLREYRSLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + +L   L +       +L + + Q+L L + D+ VV   VE  K+ +     + L 
Sbjct: 56  FLHNRLLHQPLDKNPLPA-IILNLGIYQLLRLTLGDHGVVHETVELCKKLRCPA-VSGLT 113

Query: 125 NSILRRVSREKIELLQR--IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           N++LRRV RE+   LQ         IP W     +     +  +        P+ + + +
Sbjct: 114 NAVLRRVQRERSACLQILEENKARNIPAWLLPAYQKDGDVDAFIM-----RPPMTVRVRL 168

Query: 183 KFDIETWAHKLNA---VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                 W  +  A   +               +  LP FA G   VQDA A     L   
Sbjct: 169 PQTATQWIAQHGANARLNPLHQQAVTFNQAIGVEDLPDFASGGVSVQDAMAQWAATLLQP 228

Query: 240 LNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED--IIE 295
                +LD CAAPGGKT     +     + ALD +  RLE+++ NL RLHL A       
Sbjct: 229 RAGERILDACAAPGGKTGHLLELAPQCTLIALDHAADRLERVQENLKRLHLNAHCQTADA 288

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D   +     FDA+L+DAPCS +G IRRHPD+ W R   D+ +    Q +LL      +
Sbjct: 289 ADLASWYDGHAFDAILLDAPCSGSGVIRRHPDIAWLRSDSDLKQLPKTQYRLLDTLWQTL 348

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG ++++ CS+  +++++++++ L +     +L P+              +  GW+  
Sbjct: 349 KIGGRLLYTTCSILPRENQQLIEQFLYTH-REAQLRPITLPKGLD-------TGHGWLH- 399

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                      + G DGFF   L +
Sbjct: 400 --------YPDADG-DGFFYALLEK 415


>gi|312127904|ref|YP_003992778.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777923|gb|ADQ07409.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 410

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 184/438 (42%), Gaps = 58/438 (13%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88
           +D        +L +++D+ L   +V+  LR+   I+  ++FV    +      +  +LRV
Sbjct: 1   MDSLMEKFHQKLKNEKDRALFVELVHGVLRYKSLIEYYINFVAKKGVK--DKRILNILRV 58

Query: 89  SVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE---------- 137
           +  ++L+L+ + +YA V+ A E A +   + H    VN+ILR + R K +          
Sbjct: 59  ATYELLFLEKIPEYATVNEACEIASKI--SPHLKAFVNAILRNIIRNKNQIEESLERIKD 116

Query: 138 --LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHK 192
                 I+     P +  + LE  YG E+ L I +   +     + +     D+ T   +
Sbjct: 117 VDYKSYISIKLSYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKKTDVSTLTQE 176

Query: 193 LNAVMLPTGGI-----RLKELPESIVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSV 245
           L                +  L  +I     + EG ++ QD ++S+              V
Sbjct: 177 LEKNGFKYEINSHNNEIIHVLKGNIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKV 236

Query: 246 LDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           +DLCAAPGGK      V    V A D+++ +L+ LR N+ RL      + + DA  + P 
Sbjct: 237 IDLCAAPGGKTFNCAEVIDGFVVACDINEHKLDILRENILRLGFDNIIVAKSDAEVFNPD 296

Query: 305 K--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD V+ D PC+  G IR+ PD+ W +   D+      Q ++L     ++K GG++ 
Sbjct: 297 FAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDVENLHELQVRILDNAAGYLKKGGLLF 356

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C+L ++++EE V K L        LV                     I I PD    
Sbjct: 357 YSTCTLSRKENEETVLKFLDKH-RDFSLVSQ-------------------ITIFPDEF-- 394

Query: 423 IDGVSSGMDGFFAVALRR 440
                   DGFF   LR+
Sbjct: 395 ------NCDGFFISKLRK 406


>gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           lacrimalis 315-B]
 gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           lacrimalis 315-B]
          Length = 430

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 194/456 (42%), Gaps = 49/456 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  ++  V  K   L   L++         +S RD   ++ I    +R    +D 
Sbjct: 3   NIRQKALFIIDNVYNKGAFLEEQLNII----KQSNISDRDFTFIKNITTGVIRNRTYLDY 58

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           V+         +    +  +L +++ Q  +LD + +Y++VD +V+ AK    N+  +  V
Sbjct: 59  VIKINSKIRFKKIHKIIAIILEMAIYQYYFLDKIPNYSIVDESVKLAK-LYGNKGSSSFV 117

Query: 125 NSILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177
           N+ILR +  +  E+++        +     P+++ +     YG E    +  A       
Sbjct: 118 NAILRNIVSKDKEVVKIEDSIENLSVYYSHPKFYTKYFYENYGVELTKNLLKANNQEPDF 177

Query: 178 -IDLTVKFDIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASA 230
            I +      +   +KL                 + E P++I     F EG ++ QD S+
Sbjct: 178 VIRVNTLKTKKDHLYKLLKDENFNVIDGLVPDSLIIENPKNIFDTQAFREGFFYAQDFSS 237

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
               Q+     N ++LDLCAAPGGK+     ++ +  ++ A D S  +L+ ++ N  RL 
Sbjct: 238 IKVSQILNPKKNSTILDLCAAPGGKSTHLGAILENTGQIVACDKSLYKLDLIKDNAKRLG 297

Query: 288 LYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +    +   D   ++   +  FD  LVDAPCS+ G  R+ PD+ W R  +DI   A  Q+
Sbjct: 298 VSNIKVSINDASKYNNDFEDKFDYCLVDAPCSAIGLYRKKPDIKWNRSLEDIKNLAQIQK 357

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            ++     +VK GG++++S CSL   ++E V+++ L  +     L               
Sbjct: 358 NIINNAGRYVKKGGVLIYSTCSLSYSENEGVIKEFLDRNKNYKIL--------------- 402

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  +  +++ P             DGF    L+RL
Sbjct: 403 TIEGKDILKLFP---------FDNYDGFSICKLQRL 429


>gi|113954299|ref|YP_729912.1| sun protein [Synechococcus sp. CC9311]
 gi|113881650|gb|ABI46608.1| sun protein [Synechococcus sp. CC9311]
          Length = 449

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 111/465 (23%), Positives = 187/465 (40%), Gaps = 61/465 (13%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR ++  +L  V          L+     +    LS  D+ L   +    +R+  
Sbjct: 12  KIGLPARRLALEVLEAV-AAGAYADVALERALRQNP---LSPADRGLATELAYGCIRWRQ 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +D  LD +      ++   L+ LL + + Q+L +  +   A VD  VE AKR + ++  
Sbjct: 68  WLDGWLDRLGKVPAHKQPPRLRWLLHLGLYQVLRMQRIPASAAVDTTVELAKRQRLSK-L 126

Query: 121 AKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           + +VN +LR                +  +R+A    +P WF E L ++ G ++   ++ A
Sbjct: 127 SPVVNGVLRSALRAKEAGETLPVPDQSAERLALCHSLPVWFAESLLSWSGPDKAERVAVA 186

Query: 172 CISPLYIDLTV---KFDIETWAHKLNAVML-------PTGGIRLKELPESIVSLPGFAEG 221
           C     +DL V       +  A +L A  +          G+++      +   PGF +G
Sbjct: 187 CNQVPPLDLRVNRLCSSPDLVAAELAAAGVPTKPIDACPDGLQVLAPAGDLRRWPGFEQG 246

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            W VQD SA     L        +LD CAAPGGK   L   +  G ++ A+D S  RL++
Sbjct: 247 HWSVQDRSAQGVAPLLAPRPGDRILDACAAPGGKATHLAELMGDGGEIWAVDRSAGRLKR 306

Query: 279 LRCNLDRLHLYAEDIIEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  N  RL   +   +  D           +  F  +L+D PCS  GT+ RHPD  W   
Sbjct: 307 VAANAARLGCGSIHALAADATNLLEQQPEWRGFFQRILLDVPCSGLGTLSRHPDARWRVT 366

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
              + +    Q +LL   +  + PGG +V++ C++   ++   V K+L+           
Sbjct: 367 PATVEELLPLQAQLLAAMLPLLAPGGRLVYATCTIHPAENLAQVNKLLQDHAD------- 419

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                           E   +  PD          G DGF+   +
Sbjct: 420 -------------FQLESEQQRWPD--------PEGGDGFYTAVI 443


>gi|313111462|ref|ZP_07797263.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
           aeruginosa 39016]
 gi|310883765|gb|EFQ42359.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
           aeruginosa 39016]
          Length = 434

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 201/455 (44%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL +   L+ V+  R SL+C L           ++ RD+ L + +     R+ PR+ 
Sbjct: 1   MNPRLAACQALAAVLAGRASLSCALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          +  LL + + Q+LY  +  +A +   V  A + K+      ++
Sbjct: 56  ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      E+ +  +     P W  + L+  +  E++ A+  A  +   + L
Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            V     + + +  +L    +                P  +  LPGFAEG   VQD +A 
Sbjct: 174 RVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPCDVRELPGFAEGRVSVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288
           +  +L  +     VLD C APGGKT  L+ +     +V A+D+ + RL ++R NL RL L
Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A           ++   K F  +L+DAPCS+TG IRRHPD+   R  +DI   A  Q +
Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GG+++++ CS+   ++ + +   L  +P   EL          +     
Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      ++ P +         G DGF+   L ++
Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431


>gi|256026704|ref|ZP_05440538.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
 gi|289764700|ref|ZP_06524078.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
 gi|289716255|gb|EFD80267.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
          Length = 435

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 201/452 (44%), Gaps = 37/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN + ++ +L+S V  K       L+  +       ++ +++  +  I    +R    +D
Sbjct: 1   MNVKQIAINLISQVD-KGAYSNIALNETFK---TLDINSKEKAFITEIFYGVIRNKKFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ QI ++D  +  +V  A E  K+       +K +
Sbjct: 57  YIIERYTK---EIKKEWIRNLLRISIYQITFMDSDNKGIVWEATELTKKKYGMT-ISKFI 112

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K       +  +    +  IP+WF + LE  YG + +     +     Y+
Sbjct: 113 NGTLRNYLRNKDTELKRLDDEKNYEVLYSIPKWFYDILEKQYGDKNLKQAITSLKKVPYL 172

Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            + V        + E +  + +  ++             I+    F  G    QDAS+ +
Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIIISEEFKTGKIIAQDASSYL 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +  G L+N  VLD+CAAPGGKTA   + + +  ++ A+D+ + +++ +  N+ +L + 
Sbjct: 233 AAKNLGVLSNELVLDICAAPGGKTAVLAEQMENKGEIIAIDIHQHKIKLIETNMKKLGID 292

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I MD        + FD +LVD PCS  G IR+ P++L++++ ++I + A  Q ++L
Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V+S C++  +++ + ++K L+               +   +++    
Sbjct: 353 NSAADILKDGGELVYSTCTITDKENTDNIEKFLKERKEFKV-----EKLYIPENVSGDYD 407

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G           I+     MD F+ + L++
Sbjct: 408 KLGGF--------CINYKEEIMDNFYIIKLKK 431


>gi|19703658|ref|NP_603220.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|19713776|gb|AAL94519.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 435

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 197/452 (43%), Gaps = 37/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN + V+ +L+S V  +       L+  +       ++ +++  +  I    +R    +D
Sbjct: 1   MNIKKVAINLISQVD-RGAYSNIALNETFK---TLNVNSKEKAFITEIFYGVIRNKKFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ QI ++D  D  VV    E AK+       +K +
Sbjct: 57  YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDDKGVVWEGTELAKKKYG-IPISKFI 112

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K          +    +  IP+WF + LE  YG   +     +     Y+
Sbjct: 113 NGTLRNYLRNKDLELKKLYDEKNYEVLYSIPKWFYDILEKQYGDNNLKQAITSLKKIPYL 172

Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            + V        + E +  + +  ++             I++   F  G    QDAS+ +
Sbjct: 173 SVRVNKLKYSEEEFEEFLKERDIQIIKKIDTVYYVNSGLIINSEEFKTGKIIAQDASSYL 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +    + N  VLD+CAAPGGKTA   + + +  ++ A+D+ + +++ +  N+ +L + 
Sbjct: 233 AAKNLDAMPNELVLDICAAPGGKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRID 292

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I MD        + FD +LVD PCS  G IR+ P++L++++ +++ + A  Q ++L
Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENVEELAKLQLEIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++S C++  +++   ++K L           +   Y     +    S
Sbjct: 353 NSAADILKDGGELIYSTCTITDEENTNNIKKFLEERKEF----KVEKLYIPKNVLGDYDS 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G+          I+     MD F+ + L++
Sbjct: 409 LGGF---------CINYKEEIMDNFYIIKLKK 431


>gi|145594413|ref|YP_001158710.1| Fmu (Sun) domain-containing protein [Salinispora tropica CNB-440]
 gi|145303750|gb|ABP54332.1| Fmu (Sun) domain protein [Salinispora tropica CNB-440]
          Length = 509

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 101/462 (21%), Positives = 164/462 (35%), Gaps = 44/462 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +   ++ V R       +L     D     L  RD      +   TLR L  +DA+
Sbjct: 63  PRHAAYQAVAAVHRDDAYANLVLPAILRD---AGLVGRDAAFATELTYGTLRRLGTLDAI 119

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L       + R    ++  LR+   Q+L+  V  +A V   V+  +            N+
Sbjct: 120 LTDAAGRDVARIDPPVRDALRLGAYQLLHTRVPAHAAVSATVDLVRSV--GPGATGFANA 177

Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDA 171
           +LR V+   ++                 +A     P+W         G +      +   
Sbjct: 178 VLREVASRDVDAWVARLAPPLETDPIGHLALAYSHPQWIVRAFAEALGGDLGETTRLLIE 237

Query: 172 CISPLYIDLTVKFDIET---WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                 + L  +         A ++           +     +   LP   EG   VQD 
Sbjct: 238 DNERPPVHLCARPGRADPVALADEVGGAPGAFSPYAVYSGGGAPGDLPALTEGRAHVQDE 297

Query: 229 SASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLR 280
            + +             +   LDLCA PGGK     A     GA++TA++VS+ R   + 
Sbjct: 298 GSQLVADALTVAPLDGPDGRWLDLCAGPGGKSGLLGAVAAQRGARLTAVEVSEHRARLVG 357

Query: 281 CNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
                L +     D   +       +  FD  LVDAPC+  G++RR P+  W R   D+ 
Sbjct: 358 QATRDLPVTVLNTDGRTVGETPKLAEGHFDRALVDAPCTGLGSLRRRPESRWRRQPSDLP 417

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                QR+LL  G+  V+PGG+V +  CS    ++   V +  R + +PV+ V       
Sbjct: 418 ALTRLQRELLSAGLRAVRPGGLVGYVTCSPHVVETHVTVTEAARRAGVPVDFVDARPLLP 477

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           K +     L     +++ P           G D  F   LRR
Sbjct: 478 KGMP---GLGDGPTVQLWPH--------RHGTDAMFLAVLRR 508


>gi|301063983|ref|ZP_07204448.1| ribosomal RNA small subunit methyltransferase B [delta
           proteobacterium NaphS2]
 gi|300441894|gb|EFK06194.1| ribosomal RNA small subunit methyltransferase B [delta
           proteobacterium NaphS2]
          Length = 447

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 113/460 (24%), Positives = 204/460 (44%), Gaps = 39/460 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++   L+ V          L+  +  +    +S+RD+     +V   LR+  R+D +
Sbjct: 2   SRNLALKSLNSVTNAPGGAERRLEFLFSKNPH--ISERDRAFAVHLVQGVLRWQIRLDWI 59

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  +LR+++ QI++LD V D A V+ AV+QA + K  +H A+ VN
Sbjct: 60  LKQYVRFPFGKIDPEVLDILRLALFQIIFLDRVPDSAAVNEAVKQADK-KGRKHVARFVN 118

Query: 126 SILRRVS---------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            ILR++            + +     +     P W  ++     G +  L + +      
Sbjct: 119 GILRQICREKGQLPYPHSEKQRDFYRSVYHAYPMWLVKKWTRELGPDMALRLMETGNQTP 178

Query: 177 YIDLTVKF---DIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            + +         E    +L        AV     GI L  +  S+  L  F EG + VQ
Sbjct: 179 RLVVRTNTLRNTREDLLERLEKENIEARAVPYAPEGIELTRVGGSVSRLRSFKEGRFQVQ 238

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
             +A I  +L     +  VLD+CA  GGK+  +   +     + ALD S  RL  L+ N 
Sbjct: 239 GEAAQICARLLSPGKSHRVLDMCAGLGGKSTHMAQLMGDRGWILALDTSIPRLRGLKRNT 298

Query: 284 DRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +RL + +   +  DA     C + +F   +VD+PCS  G I +HPD   T+  DDI + A
Sbjct: 299 ERLGIRSISPVVADATASLSCFRSVFHKSMVDSPCSGLGVISKHPDTKLTKKEDDIKRLA 358

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q+ +L +    +  GG +++  C++ ++++EEVV+ +LR +     ++  +       
Sbjct: 359 MVQKSILFRSCEKLAAGGEMLYVTCTISEEENEEVVESILRKNN---RIIFQDLRQRIPA 415

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++  G+ +  P +         GM+GFFA   ++L
Sbjct: 416 WGFDLVNDNGFFKTFPHV--------HGMEGFFAALFKKL 447


>gi|256958399|ref|ZP_05562570.1| fmu family protein [Enterococcus faecalis DS5]
 gi|257078290|ref|ZP_05572651.1| fmu [Enterococcus faecalis JH1]
 gi|294779981|ref|ZP_06745361.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis PC1.1]
 gi|307270563|ref|ZP_07551861.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX4248]
 gi|256948895|gb|EEU65527.1| fmu family protein [Enterococcus faecalis DS5]
 gi|256986320|gb|EEU73622.1| fmu [Enterococcus faecalis JH1]
 gi|294452962|gb|EFG21384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis PC1.1]
 gi|306513144|gb|EFM81778.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX4248]
 gi|315034823|gb|EFT46755.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
           faecalis TX0027]
          Length = 459

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDSVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            N  RLH+        +      +  P + FD +LVDAPCS  G +RR PD+ + +  +D
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q ++L      +K  GI+V+S C++  ++++EVV   L   P   ++  + + 
Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITSEENQEVVAAFLAKHPEFEKIEIVANE 422

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +      A+  E  + + P             DGFF   +R++   +
Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457


>gi|260495441|ref|ZP_05815567.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_33]
 gi|260196978|gb|EEW94499.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_33]
          Length = 435

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 199/452 (44%), Gaps = 37/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN + V+ +L+S V  K       L+  +       ++ +++  +  I    LR    +D
Sbjct: 1   MNVKQVAINLISQVD-KGAYSNIALNETFK---TLDINSKEKTFITEIFYGVLRNKKFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ QI +++  D  VV  A E  K+       +K +
Sbjct: 57  YIIERYTK---EIKKEWIRNLLRISIYQITFMNSDDKGVVWEATELVKKKYGMT-ISKFI 112

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K       +  +    +  IP+WF + LE  YG   +     +     Y+
Sbjct: 113 NGTLRNYLRNKDTELKRLDDEKNYEVLYSIPKWFYDILEKQYGDNNLKKAITSLKKIPYL 172

Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            + V        + E +  + +  ++             I++   F  G    QDAS+ +
Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIINSEEFKTGKIIAQDASSYL 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +    + N  VLD+CAAPGGKTA   + + +  ++ A+D+ + +++ +  N+ +L + 
Sbjct: 233 AAKNLSVMPNELVLDICAAPGGKTAVLAEQMENKGEIIAIDIHQHKIKLIETNMKKLGID 292

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I MD        + FD +LVD PCS  G IR+ P++L++++ ++I + A  Q ++L
Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V+S C++  +++ + ++K L+               +   +++    
Sbjct: 353 NSAADILKNGGELVYSTCTITDKENTDNIEKFLKERKEFKV-----EKLYIPENISGDYD 407

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G           I+     MD F+ + L++
Sbjct: 408 KLGGF--------CINYKEEIMDNFYIIKLKK 431


>gi|323142778|ref|ZP_08077491.1| ribosomal RNA small subunit methyltransferase B [Succinatimonas
           hippei YIT 12066]
 gi|322417423|gb|EFY08044.1| ribosomal RNA small subunit methyltransferase B [Succinatimonas
           hippei YIT 12066]
          Length = 443

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 122/450 (27%), Positives = 196/450 (43%), Gaps = 40/450 (8%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G  +R  ++ +L+ V    +SL+ L+     +     L  RD+ LV  IV+ TLR    +
Sbjct: 19  GSQSRAAAAKILAGVE-TGLSLSDLMPRFTAE-----LDLRDRALVSEIVHGTLRHRRLL 72

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +  L  +L   L  K   +  LL  ++ QI+++    +AVV   V  A    + + F  +
Sbjct: 73  NLSLHPLLDHKLSSKYREVNTLLLSAIYQIVFMRTPPHAVVASTVG-ACALCKCQSFTGM 131

Query: 124 VNSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           VN++LRR  RE   ++     A     P+W   +++N YG ++  AI  A      + L 
Sbjct: 132 VNAVLRRFLREGAHLQHSTEEAIEFSFPDWLYNKIKNAYG-DKTKAILKASNEHAPMWLR 190

Query: 182 VKFDI---ETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASASI 232
           V+      + +   L    +             +        LP F  G   VQD +A +
Sbjct: 191 VENSKIGTDDYLVLLEKCDIFAVRTPFCSSALQLEEPVITEKLPLFKRGRVSVQDLAAQL 250

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L      + VLD C+APGGK+A ++      ++TALD  ++RL   + NL RL   A
Sbjct: 251 AAPLLDLKPQMRVLDTCSAPGGKSAHILDLEPTVELTALDSDEKRLASAKENLARLQRNA 310

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
              +         +  FD +LVDAPCS TG IRRHPD+ W R   DI      Q K+L  
Sbjct: 311 VFKMLDAQDLSSLEGEFDRILVDAPCSGTGVIRRHPDIKWLRREGDIANLTAIQAKILDS 370

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             S +K GGI++++ CS+  +++ E ++  L       +L+P N                
Sbjct: 371 AFSKLKKGGILLYTTCSILPEENSEQIEAFLSRH-ADAKLLPFNIFGQSG---------- 419

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G  +  P   +         DGFF   + +
Sbjct: 420 GTFQHLPGDDDA--------DGFFYARMIK 441


>gi|302872122|ref|YP_003840758.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574981|gb|ADL42772.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 423

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 109/454 (24%), Positives = 189/454 (41%), Gaps = 63/454 (13%)

Query: 14  LLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L  V +K+ S +  L++  +        +++D+ L   +V+  LR+   ID  ++FV  
Sbjct: 2   TLFEVEKKKFSGMDSLMEKFHQKLK----NEKDRALFVELVHGVLRYKNLIDYYINFVTK 57

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             +      +  +LRV+  ++L+L+ + +YA V+ A E A +   + H    VN+ILR +
Sbjct: 58  KGVK--DKRILNILRVATYELLFLEKIPEYATVNEACEVASKI--SPHLKAFVNAILRNI 113

Query: 132 SREKIE------------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            R K +                I+     P +  + LE  YG E+ L I +   +     
Sbjct: 114 IRNKNQIQESLEKIKDVDYKSYISIKLSYPIFLIDYLEESYGFEKTLKILEFLNTKPPQS 173

Query: 180 LTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
           + +                +     +       +  L  +I     + +G ++ QD ++S
Sbjct: 174 IKINTKKTDVKVLIQELDKNGFEYEINFYNQEVIYVLKGNIKETELYKKGYFYFQDLASS 233

Query: 232 IPV--QLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           + V            V+DLCAAPGGK      V    V A D++  +L+ LR N+ RL  
Sbjct: 234 LVVKLNQEDFKEARKVIDLCAAPGGKTFNCAEVIDGFVVACDINDHKLDVLRENILRLGF 293

Query: 289 YAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
               + + DA  + P     FD V+ D PC+  G IR+ PD+ W +   DI      Q +
Sbjct: 294 DNIIVAKSDAEVFNPDFAGRFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVR 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    S++K GG++ +S C+L ++++E  V K L        LV   +           
Sbjct: 354 ILDNAASYLKRGGLLFYSTCTLGRKENEGTVLKFLDKHK-DFSLVSQTT----------- 401

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   I PD  +         DGF+   LR+
Sbjct: 402 --------IFPDEFK--------CDGFYIAKLRK 419


>gi|255325042|ref|ZP_05366148.1| Fmu protein [Corynebacterium tuberculostearicum SK141]
 gi|255297607|gb|EET76918.1| Fmu protein [Corynebacterium tuberculostearicum SK141]
          Length = 516

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 101/456 (22%), Positives = 160/456 (35%), Gaps = 37/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R V+  ++  V         +L         + L  RD      I   TLR L  +DA
Sbjct: 78  APRSVAFDVVRRVSDDDAFANLILPKALRK---QKLKGRDAAFATEITYGTLRTLGVVDA 134

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L     ++   LR+   Q+LY  V  +A VD  V   +            N
Sbjct: 135 VIAECSSRGLEAISPAVVDALRLGTYQVLYTRVEPHAAVDTTVRLVEA-AGEVKAKGFAN 193

Query: 126 SILRRVSREKIELLQR----------IAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            I+R ++R   +              IA     P W  E      G   +     A    
Sbjct: 194 GIMRTITRTPAKAWLDKLAPQGEIAGIAFKHAHPTWIAESFSRVLGLGELETALAADSDR 253

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             + L  +      E  A              +         L    +G+  VQD  + +
Sbjct: 254 PSVHLVARPGEISAEELALMTGNEEGRYSPYAVYMESGDPGQLEPVRQGLAAVQDEGSQL 313

Query: 233 PVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286
             +               LDLCA PGGK A +       +A  D  +    +       +
Sbjct: 314 IARAVCEAPLEGEDTGRWLDLCAGPGGKAALMGALARIDSAHVDAVEVSPHRAALIEKTV 373

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                D+   D  +    + FD VLVDAPCS  G +RR P+  W +   DI +    Q +
Sbjct: 374 SDLPVDVRVADGRNPGVGEGFDRVLVDAPCSGLGALRRRPEARWRKSEADIAELNQLQFE 433

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL   ++ V+PGG+V++S CS D +++  +V + +R   +  E +  ++      D+   
Sbjct: 434 LLSSALNLVRPGGVVIYSTCSPDLRETRGIVDRAVRE--LGAEELDAHALIPDMGDVGH- 490

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              E  +++ P           G D  F  ALRR  
Sbjct: 491 ---EKSVQMWPH--------RHGTDAMFFAALRRAA 515


>gi|209542805|ref|YP_002275034.1| Fmu (Sun) domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530482|gb|ACI50419.1| Fmu (Sun) domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 438

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 147/437 (33%), Positives = 218/437 (49%), Gaps = 24/437 (5%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  ++  V+  R  L   LD            +     + A V   LR +     
Sbjct: 23  PTRDIAFDIVQGVLEHRRMLETSLDQSAAARDADARDRAAAHRLAATV---LRHMGTAGM 79

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL+  L    P     ++ +L + VAQIL+LD   +A V  AV  A+R +    FA LVN
Sbjct: 80  VLEPFLKKEPP---LPVRTVLLIGVAQILFLDTPAHAAVGTAVSLARR-RGLVPFAGLVN 135

Query: 126 SILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           ++LRRV++     L+ +      +P W      +         +++A      +DLT++ 
Sbjct: 136 AVLRRVAQAGAGALEGLDQARLDVPPWLWGAWGSL-----ARPVAEALGQEAPLDLTLRP 190

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            +         VMLPTG +RL      +  LPG+A+G +WVQDA+A++P +L        
Sbjct: 191 GLPEAERPPGGVMLPTGTLRLPAGT-RVADLPGYAQGAFWVQDAAAALPARLLAPRAGER 249

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP 303
           + DLCAAPGGKTAQL V+GA+VTA++    RL +L+ NLDRL L     +++ DA  + P
Sbjct: 250 IADLCAAPGGKTAQLAVAGAEVTAIEREPGRLARLKENLDRLGLADRVQLVQGDAATWRP 309

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
               DAVL+DAPCS+TGT RRHPDVLW +   D+      Q +LL      ++PGG +V+
Sbjct: 310 DAPLDAVLLDAPCSATGTARRHPDVLWIKRPRDLTALTEGQDRLLAAARDMLRPGGRLVY 369

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           + CSL  ++  E V+         + L P      +   +  AL+ EGW+R  P +    
Sbjct: 370 AVCSLQPEEGPERVRAA-----EAMGLEPDPFTAEELAVLPEALTKEGWLRTHPGLW--- 421

Query: 424 DGVSSGMDGFFAVALRR 440
                GMDGFFA   RR
Sbjct: 422 -TEQGGMDGFFAARFRR 437


>gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 423

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 193/454 (42%), Gaps = 53/454 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN+R ++  +L  V   +     LL+     +    L+Q+D+  V  +V+  +     +D
Sbjct: 1   MNSRSIAFDILKKVFVNKAYSNVLLNKISKKN----LNQQDKDFVFNLVHGVISNKIHLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L  ++   + +    LQ +L +S+ Q++YL+ + +YA+V+ +V   K    ++  A  
Sbjct: 57  YLLAKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 112

Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+IL +  R K + L+            +          L   Y KE V  I       
Sbjct: 113 INAILNKFLRFKDKYLEINLDNKDLELCILHSFSYELYLMLIKQYDKEIVNQIVVNNHQI 172

Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
             + + V     T     N      ++  T         ++I++   +  G   +QD ++
Sbjct: 173 PKLYIRVNTLKITSDQLFNKYKDVYLLEKTNVNDCLIANKTIINSDLYKNGFITIQDKAS 232

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  Q+     N  VLD+C+APGGK   L +   +   + A ++++ +++ ++ N++RL+
Sbjct: 233 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVANEINESKIKLIKENINRLN 292

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +  MDA     K+ FD +L+DAPCS  G  +R P++    D   +      Q +L
Sbjct: 293 CLNISLTNMDARKIKQKQEFDYILLDAPCSGFGVFKRKPEIKLRFDQTQVNNIINLQEEL 352

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K  G +V+S C++++ +++  + K L      ++L                 
Sbjct: 353 LESAYYNLKNNGEMVYSTCTINQDENQNQINKFLNKHKDMIKL----------------- 395

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                        ++I G     DGF+   L++L
Sbjct: 396 -----------YEQQIFGFEENTDGFYICKLKKL 418


>gi|55821413|ref|YP_139855.1| RNA-binding protein [Streptococcus thermophilus LMG 18311]
 gi|55823338|ref|YP_141779.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066]
 gi|55737398|gb|AAV61040.1| RNA-binding protein [Streptococcus thermophilus LMG 18311]
 gi|55739323|gb|AAV62964.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066]
          Length = 443

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 36/452 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V ++       L+    +S    L+ +D+ LV  IV  T+     ++ +
Sbjct: 12  ARGQALEVLEEVFQEGAYSNIALNARLSNS---CLTDKDKALVTEIVYGTVARKITLEWI 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  V+     + +  +  LL +S+ Q+ YLD +  +AVV+ AV  AK     +   KLVN
Sbjct: 69  LAHVIE-DRDKLEAWVYDLLLLSLYQLAYLDKIPSHAVVNDAVSIAKNRGNKKGAEKLVN 127

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+          +   + +R +    +P W  ++L   YG+ER LAI  +    +  
Sbjct: 128 AVLRKLSSQPLPDPSKIKRVNKRYSVQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKA 187

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T    +E  A    A       + L +          F EG+  +QD ++ +    
Sbjct: 188 SVRVTDVSRMEEIAEATGAERSDLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 247

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD CAAPGGKT  +   ++   VTALD+   +L  ++ N  RL L      
Sbjct: 248 LAIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLALIKENAQRLGLADKVKT 307

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D        P   FD +LVDAPCS  G IRR PD+ + +D  D       Q  +L  
Sbjct: 308 QKLDARQVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDILSS 367

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  ++++EV+Q  L S P   ++   +      ++  +A++PE
Sbjct: 368 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHPDFEQVALDHPCKDIVVNGYLAITPE 427

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            ++                 DGFF   LR+ +
Sbjct: 428 QYL----------------TDGFFIAQLRKKV 443


>gi|116628135|ref|YP_820754.1| RNA-binding protein [Streptococcus thermophilus LMD-9]
 gi|116101412|gb|ABJ66558.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus thermophilus
           LMD-9]
          Length = 442

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 36/452 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V ++       L+    +S    L+ +D+ LV  IV  T+     ++ +
Sbjct: 11  ARGQALEVLEEVFQEGAYSNIALNARLSNS---CLTDKDKALVTEIVYGTVARKITLEWI 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  V+     + +  +  LL +S+ Q+ YLD +  +AVV+ AV  AK     +   KLVN
Sbjct: 68  LAHVIE-DRDKLEAWVYDLLLLSLYQLAYLDKIPSHAVVNDAVSIAKNRGNKKGAEKLVN 126

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+          +   + +R +    +P W  ++L   YG+ER LAI  +    +  
Sbjct: 127 AVLRKLSSQPLPDPSKIKRVNKRYSVQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKA 186

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T    +E  A    A       + L +          F EG+  +QD ++ +    
Sbjct: 187 SVRVTDVSRMEEIAEATGAERSDLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 246

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD CAAPGGKT  +   ++   VTALD+   +L  ++ N  RL L      
Sbjct: 247 LAIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLALIKENAQRLGLADKVKT 306

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D        P   FD +LVDAPCS  G IRR PD+ + +D  D       Q  +L  
Sbjct: 307 QKLDARQVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDILSS 366

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  ++++EV+Q  L S P   ++   +      ++  +A++PE
Sbjct: 367 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHPDFEQVALDHPCKDIVVNGYLAITPE 426

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            ++                 DGFF   LR+ +
Sbjct: 427 QYL----------------TDGFFIAQLRKKV 442


>gi|120403672|ref|YP_953501.1| Fmu (Sun) domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956490|gb|ABM13495.1| Fmu (Sun) domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 449

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 106/465 (22%), Positives = 168/465 (36%), Gaps = 44/465 (9%)

Query: 1   MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +  +L  V  +       L     D   R ++ RD      +   T R
Sbjct: 1   MKRKRLDPARQAAFDVLRAVSERDAYANLALPALLRD---RGITGRDAAFATELTYGTCR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
               +DAV+       + +    L  LLR+   Q+L   V D+A V   V+QA   + + 
Sbjct: 58  TRGLLDAVIAAAAGRPVDKIDPVLLDLLRLGSYQLLRTRVDDHAAVSTTVDQAG-IEFDS 116

Query: 119 HFAKLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKE 163
             A  VN +LR ++R                     +A +   P W  +   +       
Sbjct: 117 SRAGFVNGVLRTIARRDEASWVEELAPSATGDPIGHLAFVHAHPRWVAQAFADALGARAG 176

Query: 164 RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
            + A+  +  S   + L  +         A ++   +       +         L    E
Sbjct: 177 ELGALLASDDSRPEVHLVARPGALTAAELAEQVGGGVGRYSPYAVYLGEGDPGQLAAVRE 236

Query: 221 GVWWVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKR 274
           G   VQD  + +  +               LDLCA PGGKTA L   G  +   +   + 
Sbjct: 237 GTALVQDEGSQLVARALTLAPLVGPDGGRWLDLCAGPGGKTALLAALGAPEGVTVTAVEP 296

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
              +             +++ +D  +      FD VLVDAPC+  G +RR P+  W R  
Sbjct: 297 APRRADLVEQNTAGLPVEVVRVDGREPGLAPGFDRVLVDAPCTGLGALRRRPEARWRRQP 356

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D+   A  QR+LL   I   +PGG+V+++ CS    ++  VV   LR  P  V  +   
Sbjct: 357 GDVPPLAKLQRELLASAIRLTRPGGVVLYATCSPHLAETAGVVADALRRHP--VTALDTR 414

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             +  + D     S    +++ P           G D  FA ALR
Sbjct: 415 ELFEPATDTGDGTS----VQLWPH--------RHGTDAMFAAALR 447


>gi|312278741|gb|ADQ63398.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus
           thermophilus ND03]
          Length = 440

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 36/452 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V ++       L+    +S    L+ +D+ LV  IV  T+     ++ +
Sbjct: 9   ARGQALEVLEEVFQEGAYSNIALNARLSNS---CLTDKDKALVTEIVYGTVARKITLEWI 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  V+     + +  +  LL +S+ Q+ YLD +  +AVV+ AV  AK     +   KLVN
Sbjct: 66  LAHVIE-DRDKLEAWVYDLLLLSLYQLAYLDKIPSHAVVNDAVSIAKNRGNKKGAEKLVN 124

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+          +   + +R +    +P W  ++L   YG+ER LAI  +    +  
Sbjct: 125 AVLRKLSSQPLPDPSKIKRVNKRYSVQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T    +E  A    A       + L +          F EG+  +QD ++ +    
Sbjct: 185 SVRVTDVSRMEEIAEATGAERSDLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                   +LD CAAPGGKT  +   ++   VTALD+   +L  ++ N  RL L      
Sbjct: 245 LAIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLALIKENAQRLGLADKVKT 304

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D        P   FD +LVDAPCS  G IRR PD+ + +D  D       Q  +L  
Sbjct: 305 QKLDARQVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  ++++EV+Q  L S P   ++   +      ++  +A++PE
Sbjct: 365 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHPDFEQVALDHPCKDIVVNGYLAITPE 424

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            ++                 DGFF   LR+ +
Sbjct: 425 QYL----------------TDGFFIAQLRKKV 440


>gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [marine bacterium HP15]
          Length = 426

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 122/447 (27%), Positives = 193/447 (43%), Gaps = 39/447 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R +++ ++  V     SL+  L       A   L   ++ +++A+   T R+  R+D  L
Sbjct: 2   RAIAAGVMLSVE-NGQSLSQCLP-----PALNRLPANERPVLQALCYGTCRWFYRLDGEL 55

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  L   L +    +  L+ V++ Q+ +   A+YAV++  VE A R  +  H   LVN +
Sbjct: 56  NNRLKKPLRKPDRIIHHLMLVALFQLRFSQQANYAVLNETVE-ACRALDKPHLTGLVNGV 114

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---F 184
           LR   RE  +     A     P W  E+L + +  E    I DA  +   + L V    F
Sbjct: 115 LRAAEREGAQEPADDAARFSHPVWMVEKLRHNWP-ENWHHILDANNAQAPMTLRVNALRF 173

Query: 185 DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             + +   L    +     R          P  +  LP FA+G   VQD +A +   L  
Sbjct: 174 ARDEYLGLLAEAGIEAKATRFAPHGIQLATPVPVDRLPWFADGAVSVQDEAAQLCTTLMD 233

Query: 239 TLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DI 293
                 VLD CAAPGGKT    +     A+V A+D S  RL +++ NLDRL L A     
Sbjct: 234 LAPGQRVLDACAAPGGKTCAILESCGELAEVVAIDESADRLPRVQENLDRLDLNATLKQA 293

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                  +   + FD +L+D PCS++G IRRHPD+   R   DI   A  Q  LL    +
Sbjct: 294 DAAATDQWWDGEAFDRILLDVPCSASGVIRRHPDIKLLRRESDITPLAAIQLGLLDAMWA 353

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +KPGG +V++ CS+  Q++  ++Q+  +     + + P         +           
Sbjct: 354 ILKPGGRLVYATCSVFPQENHRIIQRFCKQQTDAILVEP---------EAQWGRDMGAGR 404

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++ PD            DGFF   L +
Sbjct: 405 QLLPD--------PDSHDGFFYAVLEK 423


>gi|71276447|ref|ZP_00652723.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Dixon]
 gi|71901280|ref|ZP_00683379.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Ann-1]
 gi|170730998|ref|YP_001776431.1| Sun protein [Xylella fastidiosa M12]
 gi|71162763|gb|EAO12489.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Dixon]
 gi|71728971|gb|EAO31103.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Ann-1]
 gi|167965791|gb|ACA12801.1| Sun protein [Xylella fastidiosa M12]
          Length = 429

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 197/452 (43%), Gaps = 37/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G+  R+V++ +L+ V+ +  SL   L              RD+ LV AI    LR  
Sbjct: 1   MSDGIAPRVVAARVLALVVDQGRSLKTELAAALPTLE----DVRDRALVEAICFAVLRRR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P  +A L   L   L R    L+ LL V  AQ+  L V  YA +   V+ A R     H 
Sbjct: 57  PVYEAALTRWLARPLGRGDAQLRGLLMVGFAQLDVLKVPPYAALSATVD-ACRVLGWPHR 115

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYID 179
              VN++LRR  RE++ ++   A     P W  ER+   +  +   +  +    +P+++ 
Sbjct: 116 VSFVNAVLRRAQRERLPVVSSDAAW---PRWLAERIRADWGEQAEAIFDASLKPAPMWLR 172

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           + +   D  T+  +L A  L      L            ++ LPGF  G   VQD SA  
Sbjct: 173 VNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSMPVLQLPGFQAGEVSVQDLSAQQ 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L     +  +LD CAAPGGK A          +TALDV  +RL ++    DR+H+ A
Sbjct: 233 VAALLSPAPHARLLDACAAPGGKAAHLLERAPTLCLTALDVDMQRLRRVAETCDRIHVKA 292

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   D   +   + FDAVL+DAPCS+TG +RR PDVL  R  +D++     Q +LL
Sbjct: 293 RLCVADATDLAAWWDGEAFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLPLLNIQSRLL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 ++PGG++V+  CS+ + +++  ++  L  +       P ++    +        
Sbjct: 353 DACWRTLRPGGVLVYVTCSVLRAENQAQLEAFLARTADACAEDPGDAYGQPA-------- 404

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     +  +      G DGFF   L +
Sbjct: 405 ---------GLGRQRLPGEQGGDGFFYARLIK 427


>gi|108799351|ref|YP_639548.1| Fmu (Sun) [Mycobacterium sp. MCS]
 gi|119868467|ref|YP_938419.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. KMS]
 gi|108769770|gb|ABG08492.1| Fmu (Sun) [Mycobacterium sp. MCS]
 gi|119694556|gb|ABL91629.1| Fmu (Sun) domain protein [Mycobacterium sp. KMS]
          Length = 455

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 167/460 (36%), Gaps = 42/460 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR V+  +L  V  +       L     +   R L  RD      +   T R   
Sbjct: 14  KPLDPARRVAFDVLRAVSERDAYANLALPALLNE---RGLDGRDAAFATELTYGTCRSRG 70

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +DAV++      + R    L  LLR+   Q+L   V  +A V   VEQA  + +    A
Sbjct: 71  LLDAVIEAAAGRPVDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTTVEQAGIEFDTAR-A 129

Query: 122 KLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVL 166
             VN +LR+++    +                 IA     P W  +   +        + 
Sbjct: 130 GFVNGVLRKIAGRDEQSWVAELAPPADTDPVGHIAFTHAHPRWVAQAFTDALGARAGELD 189

Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
           A+  +  +   + L  +      E  A  +   +       +         L    +G  
Sbjct: 190 ALLASDDARPLVHLAARPGVLSAEELAAAVGGELGRYSPYAVYLPGGDPGRLDPVRDGSA 249

Query: 224 WVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKL 279
            VQD  + +  +         +    LDLCA PGGKTA L           V        
Sbjct: 250 LVQDEGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTAMLAALAPGPLTA-VEPAPRRAE 308

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
               +   L    ++ +D  D   +  FD VLVDAPC+  G +RR P+  W R   D+  
Sbjct: 309 MVEENTRGLD-VTVLRVDGRDPGLEPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPG 367

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR+LL   I   +PGG+V+++ CS    ++  VV   +R  P  V  +   + +  
Sbjct: 368 LARLQRELLASAIRLTRPGGVVLYATCSPHLAETVGVVADAVRRQP--VTALDTRALFDP 425

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             D+        ++++ P           G D  FA AL+
Sbjct: 426 VDDLGDGP----YVQLWPH--------RHGTDAMFAAALQ 453


>gi|329938919|ref|ZP_08288293.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           griseoaurantiacus M045]
 gi|329301804|gb|EGG45697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           griseoaurantiacus M045]
          Length = 472

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/464 (21%), Positives = 162/464 (34%), Gaps = 42/464 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-FRLLSQRDQILVRAIVNVTLRFLPRID 64
             R ++   L  V  +      +L      +        RD  L   +V  TLR     D
Sbjct: 22  PVRFLAFEALRAVDERDAYANLVLPPLLRKAREQDGFDGRDAALATELVYGTLRRQGTYD 81

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+L   +   L      +  +L +   Q+L   +  +A V  +VE A+    +   AK V
Sbjct: 82  AILAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 140

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+V+R  ++               + +A +   P W    L +  G  R     + 
Sbjct: 141 NAVLRKVARHDLDGWLEQVAPPYDDDPEEHLAVVHSHPRWIVSALWDSLGGGRAGIEDLL 200

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWV 225
           +A      + L  +    T    L       G      +         ++    EG   V
Sbjct: 201 EADNERPEVTLVARPGRATAEELLREPAAEPGRWSPYAVRLTEGGEPGAVEAVREGRAGV 260

Query: 226 QDASASIPVQLFGTLN----NLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLE 277
           QD  + +             +   LD CA PGGK     A     GA + A +    R  
Sbjct: 261 QDEGSQLVALALANAPVEGRDERWLDGCAGPGGKAALLAALAAERGAALVAAEKQPHRAG 320

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            +   L       + +             FD VLVD PC+  G +RR P+  W R  +D+
Sbjct: 321 LVARALHGNPGPYQVVTADGTRPAWRPGTFDRVLVDVPCTGLGALRRRPEARWRRRPEDL 380

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
              A  QR LL   +  V+ GG+V ++ CS    ++  VV  VL+  P   E +      
Sbjct: 381 DGFAPLQRGLLEMALRSVRVGGVVGYATCSPHLAETRAVVTDVLKRQPG-FEQLDARPLL 439

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +         +++ P +         G D  +   LRR+
Sbjct: 440 PGVSLLGEGPD----VQLWPHL--------HGTDAMYLALLRRV 471


>gi|126435009|ref|YP_001070700.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. JLS]
 gi|126234809|gb|ABN98209.1| Fmu (Sun) domain protein [Mycobacterium sp. JLS]
          Length = 455

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 167/460 (36%), Gaps = 42/460 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR V+  +L  V  +       L     +   R L  RD      +   T R   
Sbjct: 14  KPLDPARRVAFDVLRAVSERDAYANLALPALLNE---RGLDGRDAAFATELTYGTCRSRG 70

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +DAV++      + R    L  LLR+   Q+L   V  +A V   VEQA  + +    A
Sbjct: 71  LLDAVIEAAAGRPVDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTTVEQAGIEFDTAR-A 129

Query: 122 KLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVL 166
             VN +LR+++    +                 IA     P W  +   +        + 
Sbjct: 130 GFVNGVLRKIAGRDEQSWVAELAPPADTDPVGHIAFTHAHPRWVAQAFTDALGARAGELD 189

Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
           A+  +  +   + L  +      E  A  +   +       +         L    +G  
Sbjct: 190 ALLASDDARPLVHLAARPGVLSAEELAAAVGGEVGRYSPYAVYLPGGDPGRLDPVRDGSA 249

Query: 224 WVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKL 279
            VQD  + +  +         +    LDLCA PGGKTA L           V        
Sbjct: 250 LVQDEGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTAMLAALAPGPLTA-VEPAPRRAE 308

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
               +   L    ++ +D  D   +  FD VLVDAPC+  G +RR P+  W R   D+  
Sbjct: 309 MVEENTRGLD-VTVLRVDGRDPGLEPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPG 367

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR+LL   I   +PGG+V+++ CS    ++  VV   +R  P  V  +   + +  
Sbjct: 368 LARLQRELLASAIRLTRPGGVVLYATCSPHLAETVGVVADAVRRQP--VTALDTRALFDP 425

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             D+        ++++ P           G D  FA AL+
Sbjct: 426 VDDLGDGP----YVQLWPH--------RHGTDAMFAAALQ 453


>gi|71898895|ref|ZP_00681062.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71731307|gb|EAO33371.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 429

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 127/452 (28%), Positives = 198/452 (43%), Gaps = 37/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G+  R+V++ +L+ V+ +  SL   L              RD+ LV AI    LR  
Sbjct: 1   MSDGIAPRVVAARVLALVVDQGRSLKTELAAALPTLE----DVRDRALVEAICFAVLRRR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P  +A L   L   L R    L+ LL V  AQ+  L V  YA +   V+ A R     H 
Sbjct: 57  PVYEAALTRWLARPLGRGDAQLRGLLMVGFAQLDVLKVPPYAALSATVD-ACRVLGWPHR 115

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYID 179
           A  VN++LRR  RE++ ++   A     P W  ER+   +  +   +  +    +P+++ 
Sbjct: 116 ASFVNAVLRRAQRERLPVVSSDAAW---PRWLAERIRADWGEQAEAIFDASLKPAPMWLR 172

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           + +   D  T+  +L A  L      L            ++ LPGF  G   VQD SA  
Sbjct: 173 VNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSMPVLQLPGFQAGEVSVQDLSAQQ 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L     +  +LD CAAPGGK A          +TALDV  +RL ++    DR+H+ A
Sbjct: 233 VAALLSPAPHARLLDACAAPGGKAAHLLERAPTLCLTALDVDMQRLRRVAETCDRIHVKA 292

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   D   +   + FDAVL+DAPCS+TG +RR PDVL  R  +D++     Q +LL
Sbjct: 293 RLCVADATDLAAWWDGEAFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLHLLNIQSRLL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 ++PGG++V+  CS+ + +++  ++  L  +       P ++    +        
Sbjct: 353 DACWRTLRPGGVLVYMTCSVLRAENQTQLEAFLARTTDACAEDPGDAYGQPA-------- 404

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     +  +      G DGFF   L +
Sbjct: 405 ---------GLGRQRLPGEQGGDGFFYARLIK 427


>gi|269795116|ref|YP_003314571.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542]
 gi|269097301|gb|ACZ21737.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542]
          Length = 505

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/466 (21%), Positives = 183/466 (39%), Gaps = 44/466 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           ARLV+  +L  V         +L         R +S RD      +   TLR   R DA+
Sbjct: 49  ARLVAFDVLREVADSDAYANLVLPPMLRS---RGISGRDAAFATELAYGTLRLRGRYDAI 105

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +   +   L +    +  +LR+   Q+L + V  +A V   V  A+        A+ VN+
Sbjct: 106 IGECVDRPLDKIDAPVLDVLRLGAHQLLGMRVPSHAAVSETVGLARDRVG-AGSAQFVNA 164

Query: 127 ILRRVSREKIELL------------QRIAGISIIPEWFKERLENF-----YGKERVLAIS 169
           +LR++SR ++E               +++ +   P+W    L +         + + ++ 
Sbjct: 165 VLRKISRTELEEWLETVEAAQPDEIAKMSVVDSHPQWITRALRDSLVGSGRPVDELASLL 224

Query: 170 DACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
           +A  +   + L  +  +   +    ++ +         +        ++P    G+  VQ
Sbjct: 225 EADNASPRVTLVARPGLVTQDELGEQVESRPGRLAPTAVVLDGSDPGAVPAVRSGLAGVQ 284

Query: 227 DASASIPVQLFGTLN----NLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRR--- 275
           D  + +    F        +   LD+CA PGGK     A     GA+V A +V   R   
Sbjct: 285 DEGSQLVTLAFTQAPVEGADARWLDMCAGPGGKAALLAAVAGTRGARVVANEVQPHRADL 344

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           +++    +    +    + +           +D VLVDAPC+  G +RR P+  W R   
Sbjct: 345 VDRALVAVPADSVERVQVWDGRDIGEQEPGAYDRVLVDAPCTGLGALRRRPESRWRRTPA 404

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP-IPVELVPLN 394
           D+   A  QR+LL   +  V+ GG+V +  CS    ++  VV  VL + P   VE++   
Sbjct: 405 DVKVLATLQRELLTSALHAVREGGVVGYVTCSPHLAETRAVVSDVLAALPEGFVEMLDAR 464

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   +     + L+    +++ P +         G D      LRR
Sbjct: 465 ALVTEIAGTDVPLAERLDVQLWPHL--------HGTDAMHLTLLRR 502


>gi|299143974|ref|ZP_07037054.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298518459|gb|EFI42198.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 440

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 102/470 (21%), Positives = 201/470 (42%), Gaps = 60/470 (12%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R  +  ++  V+ K   L   L +         + +RD  L+  I    ++  
Sbjct: 1   MKD---IRKKALFIIDNVLYKGAFLNEELLILSKS----KIDKRDYNLIVNITTGVVQNK 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             ++ ++       + +   ++  +L++ + QI +   + DY++++ +V  AK    N+ 
Sbjct: 54  LLLEHIVSKYSKIKIKKIHRTILTILQMGIYQIFFTSRIPDYSIINESVNLAK-IFGNQG 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAG---------------ISIIPEWFKERLENFYGKER 164
            A  VN +LR + R+K  + +                       P+++ + +    GK+ 
Sbjct: 113 SAGFVNGLLRNILRDKENIEKSEFWLNDVKETDYAEYLSIYYSHPKFYVDLILEEKGKDF 172

Query: 165 VLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSL 215
              +           + V      +E  A KL      T   +      + + PESI+  
Sbjct: 173 TKELLKCNNVQAPFTIRVNTLKCSVEDLAGKLKKRGFDTEKTKYSKNALIVKNPESILDS 232

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSK 273
             F EG +++QD ++ +  +         VLDLC+APGGK+  + +      + + D+S 
Sbjct: 233 FLFKEGYFYIQDEASMLVSEFTKFNEKAKVLDLCSAPGGKSFNIAMLNRDASIISCDISN 292

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT 331
           +++  +R N++RL +    I++ DA  Y       FD V+VDAPCS  G  RR P++ W 
Sbjct: 293 KKISLIRENMERLGIKNIKILKNDATIYNKTFYNLFDNVIVDAPCSGLGLYRRKPEIKWN 352

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
           R  +DI K    Q  ++     +VK GGI+ +S C++ ++++E+++ K L  +    E+ 
Sbjct: 353 RKPEDIEKLTKIQMNIINNASKYVKIGGIITYSTCTITREENEDIINKFLDENKN-FEIE 411

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            + ++                       + KI   +  MDGF    ++R+
Sbjct: 412 KIENS----------------------DILKIYTNTHNMDGFSIAKIKRI 439


>gi|146280416|ref|YP_001170569.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
           stutzeri A1501]
 gi|145568621|gb|ABP77727.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
           stutzeri A1501]
 gi|327478632|gb|AEA81942.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
           stutzeri DSM 4166]
          Length = 440

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 121/459 (26%), Positives = 203/459 (44%), Gaps = 41/459 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  LS V+  + SL   L    G      +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAARALSVVLSGKASLGSSLPEVLGK-----VDARDRGLTQELAFGTARWQPRLA 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + +L          ++ LL V + Q+L+  +  +A +   V    + K+      L+
Sbjct: 56  GLANKLLQKPFKAADRDVEALLLVGLYQLLHTRIPAHAAIGETVGCVDKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LRR  RE   LL  +    +     P W ++ L+  +      +  ++    P+ + 
Sbjct: 115 NAVLRRAQREGEALLAELEHDPVIRVAHPRWLQKALKAHWPEHWEAICAANNAHPPMMLR 174

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           +   +   + +  +L    +        E       P  +  LPGFAEG   VQD +A +
Sbjct: 175 VNRRQTSRDVYLTELQTAGIDAFPCEFSEDGIRLASPCDVQQLPGFAEGRVSVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+    ++    ALD+  +RL ++R NL+RL L 
Sbjct: 235 AAGLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAGLVALDLEPKRLARVRENLERLQLD 294

Query: 290 AE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           AE           +   K F  +L+DAPCS+TG IRRHPD+  TR  +DI   A  Q ++
Sbjct: 295 AELLAADARATAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQAEDIAPLAALQGEM 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++ GG+++++ CS+   ++ EV+   L  +P   EL          +     L
Sbjct: 355 LDALWPTLEVGGVLLYATCSVLPTENREVIGAFLARTPGAREL---------DLPAGFGL 405

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL-IQPK 445
           +     ++ P           G DGF+   L ++  QP+
Sbjct: 406 TQPHGRQLLPQ--------QDGHDGFYYAKLIKIAAQPR 436


>gi|196230011|ref|ZP_03128874.1| sun protein [Chthoniobacter flavus Ellin428]
 gi|196225608|gb|EDY20115.1| sun protein [Chthoniobacter flavus Ellin428]
          Length = 410

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 109/444 (24%), Positives = 177/444 (39%), Gaps = 44/444 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R      L    + +     +L      +  + L   D+          LR L R+D
Sbjct: 1   MNPRQSCVLALLEWEKGKYFSDEILHTSLEKNPMQPL---DRAFFMETFFGVLRNLSRLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++  +      R     + +LR+ + QI ++  A +A V+ +V    R +   + A L 
Sbjct: 58  FLIGQLREG---RIDPQTRAVLRLGLYQIFHMRTAPHAAVNESVALGGRARGLVN-AILR 113

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
            ++  + + E   L    A  +  PE+   R E  +G E    + +    P  + +    
Sbjct: 114 RALREKEALESDLLAASSAVRTSHPEFLIARWEEVFGPEATRILCEWNNEPADVHVRANG 173

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLP--GFAEGVWWVQDASASIPVQLFGTLNN 242
              T    L +         +  L   +  +P    A G+ +VQD S  +   L      
Sbjct: 174 LRVTVGELLRSSTSAM-PSPVHPLAIKVEHIPPSWIAMGLCYVQDPSTLLSCDLLAPQPG 232

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD CAAPGGKT  L   +    ++ A D+   R+ +LR NL RL +     I  D  
Sbjct: 233 ETVLDACAAPGGKTTYLAQLMHDQGRIIACDLYDSRVARLRENLKRLGVTIARAIRHDCM 292

Query: 300 DYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
              P      FD +LVDAPCS+TG IRR  DV W    +D ++    Q  LL +  + +K
Sbjct: 293 QAGPPLDPDSFDRILVDAPCSNTGVIRRRVDVRWRLTEEDFIRMPAQQLALLRRTATLLK 352

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S CSL+ ++++ +V+KV  + P                           +R  
Sbjct: 353 PGGTLVYSTCSLEPEENDLLVEKVCAAIPS--------------------------LRFV 386

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
                +       +DG FA    R
Sbjct: 387 --ESRRALPFVDRIDGAFAAKFVR 408


>gi|322516391|ref|ZP_08069316.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124]
 gi|322125124|gb|EFX96517.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124]
          Length = 442

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 198/452 (43%), Gaps = 36/452 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V ++       L+     S    L+ +D+ LV  IV  T+     ++ +
Sbjct: 11  ARGQALEVLEEVFQEGAYSNIALNAHLSKS---YLTDKDKALVTEIVYGTVARKITLEWI 67

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  V+     + +  +  LL +S+ Q+ YLD +  +AVV+ AV  AK     +   KLVN
Sbjct: 68  LAHVIE-DRDKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAKNRGNKKGAEKLVN 126

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+          E   + +R +    +P W  ++L + YG++R LAI  +    +  
Sbjct: 127 AVLRKLSSQPLPDPSEIKRVNKRYSVQYSLPVWLVKKLIDQYGEKRALAIFQSLFVRNKA 186

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T    +E  A    A       + L +          F EG+  +QD ++ +    
Sbjct: 187 SVRVTDASRLEEIAEATGAERSDLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 246

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLH-LYAEDI 293
            G      +LD CAAPGGKT  +   ++   VTALD+   +L  +  N  RL        
Sbjct: 247 LGIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLVLIEENAQRLGQADKVRT 306

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D        P   FD +LVDAPCS  G IRR PD+ + +   D       Q  +L  
Sbjct: 307 QKLDASQVHQVFPSDSFDKILVDAPCSGIGLIRRKPDIKYNKYLQDFESLKSVQLDILSS 366

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  ++++EV+Q  L S P   E V L+            +   
Sbjct: 367 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHP-DFEQVALDHP-------CKDIVVN 418

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           G + ITP+            DGFF   LR+ +
Sbjct: 419 GCLAITPEQYL--------TDGFFIAQLRKKV 442


>gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
 gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
          Length = 432

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 186/460 (40%), Gaps = 60/460 (13%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R+ +  +L  V          LD      + + +   D+ L   I   ++R    +D+ 
Sbjct: 2   PRMAAWKVLQAV-SAGAYAETALDQVLNKYSMKAI---DKALTTEIAYGSIRQRKYLDSW 57

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +D +   S  ++   L+ LL + + QI  +  +   AVV+  V+ AK +  N+  + +VN
Sbjct: 58  IDNLAKISALKQPPRLRWLLHIGLYQIFLMERIPVSAVVNTTVQLAKNNNLNK-LSSVVN 116

Query: 126 SILRRVS---------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            ILR              K    + +A    IP W    L  + G++   +I+ A   P 
Sbjct: 117 GILRNAIRIREAGQGLPFKSNASEELAQSFSIPLWLANSLITWRGEQGAKSIAMAFNQPP 176

Query: 177 YIDLTVKFDI----------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
             DL +              + +      +   T G+++      +   PG+  G W VQ
Sbjct: 177 AFDLRINRCKTNPRSVQEIFDKFGITSLPIKGCTSGLQITSGMGDLRKWPGYEGGEWSVQ 236

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
           D S+     L        +LD C+APGGK   L   I    ++ A+D S +RL+K+  N 
Sbjct: 237 DRSSQWIAPLLEAEPGDRILDACSAPGGKATHLAELIDDNGEIWAVDRSPKRLQKVSENA 296

Query: 284 DRLHLYAEDIIEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
            RL L +   +  D           K  F  +LVDAPCS  GT+ R+PD  W    + I 
Sbjct: 297 TRLGLNSLKCLAADASMLLDCKPHWKGYFQRILVDAPCSGLGTLSRNPDARWRMTPEKID 356

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           +    Q +LL   +  + PGG +V+S C++  +++ + V + L   P  V+L   N    
Sbjct: 357 ELIILQARLLRGVLPLLSPGGRIVYSTCTMHPEENFKQVGEFLALHP-KVKLKYQN---- 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                          +I PD  +         DGF+A  +
Sbjct: 412 ---------------QIWPDDAQS-------GDGFYAAVI 429


>gi|225461943|ref|XP_002266112.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 112/480 (23%), Positives = 184/480 (38%), Gaps = 63/480 (13%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL--------------VRAIV 53
           R VS+  L  +         LL+     S    +   ++ L              V  IV
Sbjct: 60  RAVSAVRLMRIELGGAFAD-LLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIV 118

Query: 54  NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
             ++R+   +D ++  +     +    +  L Q+LR+   +I+ LD+  YAVVD  V  A
Sbjct: 119 GGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLA 178

Query: 112 KRDKENRHFAKLVNSILRRV--------------SREKIELLQRIAGISIIPEWFKERLE 157
           K          +VN+ILR++                +     + +A +   P W   R  
Sbjct: 179 KVALRP-GAGNMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWT 237

Query: 158 NFYGKERVLAISDACISPLYIDLTVK----FDIETWAHKLNAVMLPTG-------GIRLK 206
            + G+E  + +     S     L       F       +L  + +P          +R++
Sbjct: 238 KYLGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIR 297

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---G 263
              + ++      EG+  VQD SA + V +       S++D CAAPGGKT  +       
Sbjct: 298 TGMQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQ 357

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTG 320
             V A+D++K RL  ++     L +               K      D VL+DAPCS  G
Sbjct: 358 GMVHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLG 417

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            + +  D+ W R  +D+ +    Q +LL      VKPGG++V+S CS+D +++EE V   
Sbjct: 418 VLSKRADLRWNRSLEDMEQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAF 477

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L+  P         S       +      EG            + V   +DG FA  L R
Sbjct: 478 LQRHPEF-------SIDPVGRYVPSDFVTEGG-------FYFSNPVKHALDGAFAARLVR 523


>gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL]
 gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL]
          Length = 423

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/454 (24%), Positives = 195/454 (42%), Gaps = 63/454 (13%)

Query: 14  LLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L  V +K+ S +  L++  +        +++D+ L   +V+  LR+   ID  ++FV  
Sbjct: 2   TLFEVEKKKFSGMDSLMEKFHQKLK----NEKDRALFVELVHGVLRYKNLIDYYINFVTK 57

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             +      +  +LRV+  ++L+L+ + +YA V+ A E A +   + H    VN+ILR +
Sbjct: 58  KGVK--DKRILNILRVATYELLFLEKIPEYATVNEACEVASKI--SPHLKAFVNAILRNI 113

Query: 132 SREKIELLQ------------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            R K ++ +             I+     P++  + LE  YG E+ L I +   +   + 
Sbjct: 114 IRNKNQIEESLERIKEIDLKSYISIKLSYPKFLIDYLEESYGFEKALKILEFLNTRPPVG 173

Query: 180 LTVKFDI--------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
           + +            E     +   +       +  L  +I     + +G ++ QD ++S
Sbjct: 174 IKINTKKTNVDILVQELRKSGVEYEVNSHNSEIIYILKGNIKDTQLYKQGYFYFQDLASS 233

Query: 232 --IPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
             + +          VLDLCAAPGGK      V    V A D++  +L+ LR N+ RL  
Sbjct: 234 LVVGLNKEDFKKAKKVLDLCAAPGGKTFNCAEVIDGFVVACDINDHKLDVLRENILRLGF 293

Query: 289 YAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
               + + DA  + P     FD V+ D PC+  G IR+ PD+ W +   DI      Q +
Sbjct: 294 DNIIVAKSDAEIFNPDFAGRFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVR 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    S++K GG++ +S C+L ++++EE V K L        LV               
Sbjct: 354 ILDNAASYLKRGGLLFYSTCTLGRKENEETVLKFLDKHK-DFSLVSQ------------- 399

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 I I PD  +         DGFF   LR+
Sbjct: 400 ------ITIFPDEFK--------CDGFFISKLRK 419


>gi|256823833|ref|YP_003147796.1| sun protein [Kangiella koreensis DSM 16069]
 gi|256797372|gb|ACV28028.1| sun protein [Kangiella koreensis DSM 16069]
          Length = 443

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 112/462 (24%), Positives = 196/462 (42%), Gaps = 44/462 (9%)

Query: 1   MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           M+S +N         R  +   L  +  +  S   +L+    +         D  L RA+
Sbjct: 1   MQSTLNKHTVNSQQLRQQACLALHAIAFEGRSANDVLNSIQFEQ------GSDNSLFRAL 54

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA---VE 109
           V  + R+  R++++   +L      K   L  L+ + + Q+ Y  V D+A +       E
Sbjct: 55  VLGSCRYFIRLESIAKQLLQKPFKPKDQDLLCLIIIGLYQLEYSRVPDHAAISETVSVCE 114

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
           Q K+    +    ++ + +R+      +          +P+W    L+ +Y   ++ ++ 
Sbjct: 115 QLKKPWATKLVNGVLRNFVRQQPELLSQADSNWDTRFAMPDWLISVLKPYYKG-QMESLM 173

Query: 170 DACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAE 220
           +A      + L V       + +   L    LP     +         P S+  LP F++
Sbjct: 174 EAINQQAPMTLRVNRQRIGRDQYLELLLEQGLPASTHPIATSALVLEHPVSVEQLPHFSD 233

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278
           G   VQDA+A +   +     +  VLD CAAPGGKT     +     +TA DV   R ++
Sbjct: 234 GYVSVQDAAAQLAAGILAPPPHSIVLDACAAPGGKTCHLLELCDSIALTACDVDHERCQR 293

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +  NL RL L A+   +       P   FDA+L+DAPCS+TG IRRHPD+   R   DI 
Sbjct: 294 ISENLLRLDLSAKLDCQDLTDSNYPDNHFDAILLDAPCSATGVIRRHPDIKLLRHASDID 353

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           +    Q+++L      +K GG ++++ CS+  Q++E+ +   L       +LV L+    
Sbjct: 354 QLVQLQQQILEHLWCKLKAGGRLLYATCSILPQENEQQITHFLERHK-DAKLVSLSEQI- 411

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++ +  G  ++ P  L         MDGF+   L +
Sbjct: 412 ----QNLSHTKTGC-QLIPGQLS--------MDGFYYALLEK 440


>gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 428

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/453 (21%), Positives = 192/453 (42%), Gaps = 53/453 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN+R ++  +L  V   +     LL+     +    L+Q+D+  V  +V+  +     +D
Sbjct: 10  MNSRSIAFDILKKVFVNKAYSNVLLNKISKKN----LNQQDKDFVFNLVHGVISNKIHLD 65

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L  ++   + +    LQ +L +S+ Q++YL+ + +YA+V+ +V   K    ++  A  
Sbjct: 66  YLLAKLID--VKKTSIDLQVILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 121

Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+IL +  R K + L+            +          L   Y KE V  I       
Sbjct: 122 INAILNKFLRFKDKYLEINLDNKDLELCILHSFSYELYLMLIKQYDKEIVNQIVVNNHQI 181

Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
             + + V     T     N      ++  T         ++I++   +  G   +QD ++
Sbjct: 182 PKLYIRVNTLKITSDQLFNKYKDIYLLEKTNVNDCLIANKTIINSDLYKNGFITIQDKAS 241

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  Q+     N  VLD+C+APGGK   L +   +   + A ++++ +++ ++ N+ RL+
Sbjct: 242 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVANEINESKIKLIKENITRLN 301

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +I MDA     ++ FD +L+DAPCS  G  +R P++    D   +      Q +L
Sbjct: 302 CLNISVINMDARKIKQRQEFDYILLDAPCSGFGVFKRKPEIKLRFDQIQVNSIINLQEEL 361

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K  G +V+S C++++ +++  + K L      ++L                 
Sbjct: 362 LESAYYNLKNNGEMVYSTCTINQDENQNQINKFLNKHKDMIKL----------------- 404

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                        ++I G     DGF+   L++
Sbjct: 405 -----------YEQQIFGFEENTDGFYICKLKK 426


>gi|227504402|ref|ZP_03934451.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           striatum ATCC 6940]
 gi|227199050|gb|EEI79098.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           striatum ATCC 6940]
          Length = 506

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/453 (21%), Positives = 150/453 (33%), Gaps = 37/453 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR VS  +L  V          L           L  RD      +   +LR    +DAV
Sbjct: 71  ARAVSFEVLRRVHSDDAFANLTLPKALRVHK---LEGRDAAFATELTYGSLRTEGVLDAV 127

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +      +L      +   LR+   Q+L+  V  +A VD  V   +     +      N 
Sbjct: 128 IGECSSRALDAIAPEVLDALRLGAYQVLFTRVEPHAAVDTTVRLVEAADFEK-AKGFANG 186

Query: 127 ILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           I+R ++R   E               A     P W  +      G   + A  +      
Sbjct: 187 IMRTITRTPAEKWLDKLAPQGEIAALAFKHAHPAWIAQSFSRVVGLGELEAALEGDSQRP 246

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
            + L  +      E  A              +         L    +G   VQD  + + 
Sbjct: 247 IVHLVARPGEISAEELALMTGNEEGKYSPYAVYMESGDPGDLEPVKQGFAAVQDEGSQLI 306

Query: 234 VQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH 287
            +               LDLCA PGGK A +        A  D  +    +       + 
Sbjct: 307 ARAVVEAPVAGTDSGRWLDLCAGPGGKAALMGALARIEQAHVDAVEVSPHRAELIKKTVA 366

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +   D  +      FD VLVDAPCS  G +RR P+  W +   DI      Q +L
Sbjct: 367 DLPVRVHVADGRNPGLLAGFDRVLVDAPCSGLGALRRRPEARWRKSESDIAGLNELQFEL 426

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L   +  V+PGG+VV+S CS D +++ +VV + +        L  +     + I     +
Sbjct: 427 LESALKLVRPGGVVVYSTCSPDLRETRDVVDRAVAK------LGAVELDAHELIPDMGDV 480

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +++ P           G D  F  ALRR
Sbjct: 481 GHHKSVQMWPH--------RHGTDAMFFAALRR 505


>gi|329730006|gb|EGG66397.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           epidermidis VCU144]
          Length = 393

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/403 (23%), Positives = 181/403 (44%), Gaps = 30/403 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R  +   ++ V+ K       ++     +    ++  D+ L   +V  T++  
Sbjct: 2   MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTIKRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   + + +      ++QLL +S+ Q LYLD + ++A++  AV+ AK+     H
Sbjct: 56  YTLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGF-H 111

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN ILR V R       +  +  +RIA    +P+W  +     +G E+   I+ + 
Sbjct: 112 TGNIVNGILRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGVEKTENIARSF 171

Query: 173 ISPLYIDLTVKFDIETW---AHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224
           + P+   +      ++      KL                L      +V+   F EG   
Sbjct: 172 LEPVTTTVRANISRDSIDSIISKLEQEGYHVKKDDMLPFCLHISGMPVVNSNAFKEGYIS 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281
           +QD S+ +   +     +  VLD C+APGGK   +         V A D+ + ++  ++ 
Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           N+ +L L      + DA +   K  +D +LVDAPCS  G +R  P++ +++  + I    
Sbjct: 292 NIKKLKLNNIKAFQHDATEVYDKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
             Q ++L      +KPGG +V+S C++++ ++E V+    + +
Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFFKET 393


>gi|299136400|ref|ZP_07029583.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600915|gb|EFI57070.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 456

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 173/457 (37%), Gaps = 61/457 (13%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
             ARL +  +L  V         LL      S   LLSQ D+ L  A+V  TLR+   +D
Sbjct: 39  TPARLAAFEILERVATSSAHSDDLL----YGSGLALLSQADKNLTTALVLGTLRWQIALD 94

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
           A +  +L          +Q  LR+   Q+L++D +  +A +  +VE A+    + +   +
Sbjct: 95  ARIKPLLQRPELTLAQPVQTALRLGAFQLLHMDRIPAHAALSESVELARA-AGHPYAVGM 153

Query: 124 VNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           VN++LR+        +   E     A     P W  ER    YG+   LAI +       
Sbjct: 154 VNAVLRKLAAAKPPGQRLHESTAAFAERLGHPSWLAERWVTNYGRATALAICEYDQQEP- 212

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
                                     RL +    +  L                      
Sbjct: 213 --------RAGDLFSQEDTEEGGSQPRLDDGSRLVGELAA-------------------A 245

Query: 238 GTLNNLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRL-HLYAEDII 294
                  + D CAAPGGKT         A + A DVS  RL  +   L R  H      I
Sbjct: 246 SVSGAQRIWDCCAAPGGKTLLLAQRHPQADLLATDVSSYRLRAMAQRLQRDVHGKKVRTI 305

Query: 295 EMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           E DA      +  FD +L D PCS TGT+ R+P++       D+ + A  QR +L   + 
Sbjct: 306 EADASTLSEDEGLFDLILCDVPCSGTGTLARNPEIRHHLRPSDLARQAERQRAILSAALL 365

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWKSIDMA------- 404
            + PGG +++S CSL+ +++E+VV+ V         + LV       +  +         
Sbjct: 366 RLAPGGRLIYSTCSLEPEENEQVVKVVFEGAKEKTGISLVSAEPVVARLQEQGVLAAEAN 425

Query: 405 -MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              L+ +G++R  P    +        DGFFA    R
Sbjct: 426 VAKLTRDGFLRTLPGAGFE-------GDGFFAAVFVR 455


>gi|170719272|ref|YP_001746960.1| sun protein [Pseudomonas putida W619]
 gi|169757275|gb|ACA70591.1| sun protein [Pseudomonas putida W619]
          Length = 436

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 192/443 (43%), Gaps = 42/443 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  + SL   L  +        + +RD+ L + +   T R+ PR+D +   +L      
Sbjct: 14  VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               +Q LL + + Q+ Y  +  +A +   V  A + K+      L+N++LRR  RE   
Sbjct: 69  ADADVQALLLIGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEA 127

Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190
               + +     +  P W ++ L+ F+  E+  AI  A  +   + L V       + + 
Sbjct: 128 LLAGMERDPVVRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186

Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +     +             + SLPGFAEG   VQD +A +   L        
Sbjct: 187 ALLTETGVGASACQFSRDGIVLTEACDVRSLPGFAEGWVSVQDEAAQLSADLLELAPGQR 246

Query: 245 VLDLCAAPGGKTAQLIVSG---AKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299
           VLD C APGGKT  L+ +      + A+D+  +RL ++R NL+RL L A        D  
Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLGHLVAIDLEAKRLTRVRENLERLQLDAELIACDARDTA 306

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +LL      ++ GG
Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALAALQGELLDALWPTLEVGG 366

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           +++++ CS    ++ EV+   L  +P   EL     A  +       L+ EG        
Sbjct: 367 MLLYATCSSLPTENTEVIGAFLARTPGARELDLATEAGIRQPHGRQLLAQEG-------- 418

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
                    G DGF+   L ++ 
Sbjct: 419 ---------GHDGFYYAKLIKIA 432


>gi|310659156|ref|YP_003936877.1| rsmb [Clostridium sticklandii DSM 519]
 gi|308825934|emb|CBH21972.1| RsmB [Clostridium sticklandii]
          Length = 444

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/463 (19%), Positives = 193/463 (41%), Gaps = 58/463 (12%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  NAR ++  ++  V   +      ++  +  +    +  R++  V  +V   L  L
Sbjct: 11  MSN--NARKIAYDIIYDVKYNKAYSNISINKAFNKN---TIDNREKGFVTELVYGALSRL 65

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  ++  L     +     + +L +   Q+ ++D V+D+A VD +V+  K+   +  
Sbjct: 66  IYLDYQIEQFLDMRASKLSKQAKTVLEMGFYQLEFMDSVSDFASVDESVKLIKKV--DNR 123

Query: 120 FAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDA 171
            A ++N+++R+  +E                +    I E+   R    Y +E    +  +
Sbjct: 124 SAGIINAVMRKRVKEGKAEYTDKISDKAKSLSIEFSISEYIARRFLKIYKEEFTRQLLSS 183

Query: 172 CISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGV 222
            +    + + +     T A                            ++I S P F +G 
Sbjct: 184 MLEKPSLFIRLNKLRSTEAELFENLEQQGIYSKKNDIIDSAYEISGMKNIGSNPLFVKGG 243

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           + +QD S+ + V+    L   +VLD+C+APGGK+  +   + +  ++ ++D+S+ +++ L
Sbjct: 244 FVIQDLSSMLAVKALNPLPGDTVLDICSAPGGKSFYIADLMENKGQLDSMDISEHKIQML 303

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           +     L +   +   MDA  +  +    +D +LVDAPCS  G IRR P++ + +  +D+
Sbjct: 304 KKRAVELGVDIINARVMDATVFNEEMTNRYDKILVDAPCSGFGIIRRKPEIRY-KSYEDV 362

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    Q ++L     ++K  G +V+S C+L+K+++ E+V K L ++             
Sbjct: 363 NQLPEIQYQILSNASKYLKDTGSLVYSTCTLEKKENIEIVDKFLENNKEFYLEEEPKE-- 420

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                            + P +           DGFF    ++
Sbjct: 421 -----------------LYPHI--------HNTDGFFIAKFKK 438


>gi|26986811|ref|NP_742236.1| sun protein [Pseudomonas putida KT2440]
 gi|46396870|sp|Q88RR3|RSMB_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|24981407|gb|AAN65700.1|AE016196_11 sun protein [Pseudomonas putida KT2440]
          Length = 436

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 195/443 (44%), Gaps = 42/443 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  + SL   L  +        + +RD+ L + +   T R+ PR+D +   +L      
Sbjct: 14  VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               +Q LL V + Q+ Y  +  +A +   V  A + K+      L+N++LRR  RE  E
Sbjct: 69  ADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127

Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190
               + +     +  P W ++ L+ F+  E+  AI  A  +   + L V       + + 
Sbjct: 128 LLAGMERDPVVRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186

Query: 191 HKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +     +      +      +  LPGFAEG   VQD +A +   L        
Sbjct: 187 ALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQR 246

Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299
           VLD C APGGKT  L+ + A    + A+D+  +RL ++R NLDRL L A        D  
Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLANMVAIDLEAKRLTRVRENLDRLQLDAELIACDARDTA 306

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +LL      ++ GG
Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKMTRQADDIPALATLQGELLDALWPTLEVGG 366

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           +++++ CS    ++ EV++  L  +P   EL     A  +       L+ EG        
Sbjct: 367 MLLYATCSTLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQEG-------- 418

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
                    G DGF+   L ++ 
Sbjct: 419 ---------GHDGFYYAKLIKIA 432


>gi|170016869|ref|YP_001727788.1| putative rRNA methylase [Leuconostoc citreum KM20]
 gi|169803726|gb|ACA82344.1| Putative rRNA methylase [Leuconostoc citreum KM20]
          Length = 450

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 191/460 (41%), Gaps = 44/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R+++   L+ + +        L+      A   L+  D+ L+  +V   ++     D 
Sbjct: 10  NPRVLAVQTLAKI-KNGAYSNLQLNQVIKKHA---LNDSDKRLLTTLVYGVIQHRLTFDY 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     + +  +++LL  ++ Q+ YLD +  +A+ + ++E AK    +   AK V
Sbjct: 66  WLTPFIKQ--KKIEPWVRELLYTALFQLQYLDKIPQHAIFNESIEVAKT-LGHIGTAKFV 122

Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +IL  +SR+           +QR++  + +P W  E L    G+ +   I  +      
Sbjct: 123 TAILHNISRQGLPDINAIQNPIQRLSVEASLPVWLIETLVKQNGEAKTRQIIGSINDAPA 182

Query: 178 IDLTVKFDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V   + T      A++                      +     + +G+  +QD S
Sbjct: 183 QAIRVNTALSTDEAVEQALLDEHFTFVKSKVADHAYVVTGGHVAGSKAYQDGLLTLQDES 242

Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285
           A +PV+       +  + D  AAPGGKT Q+       A + ALD+   ++  +  N  R
Sbjct: 243 AMLPVEALQITTQVKTVLDAAAAPGGKTTQIAQYIADDATIIALDIHAHKIRLIEANAKR 302

Query: 286 LHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L +       +++           FD +LVDAPCS  G +RR P++ + +  +D++  A 
Sbjct: 303 LRVSDKITAQVLDARQTANQLTTKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVMNLAS 362

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      V   G++V+S C++ +Q++++V+ + L       ELVP  +      +
Sbjct: 363 LQGEILDSVSQNVADNGMIVYSTCTILRQENDDVIARFLSKH-TDFELVPTMTNKALKSN 421

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +     + I P+            DGFF   L++  
Sbjct: 422 RQETV-----LHIYPNDY--------HTDGFFVATLKKKT 448


>gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1]
 gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1]
          Length = 431

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 114/458 (24%), Positives = 202/458 (44%), Gaps = 45/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N RL++  LL    +++      +  E  DS    L  +D+   + +V   +R  
Sbjct: 1   MKT--NVRLLAYRLLRKYEKEK-----FILREDVDSVLSFLDDKDRRFFKELVWGVVRKE 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  ++ +L         +++  LR+   Q+L+++ V DYA V   V+  K    N +
Sbjct: 54  ELLDWYINQLLKK--KDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK----NEN 107

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           F KLVN++LRR+          +  I   PEW      +F  +E VL I      PL + 
Sbjct: 108 FKKLVNAVLRRLRTVPEPKELHL--IYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVM 165

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDA 228
           L V   + T   ++  ++   G   +                         +G+  VQ  
Sbjct: 166 LRVN-SLATTKEEVIKILAEEGTEAVPGKHAPFSLVVRKLGISMNDSRVIKDGLASVQGE 224

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +          L VLD CAAPGGKT    +L+    K+ A+D+S+ + + +  +  R
Sbjct: 225 SSQLVPFFMELKPGLRVLDTCAAPGGKTTAIAELVKDQGKILAVDISREKTQLVEKHAKR 284

Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L + +    D        +  FD +LVDAPC+S GT R HP+VL   + +D  K +  
Sbjct: 285 LKLSSIETKIADVERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKFSEI 344

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +++ Q    ++ GGI+++S C++ K+++ EVV++ +      VE++       K  ++
Sbjct: 345 QLRMVQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVSERK-DVEVIDTRDKM-KEFEV 402

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  G++ + PD              F+   LR++
Sbjct: 403 EGIWDGYGFL-MLPDETITP---------FYVSVLRKM 430


>gi|253997546|ref|YP_003049610.1| sun protein [Methylotenera mobilis JLW8]
 gi|253984225|gb|ACT49083.1| sun protein [Methylotenera mobilis JLW8]
          Length = 432

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 110/448 (24%), Positives = 190/448 (42%), Gaps = 38/448 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++  +  V     +LT  L      S F   + + +     +   TLRF   IDA L 
Sbjct: 6   QIAADAVHQVFA-GRNLTIALPAAL--SLFPNATPQQKGAAADLSYGTLRFYGEIDAYLR 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR---HFAKLVN 125
            +L   L      +  LL V++ Q+ +     + VV+ AV    + +          LVN
Sbjct: 63  ALLEKPLA--DERIHALLLVAIYQLRHDKADAFTVVNQAVHAVSQLRRPAVKAWAKGLVN 120

Query: 126 SILRRVSREKIELL----QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           ++LR   R++ +L              P+W+  +L+  Y  +    I         + L 
Sbjct: 121 AVLRNFLRQQAQLTLKLTANEVATYSYPQWWVNKLKTQYP-DAWQGILSVGNQHPPMSLR 179

Query: 182 VKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
           V       A  L                  +   P ++  +PGF++GV  VQD  A +  
Sbjct: 180 VNTQKIAIADYLQLLALSEIEATQVGAQSVILTKPVAVEKIPGFSDGVVSVQDYGAQLAA 239

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA-ED 292
            L G  + + VLD C APGGKT+ ++  +  ++TALD    RLE+++ NL RLHL A   
Sbjct: 240 HLIGAEDGMRVLDACCAPGGKTSHILELAKVEMTALDSDALRLERVQSNLARLHLNAQVI 299

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             +  + D+   K FD +L D PC+++G +RRH D+ W R   D+      Q K+L    
Sbjct: 300 AGDAGSADWYDGKPFDRILADVPCTASGIVRRHVDIKWLRRETDVASFVAQQAKILPSLW 359

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +  GG +++  CS+ K++++  + + L+ +    +L P+  A  +             
Sbjct: 360 QMLAKGGKLLYVTCSVFKEENQAQIDQFLQKNADAQQL-PIEQALAQYNVA--------- 409

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  ++     S+  DGFF   L++
Sbjct: 410 ------HIQGQLIPSNSHDGFFYALLQK 431


>gi|241889945|ref|ZP_04777243.1| ribosomal RNA small subunit methyltransferase B [Gemella
           haemolysans ATCC 10379]
 gi|241863567|gb|EER67951.1| ribosomal RNA small subunit methyltransferase B [Gemella
           haemolysans ATCC 10379]
          Length = 441

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 93/459 (20%), Positives = 188/459 (40%), Gaps = 39/459 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S +NAR ++  +L  ++++       L+  +       + ++D+  +  +V  +++    
Sbjct: 2   SNINARHIAYEVLYTIIQEDGYSNITLNKYFNQYK---VEEQDKRFISEVVYGSIKNKLY 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ++ +L         R K  ++ +L +S+ Q+LY+D   ++AV+D AV+  K+   N    
Sbjct: 59  LEHILKSYSKG---RVKPKVKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKIAGN-ITG 114

Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           K VN ILR + R             ++    +  P      L+  YG E+   I  +   
Sbjct: 115 KFVNGILRNIERNASNLDLKYKNATEKFCIENSCPSELYNILKIQYGVEKAQKIVISFNE 174

Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASA 230
                +         +    KL + +  +       +   +      F +G + VQD ++
Sbjct: 175 KSKNSIRYNPLKITKKDLIEKLGSAVSESEICEDSLVLNKLNLDSSLFTKGYYIVQDEAS 234

Query: 231 --SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286
                           +LD CAAPGGK+  +      + + + D    +L+ +  N ++L
Sbjct: 235 ALVASSIGLPIDKKYKILDTCAAPGGKSLHIASKYFNSSLISCDKYIHKLKLIEDNKEKL 294

Query: 287 HLYAEDIIEMDA--FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +   ++ E DA   +      FD V+ D PCS  G I+  P++ +      +   A  Q
Sbjct: 295 GITNIEVKEQDATLNNTSFNNKFDIVICDVPCSGIGVIKNKPEIKYKITNSYVEDIAKLQ 354

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             +L     +VK  GI+++S C++DK+++ + ++K L+ +     L  ++          
Sbjct: 355 YDVLDNSKHYVKQEGILMYSTCTIDKRENIKNIEKFLKENK-DFSLESISLKNSIVKTR- 412

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                 G + I PD            DGFF   L+++ +
Sbjct: 413 ----ENGVLEILPDEYS--------CDGFFIAKLKKMEE 439


>gi|222529034|ref|YP_002572916.1| Fmu (Sun) domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455881|gb|ACM60143.1| Fmu (Sun) domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 406

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 107/425 (25%), Positives = 181/425 (42%), Gaps = 58/425 (13%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VAD 100
           +++D+ L   +V+  LR+   ID  ++FV    +      +  +LRV+  ++L+L+ + +
Sbjct: 10  NEKDRALFVELVHGVLRYKSLIDYYINFVAKKGVK--DKRILNILRVATYELLFLEKIPE 67

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE------------LLQRIAGISII 148
           YA V+ A E A +   N H    VN+ILR + R K +                ++     
Sbjct: 68  YATVNEACEVASKI--NPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSYLSIKLSY 125

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGI-- 203
           P +  + LE  YG E+ + I +   +     + +     ++ T   +L            
Sbjct: 126 PRFLIDYLEESYGLEKTIKILEFLNTKPPQSIKINTKKTNVNTLTQELEKNGFKYEINSR 185

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGK-TA 257
               +  L  +I     + EG ++ QD ++S+              V+DLCAAPGGK   
Sbjct: 186 NNEIVLILKGNIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKVIDLCAAPGGKTFN 245

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAP 315
              V    V A D+++ +L+ LR N+ RL      +     + F+    + FD V+ D P
Sbjct: 246 CAEVIDGFVVACDINEHKLDILRENILRLGFDNIIVAKSNAEVFNPDFAEKFDIVIADLP 305

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           C+  G IR+ PD+ W +   DI      Q ++L     ++K GGI+ +S C+L K+++EE
Sbjct: 306 CTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNSAGYLKRGGILFYSTCTLGKKENEE 365

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            V + L        LV L +                   I PD  E         DGFF 
Sbjct: 366 TVIEFLEKHK-DFSLVSLTT-------------------IFPDEFE--------CDGFFI 397

Query: 436 VALRR 440
             LR+
Sbjct: 398 AKLRK 402


>gi|215403254|ref|ZP_03415435.1| fmu protein (sun protein) [Mycobacterium tuberculosis 02_1987]
 gi|289745158|ref|ZP_06504536.1| sun protein [Mycobacterium tuberculosis 02_1987]
 gi|289685686|gb|EFD53174.1| sun protein [Mycobacterium tuberculosis 02_1987]
          Length = 768

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 109/463 (23%), Positives = 167/463 (36%), Gaps = 46/463 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V  +      +L       A R +  RD      +   T R    +DA
Sbjct: 326 PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 382

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+      S       L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN
Sbjct: 383 VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 441

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170
            +LR ++                       A +   P W  +   +  G     + A+  
Sbjct: 442 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 501

Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +  + T       +   +       +         L    +G   VQD
Sbjct: 502 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 561

Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279
             + +  +              LDLCA PGGKTA L        A+VTA++ S  R + +
Sbjct: 562 EGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 621

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             N     L   +++ +D         FD VLVDAPC+  G +RR P+  W R   D+  
Sbjct: 622 AQNTR--GLP-VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 678

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR+LL   I+  +PGG+V+++ CS    ++   V   LR  P+             
Sbjct: 679 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHAL-----DTRPL 733

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +   L     +++ P           G D  FA ALRRL 
Sbjct: 734 FEPVIAGLGEGPHVQLWPH--------RHGTDAMFAAALRRLT 768


>gi|322373356|ref|ZP_08047892.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           C150]
 gi|321278398|gb|EFX55467.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           C150]
          Length = 443

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 114/452 (25%), Positives = 203/452 (44%), Gaps = 36/452 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  V ++       L+     S    L+ +D+ LV  +V  T+     ++ +
Sbjct: 12  ARGQALEVLEEVFQEGAYSNIALNARLSKSH---LTDKDKALVTEMVYGTVARKITLEWI 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  V+     + +  +  LL +S+ Q+ YLD +  +AVV+ AV  AK     +   KL+N
Sbjct: 69  LAHVIE-DRDKLEAWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAKNRGNKKGAEKLIN 127

Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           ++LR+          +   + +R +    +P W  ++L + YG++R LAI  +    +  
Sbjct: 128 AVLRKLSSQPLPDPSKIKRVNKRYSVQYSLPVWLVKKLIDQYGEDRALAIFQSLFVRNKA 187

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T    +E  A    A       + L +          F EG+  +QD ++ +    
Sbjct: 188 SVRVTDVSRMEEIADATGAERSELSPVGLVKSSGYFAGTEYFKEGLLTIQDETSQLVAPT 247

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
            G      +LD CAAPGGKT  +   ++   VTALD+   +L+ ++ N  RL L      
Sbjct: 248 LGIQGEEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLDLIKENAQRLGLADKVKT 307

Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++D        P   FD +LVDAPCS  G IRR PD+ + +D  D       Q  +L  
Sbjct: 308 QKLDASQVHRVFPADSFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFASLKAVQLDILSS 367

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++  ++++EV+Q  L + P   ++   +      ++  +A++PE
Sbjct: 368 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLETHPDFEQVALDHPCQNIMVNGCLAITPE 427

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            ++                 DGFF   LR+  
Sbjct: 428 QYL----------------TDGFFIAQLRKKA 443


>gi|326693796|ref|ZP_08230801.1| 16S rRNA methyltransferase B [Leuconostoc argentinum KCTC 3773]
          Length = 452

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 103/459 (22%), Positives = 192/459 (41%), Gaps = 44/459 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R+++   L+ + +        L+          L + D+ L+  +V   ++     + 
Sbjct: 10  NPRVLAVQTLAKI-KNGAYSNLQLNQVIK---QHQLGEADKRLLTTLVYGVIQHRLTFEY 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +    +++LL  ++ Q+ YL+ +  +A+ + ++E AK    +   AK V
Sbjct: 66  WLAPFV--GDKKLNPWVRELLYTALFQMQYLNKIPQHAIFNESIEVAK-ILGHVGTAKFV 122

Query: 125 NSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +IL  +SR+ +     IA         + +P W    L    G+    A+         
Sbjct: 123 TAILHNISRQGLPDTAAIADPITRLSVEASLPVWLINELVAQNGEAATRALVATINDAPM 182

Query: 178 IDLTVKFDIET--------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V   + T         +  + A                + S   + +G   +QD S
Sbjct: 183 QSVRVNTVLATDEEVVASLASENMTATKSQVADHAYIVSGGHVASSTAYQKGWLTLQDES 242

Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           A +PV+       +  + D  AAPGGKT Q+   +   AK+ ALDV   +++ +  N  R
Sbjct: 243 AMLPVESMHLTPAVKNVLDAAAAPGGKTTQIAALVADDAKILALDVHPHKIKLIEQNATR 302

Query: 286 LHLYA-EDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           L +    D   +DA     +    FD +LVDAPCS  G +RR P++ + +  +D+   A 
Sbjct: 303 LQVADRIDTQVLDARKVPTEVATKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVQNLAR 362

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      V   G++V+S C++ +Q++++V+ + L   P   ELV   +A+    D
Sbjct: 363 LQGEILDSVSQNVAENGMIVYSTCTILRQENDDVIAQFLAKHP-EFELVKTQTAHDLKAD 421

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              A+     + I P+            DGFF   L++ 
Sbjct: 422 RQKAV-----LHIYPNDY--------HTDGFFVATLKKK 447


>gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 419

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/453 (20%), Positives = 192/453 (42%), Gaps = 53/453 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN+R ++  +L  V   +     LL+     +    L+Q+D+  V  +V+  +     +D
Sbjct: 1   MNSRSIAFDILKKVFVNKAYSNVLLNKISKKN----LNQQDKDFVFNLVHGVISNKIHLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L  ++   + +    LQ +L +S+ Q++YL+ + +YA+V+ ++   K    ++  A  
Sbjct: 57  YLLGKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESINLIKTT--SQKQANF 112

Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+IL +  R K + L+            +          L   Y KE V  I       
Sbjct: 113 INAILNKFLRFKDKYLEINLDNKDLELCILHSFSYELYLMLIKQYDKEIVNQIVVNNHQI 172

Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
             + + V     T     N      ++  T         ++I++   +  G   +QD ++
Sbjct: 173 PKLYIRVNTLKITSDQLFNKYKDIYLLEKTNVKDCLIANKTIINSDLYKNGFITIQDKAS 232

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  Q+     N  VLD+C+APGGK   L +   +   +   ++++ +++ ++ N++RL+
Sbjct: 233 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVGNEINESKIKLIKENINRLN 292

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +I MDA     K+ FD +L+DAPCS  G  +R P++    D   +      Q +L
Sbjct: 293 CLNISVINMDARKIKQKQEFDYILLDAPCSGFGVFKRKPEIKLRFDQIQVNSIINLQEEL 352

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K  G +V+S C++++ +++  + K L      ++L                 
Sbjct: 353 LESAYYNLKNNGEMVYSTCTINQDENQNQINKFLNKHKDMIKL----------------- 395

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                        ++I G     DGF+   L++
Sbjct: 396 -----------YEQQIFGFEENTDGFYICKLKK 417


>gi|237745177|ref|ZP_04575658.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1]
 gi|229432406|gb|EEO42618.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1]
          Length = 435

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 200/452 (44%), Gaps = 37/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN + V+ +L+S V  K       L+  +       ++ +++  +  I    +R    +D
Sbjct: 1   MNVKQVAINLISQVD-KGAYSNIALNETFK---TLNINSKEKAFITEIFYGVIRNKKFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ QI ++D  +  +V  A E  K+       +K +
Sbjct: 57  YIIERYTK---EIKKEWIRNLLRISIYQITFMDSDNKGIVWEATELTKKKYGMT-ISKFI 112

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K       +  +    +  IP+WF + LE  YG + +     +     Y+
Sbjct: 113 NGTLRNYLRNKDTELKRLDDEKNYEVLYSIPKWFYDILEKQYGDKNLKQAITSLKKVPYL 172

Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            + V        + E +  + +  ++             I+    F  G    QDAS+ +
Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIIISEEFKTGKIIAQDASSYL 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +  G L+N  VLD+CAAPGGKTA   + + +  ++ A+D+ + +++ +  N+ +L + 
Sbjct: 233 AAKNLGVLSNELVLDICAAPGGKTAVLAEQMENKGEIIAIDIHQHKIKLIETNMKKLGID 292

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I MD        + FD +LVD PCS  G IR+ P++L++++ ++I + A  Q ++L
Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++S C++  +++   ++K L+          +   Y           
Sbjct: 353 NSAADILKDGGELIYSTCTITDKENTNNIEKFLKERKQF----KVEKLYIPENVSGDYDK 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +G+          I+     MD F+ + L++
Sbjct: 409 LDGF---------CINYKEEIMDNFYIIKLKK 431


>gi|119961729|ref|YP_947575.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter
           aurescens TC1]
 gi|119948588|gb|ABM07499.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter
           aurescens TC1]
          Length = 516

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 168/471 (35%), Gaps = 46/471 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLV+  +L  V  +      +L     +     L +RD      +    LR     DA
Sbjct: 60  PARLVAFEVLRAVASEDAYANLVLPARIREHR---LDRRDAGFATELSYGALRGQGTYDA 116

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L   +   L +   ++   LR+   Q+L + V  +A +D  V  A+        + L+N
Sbjct: 117 ILARCVDRPLEQLDPAILDALRIGAHQLLSMRVPAHAALDQTVGLARAVIG-AGPSALIN 175

Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENFYGKE-----RVLAI 168
           ++LR+V+   +               +  A     PEW    L             + A+
Sbjct: 176 AVLRKVTAHSMGEWLEILLDDESDETKIAALRHAHPEWIVRALRQSLVNHGRPKTEIDAL 235

Query: 169 SDACISPLYIDLTVKFDIETWAHKLN--AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            +A  +   ++L     +       +  A                +        G   VQ
Sbjct: 236 LEADNAAPVVNLVALPGLGDLDEAFDHGATAGELVEDSALSAGGDLGRFESVRRGTTRVQ 295

Query: 227 DASASIPVQL-------FGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRR 275
           D  + +  +                 LDLCA PGGK A L       GA + A + +  R
Sbjct: 296 DVGSQLVARALAGVELGESPAQGERWLDLCAGPGGKAALLAALAYRDGATLLANEPAPHR 355

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRD 333
            + ++  L  +   A  +   D  +   ++   FD VLVD PCS  G +RR P+  W R 
Sbjct: 356 AKLVQQALSAVPSEAWTVRTGDGREVGAEQPETFDRVLVDVPCSGLGALRRRPESRWRRS 415

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
             DI      QR LL   +  VKPGG+V +  CS    ++  VV  VL        L   
Sbjct: 416 PKDIGDLGPLQRDLLKSALDAVKPGGVVAYVTCSPHPAETTAVVTDVLAKREDLELLDAG 475

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            +    S+  ++    E   ++ P +           D  F   +R+  +P
Sbjct: 476 QALDDVSLTGSLGAGHELTAQLWPHV--------HQTDAMFMAIIRK--KP 516


>gi|118617418|ref|YP_905750.1| Fmu protein [Mycobacterium ulcerans Agy99]
 gi|118569528|gb|ABL04279.1| Fmu protein [Mycobacterium ulcerans Agy99]
          Length = 457

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 108/463 (23%), Positives = 172/463 (37%), Gaps = 46/463 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  + + L  V  +      +L     +   R ++ RD  L   +     R    +DA
Sbjct: 15  PARGAAFNALRAVSERNAYANLVLPALLRE---RGITGRDAALATELTYGACRARGLLDA 71

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++      S       L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN
Sbjct: 72  IIGAAAGRSPEAIDPFLLDLLRLGAYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVL--AISD 170
           ++LR ++    +                  A +   P W  +   +  G       A+  
Sbjct: 131 AVLRTIADRDEQSWVQELAPDPRRDPVGHAAFVHTHPRWIAQAFADALGPSAAELDAVLA 190

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +         A ++   +       +  L      L    +G   VQD
Sbjct: 191 SDDERPQVHLAARPGVLTAAALADEVRGTVGRYSPYAVYLLGGDPGLLAPVRDGQALVQD 250

Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKL 279
             + +  +              LDLCA PGGKTA      + +GA+VTA++ S  R + +
Sbjct: 251 EGSQLVARALTLAPVEGDSGRWLDLCAGPGGKTALLAALGVATGARVTAVEPSSHRADLV 310

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             N         D++  D      + +FD VLVDAPC+  G +RR P+  W R   D+  
Sbjct: 311 ADNT---GGLPVDLVRGDGRYTDLEPVFDRVLVDAPCTGLGALRRRPEARWRRQPSDVPT 367

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               QR+LL   I+  +PGG+V ++ CS    ++  VV   LR  P     V        
Sbjct: 368 LVKLQRELLAAAINLTRPGGVVFYATCSPHLAETVGVVADALRRHP-----VDALDTRAL 422

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +   L    ++++ P           G D  FA ALRR  
Sbjct: 423 FEPITEGLGEGPYVQLWPH--------RHGTDAMFAAALRRRA 457


>gi|313496438|gb|ADR57804.1| RsmB [Pseudomonas putida BIRD-1]
          Length = 436

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 124/443 (27%), Positives = 195/443 (44%), Gaps = 42/443 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  + SL   L  +        + +RD+ L + +   T R+ PR+D +   +L      
Sbjct: 14  VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               +Q LL V + Q+ Y  +  +A +   V  A + K+      L+N++LRR  RE  E
Sbjct: 69  ADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127

Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190
               + +     +  P W ++ L+ F+  E+  AI  A  +   + L V       + + 
Sbjct: 128 LLAGMERDPVVRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186

Query: 191 HKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +     +      +      +  LPGFAEG   VQD +A +   L        
Sbjct: 187 ALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQR 246

Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299
           VLD C APGGKT  L+ + A    V A+D+  +RL ++R NLDRL L A        D  
Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLAHVVAIDLEAKRLTRVRENLDRLQLDAELIACDARDTA 306

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +LL      ++ GG
Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALATLQGELLDALWPTLEVGG 366

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           +++++ CS    ++ EV++  L  +P   EL     A  +       L+ EG        
Sbjct: 367 MLLYATCSSLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQEG-------- 418

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
                    G DGF+   L ++ 
Sbjct: 419 ---------GHDGFYYAKLIKIA 432


>gi|87201108|ref|YP_498365.1| Fmu (Sun) [Novosphingobium aromaticivorans DSM 12444]
 gi|87136789|gb|ABD27531.1| Fmu (Sun) [Novosphingobium aromaticivorans DSM 12444]
          Length = 419

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 145/440 (32%), Positives = 209/440 (47%), Gaps = 34/440 (7%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ +R  +  LL  V+R+   L                   D+ L  AI    LR++  
Sbjct: 11  PGVASRRAALRLLDAVLRRGDPLDQAAPPVLRGIER----GADRALALAIAQEALRWMAD 66

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DA++D      LP      + +LR+ +AQ L LD+  +AVV   +         R  A 
Sbjct: 67  LDALIDGATRQILPE-DAKARSVLRIMLAQALRLDMPGHAVVATGLPLL--MGGPRRLAH 123

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            V S + +      E          +P     R +  +  +RV  I+     P  +DLT+
Sbjct: 124 GVFSAVTKGDARLPE-------APTLPPAVAARWQAAWP-DRVDGIARGLAEPPPLDLTL 175

Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +   ET  WA +L  + L  G +R+     +I +LPGFAEG WWVQD +AS+P +L G  
Sbjct: 176 RDPAETAQWAERLGGMSLAPGHVRIARA-GAIEALPGFAEGAWWVQDLAASVPARLLGAG 234

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
                LDLCAAPGGKT QL  +G  VTALD S RR+E+L  NL R  L AE +   DA  
Sbjct: 235 EGRRALDLCAAPGGKTLQLAAAGWSVTALDKSARRVERLEDNLKRSQLEAEVV-VADALK 293

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           + P+  FDA+L+DAPCS+TGT RRHPDVL      D  +    Q+ +L +   ++ PGG 
Sbjct: 294 WQPEVKFDAILLDAPCSATGTCRRHPDVLHRNPGID--ELVALQKAMLERAAGWLAPGGR 351

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CSL+ ++ E             +  +P+          A     +GW R  P ML
Sbjct: 352 LVYAVCSLEPEEGEAQAAAF-----TGLAPLPIGDDELPGGLKA----ADGWFRSDPGML 402

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   G+DGFFA    +
Sbjct: 403 ADA----GGIDGFFAARWVK 418


>gi|148545339|ref|YP_001265441.1| sun protein [Pseudomonas putida F1]
 gi|148509397|gb|ABQ76257.1| sun protein [Pseudomonas putida F1]
          Length = 436

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 195/443 (44%), Gaps = 42/443 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  + SL   L  +        + +RD+ L + +   T R+ PR+D +   +L      
Sbjct: 14  VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               +Q LL V + Q+ Y  +  +A +   V  A + K+      L+N++LRR  RE  E
Sbjct: 69  ADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127

Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190
               + +     +  P W ++ L+ F+  E+  AI  A  +   + L V       + + 
Sbjct: 128 LLAGMERDPVVRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186

Query: 191 HKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +     +      +      +  LPGFAEG   VQD +A +   L        
Sbjct: 187 ALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQR 246

Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299
           VLD C APGGKT  L+ + A    + A+D+  +RL ++R NLDRL L A        D  
Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLAHMVAIDLEAKRLTRVRENLDRLQLDAELIACDARDTA 306

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +LL      ++ GG
Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALATLQGELLDALWPTLEVGG 366

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           +++++ CS    ++ EV++  L  +P   EL     A  +       L+ EG        
Sbjct: 367 MLLYATCSSLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQEG-------- 418

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
                    G DGF+   L ++ 
Sbjct: 419 ---------GHDGFYYAKLIKIA 432


>gi|72383594|ref|YP_292949.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus
           str. NATL2A]
 gi|72003444|gb|AAZ59246.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus
           str. NATL2A]
          Length = 438

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 190/469 (40%), Gaps = 61/469 (13%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK G++AR  +  ++  V          L+  +   +F+ +   D+ L+  +    +R  
Sbjct: 1   MK-GLDARKAAWDVIQAV-GGGAFADVALERIFNLYSFKSI---DKGLITELSYGAIRQR 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
             +D  +D++      ++   L+ LL + + Q+L +  +   A ++  VE AK     + 
Sbjct: 56  YYLDCWIDYLGKVPAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAKTYHL-KK 114

Query: 120 FAKLVNSILRRVSREK---------IELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
            A +VN ILR   R K               +A    +P W  + L  + G E    I+ 
Sbjct: 115 LAPVVNGILRSALRSKERGLLLPKSNNPSLELAKNESLPLWLADELIKWKGLEDAKKIAK 174

Query: 171 ACISPLYIDLTVKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAE 220
           A      ID+ V                      A+     G+ ++         PG+ E
Sbjct: 175 AFNCISPIDIRVNRLRADLKEVKEIFDSCGIHNQAIPNCPYGLEVRAGVGEPRKWPGYEE 234

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G W VQD S+ +     G L    +LD CAAPGGK+  +   I +   + ++D S RR +
Sbjct: 235 GKWSVQDRSSQLIAPSLGPLPGEKILDACAAPGGKSTHIAELINNEGNLWSVDRSSRRSK 294

Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           K+  N +RL      I+  D+      +   K  FD +L+DAPCS  GT+ RHPD  W  
Sbjct: 295 KILANSERLGTKCLQILVADSNELLLKNPDWKGFFDRILIDAPCSGLGTLARHPDARWRM 354

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
           + D+I +    Q +LL      +K GG +V+S C++  +++   ++  L+S    +    
Sbjct: 355 NQDNIQQLVAVQSQLLNSLAPLLKNGGKLVYSTCTIHPEENSHQIKNFLQSKSEFLL--- 411

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                            E   +I P             DGF+   L +L
Sbjct: 412 -----------------EYEKQIWPGEG-------DNGDGFYISVLNKL 436


>gi|302866833|ref|YP_003835470.1| Fmu (Sun) domain-containing protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302569692|gb|ADL45894.1| Fmu (Sun) domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 549

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 96/463 (20%), Positives = 164/463 (35%), Gaps = 44/463 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   ++ V R       +L     +     L+ RD      +   TLR    +DA+
Sbjct: 103 PRQIAYEAIAAVHRDDAYANLVLPAMLRE---AGLTGRDAAFATELTYGTLRHTGTLDAI 159

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       + R    ++  LR+   QIL+  V  +A V   V+  +            N+
Sbjct: 160 VTDAAGRDVQRIDPPVRDALRLGAYQILHTRVPAHAAVSSTVDLVRSV--GPGATGFANA 217

Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDA 171
           +LR ++    +                 +A     P+W         G +      +   
Sbjct: 218 VLREITSRDADAWVAKLAPAQETDPIGHLALAYSHPQWIVRSFAEALGADMGETTRLLIE 277

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                 + L  +    D    A ++           +     +   LP  A+G   VQD 
Sbjct: 278 DNERPPVHLCARPGLADPVALADEVGGAPGAFSPYAVYLPGGAPGDLPAVADGRAHVQDE 337

Query: 229 SASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLR 280
            + +             +   LDLCA PGGK     A     GA++TA++V++ R   + 
Sbjct: 338 GSQLVADALVAAPLDGPDGRWLDLCAGPGGKSGLLGALAATRGARLTAVEVAEHRARLVA 397

Query: 281 CNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
                L +         + +    P++ FD VLVDAPC+  G +RR P+  W R   D+ 
Sbjct: 398 QATRGLPVTVVHTDGRTVGSDPKLPEEHFDRVLVDAPCTGLGALRRRPESRWRRQPSDLP 457

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                QR+LL  G+   +PGG+V +  CS    ++   V +  R     V+ V       
Sbjct: 458 PLTRLQRELLTAGLRAARPGGLVAYVTCSPHVVETHVTVTEAARRCGFDVDFVDARPLLP 517

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +     L     +++ P           G D  F   LRR+
Sbjct: 518 AGMP---GLGDGPTVQLWPH--------RHGTDAMFLAVLRRV 549


>gi|29655200|ref|NP_820892.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
           RSA 493]
 gi|161829958|ref|YP_001597731.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
           RSA 331]
 gi|1169714|sp|P45679|RSMB_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|29542472|gb|AAO91406.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii RSA 493]
 gi|161761825|gb|ABX77467.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
           RSA 331]
          Length = 430

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 215/456 (47%), Gaps = 48/456 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++ L++ V++K+ SLT LL            ++++Q L++ +   TLR+  ++ 
Sbjct: 1   MNTRATTAILVNQVVQKKCSLTALLSA----------NKKNQSLIQELCYGTLRWYFKLK 50

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + +L + L  K + +  L+     Q+ YL++  + +V+  V  A+  K+      L+
Sbjct: 51  LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKP-WAKGLI 109

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N +LRR   EK        + I G    P WF + ++  +      + I++    P+ + 
Sbjct: 110 NKLLRRFIAEKDELLTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARPPMTLR 169

Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           + + K   E +   L+   +    +           P S+  LPGF EG  ++QDA+   
Sbjct: 170 VNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQF 229

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289
              L    NN +VLD CAAPG KT+ ++     +    A+D +K+RL +++ N+ RL L 
Sbjct: 230 AAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLR 289

Query: 290 AEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            E +  +         +   +LFD +L+DAPCS+TG IRRHPD+   R   DI +    +
Sbjct: 290 QEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKK 349

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +LL    + +K GG +++S CS+   ++E+V+++ L +    VEL P N          
Sbjct: 350 LQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTH-DKVELSPTNV--------- 399

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 G +++      +        DGF+   L +
Sbjct: 400 -----HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 428


>gi|168704061|ref|ZP_02736338.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Gemmata
           obscuriglobus UQM 2246]
          Length = 465

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 109/433 (25%), Positives = 172/433 (39%), Gaps = 61/433 (14%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V++ +L+    +      L+D          LS +D+  V  +V   +R    +DA+
Sbjct: 5   ARQVAADVLNRSRSRDGFAAELVDDAVNA---ANLSPQDRRFVTQLVFGVIRRGGTLDAL 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +       +  +  LLR+   Q+ +L  V  +A V   VE A+           VN
Sbjct: 62  LKPFIHLPTHAVQDRVWDLLRLGAFQLTFLTHVPKHAAVHETVELAE-HVGAPKAKGFVN 120

Query: 126 SILRRV---------------------------------------------SREKIELLQ 140
            +LRR+                                                  +   
Sbjct: 121 GVLRRIAELTTDEFTDAPGAAAVPFALVESAPTPSEGGGRGSYRRLTKPVLPDPATDPAP 180

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVM 197
             A     P+W   R    YG +  + +     +   + + V       E++  +L A  
Sbjct: 181 YFAAAFSFPQWLANRWLKRYGVDECVRLGFWFNAAPPLWVRVNKLRASRESYRIQLAAQT 240

Query: 198 LPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           +        +        SI  LPG+AEG + VQD S+ +     G    + +LD CAAP
Sbjct: 241 IEVEPGEHPQALRFSQHHSIRDLPGYAEGDFAVQDHSSMLVASALGVQPGMRILDACAAP 300

Query: 253 GGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           GGKT  L+        +TA D+  +RLE +     R+ L   + + +   +  P   FDA
Sbjct: 301 GGKTTHLMELMDGRGHITACDIDPKRLETVAALAQRMRLTGIETVLLKDNEEFPAGPFDA 360

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
            LVD PCS+TG I R P+V W    ++       Q +LL+     VKPGG VV+S CS++
Sbjct: 361 ALVDVPCSNTGVIGRRPEVRWRLKPNEFEYLIRLQTRLLILAADRVKPGGAVVYSTCSIE 420

Query: 370 KQDSEEVVQKVLR 382
             ++E VV+ VLR
Sbjct: 421 PDENEGVVKAVLR 433


>gi|328950801|ref|YP_004368136.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884]
 gi|328451125|gb|AEB12026.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884]
          Length = 417

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 172/435 (39%), Gaps = 34/435 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++ H+L  V  +       LD    ++    LS  D+ L   +   TLR L  +D +
Sbjct: 15  ARGLALHVLEAV-ARGQYAQPTLDRALQNTR---LSPEDRGLATHLTYGTLRHLRYLDHL 70

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   L +        ++  LR    + L+L+   YAVV   VE+ KR       A L N+
Sbjct: 71  LAPHLNAP-HHLPPPVRWALRAGAYERLFLEHPAYAVVHSWVEETKR--RAPRLAGLTNA 127

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD- 185
           +LRRV+  +       A    IP++  +    F+G       ++    P  + +T     
Sbjct: 128 VLRRVTHREAPP----AVRLSIPDFLHDHWRIFFGDA---GFAEGFNQPEPLWITAYPGA 180

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            E    +  A         L      + +L  + +G+   Q+ ++    QL        V
Sbjct: 181 REALEAQGVAYRPGPVPDSLALEGARLRALEAYRQGLLQPQNPASLFAAQLLDPPPGAKV 240

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           LDL    G K   L   GA+V + D + +R    R    R  L        D     P+ 
Sbjct: 241 LDLAGGAGLKALYLAARGARVVSYDKNPKRQATGRATPARTGLR-VAFKTQDLTRPIPET 299

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
               VL+DAPC+ TGT R +P++ +     D    +  QR LL      V+PGG +V++ 
Sbjct: 300 AP-FVLLDAPCTGTGTFRGNPEIRYRLRPQDPQALSTLQRALLETAARAVEPGGRLVYAV 358

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+L + + E V +  L   P    L P    +        AL  +  + + P        
Sbjct: 359 CTLTEAEGEAVTRAFLEQHP-EFTLEPFTPPFP-------ALKQDLGVYVRP-------- 402

Query: 426 VSSGMDGFFAVALRR 440
             +G+DGF+    R+
Sbjct: 403 -ENGLDGFYYARFRK 416


>gi|315503248|ref|YP_004082135.1| fmu (sun) domain protein [Micromonospora sp. L5]
 gi|315409867|gb|ADU07984.1| Fmu (Sun) domain protein [Micromonospora sp. L5]
          Length = 541

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 95/463 (20%), Positives = 163/463 (35%), Gaps = 44/463 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++   ++ V R       +L     +     L+ RD      +   TLR    +DA+
Sbjct: 95  PRQIAYEAIAAVHRDDAYANLVLPAMLRE---AGLTGRDAAFATELTYGTLRHTGTLDAI 151

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       + R    ++  LR+   QIL+  V  +A V   V+  +            N+
Sbjct: 152 VTDAAGRDVQRIDPPVRDALRLGAYQILHTRVPAHAAVSSTVDLVRSV--GPGATGFANA 209

Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDA 171
           +LR ++    +                 +A     P+W         G +      +   
Sbjct: 210 VLREITSRDADAWVAKLAPAPETDPIGHLALAYSHPQWIVRSFAEALGGDMGETTRLLIE 269

Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                 + L  +    D    A ++           +     +   LP   +G   VQD 
Sbjct: 270 DNERPPVHLCARPGLADPVALADEVGGAPGAFSPYAVYLPGGAPGDLPAVTDGRAHVQDE 329

Query: 229 SASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLR 280
            + +             +   LDLCA PGGK     A     GA++TA++V++ R   + 
Sbjct: 330 GSQLVADALVAAPLDGPDGRWLDLCAGPGGKSGLLGALAATRGARLTAVEVAEHRARLVA 389

Query: 281 CNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
                L +         + +    P++ FD VLVDAPC+  G +RR P+  W R   D+ 
Sbjct: 390 QATRGLPVTVVHTDGRTVGSDPKLPEEHFDRVLVDAPCTGLGALRRRPESRWRRQPSDLP 449

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                QR+LL  G+   +PGG+V +  CS    ++   V +  R     V+ V       
Sbjct: 450 PLTRLQRELLTAGLRAARPGGLVAYVTCSPHVVETHVTVTEAARRCGFDVDFVDARPLLP 509

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +     L     +++ P           G D  F   LRR+
Sbjct: 510 AGMP---GLGDGPTVQLWPH--------RHGTDAMFLAVLRRV 541


>gi|227513475|ref|ZP_03943524.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
           ATCC 11577]
 gi|227083348|gb|EEI18660.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
           ATCC 11577]
          Length = 444

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 101/463 (21%), Positives = 187/463 (40%), Gaps = 42/463 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    N R ++   L             ++     +    +S  D+ L   IV   ++ 
Sbjct: 1   MKYQTNNPRELAVRTLLR-TSGGSYSNLQINAVIEST---SMSDVDKALFTNIVYGVIQH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN- 117
              ++  L   L     + +  +++LL  ++ Q+ YLD V   A+ D +++ AK    + 
Sbjct: 57  RMTLEYQLVPFL-KDPEKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDG 115

Query: 118 -----RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
                      ++    R   +  + +++I+    +PEW    +E   GK++   +  + 
Sbjct: 116 TRRFVTGILHQMDRKGVREPDKIKDPVKKISIKYSVPEWLVSLIEGQLGKQKADQVFKSL 175

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWW 224
                  +              +L      T         +      +V    F  G+  
Sbjct: 176 NQTPKQSVRFNKAKTTKSKLTDQLTQAGFQTEDSLVAGEGIIVDKGQVVHSAFFENGLLT 235

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCN 282
           +QD SA +PV+      +  +LD C+APGGKT Q+   +   +V ALD+ + +L+ +  N
Sbjct: 236 IQDESAMLPVESMSIQPDDLILDACSAPGGKTTQIAANLKNGRVIALDIHQNKLKNVIRN 295

Query: 283 LDRLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             RL +      +        +    ++FD +LVDAPCS  G +RR P++ + +   DI 
Sbjct: 296 AKRLGVDGVVETQALDARKVDEKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADIN 355

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             +  Q ++L      VK GG + +S C++ +Q+++EV+++ L + P             
Sbjct: 356 HLSQIQLQILEAVAPKVKTGGTITYSTCTIVQQENQEVIKQFLDAHPDF-------QIEP 408

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              D+ +     G I I PD          G DGFF  +L R 
Sbjct: 409 TKTDLNLTTDENGMINIYPDDF--------GSDGFFVCSLVRK 443


>gi|213965561|ref|ZP_03393755.1| Fmu protein [Corynebacterium amycolatum SK46]
 gi|213951720|gb|EEB63108.1| Fmu protein [Corynebacterium amycolatum SK46]
          Length = 485

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 160/459 (34%), Gaps = 42/459 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R V+  +L+ V         LL           L  RD      +   TLR    +DA
Sbjct: 43  QPRKVALKVLADVRENDAYANLLLPKLLKAHK---LKGRDAAFATELTYGTLRAEGLLDA 99

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V++      L      +  +LR+   Q+L   V  YA VD +V    +          VN
Sbjct: 100 VIEASSSRPLSDIAGPVMDVLRLGTYQLLRTRVDAYAAVDTSVRSVAKVAGP-GARGFVN 158

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170
           +ILR+VS +                    +A     P W         G +   +     
Sbjct: 159 AILRKVSSQTESEWVSEIAPDPATDPIGYVAMKHAHPRWIAMEFARALGAQAGELQQALA 218

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           A  +   + L  +      E  A        P     ++    +   L    +G+  VQD
Sbjct: 219 ADDARPLVHLVARPGEITAEELALITGGEEGPWSPYCVRLDSGAPGELEPVRQGLAAVQD 278

Query: 228 ASASIPVQLFGTLNN-----LSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRC 281
             + +  +               LDLC+ PGGK+A +    A   A LD  +    +   
Sbjct: 279 EGSQLIARAVTKAPVAGEDSGRWLDLCSGPGGKSAFIGGIAAIEGAKLDAVEVSATRAEL 338

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
                      +   D  D   +  FD +LVDAPCS  G++RR P+  W +   D+    
Sbjct: 339 VKKATAGLPVTVTVADGRDTGLETGFDRILVDAPCSGLGSLRRRPEARWRKSPSDLNSLT 398

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL + +   +PGGI+V+S CS   +++  +V + +       EL        + +
Sbjct: 399 TLQFELLSEAVRLARPGGIIVYSTCSPHLRETRGIVDRAV------TELPVTELNAHELV 452

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                + P   +++ P           G D  F   LR+
Sbjct: 453 APMTDVGPYPSVQMWPH--------RHGTDAMFFSVLRK 483


>gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
           PG50]
 gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
           PG50]
          Length = 423

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 193/454 (42%), Gaps = 53/454 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M +R ++  +L  V   +     LL+     +    L+Q+D+  V  +V+  +     +D
Sbjct: 1   MTSRSIAFDILKKVFINKAYSNVLLNKISKKN----LNQQDKDFVFNLVHGVISNKIHLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L  ++   + +    LQ +L +S+ Q++YL+ + +YA+V+ +V   K    ++  A  
Sbjct: 57  YLLAKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 112

Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+IL +  R K + L+            +          L   Y K+ V  I       
Sbjct: 113 INAILNKFLRFKDKYLEINLANKDLELCILHSFSYELYLMLIKQYDKDIVNQIVVNNQQI 172

Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
             + + +     T     N      ++  T         ++I++   +  G   +QD ++
Sbjct: 173 PKLYIRINTLKITSDQLFNKYKDIYLLEKTNVNDCLIANKTIINSDLYKNGFITIQDKAS 232

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  Q+     N  VLD+C+APGGK   L +   +   + A ++++ +++ +R N++RL+
Sbjct: 233 ILVSQILNPSLNAKVLDICSAPGGKLTHLSMILKNTGNIIANEINESKIKLIRENINRLN 292

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +I MDA     K+ FD +L+DAPCS  G  +R P++    D   +      Q +L
Sbjct: 293 CLNISVINMDARKIKQKQEFDYILLDAPCSGFGVFKRKPEIKLRFDQTQLNNIINLQEEL 352

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K  G +V+S C++++ +++  + K L      V+L                 
Sbjct: 353 LESAYYNLKNNGEMVYSTCTINQDENQNQITKFLNRHKDMVKL----------------- 395

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                        ++I G     DGF+   L++L
Sbjct: 396 -----------YEKQIFGFEENTDGFYICKLKKL 418


>gi|294625236|ref|ZP_06703876.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294666265|ref|ZP_06731516.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292600464|gb|EFF44561.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292603974|gb|EFF47374.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 436

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 204/453 (45%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L L            RD+ LV AI    +R  P
Sbjct: 7   TAGVASRLAAARVLTAVFDQGRSLKAELALTLPGIG----DPRDRALVEAICFAVIRRRP 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L   L  +LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 63  AYELALRQWLERALPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   A  +  P W +++L   +  +   +  + A ++P+++ +
Sbjct: 122 GMVNAILRRAQREGFPAV---ADDAGWPSWLRKQLRADWGDRAEAIFTASAQMAPMWLRV 178

Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D  T+  +L  + +      +            +  LPGFAEG   VQD SA   
Sbjct: 179 QRSRTDPATYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQDGSAQQV 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                   +  VLD CAAPGGK A       G ++ ALDV  RRLE+++  L R    A+
Sbjct: 239 ADALTLARSARVLDACAAPGGKAAHLLERHPGLQLVALDVDARRLERVQQTLQRTVPNAQ 298

Query: 292 DIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             ++     D   +   + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 299 VALQAADAADTEAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V+  L+ +P      PL + +  +       
Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQRTP-DARAQPLGAQFGHAAGAG--- 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +     +  DGFF   L +
Sbjct: 415 -------------RQRFPGEAHCDGFFYALLLK 434


>gi|87125560|ref|ZP_01081405.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           RS9917]
 gi|86166860|gb|EAQ68122.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
           RS9917]
          Length = 454

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 181/471 (38%), Gaps = 67/471 (14%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+  R V+  +L  V          L+          LS  D+ L   +    +R   
Sbjct: 13  TTGLGPRRVAWEVLEAV-AAGAYADVALERALR---GAGLSGADRGLATELAYGAIRRRL 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA LD +      ++   L+ LL V + Q+ ++  +   A V+  VE AK  +  R  
Sbjct: 69  WLDAWLDRLGRVPARKQPPRLRWLLHVGLYQLFWMERIPAAAAVNTTVELAKHHRLAR-L 127

Query: 121 AKLVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFY------GKERV 165
           A +VN +LR                +  +R++    +P WF   L  +            
Sbjct: 128 APVVNGLLRAALRARQAGDTLAMPADAAERLSLEQSLPLWFCRELLAWTGDVGCAAIPAA 187

Query: 166 LAISDACISPLYIDLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSL 215
             I+ AC     +DL V     T                 +     G+++      +   
Sbjct: 188 ERIAAACNQVPPLDLRVNRLRSTPEAVAAAFAAAGLATRPIEGCGSGLQVLGAAGDLRQW 247

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVS 272
           PG+AEG W VQD +A     L        +LD CAAPGGK+  L   I    +V A+D S
Sbjct: 248 PGYAEGHWCVQDRAAQWVAPLLEPRPGERLLDACAAPGGKSTHLAELIGDAGEVWAVDRS 307

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPD 327
             RL++L  N  RL     + +  DA +   ++      F  VL+DAPCS  GT+ RH D
Sbjct: 308 AGRLQRLAANAARLGCGCVNALAADACELLQERPQWRGAFQRVLLDAPCSGLGTLARHAD 367

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
             W      I +    Q +LL   ++ + PGG +V++ C++   +++  +   L + P  
Sbjct: 368 ARWRVTPATITELLPLQARLLEAMLALLAPGGRLVYATCTIHPAENQNQIATFLAAHPE- 426

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                                      +T    ++     +G DGF+A  +
Sbjct: 427 ---------------------------LTLHSEQQRWPDPAGGDGFYAAVI 450


>gi|297626327|ref|YP_003688090.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922092|emb|CBL56660.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 439

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 111/452 (24%), Positives = 170/452 (37%), Gaps = 35/452 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  +L  V R+             D   + L+ RD   V  +   T R L   DA+
Sbjct: 4   PRRTAFEILREVDRRGAYANLATRQAIND---QELTGRDAAFVTELAYGTCRMLGTYDAI 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L       L   +  +   LR+   Q+L + + D A VD  V+ A      R  A L N+
Sbjct: 61  LAQASGRDLNDLQPDIVDALRLGAHQLLGMRIPDRAAVDTTVDLAAIVVGER-VAGLANA 119

Query: 127 ILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           I+R+V+   +E                +S  P+W  +  ++    E V A   A      
Sbjct: 120 IMRKVAAHDLEAWCRQLAYDEQDFRCLVSGHPDWIVDAYQDLLPTEEVDAALAADNIAPV 179

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGG-IRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
             L V+  +      L     PT         P +   L    +G   VQD  + +    
Sbjct: 180 PTLVVRPGLYKRKDLLRDGGDPTRWSPWGVIRPGNPGDLGAVRDGRAGVQDEGSQLICLA 239

Query: 237 FGTLNNLS---VLDLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
               +       LD+CA PGGK+A         GA +TA +V   R   +  +L R    
Sbjct: 240 ATRADIPRDLPWLDMCAGPGGKSALLRGMAPEHGAFLTASEVQPHRAHLVAQSLRRYPAE 299

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             + I  D       +  F  V+ D PCS  G +RR PD  W +D DD+V+    QR LL
Sbjct: 300 GHETICADGTAPAWQRDSFGLVMADVPCSGLGALRRRPDARWRKDVDDLVELGDLQRSLL 359

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
              +   +PGG+V +  CS  + +S ++V   L  +     L     A    +  A A +
Sbjct: 360 SSALDACRPGGVVAYVTCSPHRMESADIV---LADTSRFEILDA--PALIPEVPGAAAST 414

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +I++ P           G D  F   LR+
Sbjct: 415 DARFIQLWPH--------RHGTDAMFMALLRK 438


>gi|50086581|ref|YP_048091.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ADP1]
 gi|49532555|emb|CAG70269.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ADP1]
          Length = 434

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 199/454 (43%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            + +N R      L  V ++  SL+ +L  +  D     + +RD+ L   +V  TLR   
Sbjct: 8   STELNLRAQVVATLLKV-QQGQSLSGILHQQLND-----IPERDRALFHELVLGTLRQWY 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + ++   +L   L     +++  L + + Q+L   +  +A +   V  A +       +
Sbjct: 62  ALKSITLPLLTKPLN--NETVETCLYLGLYQVLCTRIPAHAAISETVT-ATKQLGFHALS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            +VN+ILRR +RE       +     +P W  +RL+  +   ++  +         + L 
Sbjct: 119 GIVNAILRRATRETESFKNSLQQAHGLPSWMYKRLKKDWP-AQLNELCQQLKYSAPLTLR 177

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +       + +  KL A  +      + E          I  LPGF +G + VQD  A +
Sbjct: 178 INQRHIGRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L   L +  +LD CAAPGGKTA      + A + ALD    RL ++  NL RL L  
Sbjct: 238 CATLLPDLTDRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQ 297

Query: 291 ED--IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I+  DA  +   +  D +++DAPCS+TG +RRHPD+   R + DIV++   Q+++L
Sbjct: 298 HHLEILAADATTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +K GG +++  CS+ K ++E+ + +     P   E+          I+    + 
Sbjct: 358 QHLWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIK---------IEADWGIE 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P        VS   DGF+   + ++ 
Sbjct: 409 QIHGRQLLP--------VSGQGDGFYYCRIEKVA 434


>gi|269218512|ref|ZP_06162366.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269211623|gb|EEZ77963.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 534

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 104/467 (22%), Positives = 181/467 (38%), Gaps = 46/467 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLV+  +L  V         +L +E   +    L   D      +   TLR   R DA
Sbjct: 68  AARLVAFEVLRAVDEDDAYANLVLPVEIARAGLNKL---DAAYATNLCYGTLRMRGRWDA 124

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++        +      +  LLR+   Q+L ++   +A +   V  A+     +     V
Sbjct: 125 IISRCAKGRRIYDIDPPVLDLLRMGCEQLLAMETPPHAAIHETVVIARNFFG-QGTGGFV 183

Query: 125 NSILRRVSREKIELLQ-----------RIAGISIIPEWFKERLENF-----YGKERVLAI 168
           N++LRR+S +  +  +            ++     P W  E LE         ++ V ++
Sbjct: 184 NAVLRRISEKAGQWPEIVRSSTASRTEFLSLWHSHPRWIVEALEESLEASGRSRDDVESV 243

Query: 169 SDACISPLYIDLTVK-FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGV 222
             A  +P  + L  +    E  A ++ A  +      L              L    +G+
Sbjct: 244 LAAHNAPAKVALVARAISPEALAERVEAAKMEAFPGYLMPNAVLLGRGDPHRLHPVRDGL 303

Query: 223 WWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTA----QLIVSGAKVTALDVSKR 274
             VQD  + +   LF        +   LD+CA PGGKTA         GA++ A +  + 
Sbjct: 304 AGVQDEGSQLIAALFAAAPIEGKDELWLDMCAGPGGKTATLAAIAQGRGARIHANEPQEH 363

Query: 275 RLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           RL+ +  +++      A  + +           +D VLVDAPCS  G +RR P+  W +D
Sbjct: 364 RLDLVAASVEPWEDTVALRLGDGRELGTQEPDAYDRVLVDAPCSGLGALRRRPEARWRKD 423

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
             DI   A  QR+LL      ++PGG +V+S CS    ++ +VV+  L +      L   
Sbjct: 424 PKDIPGLAKLQRQLLASAFKALRPGGALVYSTCSPALAETRDVVRDFLAAHGRAKLLDAG 483

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             A    + +    + +G +++           +   DG F   + +
Sbjct: 484 EVAN--RVAIRDVSARDGMVQLW--------ADADCTDGMFIALITK 520


>gi|227510466|ref|ZP_03940515.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190118|gb|EEI70185.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 444

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 101/463 (21%), Positives = 187/463 (40%), Gaps = 42/463 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    N R ++   L             ++     +    +S  D+ L   IV   ++ 
Sbjct: 1   MKYQTNNPRELAVRTLLR-TSGGSYSNLQINAVIEST---SMSDVDKALFTNIVYGVIQH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN- 117
              ++  L   L     + +  +++LL  ++ Q+ YLD V   A+ D +++ AK    + 
Sbjct: 57  RMTLEYQLVPFL-RDPEKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDG 115

Query: 118 -----RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
                      ++    R   +  + +++I+    +PEW    +E   GK++   +  + 
Sbjct: 116 TRRFVTGILHQMDRKGVREPDKIEDPVKKISIKYSVPEWLVSLIEGQLGKQKADQVFKSL 175

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWW 224
                  +              +L      T         +      +V    F  G+  
Sbjct: 176 NQAPKQSVRFNKAKTTKSKLTDQLTQAGFQTEDSLVAGEGIIVDKGQVVHSAFFENGLLT 235

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCN 282
           +QD SA +PV+      +  +LD C+APGGKT Q+   +   +V ALD+ + +L+ +  N
Sbjct: 236 IQDESAMLPVESMSIQPDDLILDACSAPGGKTTQIAADLKNGRVIALDIHQNKLKNVIRN 295

Query: 283 LDRLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             RL +      +        +    ++FD +LVDAPCS  G +RR P++ + +   DI 
Sbjct: 296 AKRLGVDGVVETQALDARKVDEKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADIN 355

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             +  Q ++L      VK GG + +S C++ +Q+++EV+++ L + P             
Sbjct: 356 HLSQIQLQILEAVAPKVKTGGTITYSTCTIVQQENQEVIKQFLDAHPDF-------QIEP 408

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              D+ +     G I I PD          G DGFF  +L R 
Sbjct: 409 TKTDLNLTTDENGMINIYPDDF--------GSDGFFVCSLVRK 443


>gi|104779336|ref|YP_605834.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
           methyltransferase) [Pseudomonas entomophila L48]
 gi|95108323|emb|CAK13017.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
           methyltransferase) [Pseudomonas entomophila L48]
          Length = 436

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 192/443 (43%), Gaps = 42/443 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  + SL   L  +        + +RD+ L + +   T R+ PR+D +   +L      
Sbjct: 14  VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               +Q LL V + Q+ Y  +  +A +   V  A + K+      L+N++LRR  RE  E
Sbjct: 69  ADADVQALLLVGLYQLFYTRIPAHAALGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127

Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190
               + +     +  P W ++ L+ F+  E+  AI  A  +   + L V       + + 
Sbjct: 128 LLASMERDPVVRTAHPRWLQKSLKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186

Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +     +             +  LPGFA+G   VQD +A +   L        
Sbjct: 187 SLLAEAGIQASACQFSRDGIVLAEACDVRGLPGFADGWVSVQDEAAQLSADLLELAPGQR 246

Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299
           VLD C APGGKT  L+ +      + A+D+  +RL ++R NLDRL L A        D  
Sbjct: 247 VLDACCAPGGKTCHLLEAEPGLAHMVAIDLEAKRLARVRENLDRLKLDAELIACDARDTA 306

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   K F  +L+DAPCS+TG IRRHPD+  TR  +DI   A  Q +LL      ++ GG
Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQAEDIPALATLQGELLDALWPTLEVGG 366

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           +++++ CS    ++ EV+   L  +P   EL     A  +       L+ EG        
Sbjct: 367 MLLYATCSSLPTENTEVIDAFLARTPGARELDLATEAGLRQPHGRQLLAQEG-------- 418

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
                    G DGF+   L ++ 
Sbjct: 419 ---------GHDGFYYAKLIKIA 432


>gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8]
 gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8]
          Length = 431

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 115/454 (25%), Positives = 202/454 (44%), Gaps = 41/454 (9%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N RL++  LL    +++      +  E  DS    L  RD+   + +V   +R    +
Sbjct: 2   RTNVRLLAYRLLRKYEKEK-----FISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELL 56

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  ++ +L         +++  LR+   Q+L+++ V DYA V   V+  K    N +F K
Sbjct: 57  DWYINQLLKK--KDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK----NENFKK 110

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN++LRR+          +  +   PEW      +F  +E VL I      PL + L V
Sbjct: 111 LVNAVLRRLRTVPEPKELHL--VYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRV 168

Query: 183 K---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                  E     L                + +++L   +       +G+  VQ  S+ +
Sbjct: 169 NSLAATKEEVIKILAEEGTEAVPGKHAPFSLIVRKLGVPMNDSRVINDGLASVQGESSQL 228

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                     L VLD CAAPGGKT    +L+    K+ A+D+S+ +++ +  +  RL L 
Sbjct: 229 VPFFMELRPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS 288

Query: 290 AEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           + +    DA       +  FD VLVDAPC+S GT R HP+VL   + +D  K +  Q ++
Sbjct: 289 SIETKIADAERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNKEDFEKFSEIQLRM 348

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           + Q    ++ GGI+++S C++ K+++ EVV++ +      VE++ +     K  ++    
Sbjct: 349 VQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DVEVIDIRDKM-KEFEVEGIW 406

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              G++ + PD              F+   LR++
Sbjct: 407 DGYGFL-MLPDETITP---------FYISVLRKM 430


>gi|325983531|ref|YP_004295933.1| sun protein [Nitrosomonas sp. AL212]
 gi|325533050|gb|ADZ27771.1| sun protein [Nitrosomonas sp. AL212]
          Length = 425

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 120/447 (26%), Positives = 203/447 (45%), Gaps = 43/447 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           L ++ ++  V+    SLT +L   +   A   LS++ +  V+ +    LRF  ++ AVLD
Sbjct: 6   LAAASVVGRVLA-GASLTEVLQDVWR--AESSLSKQQRGAVQDLSYGVLRFYGQLGAVLD 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +L   L     SL  LL VS+ Q+ Y  V  + VVD AV  ++   +      +VN++L
Sbjct: 63  ILLKKPLR--DKSLCHLLLVSLYQLQYSRVLPHTVVDQAVSASRCLVKGSGMQGVVNAVL 120

Query: 129 RRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           R   R++ +LL++ A         P+W+ ++L   Y  E   AI  A      + L V  
Sbjct: 121 RNFIRQQEKLLKQAAEKEIGRYSHPQWWVDKLRRQYP-ENFAAILSANNKRPPMTLRVNR 179

Query: 185 DIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDASASIPVQLF 237
              +     + +        L          P S+ SLPGFA G+  VQDA A +   L 
Sbjct: 180 RKISVEAYCDLLAENGMQAELLWPGALRLSQPVSVESLPGFAMGLVTVQDAGAQLAAPLL 239

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEM 296
              + + VLD CAAPGGK+  L+       ++ D   +RL +++ N +RL + +E +I  
Sbjct: 240 DVHDGMRVLDACAAPGGKSTHLLELANISLSVLDNDPQRLIQVQQNFERLRMASERLICG 299

Query: 297 D---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           D      +  K+ +D +L D PCS++G + RHPD+ W R   D+ K A  Q+ +L     
Sbjct: 300 DAANPDAWWDKQPYDRILADVPCSASGVVCRHPDIKWLRRESDLTKFAITQQAILDALWK 359

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++  G +++  CS+  +++   ++K L+      +L    +A                 
Sbjct: 360 ILRKNGKLLYVTCSVFAEENTMQIEKFLKHHSDACQLPLSVAAMIDG------------- 406

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++ PD            DGFF   L++
Sbjct: 407 QLLPDTQ---------HDGFFYTLLQK 424


>gi|21219974|ref|NP_625753.1| putative Sun-family protein [Streptomyces coelicolor A3(2)]
 gi|289772815|ref|ZP_06532193.1| RNA-binding Sun protein [Streptomyces lividans TK24]
 gi|7209232|emb|CAB76894.1| conserved hypothetical Sun-family protein SCL6.29c [Streptomyces
           coelicolor A3(2)]
 gi|289703014|gb|EFD70443.1| RNA-binding Sun protein [Streptomyces lividans TK24]
          Length = 475

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/466 (21%), Positives = 164/466 (35%), Gaps = 45/466 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR----LLSQRDQILVRAIVNVTLRFLP 61
             R+++   L  V  +      +L      +  +        RD  L   +V  TLR   
Sbjct: 22  PVRMLAFEALRAVDERDAYANLVLPPLLRKAREKEGPEKFDARDAALATELVYGTLRRQG 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             DA++   +   L      +  +L + V Q+L   +  +A V  +VE A+    +   A
Sbjct: 82  TYDAIIADCVDRPLREVDPPVLDVLSLGVHQLLGTRIPSHAAVSASVELARVVLGD-GRA 140

Query: 122 KLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--L 166
           K VN++LR+V+R+ ++                 +A +   P W    L +  G  R    
Sbjct: 141 KFVNAVLRKVARDDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIE 200

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGV 222
            +  A      + L  +    T    L       G      +         ++    E  
Sbjct: 201 ELLAADNERPEVTLVARPGRATREELLGEEAAVPGRWSPYAVRLSEGGEPGAVDAVRENR 260

Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274
             VQD  +               +   LD CA PGGK A L       GA + A +    
Sbjct: 261 AGVQDEGSQLVALALANAPLDGPDRRWLDGCAGPGGKAALLGALAAERGAFLLASEKQPH 320

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           R   +   LD      + I             FD VLVD PC+  G +RR P+  W R  
Sbjct: 321 RAGLVARALDGNPGPYQVIAADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRP 380

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           +D+   A  QR LL   +  V+ GG+V ++ CS    ++  VV  VL+  P   EL+   
Sbjct: 381 EDLDGFAPLQRGLLRNALEAVRVGGVVAYATCSPHLAETRAVVTDVLKQHPGT-ELLDAR 439

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   +         +++ P +         G D  +   LRR
Sbjct: 440 PLLPGVPGLGEGPD----VQLWPHV--------HGTDAMYLALLRR 473


>gi|310778567|ref|YP_003966900.1| sun protein [Ilyobacter polytropus DSM 2926]
 gi|309747890|gb|ADO82552.1| sun protein [Ilyobacter polytropus DSM 2926]
          Length = 434

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 104/454 (22%), Positives = 198/454 (43%), Gaps = 37/454 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN +     LL            LL+  + ++    LS+ ++  +  +    +R +  +D
Sbjct: 1   MNVKKRIIKLLGEFED-GKYSNILLNEYFREN---NLSRGEKAFITEVFYGVIRNIIFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             +D      + R    L+ LLR+S  Q  ++   D  V   A E AK+     +  +  
Sbjct: 57  YQIDKRATKKVHR--RWLRNLLRISYYQAYFMRSDDAGVAWEATELAKQKLG-VYVGRFA 113

Query: 125 NSILRRVSREKIEL------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N I+R   RE  +         ++  +   P+WF E++E  YG E    +  +     Y+
Sbjct: 114 NGIVRSFMREMDQEAENLKSQGKMDILYSCPKWFYEKIEKEYG-EETEKLLKSYKKIPYL 172

Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            + V        + E    K+   ++            +++    F EG   VQD S+ +
Sbjct: 173 SVRVNKLKYNEDEFEALLEKMGINIMKQIDSVYYLDSGALIDSKEFKEGKITVQDGSSYL 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             ++ G      VLD C+APG K    A+L+ +  ++TALD+ + +++ L  N   L   
Sbjct: 233 AAKMLGARPGDIVLDTCSAPGSKAVVLAELMENKGEITALDIHQHKIKLLDANAKNLGAK 292

Query: 290 AEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               +++DA       K FD +LVDAPCS  G +R+ P+ L+ +D  ++ + A  Q ++L
Sbjct: 293 IITGVKLDARKVKEQGKKFDKILVDAPCSGYGVLRKKPEALYNKDMTNVEELAKLQYEIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K  G +V+S C++  +++ + VQ+ L+++P            ++ +++     
Sbjct: 353 ESASKSLKEDGELVYSTCTIFNEENTDNVQRFLQNNP-----------EFEVVELEFPDG 401

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            EG   I   ++  ID     +D F+ +  R+ I
Sbjct: 402 VEGHKDILGGLV--IDYKEEFLDSFYIIKFRKRI 433


>gi|167031103|ref|YP_001666334.1| sun protein [Pseudomonas putida GB-1]
 gi|166857591|gb|ABY95998.1| sun protein [Pseudomonas putida GB-1]
          Length = 436

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 193/442 (43%), Gaps = 40/442 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  + SL   L  +        + +RD+ L + +   T R+ PR+D +   +L      
Sbjct: 14  VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               +Q LL V + Q+ Y  +  +A +   V  A + K+      L+N++LRR  RE  E
Sbjct: 69  ADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127

Query: 138 ----LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDLTV-KFDIETWAH 191
               + +     +  P W ++ L+ F+  +   +  ++    P+ + +       + +  
Sbjct: 128 LLASMERDPVVRTAHPRWLQKALKAFWPAQWEAICAANNAHPPMILRVNRRHHSRDAYLA 187

Query: 192 KLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            L    +     +      +      +  LPGFAEG   VQD +A +   L        V
Sbjct: 188 LLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQRV 247

Query: 246 LDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFD 300
           LD C APGGKT  L+ + A    V A+D+  +RL ++R NLDRL L A        D   
Sbjct: 248 LDACCAPGGKTCHLLEAEAGLAHVVAIDLEAKRLIRVRENLDRLKLDAELIACDARDTAS 307

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +LL      ++ GG+
Sbjct: 308 WWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALAALQGELLDALWPTLEVGGM 367

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           ++++ CS    ++ EV+   L  +P   EL     A  +       L+ EG         
Sbjct: 368 LLYATCSSLPTENTEVIDAFLARTPGARELDLATEAGLRQPHGRQLLAQEG--------- 418

Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
                   G DGF+   L ++ 
Sbjct: 419 --------GHDGFYYAKLIKIA 432


>gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 546

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 120/479 (25%), Positives = 190/479 (39%), Gaps = 62/479 (12%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------LSQRDQILVRAIV 53
           R V++  L    + +  +  LL+ +  DS                  L  RD  LV  IV
Sbjct: 81  RAVAAVRLLRADKGKAFVD-LLNEKANDSGENEMGYVERTLGFSTRHLDDRDIRLVTVIV 139

Query: 54  NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
             T+R+   ID ++  +          +  L Q+LR+   +IL L+V  YAVVD  V  A
Sbjct: 140 AGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILKLNVPAYAVVDENVRLA 199

Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157
           K          +VN+ILR+              +  +     + ++ I   P W   R  
Sbjct: 200 KVALRP-GAGNMVNAILRKLLLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 258

Query: 158 NFYGKERVLAISDACISPLYIDLTVKFD----------IETWAHKLNAVMLPTGGIRLKE 207
            F GKE  L + +   S  Y  L V                         +    +R++E
Sbjct: 259 RFLGKEEALKLMNWNNSDPYFSLRVNTTNGYTRDDLVTRLEDLQVHYEKSIMDEFVRIRE 318

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GA 264
             ++++      EG+  VQD SA   V +       +++D CAAPGGKT  +        
Sbjct: 319 GMQAVLQAGLLKEGMCAVQDESAGFVVSVVDPQPGETIMDCCAAPGGKTLFMASRLAGQG 378

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPK--KLFDAVLVDAPCSSTGT 321
           KV+ALD++K RL  L       +L         D   Y  +    +D VL+DAPCS  G 
Sbjct: 379 KVSALDINKGRLRILMEAAKCHNLDDIITDIHGDLRLYAKESTTKYDKVLLDAPCSGLGV 438

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + +  D+ W R  +D+ +  C Q +LL      VKPGG++++S CS+D +++E  V   +
Sbjct: 439 LSKRADLRWNRQLEDLEELVCLQDELLDSASLLVKPGGVLIYSTCSIDHEENENRVTDFV 498

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  P                  A  ++ +G+                 +DG FA  L R
Sbjct: 499 QRHPEF------TLQGVHGYVPAEFITGDGFY--------SSSPTKHSLDGAFAARLVR 543


>gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215]
 gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215]
          Length = 438

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 177/414 (42%), Gaps = 33/414 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G   R  +  +L  V          L+    +  F  L   D   +  +    +R+ 
Sbjct: 1   MSIGYLQRKAAWEILLKV-SSGDFSDHALEKVLKNYQFNSL---DIAFITELSFGCIRYR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D   D     +  ++   L+ LL + + Q+L +D +   A +   VE AK+   N  
Sbjct: 57  KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLN-G 115

Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN+ILR  SR+  + +           I+ +   P W  + L  + G      I  
Sbjct: 116 LAGTVNAILRNASRKLEQKIFPELSSDKKERISYLESFPLWLVKDLYKWVGNSEGENIIK 175

Query: 171 ACISPLYIDLTVKFDIETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAE 220
           A      IDL +          L            +     GI LK  P SI +LPG+++
Sbjct: 176 AFNKKPSIDLRINQLKTNLDKFLIVLYENKIDAEIIKDLHNGITLKSNPRSIKNLPGYSD 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277
           G+W +QD S+     L        +LD CAAPG K+  L         + A+D S++RL+
Sbjct: 236 GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEILAVDRSEKRLK 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            L+ NL RL+L + + ++ DA      +      FD +L+DAPCS  GT+ R+PD  W+ 
Sbjct: 296 ILQSNLVRLNLKSVNTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSL 355

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             + I      Q KLL +    +K  GI+V+S C++   ++  +++K +  +  
Sbjct: 356 SKEKIKSLTLLQEKLLEKIFPLLKKDGIMVYSTCTICPDENNLLIEKFIEKNKG 409


>gi|254429168|ref|ZP_05042875.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp.
           DG881]
 gi|196195337|gb|EDX90296.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp.
           DG881]
          Length = 427

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 113/445 (25%), Positives = 189/445 (42%), Gaps = 42/445 (9%)

Query: 12  SHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
              L+ V+       SL  +L           L   D   +R I     R L  ++  L+
Sbjct: 1   MRALNRVLPGKGDGESLREVLRDF-------PLQGSDGGQMRDICFGVCRHLRPLNHWLN 53

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             L   L      ++  L   + ++ + D   +A+V+   +  ++  +    A L N++L
Sbjct: 54  QQLSKPLKASAQPVRLALLAGLYELWFSDRPAHAIVNAYPQLCRK-LKAPWAAGLSNAVL 112

Query: 129 RRVSREKIELLQRIAGISI---IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           R+ S+  +E     A  +I   +P+W  +R +  +  +   A++ A +      L V   
Sbjct: 113 RKASQITLEEAVADAPANIQLSLPDWLFKRWQKDWPDD-ADAMARANLQTPPFTLRVNRQ 171

Query: 186 IETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            +  A  L A                 +    +  LPGF +G   VQD +A +P +L   
Sbjct: 172 QQQRADALTALGEGARAGSVAPYSIYLQPARPVFQLPGFEQGALSVQDEAAQLPAELLQA 231

Query: 240 LNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--E 295
             N  +LD CAAPGGKT Q       A +TAL++  +RL ++R NL RL      +    
Sbjct: 232 PANGRILDACAAPGGKTGQLREKFPAADLTALELEGKRLARIRENLARLGTDVTLLQGDA 291

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D   +     FDA+L+DAPCS+TG +RR PDV W R   DI      Q ++L      +
Sbjct: 292 SDPHSWWDGTPFDAILLDAPCSATGILRRQPDVKWHRKASDIAALVDLQARMLDALWPLL 351

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
            PGG++V++ CS+ + +++  V+  L+  P   ++ P              +   GW ++
Sbjct: 352 NPGGMLVYATCSVLRDENDHQVRDFLQRQPQARDVTP--------RPEGATMVDAGW-QL 402

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P           G DGF+   LR+
Sbjct: 403 FP--------EQHGPDGFYLACLRK 419


>gi|240172782|ref|ZP_04751441.1| fmu protein (sun protein) [Mycobacterium kansasii ATCC 12478]
          Length = 464

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 101/461 (21%), Positives = 161/461 (34%), Gaps = 42/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V  +       L     +   R ++ RD      +   T R    +DA
Sbjct: 22  PARAAAFDALCAVTSRDAYANLALPALLRE---RGITGRDAAFATELTYGTCRTRGLLDA 78

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+      +       L  LLR+   Q+L   V  +A V   V+QA   + +   A  VN
Sbjct: 79  VIGAAAGRAPEAIDPVLLDLLRLGTYQLLRTRVGSHAAVSTTVDQAG-IEFDSARAGFVN 137

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVLAISD 170
            +LR ++                       A +   P W  +   +        + A+  
Sbjct: 138 GVLRTIAGRDERSWVDELAPDPRSDPIGHAAFVHAHPRWIAQAFADALGTAAAELEAVLA 197

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +     ++ L  +         A  +   +       +         L    +G   VQD
Sbjct: 198 SDDERPHVHLAARPGVLTAAELAAAVGGTVGRYSPYAVYLPGGDPARLAPVRDGQALVQD 257

Query: 228 ASASIPVQL----FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA--LDVSKRRLEKLRC 281
             + +  +         +    LDLCA PGGKTA L   G +  A    V          
Sbjct: 258 EGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTALLAGLGGQSGARVTAVEPSPQRAGMV 317

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
             +   L    +++ D         FD VLVD PC+  G +RR P+  W R   D+   A
Sbjct: 318 RANTAGLP-VAVVQADGRHSGLDPGFDRVLVDVPCTGLGALRRRPEARWRRQPADVPALA 376

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL   I+ V+PGG+V+++ CS    ++  V+   LR  P     V          
Sbjct: 377 KLQRELLAAAIALVRPGGVVLYATCSPHLAETVGVLADALRRHP-----VAALDTRPLFE 431

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            +   L    ++++ P           G D  FA AL+RL 
Sbjct: 432 PVTEGLGDGPYVQLWPH--------RHGTDAMFAGALQRLA 464


>gi|54298582|ref|YP_124951.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
 gi|53752367|emb|CAH13799.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
          Length = 427

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 201/458 (43%), Gaps = 52/458 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R  +  +L+ +M  R +L+ L+         + +S     + + I     R  
Sbjct: 1   MK--VNDRFNALKILTALMESRKNLSYLMS-------PQEISP----MTKEICYGFCRHY 47

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R+ ++ D ++          +  +L + + Q+ Y++  DYAVV   V    + K++   
Sbjct: 48  FRLQSIADTLINKRPK--DNEVWIVLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS-WA 104

Query: 121 AKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISPL 176
             LVN++LR   R +  +L+++A   +     P W  +RL+  +  +    I++A     
Sbjct: 105 KGLVNAVLRNFCRRQDHILEKLAAEPVFIYGQPNWLLQRLQKDWPNDW-QFIAEANDRHP 163

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227
            + L V      ++ +   L    +      +        +P  +++LPGFA+G   VQD
Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLD 284
           A+  +   L        VLD C APGGKT  ++   +      ALD+  +RL+++R NL+
Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283

Query: 285 RLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L A  +    ++   +     FD +L+DAPCS+TG IRRH D+   R  ++I   + 
Sbjct: 284 RLDLQATVVEGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQ 343

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      + PGG++V++ CS+   ++E  + + +   P                 
Sbjct: 344 VQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQISRFVAEHPD---------CQVSDGK 394

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +         +I P           GMDGFF   LR+
Sbjct: 395 WSWGRWTGHGQQILPG--------EHGMDGFFYSVLRK 424


>gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
 gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
          Length = 438

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/413 (25%), Positives = 180/413 (43%), Gaps = 33/413 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G   R  +  +L  V          L+    +  F  L   D   +  +    +R+ 
Sbjct: 1   MSIGYLQRKAAWEILLKV-SSGDFSDHALEKVLKNYQFNPL---DIAFITELSFGCIRYR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D   D     +  ++   L+ LL + + Q+L +D +   A +   VE AK+   N  
Sbjct: 57  KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLN-G 115

Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN+ILR  SR+  + +           I+ +   P W  + L  + G      I  
Sbjct: 116 LAGTVNAILRNASRKLEQKIFPELSSDRKERISYLESFPLWLVKDLYKWVGNSEGENIIK 175

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNA-------VMLPTGGIRLKELPESIVSLPGFAE 220
           A      IDL +     +++ +   L+        +     GI LK  P SI +LPG+++
Sbjct: 176 ALNKKPSIDLRINKLKTNLDNFLKVLHENKIDAEIIKDLHNGITLKSNPRSIKNLPGYSD 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277
           G+W +QD S+     L        +LD CAAPG K+  L         + A+D S +RL+
Sbjct: 236 GLWTIQDRSSQWIAPLLNPKQGEKILDACAAPGSKSTHLAELTNDSSEIIAVDRSAKRLK 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            L+ NL+RL+L + + ++ DA      +      FD +L+DAPCS  GT+ R+PD  W+ 
Sbjct: 296 ILQSNLERLNLKSVNTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSL 355

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
             + I      Q KLL      +K  G +V+S C++   ++  ++++ +  + 
Sbjct: 356 SKEKIKSLTLLQEKLLDSIFPLLKKDGTLVYSTCTICPDENNLLIERFIEKNK 408


>gi|256845813|ref|ZP_05551271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_36A2]
 gi|256719372|gb|EEU32927.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           3_1_36A2]
          Length = 435

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 200/452 (44%), Gaps = 37/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN + V+ +L+S V  K       L+  +       ++ +++  +  I    +R    +D
Sbjct: 1   MNIKQVAINLISQVD-KGAYSNIALNETFK---TLNINSKEKAFITEIFYGVIRNKKFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ QI ++D  +  +V  A E AK+       +K +
Sbjct: 57  YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDNKGIVWEATELAKKKYG-VPISKFI 112

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K       +  +    +  IP+WF + LE  YG   +     +     Y+
Sbjct: 113 NGTLRNYLRNKDLELKRLDDEKNYEVLYSIPKWFYDTLEKQYGNNNLKQAITSLKKIPYL 172

Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            + V        + E +  + +  ++             I++   F  G    QDAS+ +
Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIINSEEFKTGKIIAQDASSYL 232

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +  GT+ N  VLD+CAAPGGKTA   + + +  ++ A+D+ + +++ +  N+ +L + 
Sbjct: 233 AAKNLGTMPNELVLDICAAPGGKTAVLAENMENIGEIIAIDIHQHKIKLIDTNMKKLGID 292

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I MD        + FD +LVD PCS  G IR+ P++L++++ + + + A  Q ++L
Sbjct: 293 IVKAIIMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRESVEELAKLQLEIL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++S C++  +++   ++K L           +   Y     +    +
Sbjct: 353 NSAADILKDGGELIYSTCTIIDEENTNNIKKFLEERKEF----KVEKLYIPENVLGDYDN 408

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G+          I+     MD F+ + L++
Sbjct: 409 LGGF---------CINYKEEIMDNFYIIKLKK 431


>gi|325283419|ref|YP_004255960.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP]
 gi|324315228|gb|ADY26343.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP]
          Length = 418

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 173/440 (39%), Gaps = 29/440 (6%)

Query: 2   KSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           KS +N  R ++  +L  V+         LD          L  RD  L   IV  TLR  
Sbjct: 6   KSTLNPGRALAVRVLHRVLSGDSYAAPALDASLAS---AGLPARDAGLATHIVYGTLRRA 62

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P +   L+ +L     +       LL     + LYL   ++AVV+  V  A+  +     
Sbjct: 63  PALRLALNPLLRG---KTAPKAWALLLAGAFEKLYLGTPEHAVVNEYVSLARESRFAP-- 117

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN++LRRV   + +          +P W  E L   YG++    +            
Sbjct: 118 PGLVNAVLRRVQAPQEDTP---EARYALPAWLAEELGRVYGEQAADVMESLLEPQPLWLH 174

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
             +   +    + + +     GI    L   +     + +G     + +++  V   G +
Sbjct: 175 LGQQGPDLLESEGSLIERTVAGIDAVTLDRPLRQTAAYRQGQAQPVNPASAAVVTALGEV 234

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               V DL    G K A L ++GA VT++++   +    R NL RLH  A  I   D   
Sbjct: 235 RGQKVYDLAGGAGIKAALLALAGADVTSVELQPHKHAAARSNLKRLHARARLI-THDLTR 293

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                    VL+DAPC+ +GT+R HP++        + + A  Q +LL    + V+ GG+
Sbjct: 294 PLDAAPASLVLLDAPCTGSGTLRAHPEIKARLTPQAVGEMAELQAQLLDNAAALVEAGGL 353

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S CS+  Q+  + VQ  L S P                D +    P+  +   P  +
Sbjct: 354 LVYSVCSVFPQEGPQRVQAFLASHP----------------DFSAEPLPDLGVPTLPAEV 397

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   G+DGF+   LRR
Sbjct: 398 GVFTVPLDGLDGFYMARLRR 417


>gi|226306504|ref|YP_002766464.1| rRNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185621|dbj|BAH33725.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 482

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 104/456 (22%), Positives = 168/456 (36%), Gaps = 39/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             RL +  +L  V  +      +L     D   R L  RD  L   +     R    +DA
Sbjct: 42  QPRLAARDVLRAVRERDAYANLVLPGLLRD---RKLDARDAALATELAYGAARAQGLLDA 98

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       +     +L  +LR+   Q+L   VA +A V  +V+  + +   +  A  VN
Sbjct: 99  VIAHAAGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVATSVDLVRAENG-QGRAGFVN 157

Query: 126 SILRRVSREKIELLQ----------RIAGISIIPEWFKERLENFYGKE--RVLAISDACI 173
           ++LRRVS    +             R+A     P W  +   +  G     +  +  A  
Sbjct: 158 AVLRRVSERTQDEWVELLAPKDPVGRLAFEHAHPLWIAQVFADSLGAAAGELEDVLIADD 217

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           +   + L  +      E  A      + P     +         L    +G+  VQD  +
Sbjct: 218 ARPAVHLVARPGEISAEELALVTGGEIGPYSPYAVHLDGGDPGQLEAVRQGLAGVQDEGS 277

Query: 231 SIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284
            +  +           +   LDLCA PGGK A L   +G +   LD  +    +      
Sbjct: 278 QLVARALSIAPLEGEDSGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVEHRAELIRK 337

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  D+   D  +   +  +D +LVDAPC+  G +RR P+  W R   D+      Q
Sbjct: 338 TTRELPVDVHVADGRESGLEPGYDRILVDAPCTGLGALRRRPEARWRRQPSDVAPLVKLQ 397

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL   I  V+PGG+V++S CS    ++  VV   +R     V  +          D+ 
Sbjct: 398 RELLAAAIELVRPGGVVLYSTCSPHLSETLAVVADAVRRHG--VVELDTKELVPGVPDVG 455

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              S    +++ P           G D  F  ALR+
Sbjct: 456 DGSS----VQLWPH--------RHGTDAMFMAALRK 479


>gi|229493567|ref|ZP_04387352.1| Fmu protein [Rhodococcus erythropolis SK121]
 gi|229319528|gb|EEN85364.1| Fmu protein [Rhodococcus erythropolis SK121]
          Length = 482

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 168/456 (36%), Gaps = 39/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             RL +  +L  V  +      +L     D   R L  RD  L   +     R    +DA
Sbjct: 42  QPRLAARDVLRAVRERDAYANLVLPGLLRD---RKLDARDAALATELAYGAARAQGLLDA 98

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       +     +L  +LR+   Q+L   VA +A V  +V+  + +   +  A  VN
Sbjct: 99  VIAHAAGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVATSVDLVRAENG-QGRAGFVN 157

Query: 126 SILRRVSREKIELLQ----------RIAGISIIPEWFKERLENFYGKE--RVLAISDACI 173
           ++LRRVS    E             R+A     P W  +   +  G     +  +  A  
Sbjct: 158 AVLRRVSERTQEEWVELLAPKDPVGRLAFEHAHPLWIAQVFADSLGAAAGELEDVLIADD 217

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           +   + L  +      E  A      + P     +         L    +G+  VQD  +
Sbjct: 218 ARPAVHLVARPGEISAEELALVTGGEIGPYSPYAVHLDGGDPGQLEAVRQGLAGVQDEGS 277

Query: 231 SIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284
            +  +           +   LDLCA PGGK A L   +G +   LD  +    +      
Sbjct: 278 QLVARALSIAPLEGEDSGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVEHRAELIRK 337

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  D+   D  +   +  +D +LVDAPC+  G +RR P+  W R   D+      Q
Sbjct: 338 TTRELPVDVHVADGRESGLEPGYDRILVDAPCTGLGALRRRPEARWRRQPSDVAPLVKLQ 397

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL   I  V+PGG+V++S CS    ++  VV   +R     V  +          D+ 
Sbjct: 398 RELLAAAIELVRPGGVVLYSTCSPHLSETLAVVADAVRRHG--VVELDTKELVPGVPDVG 455

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              S    +++ P           G D  F  ALR+
Sbjct: 456 DGSS----VQLWPH--------RHGTDAMFMAALRK 479


>gi|262376795|ref|ZP_06070022.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           lwoffii SH145]
 gi|262308140|gb|EEY89276.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
           lwoffii SH145]
          Length = 435

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 194/455 (42%), Gaps = 41/455 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
              +N R      L  V +   SL  +L+         ++S+RD+ L   +    LR   
Sbjct: 8   AKNLNLRAQVVKTLLAV-QNGQSLASVLNQHI-----NIVSERDRGLYHELTLGCLRQWH 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + A+   +L   L     +L+  L + + QIL   +  +A +   V  AK+       +
Sbjct: 62  GLKAITLPLLTKPLD--NQALESCLYLGLYQILCTRIPAHAAISETVTAAKQ-LGFEPLS 118

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LRRVSRE  E    +     +P W  +RL+  +  E++  +S        + L 
Sbjct: 119 GLVNAVLRRVSRETEEFDLALNQAHGLPSWLYKRLKKDWP-EQLAELSHDLKQIAPLTLR 177

Query: 182 VKFD---IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           V  +    + +   L           L E          I +LPG+  G + VQD  A +
Sbjct: 178 VNINQVSRDEYLEILEEEGYEARACTLSEVGIVLEQNVHIPNLPGYEAGGFSVQDEHAQL 237

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY- 289
              L   L    V+D CAAPGGKTA      S  K+ A+D   +RL ++  NL+RL L  
Sbjct: 238 CATLVPDLEGKIVVDACAAPGGKTAHILEKYSPKKLYAIDQDAKRLVRVAENLERLLLTE 297

Query: 290 --AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
               +II  DA  +   +  D +++DAPCS+ G IRRHPD+   R + DI ++   Q+++
Sbjct: 298 YADVEIIAADAITWTAPEPVDCIVLDAPCSAIGVIRRHPDIRLLRHSTDIPQTVQLQKQI 357

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K GG +++  CS+ K ++E+ + +         E+          I+    +
Sbjct: 358 LENMWQQLKVGGTLLYITCSILKAENEQQMVEFFAQHADAKEIK---------IEADWGI 408

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 ++ P         +   DGFF   + +  
Sbjct: 409 EQIHGRQLLP--------KADQGDGFFYCRIEKTA 435


>gi|157149881|ref|YP_001449914.1| sun protein [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074675|gb|ABV09358.1| sun protein [Streptococcus gordonii str. Challis substr. CH1]
          Length = 437

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 186/457 (40%), Gaps = 37/457 (8%)

Query: 1   MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M++    AR V+  +L  V  +       L+          LSQ+D+ LV  +V  T+  
Sbjct: 1   METRRKSARQVALEVLEEVFDQGAFSNIALNKALKKVQ---LSQQDKSLVTELVYGTVAR 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              ++  L  ++        +    LL      +    + ++A++  AVE AK+ K    
Sbjct: 58  KLTLEWYLSHLIEDRDKLDSWLYILLLLSLYQMLYLDKIPNHALIHEAVELAKKRKLGSD 117

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN+ILRR+ RE            +R +     P W  + L   YG+ER  AI  + 
Sbjct: 118 --KFVNAILRRIEREGVADVETIKRKNKRYSIQYSTPVWLVKALIEEYGEERAQAILASL 175

Query: 173 ISP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
                  I +T     E     L A         L +          F  G+  +QD S+
Sbjct: 176 FERNKASIRVTDLARKEELKGLLQAEDSLLAPSALVKNQGHFAGHELFTSGLITIQDESS 235

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL 288
            +         +  +LD C+APGGKT  +       K+ ALD+   +L+ +     RL L
Sbjct: 236 QLVAPTLSIEGDERILDACSAPGGKTLHMASYLSTGKIIALDLYDHKLQLIEEAATRLGL 295

Query: 289 -YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D    +    K +FD +LVDAPCS  G +RR PD+ + ++  D +     Q
Sbjct: 296 ADKVQTKKLDAREVYQKFGKDVFDKILVDAPCSGIGLLRRKPDIKYNKENADFLSLQKIQ 355

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  Q++ +VV K L   P        N          
Sbjct: 356 LEILDSVCKSLRKGGIITYSTCTIFSQENSQVVSKFLERHP--------NFEQVNLKHER 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    RR+
Sbjct: 408 KDILKDGCILITPELY--------GSDGFFISQFRRI 436


>gi|326571735|gb|EGE21748.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis BC8]
 gi|326574350|gb|EGE24293.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis CO72]
          Length = 448

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 103/471 (21%), Positives = 200/471 (42%), Gaps = 51/471 (10%)

Query: 1   MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           MK+ +         +R     ++  ++    SL+ LLD     +         +  V  +
Sbjct: 1   MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLESTEMSS-----RGFVHEL 54

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
           +  TLR    +  + + ++ + +      +Q  + + + Q++Y+++ +YA ++  VE A 
Sbjct: 55  LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111

Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161
           +     +   LVN+ILR+  + K +  +++     +P W  ++L+  +            
Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGSTLR 171

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
               + +         +      D     H L ++          +    I  LP F EG
Sbjct: 172 FAAPIFLRVNTKFSDNVSYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231

Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274
              VQDA A +   L         ++ SVLD+C APGGKT     +     +TA+D ++ 
Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDGNRI 291

Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           RL+++  N+ RL L      ++  D   +   + FD +L+DAPC++TG +RRHPD+   R
Sbjct: 292 RLKRVHENISRLKLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              DI  +   QR +L    S +K GG++++  CS+ K ++E  +   LR++        
Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +A    + +   +  +   +  P   +       G DGF+   L +  +
Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448


>gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10]
 gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10]
          Length = 431

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 201/458 (43%), Gaps = 45/458 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N RL++  LL    +++      +  E  DS    L  +D+   + +V   +R  
Sbjct: 1   MKT--NVRLLAYRLLRKYEKEK-----FILREDVDSVLSFLDDKDRRFFKELVWGVVRKE 53

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  ++ +L         +++  LR+   Q+L+++ V DYA V   V+  K      +
Sbjct: 54  ELLDWYINQLLKK--KDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKS----EN 107

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           F KLVN++LRR+          +  I   PEW      +F  +E VL I      PL + 
Sbjct: 108 FKKLVNAVLRRLRTVPEPKELHL--IYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVM 165

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDA 228
           L V   + T   ++  ++   G   +                         +G+  VQ  
Sbjct: 166 LRVN-SLATTKEEVIKILAEEGTEAVPGKHAPFSLVVRKLGISMNDSRVIKDGLASVQGE 224

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +          L VLD CAAPGGKT    +L+    K+ A+D+S+ + + +  +  R
Sbjct: 225 SSQLVPFFMELKPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKTQLVEKHAKR 284

Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L + +    D        +  FD +LVDAPC+S GT R HP+VL   + +D  K +  
Sbjct: 285 LKLSSIETKIADVERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKFSEI 344

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +++ Q    ++ GGI+++S C++ K+++ EVV++ +       E++ +     K  ++
Sbjct: 345 QLRMVQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DAEVIDIRDKM-KEFEV 402

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  G++ + PD              F+   LR++
Sbjct: 403 EGIWDGYGFL-MLPDETITP---------FYISVLRKM 430


>gi|291003629|ref|ZP_06561602.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 473

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 158/459 (34%), Gaps = 43/459 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V  +       L         R +S RD  L   +     R    +DA
Sbjct: 32  PARSAALETLRAVRDRDAYANLALPALLK---QRRISGRDAALATELTYGACRAQGLLDA 88

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L      L   LR+   Q+L   +  +A V   V+  + +  +R  A   N
Sbjct: 89  VIGECSARPLDGIDPELLDALRLGAYQLLRTRIPAHAAVASTVDIVRAESGSRQ-AGFAN 147

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           ++LRR+S    +                 +A     P W  +   +  G       +   
Sbjct: 148 AVLRRISERDEQEWIDRLAPARDDDPVGHLALRYAHPRWIAQSFADALGSVGAELEAALA 207

Query: 173 ISPLYIDLTVKFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
                  + +       + +        +       G+ L         L    EG   V
Sbjct: 208 ADDARPAVHLTARPGEISAEELAAITGGDEAPYSPYGVHLDSGAGDPGDLEPVREGFASV 267

Query: 226 QDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLR 280
           QD  +        ++     +L  LDLCA PGGK   L          LD  ++   +  
Sbjct: 268 QDEGSQLVAVALSRVEVQGPDLRWLDLCAGPGGKANLLGSLVTMDGGTLDAVEQAPHRAD 327

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
                    + ++   D  D   +  +D VLVDAPC+  G +RR P+  W R  DD+ + 
Sbjct: 328 LVRRSTDGLSVEVHVADGRDPGLEPGYDRVLVDAPCTGLGALRRRPEARWRRRPDDVAEL 387

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  QR+LLL  +   + GG+V +  CS    ++E VV  V+R     VE +     +   
Sbjct: 388 AKLQRELLLSAVRLTREGGVVAYVVCSPHLSETEGVVSDVVRR--AGVEQLDARPYFPGV 445

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            D+    +    +++ P           G D  F   LR
Sbjct: 446 PDLGDGPA----VQLWPH--------RHGTDAMFCALLR 472


>gi|293192811|ref|ZP_06609706.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           odontolyticus F0309]
 gi|292820058|gb|EFF79056.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           odontolyticus F0309]
          Length = 490

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 173/475 (36%), Gaps = 45/475 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRIDA 65
            R ++  +L  V  +      +L      +      S RD      +V+ TLR + R+D 
Sbjct: 19  PRRIAYDVLHEVETQGAFANIILPKALRQARRDGHFSDRDAAFTSELVHGTLRAIGRLDW 78

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-------- 117
           V+   +   L         +LR+   Q+L + V D+A V   V+ A+    +        
Sbjct: 79  VISRHIDRPLADLDPRALVVLRMGTHQLLDMRVPDHAAVSATVDVAREHLTDGPVRFVNA 138

Query: 118 --RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISD 170
             R   +   S          +  Q +      P W      +      Y +E +L + +
Sbjct: 139 VLRSITREDPSEREAAMDAIADEDQALGVRYSHPAWMVTAFHDALKAHGYPEEELLDVLE 198

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLP---------TGGIRLKELPESIVSLPGFAEG 221
           A      + L  +  + +     +                   +         LP   +G
Sbjct: 199 ADNEVPTVTLVARPSLMSVDELADEAEDILDTRVALGAVSPYAVLLESGDPARLPSIRDG 258

Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVS 272
               QD  + +   +  +      N+   LDLCA P              GA+VTA +V 
Sbjct: 259 RAGAQDEGSQLAALIAASAPLEGDNDERWLDLCAGPGGKAALLAGLAAGVGARVTANEVH 318

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDY------CPKKLFDAVLVDAPCSSTGTIRRHP 326
             R   +          + +++  D   +       P   FD V+VDAPCS  G++RR P
Sbjct: 319 PHRARLVERTT--RQFDSIEVVSGDGRTFGGGQSAWPLGSFDRVVVDAPCSGMGSMRRRP 376

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +  W R   D+ +    QR+LL + ++  +PGG++ +  CS    ++ E V+++L++   
Sbjct: 377 ESRWNRTPADVEELTVLQRELLDRAVALTRPGGVLTYITCSPHAAETREQVERLLKA--G 434

Query: 387 PVELVPLNSAYWKSIDMAMA-LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            VEL+   +   +    A+   +  G I+       ++     G D  F   LRR
Sbjct: 435 EVELLDTVALANECAPQALDVPASAGVIKGFSGRTLQLWDHRFGTDLMFVACLRR 489


>gi|325672533|ref|ZP_08152229.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707]
 gi|325556410|gb|EGD26076.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707]
          Length = 495

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 97/459 (21%), Positives = 159/459 (34%), Gaps = 42/459 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R  +  +L  V  +      +L     +   R L  RD  L   +     R    +DA
Sbjct: 51  QPRRAARDVLRAVRERDAYANLVLPGLLRE---RRLDGRDAALATELAYGAARARGLLDA 107

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       +      L  +L +   Q+L   +A +A V  +V+  + +      A  VN
Sbjct: 108 VIAECAGRPVEEIDGPLLDVLELGAYQLLRTRIAPHAAVATSVDLVRAEAGP-GKAGFVN 166

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVL--AISD 170
           ++LRRVS +  +                 +A     P+W  +   +  G +      +  
Sbjct: 167 AVLRRVSEKTEDEWVARLAPDAVADPVGHLAFRYAHPKWIAQAFADSLGADAAELKDVLV 226

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           A  +   + L  +      E  A      + P     +         L    EG+  VQD
Sbjct: 227 ADDARPGVHLVARPGEISAEELALVTGGEVGPYSPYAVHLDGGDPGLLDAVREGLAGVQD 286

Query: 228 ASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRC 281
             + +  +               LDLCA PGGK A L    G     LD  +    +   
Sbjct: 287 EGSQLVARALTLAPLEGPDTGRWLDLCAGPGGKAALLGALVGIDGGRLDAVEPAEHRADL 346

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
                     D+   D  +      +D +LVDAPC+  G +RR P+  W R   D+    
Sbjct: 347 VRKTTRDLPVDVHVADGREPGLDGGYDRILVDAPCTGLGALRRRPEARWRRQPSDVSGLV 406

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL   +  V+PGG+V++S CS    ++  VV   +R        +          
Sbjct: 407 KLQRELLASALQLVRPGGVVLYSTCSPHVSETVAVVADAVRRHG--AVALDTRELVPGVP 464

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++         +++ P           G D  F  ALRR
Sbjct: 465 NLGDGP----GVQLWPH--------RHGTDAMFMAALRR 491


>gi|31792601|ref|NP_855094.1| Fmu protein (SUN protein) [Mycobacterium bovis AF2122/97]
 gi|121637337|ref|YP_977560.1| putative fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426744|ref|ZP_03424663.1| putative fmu protein [Mycobacterium tuberculosis T92]
 gi|219557310|ref|ZP_03536386.1| putative fmu protein [Mycobacterium tuberculosis T17]
 gi|224989812|ref|YP_002644499.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|260186346|ref|ZP_05763820.1| putative fmu protein [Mycobacterium tuberculosis CPHL_A]
 gi|260200462|ref|ZP_05767953.1| putative fmu protein [Mycobacterium tuberculosis T46]
 gi|260204672|ref|ZP_05772163.1| putative fmu protein [Mycobacterium tuberculosis K85]
 gi|289442852|ref|ZP_06432596.1| SUN protein [Mycobacterium tuberculosis T46]
 gi|289447003|ref|ZP_06436747.1| SUN protein [Mycobacterium tuberculosis CPHL_A]
 gi|289569424|ref|ZP_06449651.1| SUN protein [Mycobacterium tuberculosis T17]
 gi|289574076|ref|ZP_06454303.1| SUN protein [Mycobacterium tuberculosis K85]
 gi|289749965|ref|ZP_06509343.1| SUN protein [Mycobacterium tuberculosis T92]
 gi|31618190|emb|CAD94303.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium bovis AF2122/97]
 gi|121492984|emb|CAL71455.1| Probable fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772925|dbj|BAH25731.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289415771|gb|EFD13011.1| SUN protein [Mycobacterium tuberculosis T46]
 gi|289419961|gb|EFD17162.1| SUN protein [Mycobacterium tuberculosis CPHL_A]
 gi|289538507|gb|EFD43085.1| SUN protein [Mycobacterium tuberculosis K85]
 gi|289543178|gb|EFD46826.1| SUN protein [Mycobacterium tuberculosis T17]
 gi|289690552|gb|EFD57981.1| SUN protein [Mycobacterium tuberculosis T92]
          Length = 457

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 109/463 (23%), Positives = 167/463 (36%), Gaps = 46/463 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V  +      +L       A R +  RD      +   T R    +DA
Sbjct: 15  PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 71

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+      S       L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN
Sbjct: 72  VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170
            +LR ++                       A +   P W  +   +  G     + A+  
Sbjct: 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190

Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +  + T       +   +       +         L    +G   VQD
Sbjct: 191 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250

Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279
             + +  +              LDLCA PGGKTA L        A+VTA++ S  R + +
Sbjct: 251 EGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 310

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             N     L   +++ +D         FD VLVDAPC+  G +RR P+  W R   D+  
Sbjct: 311 AQNTR--GLP-VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR+LL   I+  +PGG+V+++ CS    ++   V   LR  P+             
Sbjct: 368 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHAL-----DTRPL 422

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +   L     +++ P           G D  FA ALRRL 
Sbjct: 423 FEPVLAGLGEGPHVQLWPH--------RHGTDAMFAAALRRLT 457


>gi|300173591|ref|YP_003772757.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887970|emb|CBL91938.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 453

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/459 (22%), Positives = 201/459 (43%), Gaps = 44/459 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R+++   L+ + +        L+          LS+ D+ L+  +V   ++     + 
Sbjct: 10  NPRVLAVQTLAKI-KNGAYSNLQLNQVIK---QHQLSEADKRLLTTLVYGVIQHRMTFEY 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +    +++LL  ++ Q+ +LD + ++A+ + ++E AK    +    K V
Sbjct: 66  WLAPFV--GDKKIDAWVRELLYSAIFQMKFLDKIPEHAIFNESIEVAK-ILGHVGTGKYV 122

Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +IL  + R+         E +QR++    +P W  E L +  G+E   A+ +       
Sbjct: 123 TAILHNIGRQGLRNISEIKEPIQRLSIERSLPIWLIETLISQNGEEATRAMLETINDAPK 182

Query: 178 IDLTVKFDIET--------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V   + +         A K   V               + S   F +G+  +QD S
Sbjct: 183 QSIRVNTTLASDEEVEQALAAEKFTTVKSRVAAHAYIVSGGHVASSKAFHDGLLTLQDES 242

Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285
           A +PV+      N+  + D  AAPGGKT Q+         +TALD+ + +++ ++ N +R
Sbjct: 243 AMLPVESMRLTENVKTILDAAAAPGGKTTQIAQSVGENVTITALDIHEHKIKLIQSNAER 302

Query: 286 LHLY-AEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           LH+        +DA     +  + FD +LVDAPCS  G +RR P++ + +   D+   A 
Sbjct: 303 LHVTEKIRTRVLDARKVPTEIEQKFDRILVDAPCSGFGLLRRKPEIRYDKTLTDVENLAH 362

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      V   G++V+S C++ +Q++++V+ K L       ELVP  ++     +
Sbjct: 363 LQFEILDSVSQNVTDNGMIVYSTCTILRQENDDVITKFLLKH-SDFELVPTQTSKNLKPN 421

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  +     + + P+  +         DGFF   L++ 
Sbjct: 422 RSEDV-----LHVYPNDYQ--------TDGFFVATLQKK 447


>gi|329894840|ref|ZP_08270640.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium IMCC3088]
 gi|328922734|gb|EGG30068.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium IMCC3088]
          Length = 425

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 106/452 (23%), Positives = 192/452 (42%), Gaps = 40/452 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + ARL +   +S V+                   + L  + +     +   T+  L
Sbjct: 1   MNPSI-ARLSAVRAVSQVLTGHA--------IRVSDFDQGLDPQQKAFAHQLAQGTINAL 51

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR+  +L+ +L   +  K+  +  +L   + QI Y+   D+A V+ +V  AK+ K+    
Sbjct: 52  PRLSGLLNQLLSKPIKPKEAEVHAILLTGLYQIEYMRTPDHAAVNESVNLAKKLKKT-WA 110

Query: 121 AKLVNSILRRVSREKIELLQR--IAGISIIPEWFKERLENFYGKERVLAISDACISPL-Y 177
            KL+N  LRR  RE+  L      A  +   EW  + +   + +     I     +    
Sbjct: 111 IKLINGCLRRFLREQDTLRANLTTAAEAAHSEWMYQMVVAQWPERAAEIIDANNHAGPLC 170

Query: 178 IDLTVKFDIE-TWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           + +  +      +   L ++ +                  S+  LPGF +G   +QD +A
Sbjct: 171 LRVNPRHHSAGDYLQTLRSMDIDGTLSELAPECIRLHQACSVEKLPGFEKGWVSIQDEAA 230

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +  QLF       VLD C+APGGKT     +   A   A D++  RL K+R + +RL L
Sbjct: 231 QVAAQLFAIEPKQKVLDACSAPGGKTCHLAELYPDAYFVARDINSERLLKVRESAERLGL 290

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              DI E+       ++ FD +L D PCS +G +RRHPD+   R   D+ +    Q ++L
Sbjct: 291 -NIDIQELSQAQDNERECFDHILADVPCSGSGVVRRHPDIKTLRLASDLAQFHAQQLQIL 349

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +++  CS+ +Q++++ ++  L+             A  ++I+ +   +
Sbjct: 350 QNLWPKLKPGGTLLYVTCSIFEQENDQTIRLFLQQE---------TQASIQAINKSWGYA 400

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E   ++ P           G DG +   +++
Sbjct: 401 TEFGRQLIPQ--------RDGSDGLYFCRVQK 424


>gi|218671732|ref|ZP_03521401.1| RNA methyltransferase - sun protein [Rhizobium etli GR56]
          Length = 342

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 181/344 (52%), Positives = 235/344 (68%), Gaps = 4/344 (1%)

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156
           DV D++ VDL   +A +D  NR FAKLVN++LRR+ REK E+L  I  ++ +P WF  RL
Sbjct: 1   DVPDHSAVDLPSNRANQDPRNRRFAKLVNAVLRRLGREKDEVLAEIGKVAPMPSWFLARL 60

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
           E  YG++  LAIS + + P  IDLTVK D E WA KLN V LPTGG+RL      I SL 
Sbjct: 61  EKAYGRDTALAISQSQLEPAAIDLTVKSDAEGWAKKLNGVALPTGGVRLAAFDGGIPSLE 120

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
           GF EG WWVQDA+ASIP +LFG L+     DLCAAPGGKTAQLI++G  VTALD S+ RL
Sbjct: 121 GFDEGAWWVQDAAASIPARLFGDLSGKRAADLCAAPGGKTAQLILAGGAVTALDQSESRL 180

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            +LR NLDRL L AE +   D   + P + FDA+L+DAPCSSTGT RRHPDVLWT+  +D
Sbjct: 181 RRLRSNLDRLGLTAETV-AADLTTFKPPEGFDAILLDAPCSSTGTTRRHPDVLWTKGPED 239

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           I + A  Q +LL   ++ + PGG++VFSNCSLD  + EEVV +VL  +   +E VP+++ 
Sbjct: 240 IARLAALQERLLRHALTLLTPGGMLVFSNCSLDPAEGEEVVARVLSDT-GAIERVPISAG 298

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            W  ++ A  ++P G  R  P ML+  +G++SG+DGF+A  LRR
Sbjct: 299 DWPGLEAA--ITPLGEFRTLPTMLKMPEGIASGLDGFYAAVLRR 340


>gi|226355844|ref|YP_002785584.1| methyltransferase RsmB, Sun protein [Deinococcus deserti VCD115]
 gi|226317834|gb|ACO45830.1| putative methyltransferase RsmB, Sun protein [Deinococcus deserti
           VCD115]
          Length = 420

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 104/438 (23%), Positives = 179/438 (40%), Gaps = 32/438 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++  +L  V+         LD     +    L  RD  L   IV  TLR    +  
Sbjct: 14  PARELAVRVLLRVLHADTFAAPALDAALHSAR---LPARDSGLATHIVYGTLRHHLSLST 70

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            L  +L          ++ LL     + LYL    +AV    V  A+  +       LVN
Sbjct: 71  ALSPLLS---EDTHPKVRTLLLAGAFEKLYLGTPPHAVASEYVNLARGARLAP--PGLVN 125

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKF 184
           ++LRR++  + E     A  S +PEW ++  +  Y ++    ++D       ++ ++   
Sbjct: 126 AVLRRIALPQGE-----ADSSELPEWLRQVYQQAYAEQAPAVMADLLEPQPLWLSVSEAG 180

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                A          G  R++ L   +     + +G     + ++   V   G +  L 
Sbjct: 181 AAALEAEGSRLKGELQGTERVE-LARPLRESEAYRQGQAQPINPASLACVDALGDVEGLR 239

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           VLDL    G K A L   GA+VT++++  R+ +  R NL RL L AE +   D       
Sbjct: 240 VLDLAGGAGVKAAMLAARGAQVTSVELMARKHDAARANLSRLGLSAEFL-THDLTLPLDA 298

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
                VL+DAPC+ +GT+R HP++        +   A  Q ++L    + V+PGG +V+S
Sbjct: 299 PAAPRVLLDAPCTGSGTLRSHPEIKLRLTPQAVEAMADLQARMLPHAAALVEPGGTLVYS 358

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CS+  Q+  +VV + L + P         +     +++    +  G + +         
Sbjct: 359 VCSVTPQEGPQVVAEFLANHPDF------TADAVPGLEVPHVAAGPGVLTL--------- 403

Query: 425 GVSSGMDGFFAVALRRLI 442
               G+DGF+   L+R  
Sbjct: 404 -PLDGVDGFYIARLQRKA 420


>gi|15608545|ref|NP_215923.1| Fmu protein (SUN protein) [Mycobacterium tuberculosis H37Rv]
 gi|15840865|ref|NP_335902.1| sun protein [Mycobacterium tuberculosis CDC1551]
 gi|148661198|ref|YP_001282721.1| Fmu protein [Mycobacterium tuberculosis H37Ra]
 gi|148822627|ref|YP_001287381.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11]
 gi|167968446|ref|ZP_02550723.1| fmu protein (sun protein) [Mycobacterium tuberculosis H37Ra]
 gi|215411052|ref|ZP_03419860.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
 gi|215445594|ref|ZP_03432346.1| fmu protein (sun protein) [Mycobacterium tuberculosis T85]
 gi|218753116|ref|ZP_03531912.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
 gi|253799543|ref|YP_003032544.1| SUN protein [Mycobacterium tuberculosis KZN 1435]
 gi|254231649|ref|ZP_04924976.1| fmu protein (sun protein) [Mycobacterium tuberculosis C]
 gi|254364290|ref|ZP_04980336.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem]
 gi|254550421|ref|ZP_05140868.1| SUN protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289554802|ref|ZP_06444012.1| SUN protein [Mycobacterium tuberculosis KZN 605]
 gi|289757513|ref|ZP_06516891.1| fmu protein [Mycobacterium tuberculosis T85]
 gi|289761566|ref|ZP_06520944.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
 gi|294994969|ref|ZP_06800660.1| SUN protein [Mycobacterium tuberculosis 210]
 gi|297633963|ref|ZP_06951743.1| SUN protein [Mycobacterium tuberculosis KZN 4207]
 gi|297730952|ref|ZP_06960070.1| SUN protein [Mycobacterium tuberculosis KZN R506]
 gi|298524913|ref|ZP_07012322.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
 gi|306775590|ref|ZP_07413927.1| SUN protein [Mycobacterium tuberculosis SUMu001]
 gi|306780738|ref|ZP_07419075.1| SUN protein [Mycobacterium tuberculosis SUMu002]
 gi|306788507|ref|ZP_07426829.1| SUN protein [Mycobacterium tuberculosis SUMu004]
 gi|306792830|ref|ZP_07431132.1| SUN protein [Mycobacterium tuberculosis SUMu005]
 gi|306807307|ref|ZP_07443975.1| SUN protein [Mycobacterium tuberculosis SUMu007]
 gi|306967506|ref|ZP_07480167.1| SUN protein [Mycobacterium tuberculosis SUMu009]
 gi|306971698|ref|ZP_07484359.1| SUN protein [Mycobacterium tuberculosis SUMu010]
 gi|307079408|ref|ZP_07488578.1| SUN protein [Mycobacterium tuberculosis SUMu011]
 gi|307083976|ref|ZP_07493089.1| SUN protein [Mycobacterium tuberculosis SUMu012]
 gi|313658285|ref|ZP_07815165.1| SUN protein [Mycobacterium tuberculosis KZN V2475]
 gi|2829532|sp|P71675|Y1407_MYCTU RecName: Full=Putative methyltransferase Rv1407/MT1451
 gi|1542915|emb|CAB02186.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium tuberculosis
           H37Rv]
 gi|13881065|gb|AAK45716.1| sun protein [Mycobacterium tuberculosis CDC1551]
 gi|124600708|gb|EAY59718.1| fmu protein (sun protein) [Mycobacterium tuberculosis C]
 gi|134149804|gb|EBA41849.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem]
 gi|148505350|gb|ABQ73159.1| Fmu protein [Mycobacterium tuberculosis H37Ra]
 gi|148721154|gb|ABR05779.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11]
 gi|253321046|gb|ACT25649.1| SUN protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439434|gb|EFD21927.1| SUN protein [Mycobacterium tuberculosis KZN 605]
 gi|289709072|gb|EFD73088.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
 gi|289713077|gb|EFD77089.1| fmu protein [Mycobacterium tuberculosis T85]
 gi|298494707|gb|EFI30001.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
 gi|308215901|gb|EFO75300.1| SUN protein [Mycobacterium tuberculosis SUMu001]
 gi|308326397|gb|EFP15248.1| SUN protein [Mycobacterium tuberculosis SUMu002]
 gi|308334896|gb|EFP23747.1| SUN protein [Mycobacterium tuberculosis SUMu004]
 gi|308338705|gb|EFP27556.1| SUN protein [Mycobacterium tuberculosis SUMu005]
 gi|308346230|gb|EFP35081.1| SUN protein [Mycobacterium tuberculosis SUMu007]
 gi|308354824|gb|EFP43675.1| SUN protein [Mycobacterium tuberculosis SUMu009]
 gi|308358774|gb|EFP47625.1| SUN protein [Mycobacterium tuberculosis SUMu010]
 gi|308362711|gb|EFP51562.1| SUN protein [Mycobacterium tuberculosis SUMu011]
 gi|308366378|gb|EFP55229.1| SUN protein [Mycobacterium tuberculosis SUMu012]
 gi|323720071|gb|EGB29177.1| SUN protein [Mycobacterium tuberculosis CDC1551A]
 gi|326903028|gb|EGE49961.1| SUN protein [Mycobacterium tuberculosis W-148]
 gi|328459291|gb|AEB04714.1| SUN protein [Mycobacterium tuberculosis KZN 4207]
          Length = 457

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 109/463 (23%), Positives = 167/463 (36%), Gaps = 46/463 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V  +      +L       A R +  RD      +   T R    +DA
Sbjct: 15  PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 71

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+      S       L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN
Sbjct: 72  VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170
            +LR ++                       A +   P W  +   +  G     + A+  
Sbjct: 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190

Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +  + T       +   +       +         L    +G   VQD
Sbjct: 191 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250

Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279
             + +  +              LDLCA PGGKTA L        A+VTA++ S  R + +
Sbjct: 251 EGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 310

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             N     L   +++ +D         FD VLVDAPC+  G +RR P+  W R   D+  
Sbjct: 311 AQNTR--GLP-VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR+LL   I+  +PGG+V+++ CS    ++   V   LR  P+             
Sbjct: 368 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHAL-----DTRPL 422

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +   L     +++ P           G D  FA ALRRL 
Sbjct: 423 FEPVIAGLGEGPHVQLWPH--------RHGTDAMFAAALRRLT 457


>gi|326560689|gb|EGE11057.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 46P47B1]
          Length = 448

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/471 (21%), Positives = 199/471 (42%), Gaps = 51/471 (10%)

Query: 1   MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           MK+ +         +R     ++  ++    SL+ LLD     +         +  V  +
Sbjct: 1   MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLKSTEMSS-----RGFVHEL 54

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
           +  TLR    +  + + ++ + +      +Q  + + + Q++Y+++ +YA ++  VE A 
Sbjct: 55  LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111

Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161
           +     +   LVN+ILR+  + K +  +++     +P W  ++L+  +            
Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGRTLR 171

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
               + +         +      D     H L ++          +    I  LP F EG
Sbjct: 172 FAAPIFLRVNTKFSDNVSYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231

Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274
              VQDA A +   L         ++ SVLD+C APGGKT     +     +TA+D  + 
Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDSDRI 291

Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           RL+++  N+ RL L      ++  D   +   + FD +L+DAPC++TG +RRHPD+   R
Sbjct: 292 RLKRVHENISRLKLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              DI  +   QR +L    S +K GG++++  CS+ K ++E  +   LR++        
Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +A    + +   +  +   +  P   +       G DGF+   L +  +
Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448


>gi|288941789|ref|YP_003444029.1| sun protein [Allochromatium vinosum DSM 180]
 gi|288897161|gb|ADC62997.1| sun protein [Allochromatium vinosum DSM 180]
          Length = 449

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 187/444 (42%), Gaps = 42/444 (9%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           L  V+ +  SLT +L  +    A       DQ LV+ +V   LR LPR+  +   +L   
Sbjct: 27  LHAVLDRGQSLTRVLQADTTRRA-----PADQALVQEMVYGALRLLPRLRLIAGRLLERP 81

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
           L  +   LQ L+ V + Q+ ++    +A V   VE A R       A LVN++LRR  RE
Sbjct: 82  LKPRDGDLQALILVGLYQLGFMKTPSHAAVSATVE-ATRLLGKPRMAGLVNALLRRFQRE 140

Query: 135 KIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
              LL  +        + P+W  ERL   +  +   +I  A      + L V        
Sbjct: 141 HEALLAWVDTQPESRWLFPDWLLERLRADWPDDW-ESIVLASNERAPMALRVNPLQGTRA 199

Query: 188 TWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLN 241
               +L +  +    I   +    +        LPGF EG   VQD+ A +  +L     
Sbjct: 200 DTLAELESAGIGACAIDGLDTGVRLDQPRATRDLPGFIEGRVSVQDSGAQLAARLLDAQP 259

Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEM 296
              VLD CAAPGGK     +   +   + A+D    RL  +   LDRL L A+       
Sbjct: 260 GERVLDACAAPGGKTAAILERAGNALDLVAIDSDAARLATVGTTLDRLGLKAQVRVGDAA 319

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D       + FD +L+D PCS+TG IRRHPD+ W R  DDI   A  Q ++L      ++
Sbjct: 320 DPHGDWTARPFDRILLDVPCSATGVIRRHPDIKWLRRPDDIAALAATQSRILDAIWPLLR 379

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG ++++ CSL  +++E  V   L         + L + + +              ++ 
Sbjct: 380 PGGRLLYATCSLLAEENERQVDAFLARR-TDARALDLPTDWGRPRPPGR--------QLL 430

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P         + G DGFF   L +
Sbjct: 431 P--------TTQGHDGFFYALLAK 446


>gi|226366354|ref|YP_002784137.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226244844|dbj|BAH55192.1| putative rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 475

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/456 (21%), Positives = 161/456 (35%), Gaps = 39/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             RL +  +L  V  +      +L     +   R L  RD  L   +     R    +DA
Sbjct: 37  QPRLAARDVLRAVRERDAYANLVLPGLLRE---RRLDGRDAALATELAYGAARARGLLDA 93

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       +      L  +L++   Q+L   VA +A V  +V+  + +      A  VN
Sbjct: 94  VIADCAGRPIDEIDGPLLDVLQLGAYQLLRTRVAPHAAVATSVDLVRAEAGP-GKAGFVN 152

Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE--RVLAISDACI 173
           ++LRRVS                    A     P W  +   +  G +   +  +  A  
Sbjct: 153 AVLRRVSERSEAEWVERLAPADPVGRLAFEHAHPTWIAQVFADALGADAGELEDVLIADD 212

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           +   + L  +      E  A      +       +         L    EG+  VQD  +
Sbjct: 213 ARPAVHLVARPGEISSEELALATGGEVGRYSPYAVYLDGGDPGLLDAVREGLAGVQDEGS 272

Query: 231 SIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284
            +  +               LDLCA PGGK A L   +G +   LD  +    +      
Sbjct: 273 QLVARALSLAPLDGPDAGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVAHRADLIRK 332

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  D+   D  D   +  FD +LVDAPC+  G +RR P+  W R   D+   A  Q
Sbjct: 333 TTKELPVDVHVADGRDPGLEGGFDRILVDAPCTGLGALRRRPEARWRRQPSDVAGLAKLQ 392

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL      V+PGG+++++ CS    ++  VV   +R   +    +           + 
Sbjct: 393 RELLASAAGLVRPGGVILYATCSPHLSETVAVVADAVRRHGLTA--LDTRELVPGVPGLG 450

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              S    +++ P           G D  F  ALR+
Sbjct: 451 DGPS----VQLWPH--------RHGTDAMFMAALRK 474


>gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312]
 gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312]
          Length = 438

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 114/466 (24%), Positives = 192/466 (41%), Gaps = 60/466 (12%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G   R  +  +L  V          L+    +  F  L   D   +  +    +R+ 
Sbjct: 1   MSIGYLQRKAAWEILLKV-SHGDFSDHALEKVLRNYQFNPL---DIAFITELSFGCIRYR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D   D     +  ++   L+ LL + + Q+L +D +   A +   VE AK+   N  
Sbjct: 57  KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLN-G 115

Query: 120 FAKLVNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN+ILR  SR+  +           +RI+ +   P W  + L  + G      I  
Sbjct: 116 LAGTVNAILRNASRKLEQKILPELSSDRKERISYLESFPLWLLKDLYKWVGNSEGENIIK 175

Query: 171 ACISPLYIDLTVKFDIETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAE 220
           A      IDL +        + L            +     GI LK  P SI +LPG+++
Sbjct: 176 AFNKKPSIDLRINQLKTNLDNFLKVLHENNIDAEIIKDLHNGITLKSNPRSIKNLPGYSD 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277
           G+W +QD S+     L        +LD CAAPG K+  L         + A+D S +RL+
Sbjct: 236 GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEIIAVDRSAKRLK 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            L+ NL+RL+L + + ++ DA      +      FD +L+DAPCS  GT+ R+PD  W+ 
Sbjct: 296 ILQSNLERLNLKSVNTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSL 355

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             + I      Q KLL      +K  G +V+S C++   ++  ++++ +  +   ++LV 
Sbjct: 356 SKEKIKSLTLLQEKLLESIFPLLKKEGTLVYSTCTICPDENNLLIERFIEKNKT-LKLV- 413

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                             G  +I P +           DGF++  +
Sbjct: 414 ------------------GQKQILPSLDYP-------GDGFYSAII 434


>gi|241895667|ref|ZP_04782963.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871034|gb|EER74785.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 456

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 106/461 (22%), Positives = 189/461 (40%), Gaps = 45/461 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N R +S  +L  V +        LD          LS+++  L+  +V   ++    ++
Sbjct: 15  TNPRALSVRVLEKV-QNGAYSNLQLDSMIK---QADLSEKNVHLMTTMVYGVIQHRLTLE 70

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
             L   +     + +  +++LL +S+ Q+ YLD + D+A+ D A+  AKR + +    K 
Sbjct: 71  YWLIPFIKQP-QKLESWVRELLYISIFQMQYLDKIPDHAIFDEAINIAKR-RGHDGTRKF 128

Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           V  +L  + R+ +   + I       +  + +P W  E L    G  + ++I+    +  
Sbjct: 129 VTGVLHAIQRQGLPDFEDIKDETKRLSIKTSLPLWLIETLNGQLGWPKTVSIASTINAAP 188

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWWVQDA 228
              + V             L           +           +     F +G+  +QD 
Sbjct: 189 SQSVRVNRELISPTDLIKLLENDGYQVTPSEVTPDALLVSGGHVAGSQAFHDGLLTLQDE 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNL 283
           SA + V          VLD  AAPGGKT Q         G  V ALD+   + + ++ N 
Sbjct: 249 SAMLMVPSLDVHPGDKVLDAAAAPGGKTTQIATYLEKTQGGHVVALDIHDHKAKLIKENA 308

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            RL +    +   +DA     K     FD +LVDAPCS  G +RR P++ + +   D  +
Sbjct: 309 TRLQVADRIETQVLDARKVDEKFKDETFDRILVDAPCSGFGLLRRKPEIRYEKSLKDSYQ 368

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L    + +K GG +V+  C++   ++E+V+ + L +     +LVP      K
Sbjct: 369 LQKIQLSILDAVANKLKKGGRLVYGTCTILSTENEDVINEFLAAH-NDFKLVPT-----K 422

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +++    L  +G + + PD          G DGFF   L +
Sbjct: 423 TVNNLDVLDTQGMLHVYPDDF--------GSDGFFIATLVK 455


>gi|319785852|ref|YP_004145327.1| sun protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317464364|gb|ADV26096.1| sun protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 451

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 192/454 (42%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+  R+ ++ +L  V+ +  SL   L       A      RD+ L+ A+V   LR   
Sbjct: 21  APGVEVRVHAARVLDAVVNRGRSLKSELAPVLPRLA----DPRDRALLEAVVFAALRGRH 76

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R +A L   +         SL  LL    AQ+  L +  +A +D  VE A+      H A
Sbjct: 77  RYEAALRGWMAKPPGAGDGSLVALLLAGCAQLDALQLPAHAALDATVEAARALGRP-HQA 135

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDL 180
            LVN++LRR  RE        A       W + +LE  + +      + +  +   ++ +
Sbjct: 136 GLVNALLRRAQREGFPAADPAAAWP---RWLRMKLEAAWPEHAAAVFAASAHAAPLWLRV 192

Query: 181 TVK-FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIP 233
             +    + +  +L    +                P  + +LPGF +G+  VQD SA   
Sbjct: 193 NRRLVGRDEYRARLEEAGISASLDPRLPDGLRLDEPVPVAALPGFDQGLVAVQDGSAQQA 252

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAE 291
                      VLD CAAPGGK A LI      ++ ALDV  RRL ++   L R  L  E
Sbjct: 253 ADALAPEPGARVLDACAAPGGKAAHLIERDPTLELLALDVDPRRLARVEDTLRRGGLLGE 312

Query: 292 DII-----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +            +     FDA+L+DAPCS+TG +RR PD+L  R  +DI      Q +
Sbjct: 313 RVQLRPVDATAPALWWDGFTFDAILLDAPCSATGVVRRQPDILLHRRPEDIGSLVAAQAR 372

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++PGGI++++ CS+  +++   V+  L  +P  V +VPL  A+  +      
Sbjct: 373 LLDAVWPMLRPGGILLYATCSILPEENAGQVEAFLARTPDAV-VVPLPEAFGHAAGPG-- 429

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          +      GMDGFF   LR+
Sbjct: 430 --------------RQRLTGEDGMDGFFYARLRK 449


>gi|227524617|ref|ZP_03954666.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088292|gb|EEI23604.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
           ATCC 8290]
          Length = 444

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 188/463 (40%), Gaps = 42/463 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    N R ++   L             ++     +    +S  D+ L   IV   ++ 
Sbjct: 1   MKYQTNNPRELAVRTLLR-TSGGSYSNLQINAVIEST---SMSDVDKALFTNIVYGVIQH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN- 117
              ++  L   L  S  + +  +++LL  ++ Q+ YLD V   A+ D +++ AK    + 
Sbjct: 57  RMTLEYQLVPFLKDS-EKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDG 115

Query: 118 -----RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
                      ++    R   +  + +++I+    +PEW    +E   GK++   +  + 
Sbjct: 116 TRRFVTGILHQMDRKGVREPDKIKDPVKKISIKYSVPEWLVSLIEGQLGKQKADQVFKSL 175

Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWW 224
                  +              +L      T         +      +V    F  G+  
Sbjct: 176 NQTPKQSVRFNKAKTTKSKLTDQLTQAGFQTEDSLVAGEGIIVDKGQVVHSAFFENGLLT 235

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCN 282
           +QD SA +PV+      +  +LD C+APGGKT Q+   +   +V ALD+ + +L+ +  N
Sbjct: 236 IQDESAMLPVESMSIQPDDLILDACSAPGGKTTQIAANLKNGRVIALDIHQNKLKNVIRN 295

Query: 283 LDRLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             RL +      +        +    ++FD +LVDAPCS  G +RR P++ + +   DI 
Sbjct: 296 AKRLGVDGVVETQALDARKVDEKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADIN 355

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             +  Q ++L      VK GG + +S C++ +Q+++EV+++ L + P             
Sbjct: 356 HLSQIQLQILEAVAPKVKTGGTITYSTCTIVQQENQEVIKQFLDAHPDF-------QIEP 408

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              D+ +     G I I PD          G DGFF  +L R 
Sbjct: 409 TKTDLNLTTDENGMINIYPDDF--------GSDGFFVCSLVRK 443


>gi|269127209|ref|YP_003300579.1| Fmu (Sun) domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268312167|gb|ACY98541.1| Fmu (Sun) domain protein [Thermomonospora curvata DSM 43183]
          Length = 471

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 166/457 (36%), Gaps = 38/457 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  V  +      LL +   +   R L+ RD  L   +   TLR     DAV
Sbjct: 28  VRRTAFEVIRAVQTRDAYANLLLPVRLRE---RGLTGRDAALATELTYGTLRGRGTYDAV 84

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L+      L R    L  +LR+   Q+L   +  +A V  AVE A+        A   N+
Sbjct: 85  LEVCSDRPLRRIDEPLLDVLRLGAHQLLGTRIPPHAAVGTAVELARSVVG-AGRAGFANA 143

Query: 127 ILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF--YGKERVLAISDACI 173
           +LR+V+   ++    I           +     P W    L +     ++ + A+  A  
Sbjct: 144 VLRKVATRDLKAWLDIVAPPDDELGRLSVTYSHPRWIVSALRDALGPARDEIEALLAADN 203

Query: 174 SPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
               + L  K    T A   +  A                  ++   A G   VQD ++ 
Sbjct: 204 DRPRVTLVAKPGRATVAELVEAGAEPAAWSPQAAVLPEGDPAAIEAVAAGRAAVQDEASQ 263

Query: 232 IPV----QLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEKLRCNL 283
           +       +     +   LD+CA PGGK   L       GA++ A D+ + R   +R  +
Sbjct: 264 LVTLALAAVPLDGPDGRWLDMCAGPGGKAGLLSGLAGGRGARLLACDLQEHRAALVRQAV 323

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           D     A                FD VL+DAPC+  G +RR P+  W RD   + +    
Sbjct: 324 DDRTAVAVADGTA---PPWRPASFDRVLLDAPCTGLGALRRRPEARWRRDPSALAELGPL 380

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR LL   +  V+PGG+V +  CS    ++  VV  VLR  P    L         +   
Sbjct: 381 QRALLAAALEAVRPGGVVAYVTCSPHLAETRVVVDDVLRDRPDVQRLDAPAVLAETARGE 440

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              L    + +  P           G D  F   LRR
Sbjct: 441 LTGLGEGPYAQFWPH--------RHGTDAMFLALLRR 469


>gi|290961866|ref|YP_003493048.1| RNA-binding Sun protein [Streptomyces scabiei 87.22]
 gi|260651392|emb|CBG74514.1| putative RNA-binding Sun protein [Streptomyces scabiei 87.22]
          Length = 452

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 164/464 (35%), Gaps = 44/464 (9%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFR----LLSQRDQILVRAIVNVTLRFLPRIDA 65
           ++   L  V  +      +L      +  +        RD  L   +V  TLR     DA
Sbjct: 2   LAFEALRAVDERDAYANLVLPPLLRRARQKEGPEKFDARDAALATELVYGTLRRQGTYDA 61

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+   +   L      +  +L +   Q+L   +  +A V  +V+ A+    +   AK VN
Sbjct: 62  VIASCVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVDLARVVLGD-GRAKFVN 120

Query: 126 SILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAISD 170
           ++LR++++  ++                 +A +   P W    L +  G  R     + +
Sbjct: 121 AVLRKIAQHDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEDLLE 180

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWVQ 226
           A      + L  +    T    L       G      +         ++    EG   VQ
Sbjct: 181 ADNERPEVTLVARPGRATTEELLREEAAVAGRWSPYAVRLSEGGEPGAVDAVREGRAGVQ 240

Query: 227 DASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEK 278
           D  + +             + + LD CA PGGK A L       GA + A +    R   
Sbjct: 241 DEGSQLVALALANAPLEGPDKAWLDGCAGPGGKAALLAALAAERGAVLLASEKQPHRAGL 300

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +   L       + I             FD VL+D PC+  G +RR P+  W R  +D+ 
Sbjct: 301 VAKALHGNPGPYQVIAADGTRPPWRPGAFDRVLMDVPCTGLGALRRRPEARWRRRPEDLE 360

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             A  QR LL   +  V+ GG+V ++ CS    ++  VV  VL+S     +L+       
Sbjct: 361 GFAPLQRALLRTALDSVRVGGVVGYATCSPHLAETRAVVDDVLKSYGDAADLIDARPLLE 420

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +         I++ P +         G D  +   +RR+ 
Sbjct: 421 GVPALGEGPD----IQLWPHL--------HGTDAMYLALIRRVA 452


>gi|54025577|ref|YP_119819.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152]
 gi|54017085|dbj|BAD58455.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152]
          Length = 627

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/456 (21%), Positives = 157/456 (34%), Gaps = 39/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R V+  +L  V  +      +L     D   R +  RD  L   +     R    +DA
Sbjct: 188 PPREVALEVLRAVRERAAYANLVLPKLLRD---RRIDGRDAALATELAYGACRAQGLLDA 244

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       + +    L  +LR+ V Q+L   +  +A VD +V  A+ +      +  VN
Sbjct: 245 VIAACAGRPVAQIDGPLLDVLRLGVYQLLRTRIGAHAAVDTSVGLARAEFG-AGKSGFVN 303

Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVL--AISDACI 173
           ++LR+ +R   +               A     P W  +   +  G        +  A  
Sbjct: 304 AVLRQAARRTAQEWVEELAPADPIGKLAFEYAHPVWIAQAFADALGARATELPELLAADD 363

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           +   + L  +      E  A              +         L    EG+  VQD  +
Sbjct: 364 ARPTVHLVARPGEITAEELALVTGGEEGRWSPYAVYLEGGDPGGLEPVREGMAAVQDEGS 423

Query: 231 SIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLD 284
            +                  LDLCA PGGK A L          +D  +    +      
Sbjct: 424 QLVALSLTRAPLDGPDTGRWLDLCAGPGGKAALLGALAAIDGFEVDAVEPAEHRAELVRT 483

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                   +   D  D      +D +LVDAPC+  G +RR P+  W R  +D+      Q
Sbjct: 484 ATRELPVRVHVADGRDSGLSPGYDRILVDAPCTGLGALRRRPEARWRRGPEDLRDLVRLQ 543

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL      ++PGG+VV+S CS    ++  VV  ++R +    E +          D+ 
Sbjct: 544 RELLTAAWDLLRPGGVVVYSTCSPHLAETVSVVADLVRRT--DAEQLDTRDLLPGVSDVG 601

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +     ++ P           G D  F  ALR+
Sbjct: 602 DGPAA----QLWPH--------RHGTDAMFMAALRK 625


>gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 465

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/475 (21%), Positives = 180/475 (37%), Gaps = 62/475 (13%)

Query: 17  CVMRKRISLTCL----LDLEYGDSAF---------RLLSQRDQILVRAIVNVTLRFLPRI 63
            +         L     +    + A+           L  R++ LV   V   +R+   +
Sbjct: 2   RIEEGGAFADVLSGEGDNSWEDEMAYVGRTLGFRVPSLDLRERRLVTDEVAGIVRWKRYL 61

Query: 64  DAVLDFVLI---SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           D ++            R +  L+Q+LRV + +++ L++  +AV++  V+ AK        
Sbjct: 62  DFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIKLEMPPHAVLNETVQLAKVALR-AGA 120

Query: 121 AKLVNSILRRVSREKIE--------------LLQRIAGISIIPEWFKERLENFYGKERVL 166
             LVN +LR V R + +                + +A I   P W        +G++  +
Sbjct: 121 GNLVNGLLRDVVRHQDKGLLPVPAVEGDQRSRARALATIHSHPVWMVRLWFTQFGEDETV 180

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAV-----------MLPTGGIRLKELPESIVSL 215
            + +         L           +L A                  +RL    + ++  
Sbjct: 181 RLMECNNQRPKFSLRANSARGVSKQELIAELDKLEVSYSESPYLPDFVRLSAGMQDVLRS 240

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272
                G   VQD SA + V +       +++D CAAPGGK       +    KV A+DV+
Sbjct: 241 GLLQNGCIAVQDESAGLVVSVIDAHPGDTIIDCCAAPGGKALNLASRLNGQGKVVAVDVN 300

Query: 273 KRRLEKLRCNLDRLHLYAE---DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           + RL  L    ++  +         ++  +        D VL+DAPCS  G + +  D+ 
Sbjct: 301 EGRLRILSEAAEQQGVGDVVSPCHYDLRDYAAKAAGTADRVLLDAPCSGLGVLSKRADLR 360

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W R  +D+ +    Q  LL      VKPGG++V+S CS++  ++ E +   L  +   V 
Sbjct: 361 WRRSPEDVKQLTELQDSLLDAAALLVKPGGVLVYSTCSIETSENSERIAAFLSRNRDFV- 419

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                S   +    A  +S EG+    P           G+DG FA  +RR  +P
Sbjct: 420 -----SENVEPFVPASMVSKEGFFVSFPH--------RHGVDGAFAARMRRSFEP 461


>gi|54295430|ref|YP_127845.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
 gi|53755262|emb|CAH16756.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
          Length = 427

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 201/458 (43%), Gaps = 52/458 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R  +  +L+ ++  R +L+ L+         + +S     + + I     R  
Sbjct: 1   MK--VNDRFNALKILTALIESRKNLSYLMS-------PQEISP----MTKEICYGFCRHY 47

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R+ ++ D ++          +  +L + + Q+ Y++  DYAVV   V    + K++   
Sbjct: 48  FRLQSIADTLINKRPK--DNEVWIVLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS-WA 104

Query: 121 AKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISPL 176
             LVN++LR   R +  +L+++A   +     P W  +RL+  +  +    I++A     
Sbjct: 105 KGLVNAVLRNFCRRQDHILEKLAAEPVFIYGQPNWLLQRLQKNWPNDW-QFIAEANDRHP 163

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227
            + L V      ++ +   L    +      +        +P  +++LPGFA+G   VQD
Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLD 284
           A+  +   L        VLD C APGGKT  ++   +      ALD+  +RL+++R NL+
Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283

Query: 285 RLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L A  +    ++   +     FD +L+DAPCS+TG IRRH D+   R  ++I   + 
Sbjct: 284 RLDLQATVVEGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQ 343

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      + PGG++V++ CS+   ++E  + + +            +        
Sbjct: 344 VQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIARFVAEH---------SDCQVSDGK 394

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +         +I P           GMDGFF   LR+
Sbjct: 395 WSWGRWTGHGQQILPG--------EHGMDGFFYSVLRK 424


>gi|326561732|gb|EGE12067.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 7169]
 gi|326562326|gb|EGE12652.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 103P14B1]
 gi|326569046|gb|EGE19115.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis BC1]
 gi|326571810|gb|EGE21816.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis BC7]
 gi|326575530|gb|EGE25455.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 101P30B1]
          Length = 448

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 103/471 (21%), Positives = 199/471 (42%), Gaps = 51/471 (10%)

Query: 1   MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           MK+ +         +R     ++  ++    SL+ LLD     +         +  V  +
Sbjct: 1   MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLESTEMSS-----RGFVHEL 54

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
           +  TLR    +  + + ++ + +      +Q  + + + Q++Y+++ +YA ++  VE A 
Sbjct: 55  LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111

Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161
           +     +   LVN+ILR+  + K +  +++     +P W  ++L+  +            
Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGCTLR 171

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
               + +         +      D     H L ++          +    I  LP F EG
Sbjct: 172 FAAPIFLRVNTKFSDNVSYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231

Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274
              VQDA A +   L         ++ SVLD+C APGGKT     +     +TA+D  + 
Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDSDRI 291

Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           RL+++  N+ RL L      ++  D   +   + FD +L+DAPC++TG +RRHPD+   R
Sbjct: 292 RLKRVHENISRLKLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              DI  +   QR +L    S +K GG++++  CS+ K ++E  +   LR++        
Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +A    + +   +  +   +  P   +       G DGF+   L +  +
Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448


>gi|260432196|ref|ZP_05786167.1| Fmu [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416024|gb|EEX09283.1| Fmu [Silicibacter lacuscaerulensis ITI-1157]
          Length = 387

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 207/387 (53%), Gaps = 18/387 (4%)

Query: 1   MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +    AR  + +LL  ++ +      LL       A   L+  D+   + +   TLR 
Sbjct: 1   MTNTPTAARRSAIYLLDQILGEGR----LLSECLAAGALDRLAPEDRARAQRLTLETLRG 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L R D +L+  L  +      ++Q  LR+   ++   + A + VV+  VE   R +++  
Sbjct: 57  LERADRLLEGHLRRTP---ALTVQNALRLGTVELCQGE-AAHGVVNAMVEIVGRSRKHGR 112

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              LVN++LR+++ E  E   ++  +  +P+W +E L   +G E V  +  A  +   +D
Sbjct: 113 LKGLVNAVLRKIAAEGPEAWPKM-RVPRLPDWLREPLIAAWGAEAVKGMEQAHFAGAPLD 171

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           L      ++ A       LPTG +R+ +    + +LPG+A G WWVQDA+A++P ++   
Sbjct: 172 L----TPKSGATIPMGTELPTGSVRVTDA-GQVSALPGYAAGDWWVQDAAAALPGRILAA 226

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
                VLD+CAAPGGKT QL  +GA VTALD+S+ RL ++R NL+R  L A  ++  DA 
Sbjct: 227 RPGERVLDMCAAPGGKTLQLAAAGAVVTALDISEARLARVRENLERTGLSA-QVVAGDAL 285

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
           D+  +  +DA+L+DAPCS+TGTIRRHPD+ + +D  +       Q ++L    + +KPGG
Sbjct: 286 DH--QGQYDAILLDAPCSATGTIRRHPDLPFAKDGSEFGGLIALQARMLAHAWTLLKPGG 343

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +V+  CSL   + E  +++ L   P 
Sbjct: 344 RLVYCTCSLLPDEGEVQIEEALPQHPD 370


>gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
 gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
          Length = 438

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 104/413 (25%), Positives = 179/413 (43%), Gaps = 33/413 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G   R  +  +L  V          L+    +  F  L   D   +  +    +R+ 
Sbjct: 1   MSIGYLQRKAAWEILLKV-SSGDFSDHALEKVLKNYQFNPL---DIAFITELSFGCIRYR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D   D     +  ++   L+ LL + + Q+L +D +   A +   VE AK+   N  
Sbjct: 57  KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAITTTVEVAKKTDLN-G 115

Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN+ILR  SR+  + +           I+ +   P W  + L  + G      I  
Sbjct: 116 LAGTVNAILRNASRKLEQKIFPELSSDRKERISYLESFPLWLVKDLYKWVGNSEGENIIR 175

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAE 220
           A      IDL +     +++ +   L+   +    I        LK  P SI +LPG+++
Sbjct: 176 AFNKKPSIDLRINQLKTNLDNFLKVLHENKIDAEIINDLNNGITLKSNPRSIKNLPGYSD 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277
           G+W +QD S+     L        +LD CAAPG K+  L         + A+D S +RL+
Sbjct: 236 GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEIIAVDRSAKRLK 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTR 332
            L+ NL+RL+L + + ++ DA             FD +L+DAPCS  GT+ R+PD  W+ 
Sbjct: 296 ILQSNLERLNLKSVNTLKADATRLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSL 355

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
             + I      Q KLL   +  +K  G +V+S C++   ++  ++++ +  + 
Sbjct: 356 SKEKIKSLTLLQGKLLESILPLLKKDGTLVYSTCTICPDENNLLIERFIEKNK 408


>gi|262282216|ref|ZP_06059985.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           2_1_36FAA]
 gi|262262670|gb|EEY81367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
           2_1_36FAA]
          Length = 437

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 189/457 (41%), Gaps = 37/457 (8%)

Query: 1   MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M++    AR V+  +L  V  +       L+          LSQ+D+ LV  +V  T+  
Sbjct: 1   METRRKSARQVALEVLEEVFDQGAFSNIALNKALKKVQ---LSQQDKSLVTELVYGTVAR 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              ++  L  ++        +    LL      +    + ++A++  AVE AK+ K    
Sbjct: 58  KLTLEWYLSHLIEDRDKLDSWLYILLLLSLYQMLYLDKIPNHALIHEAVELAKKRKLGSD 117

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
             K VN+ILRR+ RE            +R +     P W  + L   YG+ER LAI  + 
Sbjct: 118 --KFVNAILRRIEREGVADVETIKRKNKRYSIQYSTPVWLVKALIEEYGEERALAILASL 175

Query: 173 ISP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
                  I +T     E     L A         L +          F  G+  +QD S+
Sbjct: 176 FERNKASIRVTDLARKEELKGLLQAEDSLLAPSALVKNQGHFAGHELFTSGLITIQDESS 235

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            +     G   +  +LD C+APGGKT  +   ++  ++ ALD+   +L+ +     RL L
Sbjct: 236 QLVAPTLGIEGDERILDACSAPGGKTLHMASYLNTGEIIALDLYDHKLQLIEEAATRLGL 295

Query: 289 -YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  ++D    +    K  FD +LVDAPCS  G +RR PD+ + ++  D +     Q
Sbjct: 296 ADKVQTKKLDAREVYQKFGKDTFDKILVDAPCSGIGLLRRKPDIKYNKENADFLSLQKIQ 355

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            ++L      ++ GGI+ +S C++  Q++ +VV K L   P        N          
Sbjct: 356 LEILDSVCQSLRKGGIITYSTCTIFSQENSQVVSKFLEKHP--------NFEQVNLKHER 407

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +G I ITP++         G DGFF    +R+
Sbjct: 408 KDILKDGCILITPELY--------GSDGFFISQFKRI 436


>gi|82701526|ref|YP_411092.1| sun protein [Nitrosospira multiformis ATCC 25196]
 gi|82409591|gb|ABB73700.1| sun protein [Nitrosospira multiformis ATCC 25196]
          Length = 442

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 202/464 (43%), Gaps = 58/464 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++  +  V+    SLT +L   +   +   LS + +  ++ +    LRF  ++D +L 
Sbjct: 6   RLAATTVERVV-SGASLTTVLQETWRSHS--GLSDQQRGAIQDLSYGVLRFYGQLDILLG 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD-------------K 115
            +L   L     SL+ LL V + Q+ Y   A + VVD AV  +                +
Sbjct: 63  LLLNKPLK--DQSLRYLLLVGLYQLQYSKTAPHVVVDSAVSASCSPSIDGRNSRNMLDPR 120

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYG-KERVLAISD 170
             +    LVN+ILR   R++  LL++ A         P+W+ ++L   Y  + + +  + 
Sbjct: 121 HAKSIGGLVNAILRNFLRKRPALLEKTAATEVGRYSHPQWWIDKLRAQYPSRYQAVLETA 180

Query: 171 ACISPLYIDLTVK-FDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEG 221
               P+ + +  +  ++E +   L+             T        P  +  LPGF +G
Sbjct: 181 NIRPPMALRVNQRRTNVEAYQKLLHNAGLNARRPENEWTEEALELFHPVPVEKLPGFGQG 240

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLR 280
           +  VQD +A +   L    + + VLD CAAPGGK+A L+        A+D    RLE+L+
Sbjct: 241 LVSVQDVAAQMAAPLLCPQSGMRVLDACAAPGGKSAHLLELTDLELTAVDNDGERLERLK 300

Query: 281 CNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            N  RL L    II  DA     +   + FD +L DAPCS++G +RRHPD+ W R   D+
Sbjct: 301 QNFTRLGLKPYRIIHGDATHPGEWWDGRPFDRILADAPCSASGVVRRHPDIKWLRRESDL 360

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + A  QRK L      +  GG +++  CS+  +++   V+  L   P    L+P +   
Sbjct: 361 AQFAEIQRKTLDALWQTLVKGGKLLYVTCSIFAEENGLQVESFLNHHP-DARLLPFSVPE 419

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                           ++ PD+           DGFF   L +L
Sbjct: 420 IVEG------------QLLPDLH---------HDGFFYALLEKL 442


>gi|296114107|ref|YP_003628045.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis RH4]
 gi|295921801|gb|ADG62152.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis RH4]
          Length = 448

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 197/471 (41%), Gaps = 51/471 (10%)

Query: 1   MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           MK+ +         +R     ++  ++    SL+ LLD     +         +     +
Sbjct: 1   MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLKSTEMSS-----RGFAHEL 54

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
           +  TLR    +  + + ++ + +      +Q  + + + Q++Y+++ +YA ++  VE A 
Sbjct: 55  LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111

Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161
           +     +   LVN+ILR+  + K +  +++     +P W  ++L+  +            
Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGRTLR 171

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
               + +                D     H L ++          +    I  LP F EG
Sbjct: 172 FAAPIFLRVNTKFSDNASYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231

Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274
              VQDA A +   L         ++ SVLD+C APGGKT     +     +TA+D  + 
Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDGDRI 291

Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           RL+++  N+ RL L      ++  D   +   + FD +L+DAPC++TG +RRHPD+   R
Sbjct: 292 RLKRVHENISRLKLDTKDVSVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              DI  +   QR +L    S +K GG++++  CS+ K ++E  +   LR++        
Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +A    + +   +  +   +  P   +       G DGF+   L +  +
Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448


>gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ATCC 27244]
 gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ATCC 27244]
          Length = 435

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 202/454 (44%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
              +N R      L  V +   SL+ +L+         ++S+RD+ L   +    LR   
Sbjct: 9   AKNLNLRAQVIKTLLAV-QNGQSLSSVLNQHI-----NMVSERDRGLYHELTLGCLRQWY 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + A+   +L   L     +L+  L + + QIL   +  +A +   V  AK+       +
Sbjct: 63  SLKAITLPLLTKPLD--NEALESCLYLGLYQILCTRIPVHAAISETVNAAKQ-LGFEPMS 119

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN+ILRRVSRE  E    +     +P W  +RL+  +  E+V  +  A      + L 
Sbjct: 120 GLVNAILRRVSRETDEFETALNNTHGLPSWLFKRLKKDWP-EQVEPLCQALKQVAPLTLR 178

Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232
           V   +   + +   L+   +            +     +I  LPGF  G + VQD  A +
Sbjct: 179 VNERQVSRDEYLDILDEEQIDARECEFSDVGIVLRQTGNITLLPGFEAGGFSVQDEHAQL 238

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL--HL 288
              L   L+   V+D CAAPGGKTA      +  K+ A+D   +R+ ++  NL+RL  +L
Sbjct: 239 CATLLPDLDGKVVVDACAAPGGKTAHILERFNPKKLIAIDQDPKRIVRIGENLERLALNL 298

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  +  ++  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 299 DNVEILVADATTWQAQEPVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTVALQQQIL 358

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            Q    +K GG +++  CS+ K ++E+ + K     P   E+          I     + 
Sbjct: 359 QQMWQQLKVGGTLLYITCSILKTENEQQMVKFFAEHPNAKEIK---------ITADWGIE 409

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P             DGF+   ++++ 
Sbjct: 410 QMHGRQLLPSDQSG--------DGFYYCRIQKIA 435


>gi|239939911|ref|ZP_04691848.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL
           15998]
 gi|239986397|ref|ZP_04707061.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL
           11379]
 gi|291443343|ref|ZP_06582733.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346290|gb|EFE73194.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL
           15998]
          Length = 477

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 101/467 (21%), Positives = 169/467 (36%), Gaps = 43/467 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R ++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 20  PVRFLAFEALRAVDERDAYANLVLPPLLKKARAKGDFDGRDAALATELVYGTLRRQGTYD 79

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L + V Q+L   +  +A V  +VE A+        AK V
Sbjct: 80  AIVAACIDRPLREVDPPVLDVLNMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+V+   ++                 +A +   P W    L +  G  R     + 
Sbjct: 139 NAVLRKVTAHDLDGWVEKVAPPYDEDAEDHLAVVHSHPRWIVSALWDALGGGRAGIEDLL 198

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
           +A      + L  +    T    + A+                        +L    E  
Sbjct: 199 EADNERPEVTLVARPGRSTTEELVKALGEDNSLPGRWSPYAVRMAEGGEPGALEAVRESR 258

Query: 223 WWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274
             VQD  + +       +     +   LD CA PGGK A L       GA + A +    
Sbjct: 259 AGVQDEGSQLVAAALAAVPVEGRDTRWLDGCAGPGGKAALLAALAAERGATLLAAEKQPH 318

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           R   +   L       + I             FD +L+D PCS  G +RR P+  W R  
Sbjct: 319 RARLVERALAGNPGPYQVITADGTRPPWLPGTFDRILMDVPCSGLGALRRRPESRWRRRA 378

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL 393
           +D+   A  QR LL + +  V+ GG+V ++ CS    ++  VV+ VL+     PVE   +
Sbjct: 379 EDLEAFAPLQRGLLREALKAVRVGGVVGYATCSPHLAETRVVVEDVLKGRGGEPVEAEWI 438

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++        A+   P+  +++ P +         G D  +   LRR
Sbjct: 439 DARPLLPGVPALGEGPD--VQLWPHL--------HGTDAMYLALLRR 475


>gi|119503584|ref|ZP_01625667.1| sun protein [marine gamma proteobacterium HTCC2080]
 gi|119460646|gb|EAW41738.1| sun protein [marine gamma proteobacterium HTCC2080]
          Length = 438

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 188/439 (42%), Gaps = 38/439 (8%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
              SL   L           LS  ++ LV+ +V  TLR  PR++ +   +L      K  
Sbjct: 20  NGESLVRALPKGLEP-----LSLENRPLVQELVYGTLREWPRLEGIALQLLRKPPRAKDA 74

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI--EL 138
            +  L+   + Q+  L+V  +A V   VE AK        A L+N  LR   R+K   E 
Sbjct: 75  DVLCLILTGIHQLSGLNVPSHAAVGETVEAAKS-LGKSWAAGLINGCLRNYQRQKGALED 133

Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLN- 194
               +  + +P+W  + +   +  ++   I+ A      + L V         +   L  
Sbjct: 134 QLTESQSNALPDWLWQAICKQWP-DQASEIAGASREHPPMTLRVNLQRGSRADYVSTLQN 192

Query: 195 -----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
                A+          + P  + S+PGF EG   VQDASA +  Q     N+ S+ D C
Sbjct: 193 ADIPVAINPHIATAITLQTPRPVSSIPGFLEGWSSVQDASAQLAAQFLQPNNDESIFDAC 252

Query: 250 AAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKK 305
           AAPGGKT         AKV A D+S +RLE L+ N  RL+L    + +    A      +
Sbjct: 253 AAPGGKTCHVLECAPKAKVLAADISDQRLESLQENSTRLNLPLDVKVVDATQASVTLGPR 312

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FDA+L D PCS+TG IRR+PD+  TR   DI      QR +L      VKPGG +++  
Sbjct: 313 QFDAILADVPCSATGVIRRNPDIKITRKAADIATFHQQQRDILEGLWPLVKPGGRLLYVT 372

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CSL + +++ V++      P   E++PL                 G +R       +   
Sbjct: 373 CSLLEAENDNVIEAAQSQLP-QCEVMPLAG---------------GTLRFNTRFGLQTLP 416

Query: 426 VSSGMDGFFAVALRRLIQP 444
             +  DG +   L++++ P
Sbjct: 417 TLNNGDGLYFSLLKKVVTP 435


>gi|326573497|gb|EGE23463.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis O35E]
          Length = 448

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 103/471 (21%), Positives = 199/471 (42%), Gaps = 51/471 (10%)

Query: 1   MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           MK+ +         +R     ++  ++    SL+ LLD     +         +  V  +
Sbjct: 1   MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLKSTEMSS-----RGFVHEL 54

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
           +  TLR    +  + + ++ + +      +Q  + + + Q++Y+++ +YA ++  VE A 
Sbjct: 55  LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111

Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161
           +     +   LVN+ILR+  + K +  +++     +P W  ++L+  +            
Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGRTLR 171

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
               + +                D     H L ++          +    I  LP F EG
Sbjct: 172 FAAPIFLRVNTKFSDNASYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231

Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274
              VQDA A +   L         ++ SVLD+C APGGKT     +     +TA+D ++ 
Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDGNRI 291

Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           RL+++  N+ RL L      ++  D   +   + FD +L+DAPC++TG +RRHPD+   R
Sbjct: 292 RLKRVHENISRLKLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              DI  +   QR +L    S +K GG++++  CS+ K ++E  +   LR++        
Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +A    + +   +  +   +  P   +       G DGF+   L +  +
Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448


>gi|166713736|ref|ZP_02244943.1| Sun protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 437

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 199/453 (43%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L              RD+ LV AI    +R  P
Sbjct: 8   AAGVASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D  L   L   LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 64  AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 122

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   AG    P W ++++   +  +   + I+ A ++P+++ +
Sbjct: 123 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQVRADWGERAEGIFIASAQMAPMWLRV 179

Query: 181 -TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D   +  +L  + +      +            +  LPGFAEG   VQD SA   
Sbjct: 180 QHSRIDPAAYVARLAELGISAQTDAVLPDAVRLHSAVPVSQLPGFAEGDVSVQDGSAQQV 239

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                   +  VLD CAAPGGK A       G ++ ALDV  RRLE+++  L R    A+
Sbjct: 240 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLAALDVDARRLERVQQTLQRSVASAQ 299

Query: 292 DIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             ++             + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 300 IALQAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 359

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V   L+ +P   +  PL + +  +       
Sbjct: 360 LDATWRTLRPGGQLLYTTCSLLARENQTQVDAFLQRTP-DAQPQPLGARFGHAAGPG--- 415

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +        DGFF   L +
Sbjct: 416 -------------RQRFPGEQHCDGFFYALLLK 435


>gi|325963042|ref|YP_004240948.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469129|gb|ADX72814.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 533

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 170/476 (35%), Gaps = 51/476 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLV+  +L  V  +      +L           L +RD      +    LR     DA
Sbjct: 72  PARLVAFEVLRAVAAEDAYANLVLPARIRHH---GLDKRDAGFATELTYGALRGQGTYDA 128

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L   +   L +   ++   LR+ V Q+L + V  +A +D  V  A+        + L+N
Sbjct: 129 ILARCVDRPLDQLDPAVLDALRIGVHQLLAMRVPAHAALDQTVGLARAVIG-AGPSALIN 187

Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENFYGKE-----RVLAI 168
           ++LR+V+   +E              +  A     PEW    +             +  +
Sbjct: 188 AVLRKVAAHTLEEWLDLLVAGETDETKIAALRFAHPEWIVRAMRQSLVAHGRSATEISDL 247

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226
            +A  +   ++L     +      L    +P              +       +G   VQ
Sbjct: 248 LEADNAAPVVNLVALPGLGNLDEALENGAIPGELVEGSALSSGGDLGRFSSVRQGTMRVQ 307

Query: 227 DASASIPVQLFGTLNNLS------------VLDLCAAPGGKTAQ----LIVSGAKVTALD 270
           D  + +  +                      LDLCA PGGK A         GA + A +
Sbjct: 308 DVGSQLVARAMAAAELSQSTGGQDSGTPEAWLDLCAGPGGKAALLGALAQQQGATLLANE 367

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDV 328
            +  R   +   L  +     ++   D  D   ++   FD VLVD PCS  G +RR P+ 
Sbjct: 368 TAPHRARLVSQALSAVPHETWEVRTGDGRDLGLERPESFDRVLVDVPCSGLGALRRRPES 427

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            W R   D+      QR+LL   ++ V+PGG+V +  CS    ++  VV   LR      
Sbjct: 428 RWRRSPKDLADLGPLQRELLASALAAVRPGGVVAYVTCSPHPAETTAVVADALRKRDDLE 487

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            L    +    S+  A+    E   ++ P +         G D  F   +R+  +P
Sbjct: 488 LLDAGAALDRVSLPGALGAGHESTAQLWPHV--------HGTDAMFLALIRK--KP 533


>gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2]
 gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2]
          Length = 431

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 113/454 (24%), Positives = 201/454 (44%), Gaps = 41/454 (9%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             N RL++  LL    +++      +  E  DS    L  RD+   + +V   +R    +
Sbjct: 2   RTNVRLLAYRLLRKYEKEK-----FISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELL 56

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D  ++ +L         +++  LR+   Q+L+++ V DYA V   V+  K    N +F K
Sbjct: 57  DWYINQLLKK--KDVPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK----NENFKK 110

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LVN++LRR+          +  +   PEW      +F  ++ VL I      PL + L V
Sbjct: 111 LVNAVLRRLRTVPEPKELHL--VYSHPEWIVNYWRSFLPEKAVLRIMKWNQEPLPVMLRV 168

Query: 183 K---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                  E     L                + +++L   +       +G+  VQ  S+ +
Sbjct: 169 NSLAATKEEVIKILAEEGTEAIPGKHAPFSLIVRKLGVPMNDSRVINDGLASVQGESSQL 228

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                     L VLD CAAPGGKT    +L+    K+ A+D+S+ +++ +  +  RL L 
Sbjct: 229 VPFFMELRPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS 288

Query: 290 AEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           + +    DA       +  FD VLVDAPC+S GT R HP+VL   + +D  K +  Q ++
Sbjct: 289 SIETKIADAERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNKEDFEKFSEIQLRM 348

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           + Q    ++ GGI+++S C++ K+++ EVV++ +       E++ +     K  ++    
Sbjct: 349 VQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DAEVIDIRDKM-KEFEVEGIW 406

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              G++ + PD              F+   LR++
Sbjct: 407 DGYGFL-MLPDETITP---------FYISVLRKM 430


>gi|84622205|ref|YP_449577.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188574935|ref|YP_001911864.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|84366145|dbj|BAE67303.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519387|gb|ACD57332.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 437

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 124/453 (27%), Positives = 199/453 (43%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L              RD+ LV AI    +R  P
Sbjct: 8   AAGIASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D  L   L   LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 64  AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 122

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   AG    P W ++++   +  +   + I+ A ++P+++ +
Sbjct: 123 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQVRADWGERAEGIFIASAQMAPMWLRV 179

Query: 181 -TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D   +  +L  + +      +            +  LPGFA+G   VQD SA   
Sbjct: 180 QHSRIDPAAYVARLAELGISAQTDVVLPDAVRLHSAVPVSQLPGFADGDVSVQDGSAQQV 239

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR----LH 287
                   +  VLD CAAPGGK A       G ++ ALDV  RRLE+++  L R      
Sbjct: 240 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLAALDVDARRLERVQQTLQRSVPSAQ 299

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           +  +     D   +   + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 300 VALQAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 359

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V   L+ +P   +  PL + +  +       
Sbjct: 360 LDATWRTLRPGGQLLYTTCSLLARENQTQVDAFLQRTP-DAQAQPLGAQFGHAAGPG--- 415

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +        DGFF   L +
Sbjct: 416 -------------RQRFPGEQHCDGFFYALLLK 435


>gi|148358673|ref|YP_001249880.1| rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296108237|ref|YP_003619938.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148280446|gb|ABQ54534.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila str.
           Corby]
 gi|295650139|gb|ADG25986.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 427

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 200/458 (43%), Gaps = 52/458 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R  +  +L+ ++  R +L+ L+         + +S     + + I     R  
Sbjct: 1   MK--VNDRFNALKILTALIESRKNLSYLMS-------PQEISP----MTKEICYGFCRHY 47

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R+ ++ D ++          +  +L + + Q+ Y++  DYAVV   V    + K++   
Sbjct: 48  FRLQSIADTLINKRPK--DNEVWIVLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS-WA 104

Query: 121 AKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISPL 176
             LVN++LR   R +  +L+++A   +     P W  +RL+  +       I++A     
Sbjct: 105 KGLVNAVLRNFCRRQDHILEKLAAEPVFIYGQPNWLLQRLQKDWPNNW-QFIAEANDRHP 163

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227
            + L V      ++ +   L    +      +        +P  +++LPGFA+G   VQD
Sbjct: 164 PMTLRVNVLKNSVDEYLDLLKKSGIEAFKHPVVPDGITLAIPCDVMTLPGFAQGSVSVQD 223

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLD 284
           A+  +   L        VLD C APGGKT  ++   +      ALD+  +RL+++R NL+
Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283

Query: 285 RLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL L A  +    ++   +     FD +L+DAPCS+TG IRRH D+   R  ++I   + 
Sbjct: 284 RLDLQATVVQGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQ 343

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      + PGG++V++ CS+   ++E  + + +            +        
Sbjct: 344 VQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIARFVAEH---------SDCQVSDGK 394

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +         +I P           GMDGFF   LR+
Sbjct: 395 WSWGRWTGHGQQILPG--------EHGMDGFFYSVLRK 424


>gi|167772291|ref|ZP_02444344.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM
           17241]
 gi|167665394|gb|EDS09524.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM
           17241]
          Length = 450

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 111/461 (24%), Positives = 173/461 (37%), Gaps = 57/461 (12%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   +AR  ++  L  +          +D     +    L  R+     A+    L   
Sbjct: 25  MKK--DARYTAAQALLRMESAGAYSNLTIDSLIEKN---GLDAREGAFAAALFYTVLERR 79

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID VL       L      + Q LR+ V Q++++D V DYA V  +V   +       
Sbjct: 80  LTIDHVLAAYCARGLASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTRA-LGCAK 138

Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172
            +  VN +LR   R    +L          +     P W  E   + YG+   L +  A 
Sbjct: 139 ASGFVNGVLRAFLRADKAVLPVKGGTAERLSVEYSCPVWLVEAWLSAYGEAAALRVLRAS 198

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVW 223
           +    I L         +    +L A         P  G  L        SL  F EG++
Sbjct: 199 LGRPPIYLRANTLRVSAQQLCERLAAEGVAAQLAEPPAGCLLARGRVEPESLASFGEGLF 258

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLR 280
            VQD ++ +     G L    VLD+CAAPGGK+      + +  ++ A D+ ++R   ++
Sbjct: 259 HVQDRASQLCAAALGALPGERVLDVCAAPGGKSFTIAEHMENSGELVARDLHQKRARMVQ 318

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           C   RL L        DA  Y      FD VL D PCS  G IRR P++ + +    +  
Sbjct: 319 CGAKRLGLSIIHASAGDAAVYDASLGSFDRVLCDVPCSGFGVIRRKPEIKY-KPQKSVEG 377

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q K+L     ++K GG +V+S C+L   ++E VVQ++L  +     +V       +
Sbjct: 378 LPEIQYKILKTSTHYLKSGGTLVYSTCTLLPAENERVVQRLLDETNGAFNIVEQRVYTGE 437

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                          DGFF   L++
Sbjct: 438 -----------------------------DTDGFFVSVLKK 449


>gi|256788927|ref|ZP_05527358.1| putative Sun-family protein [Streptomyces lividans TK24]
          Length = 451

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 101/462 (21%), Positives = 162/462 (35%), Gaps = 45/462 (9%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFR----LLSQRDQILVRAIVNVTLRFLPRIDA 65
           ++   L  V  +      +L      +  +        RD  L   +V  TLR     DA
Sbjct: 2   LAFEALRAVDERDAYANLVLPPLLRKAREKEGPEKFDARDAALATELVYGTLRRQGTYDA 61

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++   +   L      +  +L + V Q+L   +  +A V  +VE A+    +   AK VN
Sbjct: 62  IIADCVDRPLREVDPPVLDVLSLGVHQLLGTRIPSHAAVSASVELARVVLGD-GRAKFVN 120

Query: 126 SILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAISD 170
           ++LR+V+R+ ++                 +A +   P W    L +  G  R     +  
Sbjct: 121 AVLRKVARDDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEELLA 180

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWVQ 226
           A      + L  +    T    L       G      +         ++    E    VQ
Sbjct: 181 ADNERPEVTLVARPGRATREELLGEEAAVPGRWSPYAVRLSEGGEPGAVDAVRENRAGVQ 240

Query: 227 DASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEK 278
           D  +               +   LD CA PGGK A L       GA + A +    R   
Sbjct: 241 DEGSQLVALALANAPLDGPDRRWLDGCAGPGGKAALLGALAAERGAFLLASEKQPHRAGL 300

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +   LD      + I             FD VLVD PC+  G +RR P+  W R  +D+ 
Sbjct: 301 VARALDGNPGPYQVIAADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRPEDLD 360

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             A  QR LL   +  V+ GG+V ++ CS    ++  VV  VL+  P   EL+       
Sbjct: 361 GFAPLQRGLLRNALEAVRVGGVVAYATCSPHLAETRAVVTDVLKQHPGT-ELLDARPLLP 419

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +         +++ P +         G D  +   LRR
Sbjct: 420 GVPGLGEGPD----VQLWPHV--------HGTDAMYLALLRR 449


>gi|41407232|ref|NP_960068.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395583|gb|AAS03451.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 464

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/465 (22%), Positives = 168/465 (36%), Gaps = 51/465 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V  +       L     +   R +  RD      +   T R    +DA
Sbjct: 18  PARAAAFEVLRAVSERDAYANLALPALLRE---RGIIGRDAAFATELTYGTCRTRGLLDA 74

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+              L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN
Sbjct: 75  VIGAAAGRPPEAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQA-AIEFDSARAGFVN 133

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLA--ISD 170
            +LRR++                       A +   P W  +   +  G        +  
Sbjct: 134 GVLRRIAGRDERSWVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAAELDAVLA 193

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +         A  +   +       +         L    +G+  VQD
Sbjct: 194 SDDERPQVHLAARPGVLTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRDGLALVQD 253

Query: 228 ASASIPVQL----FGTLNNLSVLDLCAAPGGKT--------AQLIVSGAKVTALDVSKRR 275
             + +  +         +    LDLCA PGGKT         +   S  +VTA++ + RR
Sbjct: 254 EGSQLVARALTLAPVDGDCGRWLDLCAGPGGKTALLASLGAQRFSESQFRVTAVEPAPRR 313

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            + +  N     L   +++ +D      +  FD VLVDAPC+  G +RR P+  W R   
Sbjct: 314 ADLVVENTR--GLP-VEVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWRRQPG 370

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D+      QR+LL   I+  +PGG+V+++ CS    ++  VV   LR  P  V  +    
Sbjct: 371 DVPALTKLQRELLGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHP--VSALDARP 428

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +    D+         +++ P           G D  FA ALRR
Sbjct: 429 LFEPVADLGDGPH----VQLWPH--------RHGTDAMFASALRR 461


>gi|254302720|ref|ZP_04970078.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322912|gb|EDK88162.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 434

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 194/437 (44%), Gaps = 37/437 (8%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
            K      +L+  + +     LS +++  +  I    +R    +D +++         +K
Sbjct: 15  DKGAYSNIVLNDAFRE---FFLSPKEKAFMTEIFYGVIRNKKFLDYIIERYTK---DIRK 68

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI--- 136
             ++ LLR+S+ QI +++  D  VV  A E AK+   +   +K +N  LR   R K    
Sbjct: 69  EWIRNLLRISIYQITFMNSDDKGVVWEATELAKKY--STAISKFINGTLRNYLRNKDSEL 126

Query: 137 ---ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK------FDIE 187
              +  +    +  IP+WF + LE  YG E +     +     Y+ + V        + E
Sbjct: 127 KRLDDEKNYEILYSIPKWFYDTLEKQYGNENLKQAITSLKKIPYLSVRVNKLKYSEEEFE 186

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
            +  + +  ++             I++   F  G    QDAS+ +  +  G + N  VLD
Sbjct: 187 EFLKEKDIQIIKKVDTVYYVNSGLIINSEEFKTGKIIAQDASSYLAAKNLGVMPNELVLD 246

Query: 248 LCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCP 303
           +CAAPGGKTA   + + +  +V A+D+ + +++ +  N+ +L +     I +D       
Sbjct: 247 ICAAPGGKTAVLAEEMKNSGEVIAIDIHQHKIKLIDTNMKKLGIDIVKAIVIDARNVNKQ 306

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FD +LVD PCS  G IR+ P++L++++ ++I + A  Q ++L      +K GG +++
Sbjct: 307 GRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEILNSAADILKDGGELIY 366

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C++  +++ + ++K L                +   +++      G           I
Sbjct: 367 STCTITDEENTDNIKKFLEERKEFKV-----EKLYIPENVSGDYDKLGGF--------CI 413

Query: 424 DGVSSGMDGFFAVALRR 440
           +     MD F+ + L++
Sbjct: 414 NYKEEIMDNFYIIKLKK 430


>gi|306784137|ref|ZP_07422459.1| SUN protein [Mycobacterium tuberculosis SUMu003]
 gi|306797229|ref|ZP_07435531.1| SUN protein [Mycobacterium tuberculosis SUMu006]
 gi|306803111|ref|ZP_07439779.1| SUN protein [Mycobacterium tuberculosis SUMu008]
 gi|308331083|gb|EFP19934.1| SUN protein [Mycobacterium tuberculosis SUMu003]
 gi|308342392|gb|EFP31243.1| SUN protein [Mycobacterium tuberculosis SUMu006]
 gi|308350182|gb|EFP39033.1| SUN protein [Mycobacterium tuberculosis SUMu008]
          Length = 457

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 109/463 (23%), Positives = 167/463 (36%), Gaps = 46/463 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V  +      +L       A R +  RD      +   T R    +DA
Sbjct: 15  PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 71

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+      S       L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN
Sbjct: 72  VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170
            +LR ++                       A +   P W  +   +  G     + A+  
Sbjct: 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190

Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +  + T       +   +       +         L    +G   VQD
Sbjct: 191 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250

Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279
             + +  +              LDLCA PGGKTA L        A+VTA++ S  R + +
Sbjct: 251 EGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 310

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             N     L   +++ +D         FD VLVDAPC+  G +RR P+  W R   D+  
Sbjct: 311 AQNT--RGLP-VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR+LL   I+  +PGG+V+++ CS    ++   V   LR  P+             
Sbjct: 368 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRRPVHAL-----DTRPL 422

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +   L     +++ P           G D  FA ALRRL 
Sbjct: 423 FEPVIAGLGEGPHVQLWPH--------RHGTDAMFAAALRRLT 457


>gi|319948960|ref|ZP_08023065.1| RNA binding Sun protein [Dietzia cinnamea P4]
 gi|319437398|gb|EFV92413.1| RNA binding Sun protein [Dietzia cinnamea P4]
          Length = 446

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 165/459 (35%), Gaps = 45/459 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +++ V  +       L  E   +    L  RD  L   +   TLR    +D ++   
Sbjct: 2   ALTVMAAVRERAAYANLTLPAELRRAK---LDTRDAALATELTYGTLRAQGLLDRIITLA 58

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH----------- 119
               +      +  L+R+   Q+L+  +  +A VD +VE A+     R            
Sbjct: 59  SSRPVEEIDPPVLDLIRLGAYQLLFTRIGAHAAVDTSVEAARTAGLGRAGAFVNAVLRKI 118

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE--RVLAISDACISPLY 177
            A+  ++ +  +     + + R+A  +  PEW      +  G     +  +  A  +   
Sbjct: 119 SARDADAWVEALRDGVTDPVARMAIGTAHPEWIARAFADSLGAAAGELPELLAADDARPR 178

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
           + L  +      E  A              +        +L    EG+  VQD  + +  
Sbjct: 179 VHLAARPGAISAEELALVTGGREGELSPYAVHLDSGDPGTLDAVREGLAAVQDEGSQLVA 238

Query: 235 QLFGTLNNL-----SVLDLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLDR 285
                           LDL A PGGK         + G  +T ++VS  R + +R     
Sbjct: 239 LAAARAPLDGPDGGRWLDLAAGPGGKAVLLGALAEIEGGTLTGVEVSPHRADLVREATRD 298

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L      +   D  D   +  FD VL+DAPCS  G +RR P+  W +   DI      QR
Sbjct: 299 L---PVTVHTADGRDPGLEPGFDRVLLDAPCSGLGALRRRPEARWRKTAADIPALVSLQR 355

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY----WKSI 401
           +LL   +  V+PGG+V+++ CS    ++  VV +  R     VE + +            
Sbjct: 356 ELLDSAMRLVRPGGVVLYATCSPHLSETVSVVHEAARR--DDVETLDVREILADIGGAVG 413

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                L    W+++ P           G D  F  ALRR
Sbjct: 414 GRPDGLGEGPWVQLWPH--------RHGTDAMFMAALRR 444


>gi|300115538|ref|YP_003762113.1| sun protein [Nitrosococcus watsonii C-113]
 gi|299541475|gb|ADJ29792.1| sun protein [Nitrosococcus watsonii C-113]
          Length = 435

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 200/456 (43%), Gaps = 38/456 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R++++ +L  V+ +  SLT +L       A   L  R+Q   + +    +R+L
Sbjct: 1   MAKSANTRIIATSVLVRVLDQGRSLTGVLP-----PAMAHLPAREQAFTQTLCYGVVRWL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK---RDKEN 117
           PR+D ++  +L   L  +   L  LL + + Q+  L +  YA +   V  A+   +    
Sbjct: 56  PRLDYLVQKLLHKPLRARDRDLYALLLLGLYQLTELGIPSYAALSETVNAAENLGKPWAK 115

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL- 176
           +     + + LR  +  + ++    A  +  P+W  + + + +       I+     P  
Sbjct: 116 KMLNGTLRAYLRNETALQAQVATHEAAHTAHPQWLLDTIRHSWPDHWPQIITANNNHPPL 175

Query: 177 YIDLT-VKFDIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            + +  ++ + E +  +L         +  T    + E P  + +LPGF +G   VQD +
Sbjct: 176 SLRINRLQNNRENYLRELRRNDIKAWPIPHTESGVILEQPRQVTTLPGFLKGQISVQDGA 235

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
               V L        VLD CAAPGGKT+ +       A + ALD+   RL +L  NL RL
Sbjct: 236 GQRAVPLLALAPGQRVLDACAAPGGKTSHILELEPQLATLLALDLDATRLGRLENNLKRL 295

Query: 287 HLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            L AE I    +    +     FD +L+DAPCS +G IRRHPD+   R   DI+  A  Q
Sbjct: 296 QLKAEVIQGNALQPDAWWDGIPFDRILLDAPCSGSGVIRRHPDIKVLRRESDILPLAVLQ 355

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           ++LL      + PGG++++  CS+   ++E  + + L S P   E         + +++ 
Sbjct: 356 KRLLSALWPLLAPGGMLLYCTCSILPIENERQIHEFLLSHPEGQE---------RPLEVP 406

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             L      ++           +  +DGF+   L +
Sbjct: 407 WGLPQTVGRQLL--------TGTEELDGFYYACLEK 434


>gi|227893309|ref|ZP_04011114.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
           DSM 16047]
 gi|227864889|gb|EEJ72310.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
           DSM 16047]
          Length = 455

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 196/461 (42%), Gaps = 45/461 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +  +AR +S   L  V+         L+  + +S    LS  DQ L   IV  T+++  
Sbjct: 14  STSKSARAISLATLIKVLEDGSYSNISLNNSFKNS---NLSVADQNLATRIVYGTIQYRL 70

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L  ++ + L      +  LL +S+ QI++L+ V + AV+D A + AK+   +   
Sbjct: 71  FLEYQLKGLIRTKLTE--RYINPLLLMSLYQIIFLNKVPNRAVLDEANKLAKQFGRHHSS 128

Query: 121 A-KLVNSILRRVSREKIELLQRIAGISII------PEWFKERLENFYGKERVLAISDACI 173
             ++VN ILR   R  + L +    +  +      PEW  +      G ER  +I  +  
Sbjct: 129 GYRIVNGILRSFIRRGVILPKENNKLEYLSVKESVPEWLVKYFVKNLGIERTQSILTSIN 188

Query: 174 SPL--YIDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQ 226
            P    + ++   +      +L                +      I     F +G   +Q
Sbjct: 189 KPAKNCVRISSLVNATEVFQRLKDEGYQPKWSNLSDHDVTLKHGGIGQSDLFKKGQLTIQ 248

Query: 227 DASASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCN 282
           D +AS+ V+ F         VLD C+APGGKT Q+  +     V ALD+ +++L  +  N
Sbjct: 249 DEAASLVVEAFDFDKTQVEHVLDACSAPGGKTVQIAENLADGDVIALDIHEKKLRLVAEN 308

Query: 283 LDRLHL-YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
             R+H+         DA        K  F  +LVDAPCS  G +RR P++ +T+   D+ 
Sbjct: 309 AKRMHVADKIKTQACDARKAGKIFNKGEFTKILVDAPCSGLGLLRRKPEIRYTKSLQDLH 368

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q  +L      ++  G +V+S CS+  +++EEVV+K L+     V          
Sbjct: 369 SLQKIQLAILDSVSVPLQKNGELVYSTCSISMEENEEVVKKFLQRHSQFV---------L 419

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           K   ++   S  G ++I PD         +G DGFF    +
Sbjct: 420 KPFKLSKLESKTGMLKIMPD--------QNGNDGFFIAKFK 452


>gi|300934517|ref|ZP_07149773.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           resistens DSM 45100]
          Length = 551

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/472 (21%), Positives = 166/472 (35%), Gaps = 41/472 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           SG   R +   +L  V ++       L           L+ RD      +   TLR L  
Sbjct: 79  SGDRVRDLVLQVLRDVTQEGAFANLALPKALKQER---LTGRDAAFATELTYGTLRALGL 135

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DAV+       + +    +  +LR+   Q+L   V D+A VD AV  AK + E +  + 
Sbjct: 136 LDAVIAKAAGRPVAKIDSMVLDILRLGAYQVLRTRVDDHAAVDTAVNLAKANGEGK-ASG 194

Query: 123 LVNSILRRVSREKIELLQRIAG----------ISIIPEWFKERL------ENFYGKERVL 166
            VN +LR ++R   E                     P W            +      + 
Sbjct: 195 FVNGVLRTITRTPAEDWLARVAGGDGIADLGLRHAHPGWIAAAFNSALGGNDDAPAPDLE 254

Query: 167 AISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
           +   A      + L  +      E  A              +     +   +    + + 
Sbjct: 255 SALAADDERPQVHLAARPGQMSGEELALVTGGDEGKFSPYAVYLSEGAPGDIEPVRDRLA 314

Query: 224 WVQDASAS--------IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKR 274
            VQD  +           +     ++    LDLCA PGGKTA +        A +D  + 
Sbjct: 315 SVQDEGSQLIALALVRASIGSGEAVDRGRWLDLCAGPGGKTAFIASWAVAEQARVDAIEV 374

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPD 327
              + +     +     ++   D            P++ FD VLVDAPCS  G +RR P+
Sbjct: 375 APHRAKLVTSAVENLPVNVHVGDGRKVREIAGLDVPQQGFDRVLVDAPCSGLGALRRRPE 434

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
             W +  DDI      Q++LL   +    P G+V++S CS  + ++ +VV+ V   +   
Sbjct: 435 ARWFKQPDDIPSLVALQKELLTSALEVTAPRGVVIYSTCSPHQAETTDVVRAVADKTGAE 494

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +  V        + D A  LS     R       ++     G D  F  ALR
Sbjct: 495 ILDVREYLPELAATDAAARLSD--GARTADPRFVQLWPHRHGTDAMFIAALR 544


>gi|33866211|ref|NP_897770.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102]
 gi|33639186|emb|CAE08194.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102]
          Length = 441

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 185/467 (39%), Gaps = 60/467 (12%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
             G+  R ++  +L  V          L+    +     L+  D+ L   +    +R   
Sbjct: 6   TKGLAPRRLAWEVLQAV-AAGAYADVALERALREHP---LAGADRGLATELAYGAIRRRR 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA LD +      ++   L+ LL V + Q+L++  +   A V+  V+ AK        
Sbjct: 62  PLDAWLDRLGRIPASKQPPKLRWLLHVGLYQLLWMERIPASAAVNTTVDLAKAV-GLARL 120

Query: 121 AKLVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           A +VN +LR         ++     +    +A    +P+W    L  + G E   A++ A
Sbjct: 121 APVVNGMLRSALRARESGQLLDTPADWAAALALEHSLPDWLPPLLLQWRGAEGAAAVAAA 180

Query: 172 CISPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEG 221
           C     +DL V     + A  + A          +     G++++     + S PG+ +G
Sbjct: 181 CNQVPSLDLRVNPLRASRAEVMAALESAGISSHPIDGCPQGLQVEGHKGDLRSWPGYDDG 240

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
            W VQD +A     L        +LD CAAPGGKT  L   +   A++ A+D S  RL++
Sbjct: 241 HWCVQDRAAQWVTPLLAAQPGDRILDACAAPGGKTTHLAELVNDQAEIWAVDRSAGRLKR 300

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +  N  RL   +   +  DA      +      F  +L+DAPCS  GT+ RHPD  W   
Sbjct: 301 VAANAARLGHGSIQALAADAEQLLKDRPEWRGRFQRILIDAPCSGLGTLARHPDARWRMT 360

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
              I      QR LL   +  +   G +V++ C++   ++   V+ +L   P    L   
Sbjct: 361 PSAIEGLLPLQRSLLEGLLPLLAETGTLVYATCTIHPAENTAQVRWLLELHPALKLLDET 420

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                               +  PD         SG DGF+A  L+R
Sbjct: 421 --------------------QRWPD-------AESGGDGFYAAVLQR 440


>gi|84619221|emb|CAJ42345.1| hypothetical Sun-family protein [Streptomyces steffisburgensis]
          Length = 475

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 103/466 (22%), Positives = 167/466 (35%), Gaps = 45/466 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR----LLSQRDQILVRAIVNVTLRFLP 61
             R+++   L  V  +      +L      +  +        RD  L   +V  TLR+  
Sbjct: 22  PVRILAFEALRAVDERDAYANLVLPPLLRKAREKEGPEKFDARDAALATELVYGTLRWQG 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             DAVL   +   L      +  +L +   Q+L   +  +A V   VE A+    +   A
Sbjct: 82  TYDAVLASCVDRPLGDVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRA 140

Query: 122 KLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENF--YGKERVL 166
           K VN++LR+V++  ++                 +A +   P W    L +    G++ + 
Sbjct: 141 KFVNAVLRKVAQHDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRDGIE 200

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGV 222
            +  A      + L  +    T    L       G      +         ++    +G 
Sbjct: 201 ELLRADNERPEVTLVARPGRATAEELLGEDAAVPGRWSPYAVRLAEGGEPGAVEAVRDGR 260

Query: 223 WWVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278
             VQD  + +             +   LD CA PGGK A L    A+  AL V+  +   
Sbjct: 261 AGVQDEGSQLVAIALAGAPLDGPDRRWLDGCAGPGGKAALLGALAAERGALLVASEKQTH 320

Query: 279 LRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
               + R          +I  D          FD VLVD PC+  G +RR P+  W R  
Sbjct: 321 RAGLVARALEGNPGPYQVIAADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRP 380

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           DD+   A  QR LL   +  V+ GG+V ++ CS    ++  VV  VL+  P   ELV   
Sbjct: 381 DDLEGFAPLQRGLLRTALESVRVGGVVGYATCSPHLAETRAVVADVLKQYPDT-ELVDAR 439

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  D+         +++ P           G D  +   +RR
Sbjct: 440 PLLPGVPDLGEGPD----VQLWPH--------RHGTDAMYLALIRR 473


>gi|319744301|gb|EFV96665.1| RNA methyltransferase Sun [Streptococcus agalactiae ATCC 13813]
          Length = 440

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 124/451 (27%), Positives = 203/451 (45%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L  V  K       L+     S    LS +D+ LV  IV  T+     ++  
Sbjct: 9   ARGLALMTLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     + +  +  LL +S+ Q+LYLD + D+A+V+ AV  AK     +   KL+N
Sbjct: 66  LSHFI-VDRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLIN 124

Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--L 176
           ++LRRVS E            +R +    +P W  ++L + YG+ R LAI ++       
Sbjct: 125 AVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLNDQYGETRALAIMESLFERNKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T     +T    LN          L     +  S   F +G+  +QD S+ +    
Sbjct: 185 SLRVTDLSQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                N  VLD C+APGGKT+ +   ++   VTALD+   +LE +  N  RL L      
Sbjct: 245 LKVSGNDQVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKT 304

Query: 294 IEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA    +Y P+  FD +LVDAPCS  G IRR PD+ + +   D       Q  +L  
Sbjct: 305 KKLDASKAHEYFPEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++ ++++ +V++K L + P        N    +       +   
Sbjct: 365 VCQTLRKGGIITYSTCTIFEEENFQVIEKFLANHP--------NFEQVELSHTQEDIVKR 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I I+P+            DGFF   ++R+
Sbjct: 417 GCISISPEQY--------HTDGFFIGQVKRI 439


>gi|296110622|ref|YP_003621003.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
 gi|295832153|gb|ADG40034.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
          Length = 457

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 195/460 (42%), Gaps = 44/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R+++   L+ + +        L+          L + D+ L+  +V   ++     + 
Sbjct: 10  NPRVLAVQTLAKI-KNGAYSNLQLNQVIK---QHQLGEADKRLLTTLVYGVIQHRLTFEY 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   + +   +    +++LL  ++ Q+ +LD + ++A+ + ++E AK    +    K V
Sbjct: 66  WLTPFIGN--KKIDAWVRELLYTAMFQMEFLDKIPEHAIFNESIEVAK-ILGHVGTGKFV 122

Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +IL  ++R+         + +QR++    +P W    L   +G+E+  A+ +       
Sbjct: 123 TAILHNIARQGLRDIDDIKDPIQRLSIEKSLPVWLINELVKQHGEEKTRALVETINDAPS 182

Query: 178 IDLTVKF---DIETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             + V       +     L +    T                + S   + +G   +QD S
Sbjct: 183 QSIRVNTVVATDDDVVKSLESENYTTVKSLVADHAYIVSGGHVASSKAYHDGWLTIQDES 242

Query: 230 ASIPVQLFGT-LNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285
           A +PV+         ++LD  AAPGGKT Q+       AK+TALD+ + +++ +  N  R
Sbjct: 243 AMLPVESMHLTAEVKTILDAAAAPGGKTTQIAQCISADAKITALDIHEHKIKLINNNAQR 302

Query: 286 LHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           LH+       I++           FD +LVDAPCS  G +RR P++ + +  +D+   A 
Sbjct: 303 LHVADRIQTRILDARKVPNEIDTKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVQNLAQ 362

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      V   G++V+S C++  Q++++VV K L +     EL+P  +      +
Sbjct: 363 LQFDILDSVSQNVADNGMMVYSTCTILSQENDDVVTKFLLAH-TEFELIPTQTVKNLKSN 421

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +     + + P+  +         DGFF    ++  
Sbjct: 422 RGEDV-----LHVYPNDYQ--------TDGFFVATFKKRA 448


>gi|289664806|ref|ZP_06486387.1| hypothetical protein XcampvN_17488 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 436

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 198/453 (43%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L              RD+ LV AI    +R  P
Sbjct: 7   TAGVASRLAAARVLTAVFDQGRSLKTELAATLPGIG----DPRDRALVEAICFAVIRRRP 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D  L   L   LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 63  AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   AG    P W +++L   +  +   +  + A ++P+++ +
Sbjct: 122 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQLRADWGDRAEGIFTASAQMAPMWLRV 178

Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D   +  +L  + +      +            +  LPGFAEG   VQD SA   
Sbjct: 179 QRSRIDPAAYVARLVELGIRAHTDAVLPDAVRLHSAVPVSQLPGFAEGDVSVQDGSAQQV 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290
                   +  VLD CAAPGGK A       G ++TALDV  RRLE+++  L R    A 
Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERYPGLQLTALDVDARRLERVQQTLQRTVPNAQ 298

Query: 291 ---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                    D   +   + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 299 VALHAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V+  L+ +    +  PL + +  +       
Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQTQVEAFLQRT-ADAQAQPLGAQFGHAAGPG--- 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +        DGFF   L +
Sbjct: 415 -------------RQRFPGEQHCDGFFYALLLK 434


>gi|291612482|ref|YP_003522639.1| sun protein [Sideroxydans lithotrophicus ES-1]
 gi|291582594|gb|ADE10252.1| sun protein [Sideroxydans lithotrophicus ES-1]
          Length = 424

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 192/447 (42%), Gaps = 45/447 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V+    +LT +L           L+ +++  ++ +   TLR+  R+  +LD +
Sbjct: 8   AAKAVHKVVHGGRNLTQVLSETLR--KESKLTAQEKGALQDLCYGTLRYYSRLAYMLDSL 65

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           L   +      L  LL V++ Q+ +     + +VD AV  AK    N   + LVN++LR 
Sbjct: 66  LQRPVRE--PLLGSLLMVAIYQLEHTKAGKHVIVDQAVHAAK--NTNPAASGLVNAVLRN 121

Query: 131 VSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKFD 185
             R +        Q+        +W+   L+  YG++    +      P   + +  +  
Sbjct: 122 YLRRQSVLREAANQKEESHYAYRQWWINALKAQYGEQAAEIMQAGNRHPPMTLRVNARHT 181

Query: 186 IE-----TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                    A +  A  +      + E P  +  LP F EG   VQDA A          
Sbjct: 182 TAPGYQTVLAAQDIAAQIVEPDALILECPVPVEKLPKFNEGWVSVQDAGAQYAAHFLDVH 241

Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMD 297
           + + VLD CAAPGGKTA L+  +  ++ A+D  + RL ++R NL RL L A         
Sbjct: 242 DGMRVLDACAAPGGKTAHLLELADIELLAVDKDELRLGRVRENLQRLKLDAQVVCGDAAS 301

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
             D+   K F+ +L D PCS++G +RRHPD+ W R  +DI   A  Q ++L    S +  
Sbjct: 302 PEDWWDGKAFERILADVPCSASGVVRRHPDIKWLRRQEDIANFAVQQAQVLESLWSLLAS 361

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI--RI 415
            G ++++ CS+  +++++VV + L       ++                LS  G I  ++
Sbjct: 362 DGKLLYATCSVFARENQQVVAEFLARHDDASKIE---------------LSATGMIDGQL 406

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            PD            DGFF   L +  
Sbjct: 407 LPDRE---------HDGFFYALLHKQA 424


>gi|58580210|ref|YP_199226.1| hypothetical protein XOO0587 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424804|gb|AAW73841.1| Sun protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 473

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 124/453 (27%), Positives = 199/453 (43%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L              RD+ LV AI    +R  P
Sbjct: 44  AAGIASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 99

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D  L   L   LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 100 AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 158

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   AG    P W ++++   +  +   + I+ A ++P+++ +
Sbjct: 159 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQVRADWGERAEGIFIASAQMAPMWLRV 215

Query: 181 -TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D   +  +L  + +      +            +  LPGFA+G   VQD SA   
Sbjct: 216 QHSRIDPAAYVARLAELGISAQTDVVLPDAVRLHSAVPVSQLPGFADGDVSVQDGSAQQV 275

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR----LH 287
                   +  VLD CAAPGGK A       G ++ ALDV  RRLE+++  L R      
Sbjct: 276 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLAALDVDARRLERVQQTLQRSVPSAQ 335

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           +  +     D   +   + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 336 VALQAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 395

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V   L+ +P   +  PL + +  +       
Sbjct: 396 LDATWRTLRPGGQLLYTTCSLLARENQTQVDAFLQRTP-DAQAQPLGAQFGHAAGPG--- 451

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +        DGFF   L +
Sbjct: 452 -------------RQRFPGEQHCDGFFYALLLK 471


>gi|326563104|gb|EGE13377.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
           catarrhalis 12P80B1]
          Length = 448

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 198/471 (42%), Gaps = 51/471 (10%)

Query: 1   MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           MK+ +         +R     ++  ++    SL+ LLD     +         +  V  +
Sbjct: 1   MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLESTEMSS-----RGFVHEL 54

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
           +  TLR    +  + + ++ + +      +Q  + + + Q++Y+++ +YA ++  VE A 
Sbjct: 55  LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111

Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161
           +     +   LVN+ILR+  + K +  +++     +P W  ++L+  +            
Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGRTLR 171

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
               + +         +      D     H L ++          +    I  LP F EG
Sbjct: 172 FAAPIFLRVNTKFSDNVSYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231

Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274
              VQDA A +   L         ++ +VLD+C APGGKT     +     +TA+D    
Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQAQGSHQAVLDMCCAPGGKTTHLLEMFHMKHLTAVDSESA 291

Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           RL+++  N+ RL L      ++  D   +   + FD +L+DAPC++TG +RRHPD+   R
Sbjct: 292 RLKRMHENISRLKLDTKDISVVHADGTSWRSDRCFDVILLDAPCTATGVLRRHPDIGLLR 351

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              DI  +   QR +L    S +K GG++++  CS+ K ++E  +   LR++        
Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +A    + +   +  +   +  P   +       G DGF+   L +  +
Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448


>gi|227496158|ref|ZP_03926464.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis
           DSM 15434]
 gi|226834303|gb|EEH66686.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis
           DSM 15434]
          Length = 527

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 108/476 (22%), Positives = 185/476 (38%), Gaps = 51/476 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLVS   L+ V +       +L      +    L +RD     A+   TLR   R DA
Sbjct: 64  AARLVSLEALTKVRQDGGFANLVLPPMLDAAR---LDRRDAGFATALTYGTLRLQGRYDA 120

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++   +   L +    +  +LR+   Q+L + VA +A V   V+ A      R  A LVN
Sbjct: 121 IIAQCVDRRLDQLDGVVLDVLRLGTHQLLGMRVATHAAVSATVDLA-SHAAGRGAAGLVN 179

Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENF-----YGKERVLAI 168
           ++LRR+S++ +E                ++     P W  + L          +E + A+
Sbjct: 180 AVLRRISQKDLEQWLAELTEQAADELNALSATHSHPVWVVKALRQALASNDRPQEELEAL 239

Query: 169 SDACISPLYIDLTVKFDI---------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
            +A  +   + L  +  +            A + +A +       +         LP   
Sbjct: 240 LEADNADPEVVLCARPGLISPEHLVKEAEEATRGHAHVGDRSPYAVVLPGGDPGRLPAVR 299

Query: 220 EGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKT----AQLIVSGAKVTALDV 271
                V+D  + +   +         +   LDLCA PGGK     A+    GA++ A +V
Sbjct: 300 SSAAGVEDEGSQLVALVLSEAAVEGRDERWLDLCAGPGGKAALLGARAAQRGARLVANEV 359

Query: 272 --SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
              +  L +         +      +   +       +D VLVDAPCS  G++RR P+  
Sbjct: 360 TAHRAELVRASVRAVPEGVVEVRCDDGRLYGQAEPGRYDRVLVDAPCSGLGSLRRRPEAR 419

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPI 386
           W R   D+ + A  QR+LL+  ++ V+ GG+V +  CS    ++E VV+ V   L     
Sbjct: 420 WRRQPTDVAELAELQRELLVSALAAVRVGGLVAYVTCSPHVLETELVVRDVIRRLEREGR 479

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             E++       +   +  A +    +++ P +         G D  F   LRR  
Sbjct: 480 GAEVLHAGDVATRVAPVPPAGADRPMLQLWPHL--------DGTDAMFCALLRRTA 527


>gi|88856227|ref|ZP_01130887.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1]
 gi|88814546|gb|EAR24408.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1]
          Length = 454

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 101/466 (21%), Positives = 174/466 (37%), Gaps = 41/466 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    +AR V+  ++  V         LL +    +    LS  D  L   +   TLR  
Sbjct: 1   MSYAQSARRVALDVIMAVRESDAYANLLLPVHLDRAK---LSPADAGLATELTYGTLRMQ 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
              DAV+       + +    +  +LR++  Q+L + V  +A VD +V  AK     R  
Sbjct: 58  GYYDAVIAQAAGRPVSKIDPPVLDVLRLATHQLLSMRVPSHAAVDESVRLAKTI-GTRSA 116

Query: 121 AKLVNSILRRVSREKIELLQRI------------AGISIIPEW----FKERLENFYGKER 164
              VN++LR +++   E  +              A     P W    F++ L     ++ 
Sbjct: 117 VGFVNAVLRAITQHDAETWRERVIGAAGSGEEALALAYSHPMWVTRAFRQVLVAEGREDE 176

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           +  +  A   P  + +         A  ++  +     +               A G   
Sbjct: 177 LEGLLAADNVPARVSVAALPGFAD-AASIDVTVAEYSPVGGTLREGDPGKNAAIASGRAR 235

Query: 225 VQDA----SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRL 276
           VQD     +A    +    +   S LD+CA PGGK A L       GA + A ++   R 
Sbjct: 236 VQDEGSQLAALTLSRARPIVAGESWLDMCAGPGGKAALLAAEALIGGATLIANELIPARA 295

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           + +R  L         + E D  +        FD +L+DAPC+  G +RR P+  W +  
Sbjct: 296 KLVRNALAVFESPPV-VWEKDGVEIGQDHPEEFDRILLDAPCTGLGALRRRPEARWRKQP 354

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D+ +    Q  LL   ++ +KPGG++ +  CS    +++ +V  VLR  P  V  +   
Sbjct: 355 GDVAQLGAVQTALLHSALAALKPGGVLAYVTCSPHAAETKAIVGSVLRKVP-SVSKMDTP 413

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   +     + L     +++ P           G D  F   L +
Sbjct: 414 AVLREISKAELDLPEASHVQLWPH--------RHGTDAMFIQLLVK 451


>gi|300741740|ref|ZP_07071761.1| ribosomal RNA small subunit methyltransferase B [Rothia
           dentocariosa M567]
 gi|300380925|gb|EFJ77487.1| ribosomal RNA small subunit methyltransferase B [Rothia
           dentocariosa M567]
          Length = 580

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 172/498 (34%), Gaps = 67/498 (13%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLV+  +L+ V +       +L           L  RD      +   TLR     DA
Sbjct: 86  PARLVAFEVLNAVAQNDSYANLVLPGTIRAHH---LDHRDAGFATELTYGTLRSQGTYDA 142

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L       L +   +   +LR+ V Q+L + V  +A ++ +V  A+        A  VN
Sbjct: 143 ILAHCADRPLEKIGTTTLIVLRMGVHQLLSMRVPAHAALNQSVALARAQIGG-GPANFVN 201

Query: 126 SILRRVSREKIELLQ------------RIAGISIIPEWFKERLENF-----YGKERVLAI 168
           ++LRRVS    E               + A     P W    +             +  +
Sbjct: 202 AVLRRVSERSREEWYARLEADAKDDTEKFALAKSHPIWIVRSMRQALAAHGRSPAEIQEL 261

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226
            +A      ++L     I           +               +  L    EG    Q
Sbjct: 262 LEADNQAPVVNLIALPGIGDLQEAFEKGAVEGELVEDSALYSAGDLGRLESVREGTVRAQ 321

Query: 227 DASASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEK 278
           D  + +  +          + + LDLCA PGGK     A     GA+V A + +  R + 
Sbjct: 322 DVGSQLVTRALAAAPLEGQDSAWLDLCAGPGGKAALLAALGTQRGARVVANESAAHRAKL 381

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAPCSSTGTIR 323
           +  +L  L      ++  D  +                 P++ FD VLVD PCS  G +R
Sbjct: 382 VSQSLRPLSPDEYVVLTGDGREISQTLAQNAERLPAGIEPEQKFDRVLVDVPCSGLGALR 441

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R P+  W +   DI      QR+LL       +PGG++ +  CS    +++ +V ++L +
Sbjct: 442 RRPEARWRKSPRDIADLLPLQRQLLEAACEVTRPGGVIAYVTCSPHAAETQNIVAEILET 501

Query: 384 SPIPVELVP--LNSAYWKSIDMAMALSPEGWIRITPDM-------------------LEK 422
             + +      L S    S D   AL+ +      P +                     +
Sbjct: 502 GKVHLLDTQSILQSVALPSADGQSALAGDKAPGYRPQVRLKKSSSVRQEDILDEASTTAQ 561

Query: 423 IDGVSSGMDGFFAVALRR 440
           +   + G D  F    R+
Sbjct: 562 LWPHTHGTDAMFLALFRK 579


>gi|227495439|ref|ZP_03925755.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM
           15436]
 gi|226830986|gb|EEH63369.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM
           15436]
          Length = 487

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 169/471 (35%), Gaps = 48/471 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+   L  V  +      +L     +     L  RD      +V  TLR L R+D 
Sbjct: 29  KARTVAFETLLKVDVEDAYANIVLPKAITE---ANLDSRDASFATELVYGTLRNLARVDW 85

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE--------- 116
           V++  +   +      ++ +LR++  QIL+L V D+A V  +VE  K             
Sbjct: 86  VIEQCMPKKIADLDPEVRAILRLTAHQILHLRVPDHAAVAESVELTKHVAGFGVEKFVNG 145

Query: 117 -NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISD 170
             R   +       R  +     + R++ +   PEW                + + A+  
Sbjct: 146 VARAMVEHTPGEWERRIKTIDANVTRVSVLYSHPEWIVRAFAQALQAHGRNPKELTALLK 205

Query: 171 ACISPLYIDLTVKF---------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
           A      + L  +          D                   +         L     G
Sbjct: 206 ADNDNPKVMLCARPGQILPVELADDAERYLDAEVAPGAYSEWSVAITHGDPGKLAAVCHG 265

Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSK 273
              VQD  +        +L    +N   LD+CA PGGK     A   ++GA + A +VS 
Sbjct: 266 AAAVQDEGSQLVASALAELDLANDNGKWLDMCAGPGGKAGLVAAYAQLAGATLLANEVSA 325

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
            R   +   +        ++I  D      K  F  +++DAPCS  G +RR P+  W R 
Sbjct: 326 HRAHLVEQTVREF--DNVEVIVGDGRKIAEKGKFSRIILDAPCSGLGALRRRPESRWRRQ 383

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            +D+      Q +LL  GI  ++  G++ +  CS  + ++ + +Q++     I +     
Sbjct: 384 PNDLNGLIKLQAELLEAGIDALEKDGVLAYITCSPHESETVKQIQRIAGRDDIKILDSKA 443

Query: 394 NSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   ++ ++ +P G    +++ P +           D  F   ++++
Sbjct: 444 AVEKVSMSEIELSATPIGNGNSVQLWPHL--------HTTDAMFLCLIQKV 486


>gi|325926148|ref|ZP_08187509.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
           perforans 91-118]
 gi|325543493|gb|EGD14915.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
           perforans 91-118]
          Length = 436

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 202/453 (44%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L              RD+ LV AI    +R  P
Sbjct: 7   TAGVASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D  L   L  +LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 63  AYDIALRQWLERALPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   A  +  P W +++L   +  +   +  + A ++P+++ +
Sbjct: 122 GMVNAILRRAQREGFPAV---ADDAGWPSWLRKQLRADWGDRAEAIFTASAQMAPMWLRV 178

Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D   +  +L  + +      +            +  LPGFAEG   VQD SA   
Sbjct: 179 QRSRTDPARYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQDGSAQQV 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                   +  VLD CAAPGGK A       G ++TALDV  RRLE+++  L R    A+
Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLTALDVDARRLERVQQTLQRTVPDAQ 298

Query: 292 DIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             ++             + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 299 VALQAADAADPDAWWDGRPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V+  L+ +P   +  PL + +  +       
Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQRTP-DAQAQPLGAQFGHAAGAG--- 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +     +  DGFF   L +
Sbjct: 415 -------------RQRFPGETHCDGFFYALLLK 434


>gi|282853850|ref|ZP_06263187.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes J139]
 gi|282583303|gb|EFB88683.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes J139]
 gi|314923543|gb|EFS87374.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL001PA1]
 gi|314966589|gb|EFT10688.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL082PA2]
 gi|314981514|gb|EFT25608.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL110PA3]
 gi|315092178|gb|EFT64154.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL110PA4]
 gi|315092889|gb|EFT64865.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL060PA1]
 gi|315103589|gb|EFT75565.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL050PA2]
 gi|327327412|gb|EGE69188.1| sun protein [Propionibacterium acnes HL103PA1]
          Length = 458

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 179/459 (38%), Gaps = 37/459 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR ++   L  V  +       L      +    L+ RD      +V+ T R   
Sbjct: 10  RKADPARRLAYSALLAVETQGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +++     +  + +  ++ +LR++  QIL + V   A V  +V+ A +    R   
Sbjct: 67  TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125

Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            LVN+I RR+S   +E              +A  ++ P W  +  ++  G + V     A
Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGTDEVEDALLA 185

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L V+  +       +          +   P +   +    EG   +QD  + 
Sbjct: 186 DNEPPVPTLVVRPGLAERDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244

Query: 232 IPVQLF-----GTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282
           + +                LDLCA PGGK+A            +TA+++ + R + +   
Sbjct: 245 LVILALLRATKVNSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVAKA 304

Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L R       ++  D      P++ F AVL D PCS  G++RR P+  W R   D+ + A
Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPEQSFSAVLADVPCSGLGSLRRRPEARWRRTPTDVEELA 363

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL+  ++  +PGG+V +  CS  + ++ +++     + P+ V   P   A    I
Sbjct: 364 QLQRRLLISAVNLARPGGVVEYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPDI 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A      I++ P           G D  F   LR+
Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451


>gi|302550113|ref|ZP_07302455.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467731|gb|EFL30824.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           viridochromogenes DSM 40736]
          Length = 472

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 101/463 (21%), Positives = 163/463 (35%), Gaps = 42/463 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 22  PVRILAFEALRAVDERDAYANLVLPPLLRKAREKDDFDARDAALATELVYGTLRRQGTYD 81

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           AV+   +   L      +  +L +   Q+L   +  +A V   VE A+    +   AK V
Sbjct: 82  AVIATCVDRPLGEVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRAKFV 140

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+V++  ++                 +A +   P W    L +  G  R     + 
Sbjct: 141 NAVLRKVAQHDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEELL 200

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWV 225
            A      + L  +    T    L       G      +         ++    +G   V
Sbjct: 201 HADNERPEVTLVARPGRATAEELLGEDAAVPGQWSPYAVRLTEGGEPGAIAAVRDGRAGV 260

Query: 226 QDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLE 277
           QD  +               +   LD CA PGGK A L       GA + A +    R  
Sbjct: 261 QDEGSQLVAIALANAPLDGPDRRWLDGCAGPGGKAALLGALAAERGATLLASEKQPHRAG 320

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            +   L+      + I             FD VLVD PC+  G +RR P+  W R  DD+
Sbjct: 321 LVARALEGNPGPYQVITADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRPDDL 380

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
              A  QR LL   +  V+ GG+V ++ CS    ++  VV  VL+  P   +LV      
Sbjct: 381 EGFAPLQRGLLRTALESVRVGGVVAYATCSPHLAETRAVVADVLKQVPDT-DLVDARPLL 439

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               D+         +++ P +         G D  +   +RR
Sbjct: 440 PGVPDLGDGPD----VQLWPHL--------HGTDAMYLALIRR 470


>gi|22331043|ref|NP_187924.2| NOL1/NOP2/sun family protein / antitermination NusB
           domain-containing protein [Arabidopsis thaliana]
 gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana]
 gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana]
 gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana]
 gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis
           thaliana]
          Length = 523

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 110/480 (22%), Positives = 190/480 (39%), Gaps = 63/480 (13%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--IL------------VRAIV 53
           R VS+  L  +         LL+ +   S    +S  ++                V  +V
Sbjct: 58  RAVSAVRLMRIEYGGAFAD-LLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVV 116

Query: 54  NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
             T+R+   +D ++  +     +    +  L Q+LR+ V +I+  D+  YAVVD  V  A
Sbjct: 117 GGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLA 176

Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157
           K           VN ILR+              V  +     + +A +   P W   R  
Sbjct: 177 KVALRP-GAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWV 235

Query: 158 NFYGKERVLAISDACISPLYIDLTVKFDIE----TWAHKLNAVMLPTG-------GIRLK 206
            + G +    +     +     L      +        +LN++ +P          +R+K
Sbjct: 236 KYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIK 295

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---G 263
              +++V      EG+  VQD SA + V +        ++D CAAPGGKT  +       
Sbjct: 296 TGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQ 355

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320
             + A+DV++ RL  L        +      I  D   +    +  +D VL+DAPCS  G
Sbjct: 356 GMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLG 415

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            + +  D+ W R  +D+++    Q +LL      VK GG++V+S CS+D +++E  V+  
Sbjct: 416 VLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAF 475

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L   P    + P+ S        +  ++ +G+           + V   +DG FA  L R
Sbjct: 476 LLRHP-EFTIDPVTSFVP-----SSFVTSQGFF--------LSNPVKHSLDGAFAARLVR 521


>gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana]
          Length = 531

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 107/473 (22%), Positives = 186/473 (39%), Gaps = 63/473 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--IL------------VRAIVNVTLRFL 60
           L  +         LL+ +   S    +S  ++                V  +V  T+R+ 
Sbjct: 73  LMRIEYGGAFAD-LLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVGGTIRWR 131

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D ++  +     +    +  L Q+LR+ V +I+  D+  YAVVD  V  AK      
Sbjct: 132 RYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVALRP- 190

Query: 119 HFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
                VN ILR+              V  +     + +A +   P W   R   + G + 
Sbjct: 191 GAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLGLDE 250

Query: 165 VLAISDACISPLYIDLTVKFDIE----TWAHKLNAVMLPTG-------GIRLKELPESIV 213
              +     +     L      +        +LN++ +P          +R+K   +++V
Sbjct: 251 ATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIKTGLQTVV 310

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALD 270
                 EG+  VQD SA + V +        ++D CAAPGGKT  +         + A+D
Sbjct: 311 QAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMD 370

Query: 271 VSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPD 327
           V++ RL  L        +      I  D   +    +  +D VL+DAPCS  G + +  D
Sbjct: 371 VNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRAD 430

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W R  +D+++    Q +LL      VK GG++V+S CS+D +++E  V+  L   P  
Sbjct: 431 LRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHP-E 489

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P+ S        +  ++ +G+           + V   +DG FA  L R
Sbjct: 490 FTIDPVTSFVP-----SSFVTSQGFF--------LSNPVKHSLDGAFAARLVR 529


>gi|229826167|ref|ZP_04452236.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC
           49176]
 gi|229789037|gb|EEP25151.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC
           49176]
          Length = 455

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 194/463 (41%), Gaps = 39/463 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +N R +   +    ++       +L     +  +  L +  +  +  +   ++  +  +D
Sbjct: 3   VNEREIVLDM-FLSLKDGKPGHIVLKDTLDNYLY--LDKASRGFITRLYEGSIEKMIYLD 59

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            V++    + + + K  ++ L+  +V QI ++D V D A ++ AV+ AK+ +     +  
Sbjct: 60  FVINSFSKTPVKKLKPIIKILMETAVYQIFFMDRVPDSAAINEAVKLAKK-RGLAGLSGF 118

Query: 124 VNSILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           VN +LR +           +  E ++ +     +P+   E     YG  +   I +A   
Sbjct: 119 VNGVLRNIARNRENIALPDKDKEYIRYLEVKYSMPKEVTEHFIKEYGNVQAEEILEAFEK 178

Query: 175 PLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSL------PGFAEGVWWV 225
              I   V       E    KL    +      +      I+ L        F  G + +
Sbjct: 179 KQPIVARVNGTRLTREELVKKLTEEDVKVSTDTVFPESLKILELDSLNFLESFENGDFVI 238

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNL 283
           QD S+    ++     N  VLD+CAAPGGKT          ++TA D+S+++   +  N+
Sbjct: 239 QDESSQFIGKIAELPQNAKVLDICAAPGGKTLLMAEKPEAERITACDISEKKTGLIEENI 298

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +R+ +     +  DA  +  K   D   V+ D PCS  G I R  D+ +    + I + A
Sbjct: 299 NRMGIKKVITMVNDATVFNKKFEEDFDLVICDLPCSGLGVIGRKRDIKYNITGNKIKELA 358

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV---VQKVLRSSPIPVEL-VPLNSAY 397
             QR++L     +VK GG ++FS C++ K ++EE    + +    SP+     +  +   
Sbjct: 359 KLQREILENAGKYVKKGGYLIFSTCTMSKLENEENFKFISEFSGFSPVDFSDKIKDSVVR 418

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +K+    ++ + +G+IR+ P  L        G DGFF     R
Sbjct: 419 YKAGGRLISEAEKGYIRLLPGEL--------GTDGFFISEFMR 453


>gi|88809208|ref|ZP_01124717.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
 gi|88787150|gb|EAR18308.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
          Length = 430

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 101/406 (24%), Positives = 157/406 (38%), Gaps = 33/406 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L  V          L+          L   D+ L   +   T+R+   +DA LD +
Sbjct: 2   ALEVLEAV-AAGAYADVALERALRQHP---LQAADRGLATELAYGTIRWRQWLDAWLDKL 57

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                 ++   L+ LL + + Q+L +  +   A V+ +VE AK     R  A +VN +LR
Sbjct: 58  GKVPARKQPPRLRWLLHLGLYQVLRMERIPPAAAVNTSVELAKGGPLAR-LAPVVNGLLR 116

Query: 130 ---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
                           E    +A    +P WF   L  + G  +   ++ AC     +DL
Sbjct: 117 AALRARDAGDGLVRPSEPEMELAQDQSLPLWFTRDLLRWCGPVQAAQVAQACNQVPPLDL 176

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASA 230
            +     + A   +                           +   PGF EG W VQD +A
Sbjct: 177 RINRLRASPAEMASRFAEHCMPTAPIPGCPDGLQVLDPAGDLRQWPGFDEGYWCVQDRAA 236

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
                L        VLD CAAPGGK   L   +    +V A+D S  RL+++  N  RL 
Sbjct: 237 QWVAPLLAVEAGQRVLDACAAPGGKATHLAELMGDQGEVWAVDRSPGRLQRVAANASRLG 296

Query: 288 LYAEDIIEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            +    +  D              FD +L+DAPCS  GT+ RHPD  W      I     
Sbjct: 297 SHCIHALAADASQLLQQRPQWMASFDRILLDAPCSGLGTLARHPDARWRISESSIADLVQ 356

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            Q  LL   +  +KPGG +V++ C++   ++ + +   L+  P  V
Sbjct: 357 LQAGLLDALLPLLKPGGRIVYATCTVHPAENTDQIHGWLQRHPQLV 402


>gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 440

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 107/466 (22%), Positives = 175/466 (37%), Gaps = 59/466 (12%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S  NAR  +   L  + R+       +       +F   +  D  L   +V   L+   
Sbjct: 6   NSSNNAREQAYKSLLKIDREGAFSNLEIRQTLSRLSF---NAEDANLYTLLVYGVLQNQI 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D  LD ++     R  +  +++LR++  QIL LD + DYA V  AV    +   NR  
Sbjct: 63  FLDYCLDQLIKEP-KRVDFETREILRIAAYQILKLDRIPDYAAVSEAVLLCGKV--NRRA 119

Query: 121 AKLVNSILRRVSRE-----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
              VN +LR + R                 + +A    IP          YGKE   AI 
Sbjct: 120 KGFVNGVLRNLIRNKTRLFDISNGSFRNEKEVLATRFSIPLPVVHYYFEAYGKEAAPAIL 179

Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPG--------F 218
                P  + + V       E  A KL A  L     +L      +  +          F
Sbjct: 180 AQMNVPAPLSVRVNTLKLSREDLAAKLQAEGLAVEVGQLSSDCLYLKGISASELVQSCWF 239

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275
            +G   +QD  A +  +L        +LD+CAAPGGKT  L   +    ++ A D+   R
Sbjct: 240 KDGWLTIQDQGAMLIAELLDPRPGERILDMCAAPGGKTTHLAQLMSDAGEIIARDIYPSR 299

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           L+ +     RL +        D       +  FD +L+DAPCS  G IRR P++ +    
Sbjct: 300 LQLIEDAAKRLGISNIKTELWDGIQPPKEEAAFDKILLDAPCSGYGVIRRKPEIRYRGTK 359

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           +D       QR LL  G+  ++  G +V++ C++D +++   + +V+R     +      
Sbjct: 360 EDRRAIRQTQRTLLNNGLDLLRSDGKLVYATCTIDPEENNRQIARVVRERSDVIAEAETE 419

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                          ++ G DGF+ + L +
Sbjct: 420 --------------------------RMTSPLTDGCDGFYMIRLIK 439


>gi|331007627|ref|ZP_08330769.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium IMCC1989]
 gi|330418567|gb|EGG93091.1| Ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium IMCC1989]
          Length = 442

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 110/466 (23%), Positives = 200/466 (42%), Gaps = 52/466 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    +AR+++  +L  + +++ SL          +    L ++++   + +     R+ 
Sbjct: 1   MIKKTSARIIAVKILLRLRQQKGSL------ASEFTLANELDEQEKRFAQELCYGLCRWY 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             ++  L  +L   L  K   +  LL + + Q+ ++ VA +A ++  V+ A   ++    
Sbjct: 55  FLLEFQLSDLLEKPLKNKDQDIYLLLLLGLYQLQFMRVAPHAAINETVDAAVFFRKP-WA 113

Query: 121 AKLVNSILRRVSREKI------------ELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
            KL+N +LR   RE +                  A     P+W +E +   +   +  AI
Sbjct: 114 KKLINGVLRSFQREHMSGDDSIVSANDINQKIPSADKISHPQWLQEAIVKAWP-AQSKAI 172

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAE 220
             A        L V     + +     ++                      + SLP FA+
Sbjct: 173 FSANNQHPPFTLRVNQQHASVSEYTQLLVDDRSFQTTSYSDVGLTLEKAVDVNSLPNFAQ 232

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL---DVSKRRLE 277
           G   VQD +A +   L     N  VLD C APGGKT  +      ++AL   D+ +RRL 
Sbjct: 233 GHSSVQDEAAQLAAPLLQLAPNQRVLDACCAPGGKTCHIGEMEPSLSALVGLDLEERRLV 292

Query: 278 KLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           +++ NL RL++   DII  D      +   +LFD +L+DAPCS+TG IRRHPD+   R  
Sbjct: 293 RVKENLQRLNI-NADIICGDGTAPDTWWDGQLFDRILLDAPCSATGVIRRHPDIKLLRQA 351

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            D+   A  Q +LL      +  GGI++++ CS+  Q++ +V+++ + +          +
Sbjct: 352 QDVSDVAALQLRLLNALWPLLADGGILLYATCSILPQENTQVIEQFIANH---------D 402

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +A    I+    ++     ++ P         + G DGF+   L +
Sbjct: 403 NAQHDVIEAEWGITQPYGRQLLPQ--------TKGHDGFYYARLIK 440


>gi|289667876|ref|ZP_06488951.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 436

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 198/453 (43%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L              RD+ LV AI    +R  P
Sbjct: 7   TAGVASRLAAARVLTAVFEQGRSLKTELAATLPGIG----DPRDRALVEAICFAVIRRRP 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D  L   L   LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 63  AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   AG    P W +++L   +  +   +  + A ++P+++ +
Sbjct: 122 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQLRADWSDRAEGIFTASAQMAPMWLRV 178

Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D   +  +L  + +      +            +  LPGFAEG   VQD SA   
Sbjct: 179 QRSRIDPAAYVARLAELDIRAHTDAVLPDAVRLHSAVPVSQLPGFAEGDVSVQDGSAQQV 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290
                   +  VLD CAAPGGK A       G ++TALDV  RRLE+++  L R    A 
Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERYPGLQLTALDVDARRLERVQQTLQRTVPNAQ 298

Query: 291 ---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                    D   +   + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 299 VALHAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V+  L+ +    +  PL + +  +       
Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQTQVEAFLQRT-ADAQAQPLGAQFGHAAGPG--- 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +        DGFF   L +
Sbjct: 415 -------------RQRFPGEQHCDGFFYALLLK 434


>gi|294648678|ref|ZP_06726140.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292825468|gb|EFF84209.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 435

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 196/454 (43%), Gaps = 40/454 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
              +N R      L  V +   SL  +L+         ++S+RD+ L   +    LR   
Sbjct: 9   AKHLNLRAQVIKTLLAV-QNGQSLASVLNQHI-----NIVSERDRGLYHELTLGCLRQWY 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + A+   +L   L     +L+  L + + QIL   +  +A +   V  AK+       +
Sbjct: 63  SLKAITLPLLTKPLD--NEALESCLYLGLYQILCTRIPVHAAISETVNAAKQ-LGFEPMS 119

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN+ILRRVSRE  E    +     +P W  +RL+  +  ++   I         + L 
Sbjct: 120 GLVNAILRRVSRETDEFQTALNNTHGLPSWLFKRLKKDWP-DQFDEICQNLKQVAPLTLR 178

Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
           V   +   + +   L+   +      L           +I  LPGF EG + VQD  A +
Sbjct: 179 VNERQVSRDEYLEILDEEQIDARPCMLSNVGIVLEQTGNITHLPGFEEGGFSVQDEHAQL 238

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              L   L++  V+D CAAPGGKTA      +  K+ ALD   +RL +L  N++RL L  
Sbjct: 239 CATLLPNLDDKVVVDACAAPGGKTAHILERYNPKKLIALDHDAKRLLRLSENIERLALDQ 298

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +I+  DA  +   +  D +++DAPCS+TG IRRHPD+   R + DI ++   Q+++L
Sbjct: 299 TEVEIVTADATTWQAPEAVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTVALQQQIL 358

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            Q    +K GG +++  CS+ K ++E+ +           E+          I+    + 
Sbjct: 359 QQMWQQLKVGGTLLYITCSILKAENEQQMATFFAEHADAKEVK---------IEANWGIE 409

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                ++ P             DGF+   + +  
Sbjct: 410 QTYGRQLLP--------TEHSGDGFYYCRIIKTA 435


>gi|114321773|ref|YP_743456.1| sun protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228167|gb|ABI57966.1| 16S rRNA m(5)C-967 methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 437

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 131/451 (29%), Positives = 194/451 (43%), Gaps = 40/451 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R  +   L  V+ +  SL   L       A + L  RD  L+  +    LR+  R+ A
Sbjct: 10  PVRQRAVQCLGQVLDQHQSLDQALPR-----AQQGLPPRDAALLAELCYGVLRWHDRLRA 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +   +L   L  K   LQ+LL   + Q+L   +  +A V   V  A R  +      L+N
Sbjct: 65  LAHRLLDKPLRGKDADLQRLLLCGLYQLLETRIPPHAAVAETVAVAPRLGKG-WARGLIN 123

Query: 126 SILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDL 180
           ++LRR  RE   L        A    +P W  + L   +  + + LA ++    P+ + +
Sbjct: 124 AVLRRAQREADRLLPALDADPATRYALPAWLLDTLRRDWPDRWQALAAANQQRPPMTLRV 183

Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233
            + ++  E     L+    P               P ++  LPGFA+G   VQD +A   
Sbjct: 184 DLTRWSREEALQALDDAGCPAQPSPWTPTAVTLARPAAVDELPGFADGRLSVQDEAAQWA 243

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
             L        VLD CAAPGGKT        G ++TALD+S+ RL ++R NL RL   A 
Sbjct: 244 APLLACRPGERVLDACAAPGGKTGHLLEHCPGIELTALDISEGRLGQVRANLQRLRREAR 303

Query: 292 DI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
            +         +   + +  +L+DAPCS TG IRRHPD+   R  DDI + A  Q +LL 
Sbjct: 304 CLAGDAARPETWWDGRPYQRILLDAPCSGTGVIRRHPDIRHLRRPDDIARLADGQGRLLE 363

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                + PGG +V++ CS+ K ++  VV   LR+ P    L                  P
Sbjct: 364 ALWGLLAPGGRLVYATCSVLKAENSRVVAHFLRAHPEAQWL------------------P 405

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            GW    P    +I   + GMDGF+   L R
Sbjct: 406 AGWPPGFPADDGQILAGNGGMDGFYYACLHR 436


>gi|111024114|ref|YP_707086.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii
           RHA1]
 gi|110823644|gb|ABG98928.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii
           RHA1]
          Length = 475

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 100/456 (21%), Positives = 163/456 (35%), Gaps = 39/456 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             RL +  +L  V  +      +L     +   R L  RD  L   +     R    +DA
Sbjct: 37  QPRLAARDVLRAVRERDAYANLVLPGLLRE---RRLDGRDAALATELAYGAARARGLLDA 93

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       +      L  +L++   Q+L   VA +A V  +V+  + +      A  VN
Sbjct: 94  VIADCAGRPIAEIDGPLLDVLQLGAYQLLRTRVAPHAAVATSVDLVRAEAGP-GKAGFVN 152

Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE--RVLAISDACI 173
           ++LRRVS                    A     P W  +   +  G +   +  +  A  
Sbjct: 153 AVLRRVSERSEAEWVERLAPADPVGRLAFEHAHPTWIAQVFADALGADAGELEDVLIADD 212

Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           +   + L  +      E  A      +       +         L    EG+  VQD  +
Sbjct: 213 ARPVVHLVARPGEISSEELALATGGEVGRYSPYAVYLDGGDPGLLDAVREGLAGVQDEGS 272

Query: 231 SIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284
            +  +               LDLCA PGGK A L   +G +   LD  +    +      
Sbjct: 273 QLVARALSLAPLDGPDAGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVEHRADLIRK 332

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  D+   D  D      +D +LVDAPC+  G +RR P+  W R   D+   A  Q
Sbjct: 333 TTKELPVDVHVADGRDPGLAGGYDRILVDAPCTGLGALRRRPEARWRRQPSDVAGLAKLQ 392

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL   +  V+PGG+++++ CS    ++  VV   +R       L  L++         
Sbjct: 393 RELLASAVELVRPGGVILYATCSPHLSETVAVVADAVRRYG----LTALDTRELVPGVPG 448

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   P   +++ P           G D  F  ALR+
Sbjct: 449 LGDGP--GVQLWPH--------RHGTDAMFMAALRK 474


>gi|327330430|gb|EGE72179.1| sun protein [Propionibacterium acnes HL097PA1]
          Length = 458

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 177/459 (38%), Gaps = 37/459 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR ++   L  V          L      +    L+ RD      +V+ T R   
Sbjct: 10  RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +++     +  + +  ++ +LR++  QIL + V   A V  +V+ A +    R   
Sbjct: 67  TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125

Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            LVN+I RR+S   +E              +A  ++ P W  +  ++  G + V     A
Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L V+  +       +          +   P +   +    EG   +QD  + 
Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244

Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282
           + +                LDLCA PGGK+A             TA+++ + R + +   
Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSFTAVELHEHRADLVSKA 304

Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L R       ++  D      PK+ F AVL D PCS  G++RR P+  W R   D+ +  
Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL+  ++  +PGG++ +  CS  + ++ +++     + P+ V   P   A   +I
Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A      I++ P           G D  F   LR+
Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451


>gi|52842799|ref|YP_096598.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629910|gb|AAU28651.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 427

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 199/457 (43%), Gaps = 50/457 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +N R  +  +L+ ++  R +L+ L+         + +S     + + I     R  
Sbjct: 1   MK--VNDRFNALKILTALIESRKNLSYLMS-------PQEISP----MTKEICYGFCRHY 47

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            R+ ++ D ++       +  +  +L + + Q+ Y++  DYAVV   V    + K++   
Sbjct: 48  FRLQSIADTLINKRPKDNELWI--VLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS-WA 104

Query: 121 AKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISPL 176
             LVN++LR   R K  +L+++A   +     P W  +RL+  +  +     +     P 
Sbjct: 105 KGLVNAVLRNFCRRKDHILEKLAAEPVFIYGQPNWLLQRLQKDWPNDWQFIAAANDRHPP 164

Query: 177 Y-IDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
             + + V K  ++ +   L    +      +        +P  +++LPGFA+G   VQDA
Sbjct: 165 MTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQDA 224

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDR 285
           +  +   L        VLD C APGGKT  ++          ALD+  +RL+++R NL+R
Sbjct: 225 APQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKEPGLASCVALDLDPQRLQRVRDNLNR 284

Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L A  +    ++   +     FD +L+DAPCS+TG IRRH D+   R  ++I   +  
Sbjct: 285 LDLQATVVQGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQV 344

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      + PGG++V++ CS+   ++E  + + +            +         
Sbjct: 345 QSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIAQFVAEH---------SDCQVSDGKW 395

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +         +I P            MDGFF   LR+
Sbjct: 396 SWGRWTGHGQQILPG--------EHSMDGFFYSVLRK 424


>gi|311894797|dbj|BAJ27205.1| hypothetical protein KSE_13770 [Kitasatospora setae KM-6054]
          Length = 477

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 101/471 (21%), Positives = 165/471 (35%), Gaps = 48/471 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR+V+   L  V  +      +L     ++  + + +RD  L   +V  TLR     DA
Sbjct: 21  PARIVAFRALRAVDERDAYANLILPSLLREAERKGMERRDAALATELVYGTLRGQGTYDA 80

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+   +   L      +  +L +   Q+L   +  +A V   VE A+    +   AK VN
Sbjct: 81  VIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPSHAAVSATVELARVVLGD-GRAKFVN 139

Query: 126 SILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER-------- 164
           ++LR++S + +                  +A +   P W    L +  G+ +        
Sbjct: 140 AVLRKISAQDLAGWVAQVAPPYEDDAEDHLAVVHSHPRWVVSSLWDALGRWQPAASGRQA 199

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFA 219
           +  + +A  +   + L  +    + A    A+     G                 +    
Sbjct: 200 MEQLLEADNARPEVTLVARPGRSSVAELRAALPEVEDGRWSPYALRLTDGGDPAGVDAVR 259

Query: 220 EGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL----DV 271
           E    VQD  +               +   LD CA PGGK A L    A   A     + 
Sbjct: 260 ENRAGVQDEGSQLVALALANAPLDGPDRLWLDGCAGPGGKAALLGAVAAARGAALVASEK 319

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
            + R   +   LD        I          +  FD VLVD PCS  G +RR P+  W 
Sbjct: 320 QQHRARLVARALDGNPGPYAVITADGTRGAWERGAFDRVLVDVPCSGLGALRRRPEARWR 379

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
           R  +DI      QR+LL   +   + GG+V ++ CS    ++  VV  VL      VE +
Sbjct: 380 RRPEDIAGFGPLQRELLRSALDAARVGGVVGYATCSPHLAETRAVVDDVL-RGREDVEWI 438

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                     D+         +++ P +         G D  +   LRR  
Sbjct: 439 DARPLLPGVPDLGEGPD----VQLWPHL--------HGTDAMYLALLRRTA 477


>gi|77410664|ref|ZP_00787024.1| sun protein [Streptococcus agalactiae CJB111]
 gi|77163379|gb|EAO74330.1| sun protein [Streptococcus agalactiae CJB111]
          Length = 440

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 123/451 (27%), Positives = 202/451 (44%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L  V  K       L+     S    LS +D+ LV  IV  T+     ++  
Sbjct: 9   ARGLALMTLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     + +  +  LL +S+ Q+LYLD + D+A+V+ AV  AK     +   KL+N
Sbjct: 66  LSHFI-VDRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLIN 124

Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--L 176
           ++LRRVS E            +R +    +P W  ++L + YG+ R LAI ++       
Sbjct: 125 AVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T     +T    LN          L     +  S   F +G+  +QD S+ +    
Sbjct: 185 SLRVTDLSQKQTIKETLNVRDSHIAETALVADSGNFSSTSFFQDGLITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                N  VLD C+APGGKT+ +   ++   VTALD+   +LE +  N  RL L      
Sbjct: 245 LKVSGNDQVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKT 304

Query: 294 IEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA    +Y  +  FD +LVDAPCS  G IRR PD+ + +   D       Q  +L  
Sbjct: 305 KKLDASKAHEYFLEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++ ++++ +V++K L + P        N    +       +   
Sbjct: 365 VCQTLRKGGIITYSTCTIFEEENFQVIEKFLENHP--------NFEQVELSHTQEDIVKR 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I I+P+            DGFF   ++R+
Sbjct: 417 GCISISPEQY--------HTDGFFIGQVKRI 439


>gi|87303174|ref|ZP_01085972.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701]
 gi|87282341|gb|EAQ74301.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701]
          Length = 447

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 123/468 (26%), Positives = 180/468 (38%), Gaps = 65/468 (13%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           G+ AR V+  +L  V          L+ E   S    L+  D+ L   +    +R    +
Sbjct: 10  GLEARRVAWRVLQAV-AAGAYTDLALERELRRSP---LAPADRGLATELACGAIRQRALL 65

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
           D  +D +   S  R+   L+ LL + + Q+L+   V   A V   VE AKRD   R  A 
Sbjct: 66  DGWIDALGKVSAERQPPPLRWLLHLGLYQLLFTARVPASAAVSTTVEIAKRDCLAR-LAP 124

Query: 123 LVNSILRRVSREKIELLQRIAGISIIP----------------EWFKERLENFYGKERVL 166
           +VN +LR   R +  L    A    +P                 W    L  +   E   
Sbjct: 125 VVNGLLRACLRRRQPLAPGAAPWEPLPLPSDPAASLALRGSLPPWLAAGLLEWLPPEGAE 184

Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-------LKELPESIVSLP 216
           A + A   P  +DL V       E     L A  +    +        L      + +LP
Sbjct: 185 AFALAANQPPALDLRVNHLRASREGVIEALAAAGVSAEPLPDLPWGLSLGGRSGDLRALP 244

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
           G+ EG W VQD +A +   L        +LD CAAPGGK+  L   I     V A+D S+
Sbjct: 245 GYDEGHWSVQDRTAQMIAPLLDPQPGERLLDACAAPGGKSTHLAELIGDAGTVVAVDRSE 304

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
            RL +LR N  RL L A + +  DA          FD +L+DAPCS  GT+ RHPD  W 
Sbjct: 305 GRLRRLRDNARRLGLNAIEPLTADAAITGAIGGPPFDRILLDAPCSGLGTLARHPDARWR 364

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                I      QR LL   +  + P G +V++ C++   ++  ++   L          
Sbjct: 365 ITPASISDLVALQRSLLEAMLPLLVPAGRLVYATCTVHPSENSALIASFLAQHSGW---- 420

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                                 R+     ++      G DGF+A  L+
Sbjct: 421 ----------------------RLL--SQQQHWPAPHGGDGFYAAVLQ 444


>gi|295130755|ref|YP_003581418.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes SK137]
 gi|291377004|gb|ADE00859.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes SK137]
          Length = 458

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 178/459 (38%), Gaps = 37/459 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR ++   L  V          L      +    L+ RD      +V+ T R   
Sbjct: 10  RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +++     +  + +  ++ +LR++  QIL + V   A V  +V+ A +    R   
Sbjct: 67  TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125

Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            LVN+I RR+S   +E              +A  ++ P W  +  ++  G + V     A
Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L V+  +       +          +   P +   +    EG   +QD  + 
Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244

Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282
           + +                LDLCA PGGK+A            +TA+++ + R + +   
Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304

Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L R       ++  D      PK+ F AVL D PCS  G++RR P+  W R   D+ +  
Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL+  ++  +PGG++ +  CS  + ++ +++     + P+ V   P   A   +I
Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDTP---AMLPNI 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A      I++ P           G D  F   LR+
Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451


>gi|227875402|ref|ZP_03993543.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris ATCC 35243]
 gi|269977344|ref|ZP_06184317.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris 28-1]
 gi|307700926|ref|ZP_07637951.1| putative ribosomal RNA small subunit methyltransferase B
           [Mobiluncus mulieris FB024-16]
 gi|227843956|gb|EEJ54124.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris ATCC 35243]
 gi|269934647|gb|EEZ91208.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris 28-1]
 gi|307613921|gb|EFN93165.1| putative ribosomal RNA small subunit methyltransferase B
           [Mobiluncus mulieris FB024-16]
          Length = 485

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 107/471 (22%), Positives = 180/471 (38%), Gaps = 48/471 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R  +   L  V +       +L  E        L++RD      +   TLR   R DA
Sbjct: 23  QPRDTAFWTLHRVAQDDAFANLVLPNEIERHH---LNRRDAAFATELAYGTLRLQGRYDA 79

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++  ++   L      +  +LR+   ++L + V  YA VD AV+ A+        A +VN
Sbjct: 80  IIARLVDRDLGELDADVLTVLRLGCHELLGMRVESYAAVDSAVDLARDRIST-GPAGMVN 138

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169
           ++LRRVS + +     I           A     PEW    L +         E +  + 
Sbjct: 139 AVLRRVSEKSLSEWLDIITENLSEEKALAVAFSYPEWMIWALRDSLVAAGRAAEELPGLL 198

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220
           +A  +P Y+ L  +  + T      A                  +         L     
Sbjct: 199 NAQNTPPYVALCARPSLCTADELATAAETYLDVDTRLGRLSPHAVVLSGGDPRRLRLVTR 258

Query: 221 GVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272
           G   V+D  +   V++           + +DLCA PGGKTA            V A +++
Sbjct: 259 GYAGVEDEGSQFLVEVLTAVEVPGVERTWVDLCAGPGGKTALLAALAKPKDVAVVANEIA 318

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLW 330
           + R+E +R ++ +       +I  D  ++  +     D VLVDAPCS  G +RR P+  W
Sbjct: 319 EHRVELVRDSV-KALAGNVTVIRGDGREFGSRHPGKADRVLVDAPCSGLGALRRRPEARW 377

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            ++  D  + +  Q  LL+ GI   K GG+V ++ CS    ++  +V  VL+       L
Sbjct: 378 RKNPADFSELSPLQADLLISGIEAAKAGGVVAYATCSPHLAETRALVNSVLQKRDDLEVL 437

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  A   ++D         ++++ PD            D  F   LR+ 
Sbjct: 438 DAVEIAKQVALDANHDFGSGPYLQLWPD--------RDHTDAMFLALLRKK 480


>gi|78049480|ref|YP_365655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78037910|emb|CAJ25655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 436

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 125/453 (27%), Positives = 202/453 (44%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L              RD+ LV AI    +R  P
Sbjct: 7   TAGVASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D  L   L  +LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 63  AYDVALRQWLERALPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   A  +  P W +++L   +  +   +  + A ++P+++ +
Sbjct: 122 GMVNAILRRAQREGFPAV---ADDAGWPSWLRKQLRADWGDRAEAIFTASAQMAPMWLRV 178

Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D   +  +L  + +      +            +  LPGFAEG   VQD SA   
Sbjct: 179 QRSRTDPARYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQDGSAQQV 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                   +  VLD CAAPGGK A       G ++TALDV  RRLE+++  L R    A+
Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLTALDVDARRLERVQQTLQRTVPDAQ 298

Query: 292 DIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             ++             + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 299 VALQAADAADPDAWWDGRPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V+  L+ +P   +  PL + +  +       
Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQRTP-DAQAQPLGAQFGHAAGAG--- 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         +     +  DGFF   L +
Sbjct: 415 -------------RQRFPGEAHCDGFFYALLLK 434


>gi|22536500|ref|NP_687351.1| sun protein [Streptococcus agalactiae 2603V/R]
 gi|25010379|ref|NP_734774.1| sun protein [Streptococcus agalactiae NEM316]
 gi|76787603|ref|YP_329039.1| sun protein [Streptococcus agalactiae A909]
 gi|77404948|ref|ZP_00782049.1| sun protein [Streptococcus agalactiae H36B]
 gi|22533332|gb|AAM99223.1|AE014206_3 sun protein [Streptococcus agalactiae 2603V/R]
 gi|23094731|emb|CAD45950.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562660|gb|ABA45244.1| sun protein [Streptococcus agalactiae A909]
 gi|77176387|gb|EAO79155.1| sun protein [Streptococcus agalactiae H36B]
          Length = 440

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 123/451 (27%), Positives = 202/451 (44%), Gaps = 36/451 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L  V  K       L+     S    LS +D+ LV  IV  T+     ++  
Sbjct: 9   ARGLALMTLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     + +  +  LL +S+ Q+LYLD + D+A+V+ AV  AK     +   KL+N
Sbjct: 66  LSHFI-VDRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLIN 124

Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--L 176
           ++LRRVS E            +R +    +P W  ++L + YG+ R LAI ++       
Sbjct: 125 AVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            + +T     +T    LN          L     +  S   F +G+  +QD S+ +    
Sbjct: 185 SLRVTDLSQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                N  VLD C+APGGKT+ +   ++   VTALD+   +LE +  N  RL L      
Sbjct: 245 LKVSGNDQVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKT 304

Query: 294 IEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            ++DA    +Y  +  FD +LVDAPCS  G IRR PD+ + +   D       Q  +L  
Sbjct: 305 KKLDASKAHEYFLEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSS 364

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++ GGI+ +S C++ ++++ +V++K L + P        N    +       +   
Sbjct: 365 VCQTLRKGGIITYSTCTIFEEENFQVIEKFLENHP--------NFEQVELSHTQEDIVKR 416

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G I I+P+            DGFF   ++R+
Sbjct: 417 GCISISPEQY--------HTDGFFIGQVKRI 439


>gi|306832887|ref|ZP_07466020.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           bovis ATCC 700338]
 gi|304424962|gb|EFM28095.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           bovis ATCC 700338]
          Length = 440

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 116/452 (25%), Positives = 195/452 (43%), Gaps = 36/452 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++  +L  V          L+ E   +    LS +D+ LV  IV  T+     ++ 
Sbjct: 8   QARGLALLVLENVFEDGAYSNIALNQELSHT---TLSPKDKPLVTEIVYGTVARKITLEW 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +  + +  LL +S+ Q+LYLD +  +AVV+ AV  AK     +   K V
Sbjct: 65  YLAHYI-KDRDKLDFWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAKNRGNKKGAEKFV 123

Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175
           N++LRR                +R + +  +P W  ++L + +G+ER +AI  +    + 
Sbjct: 124 NAVLRRFTEEELPNPETIKRKNKRYSVLYSLPVWLVKKLIDQFGEERAVAIMQSLFVRNK 183

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             I +T    +        A       + L +          FA G   +QD S+ +   
Sbjct: 184 ASIRVTNLDKLAEIKAATGAEQSILSPVGLVKTSGHFAGTDYFANGNITIQDESSQLVAP 243

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292
                 N  +LD CAAPGGKT  +   +    +TALD+   +L  +  N  RLH+     
Sbjct: 244 TLNIQGNEDILDACAAPGGKTTHMASYLKEGHITALDLYDHKLTLVMDNAKRLHVADKIS 303

Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +MD     ++     FD +LVDAPCS  G IRR PD+ + ++  D       Q ++L 
Sbjct: 304 TQKMDATTVHEHFAPDSFDKILVDAPCSGIGLIRRKPDIKYNKENQDFSALQEIQLQILD 363

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                ++ GGI+ +S C++  +++ +V+ K L + P        N    K       +  
Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIVR 415

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +G I ITP+  +         DGFF   ++R+
Sbjct: 416 DGCITITPEQYQ--------TDGFFIGQVKRI 439


>gi|50842676|ref|YP_055903.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202]
 gi|289428602|ref|ZP_06430286.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes J165]
 gi|50840278|gb|AAT82945.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202]
 gi|289158296|gb|EFD06515.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes J165]
 gi|313764281|gb|EFS35645.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL013PA1]
 gi|313772001|gb|EFS37967.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL074PA1]
 gi|313802083|gb|EFS43317.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL110PA2]
 gi|313807694|gb|EFS46181.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL087PA2]
 gi|313810201|gb|EFS47922.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL083PA1]
 gi|313812771|gb|EFS50485.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL025PA1]
 gi|313816188|gb|EFS53902.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL059PA1]
 gi|313818731|gb|EFS56445.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL046PA2]
 gi|313820501|gb|EFS58215.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL036PA1]
 gi|313822693|gb|EFS60407.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL036PA2]
 gi|313825373|gb|EFS63087.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL063PA1]
 gi|313827669|gb|EFS65383.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL063PA2]
 gi|313830532|gb|EFS68246.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL007PA1]
 gi|313833568|gb|EFS71282.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL056PA1]
 gi|313838904|gb|EFS76618.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL086PA1]
 gi|314915270|gb|EFS79101.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL005PA4]
 gi|314918180|gb|EFS82011.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL050PA1]
 gi|314920256|gb|EFS84087.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL050PA3]
 gi|314925043|gb|EFS88874.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL036PA3]
 gi|314931779|gb|EFS95610.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL067PA1]
 gi|314955581|gb|EFS99982.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL027PA1]
 gi|314958076|gb|EFT02179.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL002PA1]
 gi|314960353|gb|EFT04455.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL002PA2]
 gi|314962623|gb|EFT06723.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL082PA1]
 gi|314967512|gb|EFT11611.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL037PA1]
 gi|314973532|gb|EFT17628.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL053PA1]
 gi|314976212|gb|EFT20307.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL045PA1]
 gi|314978627|gb|EFT22721.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL072PA2]
 gi|314983766|gb|EFT27858.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL005PA1]
 gi|314989757|gb|EFT33848.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL005PA3]
 gi|315077839|gb|EFT49890.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL053PA2]
 gi|315080464|gb|EFT52440.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL078PA1]
 gi|315084135|gb|EFT56111.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL027PA2]
 gi|315085478|gb|EFT57454.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL002PA3]
 gi|315088465|gb|EFT60441.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL072PA1]
 gi|315096079|gb|EFT68055.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL038PA1]
 gi|315098708|gb|EFT70684.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL059PA2]
 gi|315101523|gb|EFT73499.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL046PA1]
 gi|315105750|gb|EFT77726.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL030PA1]
 gi|315108670|gb|EFT80646.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL030PA2]
 gi|327326359|gb|EGE68149.1| sun protein [Propionibacterium acnes HL096PA2]
 gi|327331766|gb|EGE73503.1| sun protein [Propionibacterium acnes HL096PA3]
 gi|327443543|gb|EGE90197.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL013PA2]
 gi|327445747|gb|EGE92401.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL043PA2]
 gi|327448270|gb|EGE94924.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL043PA1]
 gi|327450608|gb|EGE97262.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL087PA3]
 gi|327454053|gb|EGF00708.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL083PA2]
 gi|328753311|gb|EGF66927.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL025PA2]
 gi|328754026|gb|EGF67642.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL087PA1]
 gi|328754754|gb|EGF68370.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL020PA1]
 gi|328760679|gb|EGF74245.1| sun protein [Propionibacterium acnes HL099PA1]
 gi|332675599|gb|AEE72415.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes 266]
          Length = 458

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 178/459 (38%), Gaps = 37/459 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR ++   L  V          L      +    L+ RD      +V+ T R   
Sbjct: 10  RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +++     +  + +  ++ +LR++  QIL + V   A V  +V+ A +    R   
Sbjct: 67  TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125

Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            LVN+I RR+S   +E              +A  ++ P W  +  ++  G + V     A
Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L V+  +       +          +   P +   +    EG   +QD  + 
Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244

Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282
           + +                LDLCA PGGK+A            +TA+++ + R + +   
Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304

Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L R       ++  D      PK+ F AVL D PCS  G++RR P+  W R   D+ +  
Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL+  ++  +PGG++ +  CS  + ++ +++     + P+ V   P   A   +I
Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A      I++ P           G D  F   LR+
Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451


>gi|289425301|ref|ZP_06427078.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes SK187]
 gi|289154279|gb|EFD02967.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes SK187]
          Length = 458

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 178/459 (38%), Gaps = 37/459 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR ++   L  V          L      +    L+ RD      +V+ T R   
Sbjct: 10  RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +++     +  + +  ++ +LR++  QIL + V   A V  +V+ A +    R   
Sbjct: 67  TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125

Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            LVN+I RR+S   +E              +A  ++ P W  +  ++  G + V     A
Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L V+  +       +          +   P +   +    EG   +QD  + 
Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGIVR-PGNPSDVAAVREGRAGIQDEGSQ 244

Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282
           + +                LDLCA PGGK+A            +TA+++ + R + +   
Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304

Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L R       ++  D      PK+ F AVL D PCS  G++RR P+  W R   D+ +  
Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL+  ++  +PGG++ +  CS  + ++ +++     + P+ V   P   A   +I
Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A      I++ P           G D  F   LR+
Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451


>gi|297559831|ref|YP_003678805.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844279|gb|ADH66299.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 489

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 106/469 (22%), Positives = 177/469 (37%), Gaps = 46/469 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR V+  +L  V ++      LL     +   R +S RD  L   +   TLR    
Sbjct: 32  PRDPARRVAYDVLRAVGQRDAYANLLLPALLSE---RGISGRDAALATELTYGTLRLQGT 88

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
            DA+L+  +  +L         LLR+   Q+L   +  +A V   V+ A+R   + H  +
Sbjct: 89  YDAILEACVDRTLASVDTEALPLLRLGAHQLLSTKIPPHAAVSATVDLARRVVGH-HRGR 147

Query: 123 LVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERL------ENFYGKE 163
            VN++LR+VS   ++                 ++ +   P W  + L       +  G  
Sbjct: 148 FVNAVLRKVSARDLDAWTAVVAPDRATDPSGYLSVVHSHPRWMVKELARALGERSANGLV 207

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVSLPGFAEG 221
               +  A      + L  K    T A  +   A                  ++    + 
Sbjct: 208 ETERLLAAHNERPRVTLVAKPGRATVADLVAAGAEEARYSPFAAYLPEGDPAAIREVHQN 267

Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSK 273
              VQD ++        ++    ++   LD+CA PGGK     +      A++ A +V  
Sbjct: 268 RAAVQDEASQLVALALTRVDAHGDDARWLDMCAGPGGKAGLLASLAGQRDARLLAAEVQP 327

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            R   +   + R    A  ++  D          FD VLVDAPC+  G +RR P+  W R
Sbjct: 328 ARAGLVAGAVRRSPRDAGRVVVADGTRPAWRPGAFDRVLVDAPCTGLGALRRRPESRWRR 387

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                 + A  Q  LL   +  V+ GG+V +  CS    +++ +V++VL        L  
Sbjct: 388 TEGSAAELAPLQHDLLTSAVEAVRLGGVVAYVTCSPHLDETDGIVRRVLSERDD---LTL 444

Query: 393 LNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L +A +      +A  PEG +++  P +         G D  F   LRR
Sbjct: 445 LRAADYLDGVPDLAAGPEGRYVQFWPHV--------HGTDAMFLALLRR 485


>gi|306818715|ref|ZP_07452437.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris ATCC 35239]
 gi|304648401|gb|EFM45704.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
           mulieris ATCC 35239]
          Length = 485

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 107/471 (22%), Positives = 180/471 (38%), Gaps = 48/471 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R  +   L  V +       +L  E        L++RD      +   TLR   R DA
Sbjct: 23  QPRDTAFWTLHRVAQDDAFANLVLPNEIERHH---LNRRDAAFATELAYGTLRLQGRYDA 79

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++  ++   L      +  +LR+   ++L + V  YA VD AV+ A+        A +VN
Sbjct: 80  IIARLVDRDLGELDADVLTVLRLGCHELLGMRVESYAAVDSAVDLARDRIST-GPAGMVN 138

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169
           ++LRRVS + +     I           A     PEW    L +         E +  + 
Sbjct: 139 AVLRRVSEKSLSEWLDIITENLSEEKALAVAFSYPEWMIWALRDSLVAAGRAAEELPGLL 198

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220
           +A  +P Y+ L  +  + T      A                  +         L     
Sbjct: 199 NAQNTPPYVALCARPSLCTADELATAAETYLDVDTRLGRLSPHAVVLSGGDPRRLRLVTR 258

Query: 221 GVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272
           G   V+D  +   V++           + +DLCA PGGKTA            V A +++
Sbjct: 259 GYAGVEDEGSQFLVEVLTAVEVPGVERTWVDLCAGPGGKTALLAALAKPKDVAVVANEIA 318

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLW 330
           + R+E +R ++ +       +I  D  ++  +     D VLVDAPCS  G +RR P+  W
Sbjct: 319 EHRVELVRDSV-KALAGNVTVIRGDGREFGSRHPGKADRVLVDAPCSGLGALRRRPEARW 377

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            ++  D  + +  Q  LL+ GI   K GG+V ++ CS    ++  +V  VL+       L
Sbjct: 378 RKNPADFSELSPLQADLLISGIEAAKAGGVVAYATCSPHLAETRALVNSVLQKRDDLEVL 437

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  A   ++D         ++++ PD            D  F   LR+ 
Sbjct: 438 DAVEIAKQVALDANHDFGSGSYLQLWPD--------RDHTDAMFLALLRKK 480


>gi|126643464|ref|YP_001086448.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
           baumannii ATCC 17978]
          Length = 405

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 110/421 (26%), Positives = 197/421 (46%), Gaps = 34/421 (8%)

Query: 35  DSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL 94
           ++    +++RD+ L   +V  TLR    + ++   +L   L     +++  L V + Q+L
Sbjct: 6   NTQLNQVAERDRALFHELVLGTLRQWFALKSISLPLLSKPLN--NETVETCLYVGLYQVL 63

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
              +A +A +   V+ A +       + +VN+ILRR +RE  +  Q +     +P W  +
Sbjct: 64  CTRIAAHAAISETVD-ATKQLGFPALSGIVNAILRRATRETEDFEQGLQQAHGLPSWLFK 122

Query: 155 RLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVMLPTGGI------RL 205
           RL+  +G E+  A+  +      + L V       + +  KL ++ +            +
Sbjct: 123 RLKKDWG-EQTEALCQSLKQVAPLTLRVNQRHIGRDAYLAKLQSLDIQARACLFSEAGIV 181

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSG 263
            E    I  LPGF +G + VQD  A +   L   LNN +V+D CAAPGGKTA        
Sbjct: 182 LEQSVQITQLPGFEQGWFSVQDEHAQLCATLLPDLNNKTVIDACAAPGGKTAHLLEKFKP 241

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
           A++ A+D    RL ++  NL+RL L     +I+  DA  + P +  D +++DAPCS+TG 
Sbjct: 242 AQLIAIDQDPSRLVRVTENLNRLALDQSHTEILAADATKWNPVQPVDCIVLDAPCSATGV 301

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           IRRHPD+   R + DI ++   Q+++L      +K GG +++  CS+ K ++E+ +    
Sbjct: 302 IRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCSILKSENEQQMINFF 361

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              P   E+          I+    +      ++ P+            DGF+   ++++
Sbjct: 362 TEHPDAKEVK---------IEADWGIEQVHGRQLLPEAQSG--------DGFYYCKIQKI 404

Query: 442 I 442
            
Sbjct: 405 A 405


>gi|306830710|ref|ZP_07463875.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427218|gb|EFM30325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 440

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 193/452 (42%), Gaps = 36/452 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++  +L  V          L+ E   +    LS +D+ LV  IV  T+     ++ 
Sbjct: 8   QARGLALLVLENVFEDGAYSNIALNQELSHT---TLSPKDKSLVTEIVYGTVARKITLEW 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +    +  LL +S+ Q+LYLD +  +AVV+ AV  AK     +   K V
Sbjct: 65  YLAHYI-KDRDKLDSWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAKNRGNKKGAEKFV 123

Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175
           N++LRR                +R + +  +P W  ++L + +G+ER  AI  +    + 
Sbjct: 124 NAVLRRFTKEELPNPETIKRKNKRYSVLYSLPVWLVKKLIDQFGEERAAAIMQSLFVRNK 183

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             I +T    +        A       + L +          FA G   +QD S+ +   
Sbjct: 184 ASIRVTDPDKLAEIKAATGAEQSILSPVGLVKTSGHFAGTDYFANGDITIQDESSQLVAP 243

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292
                 N  +LD CAAPGGKT  +   +    +TALD+   +L  +  N  RLH+     
Sbjct: 244 TLDIQGNEDILDACAAPGGKTTHMASYLKKGHITALDLYDHKLTLVMDNAKRLHVADKIS 303

Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +MD     ++     FD +LVDAPCS  G IRR PDV + ++  D       Q ++L 
Sbjct: 304 TQKMDATTVHEHFAPDSFDKILVDAPCSGIGLIRRKPDVKYNKENQDFSALQEIQLQILD 363

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                ++ GGI+ +S C++  +++ +V+ K L + P        N    K       +  
Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIVR 415

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +G I ITP+  +         DGFF   ++R+
Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439


>gi|283457829|ref|YP_003362427.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18]
 gi|283133842|dbj|BAI64607.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18]
          Length = 697

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 103/506 (20%), Positives = 175/506 (34%), Gaps = 84/506 (16%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR     +L  V         +L           L  RD      +   TLR     DA+
Sbjct: 203 ARATVFEVLRSVAESDAYANLVLPKAIRSHR---LDHRDAGFATELTYGTLRHQGTYDAI 259

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   +   L +   +   +LR+ V Q+L + V  +A ++ +V  A+        A  +N+
Sbjct: 260 LRHCVDRPLEKVGTTTLIVLRMGVHQLLNMRVPAHAALNQSVSLAREKIG-AGPASFINA 318

Query: 127 ILRRVSREKIELLQ------------RIAGISIIPEWFKERLENFYGKE-----RVLAIS 169
           +LRRVS    E               R+A ++  P W    +             +  + 
Sbjct: 319 VLRRVSERTPEEWYELIIKDAKDDTERMALLASHPAWIVRSMRQALVAHGRPASEIEQLL 378

Query: 170 DACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +A      ++L     + +     +  AV               +  L    EG    QD
Sbjct: 379 EADNLAPVVNLVALPGLGSLDEAREQGAVDGELVEGSALYTSGDLARLESVREGTVRAQD 438

Query: 228 ASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKL 279
           A + +  +          + + LDLCA PGGK A      I  GA + A + +  R + +
Sbjct: 439 AGSQLVARALAAAPLDGTDTAWLDLCAGPGGKAALLGALGIQRGASLVANEAAPHRAQLV 498

Query: 280 RCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAPCSSTGTIRR 324
             ++  L   +  ++  D                    P +LFD V+VD PCS  G +RR
Sbjct: 499 ESSMRPLPEDSYTVLTGDGRQIRETLRKNASDLPESIEPGQLFDRVMVDVPCSGLGALRR 558

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P+  W +   DI +    QR+LL   I   +PGG++ +  CS    +++ +V +VL S 
Sbjct: 559 RPEARWRKSPRDIAELLPLQRQLLDAAIEATRPGGVIAYVTCSPHAAETQNIVAEVLESG 618

Query: 385 PIPV-------------------ELVPLNSAYWKSIDMAMALSPEG-----------WIR 414
            + +                   E V + +              +G             +
Sbjct: 619 AVSLLDSAAALREVALHTEGANGEPVSVLAGEKDPGHTPEIKVKKGAPVVKASENPTTAQ 678

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + P +         G D  F   LR+
Sbjct: 679 LWPHV--------HGTDAMFLALLRK 696


>gi|255325951|ref|ZP_05367041.1| ribosomal RNA small subunit methyltransferase B [Rothia
           mucilaginosa ATCC 25296]
 gi|255296966|gb|EET76293.1| ribosomal RNA small subunit methyltransferase B [Rothia
           mucilaginosa ATCC 25296]
          Length = 659

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 101/506 (19%), Positives = 175/506 (34%), Gaps = 84/506 (16%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR     +L  V         +L           L  RD      +   TLR     DA+
Sbjct: 165 ARATVFDVLRSVAESDAYANLVLPKAIRSHR---LDHRDAGFATELTYGTLRHQGTYDAI 221

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   +   + +   +   +LR+ V Q+L + V  +A ++ +V  A+        A  +N+
Sbjct: 222 LSRCVDRPIEKVGTTTLIVLRMGVHQLLNMRVPAHAALNQSVSLAREKIG-AGPASFINA 280

Query: 127 ILRRVSREKIELLQ------------RIAGISIIPEWFKERLENFYGKE-----RVLAIS 169
           +LRRVS    E               R+A ++  P W    +             +  + 
Sbjct: 281 VLRRVSERTPEEWYELIIEDAKDDTERMALLASHPGWIVRSMRQALVAHGRPASEIEQLL 340

Query: 170 DACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +A      ++L     + +     +  A+               +  L    EG    QD
Sbjct: 341 EADNLAPVVNLVALPGLGSLEEAREQGAIDGELVEGSALYASGDLARLESVHEGTVRAQD 400

Query: 228 ASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKL 279
           A + +  +          + + LDLCA PGGK A      I  GA + A + +  R + +
Sbjct: 401 AGSQLVARALAAAPLDGTDTAWLDLCAGPGGKAALLGALGIQRGASLVANEAAPHRAQLV 460

Query: 280 RCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAPCSSTGTIRR 324
             ++  L   +  ++  D                    P +LFD V+VD PCS  G +RR
Sbjct: 461 ESSMRPLPEDSYTVLTGDGRQIRETLRKNASDLPGSIEPGQLFDRVMVDVPCSGLGALRR 520

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P+  W +   DI +    QR+LL   I   +PGG++ +  CS    +++ +V +VL S 
Sbjct: 521 RPEARWRKSPRDIAELLPLQRQLLDAAIEATRPGGVIAYVTCSPHAAETQNIVAEVLESG 580

Query: 385 PIPV-------------------ELVPLNSAYWKSIDMAMALSPEG-----------WIR 414
            + +                   E V + +              +G             +
Sbjct: 581 AVSLLDSAAALREVALHTEGANGEPVSVLAGEKDPGHTPEIKVKKGAPVVKASENPTTAQ 640

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + P +         G D  F   LR+
Sbjct: 641 LWPHV--------HGTDAMFLALLRK 658


>gi|297571430|ref|YP_003697204.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931777|gb|ADH92585.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 484

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 96/481 (19%), Positives = 184/481 (38%), Gaps = 61/481 (12%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           ARLV   +L  V          L  E   +    L+++D      +   TLR L R DA+
Sbjct: 19  ARLVVFDVLMAVEEDGAYANLALPREIRRAR---LNKQDASYATNLCYGTLRLLGRWDAI 75

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L        +     +++ LLR+   Q+L L    +A ++  V  A R++ ++  A  +N
Sbjct: 76  LAHCTNGRPIAELDTAVKVLLRMGAHQLLELKTPPHAAINETVVIA-RNELSQGIAGFIN 134

Query: 126 SILRRVSREKIELLQRI---------------AGISIIPEWFKERLENF-----YGKERV 165
           ++LRRVS       Q+                +     P+W    L+          + +
Sbjct: 135 AVLRRVSERTTAQWQQQLKEDAGGKVNSVAFLSTWYSHPQWVVRALDKALQYHGREHKDI 194

Query: 166 LAISDACISPLYIDLTVK-FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFA 219
           L +  +  +P  + L  +   +      +    + +    L +            +    
Sbjct: 195 LHVLRSDNTPASVSLVARGISVADLREDIRRGHMHSEEGELVDSAVLLHGGDPSRVFAIK 254

Query: 220 EGVWWVQDASASIPVQLFGTLNNLS----VLDLCAAPGGKT----AQLIVSGAKVTALDV 271
           + +  VQD  + +  +        +     LD+CA PGGKT    +     G+++ A ++
Sbjct: 255 DRLAGVQDEGSQLVARTLAAAQLETDDDLWLDMCAGPGGKTATLASIADQRGSRIHANEL 314

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIR 323
              RLE +  ++        D+ E D  D+         P   +  +L+DAPC+  G +R
Sbjct: 315 HPHRLELVLDSIQPW-ADIVDVREGDGRDFGDSTQEGVIPPNGYARILIDAPCTGIGALR 373

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R P+  W ++  D +  A  Q +LL  G + ++PGG++ +S CS    ++ E++   +  
Sbjct: 374 RRPEARWRKEAGDALDLAKLQAELLEAGWNALRPGGVLGYSTCSPYLAETSEIINAFVEK 433

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            P  + L     A   +          G +++ PD+           D  +      + +
Sbjct: 434 HPEAIRLN--TPAIASTQARVDIAGENGELQLWPDL--------HNSDAMYLAL---ISK 480

Query: 444 P 444
           P
Sbjct: 481 P 481


>gi|298346829|ref|YP_003719516.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236890|gb|ADI68022.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC
           43063]
          Length = 470

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 103/465 (22%), Positives = 176/465 (37%), Gaps = 47/465 (10%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75
             V +       +L      +    L +RD      +V  TLR   R DA++  +    +
Sbjct: 2   RRVDQDHAYANLVLPGLIERAR---LHRRDAAFATELVYGTLRLQGRYDAIIGLLSDRDI 58

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
                 L  +LR+ + QIL + V DYA VD  V+ A RD+ +   A +VN++LR+V+   
Sbjct: 59  AALDSELVTVLRMGIHQILQMRVEDYAAVDTMVDLA-RDRLSAGPAGMVNAVLRKVTEHD 117

Query: 136 IELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAISDACISPLYID 179
           +                 +     PEW    L +           +  +  A   P Y+ 
Sbjct: 118 LSYWLDAITSGLTGEKALSRAFSYPEWIVWALRDALVATGRDAGELPGLLHAQNRPAYVT 177

Query: 180 LTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASA 230
           L  +  + +      A                  +         L     G+  V+D  +
Sbjct: 178 LCARPGLISADELATAAETYLDADTRLGELSDCAVVLSGGDPRRLRAVERGLAGVEDEGS 237

Query: 231 SIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282
            +  ++           + +DLCA PGGKTA            V A +VS  R E +R +
Sbjct: 238 QLVAKVLAAAPVTGVERTWVDLCAGPGGKTALLAGLARSRDVSVIANEVSPHRAELVRDS 297

Query: 283 LDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
                     +++ D  D+        D VLVDAPCS  G++RR P+  W +   D+   
Sbjct: 298 TKAFTDQIVQVLQGDGRDFGGLHPGKADRVLVDAPCSGLGSLRRRPEARWNKSATDLKDL 357

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q+ LL   +  VKPGG+V ++ CS    ++ +VV+  +++      L     A    
Sbjct: 358 TALQQDLLRSALETVKPGGVVGYATCSPHLAETRQVVETTVKNRADLRVLDAPAVAREII 417

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           ++    L P  ++++ PD          G D  F   +++    +
Sbjct: 418 VNSEHDLGPGPYLQLWPD--------RDGTDAMFLALIQKKSPTE 454


>gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
           marinus str. MIT 9202]
          Length = 438

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 106/413 (25%), Positives = 176/413 (42%), Gaps = 33/413 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G   R  +  +L  V          L+    +  F  L   D   +  +    +R+ 
Sbjct: 1   MSIGYLQRKAAWEILLKV-SSGDFSDHALEKVLKNYQFNPL---DIAFITELSFGCIRYR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D   D     +  ++   L+ LL + + Q+L +D +   A +   VE AK+   N  
Sbjct: 57  KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFSAAISTTVEVAKKTDLN-G 115

Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170
            A  VN+ILR  SR+  + +           I+ +   P W  + L  + G      I  
Sbjct: 116 LAGTVNAILRNASRKLEQKIFPELSSDRKERISYLESFPLWLVKDLYKWVGNSEGENIIK 175

Query: 171 ACISPLYIDLTVKFDIETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAE 220
           A      IDL +        + L            +     GI LK  P SI +LPG+++
Sbjct: 176 AFNKKPSIDLRINQLKTNLDNFLKVLHKNNIDAEIIKDLHNGITLKSNPRSIKNLPGYSD 235

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277
           G+W +QD S+     L        +LD CAAPG K+  L         + A+D S +RL+
Sbjct: 236 GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEILAVDRSAKRLK 295

Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            L+ NL+RL+L + + ++ DA      +      FD +L+DAPCS  GT+ R+PD  W+ 
Sbjct: 296 ILQSNLERLNLKSVNTLKTDATSLIELNPNFISYFDKILIDAPCSGIGTLSRNPDSRWSL 355

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
             + I      Q KLL      +K  G +V+S C++   D+  ++++ +  + 
Sbjct: 356 SKEKIKSLTLLQEKLLESIFPLLKKDGTLVYSTCTICPDDNNLLIKRFIEKNK 408


>gi|254282952|ref|ZP_04957920.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium NOR51-B]
 gi|219679155|gb|EED35504.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium NOR51-B]
          Length = 416

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 179/435 (41%), Gaps = 38/435 (8%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
              SL  +L           +    + LV  +V  TLR  P ++ +   +L   L +K  
Sbjct: 3   NGRSLAAVLPSHL-----ASVDSGQRPLVMELVYSTLREWPLLEGISRQLLRKPLRKKDA 57

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140
            +  L+ + + Q+    +A +A V   V   +  ++N     LVN +LR   R+  EL+ 
Sbjct: 58  DVHALVLLGLQQLRGTRIAHHAAVSETVAVCRELRKN-WATGLVNGVLRTYQRQTAELID 116

Query: 141 R--IAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK-FDIETWAHKLNAV 196
               A  + +PEW  ++L   +        + +   P   + +  +    E +  +L+A 
Sbjct: 117 NLSPAEKAALPEWMYQQLAKEWPHHLTKIAAASSSRPPMSLRINTRLCSPEEYKQRLHAE 176

Query: 197 MLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
            +      L            + S+PGF  G   VQD SA +   L       +VLD CA
Sbjct: 177 GIAFSADGLSNTAVTLARPIDVESVPGFTAGQISVQDVSAQLAAILLDAKPGETVLDACA 236

Query: 251 APGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK 305
           APGGK+  +     ++    A D+  +RLEK+  N DRL L      +      D     
Sbjct: 237 APGGKSCHIAERQPELKTLIAADIDAKRLEKVIANRDRLGLGFDCIAMDAAHPGDELGVG 296

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FDA++ D PCS+TG +RR+PD+   R   DI   A  Q  +       +KPGG +++  
Sbjct: 297 RFDAIVADVPCSATGVLRRNPDIKIHRGKTDIRHFAQQQTDITHGLWPLLKPGGRLLYVT 356

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+ + +++  V+  L                 +  D  + ++ E   ++ P        
Sbjct: 357 CSILRAENDAQVEAFLEHHEDAAV---------EPFDTEVGIATEYGQQVLP-------- 399

Query: 426 VSSGMDGFFAVALRR 440
            + G DG +   +RR
Sbjct: 400 AAEGGDGLYFSLIRR 414


>gi|154508791|ref|ZP_02044433.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798425|gb|EDN80845.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC
           17982]
          Length = 490

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 171/475 (36%), Gaps = 45/475 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRIDA 65
            R ++  +L  V  +      +L      +      S RD      +V+ TLR + R+D 
Sbjct: 19  PRRIAYDVLHEVETQGAFTNIILPKALRQARRDGHFSDRDAAFTSELVHGTLRAIGRLDW 78

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-------- 117
           V+   +   L         +LR+   Q+L + V D+A V   V+ A+    +        
Sbjct: 79  VISRHIDRPLADLDPRALVVLRMGAHQLLDMRVPDHAAVSATVDVAREHLTDGPVRFVNA 138

Query: 118 --RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISD 170
             R   +   S          +  Q +      P W      +      Y ++ +L +  
Sbjct: 139 VLRSITREDPSEREAAMDAIADEDQALGVRYSHPAWMVTAFRDALKAHGYPEDELLDVLV 198

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLP---------TGGIRLKELPESIVSLPGFAEG 221
           A      + L  +  + +     +                   +         LP   +G
Sbjct: 199 ADNEVPTVTLVARPSLMSVDELADEAEDILDTRVALGAVSPYAVLLESGDPARLPSIRDG 258

Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVS 272
               QD  + +   +  +      N+   LDLCA P              GA+VTA +V 
Sbjct: 259 RAGAQDEGSQLAALIAASAPLEGDNDERWLDLCAGPGGKAALLAGLAAGVGARVTANEVH 318

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDY------CPKKLFDAVLVDAPCSSTGTIRRHP 326
             R   +          + +++  D   +           FD V+VDAPCS  G++RR P
Sbjct: 319 PHRARLVERTT--RQFDSIEVVSGDGRTFGGGQSAWRLGSFDRVVVDAPCSGMGSMRRRP 376

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +  W R   D+ +    QR+LL + ++  +PGG++ +  CS    ++ E V+++L++   
Sbjct: 377 ESRWNRTPADVEELTVLQRELLDRAVALTRPGGVLTYITCSPHAAETREQVERLLKA--G 434

Query: 387 PVELVPLNSAYWKSIDMAMA-LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            VEL+   +   +    A+   +  G I+       ++     G D  F   LR+
Sbjct: 435 EVELLDTVALANECAPQALDVPASAGVIKGFSGRTLQLWDHRFGTDLMFVACLRK 489


>gi|326382170|ref|ZP_08203862.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198900|gb|EGD56082.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 480

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/458 (23%), Positives = 168/458 (36%), Gaps = 36/458 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR+V+  +L  V  +      LL     +   R +S RD  L   +   T R +  +DA
Sbjct: 35  PARIVARDVLRAVRERDAYANLLLPKLLRE---RKISGRDAGLATELTYGTARSMGFLDA 91

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+              L  +LR+   Q+L   +  +A V  +V+ A+ +      +  VN
Sbjct: 92  VISAAAGRPAAEIDGPLLDVLRLGAYQLLRTRIGSHAAVSTSVDIARSENGM-GPSGFVN 150

Query: 126 SILRRVSREKIELLQRI-------------AGISIIPEWFKERLENFYGKE--RVLAISD 170
           ++LR+VS+   +L                 A     P W  E       +    + A   
Sbjct: 151 AVLRKVSQRDEQLWIDELAPSMMDDRIGNLAFTYAHPRWIGEVFYEALDRSTGELQAALA 210

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           A      + L  +      E  A              +         L    EG   VQD
Sbjct: 211 ADDERPIVHLVARPGQITAEELALISGGEEGRYSPYCVYLPEGDPGQLDAVREGFAGVQD 270

Query: 228 ASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCN 282
             + +        +        LDLCA PGGK A L        A  D  +    + +  
Sbjct: 271 EGSQLVAIALTRADVGADTGRWLDLCAGPGGKAALLGSLADVEGAHVDAVEISDHRAKLI 330

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
              +     D+   D      +  FD VLVDAPCS  G++RR P+  W R  +D+     
Sbjct: 331 EKVVDGLPVDVRVADGRASGLEPGFDRVLVDAPCSGLGSLRRRPEARWRRRPEDVPALVE 390

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q++LL + +  V+PGG+VV+S CS  + ++ EVV  VL      +  V         + 
Sbjct: 391 LQKQLLAEALRLVRPGGVVVYSTCSPHRAETVEVVDAVLSE-VSGITRVDARPLVAGDVF 449

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A +L P   +++ P             D  F  ALR+
Sbjct: 450 DADSLGPGPHVQLWPH--------RQDTDAMFLAALRK 479


>gi|110004340|emb|CAK98678.1| putative ribosomal rna small subunit methyltransferase protein
           [Spiroplasma citri]
          Length = 423

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 184/457 (40%), Gaps = 52/457 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M AR V+ ++L  +  K      LL      +       +D+ L+  IV  TL+    ++
Sbjct: 1   MQAREVAWNILWKIFAKNKFSNHLLSNIVEQN--DNFIDQDKTLIYRIVYGTLKNKLYLE 58

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            + +  + S   +    LQ LL +S+ Q  +LD + +YA+V+ AV  +K    +  +A  
Sbjct: 59  YIANQFIES--KKTNQKLQILLWMSIYQFRFLDRIPNYAIVNEAVNISKSV--SPKYAGF 114

Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+ L+++   K E+ +          +     P      L N Y ++    +    ++ 
Sbjct: 115 INTTLKKIFDSKDEIFEINIADETKKLSIKYSFPSSLYLILRNEYSEDIARQVMIDSLTI 174

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASA 230
             +   V     +    L+          L           +V+   F +G+ ++QD  +
Sbjct: 175 PKLSFRVNTLKISRDELLSKYSNYNLTKSLVSSVGVIADKPVVNSEMFKKGLIFIQDEMS 234

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
               ++        VLD+C+APGGK      +I +   + A D+S++++  ++ N  RL 
Sbjct: 235 MRIAEILDPQETDRVLDMCSAPGGKATHLSQIINNKGIIDAYDISEKKINLIKMNASRLG 294

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRK 346
           +       +DA     +  +D +L DAPCS  G I+R P++ +      ++      Q +
Sbjct: 295 ITNIYPHLLDARKINSEIQYDKILCDAPCSGLGVIKRKPEIKYHTLTNQELANLVEIQEQ 354

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL +    +KPGGI+V+S C+    ++   ++  L        +                
Sbjct: 355 LLEKAYQLLKPGGILVYSTCTFGGYENIVQIRNFLAKHSDLKIIT--------------- 399

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                         E+I G  +  DGF+   +R+  +
Sbjct: 400 -------------TEQIFGYENNTDGFYYCKIRKKDK 423


>gi|21244523|ref|NP_644105.1| Sun protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|46396950|sp|Q8PG22|RSMB_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|21110194|gb|AAM38641.1| Sun protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 436

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 124/453 (27%), Positives = 201/453 (44%), Gaps = 39/453 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +G+ +RL ++ +L+ V  +  SL   L              RD+ LV AI    +R  P
Sbjct: 7   TAGVASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L   L  +LP +   L+ LL V  AQ+  L +  +A +   V+  +     R  A
Sbjct: 63  AYEVALRQWLERALPPRDAELKALLMVGFAQLEVLQLPAHAALSATVDACRALGRPRQ-A 121

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180
            +VN+ILRR  RE    +   A  +  P W +++L   +  +   +  + A ++P+++ +
Sbjct: 122 GMVNAILRRAQREGFPAV---ADDAGWPSWLRKQLRADWGDRAEAIFTASAQMAPMWLRV 178

Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233
              + D  T+  +L  + +      +            +  LPGFAEG   VQD SA   
Sbjct: 179 QRSRTDPATYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQDGSAQQV 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR----LH 287
                   +  VLD CAAPGGK A       G ++ ALDV  RRLE+++  L R      
Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLVALDVDARRLERVQQTLQRTVPNAL 298

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           +  +     D   +   + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +L
Sbjct: 299 VALQAADAADTDAWWDGRPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIEALCALQARL 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      ++PGG ++++ CSL  ++++  V+  L+ +P          A  +++      
Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQRTPD---------ARAQTLGAQFGH 409

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +     +  P             DGFF   L +
Sbjct: 410 AAGAGRQRFPG--------EQHCDGFFYALLLK 434


>gi|312864944|ref|ZP_07725174.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           downei F0415]
 gi|311099564|gb|EFQ57778.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           downei F0415]
          Length = 439

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 115/459 (25%), Positives = 203/459 (44%), Gaps = 39/459 (8%)

Query: 1   MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M + +  +AR ++  +L  V ++       L      S    LSQ+D+ LV  +V  T+ 
Sbjct: 1   MANRLEKSARGLALKILEEVFQEGAYSNLALKRGLSGS---SLSQQDKALVTELVYGTVA 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
               ++  L  V+     + +  +  LL +S+ Q+LYLD +  +AV++ AVE AK  +  
Sbjct: 58  RKITLEWQLAHVIE-DRDKLESWVYTLLMLSLYQLLYLDKIPSHAVLNEAVELAKS-RSQ 115

Query: 118 RHFAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           R   KLVN++LR+                +R +    +P W  ++  + YG ER + I +
Sbjct: 116 RGADKLVNAVLRKLSKGPLADPASIKRQNKRYSVQYSLPVWLVKKTIDQYGHERAIKIFE 175

Query: 171 AC--ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
           +    +   + +T    +        A       + L +          F +G   +QD 
Sbjct: 176 SLFVRNKASVRVTNPAKLAEIQATTGAERSLLSPVGLVKESGYFAGTKYFEDGDLTIQDE 235

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           S+ +            VLD CAAPGGKTA     ++  +V ALD+   +L+ ++ N  RL
Sbjct: 236 SSQLVAPTLKLQGQEQVLDACAAPGGKTAHLASYLTSGQVLALDLYDHKLDLIKENARRL 295

Query: 287 HLYA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           H+       ++D            FD +LVDAPCS  G IRR PD+ + + + D      
Sbjct: 296 HVADRVRTKKLDARLVHQEFAPDSFDKILVDAPCSGIGLIRRKPDIKYKKASQDFESLQK 355

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      ++  GI+ +S C++ ++++++++QK L + P        N    K   
Sbjct: 356 IQFDILKSVCQTLRKNGIITYSTCTIFREENQDLIQKFLEAHP--------NFEQVKLEH 407

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +  + +I+ITP++           DGFF   L+R+
Sbjct: 408 RQEDILTDEFIQITPEL--------HLTDGFFIAQLKRV 438


>gi|169629894|ref|YP_001703543.1| Fmu protein (SUN protein) [Mycobacterium abscessus ATCC 19977]
 gi|169241861|emb|CAM62889.1| Probable Fmu protein (SUN protein) [Mycobacterium abscessus]
          Length = 471

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 169/460 (36%), Gaps = 45/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R  +  +L  V R+       L     +   R ++ RD      +   T R    +DA
Sbjct: 30  PPRQAALDVLRAVSRQDAYANLALPALLRE---RGITGRDAAFATELTYGTCRARGLLDA 86

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V++     ++ +    L+  LR+   Q+L   V  +A +   V+ A   + ++  A  VN
Sbjct: 87  VIEAAAGRTIDQVDEGLRDPLRLGAYQLLRTRVEPHAALSTTVD-AVAVEFDQGRAGFVN 145

Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE--RVLAISDA 171
           ++LR +SR                     A  +  P W  +   +  G     +  +  +
Sbjct: 146 AVLRTISRRDEADWVEELAPPESDRIGRLAFATAHPRWIAQSFSDALGPAGSELAQVLAS 205

Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                 + L  +      E  A  +   +       +         L    +G+  VQD 
Sbjct: 206 DDERPLVHLAARPGRIDAEALAEAVGGTVGRYSPFAVYLPGGDPGRLEPVRDGLAQVQDE 265

Query: 229 SASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLR 280
            + +  +          +   LDLCA PGGKTA         GA VTA++V+  R E + 
Sbjct: 266 GSQLIARATALAPLQGADEQWLDLCAGPGGKTALLGALAAQRGAHVTAVEVAPHRAELVA 325

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
                L +        D+        FD VLVDAPC+  G +RR P+  W R   DI + 
Sbjct: 326 NATKSLPVTVVTADGRDSDLAA--ASFDRVLVDAPCTGLGALRRRPEARWRRQPGDIPEL 383

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QR+LL   I   +PGG++V+S CS    ++  VV   +R   +  E           
Sbjct: 384 VKLQRELLASAIQLTRPGGVIVYSTCSPHLAETVGVVSDAVRRYAVSAEDARAVFPGVAG 443

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  A A      +++ P           G D  F   LR+
Sbjct: 444 LGDADA------VQLWPH--------RHGTDAMFTALLRK 469


>gi|224826197|ref|ZP_03699300.1| sun protein [Lutiella nitroferrum 2002]
 gi|224601834|gb|EEG08014.1| sun protein [Lutiella nitroferrum 2002]
          Length = 416

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 117/445 (26%), Positives = 183/445 (41%), Gaps = 48/445 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           L+++ LL  V     +LT  L      +    L+  ++  ++ I    LR L     VL 
Sbjct: 6   LLAAGLLEKVE-GGRTLTEALADAQRQAP--DLTPAERGALQDIGYGVLRHLAEWRRVLR 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +L   LP     L+++L V++ Q+ Y   A YAVV+ AV  A R    R F  LVN++L
Sbjct: 63  QLLPKPLPE--PQLERVLIVALHQLEYTRAAQYAVVNEAVTLAGRLARGR-FKGLVNAVL 119

Query: 129 RRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAI-SDACISPLYIDLTVK 183
           R   R++ EL   +A         P W+ + L   Y ++    +  D    P+ + +  +
Sbjct: 120 RNYLRQRDELKAAVAADDEARYNHPRWWIKALRRHYPQDWQAILDMDNQHPPMTLRVNRR 179

Query: 184 F-DIETWAHKLNAVMLPTGG----IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             +   +  +L    +              P  +  LPGFA+G   VQD  A        
Sbjct: 180 HVEPAAYLQRLRDAGIEAECLGEEAIQLARPVGVRELPGFADGDVSVQDQGAQQAAYRLD 239

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295
             + L VLD CAAPGGKT  ++        ALDV + RL ++  NL RL L A       
Sbjct: 240 LRDGLRVLDACAAPGGKTCHMLELADLDVTALDVDETRLGRVADNLARLQLSARLVAADA 299

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D   +     FD +L D PCS++G +RRHPD+ W R   D  + A  Q  L+      +
Sbjct: 300 GDTASWWDGVPFDRILADVPCSASGVVRRHPDIKWLRRPGDFAELARQQSALVDALWPLL 359

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
             GG ++++ CS+  +++ E +   L      V L                       ++
Sbjct: 360 ASGGKMLYATCSIFPEENREQLAAFLARHADAVCLDDQ--------------------QL 399

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P             DGF+   L +
Sbjct: 400 LPSEQ---------HDGFYYALLAK 415


>gi|297537409|ref|YP_003673178.1| sun protein [Methylotenera sp. 301]
 gi|297256756|gb|ADI28601.1| sun protein [Methylotenera sp. 301]
          Length = 439

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 187/452 (41%), Gaps = 39/452 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            ++++ ++ V+         L L    + F   + + +   + +   TLRF   IDA L 
Sbjct: 6   QIAANAVNQVLSGH---NLTLALPAALAVFPSATPQQRGAAQDLSYGTLRFYGEIDAYLV 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA---KRDKENRHFAKLVN 125
            +L   L      +  LL V++ Q+L+     + VV+ AV      KR         LVN
Sbjct: 63  QLLEKPLT--DDRINALLLVAIYQLLHDKADSFTVVNQAVHAVSQLKRPAPKSWAKGLVN 120

Query: 126 SILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY---- 177
           +ILR   R+K +L          +   P+W+  +L+  Y       +      P      
Sbjct: 121 AILRNFLRQKAQLAAKLKSSDVAVYSYPQWWVSKLKVQYPNHWQGMLETGNQHPPMTLRV 180

Query: 178 --IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
               ++++  ++    +            +   P  +  +PGF++G+  VQD  A +   
Sbjct: 181 NTQKISMQDYLQLLTRQDIEAKHIGAQALILANPVPVEKIPGFSDGIVSVQDLGAQLAAY 240

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY-AEDI 293
           L      ++VLD C APGGKT  ++        ALD  + RL++++ NL R+ L     +
Sbjct: 241 LLEAKVGMNVLDACCAPGGKTGHILELADVALTALDSDEVRLQRVQSNLSRMKLKANLLV 300

Query: 294 IEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +    D+          FD +L D PCS++G +RRH D+ W R   DI      Q K+L
Sbjct: 301 GDASMTDWWSDAKTAPQLFDRILADVPCSASGIVRRHVDIKWLRREADIASFTRQQAKIL 360

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +  GG +++  CS+  ++++  V   L+++    +L       + + ++     
Sbjct: 361 ANLWQMLAKGGKLLYVTCSVFNEENQGQVDNFLQNNADATQLPFALPDNYAAAEITQING 420

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                ++ P         ++  DGFF   L++
Sbjct: 421 -----QLIP---------TNAHDGFFYALLQK 438


>gi|294669086|ref|ZP_06734172.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
           subsp. glycolytica ATCC 29315]
 gi|291309078|gb|EFE50321.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
           subsp. glycolytica ATCC 29315]
          Length = 420

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 108/453 (23%), Positives = 195/453 (43%), Gaps = 53/453 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  K  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQQLAAESIAAV-AKGRNLQDVLAAI--RAAHPELTAQELGALQDIAYGCQRYLGSLKYM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ +   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPIG--NPQLESLLLAALYQLNHTRNAPHAVVNEAVENIAKIGRGQYRS-FANA 119

Query: 127 ILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR      +   +  +        P W+ + +   Y K     I  A      + L +
Sbjct: 120 ILRRFLREKEQLNAQCRRDDTAKYNFPGWWLDYMRQAYPKHW-HNIVTAANGHPPLTLRI 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E +  KL A  +          + +    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAEGYLEKLAAEGIAGKVLDEYAVILDEAVPVNRLPGFSDGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           +    +   +LD CAAPGGK+  ++  +   +TALD+ + RL+++  NL RL      + 
Sbjct: 239 ILKPADGERILDACAAPGGKSGHILELANCSLTALDIDEGRLKRVADNLSRLGFQTASLH 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +     FDAVL D PC+++G  +R+PD+ W R   D  K+A  Q  +L   
Sbjct: 299 RADAADLSSWYDGNPFDAVLADVPCTASGVTKRNPDIKWLRRPADGGKTARQQETMLDNL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
            S +KPGG ++ + CSL  ++++  +Q+ LR  P                          
Sbjct: 359 WSVLKPGGRMLLATCSLFHEENDGQLQRFLRRHPDAACTES------------------- 399

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            + + P   +         DGF+   +R+  QP
Sbjct: 400 -LTLLPKHTQ---------DGFYYALIRK--QP 420


>gi|258541970|ref|YP_003187403.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633048|dbj|BAH99023.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636105|dbj|BAI02074.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639160|dbj|BAI05122.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642214|dbj|BAI08169.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645269|dbj|BAI11217.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648324|dbj|BAI14265.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651377|dbj|BAI17311.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654368|dbj|BAI20295.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 440

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 131/436 (30%), Positives = 203/436 (46%), Gaps = 22/436 (5%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L  V+  R  L   L             +     + A    TLR +  +  
Sbjct: 25  PTRDIAFDILCGVVEHRRMLENSLSRSAEAHKAEPRDRAAAHRLAA---ATLRHMGTLRT 81

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL+  L    P     ++  L +  AQ+L+L+   +A V   V   +R K    FA L N
Sbjct: 82  VLEPFLRKEPPE---PVRVALMIGCAQLLFLETPPHAAVGTTVSLLRRRKL-APFAGLAN 137

Query: 126 SILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           ++LR+V+ E   +L+ +      IP W               AI++       +D+T++ 
Sbjct: 138 AVLRKVAAEGQNVLEGLDQARLNIPAWLWSSWSVLGRG-VPRAIAEGISHEAPLDITLRP 196

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                A      ++   G         +  L G+ EG +WVQDA+A++P +L        
Sbjct: 197 G----ATAPEGGIVLPNGSVRYPAGTRVADLAGYEEGAFWVQDAAATLPARLLNVKEGEK 252

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           V DLCAAPGGKTAQL V+GA+V A++ +  R+ +L+ NL RL L     ++ DA  + P 
Sbjct: 253 VADLCAAPGGKTAQLAVTGAQVAAIENNPNRMARLKENLARLGLGNVITLQADAGTWQPD 312

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
              DA+L+DAPCS+TGT RRHPDVLW +   D+      Q +LL    + ++PGG +V++
Sbjct: 313 APLDAILLDAPCSATGTARRHPDVLWVKRPRDLTTLTAGQDRLLEAAKNMLRPGGRLVYA 372

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CSL +++  +  +         + LVP      +   +  A +PEGW+R  P M     
Sbjct: 373 VCSLQQEEGPDRARAA-----EAMGLVPDPFTPEELAFLPEARTPEGWLRTHPGMWAD-- 425

Query: 425 GVSSGMDGFFAVALRR 440
                MDGFFA    R
Sbjct: 426 --KGSMDGFFAARFIR 439


>gi|171912374|ref|ZP_02927844.1| RsmB [Verrucomicrobium spinosum DSM 4136]
          Length = 414

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 183/443 (41%), Gaps = 42/443 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +N+R ++  +L    R  I    L++          L  RD  L++ +V  TLR +  +D
Sbjct: 6   LNSRQLALQILVEWERSEIYAADLIEKAAATHR---LDHRDTALLQTLVMGTLRNIDLLD 62

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             L+ V  +     + S+  LLR+ +AQ+L L++  +AVV+  V QA + +   +   L 
Sbjct: 63  IWLERVCDN--QHLETSVHWLLRLGIAQLLLLEMPAHAVVNETVNQAGKARGLVNAV-LR 119

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                R+          IA  +  P W  ER    +GK    A+ +    P    + V  
Sbjct: 120 RVDRERIPLLARMDRLPIAERTSHPSWLAERWTKQFGKSAAEALCEWDQQPASTYVRVNQ 179

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                      + L           +++      A G  + QD S  I   L       +
Sbjct: 180 LHPQPLTPEEVLPLEPISFPGFFRADTLPR-EWLASGRCYAQDPSTVIACDLLAPQPGET 238

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--- 298
           +LD CAAPGGK+A     + +  ++   D   RRL++++ NL+RL++   +  ++D    
Sbjct: 239 ILDACAAPGGKSAYLAQKMQNQGRILTCDSVPRRLQRMQQNLERLNVTIAENRQVDWTKP 298

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D +L+DAPCS+TG +RR  DV W  D +  V+ A  Q K+L      +K 
Sbjct: 299 LPPIWKGVQVDRILLDAPCSNTGVMRRRVDVRWRLDPEVFVEMAQLQTKILSTLSPLLKS 358

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S CSLD++++E+++   L + P    +                           
Sbjct: 359 GGSLVYSTCSLDREENEDIIASFLVAHPEFKLVE-------------------------- 392

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                      G DG FA  L +
Sbjct: 393 --TRSSLPWRDGFDGAFAALLLK 413


>gi|68536089|ref|YP_250794.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           jeikeium K411]
 gi|68263688|emb|CAI37176.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
           jeikeium K411]
          Length = 506

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 171/471 (36%), Gaps = 49/471 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           SG   R V   +L  V          L     +     +  RD      +   TLR    
Sbjct: 41  SGDKVRDVVFGVLRDVTVDGAFGNLALPKALRE---AGIKGRDAAFATELTYGTLRARGL 97

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DA+++      + +        LR+   QIL   V ++A V+ +VE  K     +  + 
Sbjct: 98  LDAIIEDAAGRKIEKIDSVALDALRLGAYQILRTRVENHAAVNTSVELVKAFGAGQ-ASG 156

Query: 123 LVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE--------R 164
            VN +LR ++R+K E               A  +  PEW  E   +    +         
Sbjct: 157 FVNGVLRALARKKPETWIERVAPGDSLADLALRNAHPEWIAEVFADALSVDPATDAGRAE 216

Query: 165 VLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
           +     A  +   + L  +      E  A              +     +   +    EG
Sbjct: 217 LKRTLAADDARPIVHLAGRPGQISGEELALITGGTEGKFSPYAVYLDEGAPGEIAPVREG 276

Query: 222 VWWVQDASASIPVQLFG-----TLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRR 275
           +  VQD  + +                  LDLCA PGGKTA +        A  D  +  
Sbjct: 277 MASVQDEGSQLIGLATTRVPVAADLPARWLDLCAGPGGKTAFIASVAMSEQATVDAIEIA 336

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFD-------YCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
             + +            +   D            P+  F  VL+DAPCS  G +RR P+ 
Sbjct: 337 DHRAKLIEQTTRDLPVCVHVGDGRKLEAIGDLDAPEGGFARVLIDAPCSGLGALRRRPEA 396

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            WT+D  D+      QR+LL+ G++   PGG+V++S CS   +++ EVV+ V   +    
Sbjct: 397 RWTKDPQDVAPLVTLQRELLVSGLAATAPGGVVIYSTCSPHPKETSEVVRSVAARTG--A 454

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           E++ +     +  +  +A +   ++++ P +         G D  F  ALR
Sbjct: 455 EILDVTELLPELAETNIAQTA-PFVQLWPHI--------HGTDAMFFAALR 496


>gi|326773324|ref|ZP_08232607.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           viscosus C505]
 gi|326636554|gb|EGE37457.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
           viscosus C505]
          Length = 515

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/476 (22%), Positives = 178/476 (37%), Gaps = 54/476 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +L+ V R       LL           L +RD     A+   TLR   R DA+
Sbjct: 50  ARQVALEVLTRVRRDDAFANLLLPELLE---TADLDRRDAGFATALTYGTLRLRGRYDAM 106

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       L R   ++  +LR+   Q++ + VA +A V   V+ A      R  A  VN+
Sbjct: 107 IAACTDRPLERIDPAVLDVLRLGAHQLMGMRVAQHAAVSTTVDLATTSCG-RGAATFVNA 165

Query: 127 ILRRVSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAIS 169
           ++RR+S   ++                 A     PEW  + L           E +  + 
Sbjct: 166 VMRRLSGRDLDSWMDELRRDAPDETSALARTQSHPEWIVKALRQALVTHGRSGEELEVLL 225

Query: 170 DACISPLYIDLTVKFDI------------ETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217
            A  +   + L  +  +               AH +         + +  +      +  
Sbjct: 226 AADNADPEVALCARPGLIAPEALAKAARKADRAHDVEPRPGRISPLAVVMVGGDPGRIEA 285

Query: 218 FAEGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTAL 269
             +    V+D  +     +         +   LDLCA PGGK     A+   +GA++ A 
Sbjct: 286 IRDCRAGVEDEGSQLVALVAAHAPVEGRDARWLDLCAGPGGKAALLAARAAQTGAQLLAN 345

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +VS  R + +R  L  +      +   D  D        +D VLVDAPC+  G++RR P+
Sbjct: 346 EVSPHRADLVRSALRAIAPDVARVRCGDGRDLGRDEPGAYDRVLVDAPCTGLGSLRRRPE 405

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSS 384
             W R   D+   A  QR+LL   +  V+ GG+V +  CS    ++  VV+   ++L   
Sbjct: 406 ARWRRQPQDVTVLAELQRELLASALRAVRRGGVVTYVTCSPHALETTLVVRDVTRLLERE 465

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  E +       +      A S    +++ P +         G D  F   LRR
Sbjct: 466 GLHTEPLHAGDVATRLAPQPPAGSDRETLQLWPHL--------DGTDAMFCALLRR 513


>gi|77464685|ref|YP_354189.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1]
 gi|77389103|gb|ABA80288.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1]
          Length = 421

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 124/439 (28%), Positives = 198/439 (45%), Gaps = 33/439 (7%)

Query: 4   GMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           GM   AR ++  LL  V+ +   L+  L      +A    ++  +     + +  LR L 
Sbjct: 13  GMADEARGMAVTLLDAVLGEGKLLSQALADLPAAAAPAERARAQR-----LASSVLRHLG 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +L   L  + P    +++ +LR++  ++     A + VV  AV+ A+R +  +H A
Sbjct: 68  PADRLLAPHLRKAPP---LTVRNILRLATVEMAADGAAPHGVVSSAVDLARRGRRTQHLA 124

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            LVN++LRR++      L        +P W ++ L   +G+  V AI     +P  +DLT
Sbjct: 125 GLVNAVLRRIAPASFAGLP----AQHLPMWLRQPLVRRWGRAVVTAIEAVQAAPPPLDLT 180

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
            +  +      L               P  + +LPG+  G WWV DA+A++ V L     
Sbjct: 181 ARPGLSAPGEPLPTGSFRL------RAPGQVSALPGYEAGQWWVHDAAAALAVNLLDPHA 234

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             +V DLCAAPGGKT QL   GA+  A     R   +      R    A  ++       
Sbjct: 235 GEAVADLCAAPGGKTLQLAAGGARHGA--RHFRGPPRAAPRESRADGPAGRVV--GRSPD 290

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                F+A+L+DAPCS+TGTIRRHPD+ + +D  ++      Q  +L   +  + PGG +
Sbjct: 291 WQGGPFEAILLDAPCSATGTIRRHPDLPFVKDGSELPSLVALQAAMLDHALGLLAPGGRL 350

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VF  CSL +++ E  +  +L   P      P              +  EG +R+ PD+  
Sbjct: 351 VFCTCSLLEEEGEAQLAALLERHPELTVERPTLPGV-----EPDWIGAEGGLRLRPDLWA 405

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +      GMDGFF   +RR
Sbjct: 406 EA----GGMDGFFMARVRR 420


>gi|329114269|ref|ZP_08243031.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
           pomorum DM001]
 gi|326696345|gb|EGE48024.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
           pomorum DM001]
          Length = 462

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/436 (29%), Positives = 200/436 (45%), Gaps = 22/436 (5%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  +L  V+  R  L   L             +     + A    TLR L  +  
Sbjct: 47  PTRDIAFDILCGVVEHRRMLENSLSRSAEAHKAEPRDRAAAHRLAA---ATLRHLGTLRT 103

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL+  L    P     ++  L +  AQ+L+L+   +A V   V   +R K    FA L N
Sbjct: 104 VLEPFLRKEPPE---PVRVALMIGCAQLLFLETPPHAAVGTTVSLLRRRKL-APFAGLAN 159

Query: 126 SILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           ++LR+V+ E   +L+ +      IP W               AI++       +D+T++ 
Sbjct: 160 AVLRKVAAEGQNVLEGLDQARLNIPAWLWSSWSVLGRG-VPRAIAEGISHEAPLDITMRP 218

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                A      ++   G         +  L G+ EG +WVQDA+A+ P +L        
Sbjct: 219 G----ATAPEGGIVLPNGSVRYPAGTRVAELAGYEEGAFWVQDAAATFPARLLNVQAGEK 274

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           V DLCAAPGGKTAQL  +GA V+A++ +  R+ +L+ NL RL       ++ DA  + P 
Sbjct: 275 VADLCAAPGGKTAQLAATGAHVSAIENNPNRMARLKENLARLGFTNVTTLQADAGTWQPD 334

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
              DA+L+DAPCS+TGT RRHPDVLW +   D+      Q +LL    + ++PGG +V++
Sbjct: 335 APLDAILLDAPCSATGTARRHPDVLWVKRPRDLTTLTAGQDRLLEAAKNMLRPGGRLVYA 394

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CSL +++  +  +         + LVP      +   +  A +PEGW+R  P M     
Sbjct: 395 VCSLQQEEGPDRARAA-----EAMGLVPDPFTPEELAFLPEARTPEGWLRTHPGMWAD-- 447

Query: 425 GVSSGMDGFFAVALRR 440
                MDGFFA    R
Sbjct: 448 --KGSMDGFFAARFTR 461


>gi|34499717|ref|NP_903932.1| sun protein [Chromobacterium violaceum ATCC 12472]
 gi|34105568|gb|AAQ61922.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472]
          Length = 416

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 111/446 (24%), Positives = 182/446 (40%), Gaps = 50/446 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++ +L+ +     +LT  L      +    L+  ++  ++ +   +LR L  +   L 
Sbjct: 6   QLAAEILARIEA-GTTLTDALADVQRQAG--KLTPAERGALQDLSYGSLRHLGVLRHCLR 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            ++   LP     +++LL +++ Q+ Y   A YAVV  AV  A      + F  LVN +L
Sbjct: 63  QLVPHPLPE--PQVERLLLIALYQLQYTRAAQYAVVHEAVTLAGMMARGK-FKALVNGVL 119

Query: 129 RRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           R   R + ELL   A      +  P+W+  RL+  Y  E   AI +A      + L V  
Sbjct: 120 RNFQRRRDELLANAAADEVAQANHPDWWVARLKEAYPAEW-RAILEASNVHPPLTLRVNR 178

Query: 185 DI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
                            A     G       P ++  LPGFAEG+  VQD  A       
Sbjct: 179 RRISVDDYLRRLEEAGLAAKALGGDAVQLARPVAVRDLPGFAEGLASVQDEGAQRAAYWL 238

Query: 238 GTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDII 294
                + VLD CAAPGGKT  +  ++  +VTALD+   RL ++  NL RL L A   +  
Sbjct: 239 DLKPGMRVLDACAAPGGKTGHMLEMADVEVTALDIDNARLARVGDNLRRLGLSAQLIEAD 298

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                ++   + FD +L D PCS++G +RRHPD+ W R   D       Q  +       
Sbjct: 299 ASRPDEWWGGRPFDRILADVPCSASGVVRRHPDIKWLRRPGDFAALGEQQAGMADALWPL 358

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +   G ++++ CS+  +++   ++  L+  P    L                       +
Sbjct: 359 LASRGKMLYATCSIFPEENRLQLEGFLKRHPDASCLKEE--------------------Q 398

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + P             DGF+   L +
Sbjct: 399 LLPCER---------HDGFYYALLEK 415


>gi|329117416|ref|ZP_08246133.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parauberis NCFD 2020]
 gi|326907821|gb|EGE54735.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
           parauberis NCFD 2020]
          Length = 440

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 121/450 (26%), Positives = 201/450 (44%), Gaps = 34/450 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  +L  +          L+ +  + A   LS +D+ L+  IV  TL     ++  
Sbjct: 9   ARGKALIVLEDIFENDAYSNLALNNQLTNIA---LSSKDKGLITEIVYGTLSRKMTLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   +      +K+    LL      +    V  +A+V+ AV  AK     R   K VN+
Sbjct: 66  LAHFIEDRDKIEKWVYYLLLLSLYQLLYLDKVPAHAIVNDAVNIAKNRGNKRGAEKYVNA 125

Query: 127 ILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--LY 177
           ILR +S  K+          +R +    +P W  +++ + +G+ER + I ++  +P    
Sbjct: 126 ILRLLSENKMPDIENIKRKNKRYSVKYSMPTWMVKKMIDQFGEERAVKIMESLFTPSKAS 185

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           I +T    I+    +L A       + L +      S   FAEG   VQD S+ +     
Sbjct: 186 IRVTDDVSIDQLQEELEADKSVLSPVGLTKSSGHFASSQAFAEGKVTVQDESSQLVAPTL 245

Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDII 294
               + ++LD C+APGGK   +   ++  KVTALD+   +LE +  N  RL L    D  
Sbjct: 246 EIKQDDNILDACSAPGGKAVHMASYLTSGKVTALDIYDHKLELVVENAKRLGLSERIDTQ 305

Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
            +D     ++ P   FD +LVDAPCS  G IRR PD+ +++D  D+      Q ++L   
Sbjct: 306 VLDARKVHEFFPADSFDKILVDAPCSGIGLIRRKPDIKYSKDLTDLEALQAIQLEILASV 365

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              V+ GGI+ +S C++  +++ +V++K L+S          N    K       +  +G
Sbjct: 366 CQTVRKGGIITYSTCTIFDEENFQVIEKFLQSHS--------NFEQVKLNHTQADIVKDG 417

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            I ITP+  +         DGFF   +RR+
Sbjct: 418 CIVITPEQYQ--------TDGFFIGQVRRV 439


>gi|318057055|ref|ZP_07975778.1| RNA-binding Sun protein [Streptomyces sp. SA3_actG]
          Length = 481

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/468 (19%), Positives = 162/468 (34%), Gaps = 44/468 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L     ++  +     RD  L   +V  TLR     D
Sbjct: 27  PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 86

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V   VE A+    +   ++ V
Sbjct: 87  AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 145

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169
           N++LRR+SR  ++               + ++ +   P W    L +  G  R  +  + 
Sbjct: 146 NAVLRRISRNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVSALWDSLGGPRGGIEDLL 205

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
            A      + L  +         L+A+                        ++P   +G 
Sbjct: 206 TADNERPEVTLVARPGRTDAEALLDALGEERALPGRWSPYAVRLTEGGEPGAVPAVRDGE 265

Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVSKR 274
             VQD  +        +      +   LD CA P              GA++ A +    
Sbjct: 266 AGVQDEGSQLVALALAKAPVEGRDALWLDACAGPGGKAALLAGLAAQRGARLVAAEKQPH 325

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           R   +   L       + +             FD VLVD PC+  G +RR P+  W R  
Sbjct: 326 RAGLVARALAGTPGPYQVVTADGTRPPWRPGTFDRVLVDVPCTGLGALRRRPEARWRRRP 385

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           +D+   A  QR LL + +  V+ GG+V ++ CS    ++  VV  +L       EL+   
Sbjct: 386 EDLDSFAPLQRALLHEALRSVRVGGVVGYATCSPHLAETRAVVADILDEWGGDAELLDAP 445

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +   +             +++ P +         G D  +   LRR  
Sbjct: 446 ALLPEVPLTGEGPD----LQLWPHV--------HGTDAMYLALLRRTA 481


>gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 368

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 170/379 (44%), Gaps = 34/379 (8%)

Query: 86  LRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIE 137
           LR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE         +
Sbjct: 2   LRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKD 60

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--- 194
            ++R+A     P W  +   + YG E    + +  + P      V  D  T    +    
Sbjct: 61  PVERLAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLA 120

Query: 195 -----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
                A         ++    ++     F +G   +QD S+ +  +        +VLD C
Sbjct: 121 SEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSC 180

Query: 250 AAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCP 303
           AAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D     ++  
Sbjct: 181 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFS 240

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+
Sbjct: 241 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 300

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C+++K ++E+V+ K L+  P   E     +   +  +       EG ++I P      
Sbjct: 301 STCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSKYINEGQVQILPHYFA-- 355

Query: 424 DGVSSGMDGFFAVALRRLI 442
                  DGF+   LR+ +
Sbjct: 356 ------TDGFYIACLRKKV 368


>gi|319937497|ref|ZP_08011902.1| SUN protein [Coprobacillus sp. 29_1]
 gi|319807337|gb|EFW03946.1| SUN protein [Coprobacillus sp. 29_1]
          Length = 416

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/449 (20%), Positives = 190/449 (42%), Gaps = 52/449 (11%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L    +++  L   L   + +   + +S+  +  +  +V  T++ +  ++ +L
Sbjct: 3   RQFALDILLKYKQEKSYLNLSLHACFQN---QQISREQKDFITRVVYGTVQNMLYLEYLL 59

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  L     R K   + LL +S+ Q  ++D + DYA+V+ AV    + K+    A+ +N+
Sbjct: 60  EPHLK---TRVKAYEKMLLLMSLYQHEFMDSIPDYAIVNEAVRL-AKKKKGTKTAQFINA 115

Query: 127 ILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           +L     +        +  +R++  +  P W  + L   YG+E    I  A     Y   
Sbjct: 116 VLNHAFHQHRSLDELDDEKERLSIETSHPLWLVKMLSKQYGEEETRKICYADNEVPYKSA 175

Query: 181 TVKFDIETWAHKLNAVMLPTGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
            V          L   M   G      L     +I +   + EG+  +QD S+ +  +L 
Sbjct: 176 RVNTLKTKKESLLKDDMWSEGQLSPDCLYYQRGNIANTKYYQEGLVTIQDESSQMVARLL 235

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
               +  +LD+C APGGKT+ L   + +  ++ A D+ + ++  ++  + RL +    + 
Sbjct: 236 NPQPHEYILDMCCAPGGKTSHLAALMKNQGRIDAYDLYEHKIPLVKEQMQRLGVDIVHVQ 295

Query: 295 EMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             D+       P   FD +L+DAPCS  G + R P++ +  D+D + +    Q+KLL   
Sbjct: 296 AYDSTHLIELYPADTFDRILLDAPCSGLGVLARKPEIKYH-DSDSMDEIIQIQQKLLENA 354

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG +V+S C+++K+++ + ++  +++     ++                     
Sbjct: 355 YFLLKNGGRIVYSTCTINKKENGKQIETFIKNHSDMKKIEET------------------ 396

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      I       DGF+   L +
Sbjct: 397 ----------TILPYQYHSDGFYMCLLEK 415


>gi|314987947|gb|EFT32038.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL005PA2]
          Length = 458

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 178/459 (38%), Gaps = 37/459 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR ++   L  V          L      +    L+ RD      +V+ T R   
Sbjct: 10  RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +++     +  + +  ++ +LR++  QIL + V   A V  +V+ A +    R   
Sbjct: 67  TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125

Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            LVN+I RR+S   +E              +A  ++ P W  +  ++  G + V     A
Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L V+  +       +          +   P +   +    EG   +QD  + 
Sbjct: 186 DNEPPVQKLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244

Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282
           + +                LDLCA PGGK+A            +TA+++ + R + +   
Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304

Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L R       ++  D      PK+ F AVL D PCS  G++RR P+  W R   D+ +  
Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL+  ++  +PGG++ +  CS  + ++ +++     + P+ V   P   A   +I
Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A      I++ P           G D  F   LR+
Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451


>gi|253997900|ref|YP_003049963.1| sun protein [Methylovorus sp. SIP3-4]
 gi|253984579|gb|ACT49436.1| sun protein [Methylovorus sp. SIP3-4]
          Length = 427

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 107/448 (23%), Positives = 193/448 (43%), Gaps = 39/448 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  +  V+    +L   LD  +  S  R L+ + + + + +    LR   ++ A+
Sbjct: 4   AQQLAAEAVHQVL-TGRNLGVTLDAMF--SRQRSLTPQQRGMTQDLSYGCLRQYGQLQAL 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L+ +L   L  +   L+ LL V++ Q+     A + +VD AV QA    +      L N+
Sbjct: 61  LNQLLQKPL--QDERLRCLLLVAIYQLQQARAASHTIVDQAV-QASAQFKKPWVKGLTNA 117

Query: 127 ILRRVSREKIELLQRIAG-----ISIIPEWFKERLENFYGKER-VLAISDACISPLYIDL 180
           +LR   R++  L++ I           P+W+  +L + Y +E   + ++     P+ + +
Sbjct: 118 VLRNFLRQQDVLVKNIDPTDDVARYSYPQWWVNKLRHQYPQEWKAMLLAGNQHPPMTLRV 177

Query: 181 TVKF-DIETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             +   +E ++ +L     A     G       P  +  +PGF EG   VQDA A     
Sbjct: 178 NRRHLSVEAYSQQLADAGIAASELGGSAVTLTQPIPVERIPGFLEGDVSVQDAGAQWAAP 237

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292
           L      + VLD C APGGKT  ++  +   + A+D    RL +   NL RL L A    
Sbjct: 238 LLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVT 297

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               DA  +   + FD +L D PC+++G +RRH D+ W R   D+      Q  +L Q  
Sbjct: 298 GDAADASGWWDGRPFDRILADVPCTASGIVRRHVDIKWLRREADVASFVRQQALILPQLW 357

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +  GG ++++ CS+  +++++ + + L+      +L     A                
Sbjct: 358 QCLAKGGKLLYATCSVFHEENQQQIDRFLQQHADAKQLPLSQDAS--------------- 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
               P          +  DGFF   L++
Sbjct: 403 ----PHARHGQFYPCAAHDGFFYALLQK 426


>gi|301321426|gb|ADK70069.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 423

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/454 (20%), Positives = 190/454 (41%), Gaps = 53/454 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN+R ++  +L  V   +     LL+        + L+Q+ +  +  +V+  +     +D
Sbjct: 1   MNSRYIAFDILKKVFVNKAYSNVLLNKISK----KDLNQQTKDFIFNLVHGVISNKIHLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L  ++   + +    LQ +L +S+ Q++YL+ + +YA+V+ +V   K    ++  A  
Sbjct: 57  YLLTKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 112

Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+IL +  R K   L+            +          L   Y K+ V  I       
Sbjct: 113 INAILNKFLRFKDTYLEINLDNKDLELCILHSFSYELYLMLIKQYDKDIVNQIVVNNHQI 172

Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
             + + +     T     N      ++  T         ++I++   +  G   +QD ++
Sbjct: 173 PKLYIRLNTLKITSDQLFNKYKDIYLLKKTNVNDCLIANKTIINSNLYKNGFITIQDKAS 232

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  Q+     N  VLD+C+APGGK   L +   +   +   ++++ +++ ++ N++RL+
Sbjct: 233 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIIGNEINESKIKLIKENINRLN 292

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +  MDA     K+ FD VL+DAPCS  G  +R P++    D   +      Q +L
Sbjct: 293 CLNISLTNMDARKIKQKEEFDYVLLDAPCSGFGVFKRKPEIKLRFDQVQVNSIINLQEEL 352

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K  G +V+S C++++ +++  + K L      V+L                 
Sbjct: 353 LESAYYNLKNNGEMVYSTCTINQDENQNQITKFLNRHEDMVKL----------------- 395

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                        ++I G     DGF+   L++L
Sbjct: 396 -----------YEKQIFGFEENTDGFYICKLKKL 418


>gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 432

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/454 (20%), Positives = 190/454 (41%), Gaps = 53/454 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN+R ++  +L  V   +     LL+        + L+Q+ +  +  +V+  +     +D
Sbjct: 10  MNSRYIAFDILKKVFVNKAYSNVLLNKISK----KDLNQQTKDFIFNLVHGVISNKIHLD 65

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
            +L  ++   + +    LQ +L +S+ Q++YL+ + +YA+V+ +V   K    ++  A  
Sbjct: 66  YLLTKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 121

Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N+IL +  R K   L+            +          L   Y K+ V  I       
Sbjct: 122 INAILNKFLRFKDTYLEINLDNKDLELCILHSFSYELYLMLIKQYDKDIVNQIVVNNHQI 181

Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
             + + +     T     N      ++  T         ++I++   +  G   +QD ++
Sbjct: 182 PKLYIRLNTLKITSDQLFNKYKDIYLLKKTNVNDCLIANKTIINSNLYKNGFITIQDKAS 241

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  Q+     N  VLD+C+APGGK   L +   +   +   ++++ +++ ++ N++RL+
Sbjct: 242 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIIGNEINESKIKLIKENINRLN 301

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                +  MDA     K+ FD VL+DAPCS  G  +R P++    D   +      Q +L
Sbjct: 302 CLNISLTNMDARKIKQKEEFDYVLLDAPCSGFGVFKRKPEIKLRFDQVQVNSIINLQEEL 361

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +K  G +V+S C++++ +++  + K L      V+L                 
Sbjct: 362 LESAYYNLKNNGEMVYSTCTINQDENQNQITKFLNRHEDMVKL----------------- 404

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                        ++I G     DGF+   L++L
Sbjct: 405 -----------YEKQIFGFEENTDGFYICKLKKL 427


>gi|320011939|gb|ADW06789.1| Fmu (Sun) domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 477

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/467 (21%), Positives = 171/467 (36%), Gaps = 43/467 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R ++  +L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 20  PVRFLAFEVLRAVDERDAYANLVLPPLLKKARAKGDFEGRDAALATELVYGTLRRQGTYD 79

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L + V Q+L   +  +A V  +VE A+        AK V
Sbjct: 80  AIVAACIDRPLREVDPPVLDVLNMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+VS   ++               + ++ +   P W    L +  G  R     + 
Sbjct: 139 NAVLRKVSAHDLDGWVERVAPSWDEDAEEHLSVVHSHPRWVVSALWDALGGGRAGIEDLL 198

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
           +A      + L  +    T    L+A+   +G                   +L    +G 
Sbjct: 199 EADNERPEVTLVARPGRSTTDELLDALGEESGLPGRWSPYAVRMAEGGEPGALAAVRDGS 258

Query: 223 WWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIVSGAKV----TALDVSKR 274
             VQD  + +             +   LD CA PGGK A L    A       A +    
Sbjct: 259 AGVQDEGSQLVAAALAAAPVEGTDTRWLDGCAGPGGKAALLAALAAGRGATLLAAEKQPH 318

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           R   +   L       + I             FD VL+D PCS  G +RR P+  W R  
Sbjct: 319 RARLVERALAGNPGPYQVITADGTRPPWQPGSFDRVLMDVPCSGLGALRRRPESRWRRRP 378

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL 393
           +D+   A  QR LL + +  V+ GG+V ++ CS    ++  VV+ VL+      VE   +
Sbjct: 379 EDLESFAPLQRGLLREALKAVRIGGVVGYATCSPHLAETRVVVEDVLKGRGGAAVEAEWI 438

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++        A+   P+  +++ P +         G D  +   LRR
Sbjct: 439 DARPLLPGVPALGDGPD--VQLWPHL--------HGTDAMYLALLRR 475


>gi|87121018|ref|ZP_01076910.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
 gi|86163856|gb|EAQ65129.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
          Length = 412

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 110/425 (25%), Positives = 186/425 (43%), Gaps = 35/425 (8%)

Query: 35  DSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL 94
                 +       ++ I     R  P++++    +L      K Y +   + V++ QI 
Sbjct: 6   SRKQADVKPEHIPQLKEICFGVSRHYPKLNSFALHMLDKPFQEKDYDVYAAILVALYQID 65

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ----RIAGISIIPE 150
           Y+D  ++A V+ AVE AK         KLVN+ILRR  RE  ++        +     P+
Sbjct: 66  YMDTPEHAAVNEAVESAK-LIGKPWAGKLVNAILRRYLREADDIKAILKAMPSVAHAHPK 124

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKL------NAVMLPTG 201
           W  +R    +  E    I +A  +   + L V       ET   KL      N     + 
Sbjct: 125 WLLKRFNKHWANE-FEHIVEANNARPPMCLRVNLSRVSRETQMEKLSQLGIENEKGEFSE 183

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-I 260
                +   S+ SLPGF +G   VQD +A +   +        VLD CAAPGGKT  L  
Sbjct: 184 SAIYLKNAVSVQSLPGFFDGDMSVQDEAAQLSASILAPKEGDKVLDACAAPGGKTGHLLE 243

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
            +   +TA+++   RL K+  NL+RL   A        D   +  K  FD +L+D PCS+
Sbjct: 244 SADIHLTAVELESWRLAKIEENLERLEFNAELICADSGDLDAWWDKTPFDKILLDVPCSA 303

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           TG IRR+PD+   R   DIV+    Q++L+      +KPGG ++++ CS+  +++E  + 
Sbjct: 304 TGVIRRNPDIKINRKPADIVELVEIQKQLVNNIWLALKPGGKLLYATCSVMPEENEHQMA 363

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           + L ++    E+         ++ +         I++ P+         +  DGF+   +
Sbjct: 364 EFLSTTEDAKEI---------NLTVPWGKKVSHGIQLLPN--------KNSHDGFYYCLI 406

Query: 439 RRLIQ 443
            ++ +
Sbjct: 407 EKMGK 411


>gi|258654277|ref|YP_003203433.1| Fmu (Sun) domain-containing protein [Nakamurella multipartita DSM
           44233]
 gi|258557502|gb|ACV80444.1| Fmu (Sun) domain protein [Nakamurella multipartita DSM 44233]
          Length = 494

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 150/473 (31%), Gaps = 58/473 (12%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  LL+ V  +       L     D   R +  RD  L   +   + R L ++DA
Sbjct: 40  PARQAALDLLAAVRSRGAYANLALPPILRD---RRIGGRDAALATELAYGSCRALGQLDA 96

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+              +   LR+   Q+L+  +  +A V   VE  +        A  VN
Sbjct: 97  VITACGDRPFAELDGEVIDALRLGAYQLLHTRIPPHAAVSSTVELVRAGDR-AGAAGYVN 155

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLEN-------------- 158
           ++LRR++   ++                 +A  +  P W    L +              
Sbjct: 156 AVLRRIAEADLDTWVQRLAPPAEQDRLGHLAMATAHPRWIVSALADRLAPDTATPTASNT 215

Query: 159 --FYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIV 213
                 + +     A   P  + L  +      +                 +        
Sbjct: 216 DTDTATDELEKALRADDVPPTVHLVARPGLIGRDELVTASGGTPAQYSPYGVYLHGTDPG 275

Query: 214 SLPGFAEGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL 269
            +   A+G   VQD  +               +   LDL A PGGK   L    A   A 
Sbjct: 276 RVSAVADGRAAVQDEGSQLVATALATATLDGPDERWLDLAAGPGGKAGLLGAFAAGRGAH 335

Query: 270 -DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPD 327
            D  +    +              +   D       +  +D VL+DAPC+  G +RR P+
Sbjct: 336 LDAVEIGPHRADLVRRTTAGLPVTVHTADGRASGLDEDAYDRVLLDAPCTGLGALRRRPE 395

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
             W R   D+ +    Q++LL      V+ GG++ +  CS    ++  VV       P  
Sbjct: 396 SRWRRTPSDVPELVELQQELLAAAARHVRVGGLIAYVTCSPHLAETLGVV----GRRPDQ 451

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +EL            +    +    +++ P           G DG F   LRR
Sbjct: 452 LELCDARPFLPGVPALGDGPT----VQLWPH--------RQGTDGMFLALLRR 492


>gi|302533355|ref|ZP_07285697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp.
           C]
 gi|302442250|gb|EFL14066.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp.
           C]
          Length = 488

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/473 (22%), Positives = 168/473 (35%), Gaps = 49/473 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +        RD  L   +V  TLR     D
Sbjct: 29  PVRMLAFEALRAVDERDAYANLVLPPLLKKARQDERFQARDAALATELVYGTLRRQGTYD 88

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           AV+   +   L      +  +L +   Q+L   +  +A V  +VE A+    +   AK V
Sbjct: 89  AVIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 147

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+++   ++               + +A     P W    L +  G  R     + 
Sbjct: 148 NAVLRKIAAHDLDGWLERVAPPYEEDAEEHLAVYHSHPRWVVSALWDALGGGRAGIEDLL 207

Query: 170 DACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGV 222
           +A      + L  +      E     L       G                +L    EG 
Sbjct: 208 EADNERPEVTLVARPGRSTPEELVEALGEESALPGRWSPYAVRMAEGGEPGALEAVREGR 267

Query: 223 WWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274
             VQD  + +       +     +   LD CA PGGK A L       GA + A +    
Sbjct: 268 AGVQDEGSQLVAMALAAVPVEGRDERWLDGCAGPGGKAALLGALAAERGAFLLASEKQPH 327

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           R   +   L       + I             FD VL+D PCS  G +RR P+  W R  
Sbjct: 328 RARLVEKALSGNPGPYQVIAADGTRPAWLPGSFDRVLMDVPCSGLGALRRRPEARWRRRP 387

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-----SSPIPVE 389
           +D+   A  QR LL + +S V+ GG+V ++ CS    ++  VV+ VLR     +SP+  E
Sbjct: 388 EDLEGFAPLQRALLREALSAVRVGGVVGYATCSPHLAETRVVVEDVLRGRGAGNSPVAAE 447

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           LV           +         +++ P +         G D  +   LRR  
Sbjct: 448 LVDARPYMEGVPVLGDGPD----VQLWPHL--------HGTDAMYLALLRRTA 488


>gi|307326811|ref|ZP_07606003.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306887574|gb|EFN18568.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 489

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 99/471 (21%), Positives = 162/471 (34%), Gaps = 46/471 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR------LLSQRDQILVRAIVNVTLRF 59
             R+++   L  V  +      +L      +             RD  L   +V  TLR 
Sbjct: 27  PVRILAFEALRAVDERDAYANLVLPPLLRKARESAEAGGPRFDARDAALATELVYGTLRH 86

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
               DA++   +   L      +  +L +   Q+L   +  +A V  +VE A+    +  
Sbjct: 87  QGTYDAIIAECVDRPLREVDPPVLDVLNLGAHQLLGTRIPTHAAVSASVELARVVLGD-G 145

Query: 120 FAKLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENF--YGKER 164
            AK VN++LRR++   ++               + +      P W    L +    G   
Sbjct: 146 RAKFVNAVLRRIAAHDLDGWLERVAPPYDEDPEEHLGVRHSHPRWVVSALWDALGGGSSG 205

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPG 217
           +  +  A      + L  +    T    L+AV                        +L  
Sbjct: 206 IEELLAADNERPEVTLVARPGRSTAGELLDAVGEGAAVQGRWSPYAVRLTEGGEPGALEA 265

Query: 218 FAEGVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSK 273
             EG   VQD  + +             +   LD CA PGGK A L    A+  A  ++ 
Sbjct: 266 VREGRAGVQDEGSQLVALALANAPLEGEDRRWLDGCAGPGGKAALLAALAAERGAALLAA 325

Query: 274 RRLEKLRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
            +       + R          +I  D          FD VLVD PC+  G +RR P+  
Sbjct: 326 EKQPHRARLVARALAGNPGPYQVIAADGTRPPWRPGAFDRVLVDVPCTGLGALRRRPEAR 385

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W R  +D+   A  QR LL + ++  + GG+V ++ CS    ++  VV+ VL+    P  
Sbjct: 386 WRRRPEDLDGFAPLQRGLLREALASARIGGVVGYATCSPHPAETRAVVEDVLKGRGGPAV 445

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 A      +   L     I++ P           G D  +   LRR
Sbjct: 446 SAEWIDARPLLPGVPE-LGDGPDIQLWPH--------RHGTDAMYLALLRR 487


>gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1273]
 gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           AH1273]
          Length = 369

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 101/380 (26%), Positives = 172/380 (45%), Gaps = 34/380 (8%)

Query: 85  LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KI 136
           LLR+S+ Q+LYLD V + A +  AVE AKR + ++  + +VN +LR + RE         
Sbjct: 2   LLRLSLYQMLYLDRVPERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLEEIK 60

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--- 193
           + ++R+A  +  P W  +   + YG E    + +  + P      V  D  T    +   
Sbjct: 61  DPVERLAITTSHPAWLVQDWVSEYGLETAGKMCEVNMLPPVPTARVNVDKVTVEEAIGLL 120

Query: 194 -----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
                 A         ++    ++     F +G   +QD S+ +  +         VLD 
Sbjct: 121 ANEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNEGDEVLDS 180

Query: 249 CAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYC 302
           CAAPGGKT  +        KV +LD+   ++  +R   DRL L   +   +D     ++ 
Sbjct: 181 CAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQADRLGLENVETKALDARKVQEHF 240

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V
Sbjct: 241 ENETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILEKIAPLLKQGGRLV 300

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C+++K ++E+V+++ L+  P   E     +   +  +       EG ++I P     
Sbjct: 301 YSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA- 356

Query: 423 IDGVSSGMDGFFAVALRRLI 442
                   DGF+   LR+ +
Sbjct: 357 -------TDGFYIACLRKKV 369


>gi|220912433|ref|YP_002487742.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6]
 gi|219859311|gb|ACL39653.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6]
          Length = 527

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 100/472 (21%), Positives = 167/472 (35%), Gaps = 47/472 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLV+  +L  V ++      +L           L +RD      +    LR     DA
Sbjct: 68  PARLVAFEVLRAVAQEDAYANLVLPARIRQHR---LDKRDAGFATELSCGALRGQGTYDA 124

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL   +   L +   ++   LR+ V Q+L + V  +A +D  V  A+        + L+N
Sbjct: 125 VLARCVDRPLDQLDPAVLDALRIGVHQLLAMRVPAHAALDQTVGLARAVIG-AGPSALIN 183

Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENFYGKE-----RVLAI 168
           ++LR+VS   ++              +  +     PEW    +             + A+
Sbjct: 184 AVLRKVSAHSLDEWLDVLAADETDETRIASLRHAHPEWIVRAMRQALVAHGRPVGEINAL 243

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226
            +A  +   ++L     +      L     P              +  L     G   VQ
Sbjct: 244 LEADNAAPVVNLVALPGLGNLDEALEDGATPGELVEGSALSSGGDLGRLSSVRAGTTRVQ 303

Query: 227 DASASIPVQLF----------GTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272
           D  + +  +                  + LDLCA PGGK A         GA + A + +
Sbjct: 304 DVGSQLVARAMAAVELGTAGPDDAAPEAWLDLCAGPGGKAALLGALARERGATLLANEPA 363

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLW 330
             R + ++  L  +      +   D  +   +    FD VLVD PCS  G +RR P+  W
Sbjct: 364 PHRAKLVKQALSAVPEDTWQVRTGDGREVGAEHPGSFDRVLVDVPCSGLGALRRRPESRW 423

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            R   D+      QR LL   ++ V+PGG+V +  CS    ++  VV   LR       L
Sbjct: 424 RRSPKDLADLGPLQRDLLSSALAAVRPGGVVAYVTCSPHPAETTAVVSDALRKRDDLELL 483

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +    S+   +    E   ++ P +           D  F   +R+  
Sbjct: 484 DAGAALDAVSLTGNLGAGHEMTAQLWPHL--------HSTDAMFLALIRKKA 527


>gi|294811534|ref|ZP_06770177.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326440079|ref|ZP_08214813.1| RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064]
 gi|294324133|gb|EFG05776.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 481

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 167/471 (35%), Gaps = 47/471 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 24  PVRILAFEALRAVDERDAYANLVLPPLLRKAREKGDFDARDAALATELVYGTLRLQGTYD 83

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           AV+   +   L      +  +L +   Q+L   +  +A V   VE A+    +   AK V
Sbjct: 84  AVIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPSHAAVSATVELARVVLGD-GRAKFV 142

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LRR++R+ ++               + +A +   P W    L +  G  R     + 
Sbjct: 143 NAVLRRIARDDLDTWVERVAPPYEKDAEEHLAVVHSHPRWIVSALWDALGGGRAGIEDLL 202

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
            A      + L  +    T    L A+   +G                    L    EG 
Sbjct: 203 AADNERPEVTLVARPGRSTPEELLAALGEDSGLPGRWSPYAVRLAEGGEPGLLDAVREGR 262

Query: 223 WWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278
             VQD  + +             +   LD CA PGGK A L    A   A  ++  +   
Sbjct: 263 AGVQDEGSQLVALALANAPLEGPDARWLDGCAGPGGKAALLAGVAAGRGATLLAAEKQPH 322

Query: 279 LRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
               + R          +I  D          FD VL+D PCS  G +RR P+  W R +
Sbjct: 323 RAGLVARSLAGNPGPYQVITADGTRPPWRPDSFDRVLMDVPCSGLGALRRRPEARWRRRS 382

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS---PIPVELV 391
           +D+   A  QR LL + +  V+ GG+V ++ CS    ++  VV  VLR     P+  E V
Sbjct: 383 EDLEGFAPLQRSLLREALRAVRVGGVVGYATCSPHLAETRVVVDDVLRGRGGDPVAAEWV 442

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                      +         I++ P +         G D  +   LRR  
Sbjct: 443 DARPLLPGVPALGDGPD----IQLWPHL--------HGTDAMYLALLRRTA 481


>gi|333028379|ref|ZP_08456443.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071]
 gi|332748231|gb|EGJ78672.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071]
          Length = 486

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/468 (19%), Positives = 162/468 (34%), Gaps = 44/468 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L     ++  +     RD  L   +V  TLR     D
Sbjct: 32  PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 91

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V   VE A+    +   ++ V
Sbjct: 92  AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 150

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169
           N++LRR+SR  ++               + ++ +   P W    L +  G  R  +  + 
Sbjct: 151 NAVLRRISRNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVSALWDSLGGPRGGIEDLL 210

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
            A      + L  +         L+A+                        ++P   +G 
Sbjct: 211 TADNERPEVTLVARPGRTDAEALLDALGEERALPGRWSPYAVRLTEGGEPGAVPAVRDGE 270

Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVSKR 274
             VQD  +        +      +   LD CA P              GA++ A +    
Sbjct: 271 AGVQDEGSQLVALALAKAPVEGRDALWLDACAGPGGKAALLAGLAAQRGARLVAAEKQPH 330

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           R   +   L       + +             FD VLVD PC+  G +RR P+  W R  
Sbjct: 331 RAGLVARALAGTPGPYQVVTADGTRPPWRPGTFDRVLVDVPCTGLGALRRRPEARWRRRP 390

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           +D+   A  QR LL + +  V+ GG+V ++ CS    ++  VV  +L       EL+   
Sbjct: 391 EDLDSFAPLQRALLHEALRSVRVGGVVGYATCSPHLAETRAVVADILDEWGGDAELLDAP 450

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +   +             +++ P +         G D  +   LRR  
Sbjct: 451 ALLPEVPLTGEGPD----LQLWPHV--------HGTDAMYLALLRRTA 486


>gi|288904707|ref|YP_003429928.1| RNA-binding Sun protein [Streptococcus gallolyticus UCN34]
 gi|288731432|emb|CBI12984.1| putative RNA-binding Sun protein [Streptococcus gallolyticus UCN34]
          Length = 440

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 115/452 (25%), Positives = 194/452 (42%), Gaps = 36/452 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++  +L  V          L+ E   +    L+ +D+ LV  IV  T+     ++ 
Sbjct: 8   QARGLALLVLENVFEDGAYSNIALNQELSHT---TLTPKDKSLVTEIVYGTVARKITLEW 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +    +  LL +S+ Q+LYLD +  +AVV+ AV  AK     +   K V
Sbjct: 65  YLAHYI-KDRDKLDSWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAKNRGNKKGAEKFV 123

Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175
           N++LRR                +R + +  +P W  ++L + +G+ER +AI  +    + 
Sbjct: 124 NAVLRRFTKEELPNPETIKRKNKRYSVLYSLPVWLVKKLIDQFGEERAVAIMQSLFVRNK 183

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             I +T    +        A       + L +          FA G   +QD S+ +   
Sbjct: 184 ASIRVTNLDKLAEIEAATGAEQSILSPVGLVKTSGHFAGTDHFANGDITIQDESSQLVAP 243

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292
                 N  +LD CAAPGGKT  +   +    +TALD+   +L  +  N  RLH+     
Sbjct: 244 TLNIQGNEDILDACAAPGGKTTHMASYLKEGHITALDLYDHKLTLVMDNARRLHVADKIS 303

Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +MD     ++     FD +LVDAPCS  G IRR PD+ + ++  D       Q ++L 
Sbjct: 304 TQKMDATTVHEHFAPDSFDKILVDAPCSGIGLIRRKPDIKYNKENQDFSALQEIQLQILD 363

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                ++ GGI+ +S C++  +++ +V+ K L + P        N    K       +  
Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIVR 415

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +G I ITP+  +         DGFF   ++R+
Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439


>gi|326388835|ref|ZP_08210417.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206435|gb|EGD57270.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370]
          Length = 406

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 209/430 (48%), Gaps = 28/430 (6%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V+R+   L                   D+ L  AI    LR+L  +DA++D     
Sbjct: 1   MLDAVLRRGDPLDQAAPPLLRPVPRAD----DRALALAIAQEALRWLADLDALIDGATRL 56

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           +LP      + +LR+ + Q+L L +  +AV+   +         R  A     +   +  
Sbjct: 57  TLPE-DAKARTVLRLMLVQVLRLGLPPHAVIATGLPLL--VGGPRRLAH---GVFSTIVG 110

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET--WAH 191
              +    +  +  +PE    R    +G ER  AI+     P  +DLT+     T  WA 
Sbjct: 111 SADKGADLLPPVPSLPEAVAARWGLAWG-ERAQAIAAGIAVPPPLDLTLADSEATGQWAE 169

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF-GTLNNLSVLDLCA 250
           +L    L  G +RL    +++ +L G+ EG WWVQD +A++P +L          LDLCA
Sbjct: 170 RLGGTSLMPGHVRLPRG-QAVETLAGYEEGAWWVQDLAAALPARLLGQPQGAGRALDLCA 228

Query: 251 APGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV 310
           APGGKT Q+  +G +VTALD S RRLE+L  NL+R  L A  +   DA  + P+  FDA+
Sbjct: 229 APGGKTLQIAAAGWQVTALDKSARRLERLSANLERTGLAATVV-AADALTWEPEAPFDAI 287

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           LVDAPCS+TGT RRHPDVL       I + +  Q  LL +   ++ PGG +V++ CSL+ 
Sbjct: 288 LVDAPCSATGTCRRHPDVLHRM--PAIEELSVLQASLLERAAGWLAPGGTLVYAVCSLEP 345

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           ++ E   +++   +   +  VP+ +    +    +  + EGW+R  P M         G+
Sbjct: 346 EEGEAQARRL---AGQGLTPVPVTADELPA---GLVPTAEGWLRTDPGMF----PEQGGL 395

Query: 431 DGFFAVALRR 440
           DGFFA   RR
Sbjct: 396 DGFFAARWRR 405


>gi|297155758|gb|ADI05470.1| RNA-binding Sun protein [Streptomyces bingchenggensis BCW-1]
          Length = 485

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 97/473 (20%), Positives = 163/473 (34%), Gaps = 51/473 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAF-----RLLSQRDQILVRAIVNVTLRFL 60
             R+++   L  V  +      +L      +       +    RD  L   +V  TLR  
Sbjct: 24  PVRILAFEALRAVDERDAYANLVLPPLLRKARQDSTEAKPFDARDAALATELVYGTLRRQ 83

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
              DA++   +   L      +  +L +   Q+L   +  +A V  +VE A+    +   
Sbjct: 84  GTYDAIIAECVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GR 142

Query: 121 AKLVNSILRRV-------------SREKIELLQRIAGISIIPEWFKERLENF--YGKERV 165
           AK VN++LR+V                  +  + +A +   P W    L +    G   V
Sbjct: 143 AKFVNAVLRKVAANDLDGWLEKVAPPYDEDPEEHLAVVHSHPRWIVSALWDALGGGSAGV 202

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGF 218
             + +A      + L  +    T    + AV   +                    +L   
Sbjct: 203 EDLLEADNERPEVTLVARPGRSTTEELIAAVGEGSALPGRWSPYAVRLAEGGEPGALDAV 262

Query: 219 AEGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR 274
            E    VQD  + +             +   LD CA PGGK A L    A+  A  ++  
Sbjct: 263 REARAGVQDEGSQLVALALANAPLTGPDERWLDGCAGPGGKAALLGALAAERGAALLASE 322

Query: 275 RLEKLRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           +       ++R          +I  D          FD  L D PC+  G +RR P+  W
Sbjct: 323 KQPHRAGLVERALAGNPGPYQVIAADGTRPPWRPGTFDRALADVPCTGLGALRRRPEARW 382

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI---P 387
            R  +D+   A  QR+LL Q +S V+ GG+V ++ CS    ++  VV  VL+        
Sbjct: 383 RRSPEDLAGFAPLQRELLRQALSAVRVGGVVGYATCSPHLAETRAVVDDVLKGRGGPAPA 442

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E +           +         +++ P +         G D  +   LRR
Sbjct: 443 AEWIDARPLMPGVPGLGDGPD----VQLWPHL--------HGTDAMYLALLRR 483


>gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 525

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 111/482 (23%), Positives = 189/482 (39%), Gaps = 65/482 (13%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--IL--------------VRA 51
           R VS+  L  +         LL+ +   S    +S  ++                  V  
Sbjct: 58  RAVSAVRLMRIEYGGAFAD-LLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVSVAD 116

Query: 52  IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109
           +V  T+R+   +D ++  +     +    +  L Q+LR+ V +I+  D+  YAVVD  V 
Sbjct: 117 VVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVR 176

Query: 110 QAKRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKER 155
            AK           VN ILR+              V  +     + +A +   P W   R
Sbjct: 177 LAKVALRP-GAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRR 235

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDI----ETWAHKLNAVMLPTG-------GIR 204
              + G E    +     +     L               +LN++ +P          +R
Sbjct: 236 WVKYLGLEEATTLMTWNNNDPGFSLRANTGRGIARSDLVERLNSLKVPHELSLHLEEFVR 295

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-- 262
           +K   +++V      EG+  VQD SA + V +        ++D CAAPGGKT  +     
Sbjct: 296 IKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLK 355

Query: 263 -GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC--PKKLFDAVLVDAPCSS 318
               + A+DV++ RL  L        +      I  D   +    +  +D VL+DAPCS 
Sbjct: 356 GQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAVTSEVQYDKVLLDAPCSG 415

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G + +  D+ W R  +D+V+    Q  LL      VK GG++++S CS+D +++E  V+
Sbjct: 416 LGVLSKRADLRWNRKLEDMVELTELQDDLLDSASKLVKHGGVLIYSTCSIDPEENEGRVE 475

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             L   P+   + P+ S        +  ++ +G+           + V   +DG FA  L
Sbjct: 476 AFLERHPV-FSIDPVTSFVP-----SSFVTSQGFF--------LSNPVKHSLDGAFAARL 521

Query: 439 RR 440
            R
Sbjct: 522 VR 523


>gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 368

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 172/379 (45%), Gaps = 34/379 (8%)

Query: 86  LRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIE 137
           LR+S+ Q++YLD V + A +  AVE AKR + ++  A +VN +LR + RE         +
Sbjct: 2   LRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKD 60

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--- 194
            ++R+A  +  P W  +   + YG E    + +  + P      V  D  T    +    
Sbjct: 61  PVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLA 120

Query: 195 -----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
                A         ++    ++     F +G   +QD S+ +  +        +VLD C
Sbjct: 121 SEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSC 180

Query: 250 AAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCP 303
           AAPGGKT  +        KV +LD+   ++  ++   +RL L   +   +D     ++  
Sbjct: 181 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFA 240

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FD +LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+
Sbjct: 241 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 300

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C+++K ++E+V++K L+  P   E     +   +  +       EG ++I P      
Sbjct: 301 STCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-- 355

Query: 424 DGVSSGMDGFFAVALRRLI 442
                  DGF+   LR+ +
Sbjct: 356 ------TDGFYIACLRKKV 368


>gi|144900072|emb|CAM76936.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 431

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 171/457 (37%), Gaps = 46/457 (10%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  LL  +         +  L +    +  +  +D+  V   V   LR 
Sbjct: 1   MTP--AARIAAAMELLDEIQASPKPADQISSLYFKSRRY--IGSKDRRAVAETVWRVLRT 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             RID  L+  L      +   L          +++  +     +      A+       
Sbjct: 57  KARIDWWLEA-LDFPADARARVLVD--------MIFQGITPEPDLFQGAHSAR-----PP 102

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             +    +     +               PEW   RL   +G ER+     A      +D
Sbjct: 103 SQEERRLMEALRGKSPFHHAMPAWVKGEFPEWLTPRLTALWG-ERLAQEVAAMRDEAPLD 161

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE---------LPESIVSLPGFAEGVWWVQDASA 230
           L V     T      A+          +            ++V +  + +G+  VQD  +
Sbjct: 162 LRVNTLKATRDEAHIALKKERIPSTPTDISPIGLRLANRVALVQVQAWRDGLIEVQDEGS 221

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   L      ++V D CA  GGKT   A  + +  ++ A DV++ R++K +  L R  
Sbjct: 222 QLVALLTDAQPGMAVADYCAGAGGKTLALAAAMQNKGRLVACDVAEWRVDKAQARLRRAG 281

Query: 288 LYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           ++         E D +       FD VLVDAPC+ TGT RR+PD  W    + +++    
Sbjct: 282 VHNVTRRVIDGESDKWIKRSAGSFDRVLVDAPCTGTGTWRRNPDAKWQLTEETVLELVSR 341

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+ +L      VKPGG ++++ CS+  +++EE V+K L + P    ++P+   +   +  
Sbjct: 342 QQAILTSAARLVKPGGRMIYATCSILPEENEEQVEKFLAAHP-DFRVLPVPGLWGDLVGT 400

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           A  +         P    ++     G DGFFA  L +
Sbjct: 401 ACPV---------PGPYLRLSPYGHGTDGFFAAVLEK 428


>gi|23016738|ref|ZP_00056491.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 455

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/457 (20%), Positives = 173/457 (37%), Gaps = 37/457 (8%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +LS + +       +    +    +  +  +D+  V   V   LR 
Sbjct: 16  MTP--AARLQAAIEVLSEIEKSAKPADSVASFYFKQRRY--IGAKDRRAVAETVWRVLRR 71

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             R+D  L+ +     P  +       RV +A +++  +     +      A   +    
Sbjct: 72  RARLDWWLEHLDHPERPNAEGKGGARARV-LADMIFEGIKPEPDLFKGPHSAYPPEPPER 130

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
               + +  + +    +    R       P+W   RL   +G + + A   A      +D
Sbjct: 131 RVLDMLAGQKSLFHRDMPPHVRGE----YPQWLTPRLTALFG-DNLDAEMGAMRDEAPLD 185

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230
           L V       E     L    + +    L            +V +  +  G+  VQD  +
Sbjct: 186 LRVNTLKATREEAIRALAKEGIKSQPTALSPIGLRLGTRVPLVQVQAWRNGLIEVQDEGS 245

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   L       +V+D CA  GGKT   A  + +  ++ A DV++ R+++ +  L R  
Sbjct: 246 QLVALLTDPKPGQAVVDYCAGAGGKTLALAAAMQNKGRLVACDVAEWRVDRAQDRLRRAG 305

Query: 288 LYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           ++         E D +       FD VLVDAPC+ TGT RR+PD  W     D+ +    
Sbjct: 306 VHNVTRRVIEGESDKWIKRSAASFDRVLVDAPCTGTGTWRRNPDAKWQFGETDLEELVVR 365

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L       KPGG +V++ CS+ ++++E+ ++  L + P     VP+   +      
Sbjct: 366 QGAILESAARLTKPGGRLVYATCSIMREENEDRIEAFLAAHP-DYRPVPVPEIWADLAGT 424

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +         P    ++   + G DGFFA  L +
Sbjct: 425 PCPV---------PGPWLRLSPQAHGTDGFFAAVLEK 452


>gi|330806740|ref|YP_004351202.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327374848|gb|AEA66198.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 436

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 127/440 (28%), Positives = 198/440 (45%), Gaps = 42/440 (9%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
            + SL   L  +        +  RD+   + +   T R+ PR+ A+   +L         
Sbjct: 17  GKASLNSSLPTQL-----DKVEDRDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKAADA 71

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI---- 136
            ++ LL V + Q+LY  V  +A +   V  A + K+      L+N++LRR  RE      
Sbjct: 72  DVEALLLVGLYQLLYTRVPAHAAIGETVGCADKLKKP-WAKALINAVLRRAQRESETLLA 130

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKL 193
           EL       +  P W ++ L+ F+  E+  AI  A  +   + L V       + +   L
Sbjct: 131 ELEHDPVVRTAHPRWLQKSLKAFWP-EQWEAICAANNAHPPMILRVNRRHHTRDAYLALL 189

Query: 194 NAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
               +P    +      + E P  + +LPGFAEG   VQD +A +   L        VLD
Sbjct: 190 GEAGIPAVPCQYSRDGIVLETPGDVRALPGFAEGWISVQDEAAQLAADLLELAPGQRVLD 249

Query: 248 LCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYC 302
            C APGGKT  ++ +  K   V A+D+  +RL +++ NL+RL L AE I     D   + 
Sbjct: 250 ACCAPGGKTCHILEAEPKLAGVVAVDLEAKRLVRVKENLERLGLEAELIAADGRDTATWW 309

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +LL      ++ GG+++
Sbjct: 310 DGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQGELLDALWPTLEVGGMLL 369

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS    ++ EV++  L  +P   EL   + A  K       L+ EG           
Sbjct: 370 YATCSTLPTENTEVIEAFLARTPGARELDIASQAGLKQPHGRQLLAQEG----------- 418

Query: 423 IDGVSSGMDGFFAVALRRLI 442
                 G DGF+   L ++ 
Sbjct: 419 ------GHDGFYYAKLIKIA 432


>gi|145224311|ref|YP_001134989.1| Fmu (Sun) domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|315444643|ref|YP_004077522.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1]
 gi|145216797|gb|ABP46201.1| Fmu (Sun) domain protein [Mycobacterium gilvum PYR-GCK]
 gi|315262946|gb|ADT99687.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1]
          Length = 462

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 104/454 (22%), Positives = 159/454 (35%), Gaps = 44/454 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V  +       L     D   R ++ RD      +   T R    +DA
Sbjct: 17  PARQAAFDVLRAVSERDSYANLALPALLRD---RRITGRDAAFATELTYGTCRAKGLLDA 73

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       +      L  LLR+   QIL   V D+A V   VEQA  + +    A  VN
Sbjct: 74  VIAAAAGRPVDHIDPILLDLLRLGAYQILRTRVDDHAAVSTTVEQAGLEFDTAR-AGFVN 132

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVLAISD 170
            +LR ++R                     +A +   P W  +   +        + A+  
Sbjct: 133 GVLRTIARRDEADWVAELAPPAATDPVGHLAFVHAHPRWIGQAFADALGARAGELGALLA 192

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +  S   + L  +         A +    +       +         +    E    VQD
Sbjct: 193 SDDSRPEVHLAARPGMLTAAELAEQTGGTVGRYSPYAVYLGDGDPGGVAAVRESRALVQD 252

Query: 228 ASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTA--LDVSKRRLEKLR 280
             + +  +               LDLCA PGGKTA L   G    A    V         
Sbjct: 253 EGSQLVARALTLAPVDGPDGGRWLDLCAGPGGKTALLAALGQPSGATVTAVEPAPRRAEL 312

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
              +   L   D++ +D  +      FD VLVDAPC+  G +RR P+  W R   D+   
Sbjct: 313 VEQNTAGLP-VDVVRVDGRESGLTPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPAL 371

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  QR+LL   I   +PGG+V+++ CS    ++  VV   LR  P  V  +     +  +
Sbjct: 372 AKLQRELLAAAIRLTRPGGVVLYATCSPHLAETAGVVADALRRQP--VTALDTGELFSPA 429

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
            D     S    +++ P           G D  F
Sbjct: 430 TDTGDGPS----VQLWPH--------RHGTDAMF 451


>gi|15837530|ref|NP_298218.1| hypothetical protein XF0928 [Xylella fastidiosa 9a5c]
 gi|46397049|sp|Q9PEV0|RSMB_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|9105851|gb|AAF83738.1|AE003932_2 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 421

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 194/443 (43%), Gaps = 37/443 (8%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           V++ +L+ V+ +  SL   L              RD+ LV AI    LR  P  +A L  
Sbjct: 2   VAARVLALVVDQGRSLKTELAAALPTLE----DVRDRALVEAICFAVLRRRPVYEAALTQ 57

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
            L   L R    L+ LL V  AQ+  L V  YA +   V+ A R     H A  VN++LR
Sbjct: 58  WLARPLGRGDAQLRGLLMVGFAQLDVLKVPPYAALSATVD-ACRVLGWPHRASFVNAVLR 116

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYIDLTV-KFDIE 187
           R  RE++ ++   A     P W  ER+   +G+    +  +    +P+++ + +   D  
Sbjct: 117 RAQRERLPVVSSDAAW---PRWLAERIRADWGELAEAIFDASLKPAPMWLRVNLRYGDRH 173

Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           T+  +L A  L      L            ++ LPGF  G   VQD SA     L     
Sbjct: 174 TYVQRLQAAGLEAVPSGLVPEALALDCSMPVLQLPGFQAGEVSVQDLSAQQVAALLSPAP 233

Query: 242 NLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMD 297
           +  VLD CAAPGGK A          +TALDV  +RL ++    DR+H+ A        D
Sbjct: 234 HARVLDACAAPGGKAAHLLERAPTLCLTALDVDMQRLRRVAETCDRIHVKARLCVADATD 293

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
              +   + FDAVL+DAPCS+TG +RR PDVL  R  +D++     Q +LL      ++P
Sbjct: 294 LAAWWDGEAFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLPLLNIQSRLLDACWRTLRP 353

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+  CS+ + +++  ++  L  +       P ++    +                 
Sbjct: 354 GGVLVYVTCSVLRAENQTQLEAFLARTVDACAEDPGDAYGQPA----------------- 396

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            +  +      G DGFF   L +
Sbjct: 397 GLGRQRLPGEQGGDGFFYARLIK 419


>gi|158313556|ref|YP_001506064.1| Fmu (Sun) domain-containing protein [Frankia sp. EAN1pec]
 gi|158108961|gb|ABW11158.1| Fmu (Sun) domain protein [Frankia sp. EAN1pec]
          Length = 495

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 158/490 (32%), Gaps = 66/490 (13%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARL++  +L  V  +      LL         R LS RD+     +   +LR    +D 
Sbjct: 14  PARLLAWEVLRAVDERGAYANLLLPALLS---GRRLSPRDRGFATELTYGSLRAQGTLDG 70

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH------ 119
           VLD V    +      ++  LR+   Q+L   V   A V   V+  +     R       
Sbjct: 71  VLDTVTSRPVASVDPPVRDALRLGAYQLLSTRVPPRAAVASTVDLVRATCGERPVRFANA 130

Query: 120 ----------FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE--RVLA 167
                      A    ++L        +    +A ++  P W  + + +  G +     A
Sbjct: 131 VLRRVAARIEAAAGDIAVLLSAPDIAEDPAGHLAVVTAHPRWIVDVVLDALGGDVAGAHA 190

Query: 168 ISDACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFA 219
              A  +   + L  +                 L A         +        SLP  A
Sbjct: 191 ALAANDTRPAVHLVARPGRIDAEALVAQAASVGLGARRGAGSPYAVHLDGGDPGSLPAVA 250

Query: 220 EGVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQ--------LIVSGAKV 266
            G   VQD  + +      ++  +       +DLCA PGGK A               + 
Sbjct: 251 AGDASVQDEGSQLVTLALASVPTIGRDTGLTVDLCAGPGGKAALLAALQAVGEPAETMRE 310

Query: 267 TALDVSKRRLEKLRCNLDR-----------LHLYAEDIIEMDAFDYC-PKKLFDAVLVDA 314
            A    +    +L     R               A   +  D         + D VLVD 
Sbjct: 311 PAAGGHRPPPARLLALEPRAARAGLVAASLAGFPAALAVRADGRFPPVRPGMADRVLVDV 370

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G +RR P+  W R   D+      QR+LL+  +  V+PGG V +  CS   +++ 
Sbjct: 371 PCSGLGALRRRPEARWRRTPADVAALVPLQRQLLVAALDLVRPGGAVAYVTCSPHPEETS 430

Query: 375 EVVQKVLRSSPI----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           EVV  + +             P  +           L    ++++ P +         G 
Sbjct: 431 EVVTAIAQQRGDVAILDARRCPPFAGPLFGDGAPGGLGDGPFVQLWPHL--------HGT 482

Query: 431 DGFFAVALRR 440
           D  F   LRR
Sbjct: 483 DAMFLALLRR 492


>gi|313791967|gb|EFS40068.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL110PA1]
 gi|327453314|gb|EGE99968.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL092PA1]
          Length = 458

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 177/459 (38%), Gaps = 37/459 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR  +   L  V          L      +    L+ RD      +V+ T R   
Sbjct: 10  RKADPARRPAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +++     +  + +  ++ +LR++  QIL + V   A V  +V+ A +    R   
Sbjct: 67  TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125

Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            LVN+I RR+S   +E              +A  ++ P W  +  ++  G + V     A
Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L V+  +       +          +   P +   +    EG   +QD  + 
Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244

Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282
           + +                LDLCA PGGK+A            +TA+++ + R + +   
Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304

Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L R       ++  D      PK+ F AVL D PCS  G++RR P+  W R   D+ +  
Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL+  ++  +PGG++ +  CS  + ++ +++     + P+ V   P   A   +I
Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A      I++ P           G D  F   LR+
Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451


>gi|313199965|ref|YP_004038623.1| sun protein [Methylovorus sp. MP688]
 gi|312439281|gb|ADQ83387.1| sun protein [Methylovorus sp. MP688]
          Length = 427

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 105/448 (23%), Positives = 193/448 (43%), Gaps = 39/448 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  +  V+    +L   LD  +  S  R L+ + + + + +    LR   ++ A+
Sbjct: 4   AQQLAAEAVHQVL-TGRNLGVTLDAMF--SRQRSLTPQQRGMTQDLSYGCLRQYGQLQAL 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L+ +L   L  +   L+ LL V++ Q+     A + +VD AV QA    +      L N+
Sbjct: 61  LNQLLQKPL--QDERLRCLLLVAIYQLQQARAASHTIVDQAV-QASAQFKKPWVKGLTNA 117

Query: 127 ILRRVSREKIELLQRIAG-----ISIIPEWFKERLENFYGKER-VLAISDACISPLYIDL 180
           +LR   R++  L++ I           P+W+  +L + Y ++   + ++     P+ + +
Sbjct: 118 VLRNFLRQQDALVKNIDPTDDVARYSYPQWWVNKLRHQYPQDWEAMLLAGNQHPPMTLRV 177

Query: 181 TVKF-DIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             +   +E ++ +L    +      G       P  +  +PGF EG   VQDA A     
Sbjct: 178 NRRHLSVEAYSQQLADAGIAASLLGGSAVTLTQPIPVERIPGFLEGDVSVQDAGAQWAAP 237

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292
           L      + VLD C APGGKT  ++  +   + A+D    RL +   NL RL L A    
Sbjct: 238 LLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVT 297

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               DA  +   + FD +L D PC+++G +RRH D+ W R   D+      Q  +L Q  
Sbjct: 298 GDAADASGWWDSRPFDRILADVPCTASGIVRRHVDIKWLRREADVASFVRQQALILPQLW 357

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +  GG ++++ CS+  +++++ + + L+      +L     A                
Sbjct: 358 QCLAKGGKLLYATCSVFHEENQQQIDRFLQQHADAKQLPLSQDAS--------------- 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
               P          +  DGFF   L++
Sbjct: 403 ----PHARHGQLYPCAAHDGFFYALLQK 426


>gi|270157755|ref|ZP_06186412.1| ribosomal RNA small subunit methyltransferase B [Legionella
           longbeachae D-4968]
 gi|289163976|ref|YP_003454114.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Legionella
           longbeachae NSW150]
 gi|269989780|gb|EEZ96034.1| ribosomal RNA small subunit methyltransferase B [Legionella
           longbeachae D-4968]
 gi|288857149|emb|CBJ10965.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Legionella
           longbeachae NSW150]
          Length = 458

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 198/457 (43%), Gaps = 49/457 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   N RL + ++L+ ++ ++  L+ L+      S             + I     R   
Sbjct: 30  RKKPNERLHALYILTHLLVEKTPLSQLMASSAEVSPM----------TKEICFGFCRHYF 79

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R+ A+ + ++       +  +   L + + Q+ Y+ + DYAVV   V   ++ K+     
Sbjct: 80  RLQAIANCLIHKKPKEIELWV--ALLIGIYQLHYMKLPDYAVVKETVALLEKIKKG-WAK 136

Query: 122 KLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            LVN++LR   R+  E+     +    +   P+W   RL+  +      AI+ A  +   
Sbjct: 137 GLVNAVLRNFCRQHDEILTRLNKDPLFLYGHPQWLLRRLQKDWPNNW-QAITKANEAHPP 195

Query: 178 IDLTVKFDIETWAHKLNAVMLPT---------GGIRLKELPESIVSLPGFAEGVWWVQDA 228
           + L V     +    LN +                 + E P  +  LPGFA+G+  VQD 
Sbjct: 196 MTLRVNLRKISVMEYLNVLKQANITATPHSIAAEAIVLETPCDVHQLPGFAQGLVSVQDG 255

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDR 285
           +A +   L      L VLD C APGGKT  ++          A+D+  +RL+++R NL+R
Sbjct: 256 AAQLATSLLSLKPGLRVLDACCAPGGKTCHILEKEPHLAECVAVDIDSKRLDRVRENLNR 315

Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           LHL+A  +     +   +   KLFD +L+DAPCS+TG IRRH D+   R+ ++I      
Sbjct: 316 LHLHATLLQGDASNPSQWWDGKLFDRILLDAPCSATGVIRRHSDIKLLRNDEEIATITKI 375

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      +  GG++V++ CS+   ++E+ +   ++++P              +   
Sbjct: 376 QHTMLSSLWPLLTKGGLLVYATCSVMLAENEQQIANFIKNNPD---------CNLITKSW 426

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               + +   +I P            MDGFF   L +
Sbjct: 427 PWGHTTKYGQQILPGEQC--------MDGFFYAVLFK 455


>gi|284991542|ref|YP_003410096.1| Fmu (Sun) domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284064787|gb|ADB75725.1| Fmu (Sun) domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 460

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 109/453 (24%), Positives = 172/453 (37%), Gaps = 36/453 (7%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           ARL +  +L  V  +      LL     + A   L +RD      +   TLR    +DAV
Sbjct: 23  ARLTAFDVLDGVSGRDAYANLLLPQLLRERA-ADLGERDAAFATQLAYGTLRATGTLDAV 81

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  ++   L      +  LLR+   Q+L L V  +A VD  V   +        + LVN+
Sbjct: 82  LAPLVSRPLAELDPRVLDLLRLGAYQLLDLRVPAHAAVDTTVALTRAIVGT-GASGLVNA 140

Query: 127 ILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE-RVLAISDACISP 175
           +LR+V+                    A ++  P W  E   +    E  V     A  + 
Sbjct: 141 VLRKVAAGGDRAAWVERLDGDRDQRLALVTDHPRWIVEAWRDALRDEAEVEPALLADDAA 200

Query: 176 LYIDLTVKF-DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
             + L  +    E  A +      P     ++        +P   EG   VQD  + +  
Sbjct: 201 PEVHLVARRVPREQLAAESGGQPGPWSPYAVRLGGGDPARVPSVREGRAAVQDEGSQLAA 260

Query: 235 QLFGTLNNLS----VLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            L             LD+CA PGGK    A +   G ++TA D +  R E +R  L    
Sbjct: 261 LLLARAPLEGPDAAWLDVCAGPGGKSGLLAAVRPEGVRLTAADRAPHRAELVRQALRDED 320

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                + +     + P   FD VL+DAPC+  G +RR P+V W R  DD+      Q  L
Sbjct: 321 DVEVLVADGRTPPWTPGS-FDRVLLDAPCTGLGALRRRPEVRWRRTADDVPPLVELQTAL 379

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L   ++ V+ GG+V +  CS    ++         ++   VE++P+   + +   +A   
Sbjct: 380 LDGALASVRTGGVVAYVTCSPHTDETVA--VVDAAAARDDVEVLPVAPLFPEVPGLARGD 437

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               + ++ P           G D  F   LRR
Sbjct: 438 ----YGQLWPH--------RHGTDAMFMALLRR 458


>gi|88811382|ref|ZP_01126637.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis
           Nb-231]
 gi|88791271|gb|EAR22383.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis
           Nb-231]
          Length = 423

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 193/445 (43%), Gaps = 39/445 (8%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              L  V+    +    L     DS   L   RD+ L + +    LR+  R++A++  +L
Sbjct: 1   MQTLQDVLAHGRT----LPNALADSVAALQDSRDRALCQELCYGVLRWHSRLEALVLNLL 56

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                 +   L  LL + + Q++Y  +  +A V   V+ A+        A  VN++LRR 
Sbjct: 57  EQRPRNRDRDLTLLLELGLYQLMYTQIPPHAAVSATVDTARA-LGKSWAAGWVNAVLRRF 115

Query: 132 SREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
            RE+   LQ      A    +P W  + L   +  +   ++  A  +   + + +     
Sbjct: 116 QRERANRLQAVDLDCATRHAMPPWLLQWLRADWPSDW-QSLVQASNARAPLTVRINRRRR 174

Query: 188 ---TWAHKLNAVMLPTGG------IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
               W  +L+AV L            +      +  LPGFA+G   VQDA+A     L  
Sbjct: 175 DRDAWLAQLSAVSLTGAHLTELPQAIMLSRALPVTELPGFADGEVSVQDAAAQFAAMLLA 234

Query: 239 TLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295
                 VLD CAAPGGKT  +   +   +TALD+  +RL ++  NL RL L A       
Sbjct: 235 LRPKQRVLDACAAPGGKTTHILEQAEVTLTALDIDAQRLTRVAENLARLGLQANLLVGDA 294

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D   +     FD +LVDAPCS TG IRRHPD+ W R   D+   A  Q++LL +    +
Sbjct: 295 TDPASWWDGLTFDRILVDAPCSGTGVIRRHPDIKWLRRPSDLPALAATQQRLLNRLWPLL 354

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
             GG ++++ CS+ + +++ V++  LR     +   P         D+ +  + +   +I
Sbjct: 355 SSGGRLIYATCSVLRAENDAVIESFLRGHGDALVRAP---------DIPLGRALQFGHQI 405

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P   +        MDGF+   L +
Sbjct: 406 LPGERD--------MDGFYYACLEK 422


>gi|262202278|ref|YP_003273486.1| Fmu (Sun) domain-containing protein [Gordonia bronchialis DSM
           43247]
 gi|262085625|gb|ACY21593.1| Fmu (Sun) domain protein [Gordonia bronchialis DSM 43247]
          Length = 460

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 103/461 (22%), Positives = 169/461 (36%), Gaps = 44/461 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR+ +   L  V  +      +L     +   R ++ RD  L   +   T R    IDA
Sbjct: 18  PARVAARDTLRAVRERDAYANLVLPKMLRE---RHITGRDAALATELTYGTARAQGIIDA 74

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++       +      L  +LR+   Q+L   +  +A V  +V+  + +      A  VN
Sbjct: 75  IIAAAAGRPVAEIDGQLLDVLRLGAYQLLRTRIGSHAAVSTSVDLVRAENGM-GPAGFVN 133

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVLAISD 170
           ++LR++S+   ++                +A     P W  E   +        + A   
Sbjct: 134 AVLRKISQRDEDIWVDELAPSVADDIVGHLAFRYAHPRWIAEVFFSALGGSAGLLQAALA 193

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           A      + L  +      E  A      +       +         L    EG   VQD
Sbjct: 194 ADDERPPVHLVARPGFITAEELALASGGEVGDHSPYCVYLPGGDPGELDAVREGFAGVQD 253

Query: 228 ASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCN 282
             + +  +       +       LD+CA PGGK A L        A  V    + + R  
Sbjct: 254 EGSQLVARAVAVAPVVGEDGGRWLDMCAGPGGKAALLGALADINGA-HVDAVEVSEHRAE 312

Query: 283 LDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           L R  +      +   DA        FD +L+DAPCS  G++RR P+  W R   D+ + 
Sbjct: 313 LIRKTVRDLPVHVQVADARAAGLDPGFDRILLDAPCSGLGSLRRRPEARWRRQPADVDEL 372

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QR+LL + +  V+PGG+VV+S CS    ++ EVV  VL   P       +     + 
Sbjct: 373 VVLQRELLTEAVRLVRPGGLVVYSTCSPHPAETVEVVSSVLAEHPD------VEQIDARP 426

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  A  L     +++ P +         G D  F   LRR+
Sbjct: 427 LVPADQLGDGPHVQLWPHL--------HGTDAMFLAVLRRM 459


>gi|77456243|ref|YP_345748.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens
           Pf0-1]
 gi|77380246|gb|ABA71759.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 436

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 121/440 (27%), Positives = 192/440 (43%), Gaps = 42/440 (9%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
            + SL   L  +        +  RD+   + +   T R+ PR+ A+ + +L         
Sbjct: 17  GKASLNSSLPTQL-----DKVEDRDRGFTQDLAFGTARWQPRLSALAEKLLQKPFKAADA 71

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140
            ++ LL V + Q+LY  V  +A +   V  A + K+      L+N++LR   RE   +  
Sbjct: 72  DVEALLLVGLYQLLYTRVPPHAAIGETVGCADKLKKP-WAKGLLNAVLRNAQREHEAIFA 130

Query: 141 RIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKL 193
            +    +     P W ++ L+ F+  E+  AI +A  +   + L V       + +   L
Sbjct: 131 ELERDPVVRTAHPRWLQKSLKAFWP-EQWEAICEANNAHPPMILRVNRRHHSRDAYLGLL 189

Query: 194 NAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
               +                   + SLPGFAEG   VQD +A +   L        VLD
Sbjct: 190 TEAGIAAQPCTFSRDGIVLEAAADVRSLPGFAEGWISVQDEAAQLAADLLDLAPGQRVLD 249

Query: 248 LCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYC 302
            C APGGKT  ++ +      V A+D+  +RL +++ NL+RL L AE I     D   + 
Sbjct: 250 ACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVKENLERLGLNAELIAADGRDTAAWW 309

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             K F  +L+DAPCS+TG IRRHPD+  TR  DDIV  A  Q +LL      ++ GGI++
Sbjct: 310 DGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAQLQGELLDAMWKTLEVGGILL 369

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS    ++ EV+   L  +P   EL    +A  K                 P    +
Sbjct: 370 YATCSTLPTENTEVIGAFLERTPGARELDLATTAGIKQ----------------PH-GRQ 412

Query: 423 IDGVSSGMDGFFAVALRRLI 442
           +     G DGF+   L ++ 
Sbjct: 413 LLAQQGGHDGFYYAKLIKIA 432


>gi|330719303|ref|ZP_08313903.1| 16S rRNA methyltransferase B [Leuconostoc fallax KCTC 3537]
          Length = 411

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 94/425 (22%), Positives = 176/425 (41%), Gaps = 41/425 (9%)

Query: 41  LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VA 99
           +S  D+ L+  +V   ++    +   L+  + +   +    +++LL  ++ Q+ YLD + 
Sbjct: 1   MSDADRRLLTTLVYGVIQHRLTLAYWLEPFVAN--KKLDDWVRELLYTALFQMQYLDKIP 58

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILR-------RVSREKIELLQRIAGISIIPEWF 152
            +AV + ++E AK    +    K V  IL        R      + ++ ++    +P W 
Sbjct: 59  QHAVFNESIEVAK-ILGHVGIRKFVTGILHDISRKGLRDISAIEDNIEALSVKFSLPIWL 117

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG-----GIR 204
            + L    G     ++           + V      ++     L                
Sbjct: 118 IKTLIEQNGLTETQSMLATINDVPRQSVRVNTVLSSVDDVTLSLENEGFSVKKSEVARDA 177

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFG-TLNNLSVLDLCAAPGGKTAQLIVS- 262
           L      +     +  G   +QD SA +PV+      +  ++LD  AAPGGKT Q+    
Sbjct: 178 LVISGGYVAGTKAYQSGWITIQDESAMLPVESLQLNQHVKTILDAAAAPGGKTTQMAQMI 237

Query: 263 --GAKVTALDVSKRRLEKLRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPC 316
              A +TALD+ + +++ ++ N  RL +     A  +   D   +   + FD +LVDAPC
Sbjct: 238 SSEASITALDIHQHKVKLIQDNAKRLGVGDRVEALSLDARDVPSHFAHQQFDRILVDAPC 297

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G +RR P++ + +   D+   A  Q ++L      +   GI+V+S C++ +Q+++ V
Sbjct: 298 SGLGLLRRKPEIRYDKTLADVNHLAELQLEILSAVSQNLAKNGIIVYSTCTILQQENDNV 357

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           V   L+  P   ELV   +A+    D       E  ++I P             DGFF  
Sbjct: 358 VNLFLKEHP-DFELVRTQTAHNLKADR-----EEMTLQIYPHDY--------HTDGFFVA 403

Query: 437 ALRRL 441
             +++
Sbjct: 404 TFQKI 408


>gi|331701497|ref|YP_004398456.1| sun protein [Lactobacillus buchneri NRRL B-30929]
 gi|329128840|gb|AEB73393.1| sun protein [Lactobacillus buchneri NRRL B-30929]
          Length = 443

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 110/464 (23%), Positives = 199/464 (42%), Gaps = 45/464 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK +  N R ++   L             ++     +    +   D+ L   IV   ++ 
Sbjct: 1   MKYTTNNPRQLAVMTLVR-TSNGSYSNLQINAVIQST---SMGPADKGLFTNIVYGVIQH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              ++  L   L     + +  +++LL  ++ Q+ YLD V   A+ D  ++ AK+   + 
Sbjct: 57  RLTLEYQLRPFL-REPEKTEAWVKELLYTAMYQLEYLDRVPKRAIFDETIKIAKQM-GHD 114

Query: 119 HFAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDA 171
              + V  IL ++ R+ +  L  I       +    +P W  E L+   GK +  +I  +
Sbjct: 115 GTRRFVTGILHQMDRQGMPNLDDIQDEKTRLSIEYSVPTWLVEMLDEQLGKPKTASILAS 174

Query: 172 CISPLYIDLTVK---FDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
                   +         +     L     +A         +      I+    F +G+ 
Sbjct: 175 LNKAPKQSVRANLAKISQKDLLADLAKDGYDAEPSQVSSEGIIINDGQIIHSDFFTDGLL 234

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRC 281
            +QD SA +PV+      + +VLD C+APGGKT Q+   +   KV ALD+ K +L+ ++ 
Sbjct: 235 TIQDESAMLPVESMQISPDNNVLDACSAPGGKTTQIASRLKAGKVFALDIHKNKLKTVQR 294

Query: 282 NLDRLHL-YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           N  RL +    +  E+D           LFD++LVDAPCS  G +RR P++ + +   DI
Sbjct: 295 NATRLGVYKQVETFELDARKVDTKFEDGLFDSILVDAPCSGLGLLRRKPEIRYDKTIADI 354

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + +  Q ++L    + VK GG + +S C++ KQ++++V+ K +  +P   E+    +A 
Sbjct: 355 NRLSEIQLQILNAVSAKVKTGGTITYSTCTIVKQENQDVIAKFISENPN-FEITKTKTAN 413

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + D          ++I PD  +         DGFF  +L R 
Sbjct: 414 HLNPDS-------KMVQIYPDDYDS--------DGFFVCSLIRK 442


>gi|317967915|ref|ZP_07969305.1| sun protein [Synechococcus sp. CB0205]
          Length = 441

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 189/466 (40%), Gaps = 59/466 (12%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ +R V+  +L  V          L+ E G      LS +D+ L   +    +R    
Sbjct: 6   PGLASRQVAWQVLQAV-AAGAYADGALERELGRV---SLSPQDRGLATELAYGAIRQRRL 61

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +DA LD +      R+   L+ LL + + Q+L  D +   A V   VE AKR       A
Sbjct: 62  LDAWLDQLGKVPAERQPPKLRWLLHLGLYQLLSSDRIPASAAVSTTVELAKR-GGLSRLA 120

Query: 122 KLVNSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            +VN +LR   R +          + +  +A    +P+W    L  +   E+  A + A 
Sbjct: 121 PVVNGMLRAFLRRQEAGEALPLPGDPVAALAIRQSLPDWLAAALLQWQTPEQAEAFARAS 180

Query: 173 ISPLYIDLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
            +P  +DL V     T                 +     G+ +K     +  LPG+ EG 
Sbjct: 181 NTPPALDLRVNGLRATPEAVQAALAAAGVVAEPIEGLPMGLTIKGRSGDLRHLPGYDEGH 240

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
           W VQD SA     L        VLD CAAPGGK+  L   +    +V ALD  + RL ++
Sbjct: 241 WCVQDRSAQTIAPLLDPKPGERVLDACAAPGGKSTHLAELMGDQGQVLALDRGEARLRRV 300

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
             N DRL L   +    DA +   +       FDA+L+DAPCS  GT+ RH D  W  D 
Sbjct: 301 ARNSDRLGLGCIETRHGDAVELVSEAPELLGQFDALLIDAPCSGLGTLARHADARWRIDP 360

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
             I      QR+LL   +  +KP G +V++ C++  +++ ++++  L+  P         
Sbjct: 361 AAIEGLVTLQRQLLEGLLPLLKPAGRLVYATCTVHPEENGDLLEAFLKDHP--------- 411

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       L  E   ++ P  L            FFA  + R
Sbjct: 412 -----------QLRLEQSFQLWPGQLGGGGDG------FFAARIVR 440


>gi|322434767|ref|YP_004216979.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162494|gb|ADW68199.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 459

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 116/453 (25%), Positives = 186/453 (41%), Gaps = 56/453 (12%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +  +L  V   +     LL  ++ D     LS+ D  L  A+V   LR+  
Sbjct: 51  AKVTPARRAAFEILMLVKAGKGHSDELLHGQWTD----KLSEADTNLTTALVMGVLRWEI 106

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +DA L  +L     R    +   LR+   Q+L++D +  +A +  +VE  +      H 
Sbjct: 107 ALDARLRTLLQRPDQRLAEPVAMALRLGAFQLLHMDRIPAHAALSESVELCRA-AGEPHA 165

Query: 121 AKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
             +VN++LR+         +  E     A     P W  ER    YG++  L I +A  S
Sbjct: 166 TGMVNAVLRKVAALPKPGTKVFETTAAFAERLGHPLWLVERWVENYGRDAALKICEADQS 225

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
                                              E    LP   +G   V + +A    
Sbjct: 226 --------------------------ESGEGGVFSERDAELPSIDDGSRLVAEIAAKALP 259

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL-HLYAE 291
           Q+ G      V D CAAPGGKT        GA+V A DVS +R+ ++   L R  +    
Sbjct: 260 QVEG--RAARVWDCCAAPGGKTLVLAKRAEGAEVLATDVSTKRMGQMESRLKRFKYAKGV 317

Query: 292 DIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                DA         FD VL D PC+ TGT+ R+P++      +++V+ +  QR++L  
Sbjct: 318 TCEVADAAKLPKDMGTFDLVLCDVPCTGTGTLGRNPEIRERLKVEELVRQSQRQREILAA 377

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA-MALSP 409
            +  V  GG +V+S CSL+ +++E VV+ V+        +VP+       + +   +++ 
Sbjct: 378 ALGRVALGGRLVYSTCSLEPEENERVVEAVI---GSAWRVVPIEEMGVTGLAVEMHSMAQ 434

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +G +R  P +         G DGF+AV L R  
Sbjct: 435 DGALRTLPGV--------HGCDGFYAVVLERTA 459


>gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
 gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
          Length = 476

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/472 (23%), Positives = 187/472 (39%), Gaps = 62/472 (13%)

Query: 15  LSCVMRKRISLTCL-------LDLEYGDSAF------RLLSQRDQILVRAIVNVTLRFLP 61
           L  +         L       LD E              L   +  LV   V   +R+  
Sbjct: 17  LMRIEMGGAFSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWKK 76

Query: 62  RIDAVLDFVLISS---LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            +D V+  V         R +  L+Q+LR+   ++L L+V  YAVV+ AV+ A       
Sbjct: 77  YLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLKLEVPAYAVVNEAVKLANAASR-A 135

Query: 119 HFAKLVNSILRRVSREKIELLQRI--------------AGISIIPEWFKERLENFYGKER 164
              KL N++LR V+  K +    +              A I   P W   R  + YG E 
Sbjct: 136 GAGKLANALLRAVASHKEKNTLPVPEVTGNLRSQARALATIHSHPVWMVRRWTDRYGTED 195

Query: 165 VLAISDACISPLYIDLTVK----FDIETWAHKLNAVMLPT-------GGIRLKELPESIV 213
            L + +   +  +  L          +    +L  + +           +R+    + ++
Sbjct: 196 TLKLMEWNNTRPFYALRANNATGTSRDDLIEQLTKLEVSYVKSPLLKDFVRVTSGLQEVL 255

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALD 270
                 +G   VQD S  + V+L        V+D CAAPGGK+  +        KV A+D
Sbjct: 256 RSGLIQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315

Query: 271 VSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPD 327
           ++K RL+ L+ +  +  +     +  +DA D    K    D VL+DAPCS  G + +  D
Sbjct: 316 INKARLQLLKDSAKKAGVSEQVSVYNVDARDMIRGKTGLADRVLLDAPCSGLGVLSKRAD 375

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W R  +   +    Q +LL      V+PGG++V+S CS++  ++ + +   L  +   
Sbjct: 376 LRWRRTLESFEELTKLQDELLDGACKMVRPGGVLVYSTCSIEPDENIDRITSFLARNQNF 435

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           + L PL     + +     +S EG     P         + G+DG FA  LR
Sbjct: 436 I-LEPLEREVPREM-----VSREGCFYSLP--------YTHGIDGAFAAKLR 473


>gi|330976420|gb|EGH76476.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 416

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 115/419 (27%), Positives = 190/419 (45%), Gaps = 23/419 (5%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+ L + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114

Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P+ + 
Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFDI-ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232
           +  + +  + +   LN   L        +       P  + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHNRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDRL L 
Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294

Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +L
Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           L      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +  A
Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413


>gi|213584492|ref|ZP_03366318.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 364

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 108/387 (27%), Positives = 173/387 (44%), Gaps = 39/387 (10%)

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +    L+N +LR+
Sbjct: 1   MSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-LKGLINGVLRQ 59

Query: 131 VSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPLYIDLT-VKFD 185
             R++  LL   A      + P W  +RL+N Y  +    I  +    P+++ +      
Sbjct: 60  FQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPMWLRVNRTHHT 119

Query: 186 IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            + W   L    +                P  + +LPGFAEG   VQDASA         
Sbjct: 120 RDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAP 179

Query: 240 LNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
            N   +LDLCAAPGGKT     +   A V A+D+ ++RL ++  NL RL + A  + + D
Sbjct: 180 QNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLGMKAT-VKQGD 238

Query: 298 AFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                 +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L      
Sbjct: 239 GRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPR 298

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +KPGG +V++ CS+  +++ + ++  L+ +P                ++      EG   
Sbjct: 299 LKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLPGG--EEG--- 353

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
                           DGFF   L + 
Sbjct: 354 ----------------DGFFYAKLIKK 364


>gi|229587594|ref|YP_002869713.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
           fluorescens SBW25]
 gi|229359460|emb|CAY46301.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
           fluorescens SBW25]
          Length = 436

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 126/455 (27%), Positives = 198/455 (43%), Gaps = 40/455 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L  +        +  RD+   + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLNGKASLNSSLPTQL-----DKVEDRDRGFTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+LY  V  +A +   V  A + K+      L+
Sbjct: 56  ALSAKLLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVGCADKLKKP-WAKALL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LRR  RE      EL       +  P W ++ L+ F+  +   +  ++    P+ + 
Sbjct: 115 NAVLRRAQRESEALLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILR 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232
           +  +        +L           +  +          + SLPGFAEG   VQD +A +
Sbjct: 175 VNRRHHSRDAYLQLLTTAGINATPCVYSVDGIVLEAAADVRSLPGFAEGWISVQDEAAQL 234

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289
              L        VLD C APGGKT  ++        V A+D+  +RL ++R NL RL L 
Sbjct: 235 AADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLARLGLS 294

Query: 290 AEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           AE I     D   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +L
Sbjct: 295 AELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRKPDDIAALAALQGEL 354

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      +  GGI++++ CS    ++ EV++  L  +    EL    +A  K       L
Sbjct: 355 LDALWPTLDVGGILLYATCSTLPTENTEVIEAFLARTSGARELDLATTAGIKQPHGRQLL 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + EG                 G DGF+   L ++ 
Sbjct: 415 AQEG-----------------GHDGFYYAKLIKIA 432


>gi|320547878|ref|ZP_08042161.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812]
 gi|320447418|gb|EFW88178.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812]
          Length = 440

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 116/452 (25%), Positives = 199/452 (44%), Gaps = 36/452 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++  +L  V  +       L+ E   +    LSQ+D+ LV  IV  T+     ++ 
Sbjct: 8   QARGLALLVLENVFEEGAYSNIALNQELKHTH---LSQKDKSLVTEIVYGTVARKITLEW 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +    +  LL +S+ Q+LYLD +  +AVV+ AV  AK     +   K V
Sbjct: 65  YLAHYIE-DRDKLDSWVYYLLMLSLYQLLYLDKMPAHAVVNDAVNIAKNRGNKKGAEKFV 123

Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175
           N++LRR+               +R + +  +P W  ++L + +G+ER +AI  +    + 
Sbjct: 124 NAVLRRLTKDDLPNPESIKRKNKRYSVLYSLPVWLVKKLIHQFGEERAVAIMQSLFVRNK 183

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             I +T    +        A       + L ++         FA G   +QD S+ +   
Sbjct: 184 ASIRVTNPDKLAEIEAATGAKPSLLSPVGLVKISGHFAGTDYFANGDITIQDESSQLVTP 243

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-ED 292
                 +  +LD CAAPGGKT  +   ++   +TALD+   +L  +  N  RLH+     
Sbjct: 244 TLNIKGSEKILDACAAPGGKTTHIASYLTDGHITALDLYDHKLALVMDNAKRLHVDDKIS 303

Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              MD     ++     FD +LVDAPCS  G IRR PD+ + ++  D+      Q ++L 
Sbjct: 304 TQRMDATTVHEHFAADTFDKILVDAPCSGIGLIRRKPDIKYNKENQDLTALQEIQLQILD 363

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                ++ GGI+ +S C++  +++ +V+ K L + P        N    K       +  
Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIIK 415

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +G I ITP+  +         DGFF   ++R+
Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439


>gi|320105842|ref|YP_004181432.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4]
 gi|319924363|gb|ADV81438.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4]
          Length = 419

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 194/454 (42%), Gaps = 65/454 (14%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V   +     LL     ++    LS  D+ L   +V  TLR+   ID+
Sbjct: 10  AARTAAFTILHRVASGKGHSDDLLHTMAVNA----LSSEDRNLTTTLVLGTLRWQLAIDS 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +L   L          +   LR+   Q+L LD + D+A ++ +VE A+ +    H A +V
Sbjct: 66  ILRPYLQRPFQEMPAPVLLALRLGTFQLLLLDRIPDHAALNESVELARAN-GAPHAAGMV 124

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           N++LRRV RE   L + +   +  P+W  +R ++ YG     +I++A      I      
Sbjct: 125 NAVLRRVQREGDALKKNLDPEAAHPQWLLDRWKHTYGNRTAHSIAEADQHEPNI------ 178

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                               L   PE+   +   +  +  +  AS+S P           
Sbjct: 179 ------------------PSLFNAPENAQQMDDGSRLIAELTAASSSGPK---------R 211

Query: 245 VLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----A 298
           +LD CAAPGGKT         AK+ A D+S RRL  ++  ++R  L   + +  D     
Sbjct: 212 ILDCCAAPGGKTLVLAARHPDAKIVAADLSPRRLSAMQRRVERAGLPNIETVVADLTAQQ 271

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 + F  +L D PCS TGT+ R+P++  T   ++  + A  QR +L   +S + PG
Sbjct: 272 RSGPFTQPFQLILCDVPCSGTGTLARNPEIRHTIRPEEFARQAERQRAILSTALSLLAPG 331

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRS-----------SPIPVELVPLNSAYWKSIDMAMAL 407
           G +++S CSL+ +++E+VV+ VL             +P+   L   N    +S       
Sbjct: 332 GRLIYSTCSLEPEENEDVVRSVLGQPQHAALKQLDIAPLFARLAKENILSAESATNLRDT 391

Query: 408 SPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  G  +R  P         +   DGFFA  + R
Sbjct: 392 ALRGTTLRTLPG--------THATDGFFAALIER 417


>gi|315604186|ref|ZP_07879252.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313892|gb|EFU61943.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 490

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 167/475 (35%), Gaps = 45/475 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRIDA 65
            R V+  +L  V         +L      +      S RD      +V+ TLR +  +D 
Sbjct: 19  PRRVAYEVLRAVTVDGAFANIILPKALRQARLHGHFSDRDAAFASELVHGTLRAMGWLDW 78

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-------- 117
           V+   +  SL +    +  LLRV   Q+L + V D+A V   V+ A+    +        
Sbjct: 79  VIARHVDRSLSQLDPRVLVLLRVGAHQLLDMRVPDHAAVSATVDVAREHLTDGPVRFINA 138

Query: 118 --RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISD 170
             R   +              +  + +      P W             Y    ++ +  
Sbjct: 139 VLRSITREGPGEREAALEAIEDEDEALGVRYSHPSWMVRAFREALVAHGYPAGELIDVLK 198

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVML---------PTGGIRLKELPESIVSLPGFAEG 221
           A      + L  +  + T     +                   +         LP   +G
Sbjct: 199 ADNEVPTVTLVARPSLMTVDELADEAEDVLDTRVAFGTVSPYAVLLESGDPARLPSIRDG 258

Query: 222 VWWVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272
               QD  + +   +  +       +   LDLCA PGGK A         GA+VTA +V 
Sbjct: 259 RCGAQDEGSQLAALIAASAPLDGGRDERWLDLCAGPGGKAAMLAGLAAKVGARVTANEVH 318

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDY------CPKKLFDAVLVDAPCSSTGTIRRHP 326
             R   +        L + +++  D   +       P   FD V+VDAPCS  G++RR P
Sbjct: 319 PHRARLVERTT--RLLDSIEVVSGDGRSFGGGQSAWPLASFDRVIVDAPCSGMGSMRRRP 376

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +  W R   D+ +    Q +L  + ++  +PGG++ +  CS    ++ E V+++ +    
Sbjct: 377 ESRWNRTPADVAELTQLQHELTERAVALTRPGGVLTYVTCSPHAAETREHVERLTQR--G 434

Query: 387 PVELVPLNSAYWKSIDMAMA-LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            VEL+   +         +   +  G I  +     ++     G D  F   +R+
Sbjct: 435 EVELLDTVALANDCCPAPLDVPASAGVIAGSQGRTLQLWDHRFGTDLMFVACMRK 489


>gi|320527282|ref|ZP_08028467.1| ribosomal RNA small subunit methyltransferase B [Solobacterium
           moorei F0204]
 gi|320132306|gb|EFW24851.1| ribosomal RNA small subunit methyltransferase B [Solobacterium
           moorei F0204]
          Length = 405

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 98/442 (22%), Positives = 179/442 (40%), Gaps = 45/442 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+ R    ++L  V R+    + LL           +S+ +  L   I+  T+R    ++
Sbjct: 1   MSVRAEVLNILERVFRQNGFASLLLRR-------ANISKEEMGLASEIIYGTIRNKTLLE 53

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
                         K  +  LL +SV Q+L+LD +  YAV+  AVE A + ++    A L
Sbjct: 54  EQWRPFTKH----VKPRVVALLNMSVYQLLFLDSIPSYAVIFEAVELAGKSEKEFVNAVL 109

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
               +  + +     ++ +A ++  P W  +  +  YG E +  I+     P  +   V 
Sbjct: 110 RKVQVAGLRKPAGNTIEELAVLTSHPLWILQLWKAHYGFETMKEIALHNQEPSLVYGRVN 169

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                         +             +     F++G+  +QD  +   V+    L  +
Sbjct: 170 TLKCKKTEIAQMPDVRMLEDDCFFYAGILQRTELFSKGMVLIQDRHSQKVVRKLDVLPGM 229

Query: 244 SVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD CAAPG KT     L+ +  K+ A D+ + R   +   ++R  +      + DA  
Sbjct: 230 QVLDACAAPGTKTQQIACLMKNQGKIIATDLYEARCNLIDELMNRTGVSIVSTQQNDATI 289

Query: 301 --YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
               PK+ FD +L+DAPCS  G +   P++ W  +   I +    Q  +L     +++ G
Sbjct: 290 AGKFPKESFDRILIDAPCSGLGDLSHKPEIRWHLEPTSIDELVHTQEAILDANAEYLRVG 349

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           GI+V+S C+L+++++E+ ++K L   P  V L                            
Sbjct: 350 GILVYSTCTLNRKENEQQIKKFLVKHPNYVLLEE-------------------------- 383

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
             E +  + +  DGF+   L+R
Sbjct: 384 --ETLFPMENDADGFYYAKLKR 403


>gi|283769599|ref|ZP_06342495.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia
           extructa W1219]
 gi|283103867|gb|EFC05253.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia
           extructa W1219]
          Length = 404

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 153/444 (34%), Gaps = 49/444 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R     +L  V+      +  L     + +           V  +V  TLR    + 
Sbjct: 1   MKEREAIVRILEHVLYDHAYASLSLKQLKIEGSI--------GFVTEVVYGTLRHYKLLQ 52

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
                 +     +       LL +++ Q  ++ V DYA+V+  VE  K  ++    A L 
Sbjct: 53  EQYKPFVKKIKKKMD----VLLVMALYQHHFMKVPDYAIVNSTVELVKSQEKGFVNAVLR 108

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                          + +A     PEW        YG  + L I      P  +      
Sbjct: 109 KIFQSEWIEPMGNNPEDLAIRYSHPEWLIRLWLAQYGLNKTLEILAENQKPSKVYGRYNP 168

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                A K                  +++S   F      VQD  + + V        L 
Sbjct: 169 F---LAKKEELTGFTFYENDCVSYTGNLLSTEAFRNHKVLVQDRHSQMIVPQLDLRRGLK 225

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AF 299
           VLD CA+PG K+ Q    + +  ++ + D+   RL+ L     +           D   F
Sbjct: 226 VLDACASPGTKSQQIATYMCNDGEIISCDIYPHRLKLLDQLASQTGTKIIHSELQDASCF 285

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               ++ FD +L+D PCS  G +   P++ +    + I +    Q K+L    S++K  G
Sbjct: 286 RKDWQQAFDRILLDVPCSGLGDLSHKPEIRYHISPNSIDEIQQLQSKILEVNASYLKEEG 345

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           I+V+S C+L+++++ + +Q+ L      +                     E      P  
Sbjct: 346 ILVYSTCTLNQKENHKQIQQFLNQYEEFIL--------------------EKEKTFFP-- 383

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443
                   +G DGF+   LRR  +
Sbjct: 384 -------KNGSDGFYYAKLRRKRK 400


>gi|154251623|ref|YP_001412447.1| Fmu (Sun) domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154155573|gb|ABS62790.1| Fmu (Sun) domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 433

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/462 (21%), Positives = 156/462 (33%), Gaps = 55/462 (11%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +LS + +       + D     + +     +D+  V  +V   LR 
Sbjct: 1   MTPG--ARLQSAISVLSDIFKSGRPADRVFDTWARSNRYAG--SKDRAAVSDLVFTVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA-KRDKENR 118
              + A +           +      L +   Q           VD     A        
Sbjct: 57  RAELTAAVGS------DDARLLAFAALTLGAEQ----------GVDEVAALADGARHAPE 100

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             +    + L                    PEW     E  +G   +     A +     
Sbjct: 101 PLSPEEQTALS--MAVLPGESAPPWTRFNYPEWLHPEFEAAFGNG-LEREMAAFMERAPT 157

Query: 179 DLTVKF---DIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           DL V       E     L            +          +++ L  F +G+  +QD  
Sbjct: 158 DLRVNTLKMKREKALAALTGEGLSAEATPWSPWGLRLTSRGNVLGLATFRDGIVEIQDEG 217

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   L G      V+DLCA  GGK    A ++ +  ++ A D   RRL  L   + R 
Sbjct: 218 SQLACLLAGAAPGEQVVDLCAGGGGKSLALAAMMKNHGQIYACDTDARRLSGLTPRVRRA 277

Query: 287 HLYAEDIIE--------MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
            +                D          D VLVDAPCS TG  RR P   W+   + ++
Sbjct: 278 GIRNLQTRVLGPFTPDMADKDLAGLASHADCVLVDAPCSGTGAWRRSPGARWSLSPEMLM 337

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q ++L +G   V+PGG +V+  CSL   ++E  V+  L   P      P  S + 
Sbjct: 338 GYRAAQAEVLTRGARLVRPGGRLVYVTCSLLPSENETQVEAFLAVHP-AFTPQPWASNWP 396

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + + +  A     W+R+TP         S+G DGFF   LRR
Sbjct: 397 EHVPLPPAPHGN-WLRLTP--------ASTGTDGFFVAILRR 429


>gi|171778151|ref|ZP_02919408.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283133|gb|EDT48557.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 440

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 115/452 (25%), Positives = 199/452 (44%), Gaps = 36/452 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++  +L  V  +       L+ E        LSQ+D+ LV  IV  T+     ++ 
Sbjct: 8   QARGLALVVLENVFEEGAYSNIALNQELK---QTQLSQKDKSLVTEIVYGTVARKITLEW 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            L   +     +    +  LL +S+ Q+LYLD +  +AVV+ AV  AK     +   K V
Sbjct: 65  YLAHYIE-DRDKLDPWVYYLLMLSLYQLLYLDKMPAHAVVNDAVNIAKNRGNKKGAEKFV 123

Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175
           N++LRR+               +R + +  +P W  ++L + +G++R  AI  +    + 
Sbjct: 124 NAVLRRLTKDDLPNPESIKRKNKRYSVLYSLPVWLVKKLIDQFGEDRAEAIMQSLFVRNK 183

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             I +T    +        A       + L +          FA+G   +QD S+ +   
Sbjct: 184 ASIRVTNPEKLAEIKAATGAEQSTLSPVGLVKTSGHFAGTDYFAQGDITIQDESSQLVAP 243

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292
                 + ++LD CAAPGGKT  +   ++   +TALD+   +L+ +  N  RLH+     
Sbjct: 244 TLNIQGDENILDACAAPGGKTTHMASYLTSGHITALDLYDHKLDLVMDNAKRLHVADKIS 303

Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +MD     ++     FD +LVDAPCS  G IRR PD+ + ++  D       Q ++L 
Sbjct: 304 TQKMDATTVHEHFAPDTFDKILVDAPCSGIGLIRRKPDIKYNKENQDFTALQEIQLQILD 363

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                ++ GGI+ +S C++  +++ +V+ K L + P        N    K       +  
Sbjct: 364 SVCQTLRKGGIITYSTCTIFDKENFQVINKFLETHP--------NFEQVKLSHTQEDIVR 415

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +G I ITP+  +         DGFF   ++R+
Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439


>gi|254497984|ref|ZP_05110747.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii
           LLAP12]
 gi|254352761|gb|EET11533.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii
           LLAP12]
          Length = 426

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 201/459 (43%), Gaps = 53/459 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRF 59
           M    N RL +  +L+ ++  + SL+ L+            S  D   + + I     R 
Sbjct: 1   MNK--NERLHALKILTTLLADKSSLSQLMP-----------SSADVSPMTKEICFGFCRH 47

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             R+ A+ D +L          +   L + + Q+ Y++  DYAVV   V   ++ K+   
Sbjct: 48  YFRLQAIADCLLKKRPKE--AEIWIALLIGLYQLHYMNQPDYAVVKETVALLEKTKK-AW 104

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISP 175
              LVN++LR   R+K ELL +++   +     P+W  +RL+  +  +   AI+ A  + 
Sbjct: 105 AKGLVNAVLRNFCRQKEELLAKLSQDPLFVYGQPQWLLKRLKTDWPNDW-QAIAQANDAH 163

Query: 176 LYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQ 226
             + L V         +   LN   +      +         P  +  LPGFAEG   VQ
Sbjct: 164 PPMTLRVNIRKNSVADYLQALNQAGVEAHAHPVAPDGITLVSPCDVRQLPGFAEGCISVQ 223

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNL 283
           DA+A + V L      L +LD C APGGKT  ++ +        ALDV  +RL +++ NL
Sbjct: 224 DAAAQLAVSLLALKPGLRLLDACCAPGGKTCHILETEPNLSACVALDVDPKRLIRVQENL 283

Query: 284 DRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL+L A  +         +   +LFD +L+DAPCS+TG IRRH D+   R  D+IV   
Sbjct: 284 TRLNLQATLLQGDASTPTTWWDGQLFDRILLDAPCSATGVIRRHSDIKLLRTNDEIVTVT 343

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L      +   G++V++ CS+   ++E+ + + +  +P    L         S 
Sbjct: 344 KIQHTILNSLWPLLAKDGLMVYATCSVISAENEQQIARFVAENPDCKVL---------SG 394

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +     +     +I P           GMDGFF   L +
Sbjct: 395 NWPWGCATGHGQQILPGDQ--------GMDGFFYTVLLK 425


>gi|313898375|ref|ZP_07831912.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           HGF2]
 gi|312956757|gb|EFR38388.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           HGF2]
          Length = 415

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/451 (21%), Positives = 180/451 (39%), Gaps = 51/451 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR ++  +L  +   +     LL      +       +D+ L+  IV  TL+      
Sbjct: 1   MNARGIAYTMLRDICLHKTYSNLLLRKGLNQAK-----PQDKGLITQIVYGTLQNYRLCR 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123
              +  +          +  LL +SV Q+ Y+D    YA+++ AVE  K+   + + AKL
Sbjct: 56  YQWEDCVKKLPSD---EVCVLLDMSVYQLFYMDKLPAYAIINDAVEITKKQI-HGNMAKL 111

Query: 124 VNSILRRVSREKIELLQRI-----AGISIIPEWFKERLENFYGKERVLAISDACIS---P 175
           VN++L  V R     +        A  +  P W  +  +  YG +    I +A +     
Sbjct: 112 VNAVLHAVQRRGKREITGKEEEALAIRTSHPTWLVQMWKAQYGWDNAQKICEADMETKPN 171

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T K   +    + ++               S+ + P +A+G+  +QD ++ +  +
Sbjct: 172 AARVNTWKITRDELMKQDSSFQKGYLSEDALLYDASLAATPWYAQGLLSIQDEASQLIAR 231

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           +        +LD+C+APG K   +   + +   +   D+ + R+E +R    RL +    
Sbjct: 232 IVDPQKGEQILDVCSAPGTKANHMAELMQNDGSIVCGDIHEHRVELIREGAARLGITILK 291

Query: 293 IIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
              MDA +       LFD VL D PCS  G + R  D+     + D+      Q+ +L +
Sbjct: 292 PQVMDATELKEVEGILFDRVLCDVPCSGYGVLARKSDIKVHMQSGDMDTLIPIQKAILAK 351

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               VK  GI+V+S C+L+K+++E+ VQ  L+       +                    
Sbjct: 352 SAEHVKEHGILVYSTCTLNKKENEKQVQAFLKEHENFTLIEE------------------ 393

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                       I   ++  DGF+   L+R+
Sbjct: 394 ----------RTIFPYTAHTDGFYMAKLQRI 414


>gi|20093735|ref|NP_613582.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19886632|gb|AAM01512.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 449

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 107/462 (23%), Positives = 183/462 (39%), Gaps = 44/462 (9%)

Query: 7   AR--LVSSHLLSCVMRKRISLTC-LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           AR   +++  L  VMR +      +L     +        + Q + R++V   LR    +
Sbjct: 6   ARCYALAAKSLIEVMRTKSYPIQYVLRKTLSEY-----DDKTQSVTRSMVYDVLRRYGTL 60

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE-NRHFAK 122
           + V++ V  S LP      + L+ V+  ++LY       V D A   AK     +R    
Sbjct: 61  ERVVEDVSRSELP---PLERALVMVAANEVLYEGKHPAPVTDSATRAAKELGLNHRRVHG 117

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID--- 179
           +V  +      E  + + R+      P WF E+      ++ +  + +    P       
Sbjct: 118 VVADLEEYERPEPEDEIDRLCLEYHHPRWFVEKFGALLDEDELKELMEVHNEPPEYYTFR 177

Query: 180 -LTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--------VSLPGFAEGVWWVQDASA 230
             T   D+E    +              +    +          L  + EG    QD +A
Sbjct: 178 VNTTAADVEDVLREFEEHGFEVERGEYVDYCIRVKKGQPLRLEELECWREGHIVPQDEAA 237

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLH 287
           ++  ++        + DLCAAPGGKT  +           A+DVS+ RL +L    +R+ 
Sbjct: 238 ALVTEILNPQPGERIADLCAAPGGKTTHIAQLTEDEAEILAVDVSRVRLRRLERFAERMV 297

Query: 288 LYAEDIIEMDAF----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
               +++  D      +      FD VL+D PCSS GT+R  PDV W     DI + A  
Sbjct: 298 FENIEVLRADVRRLGRNPRYVGKFDRVLLDPPCSSLGTLRSDPDVKWKIGPRDIRELALK 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVELVPLNSAYWKS 400
           QR+L+      +KPGG++V+S C++  +++E VV + ++     P+ V            
Sbjct: 358 QRQLIRAAARLLKPGGVLVYSTCTITPEENELVVSEAIKRDRLRPVDVRSEFEFLHPPLR 417

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +D   +    G  R+ P +         G  GFF   L++L 
Sbjct: 418 VDGVSSSLEAG--RMWPHV--------HGTTGFFVAKLKKLT 449


>gi|312958118|ref|ZP_07772641.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
 gi|311287549|gb|EFQ66107.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
          Length = 436

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/456 (29%), Positives = 202/456 (44%), Gaps = 42/456 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN RL ++  L+ V+  + SL   L ++        +  RD+   + +   T R+ PR+ 
Sbjct: 1   MNPRLAAAKALAAVLNGKASLNSSLPMQL-----DKVEDRDRGFTQDLAFGTARWQPRLS 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+   +L          ++ LL V + Q+LY  V  +A +   V  A + K+      L+
Sbjct: 56  ALAAKLLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVGCADKLKKP-WAKALL 114

Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N++LRR  RE      EL       +  P W ++ L+ F+  E+  AI  A  +   + L
Sbjct: 115 NAVLRRAQRESEALLAELEHDPVVRTAHPRWLQKSLKAFWP-EQWEAICAANNAHPPMIL 173

Query: 181 TV---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASAS 231
            V       + +   L A  +            + E    + SLPGFAEG   VQD +A 
Sbjct: 174 RVNRRHHGRDAYLQLLTAAGINATPCVYSTDGIVLEAAADVRSLPGFAEGWISVQDEAAQ 233

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288
           +   L        VLD C APGGKT  ++        V A+D+  +RL ++R NL RL L
Sbjct: 234 LAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLARLGL 293

Query: 289 YAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            AE I     D   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +
Sbjct: 294 SAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQGE 353

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      ++ GGI++++ CS    ++ EV++  L  +    EL    +A  K       
Sbjct: 354 LLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTSGARELDLATTAGIKQPHGRQL 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           L  EG                 G DGF+   L ++ 
Sbjct: 414 LVQEG-----------------GHDGFYYAKLIKIA 432


>gi|300784671|ref|YP_003764962.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis
           mediterranei U32]
 gi|299794185|gb|ADJ44560.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis
           mediterranei U32]
          Length = 474

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 163/460 (35%), Gaps = 43/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L+ V  K      +L     +   R ++ RD  L   +   T R    +DA
Sbjct: 32  PARQAAFDVLAAVRTKDAYANLVLPDLLRE---RRITGRDAALATELTYGTSRAQGLLDA 88

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +++      L +   ++   LR+ V Q+L   + ++A V   V+  + +  +       N
Sbjct: 89  IIESCAERPLKQTDPAVLDALRLGVYQLLRTRIPEHAAVTSTVDLVRAEAGS-WATGFAN 147

Query: 126 SILRRVSREKIELLQR-------------IAGISIIPEWFKERLENFYGKERV--LAISD 170
           +ILR+VS +                     A  +  P W         G +     A  +
Sbjct: 148 AILRKVSEKDETTWLDELAPDEAADPIGAYALRTAHPRWIARSFAEALGDKGAGLKAALE 207

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
           A  +   + L  +      +  A             G+RL              E +  V
Sbjct: 208 ADDARPEVHLVARPGEISADELAAITGGDPAPYSPYGVRLPAGAGDPADAEPVRERLAAV 267

Query: 226 QDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLR 280
           QD  + +       +     +   LDLCA PGGK A L    A   A  D  ++   + +
Sbjct: 268 QDEGSQLCAIAATKVPLEGSDERWLDLCAGPGGKAALLGALAAMSGAAVDAVEKAPHRAK 327

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
                       +   D  +   +  +D +LVDAPCS  G +RR P+  W R   D+   
Sbjct: 328 LVEKATTGLPVKVHVGDGRESGLEPGYDRILVDAPCSGLGALRRRPEARWRRQPSDVADL 387

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q +L+      ++PGG + +  CS    ++E V  +  R   +  E+V     +   
Sbjct: 388 TKLQGELITAAYDLLRPGGALTYVVCSPHLAETEGVFAETARR--LKAEVVDAREFFPGV 445

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++        ++++ P           G D  F   LR+
Sbjct: 446 PELGDGP----YVQLWPH--------RHGTDAMFCAVLRK 473


>gi|89067213|ref|ZP_01154726.1| ribosomal RNA small subunit methyltransferase B, putative
           [Oceanicola granulosus HTCC2516]
 gi|89046782|gb|EAR52836.1| ribosomal RNA small subunit methyltransferase B, putative
           [Oceanicola granulosus HTCC2516]
          Length = 432

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 197/377 (52%), Gaps = 16/377 (4%)

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           D +L   L    P    +++  LR++  +I     A + VVD  V+   R      +  L
Sbjct: 70  DRMLKPHLSKRPPD---AVRNALRLATLEI-GEGAAAHGVVDAWVDLVGRHPHTSRYRGL 125

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           VN++LR+++    E   ++  +  +P W +  L   +G   V  +  A  +   +DLT +
Sbjct: 126 VNAVLRKIAEAGPEAWSKL-PVPNLPRWLRRPLAEAWGDRPVQQMERAHFAGAPLDLTAR 184

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
            D    A      +LPTG +RL +    + +LPGFAEG +WVQDA+A++P +L G     
Sbjct: 185 TDPAALAEATGGALLPTGSVRLAQA-GQVTALPGFAEGAFWVQDAAAALPARLLGARPGE 243

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
            VLDLCAAPGGKT Q+  +GA VTALD+S  RL ++  NL R  L A   +  DA  +  
Sbjct: 244 RVLDLCAAPGGKTLQVAATGADVTALDISPDRLARVEENLARCGL-AARTLAGDALAFDE 302

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              +DA+L+DAPCS+TGTIRRHPD+   +D  +  +    Q +LL   ++ ++PGG +VF
Sbjct: 303 GG-WDAILLDAPCSATGTIRRHPDLPHAKDGAEFGRLIELQARLLDHALTLLRPGGRLVF 361

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
             CSL   + E  V++ L +    + ++PL      + +     + EG +R+ PD     
Sbjct: 362 CTCSLLPDEGEVQVEEALAAR-DDIAVLPLPDLPGLAPEWR---TEEGGLRLRPDYW--- 414

Query: 424 DGVSSGMDGFFAVALRR 440
                GMDGF+   L +
Sbjct: 415 -PERGGMDGFYMALLTK 430


>gi|116670233|ref|YP_831166.1| Fmu (Sun) domain-containing protein [Arthrobacter sp. FB24]
 gi|116610342|gb|ABK03066.1| Fmu (Sun) domain protein [Arthrobacter sp. FB24]
          Length = 539

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 163/483 (33%), Gaps = 59/483 (12%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLV+  +L  V  +      +L           L +RD      +    LR     DA
Sbjct: 68  PARLVAFEVLRAVASEDAYANLVLPARIRHH---GLDKRDAGFATELSYGALRGQGTYDA 124

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL   +   L +   ++   LR+   Q+L + V  +A +D  V  A+        + L+N
Sbjct: 125 VLARCVDRPLDQLDPAILDALRIGAHQLLAMRVPAHAALDQTVGLARAVIG-AGPSALIN 183

Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENF-----YGKERVLAI 168
           ++LR+VS   ++              +  +     PEW    L             +  +
Sbjct: 184 AVLRKVSAHTLDEWLELLLSDEQDETRVASIRYAHPEWIVRALRQSLVAHGRPVTEINEL 243

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226
            +A  +   ++L     + +    L                    +  L    EG   VQ
Sbjct: 244 LEADNAAPVVNLVALPGLGSLDEALEGGATAGELVEGSALSSGGDLGRLASVREGSTRVQ 303

Query: 227 DASASIPVQLFGT----------------------LNNLSVLDLCAAPGGKTAQ----LI 260
           D  + +  +                                LDLCA PGGK A       
Sbjct: 304 DVGSQLVARAMAAVDLNSGDLHAPGPESADGQSGAKGGEKWLDLCAGPGGKAALLGALAR 363

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSS 318
             GA + A + +  R + +R  L  +      +   D  D   +    FD VLVD PCS 
Sbjct: 364 QQGATLLANEPAPHRAKLVRQALAAVPHEVWHVRTGDGRDVGTEMAGTFDRVLVDVPCSG 423

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G +RR P+  W R   D+      QR+LL   +  V+PGG+V +  CS    ++  VV 
Sbjct: 424 LGALRRRPESRWRRTPKDLADLGPLQRELLKSALDAVRPGGVVAYVTCSPHPAETTAVVT 483

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             LR       L    +    S+   +    E   ++ P +           D  F   +
Sbjct: 484 DALRKRDDLELLDAGAALDKVSLPGHLEAGHEMTAQLWPHV--------HRTDAMFLALI 535

Query: 439 RRL 441
            + 
Sbjct: 536 HKK 538


>gi|71908772|ref|YP_286359.1| Fmu (Sun)/ nucleolar NOL1/Nop2p [Dechloromonas aromatica RCB]
 gi|71848393|gb|AAZ47889.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Dechloromonas aromatica
           RCB]
          Length = 420

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 110/464 (23%), Positives = 171/464 (36%), Gaps = 70/464 (15%)

Query: 5   MNAR------LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M AR        +  +L  ++R       ++   + D     L   D+  V   V   LR
Sbjct: 1   MKARFTPALFAHAEAVLGQLLRFDHPADAVVSRYFRDHR--ELGHADRAFVAETVFAVLR 58

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
               ++A     +           +  L  ++A                     R    R
Sbjct: 59  RGRSLEARCGGQMS---------DRHRLLAALA-------------------VARGWSQR 90

Query: 119 HFAKLVNSILRRV---SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
             A ++ +         +   E     A    +P+W  +RLE  +G E  L +S A   P
Sbjct: 91  ELAPVLKASEEEWLSGVKAVREEDLPPAVRCDLPDWLYQRLEAQFGAEETLLLSKALNQP 150

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQ 226
             +DL V     + E    KL A  +      L  +   +   P       F EG + VQ
Sbjct: 151 APLDLRVNTLKMNREVLLEKLAADGIAAEAAPLSPMAVRLRDKPALAKTALFLEGAYEVQ 210

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283
           D  + +   L        V+D CA  GGKT     L+ +  ++ A DVS +RL  L+  L
Sbjct: 211 DEGSQLLGYLMEPKRGEMVVDFCAGAGGKTLLLGALMRNTGRLYAFDVSDKRLANLKPRL 270

Query: 284 DRLHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            R  L          E D          D VLVDAPCS  GT+RR+PD+ W +    + +
Sbjct: 271 ARSGLSNVHPARIEHERDTKIKRLAGKADRVLVDAPCSGLGTLRRNPDLKWRQSETSVAE 330

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L      V+PGG +V++ CSL   +++E++   L   P    L P ++   K
Sbjct: 331 LTVKQASILEAAAKLVRPGGRLVYATCSLLSAENDEIIAAFLEKHP-DFTLTPASAVLAK 389

Query: 400 SIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                  ++ EG  +R+ P             DGFFA  L +  
Sbjct: 390 -----QDIAYEGDVLRLLPH--------KHNTDGFFAAILDKKA 420


>gi|309776537|ref|ZP_07671518.1| ribosomal RNA small subunit methyltransferase B
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915714|gb|EFP61473.1| ribosomal RNA small subunit methyltransferase B
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 415

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/451 (21%), Positives = 177/451 (39%), Gaps = 51/451 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR ++  +L  +   +     LL      +       +D+ L+  IV  TL+      
Sbjct: 1   MNARGIAFDMLKDIFLHKTYSNLLLRKGLNQAK-----AQDKGLITQIVYGTLQNYRLCR 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123
                 +          +  +L +SV Q+LY+D    YA+++ AV+  K+   +   AKL
Sbjct: 56  YQWMDCVKKLPSD---EVCIVLDMSVYQLLYMDKLPAYAIINDAVDITKKQI-HVKMAKL 111

Query: 124 VNSILRRVSREKIE-----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS---P 175
           VN++L  V R           + +A  +  P W  +  +  YG +    I +A +     
Sbjct: 112 VNAVLHAVERRGEREVTGKQEEILAIKTSHPTWLVQMWKAQYGWDVTQNICEADMETKPN 171

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T K   +       +               S+ + P + +G+  +QD ++ +  +
Sbjct: 172 AARVNTWKITRDALMELDASFQKGYLSEDAVLYDTSLAATPWYEQGLLSIQDEASQLIAR 231

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           +        +LD+C+APG K   +   + +   +   D+   R+E ++   +RL +    
Sbjct: 232 IVDPQRGEQILDVCSAPGTKADHMAELMQNEGCIVCGDIHAHRVELIKEGAERLGITILK 291

Query: 293 IIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
              MDA +       LFD VL D PCS  G + R  D+     + D+      QR +L +
Sbjct: 292 PQVMDATELKEVEGMLFDRVLCDVPCSGYGVLARKSDIKVHMQSTDMDTLIPVQRAILAK 351

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               VK  GI+V+S C+L+K+++E+ +Q  L+  P    L                    
Sbjct: 352 SAHHVKKQGILVYSTCTLNKKENEKQIQLFLKEHPNFKCLEE------------------ 393

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                       I    +  DGF+   L+R+
Sbjct: 394 ----------RTIFPFEAHTDGFYMAKLQRI 414


>gi|114775554|ref|ZP_01451122.1| Sun protein [Mariprofundus ferrooxydans PV-1]
 gi|114553665|gb|EAU56046.1| Sun protein [Mariprofundus ferrooxydans PV-1]
          Length = 404

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 174/385 (45%), Gaps = 20/385 (5%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M  R  +   L+ ++ ++      ++          L  R + L+  +V   LR    ++
Sbjct: 1   MQVRKAAIESLADILVRQRKAEQAMERYGVR-----LDARGRGLLHELVYGVLRRFYSLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A       S       + +  L +   Q+ Y+ V  +A +   V  A   + N      V
Sbjct: 56  ADYSRFCRSKPDD---TARMALLIGTYQLRYMRVPAHAALSETV--AAVMQSNPKAGGFV 110

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           N++LRRVS  +     +    + +P W      + +G E+V A S+A  +   + L +  
Sbjct: 111 NAVLRRVSEHEPPQKLKPNQRAELPRWIYAGWRDAFGAEQVTACSEALKTVPQLSLALFT 170

Query: 185 DIETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
           D + W  ++            T    L      + +LPG+ EG + V D +A   V    
Sbjct: 171 DRDKWLEQVTGMGIDAVAGELTPCAVLLPAGTDVTTLPGYEEGAFTVIDQAAQAAVMALE 230

Query: 239 TLNNL-SVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
            +     +LD+CAAPGGKTA        A + A++++ RR+ +L  NL RL      +I+
Sbjct: 231 PVCRNGVILDICAAPGGKTAMLSHRFPEATILAIELNARRIPRLNENLQRLGCSNVQVIQ 290

Query: 296 MDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
            D  +   P    DA+L+DAPCS++G +RRHPD  +  D   +   A  QR+LL + +  
Sbjct: 291 ADGLNLPLPSLSVDALLLDAPCSASGILRRHPDAKFLHDEQAVETLAALQRRLLSESLRV 350

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQK 379
           +KP   +V++ CS+  Q++E+V+ +
Sbjct: 351 LKPDAAMVYAVCSIHPQENEQVLAE 375


>gi|237745923|ref|ZP_04576403.1| sun family protein [Oxalobacter formigenes HOxBLS]
 gi|229377274|gb|EEO27365.1| sun family protein [Oxalobacter formigenes HOxBLS]
          Length = 418

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 101/445 (22%), Positives = 171/445 (38%), Gaps = 56/445 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L  V++       ++   + + A   L  R++  +   V   LR     + + +    
Sbjct: 13  QVLREVLQFAAPADGVISRYFREHA--KLGMRERGAIAETVYTILRNRLVYNHLSESGTG 70

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S + R       L+ + +A I  +D       +  V      K +R              
Sbjct: 71  SQMRR-------LVLLGLADIYGIDALGGITEEEKVWLDHVMKIDRSRLPKK-------- 115

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                        + +P+W  +RL   YG++    ++    +P  +DL V       E  
Sbjct: 116 -----------MQANLPDWLYDRLVRQYGEDETFRLAKVLNTPAPLDLRVNTLKTKREEA 164

Query: 190 AHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              L  V +                  ++ ++P F EG   VQD  + +  Q+ G     
Sbjct: 165 LKVLKEVPVDCEATPYASSGIRLRKKIALQNMPLFKEGGVEVQDEGSQLLAQIVGAKRGE 224

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296
            V+D CA  GGKT      + +  ++ A DVS +RL K++  L R  L          E 
Sbjct: 225 MVVDFCAGAGGKTLALGTAMRNTGRLYAFDVSDKRLAKMKPRLARSGLSNVHPIQIAHER 284

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D          D VLVD+PCS  GT+RR+PD+ W +  + IV+ A  Q+ +L      VK
Sbjct: 285 DVRIKRLAGKSDRVLVDSPCSGLGTLRRNPDLKWRQTPETIVEMAEKQQAILESAARLVK 344

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V++ CSL + ++E++V   L        LVP+     +            ++++ 
Sbjct: 345 PGGRLVYATCSLLEDENEKIVSGFLAK-DERFVLVPMQKVLKEGKVDLETGD---FLKLL 400

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P             DGFFA    R+
Sbjct: 401 PH--------RHQTDGFFAAVFERV 417


>gi|309810728|ref|ZP_07704536.1| putative ribosomal RNA small subunit methyltransferase B
           [Dermacoccus sp. Ellin185]
 gi|308435359|gb|EFP59183.1| putative ribosomal RNA small subunit methyltransferase B
           [Dermacoccus sp. Ellin185]
          Length = 489

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 164/487 (33%), Gaps = 61/487 (12%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++G  AR  +  +L  V          +           LS RD      +   T+R   
Sbjct: 17  RTGDPARSAALAVLRAVDD-GAYANLEMPKVLTRH---DLSGRDAAFATELALGTIRRQG 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D V++     +  +    +  +LR+ V QIL + V  +A     V  A+    +   A
Sbjct: 73  FYDRVIETGSGRAPSQIDPVVLAVLRLGVHQILSMRVPVHAATSETVALAREHAGS-GAA 131

Query: 122 KLVNSILRRVSREKIELLQ------------RIAGISIIPEWFKERLENFYGKERV---- 165
             VN++LRR      E                 A  +  P W    L       R     
Sbjct: 132 GFVNAVLRRAGERDHETWIADLTRGVDDADEVRAVATSHPRWVVSALRQSLRGHRAAGGD 191

Query: 166 ---------LAISDACISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVS 214
                     A+ +A  +P  + L  +  + T    +   A       +          +
Sbjct: 192 GQASLDDALDALLEADNTPPRVSLVARPGLATVDELVASGAEASDLSPVGAVLPFGDPAN 251

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLN-----------NLSVLDLCAAPGGKTA----QL 259
           +P   +    VQD  + +        +               LDLCA PGGK A      
Sbjct: 252 IPAIRQTRAAVQDEGSQLLALALADADVPPRTASGGDAREDWLDLCAGPGGKAALLGAVA 311

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFD--YCPKKLFDAVLVDA 314
            + G  +   + S+ R + +R  L R  L       I   D  D        +D VL+DA
Sbjct: 312 HLRGDVLYCNEASEHRTDLVRRTL-RALLDDGAEIYIGTGDGRDLGREEPGTYDRVLLDA 370

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PC+  G +RR P+  W R   D+ + +  Q +LL   I   + GG++ ++ CS    ++ 
Sbjct: 371 PCTGLGALRRRPESRWRRQPSDVAQLSALQVELLDSAIDATRAGGVIGYATCSPHPAETL 430

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
            VV +VL      V+            +    +     +++ P +         G D  F
Sbjct: 431 AVVAEVLGRRDDVVQEDAWPLFRDAFDEPIERVGDLPSVQLWPHL--------HGTDAMF 482

Query: 435 AVALRRL 441
              LR+ 
Sbjct: 483 FALLRKK 489


>gi|117928484|ref|YP_873035.1| Fmu (Sun) domain-containing protein [Acidothermus cellulolyticus
           11B]
 gi|117648947|gb|ABK53049.1| Fmu (Sun) domain protein [Acidothermus cellulolyticus 11B]
          Length = 440

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 173/461 (37%), Gaps = 43/461 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  N R ++  +L  V R+      LL      +       RD  L   +V  TLR L
Sbjct: 1   MMATPNPRQIALDVLGAVRRRDAYANLLLPARLDAAGPAG---RDAALATELVYGTLRLL 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
              DAVLD  L     R    ++ +LR+ V Q+L + V  +A V  +VE A+R       
Sbjct: 58  GTYDAVLDRCLPRP-DRLHPRVRDVLRLGVHQLLGMRVDPHAAVYESVELARRT-GGAVA 115

Query: 121 AKLVNSILRRVSREKIELLQRIAG-----------ISIIPEWFKERLENFYGKERV--LA 167
           A+LVN++LRR++   +E                      P W      +    +     A
Sbjct: 116 ARLVNAVLRRIADRDLESWLAEVTPADDPVAALGLRYGHPRWIVAAFADALRGDLADVRA 175

Query: 168 ISDACISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
           +  A  +P  + L  +    T    L   A               +   +    EG   V
Sbjct: 176 LLQANNTPAPVHLAARPGRCTVDELLAAGARPGRWAPTAAILDAGAPGRIAAVREGRAGV 235

Query: 226 QDASASIPVQLFGTLNNLSVL-DLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLR 280
           QD  + +               DLCA PGGKTA    +    GA+V A+D+   R   + 
Sbjct: 236 QDEGSQLVALAAAAPAGAGWWLDLCAGPGGKTALLAAEADRRGARVLAVDLRPHRARLIP 295

Query: 281 CNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            +          +I  D           D VLVD PC+  G +RR P++ W R  DD+  
Sbjct: 296 RD------PRVTVIVADGRRPAWRSGRVDRVLVDVPCTGLGALRRRPELRWRRRPDDVRS 349

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q +LL   +  V+PGG+V ++ CS    ++ +VV +V         L    +    
Sbjct: 350 LQRLQIELLTAALDAVRPGGLVGYATCSPHPAETIDVVHQVADR---VEVLDAREAMVAH 406

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  +   L P  ++++ P             D  F   LRR
Sbjct: 407 ARAVPPDLGPGPFVQLWPH--------RHETDAMFFALLRR 439


>gi|257452795|ref|ZP_05618094.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 440

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 188/443 (42%), Gaps = 37/443 (8%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L   + +       L+  +    F+   + ++  +  +    +R    +D ++   +  
Sbjct: 9   ALLQEVDQGKYSNIALNELFHRKVFK---KGEKNFITEVFYGVIRNKIYLDYMISQKVK- 64

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
               KK  LQQL R+S  QI ++   D  V+   VE AK+       ++ VN +LR   R
Sbjct: 65  --EVKKDWLQQLFRLSFYQIRFMKSDDKGVIWEGVELAKKKYG-VSVSRFVNGVLRNFQR 121

Query: 134 EKIELLQR------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----- 182
             IE  +          +   P+WF E+++     ER + I  +      + + V     
Sbjct: 122 SFIEEEENLKREGREEVLFSYPKWFFEQIKKE-SPERYIEILKSLKRTPLLSVRVNLLKY 180

Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              + E +  K    ++            ++++   F EG   VQDA++ +  +  G   
Sbjct: 181 SCEEFEEYLRKEEIEIIKKVETVYYMKAGNLLNSSEFQEGKIIVQDAASYLAAKNLGAKP 240

Query: 242 NLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              VLD C+APGGKT+   + + +  ++ +LD+   +++ ++ N  +L +     +++DA
Sbjct: 241 GEIVLDTCSAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQENCKKLGITIVQAVKLDA 300

Query: 299 FDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K FD +LVDAPCS  G + + P+ L+ +  ++I +    QR++L+     +K 
Sbjct: 301 RHLSLQGKKFDRILVDAPCSGYGVLAKKPEGLYNKKEENIKELVTLQREILMAAAEVLKV 360

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S C++   +++E  +  L + P    +           ++A      G   I  
Sbjct: 361 GGEMVYSTCTILPAENQENAKWFLETHPNFESI-----QLQIPENVAGTYDECGGFSI-- 413

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                 D     +D F+ +  R+
Sbjct: 414 ------DYQEEVVDSFYMIKWRK 430


>gi|311742368|ref|ZP_07716177.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272]
 gi|311313996|gb|EFQ83904.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272]
          Length = 428

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 168/457 (36%), Gaps = 56/457 (12%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++ H L  V  +   +  +L     +     L  RD      +V+ T+R     DA
Sbjct: 4   PVRAIAFHALRAVDERDAYVNLVLPAMLDEHH---LEGRDAAFATELVHGTVRRQGTYDA 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++  V    L      +   LR+   Q+L + V  +A V   V+  +R+  ++     VN
Sbjct: 61  IIRQVSGRDLASIDPPVLDALRLGAHQLLSMRVPAHAAVSTTVDVVRREIGHKPV-GFVN 119

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENFYGKERVLA--ISDAC 172
           ++LRR+  + ++                A  +  P W    L    G        +  A 
Sbjct: 120 ALLRRIGAQDLDAWVEQVTEGLGPDEALAVRTSHPVWIVRALRTALGGHAAQITKLLTAD 179

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             P  + L  +  +           L +   R+ +      S+P   +G   VQD  + +
Sbjct: 180 NVPPRVTLVARPGLCEPESLPGTPGLLSPHARILDEGGDPGSIPEVRDGRAGVQDEGSQL 239

Query: 233 PVQLFGTLN----NLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
                        +   LD+CA PGGK     A     GA + A +V + R E +R  + 
Sbjct: 240 VALALADAPLEGADGRWLDVCAGPGGKAALLGALARERGAVLVANEVQEHRAELVRLGVR 299

Query: 285 RLHLYAEDIIEMDAF-DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           R  L   ++   D          FD VLVDAPC+  G +RR P+  W R   D+      
Sbjct: 300 R--LDNVEVTVHDGRAGPWEAGSFDRVLVDAPCTGLGALRRRPESRWRRTEADLDLLVPL 357

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +LL + +  V+PGG+VV++ CS   +++ +VV  V                       
Sbjct: 358 QEELLTRALELVRPGGVVVYATCSPHVRETTDVVTAV--------------------TGG 397

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +S     +  P +         G D  F   +RR
Sbjct: 398 RDDVSVLSTHQWWPHI--------DGTDAMFCALVRR 426


>gi|331697235|ref|YP_004333474.1| Fmu (Sun) domain-containing protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951924|gb|AEA25621.1| Fmu (Sun) domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 482

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 112/464 (24%), Positives = 172/464 (37%), Gaps = 47/464 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR+ +  LL+ V  +       +         R        L   +   TLR L  +DA
Sbjct: 37  PARVAAHELLTAVRERDAYANLAMPAILRRHRLRDRDA---ALATELGYGTLRALGLLDA 93

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+       L R +  L   LR+   Q+L   +  +A VD  V+  +    +R  A  VN
Sbjct: 94  VVAACADRPLHRIEPPLVDALRLGAYQLLRTRIPAHAAVDTIVDLVRDRAGSRS-AGFVN 152

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           +ILR+V+ +                     A +   P W  +   +  G    L  + A 
Sbjct: 153 AILRKVAEQDEAAWTAQLAPSVEEDPLGHSAFVHAHPRWIAQAFADALGGTAELDAALAA 212

Query: 173 ISPLYIDLTVKFDIETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                +   +    E  A +L              G+ L+     +  +   AEG+  VQ
Sbjct: 213 DDARPVVHLLARPGEITAEELALVTGGTEAPYSPYGVHLEPGSGDVGDIDAVAEGLAVVQ 272

Query: 227 DASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLE 277
           D  + +                  LDLCA PGGK   L       G  + A++ S+ R +
Sbjct: 273 DEGSQLVALALARAELAGDDGGRWLDLCAGPGGKAVLLGGLVALDGGALAAVERSEHRAD 332

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            +R  +    L              P   FD VLVDAPC+  G +RR P+  W R+ +D+
Sbjct: 333 LVRRAV--DGLPVTVHTADGREAPLPDAAFDRVLVDAPCTGLGALRRRPEARWRRNPEDV 390

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
              A  QR+LL   +  V+PGG+V +  CS    ++  VV  VLR     VE V   +  
Sbjct: 391 AGLARLQRELLTAALRHVRPGGVVAYVTCSPHLSETVGVVGAVLRRH-RDVEKVDARAVL 449

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               D+    +    +++ P           G D  F   LRRL
Sbjct: 450 PGVPDLGDGPA----VQLWPH--------RHGTDAMFVTLLRRL 481


>gi|148906361|gb|ABR16335.1| unknown [Picea sitchensis]
          Length = 558

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/482 (23%), Positives = 180/482 (37%), Gaps = 64/482 (13%)

Query: 8   RLV-SSHLLSCVMRKRISLTCLLDLEYGDS--------------AFRLLSQRDQILVRAI 52
           R   +  LL  + +       L       +                  L  R+  LV  I
Sbjct: 91  RAASAVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLGFRTNPLDARNTRLVTDI 149

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110
           V   +R+   +D ++  +     ++   +  LQQ+LR+ V +I+ L +  YAVV+  V  
Sbjct: 150 VAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEIVKLGMPPYAVVNENVTL 209

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELL--------------QRIAGISIIPEWFKERL 156
             R         +VN ILRRV+ ++ + +              + ++     P W   R 
Sbjct: 210 -ARAALRAGAGNMVNGILRRVASDREKDMLPLPKVEGDDRSKARALSVKYSHPVWMIRRW 268

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDI-----------ETWAHKLNAVMLPTGGIRL 205
             + G+E  + + +   SP    L                 +    +       T  +RL
Sbjct: 269 MTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSRDDLVLLLKKLNVQHELSPHMTEFVRL 328

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262
               +S++      EG+  VQD  A + V +       +++D CAAPGGK   +      
Sbjct: 329 STGLQSVIQAGLLKEGMCAVQDEGAGLVVSVVDPQPGETIIDCCAAPGGKALFMASRLQG 388

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSST 319
              V A+DV++ RL  L        L        D             D VL+DAPCS  
Sbjct: 389 QGSVIAIDVNQGRLRVLEEAAKVQALEGVVNACQDDIRSFAVGASIRADKVLLDAPCSGL 448

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G + + PD+ W R   D+ +    Q +LL      VKPGGI+V+S CS+D  +++E V+ 
Sbjct: 449 GVLCKKPDMRWKRTLKDLEQLILLQDELLDAASLLVKPGGILVYSTCSVDPGENKERVES 508

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            L   P  +                  +S EG+    P            +DG FA  L 
Sbjct: 509 FLTRHPEFIVEA------VHKYVPNEFISEEGFYTSHP--------TKHFLDGAFAARLF 554

Query: 440 RL 441
           R+
Sbjct: 555 RV 556


>gi|297537449|ref|YP_003673218.1| Fmu (Sun) domain-containing protein [Methylotenera sp. 301]
 gi|297256796|gb|ADI28641.1| Fmu (Sun) domain protein [Methylotenera sp. 301]
          Length = 531

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 168/460 (36%), Gaps = 57/460 (12%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +  R  +  +LS ++         L   + ++    L  +++  V   V   LR L
Sbjct: 1   MTPNL-IRQAAV-MLSNLLEFNSPADAKLSEFFRNNR--DLGTKERAFVAESVYGVLRRL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             + AV           +K  L  +LR+         ++   +  +  EQ          
Sbjct: 57  RFLSAVTANDDNDPDDARKLVLAWMLRI-------QGMSIQKIESMLTEQQIEWAHTIKA 109

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
               N  L              A  + + +W  E+L   YG++  L I+ +      +DL
Sbjct: 110 KSTENLPL--------------AVQADVRDWLWEKLVAQYGEKEALTIARSMHDAATLDL 155

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKELPES----------IVSLPGFAEGVWWVQD 227
            V       +    K  A          K               I     F EG   VQD
Sbjct: 156 RVNTIKGTRDDVMAKFIAENTSGESNVTKTPYSPIGLRMPLRLNISRHVMFTEGQIEVQD 215

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
             + I   L      + V D CA  GGKT  +   + +  ++ A DVS++RL  L   L 
Sbjct: 216 EGSQILAHLVAPKRGMMVADFCAGAGGKTLAMGALMRNTGRLYAFDVSEKRLHSLGQRLK 275

Query: 285 RLHLYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R  L   +      E D         FD VLVDAPC+  GT+RR+PD+ W +   D+ + 
Sbjct: 276 RSGLSNLNAQSISSETDPKLKRLNGKFDRVLVDAPCTGLGTLRRNPDLKWRQTPQDLAEL 335

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L +     K GG +++S CSL + ++E++ +  L + P    L        + 
Sbjct: 336 TVKQANILARASKLTKTGGRLIYSTCSLLRDENEQIAENFLATHPDFKLLNAAEILKQQQ 395

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           I++        ++++ P +           DGFFA    +
Sbjct: 396 INLDTGD----YLKLLPHL--------HNTDGFFAAVFEK 423


>gi|312139583|ref|YP_004006919.1| RNA binding sun protein [Rhodococcus equi 103S]
 gi|311888922|emb|CBH48235.1| putative RNA binding Sun protein [Rhodococcus equi 103S]
          Length = 437

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 157/451 (34%), Gaps = 42/451 (9%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V  +      +L     +   R L  RD  L   +     R    +DAV+      
Sbjct: 1   MLRAVRERDAYANLVLPGLLRE---RRLDGRDAALATELAYGAARARGLLDAVIAECAGR 57

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            +      L  +L +   Q+L   +A +A V  +V+  + +      A  VN++LRRVS 
Sbjct: 58  PVEEIDGPLLDVLELGAYQLLRTRIAPHAAVATSVDLVRAEAGP-GKAGFVNAVLRRVSE 116

Query: 134 EKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVL--AISDACISPLYI 178
           +  +                 +A     P+W  +   +  G +      +  A  +   +
Sbjct: 117 KTEDEWVARLAPDAVADPVGHLAFRYAHPKWIAQAFADSLGADAAELKDVLVADDARPGV 176

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            L  +      E  A      + P     +         L    EG+  VQD  + +  +
Sbjct: 177 HLVARPGEISAEELALVTGGEVGPYSPYAVHLDGGDPGLLDAVREGLAGVQDEGSQLVAR 236

Query: 236 LFGTLN-----NLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                          LDLCA PGGK A L    G     LD  +    +           
Sbjct: 237 ALTLAPLEGPDTGRWLDLCAGPGGKAALLGALVGIDGGRLDAVEPAEHRADLVRKTTRDL 296

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             D+   D  +      +D +LVDAPC+  G +RR P+  W R   D+      QR+LL 
Sbjct: 297 PVDVHVADGREPGLDGGYDRILVDAPCTGLGALRRRPEARWRRQPSDVSGLVKLQRELLA 356

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
             +  V+PGG+V++S CS    ++  VV   +R        +          ++      
Sbjct: 357 SALQLVRPGGVVLYSTCSPHVSETVAVVADAVRRHG--AVALDTRELVPGVPNLGDGP-- 412

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +++ P           G D  F  ALRR
Sbjct: 413 --GVQLWPH--------RHGTDAMFMAALRR 433


>gi|77408116|ref|ZP_00784863.1| sun protein [Streptococcus agalactiae COH1]
 gi|77173300|gb|EAO76422.1| sun protein [Streptococcus agalactiae COH1]
          Length = 426

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 199/444 (44%), Gaps = 36/444 (8%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L  V  K       L+     S    LS +D+ LV  IV  T+     ++  L   +  
Sbjct: 2   TLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWYLSHFI-V 57

Query: 74  SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
              + +  +  LL +S+ Q+LYLD + D+A+V+ AV  AK     +   KL+N++LRRVS
Sbjct: 58  DRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVS 117

Query: 133 RE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--LYIDLTVK 183
            E            +R +    +P W  ++L + YG+ R LAI ++        + +T  
Sbjct: 118 SETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDL 177

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              +T    LN          L     +  S   F +G+  +QD S+ +         N 
Sbjct: 178 SQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPTLKVSGND 237

Query: 244 SVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298
            VLD C+APGGKT+ +   ++   VTALD+   +LE +  N  RL L       ++DA  
Sbjct: 238 QVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASK 297

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
             +Y P+  FD +LVDAPCS  G IRR PD+ + +   D       Q  +L      ++ 
Sbjct: 298 AHEYFPEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRK 357

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GGI+ +S C++ ++++ +V++K L + P        N    +       +   G I I+P
Sbjct: 358 GGIITYSTCTIFEEENFQVIEKFLENHP--------NFEQVELSHTQEDIVKRGCISISP 409

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
           +            DGFF   ++R+
Sbjct: 410 EQY--------HTDGFFIGQVKRI 425


>gi|256379230|ref|YP_003102890.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827]
 gi|255923533|gb|ACU39044.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827]
          Length = 478

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 163/459 (35%), Gaps = 42/459 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V ++      +L     +   R ++ RD  L   +   T R    +DA
Sbjct: 36  PARRAALDTLRAVTKRDAYANLVLPGLLRE---RRITGRDAALATELTYGTARARGLLDA 92

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL       L     ++   LR+   Q+L   V  +A V   V+  + D+ +   A   N
Sbjct: 93  VLAACSDRPLAEIDDAVLDALRLGAYQLLRTRVPAHAAVASTVDLVRADRGS-GAAGFAN 151

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVLAISD 170
           ++LRRV+ +                    +A  +  P W  +          E + A   
Sbjct: 152 AVLRRVTGQDEAGWIDEVAPDEESDPIGYLAMSTAHPRWVAQAFAEALGSRGEPLRAALA 211

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELP-ESIVSLPGFAEGVWWVQ 226
           A  +   + L  +      +  A      + P     +          L    E +  VQ
Sbjct: 212 ADDTRPIVHLIARPGEISADELAAITGGDLAPYSPYGVHLADGGDPADLDVVRERLAAVQ 271

Query: 227 DASASIP----VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRC 281
           D  + +      +      +   LDLCA PGGK A L    A   A  D  ++   +   
Sbjct: 272 DEGSQLCALALTRAPLEGTDERWLDLCAGPGGKAALLGALAALSDATLDAVEKTPHRAEL 331

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
                     D+   D  D      +D VLVDAPC+  G +RR P+  W R   D+   A
Sbjct: 332 IRKATIGLPVDVRVADGRDPGLDGGYDRVLVDAPCTGLGALRRRPEARWRRQPSDVAALA 391

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL   +  V+PGG+V +  CS    ++  VV +V R +    E +     +    
Sbjct: 392 KLQRELLTSALDLVRPGGLVAYVVCSPHLAETVGVVAEVARKTG--AERLDTREFFPGVP 449

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++         +++ P           G D  F   LRR
Sbjct: 450 NLGDGPQ----VQLWPH--------EHGTDAMFCAILRR 476


>gi|311113844|ref|YP_003985066.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931]
 gi|310945338|gb|ADP41632.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931]
          Length = 536

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 98/498 (19%), Positives = 167/498 (33%), Gaps = 67/498 (13%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARLV+  +L+ V +       +L           L  RD      +   TLR     DA
Sbjct: 42  PARLVAFEVLNAVAQNDSYANLVLPGTIRAHH---LDHRDAGFATELTYGTLRSQGTYDA 98

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L       L +   +   +LR+ V Q+L + V  +A ++ +V  A+        A  VN
Sbjct: 99  ILAHCADRPLEKIGTTTLIVLRMGVHQLLSMRVPAHAALNQSVALARAQIGG-GPANFVN 157

Query: 126 SILRRVSREKIELLQ------------RIAGISIIPEWFKERLENF-----YGKERVLAI 168
           ++LRRVS    E               + A     P W    +             +  +
Sbjct: 158 AVLRRVSERSREEWYARLEADAKDDTEKFALAKSHPTWIVRSMRQALAAHGRSPAEIQEL 217

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226
            +A      ++L     I           +               +  L    EG    Q
Sbjct: 218 LEADNQAPVVNLIALPGIGDLQEAFEKGAVEGELVEDSALYSAGDLGRLKSVREGTVRAQ 277

Query: 227 DASASIPVQLFGTL----NNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVSKRRLEK 278
           D  + +  +          + + LDLCA P        A     GA+V A + +  R + 
Sbjct: 278 DVGSQLVTRALAAAPLEGQDSAWLDLCAGPGGKAALLAALGAQRGARVVANESAAHRAKL 337

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAPCSSTGTIR 323
           +  +L  L      ++  D  +                 P++ FD VLVD PCS  G +R
Sbjct: 338 VSQSLRPLSPDEYVVLTGDGREISQTLAQNAERLPAGIEPEQKFDRVLVDVPCSGLGALR 397

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R P+  W +   DI      QR+LL       +PGG++ +  CS    +++ +V ++L +
Sbjct: 398 RRPEARWRKSPRDIADLLPLQRQLLEAACEVTRPGGVIAYVTCSPHAAETQNIVAEILET 457

Query: 384 SPIPVELVP--LNSAYWKSIDMAMALSPEGWIRITPDM-------------------LEK 422
             + +      L      S +   AL+ +      P +                     +
Sbjct: 458 GKVRLLDTQSILQRVALPSDEGRSALAGDKAPGYRPQVRLKKSSSVRQEDILDEASTTAQ 517

Query: 423 IDGVSSGMDGFFAVALRR 440
           +     G D  F    R+
Sbjct: 518 LWPHIHGTDAMFLALFRK 535


>gi|307102870|gb|EFN51136.1| hypothetical protein CHLNCDRAFT_8770 [Chlorella variabilis]
          Length = 425

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 173/437 (39%), Gaps = 55/437 (12%)

Query: 44  RDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYA 102
           R    V  +V+   R+  R+D  L  +L    + +    ++  LR+ + ++  L  A + 
Sbjct: 4   RQARGVTELVSGVTRWRRRLDFSLTQLLRGRDVAQLDAPVRNALRLGLYELAELKNATHG 63

Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRR-----------------VSREKIELLQRIAGI 145
           V++  V+  K  + ++  A   N +LR                        +  + +A  
Sbjct: 64  VINSYVDLVKSVQ-HQGAANATNGVLRNVARGLEAGTLPQPPRPAQGMPPQQAAEVLAVG 122

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGI 203
           +  P W  +R    YG    LA+           + L    D E +  +L A        
Sbjct: 123 ASHPTWLVQRWLAQYGPAATLALLKHNNMRPRYALRLAPGVDAEAFCRQL-ARSGVQAAP 181

Query: 204 RLKELPESIVSLPGFAEGVWW-------VQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                 E +    G    +          QD +A + V         ++LD CAAPGGK 
Sbjct: 182 SRYLPREFVTVDRGLQALLVEGLVQRGEAQDEAAGLVVAALDPQPGETLLDACAAPGGKA 241

Query: 257 ---AQLIVSGAKVTALDVSKRRLEKLRCNLDRL-HLYAEDIIEMD--------AFDYCPK 304
              A  +     +TALD+S+ RL  LR    R  H         D             P 
Sbjct: 242 LGAASRMRGRGLITALDLSRSRLAALRHAALRQPHGDMVRTFAADLRRFATLRYRPEGPP 301

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             +D VL+DAPCS TG + +  D+ W R  +++ + A  Q +LL      V PGG++V+S
Sbjct: 302 WQYDRVLLDAPCSGTGVLAKRADLRWRRTPEELRQLAALQGELLDAAAGLVAPGGLLVYS 361

Query: 365 NCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
            CS++++++E+ V   L   P   +E VP  +           L+P+G +R+ P +    
Sbjct: 362 TCSIEQEENEQQVAAFLARQPGYELEAVPAGTGVP-----PQCLAPDGCLRMLPHV---- 412

Query: 424 DGVSSGMDGFFAVALRR 440
                G DG FA  LRR
Sbjct: 413 ----HGTDGAFAARLRR 425


>gi|77413313|ref|ZP_00789508.1| sun protein [Streptococcus agalactiae 515]
 gi|77160627|gb|EAO71743.1| sun protein [Streptococcus agalactiae 515]
          Length = 426

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 199/444 (44%), Gaps = 36/444 (8%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L  V  K       L+     S    LS +D+ LV  IV  T+     ++  L   +  
Sbjct: 2   TLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWYLSHFI-V 57

Query: 74  SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
              + +  +  LL +S+ Q+LYLD + D+A+V+ AV  AK     +   KL+N++LRRVS
Sbjct: 58  DRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVS 117

Query: 133 RE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--LYIDLTVK 183
            E            +R +    +P W  ++L + YG+ R LAI ++        + +T  
Sbjct: 118 SETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDL 177

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              +T    LN          L     +  S   F +G+  +QD S+ +         N 
Sbjct: 178 SQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPTLKVSGND 237

Query: 244 SVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298
            VLD C+APGGKT+ +   ++   VTALD+   +LE +  N  RL L       ++DA  
Sbjct: 238 QVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASK 297

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
             +Y P+  FD +LVDAPCS  G IRR PD+ + +   D       Q  +L      ++ 
Sbjct: 298 AHEYFPEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRK 357

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GGI+ +S C++ ++++ +V++K L + P        N    +       +   G I I+P
Sbjct: 358 GGIITYSTCTIFEEENFQVIEKFLANHP--------NFEQVELSHTQEDIVKRGCISISP 409

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
           +            DGFF   ++R+
Sbjct: 410 EQY--------HTDGFFIGQVKRI 425


>gi|94985598|ref|YP_604962.1| NusB/RsmB/TIM44 [Deinococcus geothermalis DSM 11300]
 gi|94555879|gb|ABF45793.1| rRNA methyltransferase, sun family protein [Deinococcus
           geothermalis DSM 11300]
          Length = 427

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 172/435 (39%), Gaps = 29/435 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++  +L+ V+                 A   L  RD  L   +V  TLRF P ++A
Sbjct: 10  PARALAVRVLTRVLAGETFAAP---ALDAALAEARLPARDAGLATHLVYGTLRFAPMLEA 66

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            L  +L     +     + LL     + L L    +A +   V  A+  +       LVN
Sbjct: 67  ALAPLLR---EKTHSKTRALLLAGAFEKLVLGTPPHAALSEYVNVARMARLAP--PGLVN 121

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           ++LRRV R              +P W  +     YG      ++D               
Sbjct: 122 AVLRRVERPAETE----ETRYALPRWLIDIFRAAYGPRADAVLADQLQPQPLWLSLSDEG 177

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +     + + V     G+    L   +     + +G     + ++   V   G +    V
Sbjct: 178 VRRLEAEGSVVEPGPNGVDRVTLARPLRDTAAYRQGQAQPINPASLSVVDALGEVKGQRV 237

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           LDL    G K A L   GA VT++D+  R+ +  R NL RL L+A+ +   D        
Sbjct: 238 LDLAGGAGVKAAMLAARGAHVTSVDLLARKHDAARANLKRLGLHADFL-THDLTRPLEVP 296

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
               VL+DAPC+ TGT+R HP++        + + A  Q +LL    + V+PGG++V+S 
Sbjct: 297 PAPLVLLDAPCTGTGTLRAHPEIKLRLTPAAVEEMAALQARLLPNAAAVVEPGGLLVYSV 356

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+  Q+ +EVV+  L   P  +      S     + +    + EG + +          
Sbjct: 357 CSVTPQEGQEVVRAFLAEHPEFM------SEPLSDLGLPTVSAGEGVLTV---------- 400

Query: 426 VSSGMDGFFAVALRR 440
              G+DGFF   LRR
Sbjct: 401 PEDGVDGFFIARLRR 415


>gi|320534324|ref|ZP_08034813.1| putative ribosomal RNA small subunit methyltransferase B
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133459|gb|EFW25918.1| putative ribosomal RNA small subunit methyltransferase B
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 463

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 105/472 (22%), Positives = 175/472 (37%), Gaps = 54/472 (11%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ V R       LL           L +RD     A+   TLR   R DA++   
Sbjct: 2   ALEVLTRVRRDDAFANLLLPELLE---TADLDRRDAGFATALTYGTLRLQGRYDAMIAAC 58

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
               L R   ++  +LR+   Q++ + VA +A V   V+ A      R  A  VN+++RR
Sbjct: 59  TDRPLERIDPAVLDILRLGAHQLMGMRVAQHAAVSTTVDLATTSCG-RGAATFVNAVMRR 117

Query: 131 VSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAISDACI 173
           +S + ++                 A     PEW  + L           + + A+  A  
Sbjct: 118 LSGQDLDSWMAALQQNAPDETSALARTQSHPEWIVKALRQALVTHGRSSDELEALLIADN 177

Query: 174 SPLYIDLTVKF------------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
           +   + L  +                  AH +         + +  +      +    + 
Sbjct: 178 TDPEVALCARPGLIAPEALAKVARKADRAHDVEPRPGRISPLAVVMVGGDPGRIEAIRDS 237

Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSK 273
              V+D  +     I         +   LDLCA PGGK     A+    GA++ A +VS 
Sbjct: 238 RAGVEDEGSQLVALIAAHAPLEGRDERWLDLCAGPGGKAALLAARAAQKGAQLLANEVSP 297

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
            R + +R  L  +      +   D  D        +D VLVDAPC+  G++RR P+  W 
Sbjct: 298 HRADLVRSALRAIAPDVVRVRCGDGRDLGRDESGTYDRVLVDAPCTGLGSLRRRPEARWR 357

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSSPIPV 388
           R   D+   A  QR+LL   +  V+ GG+V +  CS    ++  VV+   ++L    +  
Sbjct: 358 RAPGDVTVLAELQRELLASALRAVRRGGVVTYVTCSPHALETTFVVRDVTRLLEREGLRT 417

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           E +       +      A S    +++ P +         G D  F   LRR
Sbjct: 418 EPLHAGDVATRLAPQPPAGSDRETLQLWPHL--------DGTDAMFCALLRR 461


>gi|296269348|ref|YP_003651980.1| Fmu (Sun) domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296092135|gb|ADG88087.1| Fmu (Sun) domain protein [Thermobispora bispora DSM 43833]
          Length = 465

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 163/458 (35%), Gaps = 47/458 (10%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR+ +  LL  V  +      L+         R ++ R+  L   +   TLR L   D +
Sbjct: 30  ARIAAYDLLRAVDERDAYANLLMPTLLR---QRKITGREAALATELAYGTLRGLGTYDEI 86

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +      +       L+  +R+   Q+L   +  +A V   ++  +        ++  N+
Sbjct: 87  IGACGDRAPGELDPPLRDAIRLGAHQLLRTRIPAHAAVSSTIDLIRLRVGP-GPSRYANA 145

Query: 127 ILRRVSREKIELL-------------QRIAGISIIPEWFKERLENF--YGKERVLAISDA 171
           +LR+V+   ++                 +A +   P W      +      +   A  +A
Sbjct: 146 VLRKVAGRTLDEWLAIVAPPKEEDPIGHLAVVHSHPRWIVNAFRDALGGDLDETTAALEA 205

Query: 172 CISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +   + L  +    +    +   A                   +P  AEG   VQD +
Sbjct: 206 DNARPRVALVARPGRCSPDELVAAGAERAAYSPYGCYLTEGDPAEIPAVAEGRAAVQDEA 265

Query: 230 ASIPV---QLFGTLNNLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCN 282
           + +            +   LD+CA PGGK     A     GA++ A DV   R   +R  
Sbjct: 266 SQLVALALTRVPLDEDRRWLDMCAGPGGKAGLLDAIAAERGARLLAADVQHHRARLVRGA 325

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           + R  +    +             FD V++DAPC+  G +RR P+  W R   DI +   
Sbjct: 326 VTRAGV----VQADGTAPPWRPGTFDRVMLDAPCTGLGALRRRPEARWRRRPSDIPELTG 381

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR+LL   +  V+PGG+V +  CS    ++  VV  V   +P   E++       +   
Sbjct: 382 LQRRLLASALEAVRPGGVVAYVTCSPHLAETRVVVGDV---APGRAEVLDAREYLPEVPG 438

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +        + +  P           G D  F   LRR
Sbjct: 439 LGDGP----FAQFWPH--------RHGTDAMFLALLRR 464


>gi|253997585|ref|YP_003049649.1| Fmu (Sun) domain-containing protein [Methylotenera mobilis JLW8]
 gi|253984264|gb|ACT49122.1| Fmu (Sun) domain protein [Methylotenera mobilis JLW8]
          Length = 514

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 172/464 (37%), Gaps = 63/464 (13%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +  R  +  +LS ++         L   + ++    L  +++  V   V   LR L
Sbjct: 1   MTPNL-IRQAAI-VLSNLLTFSSPADAKLSEFFRNNR--DLGTKERAFVAESVYGVLRRL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLR---VSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
             +  V           +K  L  LLR   +S+ ++         +++   ++     + 
Sbjct: 57  RFLSTVTANDENDPDDARKLILAWLLRVQGMSIREL-------EPMLNEQQKEWAHLIKA 109

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +    L  ++                  + + +W  ++L   YG+   L I+ +      
Sbjct: 110 KSTDNLPLAV-----------------QADVRDWLWDKLVAQYGEAEALTIARSMHEQAT 152

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGI----------RLKELPESIVSLPGFAEGVWW 224
           +DL V       +    K  A                         +I     F EG   
Sbjct: 153 LDLRVNTIKGTRDEVLAKFIAENTSGETNVTKTPYSPLGIRMPNRMNIGRHVLFTEGKIE 212

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
           VQD  + +   L      + V D CA  GGKT  +   + +  ++ A DVS++RL  L  
Sbjct: 213 VQDEGSQLLAHLVAAKRGMMVADFCAGAGGKTLAIGALMRNTGRIYAFDVSEKRLHNLGQ 272

Query: 282 NLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            L R  L          E D         FD VLVDAPCS  GT+RR+PD+ W +  +D+
Sbjct: 273 RLKRSGLSNLNAQVISSETDPKLKRLNGKFDRVLVDAPCSGLGTLRRNPDLKWRQTPEDV 332

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    Q  +L +     K GG +V++ CSL   ++E++ ++ L + P    L       
Sbjct: 333 AELNVKQTNILARAAKLTKVGGRLVYATCSLLSDENEKIAEQFLATHPDFKLLNAAEILA 392

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            + I++        ++++ P +           DGFFA    ++
Sbjct: 393 QQQIELDTGD----YLKLLPHL--------HNTDGFFAAVFEKM 424


>gi|163841091|ref|YP_001625496.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954567|gb|ABY24082.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 458

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 170/468 (36%), Gaps = 48/468 (10%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           V+  +L  V +       +L      +    L +RD  L   +    LR     DA++  
Sbjct: 2   VAFEVLRAVSKDNAYANLVLPARIRQNR---LDKRDAGLATELCYGALRGKGTYDAIIAS 58

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
            +   L     ++   LR+   Q+L + +  +A V+  V  A+        A  +N++LR
Sbjct: 59  CVDRPLAEVDEAILDALRLGSHQLLAMRIPPHAAVNQTVGLARAVIG-AGPASFINAVLR 117

Query: 130 RVSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAISDAC 172
           +++ + +                  A     PEW    L             + A+ +A 
Sbjct: 118 KIAAKDLAEWLDELTAGVTDQVKVAAIRQAHPEWIVRALRQSLVAHGRPVTEIDALLEAD 177

Query: 173 ISPLYIDLTVKFDIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
            +   ++L     + + A   +A     P               L    EG+  VQD  +
Sbjct: 178 NAAPVVNLVALPGLGSPAEAFDADFTPGPLAVDSALSSGSDPGRLQSICEGIVRVQDVGS 237

Query: 231 S-------IPVQLFGTLNNLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279
                                 LDLCA PGGK A L       GA + A + ++ R E +
Sbjct: 238 QLVARALASAPVHTKDSAAEKWLDLCAGPGGKAALLAALAAQRGATLLANEPAEHRAELV 297

Query: 280 RCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           R  L  +   A  +   D         + FD +L+DAPCS  G +RR P+  W R   ++
Sbjct: 298 RKALAAVPNTAWKVQVGDGRQIGTSQPETFDRILIDAPCSGLGALRRRPESRWRRTPAEV 357

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + +  QR+LL  G+  +KPGG++ ++ CS    ++  V+  VLR       L       
Sbjct: 358 AELSQLQRELLTAGLEALKPGGVLAYATCSPHPAETIAVITDVLRKRDDLALLDAGEVID 417

Query: 398 WKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALRRL 441
             ++    +  PE  +    ++ P +           D  F   + + 
Sbjct: 418 GVALKPLDSAHPEPGLGKTSQLWPHL--------HATDAMFLALISKK 457


>gi|289705544|ref|ZP_06501936.1| putative ribosomal RNA small subunit methyltransferase B
           [Micrococcus luteus SK58]
 gi|289557773|gb|EFD51072.1| putative ribosomal RNA small subunit methyltransferase B
           [Micrococcus luteus SK58]
          Length = 543

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 109/492 (22%), Positives = 172/492 (34%), Gaps = 66/492 (13%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR V+  ++  V  +      +L      +    L +RD      +   TLR L 
Sbjct: 60  RTSDPARRVAFGVVRAVHAEDAYANLVLPARIRQAR---LDRRDAGFATELAYGTLRGLG 116

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             DA+L   +   L +    +   LR+   Q+L + V  +A +D  V   + +      +
Sbjct: 117 LYDAILTRCVDRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEIG-AGAS 175

Query: 122 KLVNSILRRVSREKIELLQRI-----------AGISIIPEWFKERLEN-----------F 159
             VN++LRRV+   +E                A  +  P W    L              
Sbjct: 176 GFVNAVLRRVAERPLEEWLADVAPADGGDAALAVRASHPVWIVRALRQALAAHRGTRHIA 235

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK-----ELPESIVS 214
                + A+ +A  +P  ++L              A+       RL              
Sbjct: 236 DRDAELAALLEADNAPPVVNLVALPVAGGAEALAAALDDGAEPGRLAPDSALHSGGDAGR 295

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNL-------SVLDLCAAPGGKTAQLIV----SG 263
           LPG  EGV  VQDA + +  +                 LDLCA PGGK A L       G
Sbjct: 296 LPGVREGVLRVQDAGSQLTARALAQAPVPAAAGRAERWLDLCAGPGGKAALLAALAAERG 355

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAPCSST 319
           A + A +V+  R + +R  L  +   A  +   D             FD VLVDAPC+  
Sbjct: 356 ATLVANEVAPHRADLVRQALAAVPADAWTVRVGDGRTIADAPEAASAFDRVLVDAPCTGL 415

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G +RR P+  W R   D+ +    Q +LL   ++ + PGG++ +  CS    ++   VQ 
Sbjct: 416 GALRRRPESRWRRTPADLAELTGLQAELLDAAVTVLAPGGVLAYVTCSPHVAETVVQVQD 475

Query: 380 VLRSSP-----------IPVELVPLNSAYWKSIDMAMALS-PEGWIRITPDMLEKIDGVS 427
           ++R  P             V L  L     +               ++ P          
Sbjct: 476 LVRRHPELELLDAGTALDAVALDDLRLDEAEPAGGPEPGDVVAHTAQLWPH--------R 527

Query: 428 SGMDGFFAVALR 439
            G D  F   LR
Sbjct: 528 HGTDAMFLALLR 539


>gi|118463294|ref|YP_882553.1| Fmu protein [Mycobacterium avium 104]
 gi|118164581|gb|ABK65478.1| Fmu protein [Mycobacterium avium 104]
          Length = 439

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 102/457 (22%), Positives = 165/457 (36%), Gaps = 51/457 (11%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V  +       L     +   R ++ RD      +   T R    +DAV+      
Sbjct: 1   MLRAVSERDAYANLALPALLRE---RGITGRDAAFATELTYGTCRTRGLLDAVIGAAAGR 57

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                   L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN +LRR++ 
Sbjct: 58  PPEAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQA-AIEFDSARAGFVNGVLRRIAG 116

Query: 134 EKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLA--ISDACISPLYI 178
                                 A +   P W  +   +  G        +  +      +
Sbjct: 117 RDERSWVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAAELDAVLASDDERPQV 176

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            L  +         A  +   +       +         L    +G+  VQD  + +  +
Sbjct: 177 HLAARPGALTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRDGLALVQDEGSQLVAR 236

Query: 236 L----FGTLNNLSVLDLCAAPGGKT--------AQLIVSGAKVTALDVSKRRLEKLRCNL 283
                    +    LDLCA PGGKT         +      +VTA++ + RR + +  N 
Sbjct: 237 ALTLAPVDGDCGRWLDLCAGPGGKTALLASLGAQRFSGPQFRVTAVEPAPRRADLVVENT 296

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
               L   +++ +D      +  FD VLVDAPC+  G +RR P+  W R   D+      
Sbjct: 297 R--GLP-VEVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPTLTKL 353

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR+LL   I+  +PGG+V+++ CS    ++  VV   LR  P  V  +     +    D+
Sbjct: 354 QRELLGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHP--VSALDARPLFEPVADL 411

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +++ P           G D  FA ALRR
Sbjct: 412 GDGPH----VQLWPH--------RHGTDAMFAAALRR 436


>gi|288958791|ref|YP_003449132.1| tRNA/rRNA cytosine-C5-methylase [Azospirillum sp. B510]
 gi|288911099|dbj|BAI72588.1| tRNA/rRNA cytosine-C5-methylase [Azospirillum sp. B510]
          Length = 474

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 165/454 (36%), Gaps = 35/454 (7%)

Query: 1   MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL +   LL+ +         ++   + +  +  +  +D+  +  +    LR 
Sbjct: 10  MTP--AARLQAVIDLLTEIDETPRPADAVMSAYFRNRRY--IGSKDRTAIAQMAYAILRR 65

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV--DLAVEQAKRDKEN 117
             R+   ++        R     + L       +L  +     V+      + A     +
Sbjct: 66  HARLGWWIER---GGYERATPRARVL----AYLLLEENRNAGVVLEMFSGGKFAPARLTD 118

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA---CIS 174
              A +       +   ++    R+          +  L + +G E    +  A      
Sbjct: 119 DELALVRALESHTMDHPEMPETVRVECPDWAEAPMRASLGDRFGVEMEKLLEAAPLDLRI 178

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIP 233
                            ++ A +     + L+      + S+  F +G+  +QD  + + 
Sbjct: 179 NPLKANQQSAIKALAKAQITAEVTRWSPLGLRVKGRPPLGSVDAFKDGLVEIQDEGSQMV 238

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
                      V+D CA  GGKT  +   + +  +V A DV  +RL++      R  L+ 
Sbjct: 239 ALAVAPKPGHQVVDFCAGAGGKTLAVAALMKNKGRVVACDVLDKRLKRAAERFRRAGLHN 298

Query: 291 EDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +      E D +    K+ FD VLVDAPCS TGT RR+PD  W +    + +    Q  
Sbjct: 299 IEAHPLTSERDPWVKRHKRKFDRVLVDAPCSGTGTWRRNPDARWRQLGPGLEQLLPLQAN 358

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      VKPGG ++++ CSL   ++E  V+  L++    +  V   +  W   +    
Sbjct: 359 ILDSAARLVKPGGRLIYATCSLLHDENEAQVEAFLQTHHDFI--VKPIAEVWAEEEAGPP 416

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                ++R+TP             DGFFA  L R
Sbjct: 417 PVEGPYLRLTP--------ARHDTDGFFAAVLER 442


>gi|257466839|ref|ZP_05631150.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 440

 Score =  203 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 188/443 (42%), Gaps = 37/443 (8%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L   + +       L+  +    F+   + ++  +  +    +R    +D ++   +  
Sbjct: 9   ALLQEVDQGKYSNIALNELFHRKVFK---KGEKNFITEVFYGVIRNKIYLDYMISQKVK- 64

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
               KK  LQQL R+S  QI ++   D  V+   VE AK+       ++ VN +LR   R
Sbjct: 65  --EVKKDWLQQLFRLSFYQIRFMKSDDKGVIWEGVELAKKKYG-VSVSRFVNGVLRNFQR 121

Query: 134 EKIELLQR------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----- 182
             IE  +          +   P+WF E+++     ER + I  +      + + V     
Sbjct: 122 SFIEEEENLKREGREEVLFSYPKWFFEQIKKE-SPERYIEILKSLKRTPLLSVRVNLLKY 180

Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              + E +  K    ++            ++++   F EG   VQDA++ +  +  G   
Sbjct: 181 SCEEFEEYLRKEEIEIIKKVETIYYTKAGNLLNSSEFQEGKIIVQDAASYLAAKNLGAKP 240

Query: 242 NLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              VLD C+APGGKT+   + + +  ++ +LD+   +++ ++ N  +L +     +++DA
Sbjct: 241 GEIVLDTCSAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQENCKKLGITIVQAVKLDA 300

Query: 299 FDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K FD +LVDAPCS  G + + P+ L+ +  ++I +    QR++L+     +K 
Sbjct: 301 RHLSLQGKKFDRILVDAPCSGYGVLAKKPEGLYNKKEENIKELVTLQREILMAAAEVLKV 360

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S C++   +++E  +  L + P    +           ++A      G   I  
Sbjct: 361 GGEMVYSTCTILPAENQENAKWFLETHPNFESI-----QLQIPENVAGTYDDCGGFSI-- 413

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                 D     +D F+ +  R+
Sbjct: 414 ------DYQEEVVDSFYMIKWRK 430


>gi|111224598|ref|YP_715392.1| hypothetical protein FRAAL5224 [Frankia alni ACN14a]
 gi|111152130|emb|CAJ63857.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 497

 Score =  203 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 158/490 (32%), Gaps = 72/490 (14%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            RL++  +L  V  +      LL      S    L  RD+  V  +    LR    +D +
Sbjct: 21  PRLLAWEVLRAVDERGSYANLLLPSLLAGS---GLPARDRGFVTELAYGALRAQGTLDGL 77

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF------ 120
           LD      +      L+  LR+   Q+L   V   A V   V+  +     R        
Sbjct: 78  LDTATSRPVHDIDPPLRDALRLGAYQLLRTRVPARAAVASTVDLVRATSGERPVRFANAV 137

Query: 121 ----------AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAI 168
                          + L    R + + +  +A ++  P W  E +        +   A 
Sbjct: 138 LRRVATRIAETGGDLATLLGAPRFETDPIGHLAVVTTHPRWIVEVVAEALGDDLDETRAA 197

Query: 169 SDACISPLYIDLTVKFDI--------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
             A  +   + L  +           E     L+A   P     ++        LP  A 
Sbjct: 198 LVADDTRPAVHLVARPGRTDQNRLLAEAAEEGLDAAAGPYSPYAVRLDGGDPARLPAVAS 257

Query: 221 GVWWVQDASASIPVQLFGT-----LNNLSVLDLCAAPGGKT----------------AQL 259
           G   VQD  + +             +    +DLCA PGGK                    
Sbjct: 258 GAAAVQDEGSQLVALALARTPTVGRDRGLTVDLCAGPGGKAALLAGLLTDRSGGGPGFSS 317

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--------EDIIEMDAFDYC-PKKLFDAV 310
             +     A   S   L  L     R  L A          ++  D      P    D V
Sbjct: 318 QPAAPAGLAAPGSGATLLALEPRATRAGLVARSLAGEPRAWVVRADGRAAPLPAGSADRV 377

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           LVD PC+  G +RR P+  W R   D+      Q  LL+  +  V+PGG+V ++ CS   
Sbjct: 378 LVDVPCTGLGALRRRPEARWRRIPGDLAALVPLQSALLVAALDLVRPGGVVAYATCSPHP 437

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++ EVV++V     + V ++       +   +        ++++ P           G 
Sbjct: 438 AETVEVVRQVTGQR-VDVSVLDARLGLPEVDGLGSGP----FVQLWPH--------RHGT 484

Query: 431 DGFFAVALRR 440
           D  F   LRR
Sbjct: 485 DAMFVALLRR 494


>gi|152966927|ref|YP_001362711.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216]
 gi|151361444|gb|ABS04447.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216]
          Length = 486

 Score =  203 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 103/469 (21%), Positives = 175/469 (37%), Gaps = 46/469 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            +R V+  +L  V         +L     D   R L+ RD      +    LR     DA
Sbjct: 28  ASRKVAYEVLRAVSADDAYANLVLPRMLRD---RRLNGRDAAFATELAYGVLRGRGTYDA 84

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L  ++   L      +  +LR+ + Q+L + V D+A V  +V  A+        A L+N
Sbjct: 85  LLATLVDRPLAELDAGVLDVLRMGLHQLLAMRVPDHAAVATSVALARNVVGG-GPAGLIN 143

Query: 126 SILRRVSREKIELL-----------QRIAGISIIPEWFKERLENF-----YGKERVLAIS 169
           ++LR  +   ++               +A     P+W    L        +    +  + 
Sbjct: 144 AVLRSAAGRDLDTWVAEVATTGNEDDDLAVRYSHPQWIVRSLREALRAHGHEAAELTDLL 203

Query: 170 DACISPLYIDLTVKFDIET------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
            A  +P  + +     +         A  L  V        ++ +      L    EG  
Sbjct: 204 VADNTPAQVAVAALPGLSEPADLVRRASFLEVVPGRWSATAVQLVHGDPGQLSLVREGRA 263

Query: 224 WVQDASASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRR 275
            VQD  + I  QL         +   LDLCA PGGK     A     GA++TA++V+  R
Sbjct: 264 RVQDEGSQIVAQLLAAAALEGRDERWLDLCAGPGGKAALLAATAAQRGARLTAVEVAPHR 323

Query: 276 LEKLRCNLDR-LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
            E +R  L          + +           +D VLVDAPC+  G +RR P+  W R  
Sbjct: 324 AELVRSALAAVPGGAEVRVGDGREVGADEPAAYDRVLVDAPCTGLGALRRRPEARWRRTP 383

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIPVELV 391
            D+      QR LL   +  V+PGG+V ++ CS    ++  VV   ++      + V+ +
Sbjct: 384 ADLGALGPLQRDLLASALDAVRPGGVVAYATCSPVLSETRLVVDDAVKAAAKRGVVVQRL 443

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +   + +    + +    +++ P         + G D      LRR
Sbjct: 444 DTPAVLEQVVPGMPSAAAGRAVQLWPH--------THGTDAMHVALLRR 484


>gi|262068291|ref|ZP_06027903.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378029|gb|EFE85547.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           periodonticum ATCC 33693]
          Length = 434

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 196/452 (43%), Gaps = 38/452 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+ + V+  L+   + K      +L+  + +  F   + +++  +  I    LR    +D
Sbjct: 1   MSVKYVAMKLI-AFVDKGSYSNIVLNDAFREFHF---TAKEKAFITEIFYGVLRNKNFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ Q+ ++      VV  A E AK+       +K +
Sbjct: 57  YMIEKNTKV---IKKEWIRNLLRISIYQLTFMSSDAKGVVWEATEIAKKH--GIAISKFI 111

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K          +    +  IP++F + LE  YG E +     +     Y+
Sbjct: 112 NGTLRNYLRNKDLEIKKLHDEKNYEILYSIPKYFCDILEKQYGSENLKQAITSLKKIPYL 171

Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
            + V        + E +  + +  ++             I++   F EG    QDAS+ +
Sbjct: 172 SVRVNKLKYSEEEFEEFLKERDIQIIKKVDSVYYINSGLIINSKEFKEGKIIAQDASSYL 231

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +  G   N  VLD+CAAPGGKTA   + + +  +V A+D+ + + + +  N+ +L + 
Sbjct: 232 AAKNLGAKPNELVLDICAAPGGKTAVLAEEMQNKGEVIAIDIHQHKKKLIEENMKKLGIN 291

Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                 +D        + FD +LVD PCS  G IR+ P++L+T++ ++I + A  Q ++L
Sbjct: 292 IVKATILDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYTKNRENIEELASLQLEIL 351

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +++S C++  Q++ + +++ L+             A     +++    
Sbjct: 352 NSAADILKDGGELIYSTCTIISQENTDNIEQFLKERKEFKV-----KALNIPENVSGEYD 406

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G   I        +     MD F+ + L +
Sbjct: 407 KLGGFSI--------NYREEIMDNFYIIKLVK 430


>gi|218282589|ref|ZP_03488827.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
 gi|218216460|gb|EEC89998.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
          Length = 397

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 174/439 (39%), Gaps = 48/439 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R      L  V+ K +     L           + ++D+ L   I   T++      A  
Sbjct: 2   RKWIWKALDEVVNKDVYSNLYLRNHL-----HEVDEKDRALATRIFYGTIQNYRYCKACW 56

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              + + L      +  LL +S  Q+L+LD V  YA+V+ AV  AK+   N  +A L N+
Sbjct: 57  SKYVKNKL---NPKMDVLLTMSTYQLLFLDKVPSYAIVNDAVNIAKKI--NMKYAGLTNA 111

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYIDLTVKFD 185
           +L +V   + + +   A    +P+W  +   + YG+E+ L ++ A              +
Sbjct: 112 VLHKVKPIETDNM---ALKYSLPDWLYKMWTSQYGQEKALVMAKASVNILPMYVRRNVLN 168

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
                  L+  +     + + +  +       + +G    QD  +    +      N  +
Sbjct: 169 TNESDFDLDMFVRVQDALYIYKGNDYFH-HDYYQKGYMSAQDEGSFEIAKFVDPQENERI 227

Query: 246 LDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD CAAPG K+    +++ +   + A D+   R + +  +  RL +        DA ++ 
Sbjct: 228 LDCCAAPGTKSMAMAEMMHNKGHIDAYDLHAHRKDLIENDAKRLGIDIIHAGVQDATEFK 287

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
              ++D +L D PCS  G + R PD+      +D+      Q  +L     +VK GG +V
Sbjct: 288 SSNMYDRILCDVPCSGYGVLSRKPDIKLHMVPEDMDTLIPLQYSILNNVCQYVKVGGTLV 347

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C+++K+++E+ ++K L++      LV   + +  +                      
Sbjct: 348 YSTCTMNKKENEKQIEKFLKAHK-EFSLVEEKTIFSNATQ-------------------- 386

Query: 423 IDGVSSGMDGFFAVALRRL 441
                   DGF+   L R 
Sbjct: 387 --------DGFYMAKLVRK 397


>gi|114328418|ref|YP_745575.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316592|gb|ABI62652.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 452

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 143/438 (32%), Positives = 222/438 (50%), Gaps = 27/438 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R  +  LL+ V+ +  SL   L+      A   +  RD+     +   TLR L  IDA
Sbjct: 34  PTRDAACRLLNAVLEQHRSLEEALN------ALPPMEPRDRAAAHRLAAATLRRLGTIDA 87

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL+  L    P     ++ +LR+  A +L+LD   +A V  AV+ A++ +    F  L+N
Sbjct: 88  VLEPFLRREPP---APVRDILRLGAAGLLFLDTPPHAAVGTAVDLARQLRL-APFTGLIN 143

Query: 126 SILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           ++LR+V+    E+L    +     P W               AI+ A  +   +DLT++ 
Sbjct: 144 AVLRKVATGGQEMLNGLDSPRLDTPGWLWTAWGRD-----ARAIALAHQTEAPLDLTLRP 198

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            I   A     ++LP G IRL      +  LPGF EG +WVQDA+AS+P +L        
Sbjct: 199 GITPPAE---GILLPNGTIRLPPGT-RVSILPGFEEGAFWVQDAAASLPARLLAAREGEK 254

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP 303
           ++DLCAAPGGKTAQL +SGA+V A++    R+ +LR NL RL L     + +   +    
Sbjct: 255 IVDLCAAPGGKTAQLAMSGAEVIAVEREAVRVPRLRENLARLRLDVQVAVADAAEWTPPA 314

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
             + DA+L+DAPCS+TGTIRRHPDV   +   DI      Q +LL   ++ ++PGG +++
Sbjct: 315 GFVPDAILLDAPCSATGTIRRHPDVPHLKRQRDITALTAQQDRLLAAALAMLRPGGRLIY 374

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM---L 420
           + CS+  ++  + ++  L++ P  V L P        +  A   + EG++R  P +    
Sbjct: 375 AVCSMQPEEGRQRIEHALKTLP-SVTLSPFTVEELAFLPGAR--TAEGYLRTHPGLAFAG 431

Query: 421 EKIDGVSSGMDGFFAVAL 438
            +     +GMDGFFA  L
Sbjct: 432 PEGSPPITGMDGFFAARL 449


>gi|271964331|ref|YP_003338527.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium
           roseum DSM 43021]
 gi|270507506|gb|ACZ85784.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium
           roseum DSM 43021]
          Length = 515

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 105/476 (22%), Positives = 159/476 (33%), Gaps = 59/476 (12%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +  LL  V  +      L+     +   R LS RD  L   +   TLR L   D V
Sbjct: 56  ARNAAYDLLRAVDERDAYANLLMPALLRE---RRLSGRDAGLATELAYGTLRGLGTYDEV 112

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +      +       L   +R+ V Q+L   V  +A V   V+  +        +K  N+
Sbjct: 113 IAACSDRAPEDLDPPLLDAIRLGVHQLLKTRVPPHAAVGTTVDLVRLRVGT-GASKYANA 171

Query: 127 ILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFY--GKERVLAISDA 171
           +LR+V+   +E                 +A     P W    + +      +   A+  A
Sbjct: 172 VLRKVAGRSLEQWLPIVAPDAGEDPVGYLAVAHSHPRWIVTAMRDAVGGDFDETAALLAA 231

Query: 172 CISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
                 + L  +    +    L   A                  S+   AE    VQD +
Sbjct: 232 DNERPRVTLVARPGRASVDELLASGAQRAEYSPYAAYLTEGDPGSIRAVAEARAAVQDEA 291

Query: 230 AS----IPVQLFGTLNNLSVLDLCAAPGGK-------TAQLIVSGAKVTALDVSKRR--- 275
           +        ++     +   LDLCA PGGK             +G    A   S      
Sbjct: 292 SQLVALALTRVPVAGGDTRWLDLCAGPGGKAGLLDAIAVHGGGAGLPDGASGGSPGPVGF 351

Query: 276 ----------LEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRR 324
                     L+  R  L R       +I  D         +FD V+VDAPC+  G +RR
Sbjct: 352 PGGANLLAAELQYHRARLVRQTTREAAVITADGTAPAWRPGVFDRVMVDAPCTGLGALRR 411

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P+  W RD   +      QR+LL   +  V+PGG+V +  CS    ++  VV  VL   
Sbjct: 412 RPEARWRRDPRSLPDLGRLQRELLTSALEAVRPGGVVAYVTCSPHLAETATVVGDVL-RG 470

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              VE +   +   +   +          +  P           G DG F   LRR
Sbjct: 471 RDDVETLDARAYLPEVAGLGEGPHA----QFWPH--------RHGTDGMFLALLRR 514


>gi|83591583|ref|YP_425335.1| tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170]
 gi|83574497|gb|ABC21048.1| tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170]
          Length = 454

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 113/464 (24%), Positives = 181/464 (39%), Gaps = 45/464 (9%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  LL  +         +         F  +  +D+  V A+   TLR 
Sbjct: 1   MTP--AARVQCAIDLLVDIDATNRPADGIASAFVRARRF--MGSKDRRAVTALAWSTLRH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             R+  ++D    +    +   +  LL V        +      V   +   +     + 
Sbjct: 57  RARLSWLIDRFGGTP-KARALVIAHLLVV--------ERQSAEDVR-MLFITRAQHAPQP 106

Query: 120 FAKLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYI 178
                  ++  ++ + +E  +  A +   +P+W    LE  +G ER+     A  +   +
Sbjct: 107 LTDAEERLVDGLAGKPLEFREMPADVRLEVPDWLPPLLEPLFG-ERLEDELRALQAEAPL 165

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           DL V     D E+    L    + T    L           ++     F +G+  VQD  
Sbjct: 166 DLRVNALKSDRESARLALAREQVDTRPGALSPCALRAEGRPNVAITAPFCDGLVEVQDEG 225

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   L      +SVLDLCA  GGKT   A  + +   + A D+S+ RL + +  L R 
Sbjct: 226 SQMVALLCAVAPGMSVLDLCAGAGGKTLALAAGMENKGTLVATDISEGRLARAQTRLQRA 285

Query: 287 HLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            ++      +D     +    K  FD VLVDAPCS TGT RR+PD  W    D I     
Sbjct: 286 GVHNVTRKVLDPETRKWLKRRKASFDVVLVDAPCSGTGTWRRNPDARWKLTPDTISALNA 345

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  LL +  + VKPGG +V++ CSL   ++E  +   L         +P+   + K   
Sbjct: 346 EQSALLDRAAALVKPGGRLVYATCSLLPAENEAQIAAFLERR-DDYRALPVAETWAKVSP 404

Query: 403 MAMALSPE-GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                + +  W+R+TP         S G DGFF   L R  QP+
Sbjct: 405 APYPGAADVSWLRLTP--------ASHGTDGFFVSILER--QPR 438


>gi|217077823|ref|YP_002335541.1| sun protein [Thermosipho africanus TCF52B]
 gi|217037678|gb|ACJ76200.1| sun protein [Thermosipho africanus TCF52B]
          Length = 415

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 183/437 (41%), Gaps = 34/437 (7%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  LL    R+ I  +                  ++   + ++   LR    +D ++D 
Sbjct: 6   IAYRLLRKKFRRGIFSSEFYQAFSY--------VEEKAFFKNLIFGVLRKQEYLDWIIDS 57

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
            L         S++ +LR+   Q+++ +   Y+VV+  VE  ++    + F  LVN++LR
Sbjct: 58  YLKK--RDIPPSIRTILRIGAYQLIFTNKPSYSVVNNCVELVEK----KSFRGLVNAVLR 111

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI--- 186
           ++++      + +      P+W  E  + F   + +L + +    PL     V       
Sbjct: 112 KIAKIGYIEPKELHLKYSHPKWLIEYWKTFLPNDYLLEMLEYNQKPLKTTARVNMRKINR 171

Query: 187 -ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            +     +        GI  + L  +   L  +  G    Q  S+ I   L    +  +V
Sbjct: 172 KDLVLENITFAPHSPVGIIFERLETNPWELEEYKNGYITFQSESSQIIPLLVNYESKENV 231

Query: 246 LDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           LD CAAPGGK   +  +S   +   D  K ++  L    +RL L  + I+  DA +    
Sbjct: 232 LDACAAPGGKATHILEISDVNLYVNDYEKSKISILEEQFERLGLSPKRIMCEDASNLKLD 291

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
            LFD + VDAPC+S GT RR+P+VL  +  ++I++ +  Q+K++     ++   G++++S
Sbjct: 292 NLFDKIFVDAPCTSLGTGRRNPEVLRRQSKNNILELSKLQKKIVSNLWKYLNKFGLLIYS 351

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            C++  +++ +VV++               S Y + +D+   L       I         
Sbjct: 352 TCTVTYEENTQVVKEF--------------SRYAEFVDIREKLEKFNIKYIWDGYGALFY 397

Query: 425 GVSSGMDGFFAVALRRL 441
              +    F+   LR++
Sbjct: 398 PDETLTP-FYVSILRKV 413


>gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
 gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
          Length = 476

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 111/472 (23%), Positives = 186/472 (39%), Gaps = 62/472 (13%)

Query: 15  LSCVMRKRISLTCL-------LDLEYGDSAF------RLLSQRDQILVRAIVNVTLRFLP 61
           L  +         L       LD E              L   +  LV   V   +R+  
Sbjct: 17  LMRIEMGGAFSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWKK 76

Query: 62  RIDAVLDFVLISS---LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            +D V+  V         R +  L+Q+LR+   ++L L+V  YAVV+ AV+ A       
Sbjct: 77  YLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLKLEVPAYAVVNEAVKLANAASR-A 135

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGI--------------SIIPEWFKERLENFYGKER 164
              KL N++LR V+  K +    +  +                 P W   R  + YG E 
Sbjct: 136 GAGKLANALLRAVASHKEKNTLPVPEVIGNLRSQARALGTIHSHPVWMVRRWTDRYGTED 195

Query: 165 VLAISDACISPLYIDLTVK----FDIETWAHKLNAVMLPT-------GGIRLKELPESIV 213
            L + +   +  +  L          +    +L  + +           +R+    + ++
Sbjct: 196 TLKLMEWNNTRPFYALRANNATGTSRDDLIEQLKKLEVSYVKSPLLEDFVRVTSGLQEVL 255

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALD 270
                 +G   VQD S  + V+L        V+D CAAPGGK+  +        KV A+D
Sbjct: 256 RSGLIQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315

Query: 271 VSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPD 327
           ++K RL+ L+ +  +  +     +  +DA D    K    D VL+DAPCS  G + +  D
Sbjct: 316 INKARLQLLKDSAKKAGVSEQVSVYNVDARDMIRGKTGLADRVLLDAPCSGLGVLSKRAD 375

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W R  +   +    Q +LL      V+PGG++V+S CS++  ++ + +   L  +   
Sbjct: 376 LRWRRTLESFEELTKLQDELLDGACKMVRPGGVLVYSTCSIEPDENIDRITSFLARNQNF 435

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           + L PL     + +     +S EG     P         + G+DG FA  LR
Sbjct: 436 I-LEPLEREVPREM-----VSREGCFYSLP--------YTHGIDGAFAAKLR 473


>gi|282866194|ref|ZP_06275241.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE]
 gi|282558978|gb|EFB64533.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE]
          Length = 477

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 97/470 (20%), Positives = 167/470 (35%), Gaps = 45/470 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R ++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 20  PVRFLAFEALRAVDERDAYANLVLPPLLKKARAKGDFDGRDAALATELVYGTLRRQGTYD 79

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  ++ + V Q+L   +  +A V  +VE A+        AK V
Sbjct: 80  AIVAACVDRPLREVDPPVLDVIEMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+VS   ++               + ++ +   P W    L +  G  R     + 
Sbjct: 139 NAVLRKVSAHDLDGWLERVAPAYDEDAEEHLSVVHSHPRWVVSALWDALGGGRAGIEDLL 198

Query: 170 DACISPLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           +A      + L  +               +       +             +L    EG 
Sbjct: 199 EADNERPEVTLVARPGRSTTDELLAALGEESGLAGRWSPYAVRMAEGGEPGALTAVQEGR 258

Query: 223 WWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278
             VQD  + +             +   LD CA PGGK A L    A   A  ++  +   
Sbjct: 259 AGVQDEGSQLVAAALAQAPVEGRDSRWLDGCAGPGGKAALLGALAAARGATLLAAEKQPH 318

Query: 279 LRCNLDR-----LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
               ++R        +     +     + P   FD VL+D PCS  G +RR P+  W R 
Sbjct: 319 RARLVERALAGNPGPHQVITADGTRPPWRPGS-FDRVLMDVPCSGLGALRRRPEARWRRR 377

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVP 392
             D+   A  QR LL + +  V+ GG+V ++ CS    ++  VV+ VL+       E   
Sbjct: 378 PQDLESFAPLQRGLLREALKAVRVGGVVGYATCSPHLAETRVVVEDVLKGRGGASAEAEW 437

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +++        A+   P+  I++ P +         G D  +   LRR  
Sbjct: 438 VDARPLLPGVPALGDGPD--IQLWPHL--------HGTDAMYLALLRRTA 477


>gi|304440678|ref|ZP_07400562.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304370865|gb|EFM24487.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 425

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 186/457 (40%), Gaps = 58/457 (12%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            M+ R  +  +L  V      L+  L+    ++           L+R I   +LR    +
Sbjct: 8   SMSVRREALQILKNV-SSGAFLSEELNKSRSEN---------IALLRNITTGSLRNKTYL 57

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D ++         +    ++ +L +S+ Q ++LD + DY +VD AV+  K+   ++    
Sbjct: 58  DYLIKKNSKIRFKKIHEDIRIILEMSLYQYIFLDGIPDYTIVDEAVKLTKKV-SHKGSVG 116

Query: 123 LVNSILRRVSREKIEL-----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            VN +LR   R K                 +PE + + LE  Y K+++  I     +   
Sbjct: 117 FVNGLLRNFMRTKDFEVDLKGKDYYLTRYSVPEKYFDYLEKNYSKDKLEEILKLNNTDDN 176

Query: 178 IDLTVKFD---IETWAHKLNAVMLPTGGI-----RLKELPESIVSLPGFAEGVWWVQDAS 229
             +   F     +     L         +      + E P+ I     F  G ++VQD+ 
Sbjct: 177 FTIRANFTKLTRDELIKSLGVKYNVRKDMLTKSGIIVEDPKDIFKTDEFKNGKFYVQDSG 236

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +  +L     +  VLD+CA PGGKT     ++    +V A D+      +      RL
Sbjct: 237 SILISELLNPKEDSLVLDMCANPGGKTTHLLEILNKTGRVVAWDIKDMVELRENAK--RL 294

Query: 287 HLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            L   +I   DA  Y  K    FD VL+DAPCS+ G IRRHP++ +     D+    C Q
Sbjct: 295 GLSNLEIETRDATIYDEKYNEKFDYVLLDAPCSAIGLIRRHPEIRY--KEVDLESITCVQ 352

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            KLL     ++KPGG++++S CS+ ++++E +V K L  +    ++       +K+    
Sbjct: 353 EKLLDNAGKYLKPGGLLMYSTCSVLEEENENIVDKFLEKNRDFEKIKTFGKDTFKTDATM 412

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            A                        DGF    LRR+
Sbjct: 413 EA------------------------DGFSISLLRRI 425


>gi|291458605|ref|ZP_06597995.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291419138|gb|EFE92857.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 427

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 181/453 (39%), Gaps = 69/453 (15%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  +L  +  K       L  E   S ++ + +RD+  +  +VN T+     +D  
Sbjct: 19  PRNTALSILFDIFEKGKHSHIALREEL--SKYKAMPERDRAFLTRLVNGTVERSVTLDYF 76

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           LD      + + +  L+ LLR+   QIL+ D V D A V+ +V+ + R +     +  VN
Sbjct: 77  LDRCSRLKVKKMRPLLRTLLRMGSFQILFSDRVPDSAAVNESVKLSHR-RGLSGLSSFVN 135

Query: 126 SILRRVSREKIEL--------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           ++LRR+S EK  +                 +PEW    L + YG+E    ++   +S   
Sbjct: 136 AVLRRISGEKESILRLLREEGEIPEYVRFSLPEWLYRFLLSEYGREETERMAAYFLS--- 192

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
                         + +   +     R  +   ++     F  G   +QD S+     L 
Sbjct: 193 --------------EEHGNYVRFRDGRCVKRSGNLSEEEAFRCGEMTIQDYSSQQVGLLA 238

Query: 238 GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  V+D+CA+PGGK   +        +V A D+++ ++  +  N++RLHL      
Sbjct: 239 SPAGGEFVVDVCASPGGKCCHVAELLRGSGRVDARDITEEKIRLIEENIERLHLKNIKAK 298

Query: 295 EMDAFDYCP-------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             DA    P       +   D +L D PCS  G + + PD+ ++   + I++    QR++
Sbjct: 299 LWDARKSDPSLTDSLGRGRADLLLCDLPCSGLGVLHKKPDIRFSAGLERILELQSLQREI 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    S+VKPGG +++S C+L + ++EE    +L      +                   
Sbjct: 359 LDCSQSYVKPGGRLIYSTCTLSRAENEENRDYILEHFSFTLLSE---------------- 402

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++ P             DGF+    RR
Sbjct: 403 -----RKVLPGQP---------SDGFYIAEFRR 421


>gi|182439855|ref|YP_001827574.1| putative RNA-binding Sun protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468371|dbj|BAG22891.1| putative RNA-binding Sun protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 477

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 101/467 (21%), Positives = 169/467 (36%), Gaps = 43/467 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R ++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 20  PVRFLAFEALRAVDERDAYANLVLPPLLKKARAKGDFDARDAALATELVYGTLRRQGTYD 79

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L + V Q+L   +  +A V  +VE A+        AK V
Sbjct: 80  AIVAACIDRPLREVDPPVLDVLNMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+V+   ++                 +A +   P W    L +  G  R     + 
Sbjct: 139 NAVLRKVTAHDLDGWVEKVAPPYDEDAEDHLAVVHSHPRWIVSALWDSLGGGRAGIEDLL 198

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
           +A      + L  +    T    + A+                        +L    EG 
Sbjct: 199 EADNERPEVTLAARPGRSTTGELVEALGEDNSLPGRWSPYAVRMAEGGEPGALAAVQEGR 258

Query: 223 WWVQDASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278
             VQD  + +                 LD CA PGGK A L    A   A  ++  +   
Sbjct: 259 AGVQDEGSQLVAAALAAAPVEGRDARWLDGCAGPGGKAALLAALAAGRGAALLAAEKQPH 318

Query: 279 LRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
               ++R          +I  D          FD +L+D PCS  G +RR P+  W R  
Sbjct: 319 RARLVERALAGNPGPYQVITADGTRPPWLPGSFDRILMDVPCSGLGALRRRPESRWRRRA 378

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL 393
           +D+   A  QR LL + +  V+ GG+V ++ CS    ++  VV+ VL+     PVE   +
Sbjct: 379 EDLEAFAPLQRGLLREALKAVRVGGVVGYATCSPHLAETRVVVEDVLKGRGGEPVEAEWI 438

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++        A+   P+  +++ P +         G D  +   LRR
Sbjct: 439 DARPLMPGVPALGDGPD--VQLWPHL--------HGTDAMYLALLRR 475


>gi|76797821|ref|ZP_00780086.1| sun protein [Streptococcus agalactiae 18RS21]
 gi|76586835|gb|EAO63328.1| sun protein [Streptococcus agalactiae 18RS21]
          Length = 426

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 121/444 (27%), Positives = 198/444 (44%), Gaps = 36/444 (8%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L  V  K       L+     S    LS +D+ LV  IV  T+     ++  L   +  
Sbjct: 2   TLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWYLSHFI-V 57

Query: 74  SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
              + +  +  LL +S+ Q+LYLD + D+A+V+ AV  AK     +   KL+N++LRRVS
Sbjct: 58  DRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVS 117

Query: 133 RE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--LYIDLTVK 183
            E            +R +    +P W  ++L + YG+ R LAI ++        + +T  
Sbjct: 118 SETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDL 177

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              +T    LN          L     +  S   F +G+  +QD S+ +         N 
Sbjct: 178 SQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPTLKVSGND 237

Query: 244 SVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298
            VLD C+APGGKT+ +   ++   VTALD+   +LE +  N  RL L       ++DA  
Sbjct: 238 QVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASK 297

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
             +Y  +  FD +LVDAPCS  G IRR PD+ + +   D       Q  +L      ++ 
Sbjct: 298 AHEYFLEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRK 357

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GGI+ +S C++ ++++ +V++K L + P        N    +       +   G I I+P
Sbjct: 358 GGIITYSTCTIFEEENFQVIEKFLENHP--------NFEQVELSHTQEDIVKRGCISISP 409

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
           +            DGFF   ++R+
Sbjct: 410 EQY--------HTDGFFIGQVKRI 425


>gi|320334556|ref|YP_004171267.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211]
 gi|319755845|gb|ADV67602.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211]
          Length = 420

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 112/438 (25%), Positives = 168/438 (38%), Gaps = 33/438 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  +L+ V+         LD     +    L  RD  L   IV   LR  P +  
Sbjct: 14  PARAVAVRVLARVL-GGAFAAPTLDEALAHAR---LPARDAGLATHIVYGALRHAPTLLP 69

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            LD +L  S P K    + LL     + L L  A +A V   V  A+          LVN
Sbjct: 70  ALDALLKGSTPIKA---RALLLAGAFEKLVLGTAPHAAVSEYVTLARDGF---ASPGLVN 123

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           ++LRRV           A    +P W ++     +G+    A+ D               
Sbjct: 124 AVLRRVDVAPD------ASPYALPSWLEQEFRTAFGEVAPDAMLDQLQPSPLWLYLDDAG 177

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +     + +AV    G +    L   +     +  G     + ++   V   G ++ L V
Sbjct: 178 VRALDEEGSAVEGGRGDVYRVALDRPLRETRAYRTGHAQPINPASHACVLALGDVDGLPV 237

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           LDL    G K A L   GA+VT++D    +    R NL RL + A+ +   D        
Sbjct: 238 LDLAGGAGVKAAMLARRGARVTSVDKIAGKHRAARENLARLGVQAQFV-TADLTRPLNAP 296

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
               VL+DAPC+ +GT+R HP++        + + A  QR LL +    V+PGG +V+S 
Sbjct: 297 PAPLVLLDAPCTGSGTLRAHPEIKLRLTEPAVGEMAALQRTLLTRAADLVQPGGTLVYSV 356

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CSL   +  +V    L   P   +   L   +   +           +R  P        
Sbjct: 357 CSLADAEGPQVAAAFLAEHP-DFQAEALPDLHVPVVQAGPG------VRTVP-------- 401

Query: 426 VSSGMDGFFAVALRRLIQ 443
              G+DGFF V L R  Q
Sbjct: 402 -VEGVDGFFIVRLHRRAQ 418


>gi|257464362|ref|ZP_05628739.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
 gi|317061867|ref|ZP_07926352.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
 gi|313687543|gb|EFS24378.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
          Length = 432

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 194/444 (43%), Gaps = 37/444 (8%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L   + +      +L+  +   +F+   + ++  +  +    +R    +D ++   +  
Sbjct: 9   ALLQEVEQGKYSNIVLNELFHKKSFQ---KGEKNFITEVFYGVIRNKIYLDHMISQKVK- 64

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
               KK  LQQL R+S  QI +++  D  V+   VE AK+       ++ VN++LR   R
Sbjct: 65  --EIKKDWLQQLFRLSFYQIRFMESDDKGVIWEGVELAKKKYG-ISVSRFVNAVLRNFQR 121

Query: 134 EKIELLQR------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----- 182
              E  ++         +   P+WF ++++     + +  I  +      + + V     
Sbjct: 122 SFSEEEEKLIKAEKEEILLSYPKWFFQQIKKENPTQYLE-ILKSLKRTPLLSVRVNLLKY 180

Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              + E +  +    ++            +I++   F EG   VQDA++ +  +  G   
Sbjct: 181 SCEEFEEYLAREEIDIVKKVETVYYLKAGNILASSEFQEGKMIVQDAASYLAAKNLGAKA 240

Query: 242 NLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              VLD C+APGGKT+   + + +  ++ +LD+   +++ ++ N  +L +     +++DA
Sbjct: 241 GEIVLDTCSAPGGKTSVLAEEMKNEGQILSLDIHTHKIKLIQENCKKLGITIVQAVKLDA 300

Query: 299 FDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K FD +LVDAPCS  G + + P+ L+T+  ++I +    QR++L      +K 
Sbjct: 301 RHLSLQGKKFDRILVDAPCSGYGVLAKKPEGLYTKKPENIGELVILQREILASAAEVLKV 360

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S C++  Q+++E     L + P        + A     ++A +    G   I  
Sbjct: 361 GGEMVYSTCTILPQENQENAAWFLETHPNF-----ESVALQIPENVAGSYDEWGGFSI-- 413

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                 D     +D F+ V  +RL
Sbjct: 414 ------DYQEKVLDSFYMVKWKRL 431


>gi|260578784|ref|ZP_05846691.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734]
 gi|258603082|gb|EEW16352.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734]
          Length = 513

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 102/470 (21%), Positives = 170/470 (36%), Gaps = 50/470 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           SG   R V   +L  V          L     +     +  RD      +   TLR    
Sbjct: 41  SGDKVRDVVFGVLRDVTVDGAFGNLALPKALRE---AGIKGRDAAFATELTYGTLRARGL 97

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +DA+++      + R        LR+   QIL   V ++A V+ +VE  K     +  + 
Sbjct: 98  LDAIIEDAAGRKIERIDSVALDALRLGAYQILRTRVENHAAVNTSVELVKAFGAGQ-ASG 156

Query: 123 LVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE--------R 164
            VN +LR ++R+K E               A  +  PEW  E      G +         
Sbjct: 157 FVNGVLRALTRKKPETWVERVAPGDSLADLALRNAHPEWIAEVFAEALGVDTATDAGRAE 216

Query: 165 VLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
           +     A  +   + L  +      E  A              +     +   +    EG
Sbjct: 217 LERALAADDARPIVHLAARPGQISGEELALITGGTEGKFSPYAVYLDEGAPGEIAPVREG 276

Query: 222 VWWVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRR 275
           +  VQD  + +       +          LDLCA PGGKTA +        A +D  +  
Sbjct: 277 MASVQDEGSQLIGLATTRIPVAADLPARWLDLCAGPGGKTAFIASVAMSEQASVDAIEIA 336

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFD-------YCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
             + +            +   D  +         P+  F  VL+DAPCS  G +RR P+ 
Sbjct: 337 EHRAKLIEQTTRDLPVRVHVGDGRNLEAIGSLEAPEGGFARVLIDAPCSGLGALRRRPEA 396

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            WT+D  D+      QR+LL+ G+    PGG+V++S CS   +++ EVV+ V   +    
Sbjct: 397 RWTKDPQDVAPLVTLQRELLISGLEATAPGGVVIYSTCSPHPKETSEVVRSVSARTG--A 454

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF-FAVA 437
           E++ +     +  +   A +   ++++ P +         G D   FA  
Sbjct: 455 EILDVTQFLPELAETNTAQTS-PFVQLWPHI--------HGTDAMSFAAL 495


>gi|328881116|emb|CCA54355.1| Ribosomal RNA small subunit methyltransferase B [Streptomyces
           venezuelae ATCC 10712]
          Length = 470

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/465 (20%), Positives = 163/465 (35%), Gaps = 42/465 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 20  PVRMLAFEALRAVDERDAYANLVLPPLLRKAREKGDFDGRDAALATELVYGTLRRQGTYD 79

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V  +VE A+    +   AK V
Sbjct: 80  AIISACVDRPLREVDPPVLDVLALGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 138

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR++S++ ++                 +A +   P W    L +  G  R     + 
Sbjct: 139 NAVLRKISQQDLDAWVAQVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEDLL 198

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWV 225
           +A      + L  +    T      A     G      L         ++    +G   V
Sbjct: 199 EADNERPEVTLVARPGRSTTDELAEATETLPGRWSPYALRMAEGGEPGAIEAVKDGRAGV 258

Query: 226 QDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLE 277
           QD  + +             +   LD CA PGGK A L       GA + A +    R  
Sbjct: 259 QDEGSQLVAIALANAPVEGSDARWLDGCAGPGGKAALLAALASERGAALLASEKQPHRAR 318

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            +   L       + I             FD VL+D PCS  G +RR P+  W R  +D+
Sbjct: 319 LVERALAGNPGPYQVIAADGTRPPWRPGSFDRVLMDVPCSGLGALRRRPEARWRRRPEDL 378

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
              A  QR LL + +S V+ GG+V ++ CS    ++  V    +       EL+      
Sbjct: 379 DGFAPLQRALLTEALSAVRVGGVVGYATCSPHLAETRVV-VDDVLKKVGGAELIDARPLL 437

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +         +++ P +         G D  +   LRR  
Sbjct: 438 PGVPALGDGPD----VQLWPHL--------HGTDAMYLALLRRTA 470


>gi|302541076|ref|ZP_07293418.1| sun protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302458694|gb|EFL21787.1| sun protein [Streptomyces himastatinicus ATCC 53653]
          Length = 482

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 159/466 (34%), Gaps = 40/466 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +        RD  L   +V  TLR     D
Sbjct: 24  PVRILAFEALRAVDERDAYANLVLPPLLRKAREDGGFDARDAALTTELVYGTLRLQGTYD 83

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V  +VE A+    +   AK V
Sbjct: 84  AIIAECVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 142

Query: 125 NSILRRV-------------SREKIELLQRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR++                  +    +  +   P W    L +  G  R     + 
Sbjct: 143 NAVLRKIAAADLDTWLERVAPPYDEDPEDHLGVVHAHPRWIVSALWDALGGGRAGIEDLL 202

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
           +A      + L  +         + AV   +                    +L    EG 
Sbjct: 203 EADNERPEVTLVARPGRAATDELVAAVGEESALPGRWSPYAVRLAEGGEPGALDAVREGR 262

Query: 223 WWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274
             VQD  + +             +   LD CA PGGK A L       GA + A +    
Sbjct: 263 AGVQDEGSQLVALALAAAPLDGPDRRWLDGCAGPGGKAALLGALAAERGAALLAAEKQPH 322

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           R   +   L       + I           + FD +LVD PC+  G +RR P+  W R  
Sbjct: 323 RARLVERALAGNPGPYQVIAAKGTRTKWRPESFDRMLVDVPCTGLGALRRRPEARWRRRP 382

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           +D+   A  QR LL + ++  + GG+V ++ CS    ++  VV  VL  +          
Sbjct: 383 EDLAGFAPLQRGLLREALAATRIGGVVGYATCSPHPAETRAVVDDVLGEARKDQGATAEW 442

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +    AL     +++ P +         G D  +   LRR
Sbjct: 443 IDARPLMPGVPALGEGPDVQLWPHL--------HGTDAMYLALLRR 480


>gi|146305094|ref|YP_001185559.1| sun protein [Pseudomonas mendocina ymp]
 gi|145573295|gb|ABP82827.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas mendocina ymp]
          Length = 437

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 115/445 (25%), Positives = 191/445 (42%), Gaps = 42/445 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  + SL   L           +   D+ L + +     R+ PR+  + D +L      
Sbjct: 14  VLSGKASLGSSLP-----PQLDKVEHHDRALAQDLAFGAARWQPRLQLLADKLLEKPFKA 68

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               ++ LL + + Q+L+  + ++A +   V  A   K+      L+N++LRR  RE   
Sbjct: 69  ADKDVEALLLIGLYQLLHSRIPEHAAIGETVGCAGALKKP-WAKGLLNAVLRRAQREHEA 127

Query: 138 LLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190
           L   +    +     P W +++L++F+  E   AI  A  +   + L V       + + 
Sbjct: 128 LFAELDRDPVLHTAHPRWLQKQLKSFWP-EYWQAICAANNAHPPLILRVNRRHGSRDAYL 186

Query: 191 HKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            +L                     P  + +LPGF EG   VQD +A +   L        
Sbjct: 187 EELRGAGFAAEPCTFSRDGVRLLQPCDVTALPGFREGRVSVQDEAAQLAADLLELAPGQR 246

Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299
           VLD CAAPGGKT  L+ +     +V A+D+ ++RL ++R NL RL L A           
Sbjct: 247 VLDACAAPGGKTCHLLEAEPALAEVIAVDLEEKRLTRVRENLQRLGLEARLIAADGRATK 306

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +     F  +L+DAPCS+TG IRRHPD+  TR ++DI   A  Q +LL      + PGG
Sbjct: 307 VWWDGTPFQRILLDAPCSATGVIRRHPDIKLTRKSEDIPALAQLQGELLDALWPTLAPGG 366

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           I++++ CS+   ++ + +   L  +P   E+         +I     L      ++ P +
Sbjct: 367 ILLYATCSVLPTENSDTIAAFLARTPDAQEV---------AIGGDFGLQAAHGRQLLPQL 417

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQP 444
                    G DGF+   L +   P
Sbjct: 418 --------DGHDGFYYAKLIKSAVP 434


>gi|326780519|ref|ZP_08239784.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326660852|gb|EGE45698.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 477

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/467 (21%), Positives = 169/467 (36%), Gaps = 43/467 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R ++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 20  PVRFLAFEALRAVDERDAYANLVLPPLLKKARAKGDFDARDAALATELVYGTLRRQGTYD 79

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L + V Q+L   +  +A V  +VE A+        AK V
Sbjct: 80  AIVAACIDRPLREVDPPVLDVLNMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+V+   ++                 +A +   P W    L +  G  R     + 
Sbjct: 139 NAVLRKVTAHDLDGWVEKVAPPYDEDAEDHLAVVHSHPRWIVSALWDSLGGGRAGIEDLL 198

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
           +A      + L  +    T    + A+                        +L    EG 
Sbjct: 199 EADNERPEVTLAARPGRSTTDELVEALGEDNSLPGRWSPYAVRMAEGGEPGALAAVQEGR 258

Query: 223 WWVQDASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278
             VQD  + +                 LD CA PGGK A L    A   A  ++  +   
Sbjct: 259 AGVQDEGSQLVAAALAAAPVEGRDARWLDGCAGPGGKAALLAALAAGRGAALLAAEKQPH 318

Query: 279 LRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
               ++R          +I  D          FD +L+D PCS  G +RR P+  W R  
Sbjct: 319 RARLVERALAGNPGPYQVITADGTRPPWLPGSFDRILMDVPCSGLGALRRRPESRWRRRA 378

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL 393
           +D+   A  QR LL + +  V+ GG+V ++ CS    ++  VV+ VL+     PVE   +
Sbjct: 379 EDLEAFAPLQRGLLREALKAVRVGGVVGYATCSPHLAETRVVVEDVLKGRGGEPVEAEWI 438

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++        A+   P+  +++ P +         G D  +   LRR
Sbjct: 439 DARPLMPGVPALGDGPD--VQLWPHL--------HGTDAMYLALLRR 475


>gi|239917585|ref|YP_002957143.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
           luteus NCTC 2665]
 gi|239838792|gb|ACS30589.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
           luteus NCTC 2665]
          Length = 543

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 107/488 (21%), Positives = 170/488 (34%), Gaps = 66/488 (13%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  ++  V  +      +L      +    L +RD      +   TLR L   DA
Sbjct: 64  PARRVAFGVVRSVHAEDAYANLVLPARIRQAR---LDRRDAGFATELAYGTLRGLGLYDA 120

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L   +   L +    +   LR+   Q+L + V  +A +D  V   + +      +  VN
Sbjct: 121 ILTRCVDRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEVG-AGASGFVN 179

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLEN-----------FYGKE 163
           ++LRR++   +E                A  +  P W    L                  
Sbjct: 180 AVLRRIAERPLEEWLADVAPADGGDAALAVRTSHPVWIVRALRQALAAHRGTRHIADRDA 239

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGF 218
            + A+ +A  +P  ++L              A+        L              LPG 
Sbjct: 240 ELAALLEANNAPPVVNLVALPVAGGAEALAAALDDGAEPGPLAPDSALHSGGDAGRLPGV 299

Query: 219 AEGVWWVQDASASIPVQLFGTLNNL-------SVLDLCAAPGGKTAQLIV----SGAKVT 267
            EGV  VQDA + +  +    +            LDLCA PGGK A L       GA + 
Sbjct: 300 REGVLRVQDAGSQLTARALAHVPVPAAEGRAERWLDLCAGPGGKAALLAALAAERGATLV 359

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIR 323
           A +V+  R + +R  L  +   A  +   D             FD VLVDAPC+  G +R
Sbjct: 360 ANEVAPHRADLVRQALAAVPAGAWTVRAGDGRTIADAPEAAPAFDRVLVDAPCTGLGALR 419

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R P+  W R   D+ +    Q +LL   ++ + PGG++ +  CS    ++   VQ ++R 
Sbjct: 420 RRPESRWRRTPADLAELTGLQAELLDAAVAVLAPGGVLAYVTCSPHVAETVVQVQDLVRR 479

Query: 384 SP-----------IPVELVPLNSAYWKSIDMAMALS-PEGWIRITPDMLEKIDGVSSGMD 431
            P             V L  L     +               ++ P           G D
Sbjct: 480 HPELELLDARTALDAVALDDLRLDEAEPAGAPEPADVVARTAQLWPH--------RHGTD 531

Query: 432 GFFAVALR 439
             F   LR
Sbjct: 532 AMFLALLR 539


>gi|225024416|ref|ZP_03713608.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
           23834]
 gi|224942797|gb|EEG24006.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
           23834]
          Length = 419

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 193/450 (42%), Gaps = 48/450 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N + +++H ++ V     +L+ +L   + D     LS +++  ++ I     RF   + A
Sbjct: 5   NVQTLAAHSVAAVEA-GCNLSDVLAEIWRDHPQ--LSAQERGALQDIAYGCQRFSGSLRA 61

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV- 124
           +LD +L   LPR    ++ L+  ++ Q+ Y   A +AVV+ AV  A +  + ++ A    
Sbjct: 62  LLDLMLNKPLPRAD--IRSLILAALYQLAYSRNAAHAVVNEAVRAAGKIGKGQYKALTNA 119

Query: 125 --NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
                LR       +  Q   G   +P W+ ERL+  Y  E  L I++A  S   + L +
Sbjct: 120 LLRRFLRERDSLMQQAQQSPEGRYNLPNWWLERLQRDYP-EHWLQITEAFNSHPPMTLRI 178

Query: 183 ---KFDIETWAHKLNAVMLPTG----GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                D E +   L+   +          +   P  + +LP FAEGV  VQD  A     
Sbjct: 179 NRRHTDAEGYLKILDEHGMQAEILGSHAVMLATPVPVSALPLFAEGVVSVQDWGAQQAAA 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--D 292
                N   VLD CAAPGGK+  L   +   +TA+D+   RL+++R NL RL+L AE   
Sbjct: 239 WLNVQNGERVLDACAAPGGKSGHLLEWADCTLTAIDIDPTRLQQVRDNLSRLNLSAELHA 298

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                        LF+AVL D PC+++G   RHPD+ W R   D   +A  Q  LL    
Sbjct: 299 ADARQWASCYDGLLFNAVLADVPCTASGVACRHPDIKWLRRPQDAKNTAAQQTDLLDALW 358

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +KPGG ++ S CSL  +++   +Q  L+  P                           
Sbjct: 359 RTLKPGGRMLLSTCSLFTEENGSQLQAFLQRHPDAACTRSET------------------ 400

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             + P+  +         DGF+   + +  
Sbjct: 401 --LLPNPHQ---------DGFYYALIHKTA 419


>gi|237740345|ref|ZP_04570826.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229422362|gb|EEO37409.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 434

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/454 (23%), Positives = 199/454 (43%), Gaps = 42/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+ + V+  L+S V  K      +L+  + +     L+ +++  +  I    LR    +D
Sbjct: 1   MSVKYVAMKLISFVD-KGSYSNIVLNDAFKE---FYLTAKEKAFITEIFYGVLRNKNFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ Q+ ++      VV  A E AK+       +K +
Sbjct: 57  YMIEKNTKV---IKKEWIRNLLRISIYQLTFMSSDAKGVVWEATEIAKKH--GIAISKFI 111

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K          +    +  IP++F + LE  YG E +     +     Y+
Sbjct: 112 NGTLRNYLRNKDLEIKKLHDEKNYEILYSIPQYFCDILEKQYGSENLNQAIISLKKIPYL 171

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV--------SLPGFAEGVWWVQDASA 230
            + V  +   ++ +     L    I++ +  +S+         +   F EG    QDAS+
Sbjct: 172 SVRV--NKLKYSEEEFEEFLKEKDIQIIKKVDSVYYVNSGLIINSKEFKEGKIIAQDASS 229

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  +  G   N  VLD+CAAPGGKTA   + + +  ++ A+D+ + + + +  N+ +L 
Sbjct: 230 YLAAKNLGVKPNDLVLDICAAPGGKTAVLAEEMKNKGEIIAIDIHQHKKKLIEENMKKLG 289

Query: 288 LYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +       +D        + FD +LVD PCS  G IR+ P++L+T++ ++I + A  Q +
Sbjct: 290 IDIVKATVLDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYTKNRENIEELASLQLE 349

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      +K GG +++S C++  Q++ E V+K L              A     +++  
Sbjct: 350 ILNSAADILKDGGELIYSTCTIISQENTENVEKFLNERKEFKV-----KALNIPENVSGE 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               G   I        +     MD F+ + L +
Sbjct: 405 YDKLGGFSI--------NYKEEIMDNFYIIKLVK 430


>gi|296285189|ref|ZP_06863187.1| tRNA and rRNA cytosine-C5-methylase [Citromicrobium bathyomarinum
           JL354]
          Length = 418

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 140/440 (31%), Positives = 198/440 (45%), Gaps = 35/440 (7%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
            G+ AR  +  LL  V+R+  +L          +A R L   D  L RAI   TLR+L  
Sbjct: 9   PGLPARRAALRLLDGVLRRGETLEQ-----NETAALRGLPASDAGLARAIAAETLRWLVD 63

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
            DA++D      LP      + +LR+ +AQ L LD   +AVV  A+            + 
Sbjct: 64  FDALIDSATREVLPE-DAKPRTVLRLMLAQWLRLDTPPHAVVATALPL---------LSG 113

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
               +   V     +    +     +PE   ER          +A   A   PL + L  
Sbjct: 114 GPKRLAHGVFGALTKRGVELPAAPTLPEAVAERWGER---AEAIAAGLAEPPPLDLTLRD 170

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
                 W  KL A  L  G +RL    +++  L GF +G WWVQD +AS+P +L G    
Sbjct: 171 PAQTAEWTVKLGADSLMPGHLRLSRG-QAVHGLEGFEDGAWWVQDLAASLPARLLGDGQG 229

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
              LDLCAAPGGKT QL   G +VTALD+S +RL+ L  NL+R  L AE I         
Sbjct: 230 RRALDLCAAPGGKTLQLAAQGWQVTALDISAKRLKLLEENLERTGLEAEVIAADAFKWEP 289

Query: 303 P---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
           P      FDA+L+DAPC++TGT RRHPDVL       I + A  Q +L+ +   ++ PGG
Sbjct: 290 PAENGAKFDAILIDAPCTATGTARRHPDVLHRIGPRQIEQMAEVQARLIERASGWLTPGG 349

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V++ CSL+ +                   +P      + +   ++ +  G +R  P M
Sbjct: 350 ALVYAVCSLESE---------EGEEQAEKVWLPREPVSAEELPAGLSPTAHGTLRTDPGM 400

Query: 420 LEKIDGVSSGMDGFFAVALR 439
           L        G+DGFF    R
Sbjct: 401 L----PEHGGLDGFFIARWR 416


>gi|330937254|gb|EGH41269.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 390

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/399 (26%), Positives = 175/399 (43%), Gaps = 30/399 (7%)

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           PR+ A+   +L          ++ LL V + Q+ Y  +  +A +   V  A + K+    
Sbjct: 1   PRLSALAAKLLQKPFKAADDDVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WA 59

Query: 121 AKLVNSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISP 175
             L+N++LR   R+   LL  +    +     P W ++ L+  +  +   +  ++    P
Sbjct: 60  KGLLNAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPP 119

Query: 176 LYIDLTVKFDI-ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDA 228
           + + +  + +  + +   LN   L        +       P  + SLPGFAEG   VQD 
Sbjct: 120 MILRVNRRHNRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDE 179

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDR 285
           +A +   L        VLD C APGGKT  L+    +   V A+D+  +RL ++R NLDR
Sbjct: 180 AAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDR 239

Query: 286 LHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           L L A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  DDI   A  
Sbjct: 240 LGLDAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALATL 299

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +LL      ++ GG++V++ CS    ++ +V++  L  +    EL     A      +
Sbjct: 300 QGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGI 359

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             A               ++     G DGF+   L ++ 
Sbjct: 360 KQA------------HGRQLLAQQGGHDGFYYAKLIKIA 386


>gi|239904671|ref|YP_002951409.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239794534|dbj|BAH73523.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 477

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 161/427 (37%), Gaps = 35/427 (8%)

Query: 6   NARLVSSHLLSCVMRK----RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            AR ++  +L  V+         +   LD+   DS    L  RD+ L   +V   LR   
Sbjct: 44  PARRIALTVLGRVLPSPKSPGQDVQAALDVALADS---TLDPRDRGLATELVYGYLRLCG 100

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           R+D +L   L +       +++++L ++  +IL+   V  YA VD AV   ++    +  
Sbjct: 101 RLDYILAQFLKNP-TAVPLAVRRILGLAAYEILHCAKVPAYASVDWAVSAVRK-AGGKGL 158

Query: 121 AKLVNSILRR-------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
           + + N++LRR               R++      ++     PEW         G +    
Sbjct: 159 SGMANAVLRRVAADPGAFEEPGFYRRDRPSEAVYLSRAFSCPEWIVSLWLGACGPDETRQ 218

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI----------VSLPG 217
              A   P  + L V           NA+    G +       ++          ++LP 
Sbjct: 219 HLAAQAEPAPLGLRVNGARPEAQALFNALAALPGALYAVFPTIAVPTGTDFAAAGLNLPE 278

Query: 218 FAEGVWWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR 275
                   + ++A+     +L        + D CA  GGKT  +  +G +V A D+   R
Sbjct: 279 LLASGALSRQSAAAQDVLYRLDLPEWPEPIFDACAGRGGKTLLIAEAGKRVFAADMHAAR 338

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           L  L     RL L         A           +L+DAPCS  G + R PD  W R  +
Sbjct: 339 LAGLPREAARLGLPPIPAFRASATRMALGAPVGTILLDAPCSGLGVLSRRPDAKWRRQPE 398

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           D+      Q  +L    + + PGG +V+  C+++  ++E+ + ++       +  V  ++
Sbjct: 399 DLAGLTRLQGAMLEAAYANLAPGGRLVYITCTVNPAENEKAIDRLGSRRHDLILDVEASA 458

Query: 396 AYWKSID 402
                + 
Sbjct: 459 VPDPVLG 465


>gi|91774564|ref|YP_544320.1| Fmu (Sun) [Methylobacillus flagellatus KT]
 gi|91708551|gb|ABE48479.1| Fmu (Sun) [Methylobacillus flagellatus KT]
          Length = 416

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 171/447 (38%), Gaps = 56/447 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++  L+ V+         L   + +     L  +++  V   V   LR    +  +  
Sbjct: 7   RLAAIALADVLGNPGPADAKLGKFFREHR--ELGNKERAWVAEAVYGVLRRRSFLVYLAG 64

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                             R+ VA ++ +       +D  + Q +++  +   AK    + 
Sbjct: 65  NEDPR-------------RLLVAWLVRVQGNSLRELDELLNQQQKEWAHEIKAKSTEGLS 111

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185
                         A  + +PEW  +RLE+ YG E  L I+ +   P  +DL V     +
Sbjct: 112 -------------PAIQADLPEWLWQRLESQYGAEEALVIARSMHKPASLDLRVNLVKSN 158

Query: 186 IETWA-----HKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            E         K  A   P     ++     SI   P F EG   VQD  + +   L   
Sbjct: 159 REEVLARFASEKAGAEATPYSPTGIRLPQRMSINRHPFFTEGKIEVQDEGSQLLAMLVAP 218

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA----ED 292
                + D CA  GGK      L+ +  ++ A DVS+RRL  L   L R  L        
Sbjct: 219 RRGEMIADFCAGAGGKSLALGALMRNTGRLYAFDVSERRLHNLGQRLKRSGLSNLHSQVI 278

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             E D         F+ VLVDAPCS  GT+RR+PD+ W +  +DI +    Q  +L +  
Sbjct: 279 SSESDPKLKRLNGKFNRVLVDAPCSGLGTLRRNPDLKWKQTPEDIAELVAKQTAILQRAA 338

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             VK GG +V++ CSL  +++E+V +  L + P    +        + +++        +
Sbjct: 339 KLVKAGGRLVYATCSLLAEENEQVAEAFLSAHPQFTLINATEILAQQQVELDTGT----Y 394

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++ P             DGFFA    
Sbjct: 395 LKLLPH--------QHETDGFFAAVFE 413


>gi|256832544|ref|YP_003161271.1| Fmu (Sun) domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256686075|gb|ACV08968.1| Fmu (Sun) domain protein [Jonesia denitrificans DSM 20603]
          Length = 517

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 169/466 (36%), Gaps = 42/466 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +L  V         +L      +    L  RD      +   TLR     DA+
Sbjct: 62  ARQVAFEVLRQVADSDAYANLVLPPALRRAR---LEGRDAGFATELAYGTLRMRGLYDAI 118

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--------- 117
           +       L     ++   LR+ V QI+ + V  +A V   V  A+ +            
Sbjct: 119 IAAHTTRPLEDIDSAVLDCLRLGVHQIVSMRVPAHAAVSETVGVARDNIGAGPAQFINAV 178

Query: 118 -RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISDA 171
            R  ++  +  +   + E ++    +A     P W    L +        +  ++A+ DA
Sbjct: 179 LRSISETDSDEIMAKAVEGLDETHTLAVRHSHPAWVVRALRDALGAQGRDRSEIVALLDA 238

Query: 172 CISPLYIDLTVKFDIETWAHKL----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
             +   + L  +  +      +    ++V        +        S+     G   VQD
Sbjct: 239 DNAAPAVTLVARPGLSDADELVGLIEDSVPGQWAPTAVIMPGTDPASVDDVRTGRAGVQD 298

Query: 228 ASASIPVQLFGTLN----NLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRR---L 276
             + +             +   LD+CA PGGK     A   +  A++ A +V   R   +
Sbjct: 299 EGSQLVTLALVDAPLEGRDERWLDMCAGPGGKAALLGAFADLRQARLVANEVQPHRAELV 358

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           EK    L +  +    + +           +D +LVDAPC+  G +RR P+  W R   D
Sbjct: 359 EKSLRALPQDAIERIQVWDGREIGVLEPGAYDRILVDAPCTGLGALRRRPESRWRRQARD 418

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-PIPVELVPLNS 395
           + + +  Q  LL+  +  V+ GG+V +  CS    ++   V + ++   P  VE +   S
Sbjct: 419 VGELSQIQEDLLVSALQAVRVGGVVAYVTCSPHIGETRVAVDQGIKKFGPDNVERLDTPS 478

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +    ++ +     +++ P +           D  +   LRR+
Sbjct: 479 VVRQIAGDSIDVGDSTDVQLWPHV--------HQTDAMYLALLRRI 516


>gi|187735067|ref|YP_001877179.1| sun protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425119|gb|ACD04398.1| sun protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 412

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 101/394 (25%), Positives = 163/394 (41%), Gaps = 15/394 (3%)

Query: 1   MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+   + R  + + L      R     L+D E   +A   L   D+ LV+A+V   LR 
Sbjct: 1   MKNNPPSPRQTALNCLRSWHAGRSFAETLVDRECSRTA---LPSADRHLVQALVFSVLRN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              +D V+  +      R     + +L++ ++Q+  L +AD+A V   V  A        
Sbjct: 58  QTWLDHVIGTLRKG---RLDVEARLILQLGLSQLFLLGMADHAAVYETVNLASVRLRGLV 114

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A L N++ R  +  +      ++     P W   R     G +    +     +     
Sbjct: 115 NAILRNALRREKTILEEREKLPLSIHYSTPAWLVRRWTEQMGPQMARDLLRWNNTTP--R 172

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           L V+ +       + A + P          E ++ L     G  +V D S    + L   
Sbjct: 173 LYVRANPLMPMKNIPASLAPLDRAPGWFSVEGLLPLEEIKTGSLYVADPSTRYSIDLLAP 232

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                +LD CAAPGGK           A +TA D+ + RL  L+ NLDR         + 
Sbjct: 233 QPGEEILDACAAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLDRQGSSFVRTAQA 292

Query: 297 DA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           D         K  FDAVL+D PCS+TG I+R  DV W    ++I +    Q+ +L     
Sbjct: 293 DWSLPCRTEWKGRFDAVLLDVPCSNTGVIQRRVDVRWRLTPEEIRRLTALQKTILENASR 352

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            VKPGG +V+S CS+D ++   +++  L++ P  
Sbjct: 353 AVKPGGRLVYSTCSIDAEEDGLLIRDFLQNHPEW 386


>gi|184200812|ref|YP_001855019.1| putative rRNA (cytosine-C(5)-)-methyltransferase [Kocuria
           rhizophila DC2201]
 gi|183581042|dbj|BAG29513.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 553

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 115/475 (24%), Positives = 189/475 (39%), Gaps = 50/475 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARL +   L  V  +      +L     +     L +RD      +    +RF    DA
Sbjct: 91  PARLAAFRALRAVTSEDAYGNLVLPGLVRELR---LDRRDAAFATELGYGAMRFSGTWDA 147

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL   +   L +   ++   LR+   Q+L + V D+A +D  V   + +   +  A LVN
Sbjct: 148 VLAECVDRPLEQLDPAVLDALRLGTHQLLAMRVPDHAALDATVGLVRGEIG-QGPAGLVN 206

Query: 126 SILRRVSRE------------KIELLQRIAGISIIPEWFKERLENF-----YGKERVLAI 168
           ++LR+V+R             + +  +R+      P W    L           E + A+
Sbjct: 207 AVLRKVARRSQEEWFEALEAEQPDRWRRMGIRHAHPVWEIRALRRALRANGRDPEEITAL 266

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226
            +A      + L     + +    L A   P              +  +PG  EGV  VQ
Sbjct: 267 LEADNEAPRVHLVALPGLGSLEGALEAGAEPGDLVPGSAVSGGGDVHRVPGTREGVVRVQ 326

Query: 227 DASASIPVQLFGTLNNL----SVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEK 278
           DA + +  ++    +         DLCA PGGK     A     GA + A +VS+ R E 
Sbjct: 327 DAGSQLVARVLAAADVTEDSGRWADLCAGPGGKAALLAALAHERGAHLLANEVSEHRGEL 386

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +R +L  +   A ++   DA +        FD VLVD PC+  G +RR P+  W R   D
Sbjct: 387 VRQSLQPVPRDAWEVRTGDAREVPGWHPGGFDRVLVDVPCTGLGALRRRPEARWRRTPSD 446

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           +   A  QR+LL   +   +PGG+V+++ CS    ++ +V+  +L        L   + A
Sbjct: 447 VADLATVQRELLRAAVDATRPGGVVLYATCSPHTAETHDVLHDLLDERTDVTVLDTAHLA 506

Query: 397 YWKSIDMAMALS-------PEGW--IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              ++  A+          P G   +++ P +         G D  + VALRR  
Sbjct: 507 ARAALPGALDGDRAVRHEVPGGGSSVQLWPHV--------HGTDAMYMVALRRTA 553


>gi|240116730|ref|ZP_04730792.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|240118952|ref|ZP_04733014.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
          Length = 417

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 4   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 61  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 118 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 177 NRRHGNAESYLEKLVAEGITAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 356

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 357 WQVLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416


>gi|260439509|ref|ZP_05793325.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268602401|ref|ZP_06136568.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268604663|ref|ZP_06138830.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|291042746|ref|ZP_06568487.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268586532|gb|EEZ51208.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268588794|gb|EEZ53470.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|291013180|gb|EFE05146.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 419

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGITAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQVLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|291613407|ref|YP_003523564.1| Fmu (Sun) domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583519|gb|ADE11177.1| Fmu (Sun) domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 423

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 93/447 (20%), Positives = 163/447 (36%), Gaps = 52/447 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +    L   ++       +L   +       +   ++ LV   +   LR    +D     
Sbjct: 10  LVIQALRAALKMEHPSDAVLRHFFQAER---IGSNERSLVAETLFGVLRHRLFLDHACTL 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                   ++ +L   +R     +  L+          + + K    N            
Sbjct: 67  DDKGQATARRMALAYWVRFGGYNLRELEPLLKPKEAEWLGKVKSIDANA----------- 115

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
                       ++  + +PEW  E+L   +  + +LA+  +      +DL V       
Sbjct: 116 ----------LPLSIQAELPEWIVEKLRPQHSDDEILALGRSMQQSAPLDLRVNTLLAGR 165

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240
                 L A  +         +   +   P       F  G + VQD  + +   L    
Sbjct: 166 NEVLQSLQAEGMDAQATPYSPIGIRLKYKPALNKHALFLTGKFEVQDEGSQLLGILLAPK 225

Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
            N  V+D CA  GGKT     ++ S  ++ A DVS++RL  L+  L R  L         
Sbjct: 226 RNDMVVDFCAGAGGKTLMLGAMMNSQGRLYAWDVSEKRLTNLKPRLKRSGLSNVQPQLIA 285

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ + +    + +    Q  +L     
Sbjct: 286 HENDNKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKFRQSAQSVAELNEKQAAILASAAR 345

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K GG +V++ CSL  ++++ +VQ  L + P    +   +    + ID+AM      ++
Sbjct: 346 LLKQGGRLVYATCSLLHEENQAIVQAFLAAHPDFTLVPASDVLRQQHIDLAMGD----YL 401

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++TP             DGFFA  + R
Sbjct: 402 QLTPQY--------HNTDGFFAAVMER 420


>gi|320093626|ref|ZP_08025510.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979414|gb|EFW10892.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 514

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 162/480 (33%), Gaps = 50/480 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGD-SAFRLLSQRDQILVRAIVNVTLRFLPRID 64
             R V+  +LS V         +L               RD      +V+ TLR   R+D
Sbjct: 41  APRRVAFEVLSEVTSSGAFANIVLPKALRRIRREEPFDDRDAAFTSELVHGTLRARGRLD 100

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN------- 117
             L   +   L      +  LLR+   Q+L + V D+A V   V+ A+    +       
Sbjct: 101 WALARHVDRPLGDLDPRVLDLLRMGAHQLLDMRVPDHAAVSATVDVAREHLTDGPVRMVN 160

Query: 118 ---RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAIS 169
              R  A+     +        +   R+A     PEW    L        Y +  +    
Sbjct: 161 AVLRALAREEVGRIDEEIARIEDGDARLAVAHSHPEWMVRALRAALAAHGYDEAELEDAL 220

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLP---------TGGIRLKELPESIVSLPGFAE 220
            A      + L  +  +                           +         LP   +
Sbjct: 221 AADNEAPIVSLAARPGLIGVEELCEEAEDVLSARVATGLVSKCAVLLASGDPARLPSIRQ 280

Query: 221 GVWWVQDASASIPVQLF-----GTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTALDV 271
           G+  VQD  + +  Q+          + S LDLCA P        A     GA V A ++
Sbjct: 281 GLAGVQDEGSQLAAQICAGAPLVGQGDSSWLDLCAGPGGKAALLGALAAGRGAHVVANEI 340

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMD------AFDYCPKKLFDAVLVDAPCSSTGTIRRH 325
              R   +      L     +++  D           P   FD VLVDAPC+  G++RR 
Sbjct: 341 HPHRARLVERTTRALGT--VEVVSGDGRTFGGQGTQWPLGSFDRVLVDAPCTGMGSMRRR 398

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           P+  W R   D+      Q +LL +  +  +PGG++ +  CS  ++++ + V+++L +  
Sbjct: 399 PESRWRRAPGDVDGLVELQERLLDRAGALTRPGGVMTYVTCSPHRRETRDQVERLLGAGG 458

Query: 386 ----IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 V L    +    ++         G          ++ G   G D  F  ALRRL
Sbjct: 459 WELLDAVALADSVAVEPLAVPDRAGRVDGGGA----GRTLQLWGHRHGTDSMFVAALRRL 514


>gi|284032217|ref|YP_003382148.1| Fmu (Sun) domain-containing protein [Kribbella flavida DSM 17836]
 gi|283811510|gb|ADB33349.1| Fmu (Sun) domain protein [Kribbella flavida DSM 17836]
          Length = 459

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 170/460 (36%), Gaps = 43/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R V+  ++  V  +       L+    D   + LS RD      +V+ TLR+    DA
Sbjct: 17  KVRQVAYRVIRQVNGEDGYANLALNKALRD---QRLSGRDAAFCTELVHGTLRWQGAYDA 73

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            L   +   L      L  LLR+   Q+L + V  YA V+  V   + +   +  + LVN
Sbjct: 74  FLARSVSRPLADLDPELLDLLRLGAHQLLRMRVDSYAAVNEMVTLTRAEVG-QSRSGLVN 132

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           ++LR++S+  ++                 +A     P W  E        E V  + DA 
Sbjct: 133 AVLRKISQRTLDQWIATVAPKPDEDPGGYLAIAKAHPRWVVEAFAEVLDAESVEDLLDAD 192

Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             P  + L  +    D++            +    + +       +   A G   VQD  
Sbjct: 193 NEPPKVTLVARPGLSDLDELVEAGATRARWSPYAAILQGGGDPGRIQAVATGRAGVQDEG 252

Query: 230 AS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           +              ++   LDLCA PGGK+A L     +  A+ ++    +K R  L R
Sbjct: 253 SQLVAAALASAPLDGSDAKWLDLCAGPGGKSALLAALANQREAV-LTAVEPQKHRAELVR 311

Query: 286 LHLYAEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            +L A                 P   +D VL D PCS  G +RR P+  W R  +D+   
Sbjct: 312 SNLRAIPGDHQVLIGDGTKPTWPSGWYDRVLADVPCSGLGALRRRPEARWRRTPEDVEGL 371

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  LL   I+ V+PGG+V +  CS    ++  VV  VL   P  V L    +     
Sbjct: 372 RPLQEALLASAITSVRPGGVVAYVTCSPHPGETRAVVDAVLARRPDAV-LEDARALLPGV 430

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +         +++ P +         G D  +   +RR
Sbjct: 431 PSLGDGPD----VQLWPHV--------HGTDAMYLALIRR 458


>gi|325135221|gb|EGC57846.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M13399]
          Length = 419

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHI--RAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL        
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDAVL D PC+++G  RR+PDV W R   D  K+A  Q  LL   
Sbjct: 299 CADAQDLPAWYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L       EL+                    
Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|293398234|ref|ZP_06642439.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           gonorrhoeae F62]
 gi|291611497|gb|EFF40567.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           gonorrhoeae F62]
          Length = 419

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|312195556|ref|YP_004015617.1| Fmu (Sun) domain protein [Frankia sp. EuI1c]
 gi|311226892|gb|ADP79747.1| Fmu (Sun) domain protein [Frankia sp. EuI1c]
          Length = 486

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 152/477 (31%), Gaps = 59/477 (12%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR+++  +L  V  +      LL       A R L+ RD+     +    LR    +D +
Sbjct: 24  ARMLAWEVLRAVDERGAYANLLLPSLL---AQRRLTGRDRGFATELTYGALRAQGLLDGL 80

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF------ 120
           LD V    +      L+  LR+   Q+L   V   A V   V+  +     R        
Sbjct: 81  LDTVTSRPVATVDPGLRDALRLGTYQLLRTRVPARAAVGTTVDLVRATAGERPVRFANAV 140

Query: 121 ----------AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAI 168
                          + +        +    +A ++  P W  E   +      +   A 
Sbjct: 141 LRRVADRVAETGGDIATMLSAPAFDRDPFGHLAVVTAHPRWIVEVFADALDGDLDETRAA 200

Query: 169 SDACISPLYIDLTVKFD---IETWAHK-----LNAVMLPTGGIRLKELPESIVSLPGFAE 220
             A  +   + L    D    +    +     L           +        +LP  A 
Sbjct: 201 LQADDTRPAVHLVAPPDQLSRDELLAEVHEAGLAGEPGRYSPFAVVLAGGDPGALPAVAA 260

Query: 221 GVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR 275
               VQD  + +          +       +DLCA PGGK A L          +     
Sbjct: 261 HRAAVQDEGSQLVALALARTPTVGPDSGVTVDLCAGPGGKAALLAALLTSGQVGETLGLP 320

Query: 276 LEKLRCNLDR------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
              L     R                A  +     +   P    D VLVDAPC+  G +R
Sbjct: 321 EPALLAFEPRASRAGLVAAALAGRPGAFAVRADGRYPPLPAGRVDRVLVDAPCTGLGALR 380

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R P+  W +   D    A  QR+LL+  +  V+PGG+V +  CS    +S EVV  V+  
Sbjct: 381 RRPEARWRKLASDATALARLQRQLLVSALDLVRPGGVVAYVTCSPHPAESVEVVASVVEQ 440

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               V L+    +      +        ++++ P           G D  F   LRR
Sbjct: 441 R-DAVTLLDARQSLPGVPALGEGP----FVQLWPH--------RHGTDAMFLALLRR 484


>gi|261378986|ref|ZP_05983559.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
           ATCC 14685]
 gi|269144601|gb|EEZ71019.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
           ATCC 14685]
          Length = 419

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPNLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNATHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L++ Y K     I+ A  S   + L V
Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKSHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKDLDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL        
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDAVL D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADAQDLPAWYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDGMKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L       EL+                    
Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|296315160|ref|ZP_06865101.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           polysaccharea ATCC 43768]
 gi|296837969|gb|EFH21907.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           polysaccharea ATCC 43768]
          Length = 419

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  +  V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIEAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D  K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLSRHNDA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|150021390|ref|YP_001306744.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429]
 gi|149793911|gb|ABR31359.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429]
          Length = 416

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 97/446 (21%), Positives = 182/446 (40%), Gaps = 37/446 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS +   +++  LL    R  I  T                  ++   + ++   LR  
Sbjct: 1   MKSDL---IIAYRLLRKKFRSGIFSTEFYQAFSY--------VEEKAFFKNLIFGVLRKQ 49

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D V++ +L         S++ +LR+   Q+L+ +   Y++V+  VE  ++    + F
Sbjct: 50  EYLDWVINSLLKK--KDIPPSIRTILRIGTYQLLFTNKPSYSIVNETVELVEK----KSF 103

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN+ILR++S+      + +      P+W  E  + F   + +  I +    PL    
Sbjct: 104 KGLVNAILRKISKIGYTEPKELYLKYSHPKWLIEYWKKFLPLDYIYKILEYNQYPLKTTA 163

Query: 181 TVK---FDIETWA-HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            V     D +      +        GI  +++ E+   L  +  G    Q  S+ I   L
Sbjct: 164 RVNKRKIDRDKLKIENIFPTPHSPVGIYFEKIEENPWKLDKYINGYITYQSESSQIIPLL 223

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                +  V D CAAPGGK   ++      +   DV K++++ L     RL+L  + I+ 
Sbjct: 224 VDFEKDELVFDACAAPGGKATHILELCDVNLVINDVEKQKIKILENQFKRLNLRPKKILN 283

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            DA     K  FD + +DAPCSS G  RR+P+VL  +  ++  K +  Q  ++     ++
Sbjct: 284 FDAQKITLKDKFDKIFIDAPCSSLGIARRNPEVLRRQKKENFKKLSEIQINIISNLWKYL 343

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K  GI+++S C++  +++   V+K                 + + +D+   L   G   +
Sbjct: 344 KKHGIMIYSTCTVTIEENTNTVKK--------------WKPFAEFVDIRERLEKFGIKYV 389

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                            F+   LR++
Sbjct: 390 WDGYGTLFYPDEILTP-FYVSILRKI 414


>gi|297588339|ref|ZP_06946982.1| probable rRNA methylase [Finegoldia magna ATCC 53516]
 gi|297573712|gb|EFH92433.1| probable rRNA methylase [Finegoldia magna ATCC 53516]
          Length = 423

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 175/424 (41%), Gaps = 36/424 (8%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89
                   +  L +RD   ++  V   +     ID V+       L +    + ++LR++
Sbjct: 22  SELLKTYDYGDLDKRDIAYIKRCVFTEIENRFFIDYVISKCSDLELNKLDKIVLEILRMA 81

Query: 90  VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK-IELLQRIAGISII 148
             +IL++  ADYAVVD AVE A       H+   VN++LR V R    E          I
Sbjct: 82  TTEILFMKTADYAVVDEAVELANNL---THYKDYVNAVLREVCRINLDEEDLGDEIKFSI 138

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK-------LNAVMLPTG 201
            +   + L   Y K+ V  +  +        +      E            +        
Sbjct: 139 NKELLKMLNKSYSKKTVKKLLKSFFYKSDFVIKQNKLKENNLKTNLENQGFVLEEHPFLK 198

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI- 260
              +   PESI+    F EG + +QD S S+  ++   + N  VLD+CAAPG K+  +  
Sbjct: 199 DSFIVRNPESIIDTNEFKEGKFIIQDGSCSLCAEVLEPMENSVVLDICAAPGSKSCNIQE 258

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPC 316
              + + +   D++  ++++++ N+ +  +     +  DA          FD +LVDAPC
Sbjct: 259 LTNNQSIIYCNDINNNKIDRIKENVYKCGVENVQYLNFDANILQEGLINKFDRILVDAPC 318

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S+TG I ++P++   R   D+      QR++L     ++K GG++V+S CSL K+++EE 
Sbjct: 319 SATGVINKNPEIKLFRTKKDVENLVETQRRILENCEKYLKKGGVLVYSTCSLLKEENEEN 378

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           V  +             +    K  D+        +I++ P           G  GFF  
Sbjct: 379 VDYI------------EDKLNLKREDIDFYGDKNEFIKLMP--------FQKGTQGFFIS 418

Query: 437 ALRR 440
              +
Sbjct: 419 KFVK 422


>gi|261400037|ref|ZP_05986162.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           lactamica ATCC 23970]
 gi|269210259|gb|EEZ76714.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           lactamica ATCC 23970]
          Length = 419

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHI 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL        
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLSRHNDA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|313200002|ref|YP_004038660.1| fmu (sun) domain-containing protein [Methylovorus sp. MP688]
 gi|312439318|gb|ADQ83424.1| Fmu (Sun) domain protein [Methylovorus sp. MP688]
          Length = 432

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 171/455 (37%), Gaps = 61/455 (13%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L+ ++        +L   + ++    L  +++  V   V   LR    +  + D
Sbjct: 10  RFAGTALADILAGTGPADAVLGSFFRNNR--ELGTKERAFVAESVYGVLRRKRLLSYLAD 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L      +  L+RV   Q + L   +  +     E A+  K             
Sbjct: 68  GDDPRKL-----LVAWLVRV---QGMSLRDLEDTLNTQQKEWAQEIK------------- 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
                 K      +A  + +P+W  E+L   YG E+ L I+ +      +DL V      
Sbjct: 107 -----AKNTDNLSLAIQADMPDWLWEKLSAQYGDEQALTIARSMQQQAMMDLRVNTIKAT 161

Query: 186 IETWAHKLNAVMLPTGGIRLKELP-----------ESIVSLPGFAEGVWWVQDASASIPV 234
            E    K  +         +   P            +I     F EG   VQD  + +  
Sbjct: 162 REDVLAKFISENTQLNQDTILPTPLSPTGIRLPQRLNISRHILFTEGKVEVQDEGSQLLA 221

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
            L        + DLCA  GGKT  +   + +  ++ A D+S++RL  L   L R  L   
Sbjct: 222 HLVAPRRGEMIADLCAGAGGKTLAMGALMRNTGRLYAFDISEKRLTNLGQRLKRSGLSNL 281

Query: 292 DII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                  E DA        F+ VLVDAPCS  GT+RR+PD+ W +   D+++    Q  +
Sbjct: 282 HSQLISSEQDAKLKRLNGKFNRVLVDAPCSGLGTLRRNPDLKWRQTPQDVLELTGKQTSI 341

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L +    VK GG ++++ CSL   ++E +    L + P   +L+P N    +     + +
Sbjct: 342 LARAAKLVKAGGRLIYATCSLLSDENEAIADAFLAAHP-DFKLIPANEVLAQ---QQIPV 397

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               ++++ P +           DGFFA    +  
Sbjct: 398 DTGEYLKLLPHL--------HQTDGFFAAVFEKAA 424


>gi|294782560|ref|ZP_06747886.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           1_1_41FAA]
 gi|294481201|gb|EFG28976.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           1_1_41FAA]
          Length = 434

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 104/454 (22%), Positives = 198/454 (43%), Gaps = 42/454 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M+ + V+  L+S V  K      +L+  + +     L+ +++  +  I    LR    +D
Sbjct: 1   MSVKYVAMKLISFVD-KGSYSNIVLNDAFKE---FYLTAKEKAFITEIFYGVLRNKNFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ Q+ ++      VV  A E AK+       +K +
Sbjct: 57  YMIEKNTKV---IKKEWIRNLLRISIYQLTFMSSDAKGVVWEATEIAKKH--GIAISKFI 111

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K          +    +  IP++F + LE  YG E +     +     Y+
Sbjct: 112 NGTLRNYLRNKDLEIKKLHDEKNYEILYSIPQYFCDILEKQYGSENLNQAIISLKKIPYL 171

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV--------SLPGFAEGVWWVQDASA 230
            + V  +   ++ +     L    I++ +  +S+         +   F  G    QDAS+
Sbjct: 172 SVRV--NKLKYSEEEFEEFLKEKDIQIIKKVDSVYYINSGLIINSKEFKVGKIIAQDASS 229

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +  +  G   N  VLD+CAAPGGKTA   + + +  ++ A+D+ + + + +  N+ +L 
Sbjct: 230 YLAAKNLGVKPNELVLDICAAPGGKTAVLAEEMENKGEIIAIDIHQHKKKLIEENMKKLG 289

Query: 288 LYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +       +D        + FD +LVD PCS  G IR+ P++L+T++ ++I + A  Q +
Sbjct: 290 IDIVKATVLDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYTKNRENIEELASLQLE 349

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      +K GG +++S C++  Q++ E V+K L              A     +++  
Sbjct: 350 ILNSAADILKDGGELIYSTCTIIFQENTENVEKFLNERKEFKV-----KALNIPENVSGE 404

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               G   I        +     MD F+ + L +
Sbjct: 405 YDKLGGFSI--------NYKEEIMDNFYIIKLVK 430


>gi|254494751|ref|ZP_05107922.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|226513791|gb|EEH63136.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
          Length = 419

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 194/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLREREKLAASCKKDDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL    +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D  K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARRQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQVLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|300705521|ref|YP_003747124.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum CFBP2957]
 gi|299073185|emb|CBJ44543.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Ralstonia
           solanacearum CFBP2957]
          Length = 443

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 168/438 (38%), Gaps = 34/438 (7%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           +R+  +L   +D               +  V+ +   T R+L   D ++  ++       
Sbjct: 22  LRQGTALPQAIDAACAGQPGPT-----RGAVQDLAYRTTRWLGSADWLIRTLIPRPPAED 76

Query: 79  KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                 LLRV++AQ+L   +    + VVD AV  A  D +  H   +VN +LRR  RE+ 
Sbjct: 77  TA---NLLRVALAQLLDTPLPYAPFTVVDQAVRAASADPKLAHAKGMVNGVLRRFLREQG 133

Query: 137 ELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186
           +L+  +          P W+   +   Y +     ++     P  +       + V   +
Sbjct: 134 DLVAAMQADPVAATNYPAWWISAVREAYPEAWQAILAAGNRRPPMVLRVNPRRVPVDAYL 193

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
              A                     +  LPGFAEG   VQDA A +   L        VL
Sbjct: 194 ARLAEAGIEAERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAGAQLAAALLDVAPGQRVL 253

Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302
           D CAAPGGKT     +  G  V AL+    R E++  NL RL   A            + 
Sbjct: 254 DACAAPGGKTGHLLELADGLDVVALESDGARAERIGENLARLGQTATVCVGDAAKPDAWW 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +LVD PCS+ G +RRHPD+ W R   D+   A  QR ++    + +KPGG +V
Sbjct: 314 DGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPSDLPALAALQRDIVSALWACLKPGGKLV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CS+   + E  V+         + L         + + A        +   P     
Sbjct: 374 YVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPATPEAAPVGGFVPGVSSLP----- 428

Query: 423 IDGVSSGMDGFFAVALRR 440
                   DGF+    ++
Sbjct: 429 -----LDHDGFYYAVFQK 441


>gi|240017576|ref|ZP_04724116.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA6140]
 gi|240113994|ref|ZP_04728484.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240122197|ref|ZP_04735159.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
          Length = 417

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 4   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 61  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 118 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL    +            E    +  LPGFAEG+  VQD  A     
Sbjct: 177 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 356

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 357 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416


>gi|239997893|ref|ZP_04717817.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268593745|ref|ZP_06127912.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268683215|ref|ZP_06150077.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268547134|gb|EEZ42552.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268623499|gb|EEZ55899.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
          Length = 419

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLREREKLAASCKKDDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL    +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|194099888|ref|YP_002003025.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240124641|ref|ZP_04737527.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|193935178|gb|ACF31002.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
          Length = 417

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 4   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 61  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 118 VLRRFLREREKLAASCKKDDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL    +            E    +  LPGFAEG+  VQD  A     
Sbjct: 177 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 356

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 357 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416


>gi|240015126|ref|ZP_04722039.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|268600059|ref|ZP_06134226.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268584190|gb|EEZ48866.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
          Length = 419

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL    +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|217970240|ref|YP_002355474.1| Fmu (Sun) domain protein [Thauera sp. MZ1T]
 gi|217507567|gb|ACK54578.1| Fmu (Sun) domain protein [Thauera sp. MZ1T]
          Length = 447

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/446 (21%), Positives = 165/446 (36%), Gaps = 55/446 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  L  V+        +L   + D+    L  RD+  +   V            +    
Sbjct: 37  ATQALGAVLAFDYPADAVLSRHFRDNR--ELGHRDRGFIAEAVYGV---------LRRLR 85

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
            +  +   + + + LL        +     +             +     A         
Sbjct: 86  WLRRIAGAEATPRMLLLA-----WFARGEGWP-----------MRNFEGLASATERDWIT 129

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIE 187
             +        +A  + +P+W  ERL      + +LA++     P  +DL V     D +
Sbjct: 130 SIKAAEAGEPSLAERADLPDWLAERLLAQMDGDELLALAHGLNRPAPLDLRVNLIKSDRD 189

Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
               +L A  +     RL           ++   P F +G + VQD  + +   L     
Sbjct: 190 ALLERLQADGVRAEPGRLSPQAIRLAGKPALQKHPLFLDGSFEVQDEGSQLLGLLVQPRR 249

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294
              V+D CA  GGKT Q   ++ S  ++ A DVS++RL KL+  + R  L          
Sbjct: 250 GELVVDFCAGAGGKTLQLGAMMRSTGRLYAFDVSEKRLAKLKPRMARAGLSNVHPVLIAH 309

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E DA         D VLVDAPC+  GT+RR+PD+ W +    + +    Q  +L      
Sbjct: 310 EADAKVKRLAGKADRVLVDAPCTGLGTLRRNPDLKWRQSPAAVEEMVAKQGAILAAAARV 369

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V+PGG +V++ CSL  ++++ +V   L + P    L        + + +         +R
Sbjct: 370 VRPGGRLVYATCSLLAEENDGIVDAFLAAHPEFRALSAQEVLAAQGVALETGER----LR 425

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + P +           DGFFA  + R
Sbjct: 426 LLPHV--------HDTDGFFAAVMER 443


>gi|253997937|ref|YP_003050000.1| Fmu (Sun) domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253984616|gb|ACT49473.1| Fmu (Sun) domain protein [Methylovorus sp. SIP3-4]
          Length = 432

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 100/453 (22%), Positives = 171/453 (37%), Gaps = 61/453 (13%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L+ ++        +L   + ++    L  +++  V   V   LR    +  + D
Sbjct: 10  RFAGTALADILAGTGPADAVLGSFFRNNR--ELGTKERAFVAESVYGVLRRKRLLSYLAD 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L      +  L+RV   Q + L   +  +     E A+  K             
Sbjct: 68  GDDPRKL-----LVAWLVRV---QGMSLRDLEDTLNTQQKEWAQEIK------------- 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
                 K      +A  + +P+W  E+L   YG E+ L I+ +      +DL V      
Sbjct: 107 -----AKNTDNLSLAIQADMPDWLWEKLSAQYGDEQALTIARSMQQQAMMDLRVNTIKAT 161

Query: 186 IETWAHKLNAVMLPTGGIRLKELP-----------ESIVSLPGFAEGVWWVQDASASIPV 234
            E    K  +         +   P            +I     F EG   VQD  + +  
Sbjct: 162 REDVLAKFISENTQLNQDTIVPTPLSPTGIRLPQRLNISRHILFTEGKVEVQDEGSQLLA 221

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
            L        + DLCA  GGKT  +   + +  ++ A D+S++RL  L   L R  L   
Sbjct: 222 HLVAPRRGEMIADLCAGAGGKTLAMGALMRNTGRLYAFDISEKRLTNLGQRLKRSGLSNL 281

Query: 292 DII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                  E DA        F+ VLVDAPCS  GT+RR+PD+ W +   D+++    Q  +
Sbjct: 282 HSQLISSEQDAKLKRLNGKFNRVLVDAPCSGLGTLRRNPDLKWRQTPQDVLELKGKQTSI 341

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L +    VK GG ++++ CSL   ++E +    L + P   +L+P N    +     + +
Sbjct: 342 LARAAKLVKAGGRLIYATCSLLSDENEAIADAFLAAHP-DFKLIPANEVLAQ---QQIPV 397

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               ++++ P +           DGFFA    +
Sbjct: 398 DTGEYLKLLPHL--------HQTDGFFAAVFEK 422


>gi|149928076|ref|ZP_01916323.1| NOL1/NOP2/sun family protein [Limnobacter sp. MED105]
 gi|149823162|gb|EDM82399.1| NOL1/NOP2/sun family protein [Limnobacter sp. MED105]
          Length = 448

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/446 (21%), Positives = 165/446 (36%), Gaps = 52/446 (11%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
            + L+  + +        +   + D     L  RD+ +V   V   LR+  RI+ +    
Sbjct: 36  VAQLIDLLAQFEGPADAAISRFFKDHP--ELGGRDRPMVAEAVYCWLRYRYRINHLAQ-- 91

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                   + +   LL                     +  A +  +N   ++++N     
Sbjct: 92  SGEGPSVVRQAKLALLWSGA--------------PEQIWSAGKQADNEWLSRVINISADD 137

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
           +              + +PEWF  +L   +G+ER  + S A +S   +DL V     +  
Sbjct: 138 LGV---------EARTCLPEWFYTKLAEQFGQERAESFSQAVLSAAPLDLRVNTVKASTT 188

Query: 191 HKLNAVMLPTGGIRLKELPES---------IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
             L A+      +   E             +     F EG + VQDA +    +L     
Sbjct: 189 DLLAALTNMGIQVNPIEGLPEGLRAVGKPIVGKTEVFQEGYFEVQDAGSQWVSRLVAPRR 248

Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294
              V+D CA  GGK       + +  ++ ALD S++RL K +    R  L     +    
Sbjct: 249 GDLVIDFCAGAGGKTLAIGAQMKNTGRIVALDTSEKRLVKFKPRAARSGLSNFYTMVIND 308

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D          D V+ D PCS  GT+RR+PD+ + ++   + +    Q+ ++      
Sbjct: 309 EADPRLNKYFGKADRVVTDVPCSGMGTLRRNPDLKFRQNLQSLSELTAKQKSIIEHAAKL 368

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VKP G +V+  CS+ + ++E++V   L S P    L               A + +  +R
Sbjct: 369 VKPDGRLVYITCSVLRDENEDIVNAFLESHP-EFRLRRWTEVLNPGERPVKANTTDDMLR 427

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + P             DGFFA  L+R
Sbjct: 428 LWP--------EDGESDGFFAAVLQR 445


>gi|240124490|ref|ZP_04737446.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
          Length = 417

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 4   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 61  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 118 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 177 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 356

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 357 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416


>gi|240081718|ref|ZP_04726261.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268597816|ref|ZP_06131983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268683121|ref|ZP_06149983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268551604|gb|EEZ46623.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268623405|gb|EEZ55805.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|317165348|gb|ADV08889.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 419

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella
           denitrificans ATCC 33394]
 gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella
           denitrificans ATCC 33394]
          Length = 421

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/445 (24%), Positives = 186/445 (41%), Gaps = 50/445 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++ + + V     +L+  L           LS +D+ +++ +     RF   +  +L+ 
Sbjct: 9   LAAQIFTAV-HGGQNLSDELGRVLAGEP--ALSAQDKGMLQDLAYGCQRFYGSLHFMLNR 65

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +L   +      L   L V++ Q+ +   A YAVV+  V    +    ++ +   N+ILR
Sbjct: 66  LLNKPVD--NPLLYAHLLVALYQLNHTRNAPYAVVNETVRHIGKIGRGQYRS-FANAILR 122

Query: 130 RVSRE----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV--- 182
           R  RE                 +P W K  L+  Y K     I+ A      + L V   
Sbjct: 123 RFLREREGLNKAARFDDTAKYNLPAWLKSSLQQQYPKHW-HNIAAAFQMHPPLTLRVNRR 181

Query: 183 KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             + E +A  L    +                 +  LP FAEG   VQD  A     L  
Sbjct: 182 YGNAERYAALLQQAGIEAKILDDYAVRLNEAVPVQQLPQFAEGHVSVQDWGAQQAAYLLQ 241

Query: 239 TLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295
             NN  +LD CAAPGGKT  +  ++   +TALD+   RL++++ NL RL L+A       
Sbjct: 242 PQNNERILDACAAPGGKTGHILEMADCALTALDIDPVRLQRVQDNLTRLGLHAQLHCAAA 301

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            +  D+   + FDA+L D PC+++GTI+R+PD+ W R  +D  K+A  Q  LL +    +
Sbjct: 302 QNLDDWWDGQPFDAILADVPCTASGTIKRNPDIKWLRRPNDAAKTARQQEILLDRLWQTL 361

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KPGG ++ + CSL  +++    Q  L+  P                        +    +
Sbjct: 362 KPGGRMLLATCSLFHEENGRQCQNFLQRHPDAQL--------------------QQEQTL 401

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P+  +         DGF+   + +
Sbjct: 402 LPNDKQ---------DGFYYALISK 417


>gi|83945242|ref|ZP_00957591.1| sun family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851412|gb|EAP89268.1| sun family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 438

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 99/458 (21%), Positives = 160/458 (34%), Gaps = 59/458 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L  VM +   +   L        F      D+  +  +V   LR    +  V+   
Sbjct: 10  AIEVLDAVMNRHQPVKDALRDWGKAHRFAG--SGDRAWMSGLVLDALRRRGFLRHVMGED 67

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                       + L+  +++    +D    +      E A         A L N     
Sbjct: 68  TP----------RALVLGALSYAWGMDATAISATFEGDEHAPDPLTEAEIAGLSNGAPED 117

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
                         ++ +PEW     E  YG +       A      +DL V        
Sbjct: 118 TPLHI---------LADVPEWLGPSFERAYGADAAA-EGQAMAGRAPVDLRVNRLKAEPD 167

Query: 191 HKLNAVMLPTGGIRLKELPES---------------IVSLPGFAEGVWWVQDASASIPVQ 235
               AV      I + +L                    S+P F +G   VQD  + +   
Sbjct: 168 KAFGAVSSKIKTIEVSDLTLDGLRIPETDPRAKAPGAESIPAFGKGWVEVQDIGSQLAAL 227

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G +    VLD CA  GGKT   + L+ +  ++ A D   RRL  +   L R       
Sbjct: 228 AAGDIKGAQVLDYCAGAGGKTLALSALMENTGQLYAWDYDGRRLRAIWPRLQRSGARNVQ 287

Query: 293 IIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           + +    +     +   D V +DAPCS +GT RR PD  W    +   +    Q ++L +
Sbjct: 288 VRDGKEAETLGDLEGKLDCVFMDAPCSGSGTWRRRPDSKWRLKEEAFKRRQSEQDEVLSK 347

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
              FVKPGG +V+  CS+  +++E+ V   L + P     VP + A  +S  +A      
Sbjct: 348 AWRFVKPGGRLVYVTCSVLPEENEDRVAAFLEAHP-KFTPVPASDAIAQSGRLAEGAQER 406

Query: 411 --------GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   G I++TP          +G DGF+   + R
Sbjct: 407 LKVLEGRFGAIQLTPH--------RTGTDGFYVCVMER 436


>gi|313837734|gb|EFS75448.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL037PA2]
 gi|314927384|gb|EFS91215.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL044PA1]
 gi|314972672|gb|EFT16769.1| putative ribosomal RNA small subunit methyltransferase B
           [Propionibacterium acnes HL037PA3]
 gi|328907468|gb|EGG27234.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium sp. P08]
          Length = 458

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 100/464 (21%), Positives = 177/464 (38%), Gaps = 37/464 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    AR ++   L  V          L  +   +    ++ RD   V  +V+ T R   
Sbjct: 10  RKADPARRLAYTALLAVETHGAYANLALADQLRAAK---MTGRDAAFVTELVDGTSRGTG 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             D +++     +  + +  ++ +LR++  QIL + V   A V  +V+ A +    R   
Sbjct: 67  TWDRIIEVASRRNPTKLQPGVRVMLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125

Query: 122 KLVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDA 171
            LVN++ RR+S   ++               A  ++ P W  E  ++  G   V     A
Sbjct: 126 GLVNAVSRRISTHSLDEWATEIGGRNAVDVLALRTLHPTWIVEAFQDRLGPNEVEDALLA 185

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L V+  +   A   +          +   P +   +    EG   VQD  + 
Sbjct: 186 DNEPPVPTLVVRPGLAERAEIASGTPTRYSPWGVAR-PGNPSEVAAVREGRAGVQDEGSQ 244

Query: 232 IPVQLFGTL-----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLRCN 282
           + V                LDLCA PGGK            + +TA+++ + R + +   
Sbjct: 245 LVVLALLRAAEASGCLGPWLDLCAGPGGKSALLAGLANQRDSSLTAVELHEHRADLVAKA 304

Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L +       ++  D      P + F AVL D PCS  G++RR P+  W R   D+ +  
Sbjct: 305 L-KPIPGNHRVMTADGTRPPLPAQSFAAVLADVPCSGLGSLRRRPEARWRRTLTDVKELT 363

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+LL   ++  +PGG+V +  CS  + ++ +++     + P+ V   P   A    I
Sbjct: 364 QLQRRLLTSAVNLTRPGGVVGYVTCSPHRAETIDIINFARATLPVDVLNAP---AMLPDI 420

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
               A      I++ P           G D  F   LR+  + +
Sbjct: 421 PNIAASGNSNTIQLWPH--------RHGTDAMFCALLRKRNESE 456


>gi|59802189|ref|YP_208901.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|59719084|gb|AAW90489.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
          Length = 419

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|254805842|ref|YP_003084063.1| Sun protein [Neisseria meningitidis alpha14]
 gi|254669384|emb|CBA08529.1| Sun protein [Neisseria meningitidis alpha14]
 gi|325205205|gb|ADZ00658.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M04-240196]
          Length = 419

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLREREKLASSCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|121633990|ref|YP_974235.1| SUN-family protein [Neisseria meningitidis FAM18]
 gi|120865696|emb|CAM09423.1| SUN-family protein [Neisseria meningitidis FAM18]
 gi|254671147|emb|CBA08200.1| Sun protein [Neisseria meningitidis alpha153]
 gi|325133179|gb|EGC55850.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M6190]
 gi|325138791|gb|EGC61343.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis ES14902]
 gi|325143273|gb|EGC65611.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis 961-5945]
 gi|325197401|gb|ADY92857.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis G2136]
          Length = 419

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +P           E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|161870942|ref|YP_001600122.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
 gi|161596495|gb|ABX74155.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
          Length = 419

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/449 (24%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSVAAV-AEGRNLQDVLAEIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|304388913|ref|ZP_07370960.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis ATCC 13091]
 gi|304337047|gb|EFM03234.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis ATCC 13091]
 gi|325203231|gb|ADY98684.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240355]
          Length = 419

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|309780267|ref|ZP_07675018.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
           5_7_47FAA]
 gi|308920970|gb|EFP66616.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
           5_7_47FAA]
          Length = 443

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 105/447 (23%), Positives = 170/447 (38%), Gaps = 35/447 (7%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++  L   +R+  +L   +D         +     +  V+ +     R+L   D ++  
Sbjct: 14  LAAVALGK-LRQGTALPQAIDAVCQGQPAPV-----RGAVQDLAYRATRWLGSTDWLIRT 67

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           ++             LLRV++AQ+L        + VVD  V  A  D +  H   +VN +
Sbjct: 68  LIPRPPAEGAA---NLLRVALAQLLDDPQPYAPFTVVDQTVTAASADPKLSHGKGMVNGV 124

Query: 128 LRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI----- 178
           LRR  RE+     ++    +  +  P W+ + + + Y       ++     P  +     
Sbjct: 125 LRRFLREQHALVADMQADPSAATNYPMWWIDAVRSAYPDAWQTILAAGNRRPPMVLRVNP 184

Query: 179 -DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
             + V   +   A                     +  LPGFA+G   VQDA A +     
Sbjct: 185 RRIAVSAYLARLAEAGIDAERIGEQAVRLARAVPVSELPGFADGAVSVQDAGAQLAATFL 244

Query: 238 GTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
                  VLD CAAPGGKT     +  G  VTAL+    R  ++  NL RL+  A     
Sbjct: 245 DVAPGQRVLDACAAPGGKTGHLLELADGLDVTALESDAARAVRIHENLARLNQSATICVG 304

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                  +   + FD +L D PCS+ G +RRHPD+ W R   D+   A  QR ++    +
Sbjct: 305 DAAKPDTWWDGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALAGLQRDIVRALWA 364

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +KPGG +V+  CS+   + E+  Q   R     + L         S D A         
Sbjct: 365 CLKPGGKLVYVTCSIFPTEGEDQAQWFERHLEDAIRLHAPGQLLPVSPDAAQTS------ 418

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +    DGFF    ++
Sbjct: 419 ----GFAAGASPLPLDHDGFFYAVFQK 441


>gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
 gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
          Length = 450

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 177/454 (38%), Gaps = 37/454 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            + +  L  V  K +S    L+  +     R      + +  A V    ++  +ID +++
Sbjct: 11  EIVADALMLVEEKELSSKHALERIFRKVEGRDRETA-RGIAHAYVFEIEKWRAKIDFIIN 69

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120
            VL  S +      L  LLR+ V ++ +  V           VV    +  +    N   
Sbjct: 70  SVLKGSRVEDLDPYLANLLRIGVFEMKFKGVNPAIATDSIVRVVKEKFDLTRAKFANAIL 129

Query: 121 AK--LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +    N        ++ + +  ++     P W+ E + N  G +  + +  + + P   
Sbjct: 130 REVEKFNVEKALRKLKEKDRIVWLSIRFSHPRWYVEYVVNLLGYDEAVRLLLSNMRPQRY 189

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D++     L    +      + +        + +  L  + +G + +QD +
Sbjct: 190 YVRVNTLKADVDKVRKYLEDNGVKVSLTPVDDVLKVLDYEKPVTKLEWYKKGYFVIQDLA 249

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++    +        VLDL AAPG KT      + +  ++ A+D S  RL K++  +  L
Sbjct: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKIL 309

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +    ++  D   +  K  FD V++DAPCSS+GT R+ P+V W  D + I +    QR 
Sbjct: 310 GVKNVKLVHADGQSFLDKDKFDKVILDAPCSSSGTYRQFPEVKWRFDEEKIKRIINVQRN 369

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +LL     +K GG + +S CS+   ++EE V   L       ELV  N ++    D    
Sbjct: 370 MLLNAYRNLKEGGEMTYSTCSIRIDENEENVIFALEK---GFELVDYNFSWG---DRGFL 423

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              E   R      +           FF   LR+
Sbjct: 424 EIGEKVFRTWTHKHDCNS--------FFIAKLRK 449


>gi|292493781|ref|YP_003529220.1| sun protein [Nitrosococcus halophilus Nc4]
 gi|291582376|gb|ADE16833.1| sun protein [Nitrosococcus halophilus Nc4]
          Length = 440

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 196/454 (43%), Gaps = 44/454 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R++++ +L+ V+ +  SLT  L           L  RDQ   + +    LR+LPR++ +
Sbjct: 10  TRVIAATVLAQVLGQGRSLTAALPPAVAH-----LPDRDQAFTQTLCYGVLRWLPRLEYL 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +L   L  +   L  LL + + Q+  L +  +A +   V  A+         KL+N+
Sbjct: 65  AQKLLRKPLRARDVDLYSLLLLGLYQLTELGIPSHAALSETVAAAES-LGKPWAKKLINA 123

Query: 127 ILRRVSREKIELLQRIAGI----SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILR   R ++ L  ++A      S  P W  E +   +  +    I  A      + L V
Sbjct: 124 ILRAYLRNQVALQAQVATHEVAHSAHPRWLLEAIRRSWPDDW-SQIIAANNCHPPLSLRV 182

Query: 183 ---KFDIETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
              +    ++  +L         +  T    + + P  + +LPGF EG   VQD +    
Sbjct: 183 NRLQGSRASYLQELERNGIEARAIPHTEWGVVLDQPRPVTTLPGFLEGRVSVQDGAGQRV 242

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYA 290
             L        VLD CAAPGGKT  ++    ++    ALD+   RLE+L  NL RL L A
Sbjct: 243 APLLALAPGQRVLDACAAPGGKTCHILELEPQLETLIALDLEAVRLERLDSNLKRLQLKA 302

Query: 291 ----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                         +     FD +L+DAPCS +G IRRHPD+   R   DI      Q++
Sbjct: 303 KAQVVQGDAAQPQTWWDGIPFDRILLDAPCSGSGVIRRHPDIKVLRRERDIPPLVVLQKR 362

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL      + PGG++++  CS+  Q++E+ +++ L + P   E         + +++   
Sbjct: 363 LLSALWPLLAPGGLLLYCTCSILPQENEQQIREFLLAHPEGKE---------RPLEVPWG 413

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L      ++           + G+DGF+   L +
Sbjct: 414 LPQIPGRQLL--------TGAEGLDGFYYACLEK 439


>gi|82703733|ref|YP_413299.1| Fmu (Sun) NOL1/Nop2p [Nitrosospira multiformis ATCC 25196]
 gi|82411798|gb|ABB75907.1| Fmu (Sun) NOL1/Nop2p [Nitrosospira multiformis ATCC 25196]
          Length = 423

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 100/445 (22%), Positives = 164/445 (36%), Gaps = 56/445 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  L  V+  +     LL   + D+    L   D+  +  IV   LR    ++ V++  
Sbjct: 13  ATAALRTVLPLQRPADSLLRHFFQDNR--KLGVHDRAFIAEIVFGILRHRFFLERVVEIA 70

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              S           L ++     YL       +          +  R       S+  +
Sbjct: 71  TPRS-----------LLLA-----YLAKFSGMNLRELTPLVSETEAKRLAEMKAVSLESQ 114

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
                          +  PEW  E+L  F     +L +  +  +P  +DL V       E
Sbjct: 115 PLGV----------QAEFPEWLLEKLREFMDDGAILDLGRSLQAPAPLDLRVNTQLATRE 164

Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                L    +                  +I     F  G   VQD S+ +   L     
Sbjct: 165 EVIELLRKDGIEGMPTPYSPLGIRLTGKPAINRHEAFMSGKIEVQDESSQLLGYLLAPRR 224

Query: 242 NLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294
              V+D CA  GGK+  L   + S  ++ A D S++RL  L+  L R  L          
Sbjct: 225 RDMVVDFCAGAGGKSLMLGALMCSQGRIYAFDNSEKRLNNLKPRLKRSGLSNLHPQLIAN 284

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D          D VLVDAPCS  GT+RR+PD+ W +    I +  C Q  +L    + 
Sbjct: 285 ENDIKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQSIEELKCKQTAILSSAANL 344

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +KPGG +V++ CS   ++++E+V+  + ++P    L        + I +   +    +++
Sbjct: 345 LKPGGRLVYATCSFLPEENQEIVENFIANNPRFTLLNCAELLRQQKIPLDTGV----FMQ 400

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALR 439
           + P           G DGFFA AL 
Sbjct: 401 LLP--------RLHGTDGFFAAALE 417


>gi|296129702|ref|YP_003636952.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109]
 gi|296021517|gb|ADG74753.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109]
          Length = 509

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/477 (22%), Positives = 172/477 (36%), Gaps = 50/477 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR  +   L  V         +L     +   R L+ RD      +   TLR   
Sbjct: 44  RTSDPARAAAYDTLRAVAESEAYANLVLPPLLRE---RGLAGRDAAFATELAYGTLRLRG 100

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R DAVL       L      +  +LR+   Q+L + V  +A V   V  A+        A
Sbjct: 101 RYDAVLAQASSRPLDEVDPPVLDVLRLGAHQLLGMRVPAHAAVSETVGLARERVG-AGAA 159

Query: 122 KLVNSILRRVSREKIELLQRI----------------AGISIIPEWFKERLENF-----Y 160
           + VN++LRRV+   +E                     A +   P W    L         
Sbjct: 160 QFVNAVLRRVAERPLEEWLTRVADAADPGGADTVARLAAVESHPAWVVRALRESLVGSGR 219

Query: 161 GKERVLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217
               + A   A  +P  + L  +  +   +  A +  AV        L         +P 
Sbjct: 220 PAAELAAALVADNAPPRVTLVARPGLVSSQELAEQSGAVPAGLAPTALVLSGGDPGDVPA 279

Query: 218 FAEGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTAL 269
             +G+  VQD  +       V+      +   LD+CA P        A     GA++ A 
Sbjct: 280 VRDGLAGVQDEGSQLVTLAFVEAEVAGRDERWLDMCAGPGGKAALLGALAAQRGARLVAN 339

Query: 270 DVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326
           +V   R   +R  L  +   A  ++   DA      +   +D VL+DAPC+  G +RR P
Sbjct: 340 EVQPHRARLVRQALRAVPGEAVEEVRTGDARTVGELEPGAYDRVLLDAPCTGLGALRRRP 399

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV---QKVLRS 383
           +  W R   D+   A  QR+LL   ++ V+PGG+V +  CS    +++ VV    +    
Sbjct: 400 ESRWRRTPADLATLAALQRELLASAVAAVRPGGVVGYVTCSPHLAETQLVVLDAVRAAAR 459

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  PV +V       +       +     +++ P +         G D      LRR
Sbjct: 460 AGTPVAVVDAAPVMARVAPAWEPVPGRQDVQLWPHV--------HGTDAMHLTLLRR 508


>gi|237748561|ref|ZP_04579041.1| sun family protein [Oxalobacter formigenes OXCC13]
 gi|229379923|gb|EEO30014.1| sun family protein [Oxalobacter formigenes OXCC13]
          Length = 418

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/445 (20%), Positives = 166/445 (37%), Gaps = 56/445 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L  V++       ++   + +     L  R++  V   V   LR       + +    
Sbjct: 13  QVLREVLQFSGPADVVISRYFREHP--KLGMRERGAVAEAVYAILRNRL----IYNNFSE 66

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S        +++L+ + +A I  +D       +                           
Sbjct: 67  SGY---GPQMRRLVLLGLADIYGVDSIGGIDENETAWL-------------------NHV 104

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
            +           + +PEW  +RL    G+E    ++    +P  +DL +       +  
Sbjct: 105 SKVDRSQLPQKMQANLPEWLYDRLAEQIGEEETGKLAAVLNTPAPLDLRINTLKIKPDEV 164

Query: 190 AHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              L+ V +              +   ++ ++P F +G   VQD  + +  Q+ G     
Sbjct: 165 MKVLSEVPVECAPTPFASTGIRLQKKIALQNMPLFRDGGVEVQDEGSQLLAQIVGAKRGE 224

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296
            V+D CA  GGKT      + +  ++ A DVS +RL K++  L R  L          E 
Sbjct: 225 MVVDFCAGAGGKTLALGCAMRNTGRLYAFDVSDKRLAKMKPRLARSGLSNVHPIQIAHER 284

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           DA         D VL+D+PCS  GT+RR+PD+ W +  + I +    Q  +L      VK
Sbjct: 285 DARIKRLAGKADRVLIDSPCSGLGTLRRNPDLKWRQTPETITEMTEKQHAILESAARLVK 344

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CSL + +++ +V+  L+       LVP++                 ++++ 
Sbjct: 345 VGGRLVYATCSLLEDENDRIVEDFLKK-DDRFALVPMSKVLADGKVNLEMGD---YLKLM 400

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P             DGFFA    R+
Sbjct: 401 PH--------QHQTDGFFAAVFERV 417


>gi|241664927|ref|YP_002983287.1| sun protein [Ralstonia pickettii 12D]
 gi|240866954|gb|ACS64615.1| sun protein [Ralstonia pickettii 12D]
          Length = 443

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 104/438 (23%), Positives = 169/438 (38%), Gaps = 34/438 (7%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           +R+  +L   +D         +     +  V+ +     R+L   D ++  ++       
Sbjct: 22  LRQGTALPQAIDAVCQGQPAPV-----RGAVQDLAYRATRWLGSTDWLIRTLIPRPPAEG 76

Query: 79  KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                 LLRV++AQ+L   +    + VVD  V  A  D +  H   ++N +LRR  RE+ 
Sbjct: 77  AA---NLLRVALAQLLDDPLPYAPFTVVDQTVTAASADPKLSHGKGMINGVLRRFLREQQ 133

Query: 137 ----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186
               ++    +  +  P W+ + + + Y       ++     P  +       + V   +
Sbjct: 134 ALVADMQADPSAATNYPTWWIDAVRSAYPDTWQTILAAGNRRPPMVLRVNPRRIAVDAYL 193

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
            + A                     +  LPGFA+G   VQDA A +   L        VL
Sbjct: 194 ASLAEAGIDAERIGEQAVRLARAVPVSELPGFADGAVSVQDAGAQLAATLLDVAPGQRVL 253

Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302
           D CAAPGGKT     +  G  VTAL+    R  ++  NL RL+  A            + 
Sbjct: 254 DACAAPGGKTGHLLELADGLDVTALESDAARAVRIHENLARLNQSATICVGDAAKPDTWW 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +L D PCS+ G +RRHPD+ W R   D+   A  QR ++    + +KPGG +V
Sbjct: 314 DGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALAGLQRDIVRALWACLKPGGKLV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CS+   + E+  Q   R     + L         S D A                  
Sbjct: 374 YVTCSIFPTEGEDQAQWFERHLEDAIRLHAPGQLLPVSPDAAQTS----------GFAAG 423

Query: 423 IDGVSSGMDGFFAVALRR 440
              +    DGFF    ++
Sbjct: 424 ASPLPLDHDGFFYAVFQK 441


>gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
           muelleri ATCC 29453]
 gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
           muelleri ATCC 29453]
          Length = 421

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 108/447 (24%), Positives = 184/447 (41%), Gaps = 50/447 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++  L  V     +L+  L      +    LS +D+ +++ I     RF   +  +L  
Sbjct: 9   LATQTLFAVE-NGKNLSDELAHIIVQNP--ELSPQDKGMLQDIAYGCQRFSGSLKYMLGK 65

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +L   +      L+  L V++ Q+ Y   A +AVV+ AV    +    ++ +   N+ILR
Sbjct: 66  LLNKPID--NKVLEHYLLVALYQLNYTRNAPHAVVNEAVSNIAKIGRGQYRS-FANAILR 122

Query: 130 RVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           R  RE+                +P W  + L+N Y K     +  A  S   + L V   
Sbjct: 123 RFLREQDGLNKACQFNDVAKYNLPIWLIQLLKNQYPKHW-HNMVTAFQSRPPLTLRVNRR 181

Query: 186 IE------TWAHKLNAVMLPTGGIRLKEL-PESIVSLPGFAEGVWWVQDASASIPVQLFG 238
                       +LN          ++   P  +  LP F EGV  VQD  A     L  
Sbjct: 182 HANSEQYFKLLQELNIQAKVLDEYAIRITEPIPVNQLPKFTEGVVSVQDFGAQQAAYLLN 241

Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
                 VLD CAAPGGKT  ++  +   V ALD+  +RL +++ NL RL+  A       
Sbjct: 242 PQAGERVLDACAAPGGKTGHILELADCDVVALDIDNKRLARVQENLSRLNFQATLHCAPA 301

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            +  ++   + FDA+L D PC+++GT++R+PD+ W R   D +K+A  Q  +L +    +
Sbjct: 302 ENVHEWWDGQPFDAILADVPCTASGTMKRNPDIKWLRRPTDALKTAKQQEAMLDELWGTL 361

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG ++ + CS+  +++    QK  +     +                  L  E  +  
Sbjct: 362 KVGGRMLLATCSIFAEENSLQCQKFNKRHNDAI------------------LQEEKML-- 401

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
            P+  +         DGF+     +  
Sbjct: 402 LPNEKQ---------DGFYYALFVKQA 419


>gi|325145434|gb|EGC67710.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240013]
          Length = 419

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|134098684|ref|YP_001104345.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911307|emb|CAM01420.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 430

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 94/447 (21%), Positives = 154/447 (34%), Gaps = 43/447 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           +  +       L         R +S RD  L   +     R    +DAV+       L  
Sbjct: 1   MRDRDAYANLALPALLK---QRRISGRDAALATELTYGACRAQGLLDAVIGECSARPLDG 57

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               L   LR+   Q+L   +  +A V   V+  + +  +R  A   N++LRR+S    +
Sbjct: 58  IDPELLDALRLGAYQLLRTRIPAHAAVASTVDIVRAESGSRQ-AGFANAVLRRISERDEQ 116

Query: 138 LLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                            +A     P W  +   +  G       +          + +  
Sbjct: 117 EWIDRLAPARDDDPVGHLALRYAHPRWIAQSFADALGSVGAELEAALAADDARPAVHLTA 176

Query: 185 DIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS----IP 233
                + +        +       G+ L         L    EG   VQD  +       
Sbjct: 177 RPGEISAEELAAITGGDEAPYSPYGVHLDSGAGDPGDLEPVREGFASVQDEGSQLVAVAL 236

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
            ++     +L  LDLCA PGGK   L          LD  ++   +           + +
Sbjct: 237 SRVEVQGPDLRWLDLCAGPGGKANLLGSLVTMDGGTLDAVEQAPHRADLVRRSTDGLSVE 296

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +   D  D   +  +D VLVDAPC+  G +RR P+  W R  DD+ + A  QR+LLL  +
Sbjct: 297 VHVADGRDPGLEPGYDRVLVDAPCTGLGALRRRPEARWRRRPDDVAELAKLQRELLLSAV 356

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
              + GG+V +  CS    ++E VV  V+R     VE +     +    D+    +    
Sbjct: 357 RLTREGGVVAYVVCSPHLSETEGVVSDVVRR--AGVEQLDARPYFPGVPDLGDGPA---- 410

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++ P           G D  F   LR
Sbjct: 411 VQLWPH--------RHGTDAMFCALLR 429


>gi|296157162|ref|ZP_06839998.1| Fmu (Sun) domain protein [Burkholderia sp. Ch1-1]
 gi|295892498|gb|EFG72280.1| Fmu (Sun) domain protein [Burkholderia sp. Ch1-1]
          Length = 419

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 156/443 (35%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F             
Sbjct: 72  PARRMA-------LLGLMQ------------------TAGRNALKPFVSEQELSWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +     +P+W  + L   +  + +  ++ A   P  +DL         +   
Sbjct: 107 KIDPESLPLRIRLNLPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKASRDDVL 166

Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           + L+   +  G                +  L  F  G   VQD  + +   L        
Sbjct: 167 NALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A D+S+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           +         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 SKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E VV++ L   P    +   +    + ID+ M      ++ + P
Sbjct: 347 GGRLVYATCSILEAENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGD----YLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|307947083|ref|ZP_07662418.1| Sun protein [Roseibium sp. TrichSKD4]
 gi|307770747|gb|EFO29973.1| Sun protein [Roseibium sp. TrichSKD4]
          Length = 430

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 156/453 (34%), Gaps = 34/453 (7%)

Query: 1   MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK G   RL ++  +L  +  +       L        F      D+  +  +V   LR 
Sbjct: 1   MKDGG--RLAAAIEVLDEIENRHRPAQVALKDWGNQHRFAG--SGDRTAIGNLVFDVLRH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
              + A L                  L + V  +++   +     V      A     ++
Sbjct: 57  KASLSARLRSTTNR-----------HLVLGVYALVWGKGMEQLDTVLETDRHAPEPLSDQ 105

Query: 119 H---FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
               F+    S +   +   +      + ++   +      +    +  V   ++   S 
Sbjct: 106 EKGLFSGQATSNIAAHAAADVPEWLWPSFVTCFGDKAVAEGKALATRAPVDLRANLLKSN 165

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
               L     ++  A  +    L             + +  G+ +G + +QD ++ I   
Sbjct: 166 REKLLDKLSHVDAAACDVAETGLRIVPKPGALRMPHVQAEEGYRKGWFELQDEASQIVAA 225

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G      VLD CA  GGKT  +   + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 LSGAKPGAQVLDFCAGGGGKTLAMAGAMQNKGQIYAFDADRLRLAPIHERLQRAGVRNVQ 285

Query: 293 IIE-MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           + +         +   D V  DAPC+ TG  RR PD  W      +      QR +L + 
Sbjct: 286 VRDPAATNLTDLEGSMDLVFTDAPCTGTGVWRRRPDSKWRLTEKAVQDRIEDQRSVLGRA 345

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSP 409
             +VKPGG +V+  CS+  +++ + +   LR  P    V      +A +        ++ 
Sbjct: 346 AQYVKPGGRLVYVTCSVLPEENTDQIDWFLRQQPEFQSVSAAEAWTAAYPGKKAPTYIND 405

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            G I +TP         S+  DGFF   L R  
Sbjct: 406 RGDILLTPG--------STDTDGFFCALLERRA 430


>gi|309378544|emb|CBX22816.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 419

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L   +  +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVL--VHIRAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKYW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLSRHNDA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776]
 gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776]
          Length = 471

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 167/426 (39%), Gaps = 50/426 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++ ++L         +  + D     +    LS  D+ L   ++   +R    + A+
Sbjct: 20  ARELAFNVLEAHHAGNKHIGEVFDQAVDRT---TLSPSDRRLAYELICGIVRRQSTLQAL 76

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  ++   +   +  LQ ++++ + QI L   +  +A V   VE AKR      +   VN
Sbjct: 77  LMSLVHRQMETLERPLQTIIKIGLYQIFLCQGIPQHAAVHETVELAKRANL--RWGGFVN 134

Query: 126 SILRRVSREKIELL--------------------------------QRIAGISIIPEWFK 153
            +LR   +   E +                                  IA     P    
Sbjct: 135 GVLRSAIQLMTENILTAPSSKALPIGHHQYRELTTDLFPSPTLTPGSYIAAAFSFPHDLV 194

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE 210
           ER    YG E  + ++          L V     D ET+  KL A         L E   
Sbjct: 195 ERWVGQYGVEATIRMAFWFNQVTETALRVNLLKTDRETFRQKLFAADFVAEAGDLPETIR 254

Query: 211 -----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
                 I +LPGF EG + VQD SA    +         VLDLCAAPG KT  +   + +
Sbjct: 255 LLSTVRISTLPGFPEGEFSVQDLSAQHAARRLNPQPGEVVLDLCAAPGSKTCHMAELMQN 314

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGT 321
             ++ A D    R+ ++  N +RL L     I +       P   FD VL D PCS+TG 
Sbjct: 315 QGEIIAADTHGGRIRQVYENAERLGLSIIRTITIGPRGENLPSMEFDKVLADVPCSNTGV 374

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + + P+  W      + +    Q  +L      V+ GG +++S CS++  ++EE+VQ+ L
Sbjct: 375 LGKRPEARWKYSPAHLDELREMQATILRTAAGKVRIGGRILYSTCSIEPLENEEIVQQFL 434

Query: 382 RSSPIP 387
            ++   
Sbjct: 435 AATSEA 440


>gi|330466983|ref|YP_004404726.1| Fmu (Sun) domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328809954|gb|AEB44126.1| Fmu (Sun) domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 450

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 152/449 (33%), Gaps = 44/449 (9%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           R       +L     +     L  RD      +   TLR    +DA+L       + R  
Sbjct: 17  RDDAYANLVLPSILRE---EGLFGRDAAFATELTYGTLRHSGTLDAILTSAAGRDVQRID 73

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             ++  LR+   Q+L+  V  +A V   V+  +     +      N++LR V+   ++  
Sbjct: 74  PPVRDALRIGAYQLLHTRVPAHAAVSSTVDLVRMV--GQGATGFANAVLREVAACDLDTW 131

Query: 140 Q-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDACISPLYIDLTVKF 184
                          +A     P+W           +      +         + L  + 
Sbjct: 132 VSRLAPSMETDPIGHLALAHSHPQWIVRAFSEALDGDLGETTRLLIENNERPPVHLCARP 191

Query: 185 ---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              D    A              +     +   +   A+G   VQD  + +         
Sbjct: 192 GLADPVELADASGGAPGAFSPYAVYLGGGAPGDVAAVADGRAHVQDEGSQLVANALAVAP 251

Query: 242 NL----SVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   LDLCA PGGK     A      A+VTA++V++ R   +      L +     
Sbjct: 252 IDGPDGRWLDLCAGPGGKAGLLGALAAQRDARVTAVEVAEHRARLVEGATRGLPVTVLHT 311

Query: 294 IEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                      P+  FD VLVDAPC+  G++RR P+  W R   D+      QR+LL  G
Sbjct: 312 DGRLVGAEPKLPEGHFDRVLVDAPCTGLGSLRRRPESRWRRQPSDLPALTRLQRELLTAG 371

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           +  V+PGG+V +  CS    ++   V +  R S   V+ V         +     L    
Sbjct: 372 LRAVRPGGVVAYVTCSPHTVETHVTVTEAARRSGASVDFVDARPLLPAGMP---GLGDGP 428

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +++ P           G D  F   LRR
Sbjct: 429 TVQLWPH--------RHGTDAMFLAVLRR 449


>gi|269956515|ref|YP_003326304.1| Fmu (Sun) domain-containing protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305196|gb|ACZ30746.1| Fmu (Sun) domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 517

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 162/480 (33%), Gaps = 57/480 (11%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V         +L     +   R ++ RD      +   TLR   R DA
Sbjct: 48  PARTAAFDVLRDVDGSDAYANLVLPPLLRE---RGITGRDAAFATELTYGTLRLRGRYDA 104

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L   +   L R    +  +LR+   QIL + V  +A V   V   +        ++LVN
Sbjct: 105 ILTRCVDRPLDRLDPDVLDVLRLGAHQILGMRVPTHAAVSETVALTRDRVGT-GASQLVN 163

Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE---------R 164
           ++LRRV+   +                  A     P W    L      +          
Sbjct: 164 AVLRRVTTTPLTDWLDELRADAPDPVTASAVTGSHPVWIARALREALAADGRGGADLDAE 223

Query: 165 VLAISDACISPLYIDLTVKFD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217
           + A+ DA  +   + L  +           T    +           L    +  +S+P 
Sbjct: 224 LDALLDADNAAPRVTLVARPGLITPDDVRATAPDGITLHPGRWLPTALILGGQDPLSVPA 283

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNL----SVLDLCAAPGGKTA----QLIVSGAKVTAL 269
            A+    VQD  +                   LDLCA PGGK +         GA + A 
Sbjct: 284 VADARAGVQDEGSQAVALALAAAPLEGRDARWLDLCAGPGGKASLLAALASQRGATIVAN 343

Query: 270 DVSKRR---LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
           +V+  R   + K    +    +      +           +D VLVDAPC+  G +RR P
Sbjct: 344 EVAPHRANLVRKALRAIPDGVVEQVRTGDGRDVGEQEPGAYDRVLVDAPCTGLGALRRRP 403

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-- 384
           +  W R   D+      QR LL   +  V+ GG+V +  CS    ++  VV  VLR    
Sbjct: 404 ESRWRRTPADLSALTGLQRDLLSSALDAVRVGGVVAYVTCSPHLAETRVVVDDVLRRRAV 463

Query: 385 ---PIPVELVPLNSAYWK-SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              P    L    +     +    + L     +++ P +         G D      LRR
Sbjct: 464 DGIPDAERLDAREAVRAIVNPGTDIPLGERDDVQLWPHV--------HGTDAMHLTLLRR 515


>gi|256830606|ref|YP_003159334.1| sun protein [Desulfomicrobium baculatum DSM 4028]
 gi|256579782|gb|ACU90918.1| sun protein [Desulfomicrobium baculatum DSM 4028]
          Length = 424

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 157/416 (37%), Gaps = 28/416 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L   +  +  L   +D           +  D+ L   +    LR   RID +
Sbjct: 6   ARRLALDILRRTLDHKQDLQAAVDEVLNPVQ----AGPDKGLATELAYGYLRMRGRIDFL 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L  +L + + +    ++++L V++ ++L+L  + DYA +D AV   +  + ++   K+ N
Sbjct: 62  LSQLLKNPV-QTSPIMKRILGVAMYELLFLSRIPDYATLDWAVTLVRE-RLDQTMGKVAN 119

Query: 126 S-------------ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
                                +     Q ++     P+W        YGKE+  A   A 
Sbjct: 120 GVLRSLLRLGLSVRFEEYYQTKTAGHDQFLSAWYSCPQWLARMWLGSYGKEQTQAFLQAT 179

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW-----WVQD 227
           +S   + + +       A  L   + P           ++   P F +          Q 
Sbjct: 180 LSAPPLGVRINRTHAQ-AETLRENLQPLQQDSSNWGF-ALTQWPEFLQHAVAEGAATRQS 237

Query: 228 ASASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
            +A   +   G  +  S + D CA  GGKT  +   G  V A DV+  RL +L+    RL
Sbjct: 238 LAAQKIMDALGVEHWPSPVLDACAGRGGKTYLMSEQGKNVWASDVNVFRLRQLKAEGARL 297

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                         Y  ++    + +D PCS  G + R PD+ W R   D       Q +
Sbjct: 298 GFDIPAFRSQGQGPYPLRQTPRTIFLDVPCSGLGVLSRRPDIKWKRTAADCAGLVKLQEE 357

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
           +L      +  GG +V+  C+L+ +++E+ + +     P    L    S   + + 
Sbjct: 358 ILRAAADLLTSGGCLVYVTCTLNPEENEKQIDRFASLHPEFSRLRQAQSGPAEGLG 413


>gi|320450772|ref|YP_004202868.1| 16S rRNA M [Thermus scotoductus SA-01]
 gi|320150941|gb|ADW22319.1| 16S rRNA M [Thermus scotoductus SA-01]
          Length = 399

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 177/441 (40%), Gaps = 46/441 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   + R ++  +L  V R          L           +RD+     +V   LR L
Sbjct: 1   MRP-ESPRALAVRILLEVERGGR----AQLLLDRALDRLSWPERDRAYATHLVYGVLRRL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D +L+  L     R    ++ +LR+   + L    AD+A V   VE+AKR   +   
Sbjct: 56  RYLDFLLEPHLRKP-ERLPPQVRWILRLGAWEWL-AGKADHARVSPWVEEAKRV--SPRL 111

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           A LVN++LRR+S  +     R++    +P+W  +  + F+G+      ++    P  + +
Sbjct: 112 AGLVNAVLRRLSLREAPECVRLS----LPDWLCQAWQGFFGQVA---FAEGFNEPAPLFV 164

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T    +E              G +             F+      Q+ ++    QL   +
Sbjct: 165 TAYRSVEGLKPGPIPDSYLWEGGKTD-----------FSALGLQPQNPASLFAAQLLSPV 213

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLC   G K   L   GA++ + D++ RR E       +L L            
Sbjct: 214 PGEKVLDLCGGAGLKAFYLAAKGAEMVSYDLNPRRQEAGEKTARKLGLRVIY--RTQDLR 271

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               +    VL+DAPC+ TGT R HP++ +    +D  + A  Q KLL       + GG+
Sbjct: 272 EPLSEKAKKVLLDAPCTGTGTFRSHPELRYRLAPEDPRRMAELQLKLLETAARATEEGGV 331

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L +++ E V +  L   P  V              + + ++PEG         
Sbjct: 332 LVYSVCTLTEEEGEGVARAFLARHPEFVPEPIACPFPALRSGLGVYVAPEG--------- 382

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                   G+DGF+ + LR++
Sbjct: 383 --------GLDGFYYLRLRKV 395


>gi|257068774|ref|YP_003155029.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810]
 gi|256559592|gb|ACU85439.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810]
          Length = 551

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 167/479 (34%), Gaps = 50/479 (10%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              +R V+   L  V  +      +L           +S RD      +   +LR   R+
Sbjct: 62  STPSRQVALEGLRLVREEDSYANLVLPRLLRSHR---VSGRDAAFTTELFYGSLRAQGRL 118

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           DA+L   +   L     +L+ +LR+   Q+L + VA +A     V  A+ +      A  
Sbjct: 119 DAILTACVDRPLEEVDPALRDVLRLGAYQLLDMSVAPHAATSETVALARAEVG-AGGASF 177

Query: 124 VNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF-----YGKERV 165
           VN++LRRV  + +                  +A +   P W    L +        +E +
Sbjct: 178 VNAVLRRVGEKDLPQWIAEVAPDRDQDPTGHLAVVHSHPRWVVRALTDALAGHGRSREEI 237

Query: 166 LAISDACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
             +  A  +   + L ++  +          A                   +    EG  
Sbjct: 238 DELLAAQNAAPAVSLVMRPGLTDLDELIDHGASQGHLSIFGASWPAGDPGGMDPVKEGRV 297

Query: 224 WVQDASASIPVQLFGTLNNL-------SVLDLCAAPGGKTA----QLIVSGAKVTALDVS 272
            VQD  + +         +          LDLCA PGGKTA      I   A + A+++ 
Sbjct: 298 AVQDEGSQLAALALALGADDLVQGDDAHWLDLCAGPGGKTALLGGLTIDHDADLLAVELQ 357

Query: 273 KRRLEKLRC--NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDV 328
           + R E +       R      +    D      +    F  VL D PCS  G +RR P+ 
Sbjct: 358 EHRTELVDRAVATLREAGCEIETRTADGTVLGAELPGRFSRVLADVPCSGLGALRRRPEA 417

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            W R   DI +    QR LL   +    PGG+V +  CS    ++  +V  V++      
Sbjct: 418 RWRRSPGDIGQLGGLQRDLLASALDAAAPGGVVAYVTCSPHLAETRLIVADVMKRRTDAE 477

Query: 389 ELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           +L   ++     +  A      G    +++ P +         G D  +   LR+L  P
Sbjct: 478 QLDARDAVRAGVLPAAQQDLDLGAGPAVQLWPHV--------HGTDAMYISLLRKLPAP 528


>gi|15676040|ref|NP_273170.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
 gi|7225328|gb|AAF40571.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
 gi|316985958|gb|EFV64897.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis H44/76]
 gi|325141257|gb|EGC63756.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis CU385]
 gi|325199326|gb|ADY94781.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis H44/76]
          Length = 419

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L  ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLMAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL        
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDAVL D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADAQDLSAWYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L       EL+                    
Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM
           3638]
 gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 450

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/454 (20%), Positives = 181/454 (39%), Gaps = 37/454 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            + +  L  V  K +S    L+  +     +   +  + +  A V    ++  +ID +++
Sbjct: 11  EIVADALMLVEEKELSSKHALEKIFKKVEGKDKEKA-RGIAHAYVFEIEKWRAKIDFIIN 69

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120
            VL  S +      L  LLR+ V ++ +  +           VV    +  +    N   
Sbjct: 70  SVLRGSKVEDLDPYLANLLRIGVFEMKFKKINPAIATDSIVRVVKEKFDLTRAKFANAIL 129

Query: 121 AK--LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +    N        ++ + ++ +A     P W+ E + +  G +  + +  + + P   
Sbjct: 130 REVEKFNVEKALKRLKEKDRIEWLAVRFSHPRWYVEYVIDLLGYDEAVRLLLSNLKPQRY 189

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + +     DIE     L    +      + +        + I  L G+ +G + +QD +
Sbjct: 190 YVRINSLKADIEKVKKYLEENGVRVAYTPVDDVLKVLEYEKPITKLEGYKKGYFVIQDLA 249

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++    +        VLDL AAPG KT      + +  ++ A+D S  RL +++  + +L
Sbjct: 250 SAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYERLVRMKERMKKL 309

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +    ++  D   Y  K+ FD +++DAPCSS+GT R+ P+V W  + + I +    QR 
Sbjct: 310 GVKNVKLVYADGQSYIDKEKFDKIILDAPCSSSGTYRQFPEVKWRFNEEKIKRIISVQRN 369

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L+     +K GG + +S CS+   ++EE V   L       E+V    ++    D    
Sbjct: 370 MLINAFRNLKEGGEMTYSTCSVRIDENEENVMFGLER---GFEIVDYPFSWG---DKGFL 423

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +   R                + FF   LR+
Sbjct: 424 EIGDKTFRTWTH--------RHDCNSFFIAKLRK 449


>gi|91784970|ref|YP_560176.1| NOL1/NOP2/Sun family protein [Burkholderia xenovorans LB400]
 gi|91688924|gb|ABE32124.1| NOL1/NOP2/Sun family protein [Burkholderia xenovorans LB400]
          Length = 419

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 156/443 (35%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F             
Sbjct: 72  PARRMA-------LLGLMQ------------------TAGRNALKPFVSEQELSWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +     +P+W  + L   +  + +  ++ A   P  +DL         +   
Sbjct: 107 KIDPESLPLRIRLNLPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKASRDDVL 166

Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           + L+   +  G                +  L  F  G   VQD  + +   L        
Sbjct: 167 NALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A DVS+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDVSERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           +         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 SKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E VV++ L   P    +   +    + ID+ M      ++ + P
Sbjct: 347 GGRLVYATCSILEAENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGD----YLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|149917223|ref|ZP_01905722.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis
           pacifica SIR-1]
 gi|149821830|gb|EDM81224.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis
           pacifica SIR-1]
          Length = 453

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 166/436 (38%), Gaps = 37/436 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++   L  + +++     +L  +     F  L  RD+ L+  +V   LR   R+DA
Sbjct: 12  NPRRLAVRTLREIEQRQGFSNRILSEQLE--RFPDLDPRDRGLITTLVYGVLRHRGRLDA 69

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            LD        + K  L+ +LRV+  ++L LD         A + AKR         ++ 
Sbjct: 70  HLDAAADKP-HKLKGELRTILRVAAYEVLELDRPLPIASAEASKAAKRIDPRGRLKGMIA 128

Query: 126 SILRR--VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
            IL +    +  ++   R      +P W  ER     G E + A + A      +DL V 
Sbjct: 129 KILAKVAKDKADLDARLRPGQRWSLPAWLVERWSAQLGAEGLEARARALTEVPSVDLRVD 188

Query: 184 FDIETWAH---------------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
               T                  +L                  +   P F +G+  +Q  
Sbjct: 189 LSRSTRDAVREQLVADHPSVRFVELPEAAGDQPQCLRVRGGGDLFHGPLFEDGLIAIQSL 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRL-EKLRCNLD 284
            +   V++         LD CA  G KT Q+     +   + A D S  RL E  R    
Sbjct: 249 GSQQAVRVLDPQPGERTLDACAGMGTKTIQIAEHMGRRGALVASDASAERLDELERSARA 308

Query: 285 RLHLYA----EDIIEMDA---------FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           R+ L A      ++  D               +  FDAVL+DAPC+  G + RHP++ WT
Sbjct: 309 RIELDADGIALQVVHADLAGPELPAELDAPPDEAGFDAVLLDAPCTGLGNLARHPELRWT 368

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
               D+++ A  Q  LL +  ++V+PGG +V++ CSL+ ++   +V   L +        
Sbjct: 369 SQASDVLERAGLQASLLERCAAWVRPGGRLVYAVCSLEPEEGPAIVDAFLATEAGAAFEQ 428

Query: 392 PLNSAYWKSIDMAMAL 407
               A+      +   
Sbjct: 429 TKREAWTPEAQRSDGF 444


>gi|261416620|ref|YP_003250303.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373076|gb|ACX75821.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326268|gb|ADL25469.1| ribosomal RNA small subunit methyltransferase B [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 419

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 185/457 (40%), Gaps = 70/457 (15%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L    R    +               LS         +     R    ++  +
Sbjct: 5   REEAFRVLLLWQRDGSFI-----------KESGLSP----FAMELALGVCRRHLYLEYFV 49

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             +            + +L + + Q+ ++DV DYA ++ +VE AK        A+LVN++
Sbjct: 50  KSLTKKLP---SLEARVILEMGLFQMFFMDVPDYAAINDSVELAKSANLGESTARLVNAV 106

Query: 128 LRRVSRE-----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           LR   R+       + ++R++  + +PEW   R  + YG +R  A++ A +      + V
Sbjct: 107 LRTARRQGEPALPPQRVRRVSVENSVPEWLVRRWFDVYGGDRAEALAKATLERPTEWIRV 166

Query: 183 KFDIET---WAHKLNAVMLPTGGIRLKELPESIV-----SLPGFAEGVWWVQDASASIPV 234
                +    A K+          R  E+P  +      +LP F +G +  Q+ SA   V
Sbjct: 167 NLQKTSAPVLAEKIGITGASILYDRFIEIPRDVGVKLLLALPEFVKGQFSFQNPSAFEVV 226

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAED 292
           +L      L V D CAAPGGKTA +    +  ++ A D S  RLEK++  ++RL L    
Sbjct: 227 KLLDLKPGLKVWDACAAPGGKTALMAEMDSSLEILASDSSASRLEKMQDLMNRLGLTNIK 286

Query: 293 IIEMD----------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
              +D                +  FD +L+D PCS+ G I R P+ ++    + I + A 
Sbjct: 287 TEVIDLAPASATSPQQSTLSSEAKFDRILLDVPCSNMGVIARRPESVYRMTPESINEVAE 346

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q K+L    + + PGG +V++ CS D  ++  V+ + ++  P  V++            
Sbjct: 347 LQFKILENASTALAPGGRLVYATCSPDPTETTRVIARFVKVHPEFVKVGEP--------- 397

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                       + P + +         DGFFA AL 
Sbjct: 398 ------------VLPGLKDSRL------DGFFAQALE 416


>gi|261391650|emb|CAX49098.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
           methyltransferase) [Neisseria meningitidis 8013]
          Length = 419

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L   +  +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVL--VHIRAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|325131147|gb|EGC53868.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis OX99.30304]
 gi|325137171|gb|EGC59766.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M0579]
 gi|325203053|gb|ADY98507.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240149]
 gi|325207149|gb|ADZ02601.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis NZ-05/33]
          Length = 419

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L  ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLMAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL        
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDAVL D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADAQDLSAWYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L       EL+                    
Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|257455153|ref|ZP_05620391.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter
           aerosaccus SK60]
 gi|257447486|gb|EEV22491.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter
           aerosaccus SK60]
          Length = 450

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 109/467 (23%), Positives = 196/467 (41%), Gaps = 53/467 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S +N R      L  + +              D     +S++D+     ++  TLR    
Sbjct: 6   SQLNTRAKVVATLERIQQGES------LSSLLDPLLNQVSEKDKGFAHELLLGTLRQWWA 59

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           +  + + ++   +      +   L + + Q+LY+D  DYA +   VE  K+  +    A 
Sbjct: 60  LARIGESLIEHEVT--DKGVWAALNIGLYQLLYMDTPDYAAIGETVEAVKQLDKGYG-AG 116

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           L+N+ILR+V +   +  ++I     +P W  ++L+  +G+     +  A   P  I L V
Sbjct: 117 LINAILRKVQKNPAKFAKKIEKNHSLPNWLAKQLKQDWGEYYAE-LGQALRQPAPIFLRV 175

Query: 183 ---KFDIETWAHKLNAVMLPTGGIRLKELPE---------SIVSLPGFAEGVWWVQDASA 230
                 +E +A  L    +    + +               I  LP FAEG   VQD  A
Sbjct: 176 NRKFCSVEDYADILTQQGIGFALVSIGFEKVQTIQLTDAIRITDLPKFAEGWVSVQDRHA 235

Query: 231 S---IPVQLFGTLNNLSVLDLCAAPGGKTAQ------------LIVSGAKVTALDVSKRR 275
                 +       +L+VLD C APGGK A                + A V ALD  ++R
Sbjct: 236 QLSAHILASLALDKSLTVLDACTAPGGKLAHLLELDESKTFHVKHQNIAHVIALDNDEKR 295

Query: 276 LEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           L+++  NL+RL L      ++  DA  +     FD +++DAPC++TG IRRHPD+   R 
Sbjct: 296 LQRVSQNLERLQLNQENVQLVCDDATTFQADTQFDVIVLDAPCTATGVIRRHPDIALLRT 355

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
             D+ ++A  Q ++L      +   G +++  CS+ K ++E  +Q  L +     ++V  
Sbjct: 356 EQDVGQTAALQARILANCWHNLATNGYLLYITCSMLKAENENQLQAFLATHK-AAQIVDF 414

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +      +++   +      +  P          +  DGF+   L++
Sbjct: 415 S------LNLPNQIKQNIGYQCLP-------LHQNDGDGFYYALLQK 448


>gi|325129148|gb|EGC51996.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis N1568]
          Length = 419

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 200/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L   +  +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGHNLQDVL--VHIRAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +P           E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|198282170|ref|YP_002218491.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246691|gb|ACH82284.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 431

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 107/452 (23%), Positives = 186/452 (41%), Gaps = 48/452 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            SG   R  +  +L  V     ++   L           L+  D+  ++ +V  TLR   
Sbjct: 11  TSGGAVRKAAITVLRGVD-SGQTVDAAL-------LPVSLTGTDRATLQWLVLGTLREFL 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + A+   +L      +   L  LL +++ ++ +     +AVV+  VE  +  K+     
Sbjct: 63  SVQALSAKLLRKPWREEDADLGFLLSLALFELRHGQRPAFAVVNDWVEMTEAVKKP-WAR 121

Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            L+N++LRR  RE+  L   +       P W   RL   Y ++   AI+ A  S   + L
Sbjct: 122 GLMNAVLRRYLREREVLDTALVDRDLGHPAWLAARLRAAYPQDW-PAIAAANNSAPPLWL 180

Query: 181 TVKFDIET--------WAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASAS 231
            V                    A  +      L       + +LPG+  G   VQD +A 
Sbjct: 181 RVNTQRVDPGAYRRLLAEQGREAEGVTWSAAALCLPASVPVATLPGWDAGWVAVQDGAAQ 240

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLH--L 288
           +   +        +LD CAAPGGKTA L   G  ++ ALD S  RL ++R  L+R    +
Sbjct: 241 LAAHILAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQGGEV 300

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
           + +     +   +   + +DA+L+DAPC+ TG IRRHPD+   R  +D+ ++   Q +LL
Sbjct: 301 HLQAADAAETATWWNGETYDAILLDAPCTGTGVIRRHPDIRLRRQPEDVAEAVAQQARLL 360

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 ++PGG ++++ CS+  +++EE +   ++       +                  
Sbjct: 361 EGLWPCLRPGGRLLYATCSVLPEENEEQIAAFVQRHSDARRMA----------------- 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   P +  +       MDGF+   L +
Sbjct: 404 -------HP-LTGQRLPGQEDMDGFYYALLEK 427


>gi|134296682|ref|YP_001120417.1| Fmu (Sun) domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134139839|gb|ABO55582.1| Fmu (Sun) domain protein [Burkholderia vietnamiensis G4]
          Length = 420

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 158/446 (35%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q L                       + F     +       
Sbjct: 72  PARRLT-------LLGLMQTL------------------GRNALKPFVSDNEAAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
           +       +   + +P+W  + L   +  + +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRVRTNLPDWIYQALSARFDADELAQLAAALNYPAPLDLRANVQKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 DALRANGIEAGATPFAPNGVRVVGKPALTRLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSIDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P    LVP         D  + L    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENEAIVEQFLADHP-DFVLVPAQKVL---ADQRIELDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|84496642|ref|ZP_00995496.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649]
 gi|84383410|gb|EAP99291.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649]
          Length = 500

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 100/477 (20%), Positives = 165/477 (34%), Gaps = 53/477 (11%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARL +  LL  V                      L  RD      +   TLR     DA
Sbjct: 37  PARLAAYTLLRAVDD-GAYANLEFPAIIRRHK---LDSRDAAFATELAFGTLRMQGFYDA 92

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V++     S       +  +LR+   Q+L + V  +A  D  V  A+        +  VN
Sbjct: 93  VIERAADRSTSTIDSGVLDVLRLGAHQLLGMRVPTHAAADQTVGLARTVSG-AGASGFVN 151

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLE----------NFYGKER 164
           +++RR+S    E                A     PEW    L                  
Sbjct: 152 AVMRRISERTREEWVTQVVPEGGSTAALAVEYSHPEWVVSALRGALLTGGRATAETVDGE 211

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGV 222
           +  + D+   P  + L  +  + T    ++A      T             ++    +  
Sbjct: 212 LRELLDSDNIPAKVSLVARPGLATVDELVDAGATASATSPFGAVLEHGEPGAIAAIRDRR 271

Query: 223 WWVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSK 273
             VQD  + +                  LDLCA PGGK+       + + A + A+++S 
Sbjct: 272 AAVQDEGSQLLSAALAMAPVDSDVPHRWLDLCAGPGGKSGVLGALAVEADADLVAVEISD 331

Query: 274 RRLEKLRCNLD------RLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325
            R + +R  L+      R      ++   D  +    +   +  VLVDAPC+  G +RR 
Sbjct: 332 HRADLVRSTLEPVIALARAAGRRIEVRTTDGREVGEAEPAAYGRVLVDAPCTGLGALRRR 391

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           P+  W R   D+V+    QR LL   +  V PGG+V ++ CS    ++  VV+ VL+   
Sbjct: 392 PEARWRRQPSDLVQLGPLQRDLLRSALDAVAPGGLVGYATCSPHPAETTFVVRDVLKKRD 451

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +         S ++   L     +++ P +         G D  F   LR+  
Sbjct: 452 DIDVVDAREFFRDASGEVLHDLGDGPSVQLWPHV--------HGTDAMFFTLLRKKA 500


>gi|218666805|ref|YP_002424535.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519018|gb|ACK79604.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 434

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 107/452 (23%), Positives = 186/452 (41%), Gaps = 48/452 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            SG   R  +  +L  V     ++   L           L+  D+  ++ +V  TLR   
Sbjct: 14  TSGGAVRKAAITVLRGVD-SGQTVDAAL-------LPVSLTGTDRATLQWLVLGTLREFL 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            + A+   +L      +   L  LL +++ ++ +     +AVV+  VE  +  K+     
Sbjct: 66  SVQALSAKLLRKPWREEDADLGFLLSLALFELRHGQRPAFAVVNDWVEMTEAVKKP-WAR 124

Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            L+N++LRR  RE+  L   +       P W   RL   Y ++   AI+ A  S   + L
Sbjct: 125 GLMNAVLRRYLREREVLDTALVDRDLGHPAWLAARLRAAYPQDW-PAIAAANNSAPPLWL 183

Query: 181 TVKFDIET--------WAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASAS 231
            V                    A  +      L       + +LPG+  G   VQD +A 
Sbjct: 184 RVNTQRVDPGAYRRLLAEQGREAEGVTWSAAALCLPASVPVATLPGWDAGWVAVQDGAAQ 243

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLH--L 288
           +   +        +LD CAAPGGKTA L   G  ++ ALD S  RL ++R  L+R    +
Sbjct: 244 LAAHILAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQGGEV 303

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
           + +     +   +   + +DA+L+DAPC+ TG IRRHPD+   R  +D+ ++   Q +LL
Sbjct: 304 HLQAADAAETATWWNGETYDAILLDAPCTGTGVIRRHPDIRLRRQPEDVAEAVAQQARLL 363

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 ++PGG ++++ CS+  +++EE +   ++       +                  
Sbjct: 364 EGLWPCLRPGGRLLYATCSVLPEENEEQIAAFVQRHSDARRMA----------------- 406

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   P +  +       MDGF+   L +
Sbjct: 407 -------HP-LTGQRLPGQEDMDGFYYALLEK 430


>gi|83312882|ref|YP_423146.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum
           AMB-1]
 gi|82947723|dbj|BAE52587.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum
           AMB-1]
          Length = 428

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 91/445 (20%), Positives = 172/445 (38%), Gaps = 38/445 (8%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL-- 71
           +LS + +       +    +    +  +  +D+  V  +V   LR   RID  L+ +   
Sbjct: 1   MLSEIEKSAKPADSVASFYFKQRRY--IGAKDRRAVAEVVWRVLRRRARIDWWLEHLDHP 58

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                  K   +   RV +A +++  +     +      A   +        + +  + +
Sbjct: 59  ERPNAEGKGGSRA--RV-LADMIFEGIKPEPDLFRGPHSAYPPEPPERRVLDMLAGQKSL 115

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
               +    R       P+W   RL      + + +   A      +DL V       + 
Sbjct: 116 FHRDMPPHVRGE----YPQWLTPRL-AALFGDNLDSEMGAMRDEAPLDLRVNTLKATRDE 170

Query: 189 WAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L    +      L            +V +  +  G+  VQD  + +   L      
Sbjct: 171 AIRALAKEGIKAEPTALSPIGLRLGARVPLVQVQAWRNGLIEVQDEGSQLVALLTDPKPG 230

Query: 243 LSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
            +V+D CA  GGKT   A  + +  ++ A DV++ R+++ +  L R  ++         E
Sbjct: 231 QAVVDYCAGAGGKTLALAAAMQNKGRLVACDVAEWRVDRAQDRLRRAGVHNVTRRVIEGE 290

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D +       FD VLVDAPC+ TGT RR+PD  W     D+++    Q  +L       
Sbjct: 291 SDKWIKRSAGSFDRVLVDAPCTGTGTWRRNPDAKWQFSETDLLELVARQGAILDSAARLT 350

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KPGG ++++ CS+ ++++E+ ++  L + P     VP+   + +       +    W+R+
Sbjct: 351 KPGGRLIYATCSIMREENEDRIEAFLAAHP-DYRPVPVPELWAELAGTPCPVGG-PWLRL 408

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
           +P         + G DGFFA  L +
Sbjct: 409 SPQ--------AHGTDGFFAAVLEK 425


>gi|308388330|gb|ADO30650.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 419

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 197/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L  ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLMAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|261364702|ref|ZP_05977585.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
           ATCC 25996]
 gi|288566995|gb|EFC88555.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
           ATCC 25996]
          Length = 419

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RAAHPELTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    + F    N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+ E L+N Y K     I+ A  S   + L V
Sbjct: 120 ILRRFLRERQKLEASCKKDDVAKHNLPLWWVEYLKNHYPKHW-HNITTALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            +    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHSNAESYLEKLAAEGIAAKALDEYAVTLDEAVPVSRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +   VTALD+ + RL++++ N+DRL      + 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNIDRLGFQTTALT 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDA+L D PC+++G  RR+PDV W R   D  K+A  Q  LL   
Sbjct: 299 CADAQDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +   G ++ + CS+  ++++  +QK L       EL+                    
Sbjct: 359 WQTLTKNGRMLLATCSVFVEENDVQLQKFLNRH-ADAELIESRV---------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIKK 418


>gi|268315920|ref|YP_003289639.1| Fmu (Sun) domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262333454|gb|ACY47251.1| Fmu (Sun) domain protein [Rhodothermus marinus DSM 4252]
          Length = 434

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 157/449 (34%), Gaps = 50/449 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
                +L  ++R  +    +L   +       + +RD+  V   V   LR   R      
Sbjct: 16  EAVVTVLREILRSPLPADTVLQQFFRKHR--KMGKRDRAFVAETVYGMLRHYRR------ 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
               +           LL + V       LD+        A+E A R            +
Sbjct: 68  LAHAARRRADDLRFLTLLYLEVFGFGDAILDLPVRPAERGALEAAARRFREPDLPDDPAA 127

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
            L                +  +P+W          +E V A   A  +P  + + V    
Sbjct: 128 ALG--------------ILYSLPDWLVAAWLEVLPRETVEARCAALKAPAPLTVRVNTLK 173

Query: 185 -DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
            D  T   +L     P+          + E    I     F EG++ VQD  + +   L 
Sbjct: 174 ADRGTVQQRLLEEGFPSRPTPYSPVGLILEEKAFIFRTRAFQEGLFEVQDEGSQLISLLT 233

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  V+D CA  GGKT  L   +    ++ A D+ + RL +LR    R  ++   + 
Sbjct: 234 EARPGQVVVDGCAGGGGKTLHLAALMEGKGRLYAFDIHEARLRELRPRTRRADVHNVRLH 293

Query: 295 EMDAFD----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +               DAVLVDAPCS TG +RR+PD  W    + +      QR++L  
Sbjct: 294 VLPHNRASIVRRLYGKADAVLVDAPCSGTGVLRRNPDAAWKITPERVAALVEQQRQILEA 353

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               V+PGG +V++ CSL   ++E+ +   L + P    +        + I         
Sbjct: 354 YAPLVRPGGRLVYATCSLLPAENEQQIHTFLNAHPEFTLIPAAEVLARQGIAFPHQT--- 410

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                  D   +++  + G DGFFA  L 
Sbjct: 411 -------DAFLRVEPATHGTDGFFAAVLV 432


>gi|56475772|ref|YP_157361.1| sun homolog protein [Aromatoleum aromaticum EbN1]
 gi|56311815|emb|CAI06460.1| sun homolog protein [Aromatoleum aromaticum EbN1]
          Length = 427

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 100/461 (21%), Positives = 167/461 (36%), Gaps = 60/461 (13%)

Query: 1   MKSG--MNARLV---SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M       +R +   ++ +L  V+        +L   + ++    +  RD+  +   V  
Sbjct: 1   MSKHDEAASRSLLIHAARVLGMVLTFEHPADVVLSRYFRENR--EIGHRDRGFIAEAVYG 58

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R L  +  ++               + LL                            +
Sbjct: 59  IVRRLRWLRRLVGE---------DVRPRTLLL--AWLARGEGWP--------------MR 93

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
                A           + +       A  + +P+W  ERL   +G+  VL ++ +   P
Sbjct: 94  HFEGLASATERDWISGIKARELDEGSFAERADLPDWLAERLLATHGEAEVLELAHSLNRP 153

Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQ 226
             +DL V     D      KL    +                  ++   P F EG + VQ
Sbjct: 154 APLDLRVNVLKADRGEVLEKLKFAGIEAKPCPFSPHGIRLGAKPALQKHPLFLEGAFEVQ 213

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283
           D  + +   L        V+D CA  GGKT Q   ++ S  ++ A DVS++RL KL+  +
Sbjct: 214 DEGSQLLGFLVQPKRGELVVDFCAGAGGKTLQLGAMMRSTGRLYAFDVSEKRLAKLKPRV 273

Query: 284 DRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            R  L          E DA         D V VDAPCS  GT+RR+PD+ W +  + + +
Sbjct: 274 ARAGLSNVHPVLIAHERDAKVKRLAGKADRVFVDAPCSGLGTLRRNPDLKWRQTPESVAE 333

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L      VKP G +V++ CSL  ++++ VV   L + P   E+        +
Sbjct: 334 MVAKQGAILESAARLVKPAGRLVYATCSLLVEENDAVVDAFLAAHPEFREIDATEVLKKQ 393

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            I +         +R++P             DGFFA  L R
Sbjct: 394 GIALDTGAR----LRLSP--------RKHDTDGFFAAVLER 422


>gi|325478752|gb|EGC81863.1| putative ribosomal RNA small subunit methyltransferase B
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 426

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 193/455 (42%), Gaps = 55/455 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  + LS ++ K       ++    D A  L        +  ++   L     +D ++D
Sbjct: 5   ELIFNSLSNIIYKDKKSNDEIN-YLSDKASNL------SYITKVIYGVLENKIYLDYMID 57

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +    L +   ++  +L + +  I +L+  DYA VD  V+  K+  +N+  A  VN+IL
Sbjct: 58  KLSKVKLRKIHKNVLLILEIGIYNIHFLETKDYATVDKLVDLTKK--KNKRSAGFVNAIL 115

Query: 129 RRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           R   R + E+ +          +    +P    + + + YG +              + +
Sbjct: 116 RNFIRNEKEISKIKISDDLKSLSVRYSMPYDITKYIFDNYGMDYTKEFLRYANKESKLSI 175

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASAS 231
            V     ++++    L ++        +       + P  +VS   F  G++ +Q  ++ 
Sbjct: 176 RVNTTKINVKSLKKDLESIGYTVKDSNISKNALIVDNPNGLVSTDLFKNGLFTIQQEASM 235

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
             V++    +N ++LD+CAAPG KT        +  K+ A D+S  +L+ +  N++RL L
Sbjct: 236 KTVEVLNPRHNSNILDICAAPGTKTTYIAEYTENTGKILANDISFNKLDLIMENINRLGL 295

Query: 289 YAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
              ++   DA  Y  +    FD +LVDAPCS  G + R P++ + R  +DI K A  QR+
Sbjct: 296 RNIELTNFDARVYKDEYKEKFDYILVDAPCSGLGVMARKPEIRYNRSLEDIKKLAKLQRE 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +++  I ++K GG++++S C++   ++ E    +   +   +E++P++            
Sbjct: 356 IIINAIKYLKVGGVLIYSTCTIGNIENRENFDYI--KNMETMEVIPIDGK---------- 403

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                          +        DGFF    ++ 
Sbjct: 404 ------------DYIEFVSFKENTDGFFISKFKKK 426


>gi|313667408|ref|YP_004047692.1| SUN-family protein [Neisseria lactamica ST-640]
 gi|313004870|emb|CBN86296.1| SUN-family protein [Neisseria lactamica 020-06]
          Length = 419

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHI--RAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|223984315|ref|ZP_03634458.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM
           12042]
 gi|223963715|gb|EEF68084.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM
           12042]
          Length = 412

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 103/450 (22%), Positives = 182/450 (40%), Gaps = 59/450 (13%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +   L+ ++ +       L         + LS+ ++  V A++   LR    +   
Sbjct: 4   TRKRAWQGLNAILNEGQYANLWLRQH-----GQTLSEEEKRWVTAVIYGVLRHREPLRWQ 58

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125
              ++ +       S+  LL +SV Q+ YLD  A+YA+V+ AVE   R K+      LVN
Sbjct: 59  WRDLVRNVPE---PSVAVLLDMSVYQLFYLDKGAEYAIVNDAVELCPRSKK-----GLVN 110

Query: 126 SILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           ++LR++ R   + L +       A ++  P+W  +  +  YG+E++  I+ A +    + 
Sbjct: 111 AVLRQLLRRGPKPLPKPESIADLALVTSHPQWLLQLWKAHYGEEKMRRIALADLEEAAVS 170

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           + +       E  A + +  +   G         + VS P   EG   +QD S+     +
Sbjct: 171 VRINPLKLSREALAQRPDWALESNGWTI--RTAGNPVSDPWLKEGKIVIQDRSSQQVALM 228

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                N +V D C+APG KT Q   ++ +   + A D+   RL  +     R        
Sbjct: 229 LDPKPNDTVFDACSAPGTKTTQLAAMMNNEGSILACDLHAHRLALVEEAAQRCGATIIQT 288

Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             +DA         + FD VL+D PCS  G +R  P++L     D + +    Q  +L  
Sbjct: 289 RTLDAAQADQQLAGRQFDRVLLDVPCSGLGVLRHKPEILLRLTPDSLDEIVALQAAILSH 348

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
                KPGG +V+S C+L+++++++ V   L   P   EL+                   
Sbjct: 349 CAPLCKPGGTLVYSTCTLNRKENDKQVAAFLLQHP-EFELMAE----------------- 390

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     + I       DGF+   + R
Sbjct: 391 ----------QTIFPDEGAQDGFYIAKMTR 410


>gi|218767200|ref|YP_002341712.1| SUN homolog [Neisseria meningitidis Z2491]
 gi|121051208|emb|CAM07479.1| SUN homolog [Neisseria meningitidis Z2491]
 gi|319411405|emb|CBY91816.1| ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
           methyltransferase) [Neisseria meningitidis WUE 2594]
          Length = 419

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 197/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FD +L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDTILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|285019616|ref|YP_003377327.1| tRNA and rRNA cytosine-c5-methylase [Xanthomonas albilineans GPE
           PC73]
 gi|283474834|emb|CBA17333.1| putative trna and rrna cytosine-c5-methylase protein [Xanthomonas
           albilineans]
          Length = 437

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 189/438 (43%), Gaps = 41/438 (9%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
            +  SL   L              RD+ LV AI    LR  P  +A L   L   LP++ 
Sbjct: 26  DRGRSLKAELAAALPGLP----DARDRALVEAICFAVLRRRPAYEAALRLWLQKQLPQRD 81

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             L+ LL    AQ+  L +A +A +   VE  +  +  R  A LVN++LRR  R+ +  +
Sbjct: 82  AELRALLLAGFAQLDVLGLAPHAALSATVEATRALERPRQ-AGLVNALLRRALRDGLPEV 140

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199
              AG    P W ++ +   +  E+  AI  A   P  + L V     T A  L A+   
Sbjct: 141 PADAGW---PLWLRDAVCADWP-EQAEAIFAASQQPAPLWLRVNRQRGTRATYLQALADA 196

Query: 200 TGGIR---------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
               +            +P ++ +LPGFAEG   VQDASA     +        VLD CA
Sbjct: 197 GIAAQAASALADAVCLHVPMAVSALPGFAEGWVSVQDASAQQVADVLAPAPGARVLDACA 256

Query: 251 APGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH----LYAEDIIEMDAFDYCPK 304
           APGGK+A          +TALDV  RRL+++R   +R+        +         +   
Sbjct: 257 APGGKSAHLLERDPTLCLTALDVDARRLQRVRETFERIGSGTQARLQVADAAQPQTWWDG 316

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             FDAVL+DAPCS+TG +RR PDVL  R  +D++     Q +LL  G   ++PGG++V++
Sbjct: 317 VPFDAVLLDAPCSATGIVRRQPDVLLHRRGEDLIALQALQARLLDAGWQVLRPGGVLVYA 376

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CSL + ++   +Q +L          P  +    S          G  +  P       
Sbjct: 377 TCSLLQDENARQLQALLARHADAALEDPGAACGHPSG---------GGRQRLPGEQHA-- 425

Query: 425 GVSSGMDGFFAVALRRLI 442
                 DGFF   LR+  
Sbjct: 426 ------DGFFYARLRKTA 437


>gi|300692914|ref|YP_003753909.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Ralstonia
           solanacearum PSI07]
 gi|299079974|emb|CBJ52651.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Ralstonia
           solanacearum PSI07]
          Length = 441

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 101/438 (23%), Positives = 166/438 (37%), Gaps = 36/438 (8%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           +R+ ++L   +D               +   + +     R+L   D ++  ++       
Sbjct: 22  LRQGMTLPQAIDAAC-----AGQPGATRGAAQDLAYRATRWLGSADWLIRTLIPRPPAEG 76

Query: 79  KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                 LLRV++AQ+L        + VVD AV  A  D +  H   ++N +LRR  RE+ 
Sbjct: 77  AA---NLLRVALAQLLDTPPPYAPFTVVDQAVRAASADPKLAHAKGMINGVLRRFLREQG 133

Query: 137 ELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186
           +L+  +          P W+   + + Y +     ++     P  +       + V   +
Sbjct: 134 DLVAAMQADPVAAINYPAWWIGAVRDAYPEAWQAILAAGNRRPPMVLRVNPRRVPVDAYL 193

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
              A          G          +  LPGF EG   VQDA A +   L        VL
Sbjct: 194 ARLAEAGIEAERIGGQAVRLARAMPVGDLPGFVEGDVSVQDAGAQLAAPLLDVAPGQRVL 253

Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302
           D CAAPGGKT     +  G +V AL+    R E++  NL RL   A            + 
Sbjct: 254 DACAAPGGKTGHLLELADGLEVVALESDAERAERIGENLARLGQTATVCVGDAAKPDAWW 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +L D PCS+ G +RRHPD+ W R   D+   A  QR ++    + +KPGG +V
Sbjct: 314 DGRSFDRILADVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGKLV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CS+   + E   +         + L           +     +P             
Sbjct: 374 YVTCSIFPTEGEAQARWFESRLQDAIRLDGPGQLLPAMSEATGGFAP------------G 421

Query: 423 IDGVSSGMDGFFAVALRR 440
           +  +    DGF+    ++
Sbjct: 422 VSSLPLDHDGFYYAVFQK 439


>gi|327400017|ref|YP_004340856.1| Fmu (Sun) domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327315525|gb|AEA46141.1| Fmu (Sun) domain protein [Archaeoglobus veneficus SNP6]
          Length = 440

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 109/452 (24%), Positives = 184/452 (40%), Gaps = 36/452 (7%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            ++  +L  +  + IS    L        F     + +  + A V  TL+    ID ++D
Sbjct: 6   EIAVEILERIDEEIISAKEALKAGLAGKDFDY---KVRGSIHAYVMETLKRRNTIDFLID 62

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV--- 124
             L   ++   K  L+ LLRV+V ++ Y  V      D AV  AKR    R  A +    
Sbjct: 63  RSLDGKTVYELKPFLRNLLRVAVYEMFYKGVHPALATDSAVRIAKRRIGGRAAALVNAVM 122

Query: 125 ---NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL--AISDACISPLYID 179
                I       ++  +QR+A     PEW+ E      G+E+ +   I++   +     
Sbjct: 123 RRAEKIDLNSETSRLPEVQRLAYRYFHPEWYVEYAIKLLGREQAIELMIANMQNTTYVRV 182

Query: 180 LTVKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
             +K  IE+    L               ++        +L   A+G + VQD ++++  
Sbjct: 183 NELKASIESVRKYLERYCVIEETCLPEVFKVVAWDRHPSTLEWHADGKYVVQDLASTLVA 242

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                     VLDL AAPG KT+ +   + +  K+ A+D S+ R+ +++  + +L +   
Sbjct: 243 HAMKPEPGERVLDLAAAPGLKTSHIAMLMENRGKIMAVDNSEERVRRMKAKMKKLGVEIV 302

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +    D   +      D VL+D PCS+TG  R +P V W  D      +   QR++L   
Sbjct: 303 ECRVADGVKFRW--KADRVLLDPPCSTTGAFRNYPCVKWRYDEYKYRATVKLQRRMLENA 360

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-- 409
              V  GG+VV+S CS+   ++EE V      SP  V+ V ++       +      P  
Sbjct: 361 YRNVGEGGVVVYSTCSITFDENEENVMA----SPFKVDDVKIDGFSSGISEFEGKRFPEW 416

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           E  +R  P + +          GFF   L R+
Sbjct: 417 EKVLRTWPHLHDCC--------GFFISRLLRV 440


>gi|260903811|ref|ZP_05912133.1| Fmu (Sun) domain protein [Brevibacterium linens BL2]
          Length = 492

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 162/460 (35%), Gaps = 44/460 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R ++  +L  V  K      LL  +   +    +  +D      +    LR     DA+
Sbjct: 49  PRRIAWEVLVDVETKDSYANLLLPAKLARTH---MEPQDAAFTTELTYGALRQQEFYDAI 105

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       +          +R+   QIL + V D+A +   V   K +      A  VN+
Sbjct: 106 IARAANRPIDSIDAEPLAGMRLGAHQILSMRVPDHAALSETVAVIKTN--APKTAGFVNA 163

Query: 127 ILRRVSREKIELLQR-----------IAGISIIPEWFKERLENFYGKE-----RVLAISD 170
           +LRR+S        R            A     PEW    +             + A+ +
Sbjct: 164 VLRRISEVDRAEWLRRVTDGATAVGEQAIEYSHPEWIVRAMTQALKGHGRQASELQALLE 223

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           A  +   + ++    +   +  L         I +        ++   A G   VQD  +
Sbjct: 224 ADNAAAKVSVSALPGLVDRSE-LPGAPTEFSPIGVTLETAVPKNVDAVATGRARVQDEGS 282

Query: 231 SIPVQLFGT--LNNLSVLDLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLD 284
           ++             +  DLCA PGGK A         G  + A D S+ R+E +R +  
Sbjct: 283 ALVALALAQVEAPAGNWADLCAGPGGKAAVLAAIAKQQGGALDAFDSSEHRVELVRSSTQ 342

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
              L        DA        +  VLVD PCS  G +RR P+  + R  +DI   A  Q
Sbjct: 343 --ALDNVTTRVQDAR--DATGPYAKVLVDVPCSGLGALRRRPEARYRRRPEDINALAGLQ 398

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL   +    PGG+V +S CS    ++  VV  VLR + + +   P   A     D  
Sbjct: 399 RELLRAALDACAPGGVVAYSTCSPHYAETVLVVDDVLRKTDVEILDAPAVLAEVTGTDAE 458

Query: 405 MALS----PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              S       + ++ P +           DG F   +R+
Sbjct: 459 GFASVTRGAGRYAQLWPHV--------HNTDGMFLALMRK 490


>gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
 gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
          Length = 472

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 177/419 (42%), Gaps = 39/419 (9%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAV 103
           D+ L+ +I   T++ +  +D V   +     +      L+  LR++V  +L+    D   
Sbjct: 68  DR-LLTSIFYDTMKRMGLLDRVAAELANVPTVLILDPWLRAALRLAVDIVLFHR-PDKNT 125

Query: 104 VDLAVEQ------AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLE 157
           +            AK       F       L     +   + + +    ++P W   R+ 
Sbjct: 126 LHRLRWIVADFISAKTHPYVGMFYWQTFDKLLEYRPKPKTVEEALEWKYLLPAWLIRRMR 185

Query: 158 NFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217
           +  G+E    + +A      I + V     T    +  +        +      IV   G
Sbjct: 186 SLLGEEESEKLFEALNKRPLISIRVNTLKTTVEEVVEELKREGKNPIVSTRVPVIVKFEG 245

Query: 218 ---------FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265
                    + EG + +Q+ +++    +      ++V+DL AAPGGKT+ +   + +  +
Sbjct: 246 PYDFDRSRLYREGKFVIQEEASAAASIILDPKPGMTVVDLAAAPGGKTSHIAELMKNHGR 305

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTI 322
           + A D+ + R++++R  L R+ +    I E DA +      +++ D VL+DAPC+STGTI
Sbjct: 306 IYAFDIDRVRIKRMRMILRRMGITIVRIFEKDAREAPRILGEEIADRVLLDAPCTSTGTI 365

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            ++P++ W    + + +    QR++L      VKPGG ++++ CSL  +++E+ ++  L+
Sbjct: 366 AKNPELRWRVREEGLEEIVKLQREMLEAAAKLVKPGGRLLYTTCSLLPEENEDNIKWFLK 425

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 +LVPLN  Y  S  +       G +R  P              GFF   L + 
Sbjct: 426 RH-SEFKLVPLNGPYDPSPLL------HGTMRAWPH--------RHDTIGFFYALLEKK 469


>gi|154244891|ref|YP_001415849.1| Fmu (Sun) domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158976|gb|ABS66192.1| Fmu (Sun) domain protein [Xanthobacter autotrophicus Py2]
          Length = 478

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 107/472 (22%), Positives = 163/472 (34%), Gaps = 53/472 (11%)

Query: 6   NARLVS-SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            ARL +   L+  V         ++   +   A R +  RD+  +  ++   LR   RI 
Sbjct: 16  AARLQATLELMHEVDSVARPADAVVSAWFR--ARRQIGDRDRGQIYDLLYALLRHHARIV 73

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQ------------------ILYLDVADYAVVDL 106
             L       +PR +      L    A                         +     D 
Sbjct: 74  WWLAKHGRPDVPRNRLLAWLALDGGTALGGKTSGNKTSGNKTSGNKTSGNKTSGSKTPDQ 133

Query: 107 AVEQ-AKRDKENRHFAKLVNSILRRVSREKIELL-QRIAGISIIPEWFKERLENFYGKER 164
                +              ++L ++    I+            P W  E L   +  + 
Sbjct: 134 IHGLFSGGKFAPAVLTDHERALLLKLQGCTIDHPAMPDEVRFECPSWAVEPLRRRFD-DT 192

Query: 165 VLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESI------VSL 215
                 A ++P  +DL V       E     L  + L     RL      +       SL
Sbjct: 193 FEREMAALLTPPPLDLRVNPVKSTREAMLRALRDLGLKAEPSRLAPFGIRVKERPSLASL 252

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVS 272
           P    G   +QD  + +   L        V+D CA  GGK    A  + +   V A DVS
Sbjct: 253 PMLKSGEVEIQDEGSQLVAMLVDARPGERVVDFCAGAGGKTLAIAAQMANKGHVIACDVS 312

Query: 273 KRRLEKLRCNLDRLHLYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
             RL++      R  L+  +      E D +    K  FD VLVDAPCS TGT RR+PD 
Sbjct: 313 DGRLKRAAERFRRAGLHNIETRPLASETDRWVKRHKGGFDRVLVDAPCSGTGTWRRNPDA 372

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            W +    +      Q ++L      VKPGG +V++ CS+  +++E  V   L + P   
Sbjct: 373 RWRQQEAGLDHLLPLQARILASAARLVKPGGRLVYATCSMLPEENEAQVAAFLAAYP-AF 431

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++P+  A  +    A            PD L  +       DGFFA  L+R
Sbjct: 432 HVMPVREAAPQLTGSA-----------HPDHL-SLTPARHETDGFFAAVLQR 471


>gi|332283972|ref|YP_004415883.1| hypothetical protein PT7_0719 [Pusillimonas sp. T7-7]
 gi|330427925|gb|AEC19259.1| hypothetical protein PT7_0719 [Pusillimonas sp. T7-7]
          Length = 474

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/461 (22%), Positives = 172/461 (37%), Gaps = 64/461 (13%)

Query: 6   NAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            AR      +L  +++        L   +       L  RD+  V   V   LR L R  
Sbjct: 36  AARIEQVRSVLGEILQWEYPADAALSHWFRVHP--KLGARDRGEVAEAVFDVLRHLRRY- 92

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
                   S       + ++L  + +A      V D +V++  + + ++           
Sbjct: 93  ---RQFSESG---TGPAARRLAILGLA-----SVFDKSVLNTGLSEIEQQWL-------- 133

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                   +         A    +P+W  ERL +    +    +  A   P  +D+ V  
Sbjct: 134 -----AHVQGISIESLSRAVRDSLPDWLDERLASL---DNADDLVRALNQPAPLDIRVNP 185

Query: 185 ---DIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASASI 232
              D      ++ A                    +    +   P F +G   VQD  + I
Sbjct: 186 LKADRADMLKQMRAGAGLRYDPEPTPYSPWGIRLQGRPPVNRWPMFEKGEIEVQDEGSQI 245

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
            V L G      ++D CA  GGKT     L+ S  ++ A DVS  RL + +    R  L 
Sbjct: 246 LVALVGPKRGEMIIDYCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLS 305

Query: 290 AEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
               +    E D      +     VL+DAPCS  GT+RR+PD+ W +  + +      Q 
Sbjct: 306 NIVPVVINAENDQRVKRLRGKAQRVLIDAPCSGLGTLRRNPDLKWRQHPESLQALCDTQA 365

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L Q    V PGG +V++ CS+  +++EE +++ L  +P  + L     A     D   
Sbjct: 366 SILRQASRCVAPGGRLVYATCSILPEENEEQIERFLAENPDFIVLDACKIA----ADRCE 421

Query: 406 ALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVAL-RRLIQP 444
            L+ EG ++R+ PD+           DGFFA  L R+   P
Sbjct: 422 NLTLEGPFLRLRPDI--------HQTDGFFAAVLERKKETP 454


>gi|313680062|ref|YP_004057801.1| nusb/rsmb/tim44 [Oceanithermus profundus DSM 14977]
 gi|313152777|gb|ADR36628.1| NusB/RsmB/TIM44 [Oceanithermus profundus DSM 14977]
          Length = 410

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/441 (24%), Positives = 174/441 (39%), Gaps = 34/441 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  + R ++  +L  V  +       LDL    +    L  +   L   +V  TLR L
Sbjct: 1   MHALDDPRALALGVLVKV-GRGRFAAPTLDLALSRT---ELDPQAAGLATDLVYGTLRRL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             ID  L+ +L     R   +++  LR    + L+     +A V+  VE   R   +   
Sbjct: 57  RWIDWSLEPLLEHP-GRLPEAVRWALRAGGYEKLFTPRPAHASVNAWVEVVGR--RHPRL 113

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             LVN++LRR+           A    +P++  E     +G        +    P  + L
Sbjct: 114 RGLVNAVLRRLETRPAPE----AVRLGLPDFLYEEWRTRFGDPEW---MEELNEPAPLWL 166

Query: 181 TVKFDIET-WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           T+    E   A +            ++    S+  +  F +G+   Q+ ++ +  QL   
Sbjct: 167 TLFPGGEAALAEQGVPFEPGPVPGNVRVQGFSVRRIVAFRKGLAQPQNPASLLAAQLLEA 226

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
                VLDL      K A L   GA+VT++D   RR E  R NL RL L           
Sbjct: 227 RAGERVLDLAGGSALKAAWLAARGARVTSVDADARRQEAGRRNLARLGLQ--VTFRTHDL 284

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                     VL+DAPC  TGT+R HP++ +  + + + + A  Q +LL       +PGG
Sbjct: 285 TRPLDLTAPKVLLDAPCLGTGTLRGHPELRFRLEPEALARMARLQAQLLETAARATEPGG 344

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           ++V++ CSL + + E  V + L   P    L   +     +    + + PE         
Sbjct: 345 LLVYAVCSLTEAEGEGQVARFLAEHPEFEPLEIDSPVPLLARGHGVYVRPE--------- 395

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
                   +G+DGF+   LRR
Sbjct: 396 --------NGLDGFYYARLRR 408


>gi|325266376|ref|ZP_08133054.1| RsmB/NOP family methyltransferase [Kingella denitrificans ATCC
           33394]
 gi|324982169|gb|EGC17803.1| RsmB/NOP family methyltransferase [Kingella denitrificans ATCC
           33394]
          Length = 431

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 176/449 (39%), Gaps = 61/449 (13%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   +       L ++D+  +       LR   +I AVL    
Sbjct: 22  AQVLADMLTFKQPADAVLSDYFRQHR--KLGRQDRHEIAETAFAALRHYQKIAAVL---- 75

Query: 72  ISSLPRKKYSLQQLLRVS----VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                + + +    L +     ++Q+ +L                         +     
Sbjct: 76  RRPYAQPEKAALAALVLGRGTNLSQLAHL-----------------------ADEETMEF 112

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
           + R+   K E    +   + +PEW  ERL+  +  E+VLA   + + P  +D  V     
Sbjct: 113 MSRLKARKTEWQSSLHTAAELPEWLVERLQAHWTDEQVLAFGRSVMQPAPLDTRVNTLKG 172

Query: 185 DIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             +    +L A                     ++   P F +G   VQD  + +  QL  
Sbjct: 173 RRDKVLAELQAEFPHAAATPYAPHGIRFRDKPALNKHPLFLDGTLEVQDEGSQLLAQLVQ 232

Query: 239 TLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII- 294
                 V+D CA  GGK       + +  ++ A D++++RL  L+  + R  L       
Sbjct: 233 AKRGEIVVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPEK 292

Query: 295 ---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
              E D          D VLVDAPCS  GT+RR+PD+ + +  + I +    QR +L   
Sbjct: 293 IGSEHDPRVTRLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSPESIAQLVRQQRSILQAA 352

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
            + V PGG +V++ CS+  +++E  V++ LR +P    L    +A        +AL    
Sbjct: 353 SALVAPGGRLVYATCSVLPEENERQVEEFLRGNPQFSLL----NAGEILAAQKIALDTGK 408

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++++        D  +   DGFFA  L+R
Sbjct: 409 YLQL--------DSAAHQTDGFFAAVLQR 429


>gi|254672816|emb|CBA06959.1| Sun protein [Neisseria meningitidis alpha275]
          Length = 419

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 197/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L  ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLMAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|329946677|ref|ZP_08294089.1| putative ribosomal RNA small subunit methyltransferase B
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526488|gb|EGF53501.1| putative ribosomal RNA small subunit methyltransferase B
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 463

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 102/472 (21%), Positives = 178/472 (37%), Gaps = 54/472 (11%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   L+ V R       LL           L +RD     A+   TLR   R DA++   
Sbjct: 2   ALEALTRVRRDDAFANLLLPELLDS---ADLDRRDAGFTTALTYGTLRLQGRYDAMISSC 58

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              +L R   ++  +LR+   Q++ + VA +A V   V+ A      R  A  VN+I+RR
Sbjct: 59  TDRTLERIDPTVLDVLRLGCHQLMGMRVAQHAAVSTTVDLAADSCG-RGAATFVNAIMRR 117

Query: 131 VSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAISDACI 173
           +S + ++                 A     P+W  + L           + + A+  A  
Sbjct: 118 LSGQDLDAWMNDLRQSAPDETVALARTQSHPQWIVKALRQALTTHGRSADELEALLVADN 177

Query: 174 SPLYIDLTVKF------------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
           +   + L  +                   H +   +     + +  +      +    + 
Sbjct: 178 TDPEVALCARPGLIAPEALAKIARKADRVHDVEPRLGRISPLAVVMVGGDPGRIEAIRDS 237

Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSK 273
              V+D  +     I  +      +   LDLCA PGGK     A+    GA + A ++S 
Sbjct: 238 RAGVEDEGSQLVALIAAEAPLEGRDERWLDLCAGPGGKAALLAARAGQKGAHLLANEISP 297

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
            R + +R  L  +      +   D  D        +D VLVDAPC+  G++RR P+  W 
Sbjct: 298 HRADLVRSALRAVPQDTVHVRCGDGRDVGRDEPDCYDRVLVDAPCTGLGSLRRRPEARWR 357

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSSPIPV 388
           R  +D+   A  QR+LL   +  V+ GG+V +  CS    ++  VV+   ++L+   +  
Sbjct: 358 RRHEDVAVLAELQRELLTSALHAVRRGGVVTYVTCSPHALETSLVVRDVTRLLKRQGLSA 417

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           E++       +      A +    +++ P +         G D  F   LRR
Sbjct: 418 EILHAGDVATRLAPQPPAGADREMLQLWPHL--------DGTDAMFCALLRR 461


>gi|229820540|ref|YP_002882066.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566453|gb|ACQ80304.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333]
          Length = 480

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 161/463 (34%), Gaps = 47/463 (10%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             +L  V R       +L     +   R LS RD      +   TLR   R DA+L    
Sbjct: 29  FDVLRAVERDDAYANLVLPALLAE---RGLSGRDAAFATELAYGTLRMRGRYDAILAIAS 85

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                     L  +LR+   Q+L + VA +A V   V  A+        +   N++LR +
Sbjct: 86  TRPPQELDPPLLDVLRLGAHQLLGMRVAAHAAVSETVTLAREVVG-AGASSYANAVLRAI 144

Query: 132 SREKIELLQRI------------AGISIIPEWFKERLENF----------YGKERVLAIS 169
            R + E   R                   PEW                     E +LA+ 
Sbjct: 145 GRAEPEEWDRRLAERTTDPTALLTRRLSHPEWVVRAFREALALDDGAVVGDAGEELLALL 204

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +A  +   + L  +  +        A                  S+     G   VQD  
Sbjct: 205 EADNAAPAVTLVARPGLAGIRDLPGATPARWARTAAVLGAGDPASIEAVRTGRAAVQDEG 264

Query: 230 AS----IPVQLFGTLNNLSVLDLCAAPGGKTA------QLIVSGAKVTALDVSKRRLEKL 279
           +               + + LDLCA PGGKTA           G ++ A +V   R + +
Sbjct: 265 SQLVALALAAAPVDGPDDAWLDLCAGPGGKTALLSSLLAERGEGGRLLAAEVVPHRADLV 324

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           R  +  L     ++  +D  +   ++   FD VLVDAPC+  G +RR P+  W R   D+
Sbjct: 325 RRAVRALPPGLVEVRALDGRELGTERPGAFDRVLVDAPCTGLGALRRRPEARWRRSPADL 384

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 QR LL   +  V+PGG+V +  CS    ++  V    +      +EL+   +  
Sbjct: 385 ASLGPLQRDLLTSAVGAVRPGGVVAYVTCSPHLAETRVV-VDDVMRRVGGLELLDAAAVL 443

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +M L    + ++ P           G D  F   LRR
Sbjct: 444 DGVSQESMHLGAGPYAQLWPH--------RHGTDAMFLALLRR 478


>gi|296137329|ref|YP_003644571.1| sun protein [Thiomonas intermedia K12]
 gi|295797451|gb|ADG32241.1| sun protein [Thiomonas intermedia K12]
          Length = 457

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 175/452 (38%), Gaps = 41/452 (9%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+  V +   SL+  L        +       +   +A+    LR L  + A+L  
Sbjct: 24  ACAQLIGAV-QAGASLSTALPQAATRGKW---DASQRGAAQALSFAVLRHLGTVRALLTD 79

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADY----AVVDLAVEQAKRDKENRHFAKLVN 125
           +    +      L+ +L+ ++A +L  D   +     VV+ AVE  KR    RH     N
Sbjct: 80  LQPKPIH--PPLLRDVLQTALALLL-PDAPAHYAAHTVVNQAVEACKRTPSLRHAQGFAN 136

Query: 126 SILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP-LYIDL 180
           ++LRR      +     ++ +      P+W+ + L++ Y  +    +  A   P + + +
Sbjct: 137 ALLRRFVSRTADIEAVRMRTLEARWNHPDWWVQALQSAYPADWQGVLEVAQRQPAMTLRV 196

Query: 181 TVK-FDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
             +      +   L A  LP             + +   ++  LPGF  G   VQDA+A 
Sbjct: 197 NPRLQSRTAYQAALAACGLPCTAPDDPLLDQALILKQAVAVERLPGFERGWVSVQDAAAQ 256

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
               L        VLD CAAPGGKTA L       + ALD   +RL ++   LDRL L A
Sbjct: 257 YAAALLDVQPGQRVLDACAAPGGKTAHLLERCDCDLLALDKDAQRLRRVEDTLDRLGLQA 316

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS++G  RRHPD+ W R   DI   A  Q  LL
Sbjct: 317 RTLAADAAHPATWWDGQPFDRILLDAPCSASGIARRHPDIRWLRRAADIPALAATQAVLL 376

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 ++PGG +++  CS+  Q+  E  +  L      +          +         
Sbjct: 377 DALWPLLRPGGKLLYVTCSVFPQEGVEQARAFLARHADAIASPAPGQLLPQEPAFDQTRD 436

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G  R                DGFF     +
Sbjct: 437 DPGAAR-------------HSQDGFFYALFTK 455


>gi|240129165|ref|ZP_04741826.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 417

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 4   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 61  LAQMLKKLID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 118 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 177 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 356

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 357 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416


>gi|268687548|ref|ZP_06154410.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268627832|gb|EEZ60232.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 419

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKLID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291
           L    +   +LD CAAPGGKT  ++  +  +VTALD+   RL+++  N+ RL      A 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D   +   K FDA+L D PC+++G  RR+PDV W R   D +K+A  Q  LL   
Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG ++ + CS+  ++++  +QK L          P+ S                
Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418


>gi|77166463|ref|YP_344988.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrosococcus oceani
           ATCC 19707]
 gi|76884777|gb|ABA59458.1| 16S rRNA m(5)C-967 methyltransferase [Nitrosococcus oceani ATCC
           19707]
          Length = 403

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/420 (25%), Positives = 185/420 (44%), Gaps = 35/420 (8%)

Query: 38  FRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD 97
              L  RDQ   + +    LR+LPR+D +   +L   L  +   L  LL + + Q+  L 
Sbjct: 1   MAHLPARDQAFTQTLCYGVLRWLPRLDYLAQKILHKPLRARDRDLYALLLLGLYQLTELG 60

Query: 98  VADYAVVDLAVEQAK---RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
           +  +A +   V  A+   +    +     + + LR  +  + ++       +  P+W  +
Sbjct: 61  IPSHAALSETVNAAESLGKPWAKKMLNATLRAYLRNETALQTQVTAHETAHTAHPQWLLD 120

Query: 155 RLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAV------MLPTGGIRL 205
            + N +  +    I  A  S   + L +   + + + +  +L         +  T    +
Sbjct: 121 AIRNSWP-DHWPQIITANNSHPPLSLRINRLQNNRKNYLQELKRNDIKAWPIPHTESGVI 179

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK 265
            E P  + +LPGF +G   VQD +      L        VLD CAAPGGKT+ ++    +
Sbjct: 180 LEQPCQVATLPGFLKGQVSVQDGAGQRAAPLLALTPGQRVLDACAAPGGKTSHILELEPQ 239

Query: 266 V---TALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTG 320
           +    ALD+   RLE+L  NL RL L AE I    +    +     FD +L+DAPCS +G
Sbjct: 240 LETLIALDLDATRLERLNSNLKRLQLKAEVIQGNALQPDTWWDGIPFDRILLDAPCSGSG 299

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            IRRHPD+   R   DI+  A  Q++LL      + PGG++++  CS+   ++E+ +++ 
Sbjct: 300 VIRRHPDIKALRRESDILPLATLQKRLLSALWPLLAPGGMLLYCTCSILPIENEQQIREF 359

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L + P   E         + +D+   L      ++   M E        +DGF+   L +
Sbjct: 360 LLTHPDGQE---------RPLDVPWGLLQTAGRQLLTGMEE--------LDGFYYACLEK 402


>gi|15677216|ref|NP_274369.1| SUN-family protein [Neisseria meningitidis MC58]
 gi|7226595|gb|AAF41725.1| putative fmu and fmv protein [Neisseria meningitidis MC58]
 gi|316984157|gb|EFV63135.1| NOL1/NOP2/sun family protein [Neisseria meningitidis H44/76]
 gi|325134414|gb|EGC57059.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M13399]
 gi|325140430|gb|EGC62951.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis CU385]
 gi|325144514|gb|EGC66813.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240013]
 gi|325200029|gb|ADY95484.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis H44/76]
 gi|325205882|gb|ADZ01335.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M04-240196]
          Length = 418

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 166/446 (37%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L  +D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPADAVLSAYFREHK--KLGSQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +   + L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETAFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +   P  +D+ V       + 
Sbjct: 105 KARKTEFSDSLNTAAELPQWLVEQLKQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            DA         D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDARIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCAEL-LAGLKIDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 401 --------NSARHQTDGFFAAVLQRK 418


>gi|303233972|ref|ZP_07320621.1| putative ribosomal RNA small subunit methyltransferase B
           [Finegoldia magna BVS033A4]
 gi|302494897|gb|EFL54654.1| putative ribosomal RNA small subunit methyltransferase B
           [Finegoldia magna BVS033A4]
          Length = 423

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 175/424 (41%), Gaps = 36/424 (8%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89
                   +  L +RD   ++  V   +     ID V+       + R    + ++LR++
Sbjct: 22  SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFIDYVISKCSDLEINRLDKIVLEILRMA 81

Query: 90  VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-RIAGISII 148
             +IL++  ADYAVVD AVE A        +   VN++LR V R  ++           I
Sbjct: 82  TTEILFMKTADYAVVDEAVELASSITR---YKDYVNAVLREVCRINVDSEDLEDDIKFSI 138

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA-------VMLPTG 201
            +   + L   Y K+ V  +  +        +      E                     
Sbjct: 139 NKDLLKMLNKSYSKKTVRKLLKSFFYKSDFVIKQNKLKENNLKINLENQGFALNDHPFLK 198

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
              + E PESI+    F EG + +QD S S+  ++   L N  +LD+CAAPG K+  +  
Sbjct: 199 DSFIVENPESIIDTKEFKEGKFLIQDGSCSLCAEILEPLENSIILDICAAPGSKSCNIQE 258

Query: 262 SGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPC 316
                      D+++ ++ +++ N+++  +     +  DA          FD +LVDAPC
Sbjct: 259 ITNNQSIIYCNDINQNKIARIKENVEKCAVKNVQYMNFDATILQKDLINKFDRILVDAPC 318

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S+TG I ++P++   R   D+      QR++L     ++K GGI+V+S CSL K+++EE 
Sbjct: 319 SATGVINKNPEIKLFRTKKDVENLVNTQRQILENCEKYLKEGGILVYSTCSLLKEENEEN 378

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           V+  + +             + K  D+        +I++ P           G  GFF  
Sbjct: 379 VE-FIENR-----------LHLKRKDIEFYGDKNEFIKLMP--------FQKGTQGFFIS 418

Query: 437 ALRR 440
              +
Sbjct: 419 KFVK 422


>gi|108761514|ref|YP_630797.1| RsmB/NOP family methyltransferase [Myxococcus xanthus DK 1622]
 gi|108465394|gb|ABF90579.1| methyltransferase, RsmB/NOP family [Myxococcus xanthus DK 1622]
          Length = 472

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 174/450 (38%), Gaps = 40/450 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
                    V  +       LD      A   L   ++  V   V   LR    +D +L 
Sbjct: 43  QACLEAYGSVRHEGRMADRALDFTLRRKA--NLYSNERRAVAERVYGLLRRQRTVDFLLS 100

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                     + S Q +LR++ +++LY +   + +V      A           L     
Sbjct: 101 RAHPR-FDSLETSRQDVLRLAASRVLYGE--PHGLVARQSALA-----PPDAQALGALPE 152

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDI 186
              + E +   +R    + +P++  +R    +G++   A          +     +K D 
Sbjct: 153 AAAALEALPARERFPIAASLPDFLADRFLQTFGRDAARAAEAMNERAPLVARANLLKGDR 212

Query: 187 ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +  A +L A  +      L  +        +  SL  F EG+  +QD  + +        
Sbjct: 213 DALAQRLKAETVDVKPTPLSPMGLVLETRINAFSLESFREGMLELQDEGSQLLGM-LVDA 271

Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--- 294
               V+D CA  GGKT Q    + +   + ALD+ +RR+E L+    R  ++        
Sbjct: 272 PPTRVVDACAGAGGKTLQLAAQMKNRGDLHALDIDERRMEDLKKRARRAGVHNVRAQLIP 331

Query: 295 ----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
               E DA     K   D VLVDAPCS TGT RR PD  +    +D+      Q+ LL +
Sbjct: 332 HEGPEADAALTPLKGKADRVLVDAPCSGTGTFRRKPDARYRLTPEDLEMHVGRQKALLAR 391

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             + VKPGG +++  CS+ ++++E VV+  L   P   E      A     ++A  + P 
Sbjct: 392 FATLVKPGGRLIYGTCSVLREENENVVEDFLAKHP---EFTVKPVAELLGAELAEKVGPG 448

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++R+ P         + G DGFF   L R
Sbjct: 449 PFLRLAPH--------THGTDGFFGAVLVR 470


>gi|74318616|ref|YP_316356.1| putative tRNA and rRNA cytosine-C5-methylase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058111|gb|AAZ98551.1| putative tRNA and rRNA cytosine-C5-methylase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 415

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 161/448 (35%), Gaps = 60/448 (13%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++  L  V+  +     +L   + ++    L  RD+  V   V   LR    +  V  
Sbjct: 9   QLATQALDLVLDFKRPADAVLSAFFRENR--KLGARDRGFVAEAVFGVLRRYRYLSHV-- 64

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 +P        +  +                        +        K     L
Sbjct: 65  ------VPAANPRTLIIAWL---------------------IKIQGMSGAALEKFAKPEL 97

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
               R        +A  + +P+W  ++L        +LA+  A   P  +D+ V     D
Sbjct: 98  VDHIRSARPEGLPLAVTAELPDWVVDKLRPSMSDADILALGRALQQPAPLDVRVNTQKTD 157

Query: 186 IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            +    +L A  +                  +I   P F +G   VQD  + +   L   
Sbjct: 158 RDVVLARLQAEGMAVEITPFSPWGLRFKDHPAINRHPLFLDGSLEVQDEGSQLLALLLEA 217

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292
                V D CA  GGK       + S  ++ A DV+++RL KL+  L R  L        
Sbjct: 218 RRGEMVCDFCAGAGGKTLAVGATMASTGRLYAFDVAEKRLAKLKPRLARSGLSNVMPELI 277

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             E D          D VLVDAPCS  GT+RR+PD+ + +  + + + A  Q  ++    
Sbjct: 278 ASENDVRVKRLAGKLDRVLVDAPCSGLGTLRRNPDLKFRQSAESVAELAAKQASIVRAAA 337

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V++ CS+  +++E +V+ ++        L P+N    +     + L     
Sbjct: 338 RLLKVGGRLVYATCSILPEENEAIVEGLVAE--GGFALQPVNEILAQH---KIPLDTGPM 392

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++++P             DGFFA  L +
Sbjct: 393 LKLSP--------AIHRTDGFFAAVLTK 412


>gi|83748628|ref|ZP_00945646.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
 gi|207741954|ref|YP_002258346.1| rna methyltransferase (sun protein) [Ralstonia solanacearum
           IPO1609]
 gi|83724672|gb|EAP71832.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
 gi|206593340|emb|CAQ60267.1| probable rna methyltransferase (sun protein) [Ralstonia
           solanacearum IPO1609]
          Length = 443

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 166/438 (37%), Gaps = 34/438 (7%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           +R+ ++L   +D               +  V+ +   T R+L   D ++  ++       
Sbjct: 22  LRQGMALPQAIDAACAGQPGPT-----RGAVQDLAYRTTRWLGSADWLIRTLIPRPPAEG 76

Query: 79  KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                 LLRV++AQ+L        + VVD AV  A  D +  H   +VN +LRR  RE+ 
Sbjct: 77  TA---NLLRVALAQLLDTPPPYAPFTVVDQAVRAASADPKLAHAKGMVNGVLRRFLREQG 133

Query: 137 E----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186
           +    +       +  P W+   +   Y       ++     P  +       + V   +
Sbjct: 134 DLAAAMQADPVAATNYPVWWINAVREAYPDAWQAILAAGNRRPPMVLRVNPRRVPVDAYL 193

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
              A                     +  LPGFAEG   VQDA A +   L        VL
Sbjct: 194 ARLAEGGIEAERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAGAQLAAALLDVAPGQRVL 253

Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302
           D CAAPGGKT     +V G  V AL+    R E++  NL RL   A            + 
Sbjct: 254 DACAAPGGKTGHLLELVDGLDVVALESDGARAERIGENLARLGQIATVCVGDAAKPDAWW 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +LVD PCS+ G +RRHPD+ W R   D+   A  QR ++    + +KPGG +V
Sbjct: 314 DGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAVLQRDIVSALWACLKPGGKLV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CS+   + E  V+         + L           + A        +   P     
Sbjct: 374 YVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPAMPEAAPVGGFVPGVSSLP----- 428

Query: 423 IDGVSSGMDGFFAVALRR 440
                   DGF+    ++
Sbjct: 429 -----LDHDGFYYAVFQK 441


>gi|163797470|ref|ZP_02191421.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199]
 gi|159177219|gb|EDP61778.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199]
          Length = 439

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 101/449 (22%), Positives = 170/449 (37%), Gaps = 41/449 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             +L  +         +LD    D  +  +   D+ ++   V    R   R+D  +    
Sbjct: 2   IEVLEAIGATERPADRVLDRYLKDRRY--IGSGDRGMIANRVWAVQRRRARLDWWIHK-A 58

Query: 72  ISSLPRKKY--SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
              L R      L  ++ +        D AD A +    + + R   +       +++ R
Sbjct: 59  GKGLQRNARGRVLADVVLI--------DGADVARIAELFDGS-RHAPDAVTRDESDALRR 109

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKE---RVLAISDACISPLYIDLTVKFDI 186
            V R            +  P W   R++  +G +    V  + +     L I+     D 
Sbjct: 110 LVGRSLDHPDMPPPVQAECPNWLWPRMQAVFGDDVDLAVRTLGEEASFDLRINPLAGADR 169

Query: 187 ETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                +L    +P     L            +  +P F +G   VQD  + I   L G  
Sbjct: 170 PAVIAELAVASVPAEPTPLSPLGLRLDRRRPVDRMPAFKDGRIEVQDEGSQIAAALVGAQ 229

Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE---DII 294
               V+D CA  GGK    A  + +  ++   DVSK RL++    L R  +       ++
Sbjct: 230 PGQLVVDYCAGAGGKSLALAADMANKGRLLLFDVSKSRLDRAAVRLRRGGVNNAERRPLV 289

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D          D VLVDAPC+ TGT RR+PD  W  D D + +    QR +L +  + 
Sbjct: 290 EGDKSVKRLAGKVDRVLVDAPCTGTGTWRRNPDAKWRYDADALAEITKVQRTILERAAAL 349

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM---AMALSPEG 411
           VKPGG +V+  CS+   ++E+VV   L  +    + +P+   +  ++         +   
Sbjct: 350 VKPGGRLVYVTCSVLTDENEQVVDGFLAET-TSFKALPMAEVWAATVGASGGGACPADGA 408

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++R++P           G DGFF   L R
Sbjct: 409 YLRLSPH--------RHGTDGFFVAVLER 429


>gi|261364296|ref|ZP_05977179.1| methyltransferase, RsmB/NOP family [Neisseria mucosa ATCC 25996]
 gi|288567546|gb|EFC89106.1| methyltransferase, RsmB/NOP family [Neisseria mucosa ATCC 25996]
          Length = 419

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 164/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +      TLR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPADAVLSGYFREHK--KLGRQDRHEIAETAFATLRHYQK----ISAAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLSGL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDDLHTAAELPQWLVEQLQKHFNEEEILAFGRSINQAAPLDIRVNTLKGRRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       +V+  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMVNKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + + K    Q  +L      V
Sbjct: 285 HDSRIARLTGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETVAKLLEQQHSILDAAAKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P    L          ID+        ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENEMQVERFLEEHPEYELLDCAELLAGLKIDLNTG----KYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418


>gi|295689967|ref|YP_003593660.1| Fmu (Sun) domain-containing protein [Caulobacter segnis ATCC 21756]
 gi|295431870|gb|ADG11042.1| Fmu (Sun) domain protein [Caulobacter segnis ATCC 21756]
          Length = 426

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 161/448 (35%), Gaps = 52/448 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            +  +L+ +  +   +   L      + +     +D+  V  +V   LR    +  ++  
Sbjct: 9   AAIEVLTEIETRHFPVKMALKRWGEAARYAG--SKDRAFVSGLVLDALRRKRSLGWMMGD 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                       +  +L              +         A+   E   F  L ++   
Sbjct: 67  ASPRG------VVLGVL-------------AFTWAWTPERIAEATAEEHGFGALTDAERE 107

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKFDIET 188
           R++            +   P+W +ERL    G ++ + +          + +        
Sbjct: 108 RLASPIALGNAPAPVVGDYPDWLEERLIRTLGADQTVEMRALSERAPVDLRVNTLKTDAE 167

Query: 189 WAHKLNAVMLPTGGIRLKELPE-----------SIVSLPGFAEGVWWVQDASASIPVQLF 237
            A K  A +       L                S+ ++P F++G + VQD  + I   + 
Sbjct: 168 RAAKALAPIHAAPAGILPNAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAAVA 227

Query: 238 GTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G +    VLD CA  GGKT   A  + +  ++ A D   RRL        R  +    I 
Sbjct: 228 GEVKGKQVLDFCAGGGGKTLALAAAMGNSGQIFAHDADARRLADTIRRGQRAGVRNLQIR 287

Query: 295 EMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                          D V VDAPC+  GT RRHPD  W    D + K    Q  +L    
Sbjct: 288 SPIEATPLKGLEGKIDVVFVDAPCTGAGTWRRHPDAKWRLSPDQLAKRQIEQDSVLEDAA 347

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
           +FVK GG +V+  CSL   ++E+ V   L   P    + P+  A      +   ++PEG+
Sbjct: 348 TFVKAGGRMVYVTCSLLTDENEDRVAGFLERHP-EFTVKPIALA-----GVEQHVTPEGY 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +R+TP          +G DGFFA  L R
Sbjct: 402 LRLTP--------YRAGTDGFFAAVLER 421


>gi|167917913|ref|ZP_02505004.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           BCC215]
          Length = 420

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 101/446 (22%), Positives = 167/446 (37%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +     + V   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG+  VQD  + +   L        
Sbjct: 167 DNLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V   L + P   ELVP + A  +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRALAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|298256363|gb|ADI71472.1| putative tRNA/rRNA cytosine-C5-methylase [Amycolatopsis orientalis
           subsp. vinearia]
          Length = 474

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 162/460 (35%), Gaps = 43/460 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L+ V  K      +L     +   R ++ RD  L   +     R    +DA
Sbjct: 32  PARQAAFDVLAAVRTKDAYANLVLPDLLRE---RRITGRDAALATELAYGASRAQGLLDA 88

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V++      L +   ++   LR+ V Q+L   +  +A V   V+  + +          N
Sbjct: 89  VIESCAERPLSQTDPAVLDALRLGVYQLLRTRIPGHAAVTSTVDLVRAE-GGSWATGFAN 147

Query: 126 SILRRVSREKIELLQR-------------IAGISIIPEWFKERLENFYGKERV--LAISD 170
           +++R+VS +                     A  +  P W         G +     A  +
Sbjct: 148 AVMRKVSEKDEAAWLDELAPDDAADPIGAYALRTAHPRWIARSFAEALGDKGAGLKAALE 207

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
           A  +   + L  +      +  A             G+ L         +    E +  V
Sbjct: 208 ADDARPEVHLVARPGEISADELAAITGGDPAPYSPYGVHLPAGAGDPAGMEPVRERLAAV 267

Query: 226 QDASASIP----VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLR 280
           QD  + +      ++     +   LDLCA PGGK A L    A   A  D  +    + +
Sbjct: 268 QDEGSQLCAIAATKVPVEGTDERWLDLCAGPGGKAALLGALAALSGATVDAVEIAPHRAK 327

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
                       +   D  +   +  +D +LVDAPCS  G +RR P+  W R   D+   
Sbjct: 328 LVEKATTGLPVKVHVADGRESGLEPGYDRILVDAPCSGLGALRRRPEARWRRQPSDVADL 387

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q +L+    + ++PGG + +  CS    ++E V+ +  R   +  E++     +   
Sbjct: 388 TKLQGELINAAYALLRPGGALTYVVCSPHLAETEGVLTETARR--LKAEVLDARGLFPGV 445

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++        ++++ P           G D  F   LR+
Sbjct: 446 PELGDGP----YVQLWPH--------RHGTDAMFCGVLRK 473


>gi|254251627|ref|ZP_04944945.1| hypothetical protein BDAG_00819 [Burkholderia dolosa AUO158]
 gi|124894236|gb|EAY68116.1| hypothetical protein BDAG_00819 [Burkholderia dolosa AUO158]
          Length = 420

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/446 (21%), Positives = 157/446 (35%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     +       
Sbjct: 72  PARRLT-------LLGLMQ------------------TVGRNALKPFVSADEAAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
           +       +   + +P+W  + L   +  + +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALATRFDADELAQLAAALNYPAPLDLRANVLKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L AV +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 DGLRAVGIDAGATPFAPHGVRVVGKPALTRLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT      + S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSVDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E++V + L   P    LVP         D  +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENEQIVAQFLADHP-DFVLVPAQKVL---ADQRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|312114445|ref|YP_004012041.1| Fmu (Sun) domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219574|gb|ADP70942.1| Fmu (Sun) domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 432

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 93/462 (20%), Positives = 148/462 (32%), Gaps = 51/462 (11%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M++G  AR   +  +LS +  +    +  L        F      D+  +  +V  +LR 
Sbjct: 1   MQTG--ARLQAAIEILSEIRERGRPASVALADWGRSHRFAG--SGDRAWIGNLVYDSLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              +  +++          +      L  S      L   D AV+    E A        
Sbjct: 57  KGSLAFLMNC------DEPRPVALAALHCS----WGLTADDIAVLCSGEEHAPEPLTAAE 106

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A L +  L                    PEW            R +    A  +   +D
Sbjct: 107 IAGLESGDLSAAPAHVQGD---------YPEWLAAS-FAAAFGARAIEEGKALANRAPVD 156

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQ 226
           L V     T    L A                            ++ + P   +G + VQ
Sbjct: 157 LRVNTLKATRDKVLKAFDRHNAVETPWSPIGVRLPPREGGARNPNVEADPAHGKGWFEVQ 216

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283
           D  + I   +      + V DLCA  GGKT   A  + +  ++ A D    R   +   L
Sbjct: 217 DEGSQIAALIADAEPRMQVADLCAGSGGKTLALAAHMQNTGQIYAYDADATRFRPIFERL 276

Query: 284 DRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            R        ++              D VLVDAPC+ TG  RR PD  W      + +  
Sbjct: 277 KRAGARNVQTLQPGETAALDPLAGHMDLVLVDAPCTGTGVWRRKPDAKWRLSPAQLDERV 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL-VPLNSAYWKS 400
             Q  LL    + VKPGG + +  CS+  ++++  ++  L  +P    + V   +     
Sbjct: 337 ATQSTLLDVAATLVKPGGKLAYVTCSILPEENQHQIEAFLARAPGFAAIDVARRAKDVLG 396

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +  A + EG           +   S   DGFF   L R  
Sbjct: 397 RTVETAYAGEG-------HGLLLTPASHETDGFFIALLTRTA 431


>gi|227542164|ref|ZP_03972213.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181993|gb|EEI62965.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 620

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 108/506 (21%), Positives = 182/506 (35%), Gaps = 94/506 (18%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            RL++   L  V          L  E  +     LS RD      I   T+R +  +D +
Sbjct: 140 PRLITLSALGAVFNDGAYGNIALPREITE---AGLSGRDAAFATEIGYGTMRMVGVLDEI 196

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +       +      +   LR+ + Q+LY  V D+A VD +V         +     VN+
Sbjct: 197 IGSCSSRPMSELDPIVLNALRMGIYQLLYTRVEDHAAVDTSVRLV-----PQRVKGFVNA 251

Query: 127 ILRRVSREKIELLQ----------RIAGISIIPEWFKERL-------------------- 156
           ILR V ++ +E             ++A  +  PEW                         
Sbjct: 252 ILRAVQKKPLEQWIEELAPEGKLAQLAFRTGHPEWIARSYLATLSAPSGAVPSANGVGTE 311

Query: 157 ----------------------------ENFYGKERVLAISDACISPLYIDLTVKF---D 185
                                        +    + +    +A  +   + L  K     
Sbjct: 312 SSADGARADASAARSDPSTDPSAEPSTGSSTILFDELAKALEADSTRPIVHLAAKPGEIS 371

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP----VQLFGTLN 241
            +  A              +     +        E + ++QD  + +     V++    +
Sbjct: 372 ADELALITGGEEGAYSPYAVYLEGGNPADFEPVQEKLAFIQDEGSQLIGAALVRVDVDND 431

Query: 242 NLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               LDLCA PGGK   +     + GA VTA++++  R + +R   +   L    ++  D
Sbjct: 432 AGRWLDLCAGPGGKATMIGSLAAIDGATVTAVEIAPHRGDLIRKATE--GLP-VTVVVGD 488

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                    FD VLVDAPCS  G++RR  +  WT+D  DI +    Q +LL  G+S  KP
Sbjct: 489 GRTVDVGSSFDRVLVDAPCSGLGSLRRRQESRWTKDESDIEELTALQYELLEAGVSRCKP 548

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG+VV+S CS D +++ E+V K L + P  VE +  +       ++      E  +++  
Sbjct: 549 GGVVVYSTCSPDLRETREIVDKALVTLP--VEELDAHPLVAPMDNVGR----EKSVQMW- 601

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                      G D  F   LR+  +
Sbjct: 602 -------TYRHGTDSMFFAVLRKKAE 620


>gi|169824361|ref|YP_001691972.1| putative rRNA methylase [Finegoldia magna ATCC 29328]
 gi|167831166|dbj|BAG08082.1| putative rRNA methylase [Finegoldia magna ATCC 29328]
          Length = 423

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 175/424 (41%), Gaps = 36/424 (8%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89
                   +  L +RD   ++  V   +     +D V+       + R    + ++LR++
Sbjct: 22  SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFVDYVISKCSDLEINRLDKIVLEILRMA 81

Query: 90  VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-RIAGISII 148
             +IL++  ADYAVVD AVE A        +   VN++LR V R  ++           I
Sbjct: 82  TTEILFMKTADYAVVDEAVELAGSITR---YKDYVNAVLREVCRINVDSEDLEDDIKFSI 138

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA-------VMLPTG 201
            +   + L   Y K+ V  +  +        +      E                     
Sbjct: 139 NKDLLKMLNKSYSKKTVRKLLKSFFYKSDFVIKQNKLKENNLKINLENQGFALNDHPFLK 198

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
              + E PESI+    F EG + +QD S S+  ++   L N  +LD+CAAPG K+  +  
Sbjct: 199 DSFIVENPESIIDTKEFKEGKFLIQDGSCSLCAEILEPLENSIILDICAAPGSKSCNIQE 258

Query: 262 SGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPC 316
                      D+++ ++ +++ N+++  +     +  DA          FD +LVDAPC
Sbjct: 259 ITNNQSIIYCNDINQNKIARIKENVEKCAVKNVQYMNFDATTLQKDLINKFDRILVDAPC 318

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S+TG I ++P++   R   D+      QR++L     ++K GGI+V+S CSL K+++EE 
Sbjct: 319 SATGVINKNPEIKLFRTKKDVENLVNTQRQILENCEKYLKKGGILVYSTCSLLKEENEEN 378

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           V+  + +             + K  D+        +I++ P           G  GFF  
Sbjct: 379 VE-FIENR-----------LHLKRKDIEFYGDKNEFIKLMP--------FQKGTQGFFIS 418

Query: 437 ALRR 440
              +
Sbjct: 419 KFVK 422


>gi|227500111|ref|ZP_03930182.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
           tetradius ATCC 35098]
 gi|227217826|gb|EEI83123.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
           tetradius ATCC 35098]
          Length = 433

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 94/441 (21%), Positives = 181/441 (41%), Gaps = 50/441 (11%)

Query: 25  LTCLLDLEYGDSAFRLLSQRDQ--ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
           +  + + +  +     L+++ Q       ++   L     +D ++  +    + +   ++
Sbjct: 12  VNIIYEDKKSNDEINYLAKKVQGLAYATKLIYGVLENKIYLDYMIGKLSKVKIKKIHKNV 71

Query: 83  QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR--------E 134
             +L + +  I +L   DYA+VD  VE  K+  +N+  A  VN+ILR   R         
Sbjct: 72  LTILEMGLYNIHFLATKDYAIVDKLVELCKK--KNKRSANFVNAILRNFIRNEEDLAKIY 129

Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAH 191
             + ++ ++    +PE     + + YG                + + V     D E+   
Sbjct: 130 INDDIKALSIRYSMPEEISRYIYDNYGMAYTKNFLRYTNDEARLSIRVNSLKTDRESLKK 189

Query: 192 KLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +L A+         +    +   P  + +   F EG++ +Q  ++   V++     N  +
Sbjct: 190 RLEALGYELSLSKISDRALIIHNPSGLANSLEFKEGLFTIQQEASMKTVEVLNPKRNSRI 249

Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD+CAAPG KT+       +  K+ A D+S  +L  ++ N++RL L   +I   D   + 
Sbjct: 250 LDICAAPGTKTSYLAEYTSNTGKIIANDISTNKLCLIKENIERLALTNIEIKSFDGSVFN 309

Query: 303 PKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
            +    FD +LVDAPCS  G + R P++ + R  DDI   +  QR++L   I ++K GG 
Sbjct: 310 KEYEKSFDYILVDAPCSGLGVMARKPEIRYNRSLDDIRTLSILQREILDTSIRYLKDGGE 369

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L   ++ +     L+     +ELV +                           
Sbjct: 370 LVYSTCTLGPIENLDNFNY-LKGH-DQLELVQVEGK----------------------DY 405

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
            +        DGFF    ++ 
Sbjct: 406 IEFVCFEDKTDGFFISKFKKK 426


>gi|193222389|emb|CAL62602.2| putative methyltransferase [Herminiimonas arsenicoxydans]
          Length = 418

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 102/446 (22%), Positives = 174/446 (39%), Gaps = 56/446 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L  ++R        L   + D     L  R++ +V   V   LR      AV      
Sbjct: 13  EVLREILRFTGPADSTLSRYFRDHP--RLGSRERGVVAEAVYGLLRNK----AVYTSFAE 66

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S       +++++  + +A  + +D       +                        +  
Sbjct: 67  SG---NGPTMRRMTLLGLADAVGVDALGGLSEEETEWL-------------------KHV 104

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
            +    L      + +PEW  ++L    G+   L ++ A   P  +DL V       E  
Sbjct: 105 MQIDRTLLPSLLRANLPEWLFDKLVARDGEAATLELAYAMNQPAPLDLRVNAIKATREDV 164

Query: 190 AHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
             +L    +         L   +       +LP F  G   VQD  + +  Q+ G     
Sbjct: 165 VAELAKAPILCELTPFAPLGIRVIKKPALQNLPLFKSGAIEVQDEGSQLLSQIVGAKRGE 224

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296
            V+D CA  GGKT      + +  ++ A D+S++RL KL+  L R  L          E 
Sbjct: 225 MVVDFCAGAGGKTLSLGATMRNTGRLYAFDISEKRLVKLKPRLARSGLSNVHPVQIAHEN 284

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           DA         D VLVDAPCS  GT+RR+PDV W +    +V+    Q  +L      VK
Sbjct: 285 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDVKWRQTPQSLVELNAKQASILAGAARLVK 344

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CS+  +++E +V++ L +      LVP++    +     + L+ + +++++
Sbjct: 345 AGGRLVYATCSILDEENEAIVEQFLAAR-EDFVLVPMSEVLAE---QKVDLAMDKYLKLS 400

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P             DGFFA  L+R  
Sbjct: 401 P--------AKHQTDGFFAAVLQRKT 418


>gi|241760436|ref|ZP_04758530.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           flavescens SK114]
 gi|241319105|gb|EER55598.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           flavescens SK114]
          Length = 417

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 197/449 (43%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 4   AQKLAADSVAAV-AEGRNLQDVLAEIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    + F    N+
Sbjct: 61  LGQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 117

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L N Y K     I+ A  S   + L V
Sbjct: 118 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLRNHYPKHW-HNITTALQSHPPMTLRV 176

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +P         + E    +  LPGF++G+  VQD  A     
Sbjct: 177 NRRHGNAESYLEKLAAEGIPARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGAQRAAY 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +   VTALD+ + RL +++ NLDRL      + 
Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQTASLT 296

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDAVL D PC+++G  RR+PDV W R   D VK+A  Q  LL   
Sbjct: 297 CADAQDLTAWYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDAL 356

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +   G ++ + CS+  ++++  +QK L       EL+                    
Sbjct: 357 WQTLTKNGRMLLATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 399

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 400 ---LLPNKHQ---------DGFYYALIKK 416


>gi|300310511|ref|YP_003774603.1| tRNA and rRNA cytosine-C5-methylase [Herbaspirillum seropedicae
           SmR1]
 gi|300073296|gb|ADJ62695.1| tRNA and rRNA cytosine-C5-methylase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 419

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 107/448 (23%), Positives = 172/448 (38%), Gaps = 60/448 (13%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  V+R        L   + D+    L  R++ ++   V   LR       VL     
Sbjct: 13  ELLREVLRFTGPADVTLSRYFRDNP--RLGSRERGVIAEAVYGLLRNKT----VLTNFAE 66

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S        +++L  + +A                             A L       + 
Sbjct: 67  SG---SGPMMRRLALLGLA---------------------DAVGAESIAGLQEGEADWLE 102

Query: 133 REKIELLQRIA--GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
           R       ++A    S +P W  ++L    G+   L +++A   P  +DL V     D +
Sbjct: 103 RVAQIDRTQLAAQMRSNLPPWLWDKLVARMGEAATLELAEAMNRPAPLDLRVNALKADRD 162

Query: 188 TWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           T   +L    +         L   +       +LP F +G   VQD  + +  Q+ G   
Sbjct: 163 TVIAELAKAPVACEPTPYSPLGLRVLKKPALQNLPLFKDGAIEVQDEGSQLLAQIVGAKR 222

Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294
              V+D CA  GGKT     L+ +  ++ A DVS++RL KL+  L R  L          
Sbjct: 223 GEMVVDFCAGAGGKTLALGALMRNTGRLYAFDVSEKRLAKLKPRLARSGLSNVHPVVIAH 282

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E DA         D VLVDAPCS  GT+RR+PD+ W +  + + +    Q  +L      
Sbjct: 283 ENDAKVKRLAGKLDRVLVDAPCSGLGTLRRNPDMKWRQTVETLAEMRAKQSSILASAARL 342

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V+ GG +V+  CS  +++++EV+   L+S P  +    L        +  +AL    +++
Sbjct: 343 VRAGGRLVYGTCSFLEEENDEVIADFLQSHPDFI----LRPMGEVLAEQKIALEMGDYLK 398

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P             DGFFA  L R  
Sbjct: 399 LLPH--------QHQTDGFFAAVLERRA 418


>gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
           Rock3-42]
 gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
           Rock3-42]
          Length = 360

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 164/372 (44%), Gaps = 34/372 (9%)

Query: 93  ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144
           ++YLD V + A +  AVE AKR + ++  A +VN +LR + RE         + ++R+A 
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196
            +  P W  +     YG E    + +  + P      V  D  T    +         A 
Sbjct: 60  ATSHPVWLVQEWTAEYGLETAEKMCEMNMLPPVPTARVNVDKITVEEAITLLASEGIEAK 119

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                   ++    ++     F +G   +QD S+ +  +         +LD CAAPGGKT
Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKT 179

Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310
             +        +V +LD+   ++  ++   +RL L   +   +D     ++   + FD +
Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKI 239

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K
Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILEKIAPLLKQGGRLVYSTCTIEK 299

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++E+V+++ L+  P   E     +   +  +       EG ++I P             
Sbjct: 300 IENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA--------T 348

Query: 431 DGFFAVALRRLI 442
           DGF+   LR+ +
Sbjct: 349 DGFYIACLRKKV 360


>gi|88705380|ref|ZP_01103091.1| Ribosomal RNA small subunit methyltransferase B [Congregibacter
           litoralis KT71]
 gi|88700470|gb|EAQ97578.1| Ribosomal RNA small subunit methyltransferase B [Congregibacter
           litoralis KT71]
          Length = 434

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 188/437 (43%), Gaps = 41/437 (9%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
              SL    + +        L +RD+ L R I   TLR   R+DA+L  +L   L  K  
Sbjct: 20  GGESLDRSFNAQIEK-----LPERDRALCREISYGTLRQFHRLDALLAQLLQKPLRAKDR 74

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI--EL 138
            +  L    + Q+  + V  +A V   V+ A    + R    L+N++LRR  R++     
Sbjct: 75  DVHALALAGLYQLTEMRVPAHAAVSATVDAA-SVLKKRQLTGLLNAVLRRFQRDEATLTE 133

Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNA 195
               A  +  P+W    L   +   R   I+ A  S   + L V       + +   L+ 
Sbjct: 134 KLTAAQNAAHPDWLWAALGEHWPDYR-EEIAAANNSHPPMTLRVNLSRGGRDEYREMLDQ 192

Query: 196 VMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
             + +   +L            + SLPGF  G+  VQD +A +  QL        +LD C
Sbjct: 193 AGIASQAGQLSPAALTLDQAVDVTSLPGFEAGLCSVQDEAAQMAAQLLAPRAGERILDAC 252

Query: 250 AAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCP 303
           AAPGGKT     L  SG ++TA+D+S+ RL ++R NLDRL L A          + +   
Sbjct: 253 AAPGGKTGHLLELQRSGMQLTAMDISEERLHRVRENLDRLGLEASLLVGDGARPSAELKA 312

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +  FDA+L+D PCS++G IRRHPDV   R  +D    A  Q  +L      + PGG +++
Sbjct: 313 QAPFDAMLLDVPCSASGVIRRHPDVKILRRPEDTAGFARQQNAILDGLWPLLAPGGRLLY 372

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
            +CS+   ++ EVV   +       E         + + MA +       ++ P      
Sbjct: 373 VSCSIMPGENSEVVAAFVSRHADARE---------EPLAMAASQPCAHGRQLLP------ 417

Query: 424 DGVSSGMDGFFAVALRR 440
               +G DG +   L +
Sbjct: 418 --RPNGSDGLYFAMLYK 432


>gi|227484654|ref|ZP_03914970.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227237374|gb|EEI87389.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 428

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 101/455 (22%), Positives = 182/455 (40%), Gaps = 55/455 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  ++L  V+ +    + +++     ++   L       +   V   L     ID ++ 
Sbjct: 5   AIIFNILRRVIYEDEKSSDMINSYAAKASNLSL-------ITKTVYGVLENKIYIDYMIR 57

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +    L +    +  +L + +  I +L+  DYA VD  V+  K   +N+     VN+IL
Sbjct: 58  KLSDVRLKKIHKHVLLILEIGIYNIHFLETKDYATVDKLVDLTKE--KNKRSTGFVNAIL 115

Query: 129 RRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           R   R++ E+ +          +     PE   + + +FYG +   A          + +
Sbjct: 116 RSFIRDEKEIAKIYETDDIKSLSIRYSFPEEITKYIYDFYGMDYTKAYLRDAGRIRDLAI 175

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V       E     L          ++         P  + S   F +G++ +Q  ++ 
Sbjct: 176 RVNTLKISREDLKKLLIKAGFEIEDGKISPNSLLVKNPAGLASCEAFKDGLFTIQQEASM 235

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
             V++     N  +LDLCAAPG KT        +  K+ A D+SK + + +  N+ RL L
Sbjct: 236 KVVEVLNPKENSKILDLCAAPGTKTTYLAEFTKNTGKIIANDISKAKNKLILENIQRLAL 295

Query: 289 YAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
               +   D   F    +  FD  LVDAPCS  G + R P++ + R+ + IV+ A  Q+ 
Sbjct: 296 ENISLTNYDASTFVSAFENEFDFCLVDAPCSGLGVVGRKPEIRYNRNKETIVRLADLQKD 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L+  I +VK GG +V+S C+L   ++     K L  +   +EL                
Sbjct: 356 ILVNAIKYVKKGGYLVYSTCTLGPLENRNN-FKFLMDNK-DLEL---------------- 397

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 I+I      +     +  DGFF    R++
Sbjct: 398 ------IQIDGQDFIEYKSFEANTDGFFISKFRKI 426


>gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
           4342]
 gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
           4342]
 gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 360

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 165/372 (44%), Gaps = 34/372 (9%)

Query: 93  ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144
           ++YLD V + A +  AVE AKR + ++  A +VN +LR + RE         + ++R+A 
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196
            +  P W  +   + YG E    + +  + P      V  D  T    +         A 
Sbjct: 60  ATSHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEEAIALLASEGIEAK 119

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                   ++    ++     F +G   +QD S+ +  +         VLD CAAPGGKT
Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKT 179

Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310
             +        +V +LD+   ++  ++   +RL L   +   +D     ++   + FD +
Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKI 239

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K
Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 299

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++E+V+++ L+  P       +     + +    +   EG ++I P             
Sbjct: 300 IENEQVIERFLQEHPEFEWDTTIKERMPEKLG---SYIDEGQVQILPHYFA--------T 348

Query: 431 DGFFAVALRRLI 442
           DGF+   LR+ +
Sbjct: 349 DGFYIACLRKKV 360


>gi|86160386|ref|YP_467171.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776897|gb|ABC83734.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 455

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 125/458 (27%), Positives = 183/458 (39%), Gaps = 44/458 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V       +    L+    A   L  R+  L   +V  TLR    +DA 
Sbjct: 12  ARGIAFEVLRRVDEGGAYASR--ALDAALGAAGALDPREAGLATQLVYGTLRRALALDAA 69

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L       L     + +  LR+   Q+L L    +A V   V  AK     R  A  VN+
Sbjct: 70  LAPHSRRPLAELDPAARVALRLGAYQLLVLGTPAHAAVGETVTLAKAADHGR-AAGYVNA 128

Query: 127 ILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +LR +SR                 +A    +P W  E    + G    LA++ A  +P  
Sbjct: 129 VLRALSRAPRFPDPPALEADPAGHVAAAEALPRWVAEEWVAWLGAGEALALARAMNAPAP 188

Query: 178 IDLTVKFDIETWA-----HKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-WWVQDASAS 231
           + +    D E          L A         +     S+  L   A  V + VQD +A 
Sbjct: 189 LCVR-TPDREALLGRARAAGLTAAPAARAPGGVVLTGASVAELAHAAGDVPFQVQDEAAQ 247

Query: 232 IPV---QLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285
           +               VLD CAAPGGK   L      GA+V A+++  R+ ++L     R
Sbjct: 248 LVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAVELHPRKADELAREAAR 307

Query: 286 LHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             L A  ++  DA    P      FDAVLVDAPC+  GT+RRHP++   R   D+ + A 
Sbjct: 308 RGLPAVRVVCADAGKPIPGLEPGSFDAVLVDAPCAGLGTLRRHPELKLRRAPGDLPRMAA 367

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR++ L    + +PG  VV+S CSL + +  EVV+ +L          P  + +     
Sbjct: 368 LQRQIALNAARYARPGAPVVYSICSLSRAEGPEVVEALLAQ---GFRRAPPPAGFP---- 420

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A  L  +G +   P           G DGF+A  L R
Sbjct: 421 -ADVLDAQGDLLALPS--------RHGTDGFYAARLVR 449


>gi|311107260|ref|YP_003980113.1| NOL1/NOP2/sun family protein [Achromobacter xylosoxidans A8]
 gi|310761949|gb|ADP17398.1| NOL1/NOP2/sun family protein [Achromobacter xylosoxidans A8]
          Length = 809

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 96/449 (21%), Positives = 156/449 (34%), Gaps = 59/449 (13%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L  +++        L           L  RD+  V   V   LR L R          
Sbjct: 359 RVLGEILQWTYPADAALSHWLRHHP--NLGARDRSEVAEAVYDVLRHLRRY----RQFGE 412

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S +      L  +L ++              +   ++ A+ +               +  
Sbjct: 413 SGVGPASRRL-AILGLAA-------TLGAEALTEGMDAAEAEWL-------------QRV 451

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
            +        A    IP+W  ERL      E    + +A      +DL V     + +  
Sbjct: 452 SQIDLATLPRAVRGSIPDWLDERLGAMDSPET---LIEALNRQASLDLRVNPLKVERDAM 508

Query: 190 AHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
             +L                     E   +I   P F  G   VQD  + +   L     
Sbjct: 509 LTELQQGAGRYEPVAMPYSPWGIRMEGRPAINRWPQFENGSIEVQDEGSQLLALLVAPRR 568

Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294
              ++D CA  GGKT     L+ S  ++ A DVS  RL + +    R  L     +    
Sbjct: 569 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVVIDS 628

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E DA           VLVDAPCS  GT+RR+PD+ W +  + + +    Q ++L      
Sbjct: 629 ENDARVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPEALAELGQLQERILNSAARC 688

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V PGG +V++ CSL  +++E   ++ L S P    L        +   + +      +++
Sbjct: 689 VAPGGRLVYATCSLLAEENEVQAERFLASHPDFERLDAAEILAARCETLKLDGP---YVQ 745

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           + PD+         G DGFFA    R  +
Sbjct: 746 LRPDV--------HGTDGFFAAVFERRKK 766


>gi|307730760|ref|YP_003907984.1| Fmu (Sun) domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307585295|gb|ADN58693.1| Fmu (Sun) domain protein [Burkholderia sp. CCGE1003]
          Length = 419

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 98/443 (22%), Positives = 162/443 (36%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V+R            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLRLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +  A  + +   V +A+    +        S+  R+  
Sbjct: 72  PARRMA-------LLGL-----MQTAGRSALKPFVSEAESKWLDHVATIDPESLPLRI-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                         +P+W  + L   +    +  ++ A   P  +DL         +   
Sbjct: 118 -----------RLNLPDWIHQALAKRFEAAELAQLAAALNYPAPLDLRANPIKASRDEVL 166

Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L+   +  G                +  L  F +G   VQD  + +   L        
Sbjct: 167 SALSKAGIEAGATPFAPFGVRVAGKPPLTKLDAFQQGWLEVQDEGSQLLCSLVAPKRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A D+S+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E VVQ+ L   P    LVP         D  + L    ++ + P
Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLADHP-DFALVPAREVL---ADQRIDLEMGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|302380559|ref|ZP_07269024.1| putative ribosomal RNA small subunit methyltransferase B
           [Finegoldia magna ACS-171-V-Col3]
 gi|302311502|gb|EFK93518.1| putative ribosomal RNA small subunit methyltransferase B
           [Finegoldia magna ACS-171-V-Col3]
          Length = 423

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 175/424 (41%), Gaps = 36/424 (8%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89
                   +  L +RD   ++  V   +     ID V+       + R    + ++LR++
Sbjct: 22  SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFIDYVISKCSDLEINRLDKIVLEILRMA 81

Query: 90  VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-RIAGISII 148
             +IL++  ADYAVVD AVE A        +   VN++LR V R  ++           I
Sbjct: 82  TTEILFMKTADYAVVDEAVELASSITR---YKDYVNAVLREVCRINVDSEDLEDDIKFSI 138

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA-------VMLPTG 201
            +   + L   Y K+ V  +  +        +      E                     
Sbjct: 139 NKDLLKMLNKSYSKKTVRKLLKSFFYKSDFVIKQNKLKENNLKINLENQGFALNDHPFLK 198

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
              + E PESI+    F EG + +QD S S+  ++   L N  +LD+CAAPG K+  +  
Sbjct: 199 DSFIVENPESIIDTKEFKEGKFLIQDGSCSLCAEILEPLENSIILDICAAPGSKSCNIQE 258

Query: 262 SGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPC 316
                      D+++ ++ +++ N+++  +     +  DA          FD +LVDAPC
Sbjct: 259 ITNNQSIIYCNDINQNKIARIKENVEKCAVKNVQYMNFDATILQKDLINKFDRILVDAPC 318

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S+TG I ++P++   R   D+      QR++L     ++K GGI+V+S CSL K+++E+ 
Sbjct: 319 SATGVINKNPEIKLFRTKKDVENLVNTQRQILENCEKYLKEGGILVYSTCSLLKEENEKN 378

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           V+  + +             + K  D+        +I++ P           G  GFF  
Sbjct: 379 VE-FIENR-----------LHLKRKDIEFYGDKNEFIKLMP--------FQKGTQGFFIS 418

Query: 437 ALRR 440
              +
Sbjct: 419 KFVK 422


>gi|299068350|emb|CBJ39574.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Ralstonia
           solanacearum CMR15]
          Length = 441

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 163/438 (37%), Gaps = 36/438 (8%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           +R+  +L   +D               +  V+ +     R+L   D ++  ++       
Sbjct: 22  LRQGTALPQAIDAAC-----PGQPGATRGAVQDLAYRATRWLGSADWLIRTLIPRPPAEG 76

Query: 79  KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                 LLRV++AQ+L        + VVD  V  A  D +  H   ++N +LRR  RE+ 
Sbjct: 77  AA---NLLRVALAQLLDTPAPYAPFTVVDQTVRAASADPKLAHAKGMINGVLRRFLREQA 133

Query: 137 ELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186
           +L   +          P W+   +   Y +     ++     P  +       + V+  +
Sbjct: 134 DLTAAMQADPVAAINYPAWWIGAVREAYPEAWQAILAAGNRRPPMVLRVNPGRVPVEAYL 193

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
              A                     +  LPGFAEG   VQDA A +   L        VL
Sbjct: 194 ARLAEAGIEAERIGAQAVRLARAMPVGELPGFAEGDVSVQDAGAQLAAALLDVAPGQRVL 253

Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302
           D CAAPGGKT     +  G  V AL+    R  ++  NL RL   A            + 
Sbjct: 254 DACAAPGGKTGHLLELADGLDVVALESDAARAARIGENLARLGQTATVCVGDAAKPDAWW 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +LVD PCS+ G +RRHPD+ W R   D+   A  QR ++    + +KPGG +V
Sbjct: 314 DGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGKLV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CS+   + E   +         + L           + A    P             
Sbjct: 374 YVTCSIFPTEGEAQARWFESRLQDAIRLHAPGQLLPAMPEAAGGFVP------------G 421

Query: 423 IDGVSSGMDGFFAVALRR 440
           +  +    DGF+    ++
Sbjct: 422 VSSLPLDHDGFYYAVFQK 439


>gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
 gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
          Length = 360

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 165/372 (44%), Gaps = 34/372 (9%)

Query: 93  ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144
           ++YLD V + A +  AVE AKR + ++  A +VN +LR + RE         + ++R+A 
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196
            +  P W  +   + YG E    + +  + P      V  D  T    +         A 
Sbjct: 60  ATSHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEEAIALLASEGIEAK 119

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                   ++    ++     F +G   +QD S+ +  +         VLD CAAPGGKT
Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKT 179

Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310
             +        +V +LD+   ++  ++   +RL L   +   +D     ++   + FD +
Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNVETKALDARKVQEHFANETFDKI 239

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K
Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 299

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++E+V+++ L+  P   E     +   +  +       EG ++I P             
Sbjct: 300 IENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA--------T 348

Query: 431 DGFFAVALRRLI 442
           DGF+   LR+ +
Sbjct: 349 DGFYIACLRKKV 360


>gi|255067827|ref|ZP_05319682.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
           ATCC 29256]
 gi|255047918|gb|EET43382.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
           ATCC 29256]
          Length = 419

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSIAAV-AEGRNLQDVLAQI--RAAHPELTVQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+
Sbjct: 63  LAQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITTALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +            E    +  LPGFAEG+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +   VTALD+ + RL++++ NLDRL      + 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNLDRLGFQTTALA 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDA+L D PC+++G  RR+PDV W R   D  K+A  Q  LL   
Sbjct: 299 CADAQDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +   G ++ + CS+  ++++  +QK L       EL+                    
Sbjct: 359 WQTLTKNGRMLLATCSVFVEENDVQLQKFLNRH-ADAELIESRV---------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIKK 418


>gi|167893188|ref|ZP_02480590.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           7894]
          Length = 420

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 100/446 (22%), Positives = 167/446 (37%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +     + +   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG+  VQD  + +   L        
Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V   L + P   ELVP + A  +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRALAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|34499073|ref|NP_903288.1| sun protein [Chromobacterium violaceum ATCC 12472]
 gi|34104923|gb|AAQ61280.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472]
          Length = 419

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 99/443 (22%), Positives = 167/443 (37%), Gaps = 56/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           ++  + R       +L   + +     L   D+ L+       LR L ++ A++      
Sbjct: 14  VIGQMTRFDRPADAVLSAYFREH--NKLGSADRHLIAETAFGALRRLIQLRALIAP--EK 69

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           + PR         R+++  ++  +  +   +  A    +R+       K +   L     
Sbjct: 70  ATPR---------RLALVALMKFNKLNVKELSEATSAGEREWLGTVKGKALEDSLE---- 116

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  ERL        V A+    +S   +DL V       E   
Sbjct: 117 ----------IRAELPQWVIERLGEQEP-AAVEALGQGLMSMAPLDLRVNTLKMKREELL 165

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
            +LNA  +         L   +   P       F  G + VQD  + +   + G      
Sbjct: 166 DRLNADGIACEATPYSPLGIRLKDKPALSRHELFKSGAFEVQDEGSQLLGLITGARRGEM 225

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI----IEMD 297
           V+D CA  GGKT      + S  ++ A DVS++RL   +    R  L          E D
Sbjct: 226 VVDFCAGAGGKTLLLGAQMASSGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLLSHEND 285

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ + +  D + +    Q  +L      VK 
Sbjct: 286 AKVKRLAGKADRVLVDAPCSGLGTLRRNPDLKFRQSPDSVAELNAKQASILASASRLVKN 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CSL  Q+++ +V+  L        LV ++    +     + L    ++ + P
Sbjct: 346 GGRLVYATCSLLPQENQAIVEAFLAEH-ADFRLVKMDEVLAE---QKIPLQCGDYLELKP 401

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            +           DGFFA  L R
Sbjct: 402 HL--------HNTDGFFAAVLER 416


>gi|261392374|emb|CAX49914.1| putative ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Neisseria
           meningitidis 8013]
          Length = 418

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 167/446 (37%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +   + L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETAFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +   P  +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLKQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N       ++ + L    ++R+
Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCVEL-LQNLKIDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418


>gi|297526431|ref|YP_003668455.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255347|gb|ADI31556.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 449

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 94/458 (20%), Positives = 176/458 (38%), Gaps = 44/458 (9%)

Query: 9   LVSSHLLSCVMRKRI--SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            +   L+  V                +        S+RD  LV A+    ++ L  +D  
Sbjct: 9   EMVLALVEAVRLSERIKPSQDAKRRAFRKYGILG-SKRD-PLVTAVFYGVMKRLGILDLY 66

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR---DKENRHFAKL 123
           +  ++  +       L+  LRV + +I          +        +    K +      
Sbjct: 67  IRSIVGVNPYIIDPWLRAALRV-LLEIKVYRDPSRRTLRYLRGSVAKLLSSKTHPFVGMY 125

Query: 124 VNSILRRVSREKIELLQRIAGI-----SIIPEWFKERLENFYGKERVLAISDACISPLYI 178
              I  ++  E      R          ++P W+  ++    G      +  A    L +
Sbjct: 126 YARIYDKIINENYVFKPRNEDEELLVKYMLPPWYVRKIIGLLGNVEAEKLFKALDKQLPL 185

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG---------FAEGVWWVQDAS 229
            + V          L  +      +R   +  +I+  PG         F +G   +Q+ +
Sbjct: 186 SVRVNTLKTGVEEVLEILRREVKWVRRSSIVSTIIKFPGPYNFDKSDLFRKGYIVIQEEA 245

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A++   +      ++V+D+ AAPGGKT  +   + +   + A DV K+R+++++  L R 
Sbjct: 246 AAVASLILDPKPGMTVVDMAAAPGGKTQHIAELMGNEGVIYAFDVDKKRIDRMQGILRRT 305

Query: 287 HLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            +    I   D+        +K+ D VL+DAPCSS GTI ++PD+ W    + I +    
Sbjct: 306 GVRIAKIYREDSRKAPEILGEKIADRVLLDAPCSSDGTIMKNPDLRWRLREEKIAELQKL 365

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L  G   +KPGG +++  CS+  +++E +++K LR      E++PLN  Y      
Sbjct: 366 QYEMLEAGWKLLKPGGKLLYCTCSMLLEENEHIIEKFLRKH-RDAEIIPLNKPYDPGFLP 424

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  G +R  P              GFF   L++ 
Sbjct: 425 -------GTMRAWPH--------RHETIGFFYALLKKK 447


>gi|53718550|ref|YP_107536.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
 gi|76809740|ref|YP_332539.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei 1710b]
 gi|126438608|ref|YP_001058021.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           668]
 gi|126454034|ref|YP_001065255.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           1106a]
 gi|167718457|ref|ZP_02401693.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           DM98]
 gi|167814625|ref|ZP_02446305.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           91]
 gi|167823095|ref|ZP_02454566.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           9]
 gi|167844657|ref|ZP_02470165.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           B7210]
 gi|167901641|ref|ZP_02488846.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           NCTC 13177]
 gi|167909890|ref|ZP_02496981.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           112]
 gi|217420015|ref|ZP_03451521.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei 576]
 gi|226194442|ref|ZP_03790040.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811172|ref|YP_002895623.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           MSHR346]
 gi|242317852|ref|ZP_04816868.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei 1106b]
 gi|254181494|ref|ZP_04888091.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           1655]
 gi|254190881|ref|ZP_04897388.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196467|ref|ZP_04902891.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           S13]
 gi|254261593|ref|ZP_04952647.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei 1710a]
 gi|52208964|emb|CAH34903.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
 gi|76579193|gb|ABA48668.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei 1710b]
 gi|126218101|gb|ABN81607.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei 668]
 gi|126227676|gb|ABN91216.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei 1106a]
 gi|157938556|gb|EDO94226.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653210|gb|EDS85903.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           S13]
 gi|184212032|gb|EDU09075.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           1655]
 gi|217397319|gb|EEC37335.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei 576]
 gi|225933527|gb|EEH29516.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei Pakistan 9]
 gi|237506284|gb|ACQ98602.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           MSHR346]
 gi|242141091|gb|EES27493.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei 1106b]
 gi|254220282|gb|EET09666.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia pseudomallei 1710a]
          Length = 420

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 99/446 (22%), Positives = 166/446 (37%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +     + +   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG+  VQD  + +   L        
Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V   L + P   ELVP +    +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRVLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|134281167|ref|ZP_01767876.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           305]
 gi|134247473|gb|EBA47558.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           305]
          Length = 420

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 99/446 (22%), Positives = 166/446 (37%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +     + +   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPASLDLRANALKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG+  VQD  + +   L        
Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V   L + P   ELVP +    +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRVLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
 gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
           6E1]
 gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
           6E1]
 gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
 gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 360

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 164/372 (44%), Gaps = 34/372 (9%)

Query: 93  ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144
           ++YLD V + A +  AVE AKR + ++  A +VN +LR + RE         + ++R+A 
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196
            +  P W  +     YG E    + +  + P      V  D  T    +         A 
Sbjct: 60  ATSHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDKITVEEAITLLASEGIEAK 119

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                   ++    ++     F +G   +QD S+ +  +         +LD CAAPGGKT
Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKT 179

Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310
             +        +V +LD+   ++  ++   +RL L   +   +D     ++   + FD +
Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKI 239

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K
Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQGGRLVYSTCTIEK 299

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++E+V+++ L+  P   E     +   +  +       EG ++I P             
Sbjct: 300 IENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA--------T 348

Query: 431 DGFFAVALRRLI 442
           DGF+   LR+ +
Sbjct: 349 DGFYIACLRKKV 360


>gi|295396524|ref|ZP_06806684.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970642|gb|EFG46557.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 494

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 96/469 (20%), Positives = 163/469 (34%), Gaps = 41/469 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   N R+++  +L  V         LL  +   +    +S  D  +   +   TLR   
Sbjct: 36  RPKANPRVIAWEVLRDVDLNDAYANLLLPAKLERTR---MSGPDAAMCTEMTYGTLRARR 92

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR--- 118
             DAV++ V    + + + ++   +R+   Q+L + VAD+A V   V    ++ + +   
Sbjct: 93  FYDAVIEKVSDRPVDQIEAAVLNAMRLGAHQVLAMRVADHAAVSETVGVISKNADTKIAN 152

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGI-----------SIIPEWFKERLENF-----YGK 162
             A  VN++LRR++ +  E                   +  P W    L           
Sbjct: 153 RAAGFVNAVLRRITEKSREEWLEELCEGLSDDERLEITTSHPAWIIRSLRQALVANGRNA 212

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           E +  + +A  +P  + L+V         + +        I +         +   A G 
Sbjct: 213 EELTQLLEAHNTPARVCLSVLDGTRDQVAQKHGEPTELSPIGVTLTHGDPAHVDAVAAGR 272

Query: 223 WWVQDASAS-----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277
             VQD  +      +             LDLCA PGGKT+ L           V      
Sbjct: 273 ARVQDEGSQLVALALVEAEASEDPADPWLDLCAGPGGKTSVLAAHAGTKRVDAVDASAHR 332

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
                           +  D  D+       +  VLVD PCS  G +RR P+  W R   
Sbjct: 333 TELVKDSTRAFDNVQAVNEDGRDFAQANPQTYTRVLVDVPCSGLGALRRRPEARWRRQPS 392

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           DI      QR LL   I   K GG++ ++ CS    ++  VV+ +++  P+ V   P   
Sbjct: 393 DIGALGGVQRDLLRTAIEATKSGGVIAYTTCSPHVAETLMVVEDIVKKQPVTVMDAPEVL 452

Query: 396 AYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           A           S        +++ P +           DG F   L++
Sbjct: 453 AQLTGKPAETFESATVASGRVVQLWPHI--------HATDGMFLALLKK 493


>gi|225075469|ref|ZP_03718668.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
           NRL30031/H210]
 gi|224953188|gb|EEG34397.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
           NRL30031/H210]
          Length = 419

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSVAAV-AEGRNLQDVLAEIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    + F    N+
Sbjct: 63  LGQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L N Y K     I+ A  S   + L V
Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPVWWVAYLRNHYPKHW-HNITTALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +P         + E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIPARALDEYAVMLEEAMPVSRLPGFSDGLVSVQDFGAQRAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +   VTALD+ + RL +++ NLDRL      + 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQKASLA 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDAVL D PC+++G  RR+PDV W R   D VK+A  Q  LL   
Sbjct: 299 CADAQDLTAWYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +   G ++ + CS+  ++++  +QK L       EL+  +                 
Sbjct: 359 WQTLTKNGRMLLATCSVFVEENDGQLQKFLNRH-ADAELIESHV---------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIKK 418


>gi|57642239|ref|YP_184717.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
           [Thermococcus kodakarensis KOD1]
 gi|57160563|dbj|BAD86493.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
           N-terminal NusB regulator domain [Thermococcus
           kodakarensis KOD1]
          Length = 450

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 184/455 (40%), Gaps = 38/455 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            V +  L  V  + +S    L+  +   A R   +  + L  A V    ++  +ID +++
Sbjct: 11  EVVADALMLVEERELSSKHALERVFKKVAGRDREKA-RGLAHAYVFEIEKWRAKIDFIIN 69

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL  S +      L  LLR+   +I +  V      D  V   K  K +   AK VN++
Sbjct: 70  SVLKGSKVEDLDPYLANLLRIGTFEIHFRKVPPALATDSIVRVVKE-KFDFSRAKFVNAL 128

Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +  + +             + ++ ++     P W+ E + N +G +  + +  +   P  
Sbjct: 129 MHEIEKFDVERALKRLKEKDRIEWLSVRFSHPRWYVEYVINLFGYDEAVRLLLSNNRPQR 188

Query: 178 IDLTVKF------DIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             +           +  +  +     A+      +++ E    +  L  + EG + +QD 
Sbjct: 189 YYVRANTLKTDIDSLRDYLEENGVRTALTPVPDVLKVLEYKTPVTRLDWYKEGKFVIQDL 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           +++    +        +LDL AAPG KT      + +  ++ A+D S  RL +++     
Sbjct: 249 ASAYVAHVLSPEPGERLLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMRMKEKAKV 308

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L +     +  D   +  K+ FD +++DAPCSS+GT R+ P+V W  D   I K    QR
Sbjct: 309 LGVKNVRFVHADGQSFRDKEKFDKIILDAPCSSSGTYRQFPEVKWRFDEAKIKKIISVQR 368

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      ++ GG + +S CS+   + EE V            L  +N    + +D   
Sbjct: 369 NMLRNAYENLREGGEMTYSTCSIRIDEDEENV------------LFAINRVGLELLDYPF 416

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +    G++ I  D + +        + FF   L+R
Sbjct: 417 SWGDRGFLDI-GDKVFRAWTHRHDCNSFFIAKLKR 450


>gi|114332240|ref|YP_748462.1| Fmu (Sun) domain-containing protein [Nitrosomonas eutropha C91]
 gi|114309254|gb|ABI60497.1| Fmu (Sun) domain protein [Nitrosomonas eutropha C91]
          Length = 424

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 155/442 (35%), Gaps = 55/442 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            +  V+  +     LL   + D  +  L Q  + ++   V   LR    ++ +       
Sbjct: 14  AVRKVLPLQAPADVLLRQFFRD--YPQLGQNGRSMIAETVFGILRHRFFLEVLTGKATAR 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            L            V      +  +    +  L  E   +                +  +
Sbjct: 72  EL------------VLAYLARFQGMNLRELTPLIREVESKWI--------------QQIK 105

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
                 Q     +  PEW   +L+  +  E +L +      P  +D+ V       E   
Sbjct: 106 AVKLEEQPQFIRAEFPEWLVGKLQQSWSDEDILRLGQVLQQPAPLDIRVNSLLAKREEVI 165

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +         +   +   P       F  G   VQD  + I   L        
Sbjct: 166 AVLKQEGIEAQSTPFSPVGIRLTGNPAINRNALFLSGKIEVQDEGSQILGFLLAPKRGEM 225

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CA  GGKT     L+ S  ++ A D+S++RL  L+  L R  L       +D+   
Sbjct: 226 VVDFCAGAGGKTLLLGALMHSRGRLYAFDISEKRLNNLKPRLKRSGLSNVHPQHIDSEKD 285

Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D VLVDAPCS  GT+RR+PD+ W +  + I +    Q  +L      +KP
Sbjct: 286 IKLKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESINELQKKQIAILTAAAKLLKP 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CSL  +++++V+++ L   P    L        + I++              
Sbjct: 346 GGRLVYATCSLLPEENQQVIERFLADHPQFSILNCGELLAQQKINLPDT----------- 394

Query: 418 DMLEKIDGVSSGMDGFFAVALR 439
               ++  +    DGFFA  L 
Sbjct: 395 GEFLQLSPLYHNTDGFFAAVLE 416


>gi|288918235|ref|ZP_06412590.1| Fmu (Sun) domain protein [Frankia sp. EUN1f]
 gi|288350405|gb|EFC84627.1| Fmu (Sun) domain protein [Frankia sp. EUN1f]
          Length = 501

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 99/497 (19%), Positives = 159/497 (31%), Gaps = 74/497 (14%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARL++  +L  V  +      +L         R LS RD+     +   +LR    +D 
Sbjct: 14  PARLLAWEVLRAVDERGAYANLMLPALLNR---RRLSPRDRGFATELTYGSLRAQGTLDG 70

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF----- 120
           VL  V    +      ++  LR+   Q+L   V   A V   VE  +     R       
Sbjct: 71  VLGTVTSRPVDTVDPPVRDALRLGTYQLLSTRVPARAAVASTVELVRATCGERPVRFANA 130

Query: 121 -----------AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE--RVLA 167
                           ++L       ++ +  ++ +S  P W  E +      +     A
Sbjct: 131 VLRRVAARVEETAGDVAVLLSAPDVSVDPVGHLSVVSAHPRWIVEVVLEALDGDVAGAQA 190

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLP--------TGGIRLKELPESIVSLPGFA 219
              A      + L  +         +                   +        +L    
Sbjct: 191 ALAANDERPGVHLVARPGRIGADELVAQAAAAGLQAHRGACSPYAVHLDGGDPGALTAVV 250

Query: 220 EGVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTA------ 268
            G   VQD  + +       +  +       +DLCA PGGK A L    A   +      
Sbjct: 251 AGDAAVQDEGSQLMALALAAVPMVGRSSGLTVDLCAGPGGKAALLAAVLATEQSPGAGLL 310

Query: 269 ------------------------LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-P 303
                                   L +  R               A  ++  D       
Sbjct: 311 PGGGPPAGAAESLPGGGAAAGARLLALEPRAARAGLVAASLAGFPAAHVVRADGRVPPVR 370

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
               D VLVD PCS  G +RR P+  W R   DI   A  QR+LL+  +  V+PGG+V +
Sbjct: 371 PGTADRVLVDVPCSGLGALRRRPEARWRRTPADIAVLAPLQRQLLVSALDLVRPGGVVAY 430

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
             CS  ++++ EVV  V+      V L    S  +  +  A +L    ++++ P +    
Sbjct: 431 VTCSPHREETSEVVSAVVGQRADVVTLDARRSPIFADLP-ADSLGSGPFVQLWPHL---- 485

Query: 424 DGVSSGMDGFFAVALRR 440
                G D  F   LRR
Sbjct: 486 ----HGTDAMFLALLRR 498


>gi|17544794|ref|NP_518196.1| RNA methyltransferase (SUN protein) [Ralstonia solanacearum
           GMI1000]
 gi|17427083|emb|CAD13603.1| putative rna methyltransferase (sun protein) [Ralstonia
           solanacearum GMI1000]
          Length = 441

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 163/438 (37%), Gaps = 36/438 (8%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           +R+  +L   +D               +  V+ +     R+L   D ++  ++       
Sbjct: 22  LRQGTALPQAIDAAC-----PGQPGATRGAVQDLAYRATRWLGSADWLIRTLIPRPPAEG 76

Query: 79  KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                 LLRV++AQ+L        + VVD  V  A  D +  H   ++N +LRR  RE+ 
Sbjct: 77  AA---NLLRVALAQLLDTPQPYAPFTVVDQTVRAASADPKLAHAKGMINGVLRRFLREQA 133

Query: 137 ELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186
           +L   +          P W+   +   Y +     ++     P  +       + V+  +
Sbjct: 134 DLTAAMQADPVAAINYPAWWIGAVREAYPEAWQAILAAGNRRPPMVLRVNPSRVPVEAYL 193

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
              A                     +  LPGFAEG   VQDA A +   L        VL
Sbjct: 194 ARLAEVGIEAERIGAQAVRLARAMPVGDLPGFAEGDVSVQDAGAQLAAALLDVAPGQRVL 253

Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302
           D CAAPGGKT     +  G  V AL+    R  ++  NL RL   A            + 
Sbjct: 254 DACAAPGGKTGHLLELADGLDVVALESDAARAARIGENLARLGQTATVCVGDAAKPDAWW 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +LVD PCS+ G +RRHPD+ W R   D+   A  QR ++    + +KPGG +V
Sbjct: 314 DGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGKLV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CS+   + E   +         + L           + A    P             
Sbjct: 374 YVTCSIFPTEGEAQARWFESRLQDAIRLHAPGQLLPAMPEAAGGFVP------------G 421

Query: 423 IDGVSSGMDGFFAVALRR 440
           +  +    DGF+    ++
Sbjct: 422 VSSLPLDHDGFYYAVFQK 439


>gi|299133664|ref|ZP_07026858.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2]
 gi|298591500|gb|EFI51701.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2]
          Length = 433

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 154/459 (33%), Gaps = 47/459 (10%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L  +   R      L        F      D+  +  +V  TLR 
Sbjct: 1   MTP--AARLSAAIEVLEAIDTNRSPAQSALKEWGTAHRFAG--SGDRAAIAGLVFDTLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 V+D             L   LR+   +   LD    A +      A        
Sbjct: 57  RASGAYVMDEDTPRG------RLLGALRL---E-RGLDTDAIAALCSGERFAPAPLSEAE 106

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            + L    L                    PEW    L   +G +RV     A  S   +D
Sbjct: 107 RSALDTRTLDNAPP---------DIAGDYPEWLDSHLAEAFGDDRVREA-AAMASRAPLD 156

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227
           L V          L A+                           + +   F +G   VQD
Sbjct: 157 LRVNTLRSKPEKALAALSHLGAQPTPWSPLGLRIVLGADARNPGVHAEEVFIKGGVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +            V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAALFAQAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDRDKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  ++      +      K   D V+VDAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGIHNAEVRGPKGAENPLSDIKATADLVVVDAPCTGTGTWRRNPDAKWRMRPGALEVRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L +  + VKPGG + +  CS+  Q++   +            +VP         
Sbjct: 337 KDQAEVLERAAALVKPGGRIAYITCSVLPQENGGQIAAFTARH-GDFAVVPPAEVIGALG 395

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           D A A      +R +P  L  +  + +G DGFF   LR+
Sbjct: 396 DRAEAFGKA--VRSSPQGLL-MTPLRTGTDGFFVSILRK 431


>gi|261380548|ref|ZP_05985121.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
           NJ9703]
 gi|284796516|gb|EFC51863.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
           NJ9703]
          Length = 419

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 6   AQKLAADSVAAV-AEGCNLQDVLAEIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKYM 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    + F    N+
Sbjct: 63  LGQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 119

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITTALQSHPPMTLRV 178

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +          + E    +  LPGF++G+  VQD  A     
Sbjct: 179 NRRHGNAESYLEKLAAEGIAARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGAQRAAY 238

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +   VTALD+ + RL +++ NLDRL      + 
Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQKASLT 298

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDAVL D PC+++G  RR+PDV W R   D VK+A  Q  LL   
Sbjct: 299 CADAQDLAAWYDGKTFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDAL 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +   G ++ + CS+  ++++  +QK L       EL+  +                 
Sbjct: 359 WQTLTKNGRMLLATCSVFVEENDGQLQKFLNRH-ADAELIESHV---------------- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 402 ---LLPNKHQ---------DGFYYALIKK 418


>gi|256392286|ref|YP_003113850.1| Fmu (Sun) domain-containing protein [Catenulispora acidiphila DSM
           44928]
 gi|256358512|gb|ACU72009.1| Fmu (Sun) domain protein [Catenulispora acidiphila DSM 44928]
          Length = 493

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/509 (20%), Positives = 173/509 (33%), Gaps = 86/509 (16%)

Query: 1   MKSGM------NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54
           M           AR  +  +L  V  +         L       R LS RD      +  
Sbjct: 1   MAPRTSTSTADQARAAALEVLEAVRTRDAYANL---LLPRLLRDRGLSGRDAAFTTELSY 57

Query: 55  VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
            TLR L   DA++   +   L      +   LR+   Q+L +DV  +A V   V+  +  
Sbjct: 58  GTLRGLGTYDAIIAACVDRDLDAVDPVVLDALRIGAHQLLAMDVPPHAAVSTTVDLVRSV 117

Query: 115 KENRHFAKLVNSILRRVSREKIELLQRI-------------AGISIIPEWFKERLEN--- 158
             N   ++  N+ILRRV +  ++   +              +     P W      +   
Sbjct: 118 -SNEGASRFANAILRRVGQGDLQEWIKRIAPNAQDDPEGFLSVSRSHPRWIVSAFWDSLQ 176

Query: 159 -----FYGKERVLAISDACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPES 211
                    + +  + DA  +   + L  +  +        L A+               
Sbjct: 177 AHRGAQRAHQDIGELLDADNARPGVTLVTRPGLAQVGELTDLGALAARYSPYAAYLAGGD 236

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIV----SG 263
             +L    +G   VQD  + +             +   LD+CA PGGK A L       G
Sbjct: 237 PGALAPVRDGRAGVQDEGSQLVATALALAPLEGRDEQWLDMCAGPGGKAALLAGLALERG 296

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAE-------------------------------D 292
           A + A +++  R E +R  L                                        
Sbjct: 297 ASLLANEIAPHRAELVRRALRGYGDRVVGTADTHTAEVDENADADTDTDATDAVRTGSLQ 356

Query: 293 IIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +I  D          FD V++DAPC+  G +RR P+  W R  +D+ +    QR+LL   
Sbjct: 357 VIAADGIRAPWQPGSFDRVMLDAPCTGLGALRRRPESRWRRTPEDLERLTRVQRRLLSSA 416

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           +  V+ GG+V +  CS   +++ +VV++V+++    VE V          D+        
Sbjct: 417 LDSVRTGGLVAYVTCSPHLEETRDVVRQVVKARR-DVERVDARPLLPGVPDLGGGPD--- 472

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +++ P +         G D  +   LRR
Sbjct: 473 -VQLWPHL--------HGTDAMYLALLRR 492


>gi|119900274|ref|YP_935487.1| Sun protein [Azoarcus sp. BH72]
 gi|119672687|emb|CAL96601.1| Sun protein [Azoarcus sp. BH72]
          Length = 426

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/446 (25%), Positives = 184/446 (41%), Gaps = 47/446 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ L+  V+    +LT   +    D          +  VR +   TLR   R D VLD +
Sbjct: 14  AAELVGTVLEGG-NLTAAFEARLADHPAW--PDATRGAVRDLAWSTLREYGRGDVVLDRL 70

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           L S  P     +  LL V++ ++       + VVD AV  A           +VN +LR 
Sbjct: 71  LKSPPP---AYIHALLLVALHRLEQRPEQAHTVVDQAVSAAAAAM--PGLKGMVNGVLRN 125

Query: 131 VSREKIELLQRIAG----ISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTVKFD 185
             R+  E+    +         P W+  RL   +      +A +     P+ + +  +  
Sbjct: 126 SLRQHEEVAAWRSASEVARMRHPAWWIARLRRQWPDAWPAVAAAGNLPPPMALRVNRRTA 185

Query: 186 I-----ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                    A              L E+P ++V LPGFAEG   VQDA A    +L    
Sbjct: 186 RRDDVLAELASAGIGARPCDEDGVLLEVPCAVVRLPGFAEGRVSVQDAGAQYAARLLDPH 245

Query: 241 NNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           +   VLD CAAPGGK A L   +  ++ AL+++  R  ++  NL RL L A  +   D  
Sbjct: 246 DGDRVLDACAAPGGKAAHLLERADVQLLALELAPERAARIGANLQRLGLEA-SVKVGDCR 304

Query: 300 ---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
               +     FD +L D PCS++G +RRHPD+ W R  +DI   A  Q ++L      ++
Sbjct: 305 AVDSWWDGTPFDRILADVPCSASGVVRRHPDIKWLRRDEDIAGFAAQQAEILDALWRTLR 364

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG ++++ CS+ ++++   V   L      + +               ++  +  + + 
Sbjct: 365 PGGTMLYATCSVFEEENAGQVAAFLARHADALSV---------------SIDGQPHLCLL 409

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           PD            DGFF   LR+  
Sbjct: 410 PDA---------DHDGFFYALLRKAA 426


>gi|226938995|ref|YP_002794066.1| sun protein [Laribacter hongkongensis HLHK9]
 gi|226713919|gb|ACO73057.1| sun protein [Laribacter hongkongensis HLHK9]
          Length = 412

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 183/446 (41%), Gaps = 54/446 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           L+++ +L   +    +LT ++  E             +  +  + + +LR   R+   LD
Sbjct: 6   LLAARILDATL-SGHNLTDVMSSEAAHITGDR-----RAQLLDLTHGSLRRYGRLRVKLD 59

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +L   L      + +LL V++ Q+     A YA+VD AV  A           LVN++L
Sbjct: 60  HLLERPLT--DPVVDRLLIVALYQLEATRAAPYAIVDHAVRAASE--AAPRLKGLVNAVL 115

Query: 129 RRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           R   R + EL     +        PEW+   +   Y ++    +  A      + L V  
Sbjct: 116 RNAQRRQDELEQLLQRDTVAHWNHPEWWIAAVRRAYPRDWKAVLG-ASNQHPPMTLRVNT 174

Query: 185 DIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDASASIPVQLF 237
                A  LN +        L E        P  +  LPGF EG+  VQDA A +   L 
Sbjct: 175 RRVEPAEYLNELASHGHAATLLEDAAIKLVSPCPVSQLPGFFEGLCSVQDAGAQLATGLL 234

Query: 238 GTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDII 294
              + + VLD CAAPGGKT  L       +TALD   RRL ++  NL+RL L+A      
Sbjct: 235 DVADGMRVLDACAAPGGKTGHLLEARTLDLTALDADARRLARVSQNLERLGLHARVVRGD 294

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                 +   + FD +L D PCS++G +RRHPD+ WTR + D+ + A  QR++       
Sbjct: 295 AATPAAWWDGRPFDRILADVPCSASGVVRRHPDIKWTRRSSDLNQFAQTQRRIADALWPL 354

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V  GG ++++ CS+   ++ E +   L                            E  ++
Sbjct: 355 VASGGKMLYATCSIFPTENREQIDAFLARHADAAL--------------------ERDLQ 394

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + PD            DGF+   L R
Sbjct: 395 LVPDDT---------HDGFYYAVLVR 411


>gi|197124464|ref|YP_002136415.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K]
 gi|196174313|gb|ACG75286.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K]
          Length = 455

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 122/458 (26%), Positives = 177/458 (38%), Gaps = 44/458 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V       +    L+    A   L  R+  L   +V  TLR    +DA 
Sbjct: 12  ARGIAFDVLRRVEEGGAYASR--ALDAALGAAGALDPREAGLATELVYGTLRRALALDAA 69

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L       L     + +  LR+   Q+L L    +A V   V  AK     R  A  VN+
Sbjct: 70  LAPHSRRPLAELDPAARVALRLGAYQLLVLGTPAHAAVGETVALAKAVDHGR-AAGYVNA 128

Query: 127 ILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +LR +SR                 +A    +P W  E    + G    LA++ A  +P  
Sbjct: 129 VLRSLSRAARFPDPPALEADPAGHVAAAEALPRWVAEEWVGWLGAGEALALARAMNAPAP 188

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLP----GFAEGVWWVQDA 228
           + +    D E    +  A  L                 S+  L     G    V      
Sbjct: 189 LCVR-TPDREALLARARAAGLAAAPAARAPGGVVLTGASVGELARAAGGVPFQVQDEAAQ 247

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285
             ++            VLD CAAPGGK   L      GA+V A+++  R+ ++L     R
Sbjct: 248 LVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAIELHPRKADELAREAAR 307

Query: 286 LHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             L A  ++  DA    P      FDAVLVDAPC+  GT+RRHP++   R   D+ + A 
Sbjct: 308 RGLAAVRVVCADAGKPIPGLEPGSFDAVLVDAPCAGLGTLRRHPELKLRRAPGDLPRMAA 367

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QRK+ L    + +PG  VV+S CSL + +  EVV+ +L          P  + +     
Sbjct: 368 LQRKIALNAARYARPGAPVVYSICSLSRAEGPEVVETLL---GEGFRRAPPPAGFP---- 420

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A  L   G +   P           G DGF+A  L R
Sbjct: 421 -ADVLDARGDLLTLPS--------RHGTDGFYAARLVR 449


>gi|218768368|ref|YP_002342880.1| SUN-family protein [Neisseria meningitidis Z2491]
 gi|121052376|emb|CAM08708.1| SUN-family protein [Neisseria meningitidis Z2491]
 gi|319410614|emb|CBY90983.1| putative ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) [Neisseria
           meningitidis WUE 2594]
          Length = 418

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 167/446 (37%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +   + L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETAFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNVHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + + K    Q  +L      V
Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKVDLHTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418


>gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
           BDRD-ST26]
 gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
           BDRD-ST26]
          Length = 360

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 165/372 (44%), Gaps = 34/372 (9%)

Query: 93  ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144
           ++YLD V + A +  AVE AKR + ++  A +VN +LR + RE         + ++R+A 
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA--------HKLNAV 196
            +  P W  +   + YG E    + +  + P      V  D  T            + A 
Sbjct: 60  ATSHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEGAIALLASEGIEAK 119

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                   ++    ++     F +G   +QD S+ +  +         VLD CAAPGGKT
Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKT 179

Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310
             +        +V +LD+   ++  ++   +RL L   +   +D     ++   + FD +
Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNVETKALDARKVQEHFANETFDKI 239

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K
Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 299

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++E+V+++ L+  P   E     +   +  +       EG ++I P             
Sbjct: 300 IENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA--------T 348

Query: 431 DGFFAVALRRLI 442
           DGF+   LR+ +
Sbjct: 349 DGFYIACLRKKV 360


>gi|83719688|ref|YP_441329.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis E264]
 gi|167618178|ref|ZP_02386809.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis Bt4]
 gi|257139997|ref|ZP_05588259.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis E264]
 gi|83653513|gb|ABC37576.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis E264]
          Length = 420

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 101/446 (22%), Positives = 167/446 (37%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLADVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R       L+ + +     +     + V   V  A+    +        S+  RV  
Sbjct: 72  PARR-------LVLLGL-----MQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKATRDEVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V + L + P    LVP +    +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSEFLAAHP-EFALVPASRVLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|53726232|ref|YP_103803.1| NOL1/NOP2/sun family protein [Burkholderia mallei ATCC 23344]
 gi|67641262|ref|ZP_00440044.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia mallei GB8 horse 4]
 gi|121598599|ref|YP_993952.1| rRNA small subunit methyltransferase B [Burkholderia mallei SAVP1]
 gi|124385695|ref|YP_001027017.1| rRNA small subunit methyltransferase B [Burkholderia mallei NCTC
           10229]
 gi|126449006|ref|YP_001081640.1| rRNA small subunit methyltransferase B [Burkholderia mallei NCTC
           10247]
 gi|166998903|ref|ZP_02264755.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia mallei PRL-20]
 gi|254175548|ref|ZP_04882208.1| rRNA small subunit methyltransferase B [Burkholderia mallei ATCC
           10399]
 gi|254202506|ref|ZP_04908869.1| rRNA small subunit methyltransferase B [Burkholderia mallei FMH]
 gi|254207841|ref|ZP_04914191.1| rRNA small subunit methyltransferase B [Burkholderia mallei JHU]
 gi|254356264|ref|ZP_04972540.1| rRNA small subunit methyltransferase B [Burkholderia mallei
           2002721280]
 gi|52429655|gb|AAU50248.1| NOL1/NOP2/sun family protein [Burkholderia mallei ATCC 23344]
 gi|121227409|gb|ABM49927.1| rRNA small subunit methyltransferase B [Burkholderia mallei SAVP1]
 gi|124293715|gb|ABN02984.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia mallei NCTC 10229]
 gi|126241876|gb|ABO04969.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia mallei NCTC 10247]
 gi|147746753|gb|EDK53830.1| rRNA small subunit methyltransferase B [Burkholderia mallei FMH]
 gi|147751735|gb|EDK58802.1| rRNA small subunit methyltransferase B [Burkholderia mallei JHU]
 gi|148025261|gb|EDK83415.1| rRNA small subunit methyltransferase B [Burkholderia mallei
           2002721280]
 gi|160696592|gb|EDP86562.1| rRNA small subunit methyltransferase B [Burkholderia mallei ATCC
           10399]
 gi|238522161|gb|EEP85607.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia mallei GB8 horse 4]
 gi|243064983|gb|EES47169.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia mallei PRL-20]
          Length = 420

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 100/446 (22%), Positives = 167/446 (37%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +     + +   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +V  P       F EG+  VQD  + +   L        
Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALAKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V   L + P   ELVP +    +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRVLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|330818069|ref|YP_004361774.1| NOL1/NOP2/sun family protein [Burkholderia gladioli BSR3]
 gi|327370462|gb|AEA61818.1| NOL1/NOP2/sun family protein [Burkholderia gladioli BSR3]
          Length = 464

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/443 (23%), Positives = 168/443 (37%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL  V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLGDVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGT 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +  A  + +   V +A+    +        S+  RV  
Sbjct: 72  PARRLT-------LLGL-----MQTAGRSALKPHVSEAEWSWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
                       + +P+W  + L   +  + +   + A   P  +DL V       +   
Sbjct: 118 -----------RTNLPDWIHQALSQRFDADGLAQFAAAVNYPAPLDLRVNVQKATRDQVL 166

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          ++  P       F +G+  VQD  + +   L        
Sbjct: 167 DALKASGIEAGETPFAPNGVRVIGKPALTKLSIFQDGLIEVQDEGSQLLCSLMAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT      + S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  D I + A  Q  +L      VKP
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRDSIEELAPKQGSILASAARLVKP 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V + L + P    LVP N    +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVVQFLAAHP-DFVLVPANKVLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|207727563|ref|YP_002255957.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2]
 gi|206590800|emb|CAQ56412.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2]
          Length = 418

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 103/411 (25%), Positives = 159/411 (38%), Gaps = 29/411 (7%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVA--DYAV 103
           +  V+ +   T R+L   D ++  ++             LLRV++AQ+L        + V
Sbjct: 19  RGAVQDLAYRTTRWLGSADWLIRTLIPRPPAEGTA---NLLRVALAQLLDTPPPYAPFTV 75

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGIS----IIPEWFKERLENF 159
           VD AV  A  D +  H   +VN +LRR  RE+ +L+  +          P W+   +   
Sbjct: 76  VDQAVRAASADPKLAHAKGMVNGVLRRFLREQGDLVAAMQADPVAATNYPVWWINAVREA 135

Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           Y +     ++     P  +       + V   +   A                     + 
Sbjct: 136 YPEVWQAILAAGNRRPPMVLRVNPRRVPVDAYLARLAEGGIEAERIGAQAVRLARAVPVG 195

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDV 271
            LPGFAEG   VQDA A +   L        VLD CAAPGGKT     +  G  + AL+ 
Sbjct: 196 DLPGFAEGDVSVQDAGAQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDLVALES 255

Query: 272 SKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
              R E++  NL RL   A            +   + FD +LVD PCS+ G +RRHPD+ 
Sbjct: 256 DGARAERIGENLARLGQIATVCVGDAAKPDAWWDGRPFDRILVDVPCSAAGIVRRHPDIR 315

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W R   D+   A  QR ++    + +KPGG +V+  CS+   + E  V+         + 
Sbjct: 316 WLRRPADLPALAVLQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQVRWFESRLQDAIR 375

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L           + A        +   P             DGF+    ++
Sbjct: 376 LHAPGQLLPAMPEAAPVGGFVPGVSSLP----------LDHDGFYYAVFQK 416


>gi|91789649|ref|YP_550601.1| Fmu (Sun) [Polaromonas sp. JS666]
 gi|91698874|gb|ABE45703.1| Fmu (Sun) [Polaromonas sp. JS666]
          Length = 417

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 155/450 (34%), Gaps = 65/450 (14%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  V++       ++   + +     L  R++  V   +   LR      A L     
Sbjct: 12  ELLKQVLKFEHPADMVVSRYFREMR---LGPRERATVAETIYGVLRKKNLY-AYLAQHGS 67

Query: 73  SSLPRKKYSL-----QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
               R+   L     +  L  ++ +                  A+               
Sbjct: 68  GPPERRLAILGFAAERDFLLSALTE------------QEKDWLAR--------------- 100

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
                 +             +P+W  E L+   G +    + ++  +P  +DL V    E
Sbjct: 101 ----CDQVKPSDLMELHRHNLPQWLVEPLKAQLGDDFW-PLVESLNAPAGLDLRVNTLKE 155

Query: 188 TWAHKLNAVMLP--------TGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFG 238
             A     +                L+ + +  +  L  F  G   VQD  + +   L  
Sbjct: 156 KRAEVQKELGKHAIKTVATPYSPWGLRLVDKPQLGKLDAFTRGAIEVQDEGSQLLALLLD 215

Query: 239 TLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED--- 292
                 V+D CA  GGK       + +  ++ A D S  RL+ L+  L R  L       
Sbjct: 216 AKRGEMVVDFCAGAGGKTLAIGATMRNTGRLYAFDTSGHRLDALKPRLARSGLSNVHPVA 275

Query: 293 -IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
              E D          D VLVDAPCS  GT+RR+PD+ W ++   I +    Q  +L   
Sbjct: 276 IAHERDDRIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQNPKAIEELTAKQAAILQSA 335

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +KPGG +V++ CS+ ++++E + +    ++     L          ++ A  L    
Sbjct: 336 ARLLKPGGRLVYATCSILREENEAIAEAFSAANKEFNALEVAPLLTHLGVEGAERLCRGP 395

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++R+ P             DGFFA   ++L
Sbjct: 396 YLRLWP--------YLHQTDGFFAAVWQKL 417


>gi|298368970|ref|ZP_06980288.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282973|gb|EFI24460.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 418

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 163/445 (36%), Gaps = 53/445 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +  VL
Sbjct: 10  AKVLAEMLTFKQPADAVLSGYFREHK--KLGRQDRHKIAETAFAALRHYQK----ISTVL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLSSL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + KE +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDDLHTAAELPQWLVEQLQKHFSKEEILAFGRSTNQAAPLDIRVNTLKGRRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + + K    Q  +L      V
Sbjct: 285 HDSRIARLTGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETVAKLLEQQHSILDAAAKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P    L          ID+        ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENEMQVERFLEEHPEYELLDCAELLAGLKIDLNTG----KYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                   D      DGFFA  L+R
Sbjct: 401 --------DSAKHQTDGFFAAVLQR 417


>gi|315231384|ref|YP_004071820.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
 gi|315184412|gb|ADT84597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
          Length = 451

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 188/454 (41%), Gaps = 36/454 (7%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            + + +L+ +  + +S    L+  +   + +   +  + L  A V    ++  +ID +++
Sbjct: 11  ELIADILTLIDERELSSKNALERVFKRVSGKDREKA-RGLAHAYVFEIEKWRKKIDFIVN 69

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120
            VL  S +   +  L  L+R+ V ++ +  V           VV    + AK    N   
Sbjct: 70  SVLKGSKIEDLELYLANLIRIGVFEMKFKGVNPAIATDSVVRVVKEKYDLAKAKFVNALL 129

Query: 121 AKL--VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            ++   N        ++ + ++ ++     P W+ E      G +  + +  +       
Sbjct: 130 REVENFNLEKALKKLKEKDRIEYLSVKFSHPRWYVEYAIELLGYDDAIRLLLSNNRAQRY 189

Query: 179 DLTVKF------DIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            + V         +  +  + N   A       +++ E    I  L  + +G + +QD +
Sbjct: 190 YVRVNPIKTDIDSLADYLEEHNVRVARTPVDDVLKILEYKTPITRLEWYKQGYFVIQDLA 249

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++    + G      +LDL AAPG KT  +   + +  ++ A+D S  RL K+R  +  L
Sbjct: 250 SAYVAHVLGPEKGERILDLAAAPGSKTFHVAHLMENTGEIIAVDYSLERLNKMREKMKIL 309

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +    ++  D   +  K+ FD +++DAPCSS+GT R+ P+V W  D   I K    Q+ 
Sbjct: 310 GVRNVKLVHADGMKFKEKEEFDRIILDAPCSSSGTYRQFPEVKWRFDERKIKKVIQVQKA 369

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      ++ GG + +S CS+   ++EE ++  +  + I  ELV    ++ +   + + 
Sbjct: 370 MLRNAYRNLRIGGEMTYSTCSIRIDENEENIKYAM--NKIGFELVDYPFSWGERGFLEIG 427

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +   R    + +           FF   LR+
Sbjct: 428 ---DKVFRAWTHLHDCNS--------FFIAKLRK 450


>gi|170693574|ref|ZP_02884732.1| Fmu (Sun) domain protein [Burkholderia graminis C4D1M]
 gi|170141356|gb|EDT09526.1| Fmu (Sun) domain protein [Burkholderia graminis C4D1M]
          Length = 419

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/443 (21%), Positives = 155/443 (34%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V+R            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLRLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAESGAGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     S       
Sbjct: 72  PARRMA-------LLGLMQ------------------TAGRSALKPFVSDSESRWLEHVA 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                   +     +P+W  + L   +    +  ++ A   P  +DL         +   
Sbjct: 107 MIDPESLPLRIRLNLPDWIYQALAKRFEAAELAQLAAALNYPAPLDLRANPIKASRDDVL 166

Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           + L+   +  G                +  L  F +G   VQD  + +   L        
Sbjct: 167 NALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQQGWLEVQDEGSQLLCSLVAPKRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A D+S+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E VVQ+ L   P    +        + ID+ M      ++ + P
Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLADHPDFALVPAREVLAEQRIDLEMGD----YLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|21233175|ref|NP_639092.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|46396948|sp|Q8P4G1|RSMB_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|21115024|gb|AAM43004.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
          Length = 437

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 184/437 (42%), Gaps = 39/437 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V  +  SL   L       +      RD+ LV AI    LR  P  D  L   L   LP 
Sbjct: 24  VFDQGRSLKAELTAALPGVS----DPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPP 79

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           +   L+ LL    AQ+  L +  +A +   VE  +     R  A +VN++LRR  RE   
Sbjct: 80  RDAELKALLMAGFAQLDVLQLPAHAALSATVEACRALGRPRQ-AGMVNAVLRRAQREGFP 138

Query: 138 LLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDLT-VKFDIETWAHKLNA 195
            +   A  +  P W +++L   +  +   + +  A ++P+++ +   +     +  +L  
Sbjct: 139 AV---ADDAGWPSWLRKQLRADWGDQAEAIFVESARMAPMWLRVPRARVSPAEYVARLAE 195

Query: 196 VMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
             +      +       +    +  LPGFA+G   VQD SA              VLD C
Sbjct: 196 QGITAHTDPVLADAVRLDTAVPVSQLPGFAQGDVSVQDGSAQQVADALALAPAARVLDAC 255

Query: 250 AAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE----DIIEMDAFDYCP 303
           AAPGGK A         ++TALDV  RRLE++R  + R               D   +  
Sbjct: 256 AAPGGKAAHLLERHPQLQLTALDVDARRLERVRQTVQRTAPDRTVRLHPADAADTAAWWD 315

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +LL      ++PGG +++
Sbjct: 316 GQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARLLEACWRTLRPGGQLLY 375

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           + CSL K++++  ++  L+ +    +  PL + +  +                     + 
Sbjct: 376 TTCSLLKRENQTQIEAFLQRT-ADAQAQPLGAQFGHAAGAG----------------RQR 418

Query: 424 DGVSSGMDGFFAVALRR 440
                  DGFF   L +
Sbjct: 419 FPGEQQCDGFFYALLLK 435


>gi|149173494|ref|ZP_01852124.1| sun protein [Planctomyces maris DSM 8797]
 gi|148847676|gb|EDL62009.1| sun protein [Planctomyces maris DSM 8797]
          Length = 477

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 170/425 (40%), Gaps = 49/425 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  LL    R    ++  +           LS  D  L   I    +R    +D +
Sbjct: 33  ARQLAFFLLEEYRRTDQFISDSMQQWERRI---DLSSADWRLAMEISIGVVRRQLTLDTI 89

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++  L     + +  L  LL++   Q++ LD + D+A V   VE A + +  R + K+VN
Sbjct: 90  IESQLTRPREKVEAPLWTLLQIGAYQLVMLDQIPDHAAVSETVELAGKLQRVR-WKKMVN 148

Query: 126 SILRR--------------------------------VSREKIELLQRIAGISIIPEWFK 153
           +ILR                                       +    ++     P    
Sbjct: 149 AILRSISRLTADDIATEPQSNTIPLSADRYRSFSIGLFPNPIADPAGYLSKAFSFPLPVI 208

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVMLPTGGIRLKELPE 210
                 +  ++ + ++        + L +   +   E    +L A  +        +   
Sbjct: 209 RDWLTRFSVQQTMQMAQWFNQRNNLYLRINALQTGREQLLEELQAEGIQVSPGDEPQAIR 268

Query: 211 -----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
                ++ +L GF+ G + +QD SA     L       +V D+CAAPG KT  L   + +
Sbjct: 269 LEEPVAMENLVGFSAGKFTIQDQSAMAAGNLLNPQPEETVWDMCAAPGTKTTHLAELMYN 328

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAPCSSTGT 321
              + A DVS  RLEK+  N  RL L   +        +    K FDA+LVDAPCS++G 
Sbjct: 329 RGTLIATDVSCDRLEKIEQNASRLGLTCIETHLVNQPDEIWSTKQFDAILVDAPCSNSGV 388

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + + P+  W  D   + +    QR LL Q    +K  G +V+S CS D +++E+++Q VL
Sbjct: 389 LGKRPEARWRLDEVSLKELNQIQRDLLEQAFQHLKSSGRLVYSTCSFDPRENEDLLQDVL 448

Query: 382 RSSPI 386
           R  P 
Sbjct: 449 RDHPE 453


>gi|255066507|ref|ZP_05318362.1| methyltransferase, RsmB/NOP family [Neisseria sicca ATCC 29256]
 gi|255049387|gb|EET44851.1| methyltransferase, RsmB/NOP family [Neisseria sicca ATCC 29256]
          Length = 419

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 162/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   +       L ++D+  +       LR   +I AVL    
Sbjct: 10  AKVLADMLTFKQPADAVLSAYFRKHK--KLGRQDRHEIAETAFAALRHYQKISAVL---- 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLSSL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  +  E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDDLHTAAELPQWLVEQLQKHFSDEEILAFGRSTNQAAPLDIRVNTLKGRRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + + K    Q  +L      V
Sbjct: 285 HDSRIARLTGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETVAKLLEQQHSILDAAAKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L+  P               ID+        ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENEMQVERFLKEHPEYELFDCAELLAALKIDLNTG----KYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418


>gi|288932240|ref|YP_003436300.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642]
 gi|288894488|gb|ADC66025.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642]
          Length = 446

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 107/451 (23%), Positives = 184/451 (40%), Gaps = 37/451 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++ +L  + ++ IS   LL   +     + +  + +  V A V    +    ID +L+
Sbjct: 15  EIAAEILEKLDKEVISEKELLRRFF---LGKNVDYKIRGAVHAYVMEVSKRRNVIDFILE 71

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA------ 121
             L    L   K  ++ LLR++  +I +  V      D AV  AK+    +  +      
Sbjct: 72  KALKPKKLEDVKPFVRNLLRIATYEIFFKKVPPALATDCAVRIAKKRFGIKAASFVNAIL 131

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           +    +  +   EK+   + +A     PEW+ +  E    +   L I++   +      T
Sbjct: 132 RKAERVDLKKEMEKLSRTKYLALKYFHPEWYVKMAEKLGIEVEELLIANLENTIYIRVNT 191

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIV--SLPGFAEGV---WWVQDASASIPVQL 236
           +K   E     L    +      L E+ + +     P + +G    + +QD ++ +  + 
Sbjct: 192 LKTSEENLRRYLEKNDVIVEETFLPEVFKVVSYDKPPAYLDGHNELFVIQDLASCLVSRT 251

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   V DLCAAPG KT+ +   + +  K+ A+D SK RLE++R  L++L +    I
Sbjct: 252 LNPEPGDVVADLCAAPGSKTSHMAALMENKGKIIAVDNSKERLERMRARLNKLGVENVKI 311

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           +  DA     +   D VL+D PCSSTG++R +P V W  D     K+   QRK+L     
Sbjct: 312 LLGDASKIELEA--DKVLLDPPCSSTGSVRNYPSVKWRYDPRLFWKTVELQRKMLKNAS- 368

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVV---QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             K G  +V+S CS+  +++EE V    K L+        +                  E
Sbjct: 369 --KIGDEIVYSTCSITFEENEENVLFASKFLKVEDAY---IGFGDKGISRYGKKRFPYAE 423

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +R  P              GFF   LRR 
Sbjct: 424 LVVRTYPH--------KHDTAGFFISKLRRK 446


>gi|319639525|ref|ZP_07994272.1| SUN protein [Neisseria mucosa C102]
 gi|317399096|gb|EFV79770.1| SUN protein [Neisseria mucosa C102]
          Length = 417

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 51/449 (11%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  +  +L  +L           L+ ++   ++ I     R+L  +  +
Sbjct: 4   AQKLAADSVAAV-AEGRNLQDVLAEIRVAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    + F    N+
Sbjct: 61  LGQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 117

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 118 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNRYPKHW-HNITTALQSHPPMTLRV 176

Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                + E++  KL A  +          + E    +  LPGF++G+  VQD  A     
Sbjct: 177 NRRHGNAESYLEKLAAEGILARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGAQRAAY 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    +   +LD CAAPGGKT  ++  +   VTALD+ + RL +++ NLDRL      + 
Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQTASLA 296

Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA D   +   K FDAVL D PC+++G  RR+PDV W R   D VK+A  Q  LL   
Sbjct: 297 CADAQDLAAWYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDAL 356

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +   G ++ + CS+  ++++  +QK L       EL+  +                 
Sbjct: 357 WQTLTKNGRMLLATCSVFVEENDGQLQKFLNRH-ADAELIESHV---------------- 399

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + P+  +         DGF+   +++
Sbjct: 400 ---LLPNKHQ---------DGFYYALIKK 416


>gi|66770115|ref|YP_244877.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|66575447|gb|AAY50857.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 437

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 184/437 (42%), Gaps = 39/437 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V  +  SL   L       +      RD+ LV AI    LR  P  D  L   L   LP 
Sbjct: 24  VFDQGRSLKAELTAALPGVS----DPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPP 79

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           +   L+ LL    AQ+  L +  +A +   VE  +     R  A +VN++LRR  RE   
Sbjct: 80  RDAELKALLMAGFAQLDVLQLPAHAALSATVEACRALGRPRQ-AGMVNAVLRRAQREGFP 138

Query: 138 LLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDLT-VKFDIETWAHKLNA 195
            +   A  +  P W +++L   +  +   + +  A ++P+++ +   +     +  +L  
Sbjct: 139 AV---ADDAGWPSWLRKQLRADWGDQAEAIFVESARMAPMWLRVPRARVSPAEYVARLAE 195

Query: 196 VMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
             +      +       +    +  LPGFA+G   VQD SA              VLD C
Sbjct: 196 QGITAHTDPVLADAVRLDTAVPVSQLPGFAQGDVSVQDGSAQQVADALALAPAARVLDAC 255

Query: 250 AAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE----DIIEMDAFDYCP 303
           AAPGGK A         ++TALDV  RRLE++R  + R               D   +  
Sbjct: 256 AAPGGKAAHLLERHPQLQLTALDVDARRLERVRQTVQRTAPDRTVRLHAADAADTAAWWD 315

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +LL      ++PGG +++
Sbjct: 316 GQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARLLEACWRTLRPGGQLLY 375

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           + CSL K++++  ++  L+ +    +  PL + +  +                     + 
Sbjct: 376 TTCSLLKRENQTQIEAFLQRT-ADAQAQPLGAQFGHAAGAG----------------RQR 418

Query: 424 DGVSSGMDGFFAVALRR 440
                  DGFF   L +
Sbjct: 419 FPGEQQCDGFFYALLLK 435


>gi|332969155|gb|EGK08187.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae
           ATCC 23330]
          Length = 418

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/447 (24%), Positives = 187/447 (41%), Gaps = 50/447 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++  +  V   +     L ++   +     L+ +D+ +++ +     RFL  +  +L 
Sbjct: 8   KLAAQTVLAVANGKNLADELANIIAQNP---DLTAQDKGMLQDLAYGCQRFLGSLRYMLG 64

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +L   L      L+  L V++ Q+ +   A +AVV+ AVE   +    ++ +   N+IL
Sbjct: 65  KLLNKPLD--NPLLEAHLLVAMYQLNHTKNAPHAVVNEAVEYIGKMGRGQYRS-FANAIL 121

Query: 129 RRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV-- 182
           RR  RE+                +P W +  L+  Y K     +  A  S   + L V  
Sbjct: 122 RRFQREQEGLNKSCQFNNIAKFNLPTWLQSSLQTQYPKHW-HNMVTAFQSHPPLTLRVNR 180

Query: 183 -KFDIETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
              + + +   L     A             P  +  LP FA G   VQD  A     L 
Sbjct: 181 RHMNADAYLLLLEQAGIAAKKLDDYAIRITTPVPVNQLPQFANGAVSVQDWGAQQAAYLL 240

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
              N   VLD CAAPGGKT  L+  +   VTALD+ K+RL +++ NL RL L A      
Sbjct: 241 NPQNGERVLDACAAPGGKTGHLLELANCSVTALDIDKKRLARVQDNLARLKLQAALYCSP 300

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
             +  ++     FD +L D PC+++GTI+R+PD+ W R  +D +K+A  Q  +L +    
Sbjct: 301 AQNLAEWWDGVPFDVILADVPCTASGTIKRNPDIKWLRRPNDALKTAQQQEIMLDELWKT 360

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +K GG ++ + CS+ + +++   QK LR       L                        
Sbjct: 361 LKQGGRMLLATCSIFEAENQLQCQKFLRRHADATLLEEKV-------------------- 400

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + P+  +         DGF+   + + 
Sbjct: 401 LIPNEKQ---------DGFYYALIHKK 418


>gi|238022263|ref|ZP_04602689.1| hypothetical protein GCWU000324_02170 [Kingella oralis ATCC 51147]
 gi|237866877|gb|EEP67919.1| hypothetical protein GCWU000324_02170 [Kingella oralis ATCC 51147]
          Length = 422

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 169/444 (38%), Gaps = 51/444 (11%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L+ ++        +L     D+    L + D+  +       LR   +I AVL      
Sbjct: 12  VLAQMLTFEQPADVVLSNYLRDN--CKLGRNDRHEIAETAFAALRHYQKIAAVL----RR 65

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              + + +    L +               +    +        +     + +       
Sbjct: 66  PAVQSRKAALAALILG----------RSVSISQIEDLLNNADNEKELLSSLKA------- 108

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
            K E    +   + +P W   RL+  Y  E++LA   +   P  +D+ V       +   
Sbjct: 109 RKNEFSGYLNTAAELPSWLIARLQQHYTDEQILAFGRSVAQPAPLDVRVNTLNSKRDKAL 168

Query: 191 HKLN-----AVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            +L      A+  P     ++   +  +   P F +G   VQD  + + VQL G      
Sbjct: 169 AQLQTDYPQAIATPLAPHGIRFPNKPALNQHPLFLDGTIEVQDEGSQLLVQLVGAKRGEI 228

Query: 245 VLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMD 297
           ++D CA  GGK       + +  ++ A DVS++RL  L+  + R  L          E D
Sbjct: 229 IVDFCAGAGGKTLAIGAQMANKGRIYAFDVSEKRLANLKPRMTRAGLTNIHPEKIHSETD 288

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D VLVDAPCS  GT+RR+PD+ + +  D +      Q+ +L      V+ 
Sbjct: 289 PRITRLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSPDTLASLQTQQQNILHAAAELVRA 348

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+  +++E   +  L++ P   EL+  +          + L+   ++R+  
Sbjct: 349 GGRLVYATCSILPEENENQAEHFLQTHP-DFELLDCSELLAA---QKIPLNTGKYLRL-- 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                 D  +   DGFFA   +R 
Sbjct: 403 ------DTATHHTDGFFAAVFQRK 420


>gi|312795301|ref|YP_004028223.1| 16S rRNA m(5)C 967 methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312167076|emb|CBW74079.1| 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 428

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 162/445 (36%), Gaps = 46/445 (10%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLADVLKFAGPADAAASRFFRAHP--KLGHAERGVIAETVFAVLRRKMEYGHLAESGSGT 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + QI  L+     +            +    +            
Sbjct: 72  PARRLT-------LLGLMQIAGLNALRAHLSPQEFAWLDHVSKIDPASLPARVRTNLPLW 124

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
            +  L  R+A     P+   + L           ++ A   P  +DL       + +   
Sbjct: 125 IESALGARLATPDAGPDAVAQELAR---------LAAALNYPAPLDLRANPIRTNRDAVL 175

Query: 191 HKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +                  +I +L  F +G + VQD  + +  QL        
Sbjct: 176 AALVEAGVQAEPTPYAPLGIRVAGKPAIQTLAAFRQGWFEVQDEGSQLLCQLVAPRRGEM 235

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS +RL KL+  L R  L     +    E D
Sbjct: 236 VVDFCAGAGGKTLALGAMMRSSGRLYAFDVSDKRLGKLKPRLARSGLSNVHPVVIDSEHD 295

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D VLVDAPCS  GT+RR+PD+ W +    + + A  Q  +L      +KP
Sbjct: 296 VKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTPQSVAELAVKQASILAAAARLLKP 355

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CSL   ++E +V+  L + P+  E VP +    +     +AL     + + P
Sbjct: 356 GGRLVYATCSLLGDENEGIVEPFLAAHPM-FERVPASQVLAE---QKIALDTGDDLTLWP 411

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                      G DGFFA  ++R+ 
Sbjct: 412 H--------RHGTDGFFATVMQRVA 428


>gi|242398901|ref|YP_002994325.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
           terminal NusB regulator domain [Thermococcus sibiricus
           MM 739]
 gi|242265294|gb|ACS89976.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
           terminal NusB regulator domain [Thermococcus sibiricus
           MM 739]
          Length = 450

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 186/455 (40%), Gaps = 38/455 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            + + +LS +  + +S    L+  +     +    R + L  A +    ++  +ID + +
Sbjct: 11  ELIADILSLIEERELSSKNALERTFKRVRGKDRE-RARGLAHAYIFEIEKWKRKIDFIGN 69

Query: 69  FVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL    +      L  LLR+ + ++ +  V      D  V  A +DK +   AK +N++
Sbjct: 70  SVLKGIKIEELDPYLANLLRIGIFEMKFKGVVPAIATDSIVR-AVKDKYDLSRAKFINAV 128

Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           LR V               + ++ ++     P W+ E + +  G E  L +  +   P  
Sbjct: 129 LRDVESFDVGKALEALRERDKIEYLSIKFSHPRWYVEYVIDLLGYEEGLRLLLSNNKPQR 188

Query: 178 IDLTVKF---DIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             + V     DI++ +  L               +++ E    I  L G+ EG + +QD 
Sbjct: 189 YYIRVNPLKTDIDSLSDYLEEHGVRVTRTPVDDILKVLEYKTPITHLEGYKEGYFVIQDL 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           +++    +        VLDL AAPG KT  +   + +  ++ A+D S  RL K+   +  
Sbjct: 249 ASAYVAHVLSPEKGERVLDLAAAPGSKTFHVAQLMENTGEIIAVDYSLERLRKMETKMKI 308

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L +    ++  D   +   + FD +++DAPCSS+GT R+ P+V W  + + I K    Q+
Sbjct: 309 LGVKNVKLVHADGMKFKDMRKFDKIILDAPCSSSGTYRQFPEVKWRFNKEKIKKVIQVQK 368

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            ++      ++  G + +S CS+   ++EE V+  L      +   P +       ++  
Sbjct: 369 AMIRNAYKNLRDEGEMTYSTCSIRIDENEENVKYALEKVGFDLVTYPFSWGERGFTEIGE 428

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                        M+ +        + FF   L+R
Sbjct: 429 -------------MVFRSFTHLHDCNSFFIAKLKR 450


>gi|167580113|ref|ZP_02372987.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis TXDOH]
          Length = 420

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/446 (22%), Positives = 165/446 (36%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLADVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +     + V   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKATRDEVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V + L + P    LVP +    +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSEFLAAHP-EFALVPASRVLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|226942185|ref|YP_002797258.1| Fmu, rRNA SAM-dependent methyltransferase [Azotobacter vinelandii
           DJ]
 gi|226717112|gb|ACO76283.1| Fmu, rRNA SAM-dependent methyltransferase [Azotobacter vinelandii
           DJ]
          Length = 443

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/425 (27%), Positives = 194/425 (45%), Gaps = 32/425 (7%)

Query: 36  SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95
           +    ++ RD+ L + +     R+ PR+  + + +L   L      ++ LL + + Q+L+
Sbjct: 28  AQLEQVAPRDRALAQELAFGAARWQPRLALLAERLLRKPLKAADRDVEALLLIGLYQLLH 87

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI----IPEW 151
             +  +A +   V  A++ ++      L+N++LRRV RE   LL  +A   +     P W
Sbjct: 88  TRIPAHAAIGETVACAEQLRKP-WAKALLNAVLRRVQREGEALLAELANDPVARTAHPRW 146

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIR---- 204
            ++ L   +  E   AI  A      + L V       +T+   L A  +     R    
Sbjct: 147 LQQALAQHWP-EHWEAICAADNEHPPLTLRVNRRLTARDTYLATLKAAGIAASACRFSRD 205

Query: 205 --LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262
             L + P  + SLPGFAEG+  VQD +A +   L   +    VLD C APGGKT  L+ S
Sbjct: 206 GILLDEPCDVRSLPGFAEGLVSVQDEAAQLAAYLLEPMPGQRVLDACCAPGGKTCHLLES 265

Query: 263 GAKV---TALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCS 317
             ++    A+D+ ++RL ++R NLDRL L A            +   + F  +L+DAPCS
Sbjct: 266 EPRLAELVAIDLEEKRLARVRENLDRLGLAARLVAADARATEAWWDGRRFQRILLDAPCS 325

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           +TG IRRHPD+  TR   DI   A  Q +LL      ++ GGI++++ CS+   ++ + +
Sbjct: 326 ATGVIRRHPDIKLTRQASDIPALASLQGELLDALWPTLEVGGILLYATCSILPAENSDTI 385

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
              L  +P   EL          +     L+     ++ P           G DGF+   
Sbjct: 386 AAFLARTPGAREL----DIASGFVGAKPGLAQRHGRQLLPQ--------PHGHDGFYYAK 433

Query: 438 LRRLI 442
           L ++ 
Sbjct: 434 LIKIA 438


>gi|193215241|ref|YP_001996440.1| Fmu (Sun) domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193088718|gb|ACF13993.1| Fmu (Sun) domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 448

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 173/449 (38%), Gaps = 33/449 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  LL     +      +L        +  L   D+  +   +   LR    ++AV+   
Sbjct: 13  AYELLCS---EARPADAVLSEYLRARKY--LGSHDRSFISETIYNLLRKELFLEAVVQKS 67

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD---LAVEQAKRDKENRHFAKLVNSI 127
              S   +  S + +  + +  +  +D+   A+VD        A+   +    A    + 
Sbjct: 68  AKGS--SRPKSFKNVGVLYLFLLSDMDIERRALVDVFGEMASLAEPYFDALDAAYQAFTD 125

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---F 184
             +     I  L++ A     PEW  E L   + +  +  I ++   P  + L       
Sbjct: 126 TTKSKSTPILFLEKHA----FPEWMTEELLKEFDEPTLQLIYESLNKPAPLALRANSLKI 181

Query: 185 DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             E    KL    +PT          + +    I+    + +G+  +QD  + +  +L  
Sbjct: 182 SREALQKKLEKESIPTFLGKLSADALICKGRRRIIQSQCYQDGLCEIQDEGSQLISRLLD 241

Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
                +VLD CA  GGKT  L   + +   + A DV+ +R   +R  + R       +  
Sbjct: 242 PKPKDTVLDACAGGGGKTLHLAALMKNKGAIFAYDVNPKRFGNIRQRIKRSGQQNIRLLD 301

Query: 294 --IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
              ++  F     +  D +L+DAPC+ +GT+RR+PD+      + + +    Q ++L + 
Sbjct: 302 SPEKLAQFKNDWHEKIDCLLIDAPCTGSGTVRRNPDLKKRLTKEALQRITAQQAEILEEF 361

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +KP G ++++ CSL + ++E  ++  L   P    L P++S        A A     
Sbjct: 362 SVLLKPNGKMLYATCSLFRDENEGQIESFLEKHP-DFRLEPISSILENERHAAHAALQNK 420

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             R   +   K+       DGFFA   R+
Sbjct: 421 --RFEGETYLKLRPDKDNTDGFFAAIFRK 447


>gi|323527123|ref|YP_004229276.1| Fmu (Sun) domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323384125|gb|ADX56216.1| Fmu (Sun) domain protein [Burkholderia sp. CCGE1001]
          Length = 419

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/443 (21%), Positives = 162/443 (36%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V+R            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLRLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +  A  A +   V +A+    +        S+  R+  
Sbjct: 72  PARRMA-------LLGL-----MQTAGRAALKPFVSEAESRWLDHVATIDPESLPLRIRL 119

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                         +P+W  + L   +    +  ++ A   P  +DL         +   
Sbjct: 120 N-------------LPDWIHQALARRFEPAELAQLAAALNYPAPLDLRANPMKASRDEVL 166

Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L+   +  G                +  L  F +G   VQD  + +   L        
Sbjct: 167 GALSKAGIEAGATPFAPFGVRVAGKPPLTKLDAFQQGWLEVQDEGSQLLCSLVAPKRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A D+S+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E VVQ+ L   P    +        + ID+ M      ++ + P
Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLADHPDFALVPAREVLAEQRIDLEMGD----YLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|254720564|ref|ZP_05182375.1| Fmu (Sun) domain-containing protein [Brucella sp. 83/13]
 gi|265985597|ref|ZP_06098332.1| fmu domain-containing protein [Brucella sp. 83/13]
 gi|306838069|ref|ZP_07470926.1| Fmu (Sun) domain-containing protein [Brucella sp. NF 2653]
 gi|264664189|gb|EEZ34450.1| fmu domain-containing protein [Brucella sp. 83/13]
 gi|306406806|gb|EFM63028.1| Fmu (Sun) domain-containing protein [Brucella sp. NF 2653]
          Length = 429

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQGRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDIVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|115376942|ref|ZP_01464162.1| tRNA and rRNA cytosine-C5-methylase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820573|ref|YP_003952931.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115366053|gb|EAU65068.1| tRNA and rRNA cytosine-C5-methylase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393645|gb|ADO71104.1| Methyltransferase, RsmB/NOP family [Stigmatella aurantiaca DW4/3-1]
          Length = 480

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/454 (21%), Positives = 171/454 (37%), Gaps = 48/454 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
                    V  +       LD      A   L   ++  V   V   LR    +D +L 
Sbjct: 51  QACLEAYGSVRHEGRLSDRALDFTLRRKAH--LYSNERRAVAERVYALLRRQRTVDWLLA 108

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL---AVEQAKRDKENRHFAKLVN 125
                   R + + Q +LR++ ++IL+ +    AVV+      E +         A  + 
Sbjct: 109 R-ARPGFDRLETTRQDVLRLAASRILHGE-PLEAVVNSSSLPSEDSTSLGALPRAAGELE 166

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK-- 183
           ++                  + +P++   +       E     ++A      +   V   
Sbjct: 167 ALPLAKR---------FPIAASLPDFLAVKF-QETFGEDASQAAEAMNERAPLTARVNLL 216

Query: 184 -FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQL 236
             D      +L A  + +    L           ++ SL  F +G+  +QD  + +    
Sbjct: 217 KGDRAELQRRLAAEGVESTPTPLSPLGLWLETRVNVFSLQCFKDGLLELQDEGSQLLGM- 275

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   V+D CA  GGKT Q    + +   + ALDV + R+E+LR    R  ++    
Sbjct: 276 LVDSPPTRVVDACAGAGGKTLQLAAQMKNRGDLHALDVDEVRIEELRKRARRAGVHNVRT 335

Query: 294 I-------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                     D      K   D VLVDAPCS TGT RR PD  +    +D+ + A  Q+ 
Sbjct: 336 QLIPAEGPAADEALVALKDKADRVLVDAPCSGTGTYRRKPDGRYRLTPEDLKEHAARQKA 395

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL +  + VKPGG +++  CS+ ++++E V++  L   P    + P++      +   ++
Sbjct: 396 LLERFSTMVKPGGRLIYGTCSILREENEAVIEDFLSRHP-DFTVRPVSQELGPELGDKVS 454

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             P  ++R+ P         +   DGFF   L R
Sbjct: 455 RGP--FLRLAPH--------THNTDGFFGAILVR 478


>gi|121635057|ref|YP_975302.1| SUN-family protein [Neisseria meningitidis FAM18]
 gi|120866763|emb|CAM10516.1| SUN-family protein [Neisseria meningitidis FAM18]
 gi|325128459|gb|EGC51340.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis N1568]
 gi|325132456|gb|EGC55149.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M6190]
 gi|325138230|gb|EGC60799.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis ES14902]
 gi|325142541|gb|EGC64941.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis 961-5945]
 gi|325198495|gb|ADY93951.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis G2136]
          Length = 418

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKIDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418


>gi|325130412|gb|EGC53176.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis OX99.30304]
 gi|325136147|gb|EGC58755.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M0579]
 gi|325201940|gb|ADY97394.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240149]
 gi|325208309|gb|ADZ03761.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis NZ-05/33]
          Length = 418

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418


>gi|226939434|ref|YP_002794507.1| sun-like protein [Laribacter hongkongensis HLHK9]
 gi|226714360|gb|ACO73498.1| Probable sun-like protein [Laribacter hongkongensis HLHK9]
          Length = 447

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/448 (22%), Positives = 163/448 (36%), Gaps = 57/448 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
                L  V+        +L   + D   R L  +D+ L+   +   LR    + A+   
Sbjct: 10  AVVDALRRVLPCERPADAVLSAYFRD--MRKLGAQDRHLIAETIFAVLRRRAFLTALTAP 67

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                      + ++L+  S+ ++  L+V +   +    E  K+       A     +  
Sbjct: 68  ---------SATPRRLVIASLIKVRGLNVRELDGI--LTEAEKKWVVELKAAHPELDL-- 114

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA-ISDACISPLYIDLTVKF---D 185
                        AG + +PEW  + L      +  +  +  +  +   +DL        
Sbjct: 115 -------------AGRAELPEWVVDALRAGGQDDDAIVALGHSMQNSAPLDLRANTLKMR 161

Query: 186 IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            E     L A  L                   I   P F EG   VQD  + +   L G 
Sbjct: 162 REDVLAALRAAGLELAPTPFSPVGLRVKGKPPINRHPLFLEGAVEVQDEGSQLLGLLVGA 221

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
                V+D CA  GGKT     ++ S  ++ A DVS++RL  L+  L R  L        
Sbjct: 222 RRGEMVVDFCAGAGGKTLHLGAMMASRGRLYAFDVSEKRLANLKPRLARSGLSNVTPQLI 281

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             E D+         D VLVDAPCS  GT+RR+PD+ + +    I +    Q  +L +  
Sbjct: 282 QNENDSKIKRLAGKVDRVLVDAPCSGLGTLRRNPDLKFRQSPASIAELNKTQASILARAA 341

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             VKPGG +V++ CS+   +++ +V   L + P   E           + +         
Sbjct: 342 QLVKPGGRLVYATCSVLPAENDAIVDAFLAAHPEFSETPVNTLLEQAGVALDTGSR---- 397

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +R+ P +           DGFFA  L R
Sbjct: 398 LRLLPGV--------HSTDGFFAAVLTR 417


>gi|187930737|ref|YP_001901224.1| sun protein [Ralstonia pickettii 12J]
 gi|187727627|gb|ACD28792.1| sun protein [Ralstonia pickettii 12J]
          Length = 443

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 101/438 (23%), Positives = 166/438 (37%), Gaps = 34/438 (7%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           +R+  +L   +D               +  V+ +     R+L   D ++  ++       
Sbjct: 22  LRQGTALPQAIDAVC-----HGQPAPARGAVQDLAYRATRWLGSTDWLIRTLIPRPPAEG 76

Query: 79  KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                 LLRV++AQ+L        + VVD  V  A  D +  H   ++N +LRR  RE+ 
Sbjct: 77  AA---NLLRVALAQLLDDPQPYAPFTVVDQTVTAASADPKLSHGKGMINGVLRRFLREQP 133

Query: 137 ----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186
               ++    +  +  P W+ + + + Y       ++     P  +       + V   +
Sbjct: 134 ALVADMQADPSAATNYPMWWIDAVRSAYPDAWQTILAAGNRRPPMVLRVNPRRIAVDAYL 193

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
              A                     +  +PGFA+G   VQDA A +   L        VL
Sbjct: 194 ARLAEAGIDAERIGEQAVRLARAIPVSDVPGFADGDVSVQDAGAQLAATLLDVAPGQRVL 253

Query: 247 DLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302
           D CAAPGGKT  L+    +   TAL+    R  ++  NL RL+  A            + 
Sbjct: 254 DACAAPGGKTGHLLELADRLDATALESDAARAVRISENLTRLNQTATICVGDAAKPDTWW 313

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +L D PCS+ G +RRHPD+ W R   D+      QR ++    + +KPGG +V
Sbjct: 314 DGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALVALQRDIVRALWACLKPGGKLV 373

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CS+   + E+  +   R     + L         S D A A                
Sbjct: 374 YVTCSIFPTEGEDQARWFERHLEDAIRLHAPGQLLPVSPDAAQAS----------GFASG 423

Query: 423 IDGVSSGMDGFFAVALRR 440
              +    DGFF    ++
Sbjct: 424 ASPMPLDHDGFFYAVFQK 441


>gi|58040691|ref|YP_192655.1| tRNA/rRNA cytosine-C5-methylase [Gluconobacter oxydans 621H]
 gi|58003105|gb|AAW61999.1| tRNA/rRNA cytosine-C5-methylase [Gluconobacter oxydans 621H]
          Length = 457

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/467 (21%), Positives = 169/467 (36%), Gaps = 61/467 (13%)

Query: 1   MKSGMNARLV-SSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M     ARL  +  LL  +    R       +  + +  +  +   D+  + AIV   LR
Sbjct: 1   MTP--AARLSGAIDLLCAIQNAPRRPADATANAFFRERRY--IGGGDRRAISAIVWDVLR 56

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQ--QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
              R+   L  +           L     L +                   +E  ++   
Sbjct: 57  GWRRLQWHLKDISG----DISPRLLCSASLLLG---------------GETMENVRKLFS 97

Query: 117 NRHFAKLVNSILRRVS------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
              +A+   +    ++      +E     Q IA     P+W    L   +G  R+    +
Sbjct: 98  GERYAQKPLTSREDMALKGLEGKELSTQKQPIAVRLEYPDWLDSALRETFGN-RLPDEME 156

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEG 221
           A +    +DL V       E    +L    L     +L          + + +   F +G
Sbjct: 157 AMLGTPTLDLRVNLLKGSREAAIRELRRESLQAEPTKLSPWGLRLDGRQPVTATQAFKDG 216

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278
           +  +QD  + + V          VLD CA  GGKT   A  + +   + A DV ++RL+ 
Sbjct: 217 LVEIQDEGSQLVVAAADARGEHRVLDYCAGAGGKTLALAMTMENRGHIVACDVHEKRLDG 276

Query: 279 LRCNLDRLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
               L R  ++  +       D +       FD VLVDAPCS TGT RR+PD       +
Sbjct: 277 AVKRLRRAGVHNVERHLLVSGDKWAKRRAGSFDRVLVDAPCSGTGTWRRNPDARLRLTPE 336

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           DI +    Q ++L +  S VKPGG ++++ CSL   ++ + +   L+     V L     
Sbjct: 337 DIQELVIKQAQILDRAASLVKPGGRIIYATCSLLACENGQQIDAFLKRRTDFVRLPKEQM 396

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +     ++                   +  +  G DGFFA  L R++
Sbjct: 397 SELLPAELRNKA------------QFSLTPLRDGTDGFFACVLERVV 431


>gi|238028410|ref|YP_002912641.1| Fmu (Sun) domain-containing protein [Burkholderia glumae BGR1]
 gi|237877604|gb|ACR29937.1| Fmu (Sun) domain protein [Burkholderia glumae BGR1]
          Length = 461

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 101/443 (22%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFTGPADAATSRFFRAHP--KLGHGERGVIAEAVFAVLRRKMEFSHLAESGSGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +  A  + +   V  A+             S+  RV  
Sbjct: 72  PARRLT-------LLGL-----MQTAGRSALRQHVSDAEWAWLEHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
                       + +P+W  + L   +  E +   + A   P  +DL V       E   
Sbjct: 118 -----------RTNLPDWIHQALGQRFDAEALAQFAAAVNYPAPLDLRVNLQKATREQVL 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +  G          +        LP F +G+  VQD  + +   L        
Sbjct: 167 DALRIAGIEAGETPFAPNGVRVVGKPALTRLPIFQDGLIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  D I + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRDSIEELAPKQASILASAARLVKA 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V + L + P    LVP +    +     + L    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVTQFLAAHP-DFVLVPASQVLAE---QRIGLDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|300022354|ref|YP_003754965.1| Fmu (Sun) domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524175|gb|ADJ22644.1| Fmu (Sun) domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 431

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/459 (20%), Positives = 154/459 (33%), Gaps = 49/459 (10%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M+ G  AR   +  +L  ++ +   +   L        F      D+  +  +V   LR 
Sbjct: 1   MRPG--ARIAAAIEVLEAILNRYQPVAMALTDWGKAHRFAG--SGDRNAIGGLVYDALRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              +   L                  L +  A            + ++ E      +   
Sbjct: 57  RASLAWALGDDGPR-----------ALAIGAA---------PQALGISAEAVIAACDGAE 96

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            +    S   R    +       A  + IPEW        +G    +A  +A       D
Sbjct: 97  HSPPPLSDAERAGLTRDMAEAPDAARADIPEWLWPSFSAQFGGN-AVAEGEAMARRAPAD 155

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQ 226
           L V     T    L A++                          ++ +   F  G + +Q
Sbjct: 156 LRVNTLKSTQEKVLKALLPFGAAPCPVSPIGIRVPPPSGAQRTPNLQAEAAFQAGWFEIQ 215

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283
           D  + I   L G      VLDLCA  GGKT   A L+ +  ++ A D  + +L+ +   +
Sbjct: 216 DEGSQIAALLSGAGPRKQVLDLCAGAGGKTLALAALMQNTGQLYAYDADRNQLKPIFDRI 275

Query: 284 DRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            R ++    ++              FD VL DAPC+ TGT RR PD  W    + +    
Sbjct: 276 KRANVRNVQVLRAGDETALAALGPRFDVVLADAPCTGTGTWRRRPDAKWRLKPEALAARQ 335

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR +L +  S VKPGG +V+  CS+  +++ E V   L +      +VP   A+  + 
Sbjct: 336 AEQRSVLARAASLVKPGGQIVYVTCSILPEENVEQVAAFLDAH-RDFRIVPTADAWAAAG 394

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                +     G DGFF   L R
Sbjct: 395 LAGEVPVSADGR----SDTLLLSPGRHGTDGFFIAVLAR 429


>gi|187477912|ref|YP_785936.1| S-adenosyl-l-methionine transferase [Bordetella avium 197N]
 gi|115422498|emb|CAJ49023.1| putative S-adenosyl-l-methionine transferase [Bordetella avium
           197N]
          Length = 483

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/444 (21%), Positives = 160/444 (36%), Gaps = 54/444 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  ++R       +L      +    L  RD+  +   V   LR L R   + +     
Sbjct: 48  VLGEMLRWEHPADAVLSHWLRANP--ALGGRDRAELAEGVYDVLRNLRRYRQLAES---- 101

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                  + ++L  + +A            V   V  A    E    A++       +  
Sbjct: 102 ---GVGPAERRLAILGLA--------ATRGV-EYVNDALDPGEAAWLARVDQVDPASLPA 149

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
                         +P+W  ERL      E ++   +           +K + +     L
Sbjct: 150 NV---------RYSLPDWLAERLSVLPQAESLMGALNQAAQLDARANPLKIERDALLEVL 200

Query: 194 NAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            A                    +   SI   P F +G   VQD  + +   L G   +  
Sbjct: 201 RAGPAGRYDPQPMPYSPWGIRFKGHPSINRWPEFEKGEVEVQDEGSQLLALLVGPRRSEM 260

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     L+ S  ++ ALDVS  RL + +    R  L     +    E D
Sbjct: 261 IIDFCAGAGGKTLLLGALMRSTGRLYALDVSAARLARAKPRFARSGLSNVVPVVIDSEND 320

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A           VLVDAPCS  GT+RR+PD+ W ++   + +    Q ++L      V P
Sbjct: 321 ARVKRLAGKAQRVLVDAPCSGFGTLRRNPDLKWRQNPQSLAEMVALQHRILKSAARCVAP 380

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CSL  +++ +   + L  +P    L      + +   + +      ++++ P
Sbjct: 381 GGRLVYATCSLLPEENAQQADRFLAENPGFERLDAAALLHNRCDKLQL---EGPYVQLRP 437

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
           D+         G DGFFA    R 
Sbjct: 438 DL--------HGTDGFFAAVFERK 453


>gi|295677440|ref|YP_003605964.1| Fmu (Sun) domain protein [Burkholderia sp. CCGE1002]
 gi|295437283|gb|ADG16453.1| Fmu (Sun) domain protein [Burkholderia sp. CCGE1002]
          Length = 419

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/443 (21%), Positives = 154/443 (34%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V+R            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLRLNGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEFAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     +       
Sbjct: 72  PARRMA-------LLGLMQ------------------TVGRSALKPFVSEAEATWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +     +P+W  + L   +    +  ++ A   P  +DL         +   
Sbjct: 107 KIDPESLPLRIRLNLPDWICQALSMRFEGAELAQLAAALNYPAPLDLRANPIKASRDDVL 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +  G          +        L  F +G   VQD  + +   L        
Sbjct: 167 GALAKAGIEAGATPFAPFGVRVVGKPALTKLDAFQQGWLEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A D+S+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + I + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESIAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E VVQ+ L        LVP+     +     + L    ++ + P
Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLAEH-SDFALVPVRDVLAE---QRIELEMGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|229162801|ref|ZP_04290758.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           R309803]
 gi|228620683|gb|EEK77552.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           R309803]
          Length = 360

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 165/372 (44%), Gaps = 34/372 (9%)

Query: 93  ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144
           ++YLD V + A +  AVE AKR + ++  A +VN +LR + RE         + ++R+A 
Sbjct: 1   MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AV 196
            +  P W  +   + Y  E    + +  + P      V  D  T    +         A 
Sbjct: 60  ATSHPVWLVQEWASEYDLETAGKMCEINMLPPVPTARVNVDKVTVEEAIELLASEGIEAK 119

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                   ++    ++     F +G   +QD S+ +  +         VLD CAAPGGKT
Sbjct: 120 RGDLSDDAIQIERGNVAHTDAFKKGFLSIQDESSMLVARALEPNEGDVVLDSCAAPGGKT 179

Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310
             +        KV +LD+   ++  ++   DRL L   +   +D     ++   + FD +
Sbjct: 180 THIAERLKGTGKVMSLDLHAHKVRLIKQQADRLGLENVETKALDARKVQEHFANETFDKI 239

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           LVDAPCS  G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K
Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 299

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++E+V+++ L+ +P   E     +   +  +       EG ++I P             
Sbjct: 300 IENEQVIERFLQENP---EFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA--------T 348

Query: 431 DGFFAVALRRLI 442
           DGF+   LR+ +
Sbjct: 349 DGFYIACLRKKV 360


>gi|304387335|ref|ZP_07369527.1| SUN-family protein [Neisseria meningitidis ATCC 13091]
 gi|254670558|emb|CBA06419.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|304338586|gb|EFM04704.1| SUN-family protein [Neisseria meningitidis ATCC 13091]
          Length = 418

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 166/446 (37%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEEIEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N A     ++ + L    ++R+
Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCAEL-LQNLKIDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418


>gi|187925130|ref|YP_001896772.1| Fmu (Sun) domain protein [Burkholderia phytofirmans PsJN]
 gi|187716324|gb|ACD17548.1| Fmu (Sun) domain protein [Burkholderia phytofirmans PsJN]
          Length = 419

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/443 (20%), Positives = 155/443 (34%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKLTGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F             
Sbjct: 72  PARRMA-------LLGLMQ------------------TAGRNALKPFVSEQELSWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +     +P+W  + L   +    +  ++ A   P  +DL         +   
Sbjct: 107 KIDPESLPLRIRLNLPDWIYQALSKRFDAAELAQLAAALNYPAPLDLRANPIKASRDDVL 166

Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           + L+   +  G                +  L  F  G   VQD  + +   L        
Sbjct: 167 NALSKAGIEGGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A D+S+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E VVQ+ L   P    +   +    + ID+ M      ++ + P
Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLADHPDFALVPARDVLAEQRIDLEMGD----YLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|261379936|ref|ZP_05984509.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           subflava NJ9703]
 gi|284797646|gb|EFC52993.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           subflava NJ9703]
          Length = 419

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 161/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   S +P+W  E+L+  + +E +L    +   P  +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTASELPQWLVEQLQQHWSEEEILTFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                +           F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKITLNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + + T+ +      Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSTETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   ELV           + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418


>gi|161870221|ref|YP_001599391.1| SUN-family protein [Neisseria meningitidis 053442]
 gi|161595774|gb|ABX73434.1| SUN-family protein [Neisseria meningitidis 053442]
          Length = 419

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 11  AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 64

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 65  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 105

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 106 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 165

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 166 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 225

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 226 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 285

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 286 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 345

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 346 KPQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKVDLDTGKYLRL 401

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 402 --------DSARHQTDGFFAAVLQRK 419


>gi|148558426|ref|YP_001257373.1| putative sun protein [Brucella ovis ATCC 25840]
 gi|161620430|ref|YP_001594316.1| Fmu (Sun) domain-containing protein [Brucella canis ATCC 23365]
 gi|225628803|ref|ZP_03786837.1| sun protein [Brucella ceti str. Cudo]
 gi|254699632|ref|ZP_05161460.1| Fmu (Sun) domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|254702755|ref|ZP_05164583.1| Fmu (Sun) domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|254706110|ref|ZP_05167938.1| Fmu (Sun) domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|254711590|ref|ZP_05173401.1| Fmu (Sun) domain-containing protein [Brucella pinnipedialis B2/94]
 gi|254712187|ref|ZP_05173998.1| Fmu (Sun) domain-containing protein [Brucella ceti M644/93/1]
 gi|254715257|ref|ZP_05177068.1| Fmu (Sun) domain-containing protein [Brucella ceti M13/05/1]
 gi|256015140|ref|YP_003105149.1| sun protein, putative [Brucella microti CCM 4915]
 gi|256029774|ref|ZP_05443388.1| Fmu (Sun) domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|256059422|ref|ZP_05449624.1| Fmu (Sun) domain-containing protein [Brucella neotomae 5K33]
 gi|260167120|ref|ZP_05753931.1| sun protein, putative [Brucella sp. F5/99]
 gi|260568338|ref|ZP_05838807.1| hypothetical protein BAVG_2454 [Brucella suis bv. 4 str. 40]
 gi|261216983|ref|ZP_05931264.1| fmu domain-containing protein [Brucella ceti M13/05/1]
 gi|261313548|ref|ZP_05952745.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|261319213|ref|ZP_05958410.1| fmu domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261319853|ref|ZP_05959050.1| fmu domain-containing protein [Brucella ceti M644/93/1]
 gi|261323388|ref|ZP_05962585.1| fmu domain-containing protein [Brucella neotomae 5K33]
 gi|261750096|ref|ZP_05993805.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261753350|ref|ZP_05997059.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|261756519|ref|ZP_06000228.1| hypothetical protein BATG_00367 [Brucella sp. F5/99]
 gi|265986786|ref|ZP_06099343.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|148369711|gb|ABQ62583.1| putative sun protein [Brucella ovis ATCC 25840]
 gi|161337241|gb|ABX63545.1| Fmu (Sun) domain protein [Brucella canis ATCC 23365]
 gi|225616649|gb|EEH13697.1| sun protein [Brucella ceti str. Cudo]
 gi|255997800|gb|ACU49487.1| sun protein, putative [Brucella microti CCM 4915]
 gi|260155003|gb|EEW90084.1| hypothetical protein BAVG_2454 [Brucella suis bv. 4 str. 40]
 gi|260922072|gb|EEX88640.1| fmu domain-containing protein [Brucella ceti M13/05/1]
 gi|261292543|gb|EEX96039.1| fmu domain-containing protein [Brucella ceti M644/93/1]
 gi|261298436|gb|EEY01933.1| fmu domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261299368|gb|EEY02865.1| fmu domain-containing protein [Brucella neotomae 5K33]
 gi|261302574|gb|EEY06071.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|261736503|gb|EEY24499.1| hypothetical protein BATG_00367 [Brucella sp. F5/99]
 gi|261739849|gb|EEY27775.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261743103|gb|EEY31029.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|264658983|gb|EEZ29244.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1]
          Length = 429

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|319637890|ref|ZP_07992656.1| SUN-family protein [Neisseria mucosa C102]
 gi|317401045|gb|EFV81700.1| SUN-family protein [Neisseria mucosa C102]
          Length = 419

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +                 +   + L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKGL---------LDEEETAFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW-- 189
              K E    +   + +P+W  E+L+  + +E +L    +   P  +D+ V         
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILTFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 190 ------AHKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
                 A   +A   P     ++   + ++     F +G   VQD  + +   L G    
Sbjct: 165 ILPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILNAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   ELV           + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418


>gi|254691228|ref|ZP_05154482.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv.
           6 str. 870]
 gi|256256415|ref|ZP_05461951.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv.
           9 str. C68]
 gi|260756831|ref|ZP_05869179.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260882647|ref|ZP_05894261.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|297249775|ref|ZP_06933476.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella abortus bv.
           5 str. B3196]
 gi|260676939|gb|EEX63760.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260872175|gb|EEX79244.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|297173644|gb|EFH33008.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella abortus bv.
           5 str. B3196]
          Length = 429

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D    RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAEHARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLGELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|62317725|ref|YP_223578.1| Sun family protein [Brucella abortus bv. 1 str. 9-941]
 gi|83269708|ref|YP_418999.1| hypothetical protein BAB2_0845 [Brucella melitensis biovar Abortus
           2308]
 gi|189022980|ref|YP_001932721.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus S19]
 gi|237817268|ref|ZP_04596260.1| Sun family protein [Brucella abortus str. 2308 A]
 gi|254699015|ref|ZP_05160843.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254732462|ref|ZP_05191040.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv.
           4 str. 292]
 gi|260544966|ref|ZP_05820787.1| hypothetical protein BAUG_0844 [Brucella abortus NCTC 8038]
 gi|260760262|ref|ZP_05872610.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260763501|ref|ZP_05875833.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|62197918|gb|AAX76217.1| hypothetical sun protein [Brucella abortus bv. 1 str. 9-941]
 gi|82939982|emb|CAJ13011.1| SAM (and some other nucleotide) binding motif:Bacterial
           Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella melitensis
           biovar Abortus 2308]
 gi|189021554|gb|ACD74275.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus S19]
 gi|237788081|gb|EEP62297.1| Sun family protein [Brucella abortus str. 2308 A]
 gi|260098237|gb|EEW82111.1| hypothetical protein BAUG_0844 [Brucella abortus NCTC 8038]
 gi|260670580|gb|EEX57520.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260673922|gb|EEX60743.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
          Length = 429

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D    RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAEHARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|171319738|ref|ZP_02908826.1| Fmu (Sun) domain protein [Burkholderia ambifaria MEX-5]
 gi|171095010|gb|EDT40033.1| Fmu (Sun) domain protein [Burkholderia ambifaria MEX-5]
          Length = 420

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/446 (22%), Positives = 160/446 (35%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFTGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q L                       + F     +       
Sbjct: 72  PARRLT-------LLGLMQTL------------------GRNALKPFVSDTEAAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +   + +P+W  + L   +  E +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRVRTNLPDWIYQALSARFDAEELAQLAAALNYPAPLDLRANAQKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +V  P       F EG   VQD  + +   L        
Sbjct: 167 DALRAEGIDAGETPFAPQGVRVVGKPALTRLQLFQEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLTKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSIEELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P  V    L  A     D  +A+    ++ + P
Sbjct: 347 GGRLVYATCSVLHAENEAIVEQFLADHPEFV----LVPAQQVLADQRIAIETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|240113069|ref|ZP_04727559.1| putative SUN-family protein [Neisseria gonorrhoeae MS11]
 gi|268599155|ref|ZP_06133322.1| SUN-family protein [Neisseria gonorrhoeae MS11]
 gi|268583286|gb|EEZ47962.1| SUN-family protein [Neisseria gonorrhoeae MS11]
          Length = 418

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 162/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   +       L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPADAVLSAYFRKHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +        +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFFGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQ   + +   L G    
Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQGEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D+ ++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIVEKRLANLKPRMTRAGLTNIHPERIGSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + + K    Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  +++ L   P   E  P+N A     ++ + L    ++R+
Sbjct: 345 KPQGCLVYATCSVLPEENELQIKRFLSEHP---EFEPVNCAEL-LQNLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418


>gi|325204344|gb|ADY99797.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           meningitidis M01-240355]
          Length = 418

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEEIEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N       ++ + L    ++R+
Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCVEL-LQNLKIDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418


>gi|159037486|ref|YP_001536739.1| Fmu (Sun) domain-containing protein [Salinispora arenicola CNS-205]
 gi|157916321|gb|ABV97748.1| Fmu (Sun) domain protein [Salinispora arenicola CNS-205]
          Length = 508

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/449 (22%), Positives = 156/449 (34%), Gaps = 44/449 (9%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           R       +L     D     L  RD      +   TLR L  +DA+L       + R  
Sbjct: 75  RDDAYANLVLPSILRDV---GLVGRDAAFATELTYGTLRHLGTLDAILTDAAGREVARID 131

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             ++  LR+   Q+L+  V  +A V   V+  +            N++LR V+    E  
Sbjct: 132 PPVRDALRLGAYQLLHTRVPAHAAVSSTVDLVRSV--GPGATGFANAVLREVTGRDAEAW 189

Query: 140 Q-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDACISPLYIDLTVKF 184
                          +A     P+W         G +      +         + L  + 
Sbjct: 190 VARLAPPLETDPIGHLALAYSHPQWIVRAFAEALGGDLGETTRLLIENNERPAVHLCARP 249

Query: 185 ---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA----SIPVQLF 237
              D  T A ++           +     ++  LP   EG   VQD  +           
Sbjct: 250 GLADPVTLADEVGGAPGAFSPYAVYSGGGALGDLPALTEGRAHVQDEGSQLVAQALAVAA 309

Query: 238 GTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
               +   LDLCA PGGK     A     GA++TA++VS+ R   +R     L +     
Sbjct: 310 LDGPDGRWLDLCAGPGGKSGLLGAIAAQRGARLTAVEVSEHRARLVRQATHDLPVTVLHT 369

Query: 294 IEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                       +  FD VLVDAPC+  G++RR P+  W R   D+      QR+LL   
Sbjct: 370 DGRAVGSTPKLAEGHFDRVLVDAPCTGLGSLRRRPESRWRRQPSDLPALTRLQRELLAAA 429

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           +   + GG+V +  CS    ++   V +  R   +PV+ V       + +     L    
Sbjct: 430 LRAARSGGLVAYVTCSPHVVETHVTVTEAARRCGVPVDFVDARPLLPEGMP---GLGDGP 486

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +++ P           G D  F   LRR
Sbjct: 487 TVQLWPH--------RHGTDAMFLAVLRR 507


>gi|30248116|ref|NP_840186.1| SAM-binding motif-containing protein [Nitrosomonas europaea ATCC
           19718]
 gi|30180001|emb|CAD83996.1| SAM (and some other nucleotide) binding motif:NOL1/NOP2/sun f
           [Nitrosomonas europaea ATCC 19718]
          Length = 419

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/443 (21%), Positives = 161/443 (36%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            +  ++  +     LL   + D     L Q D+  +   V   LR    ++ +       
Sbjct: 14  AVRKILPLQAPADVLLRQFFQDH--HKLGQNDRGTIAEAVFGILRRRFFLEKLAGKATAR 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            L      L  L R    Q + L            E A   +E             +  +
Sbjct: 72  EL-----VLAYLTR---FQGMNLR-----------ELAPLIRETEIKWI-------QQIK 105

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
                 Q ++  +  PEW  E+L+ ++  E +L +      P  +D+ V       E   
Sbjct: 106 AVKLEEQPLSIRAEFPEWLVEKLQKYHSDEEILRLGQTLQQPAPLDIRVNSLLAKREEVL 165

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +         +   I   P       F  G   VQD  + +   L        
Sbjct: 166 AALEQQEIEAQPTPFSPVGIRITGKPAINRNALFLSGKIEVQDEGSQLLGFLLAPKRGEM 225

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CA  GGKT     L+ S  ++ A DVS++RL  L+  L R  L       +D+   
Sbjct: 226 VVDFCAGAGGKTLLLGALMHSRGRLYAFDVSEKRLNNLKPRLKRSGLSNIHPQRIDSERD 285

Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D V+VDAPCS  GT+RR+PD+ W +  + I +    Q  +L    + +KP
Sbjct: 286 AKLKRLAGKIDRVMVDAPCSGLGTLRRNPDLKWRQSPESIDELQKKQMAILTAAANLLKP 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CSL  ++++++V+  L + P    L        + I +              
Sbjct: 346 GGRLVYATCSLLPEENQQIVEHFLANHPQFSILHCDELLAQQKIHLPDT----------- 394

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
               ++  +    D FFA  L R
Sbjct: 395 GKFLQLSPLYHNTDSFFAAVLER 417


>gi|306840812|ref|ZP_07473559.1| Fmu (Sun) domain-containing protein [Brucella sp. BO2]
 gi|306289207|gb|EFM60456.1| Fmu (Sun) domain-containing protein [Brucella sp. BO2]
          Length = 429

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSIFW--- 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                   R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 63  --------RMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQGRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDIVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P       + D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVAQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|319941941|ref|ZP_08016262.1| fmu domain-containing protein [Sutterella wadsworthensis 3_1_45B]
 gi|319804594|gb|EFW01464.1| fmu domain-containing protein [Sutterella wadsworthensis 3_1_45B]
          Length = 491

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 97/445 (21%), Positives = 175/445 (39%), Gaps = 52/445 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             L  +++       L+ L +  +    +  RD+ L+   +   LR    + A +  V  
Sbjct: 80  RALKVILKFDGPADVLMKLFFKSNPQLGM--RDRGLIAEGIYDALRRYGTLRAAMRPVH- 136

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
              P +   L  L  ++                    Q   D  +          L+ V 
Sbjct: 137 ---PDRAPRLAALTVLA-------------------RQHGIDALSPSSIGSEEGPLKNVL 174

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV-KFDIETWAH 191
              +         + +P+W  + +E  Y   + L  +    +PL + + + K   E    
Sbjct: 175 AFDVSKAPAH-VQAELPQWLFDLIEAQYPDSQALYAAMKEGAPLDLRVNLLKATREEVLA 233

Query: 192 KLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +L    +      L      +         P + +G+  VQD  + +  +L        +
Sbjct: 234 ELAKNGVEAYPTPLSPDGVRLPTKPGLTRWPIYQDGLVDVQDEGSQLIARLLTPRRREMI 293

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMDA 298
            D CA  GGKT     L+ S   + A DV+++RL  L   + R  L     +    E D 
Sbjct: 294 CDFCAGAGGKTLALGALMRSTGSLYAFDVNEKRLAGLAPRMRRAGLSNVHPVAIKSEADP 353

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                   FD VLVDAPC+ +GT+RR+PD+ W    +++ +    Q+++L      VK G
Sbjct: 354 RVRRLANKFDRVLVDAPCTGSGTLRRNPDLKWRLSPEELDRINDIQKRVLESASRLVKKG 413

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK---SIDMAMALSPEGWIRI 415
           G +V++ CSL K+++++VV+  L   P    LVP+   + +     +       EG++++
Sbjct: 414 GRLVYATCSLLKRENQDVVEAFLAEHPGW-RLVPVKEVFEQQGIHFEPGQLERFEGYMQL 472

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P +        +  DGFFA  L+R
Sbjct: 473 LPHV--------NNTDGFFAAVLQR 489


>gi|294853353|ref|ZP_06794025.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella sp. NVSL
           07-0026]
 gi|294819008|gb|EFG36008.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella sp. NVSL
           07-0026]
          Length = 429

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKILAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|296136858|ref|YP_003644100.1| Fmu (Sun) domain protein [Thiomonas intermedia K12]
 gi|295796980|gb|ADG31770.1| Fmu (Sun) domain protein [Thiomonas intermedia K12]
          Length = 435

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 95/459 (20%), Positives = 164/459 (35%), Gaps = 63/459 (13%)

Query: 5   MNARLV---SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           M  R +   +  +L  ++R   +   +L   +       L + D+ ++   V   LR L 
Sbjct: 1   MKPRDLLYTARDVLRDMLRFDAAADAVLSRLFRAKPQ--LGKTDRQILADTVYQVLRHLR 58

Query: 62  RIDAVLDFVLISSLPRKKYSLQQL-----LRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                              + + +     LR+++                          
Sbjct: 59  L------------FQTLAATDESIGGAMELRLAI----------------LGWSGNAQSL 90

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           +   +       R+    +  +    A    +PEW    L+  YG E             
Sbjct: 91  HAALSP-EQLDWRKRLLAQDAMALPEAVRWSLPEWLAAALQANYGAEYPALAQAMLRPAP 149

Query: 177 -YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDA 228
             + + V+         + A +                    ++  L  F EG   VQD 
Sbjct: 150 LDLRVNVQKARREAVLDVFARLNLPAQPTPYSPWGVRLEGKPALQDLTVFREGWVEVQDE 209

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
            + +   L        V+D CA  GGKT     ++ S  ++ A DV+  RL KL+  L R
Sbjct: 210 GSQLLAVLLAPRRGEMVVDFCAGAGGKTLALGAMMRSTGRLYAFDVADYRLAKLKPRLLR 269

Query: 286 LHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
             L          E D          D VLVDAPCS  GT+RR+PD+ W +  +DI +  
Sbjct: 270 SGLSNVYPVAIAHERDERVKRLAGKVDRVLVDAPCSGLGTLRRNPDMKWRQKPEDIAELT 329

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L    + +KPGG +V++ CS+  +++  +V   L + P   E VP ++   +  
Sbjct: 330 TKQASILQSAATLLKPGGRLVYATCSVLPEENSGIVNAFLTAHP-DFERVPADTVLRQQG 388

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                L  +G +++ P+            DGF+A  L+R
Sbjct: 389 VDGEGLVTQGDLQLLPN--------RHATDGFYAAVLQR 419


>gi|332184460|gb|AEE26714.1| Ribosomal RNA small subunit methyltransferase B [Francisella cf.
           novicida 3523]
          Length = 426

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 104/448 (23%), Positives = 191/448 (42%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL  L       +    LS++D+  V+ +     R    ++
Sbjct: 1   MNTRAIAAKAILEILDNKYSLLTLEQKLLSHN----LSEQDKSFVKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +    L             L+ + V QI  +    YA ++ +V  A +D +     KLV
Sbjct: 57  KIASLYLKQKTKITAKV---LIMLGVLQIFEVKQPYYATINESVS-ACKDLKIIWAKKLV 112

Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R   ++  + +      +P+W  + L   Y KE +         + ++I L 
Sbjct: 113 NGILREITRNINDITGIYKQNKAIDMPKWLSDTLIKQYPKEYLEIAQAINTKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QAKDTKKVLEYFDKNNIAYSFTNLKDCIKLGQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               N+  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL R       +I
Sbjct: 233 IKANNDDKILDACAAPGGKTSHILESAPQADITAIDIIDKRLELLRENLARLSKNNNVNI 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTLPLSG-KFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILKKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +I P   +         DGF+   L++
Sbjct: 403 YQILPSQQDG--------DGFYYCLLKK 422


>gi|188993323|ref|YP_001905333.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735083|emb|CAP53295.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas
           campestris pv. campestris]
          Length = 436

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 184/437 (42%), Gaps = 39/437 (8%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V  +  SL   L       +      RD+ LV AI    LR  P  D  L   L   LP 
Sbjct: 23  VFDQGRSLKAELTAALPGVS----DPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPP 78

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           +   L+ LL    AQ+  L +  +A +   VE  +     R  A +VN++LRR  RE   
Sbjct: 79  RDAELKALLMAGFAQLDVLQLPAHAALSATVEACRALGRPRQ-AGMVNAVLRRAQREGFP 137

Query: 138 LLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDLT-VKFDIETWAHKLNA 195
            +   A  +  P W +++L   +  +   + +  A ++P+++ +   +     +  +L  
Sbjct: 138 AV---ADDAGWPSWLRKQLRADWGDQAEAIFVESARMAPMWLRVQRARVSPAEYVARLAE 194

Query: 196 VMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
             +      +       +    +  LPGFA+G   VQD SA              VLD C
Sbjct: 195 QGITAHTDPVLADAVRLDTAVPVSQLPGFAQGDVSVQDGSAQQVADALALAPAARVLDAC 254

Query: 250 AAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE----DIIEMDAFDYCP 303
           AAPGGK A         ++TALDV  RRLE++R  + R               D   +  
Sbjct: 255 AAPGGKAAHLLERHPQLQLTALDVDARRLERVRQTVQRTAPDRTVRLHAADAADTAAWWD 314

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +LL      ++PGG +++
Sbjct: 315 GQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARLLDACWRTLRPGGQLLY 374

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           + CSL K++++  ++  L+ +    +  PL + +  +                     + 
Sbjct: 375 TTCSLLKRENQMQIEAFLQRT-ADAQAQPLGAQFGHAAGAG----------------RQR 417

Query: 424 DGVSSGMDGFFAVALRR 440
                  DGFF   L +
Sbjct: 418 FAGEQQCDGFFYALLLK 434


>gi|59801095|ref|YP_207807.1| putative SUN-family protein [Neisseria gonorrhoeae FA 1090]
 gi|194098801|ref|YP_002001864.1| putative SUN-family protein [Neisseria gonorrhoeae NCCP11945]
 gi|239999092|ref|ZP_04719016.1| putative SUN-family protein [Neisseria gonorrhoeae 35/02]
 gi|240014001|ref|ZP_04720914.1| putative SUN-family protein [Neisseria gonorrhoeae DGI18]
 gi|240016442|ref|ZP_04722982.1| putative SUN-family protein [Neisseria gonorrhoeae FA6140]
 gi|240080561|ref|ZP_04725104.1| putative SUN-family protein [Neisseria gonorrhoeae FA19]
 gi|240115825|ref|ZP_04729887.1| putative SUN-family protein [Neisseria gonorrhoeae PID18]
 gi|240118123|ref|ZP_04732185.1| putative SUN-family protein [Neisseria gonorrhoeae PID1]
 gi|240121567|ref|ZP_04734529.1| putative SUN-family protein [Neisseria gonorrhoeae PID24-1]
 gi|240123672|ref|ZP_04736628.1| putative SUN-family protein [Neisseria gonorrhoeae PID332]
 gi|240125862|ref|ZP_04738748.1| putative SUN-family protein [Neisseria gonorrhoeae SK-92-679]
 gi|240128372|ref|ZP_04741033.1| putative SUN-family protein [Neisseria gonorrhoeae SK-93-1035]
 gi|254493870|ref|ZP_05107041.1| SUN-family protein [Neisseria gonorrhoeae 1291]
 gi|260440359|ref|ZP_05794175.1| putative SUN-family protein [Neisseria gonorrhoeae DGI2]
 gi|268594930|ref|ZP_06129097.1| SUN-family protein [Neisseria gonorrhoeae 35/02]
 gi|268596691|ref|ZP_06130858.1| SUN-family protein [Neisseria gonorrhoeae FA19]
 gi|268601501|ref|ZP_06135668.1| SUN-family protein [Neisseria gonorrhoeae PID18]
 gi|268603839|ref|ZP_06138006.1| SUN-family protein [Neisseria gonorrhoeae PID1]
 gi|268682303|ref|ZP_06149165.1| SUN-family protein [Neisseria gonorrhoeae PID332]
 gi|268684460|ref|ZP_06151322.1| SUN-family protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686770|ref|ZP_06153632.1| SUN-family protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043654|ref|ZP_06569370.1| SUN-family protein [Neisseria gonorrhoeae DGI2]
 gi|293398957|ref|ZP_06643122.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           gonorrhoeae F62]
 gi|59717990|gb|AAW89395.1| putative SUN-family protein [Neisseria gonorrhoeae FA 1090]
 gi|193934091|gb|ACF29915.1| putative SUN-family protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512910|gb|EEH62255.1| SUN-family protein [Neisseria gonorrhoeae 1291]
 gi|268548319|gb|EEZ43737.1| SUN-family protein [Neisseria gonorrhoeae 35/02]
 gi|268550479|gb|EEZ45498.1| SUN-family protein [Neisseria gonorrhoeae FA19]
 gi|268585632|gb|EEZ50308.1| SUN-family protein [Neisseria gonorrhoeae PID18]
 gi|268587970|gb|EEZ52646.1| SUN-family protein [Neisseria gonorrhoeae PID1]
 gi|268622587|gb|EEZ54987.1| SUN-family protein [Neisseria gonorrhoeae PID332]
 gi|268624744|gb|EEZ57144.1| SUN-family protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627054|gb|EEZ59454.1| SUN-family protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012117|gb|EFE04106.1| SUN-family protein [Neisseria gonorrhoeae DGI2]
 gi|291610371|gb|EFF39481.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           gonorrhoeae F62]
 gi|317164383|gb|ADV07924.1| putative SUN-family protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 418

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 163/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   +       L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPADAVLSAYFRKHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +        +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFFGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQ   + +   L G    
Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQGEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + + K    Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  +++ L   P   E  P+N A     ++ + L    ++R+
Sbjct: 345 KPQGCLVYATCSVLPEENELQIKRFLSEHP---EFEPVNCAEL-LQNLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418


>gi|209517450|ref|ZP_03266291.1| Fmu (Sun) domain protein [Burkholderia sp. H160]
 gi|209502104|gb|EEA02119.1| Fmu (Sun) domain protein [Burkholderia sp. H160]
          Length = 419

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 158/443 (35%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V+R            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLRLNGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEFAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     +       
Sbjct: 72  PARRMA-------LLGLMQ------------------TVGRSALKPFVTEAEATWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +     +P+W  + L   +    +  ++ A   P  +DL         +   
Sbjct: 107 KIDPESLPLRIRLNLPDWICQALGTRFEGAELAQLAAALNYPAPLDLRANPIKASRDDVL 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L+   +  G      L   +        L  F +G   VQD  + +   L        
Sbjct: 167 GALSKAGIEAGATPFAPLGVRVVGKPALTKLDAFQQGWLEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT      + S  ++ A D+S+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + I + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESIAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +VQ+ L   P    LVP++    +     + L    ++ + P
Sbjct: 347 GGRLVYATCSILEAENEAIVQQFLADHP-DFALVPVHEVLAE---QRIELEMGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHATDGFFAAVLER 417


>gi|116622296|ref|YP_824452.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076]
 gi|116225458|gb|ABJ84167.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076]
          Length = 360

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 160/435 (36%), Gaps = 87/435 (20%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR+ +  +L  V     +   LL           L  RD  L   IV   LR+  ++D 
Sbjct: 5   AARIAAFDILQLVESGGYASDLLLART------ADLDSRDAGLASEIVFGVLRYRAQLDF 58

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++      S  +    ++  LR+++ QI YL  V  +A V  +VE  KR ++    A  V
Sbjct: 59  LIIHYAGRS-RKLDPEVRTALRMAIYQIRYLERVPPHAAVKESVELVKRARKT-SAAGFV 116

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           N+IL R       +          PEW   R E  YG+   L I+ A +      + +  
Sbjct: 117 NAIL-RQVDRDPVIWPAREIEYSCPEWLLARWEREYGETAALGIAQAALREPEKYVRIGT 175

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             E                                      QD  A   V L        
Sbjct: 176 AGE------------------------------------RTQDIGAQSIVPLLDLQPGQR 199

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
            LDLCAAPG KTAQ + +G +  A D+   RL +L+       L    ++          
Sbjct: 200 FLDLCAAPGNKTAQALEAGVQAVACDLHFHRLVQLKP------LTPNLVVVDGTRPLPFA 253

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             FD +LVDAPCS TGT+ R+P++ W     D+      Q  LL   +S + PGG +V+S
Sbjct: 254 ARFDRILVDAPCSGTGTLGRNPEIKWRLTPADLADLHARQSALLANALSLLAPGGTLVYS 313

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CSL+ +++E V                                    ++   +  E+  
Sbjct: 314 TCSLEPEENEGV-----------------------------------AVQARVERTEQRL 338

Query: 425 GVSSGMDGFFAVALR 439
                 DGF+A  ++
Sbjct: 339 PGREAGDGFYAAVIK 353


>gi|212225119|ref|YP_002308355.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
 gi|212010076|gb|ACJ17458.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
          Length = 450

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 182/455 (40%), Gaps = 38/455 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            V +  L  V  + +S    L+  +   A +   +  + L  A V    ++  +ID +++
Sbjct: 11  EVVADALMLVEERELSSKHALERVFKKVAGKDREKA-RGLAHAYVFEIEKWRAKIDFIIN 69

Query: 69  FVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL  S +      L  LLR+   +I +  V      D  +   K    +   AK VN++
Sbjct: 70  SVLKGSTVEDLDPYLANLLRIGTFEIHFRKVPPAIATDSIIRVVKGHF-DFSRAKFVNAL 128

Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +  + +             + ++ ++     P W+ E     +G +  + +  +      
Sbjct: 129 MHEIEKFDVERALKRLKERDRIEWLSVRFSHPRWYVEYAVELFGYDEAVRLLLSNNKAQR 188

Query: 178 IDLTVKF------DIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             +           +  +  +     A+      +++ E    +  L  + +G + +QD 
Sbjct: 189 YYVRANTLKTDVDSLRDYLEENGVRTALTPLPDVLKILEYKTPVTRLNWYKQGKFVIQDL 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           +++    +        VLDL AAPG KT      + +  ++ A+D S  RL +++  +  
Sbjct: 249 ASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMRMKEKMKL 308

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L +    ++  D   +  K+ FD +++DAPCSS+GT R+ P+V W  D   I +    QR
Sbjct: 309 LGIKNVKLVHADGQSFRDKEKFDKIILDAPCSSSGTYRQFPEVKWRFDEKKIKRIINVQR 368

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      ++ GG + +S CS+   + EE V            L  +N    + ID   
Sbjct: 369 NMLRNAHENLRDGGEMTYSTCSIRIDEDEENV------------LFAINRVGLELIDYPF 416

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +    G++ I  D + +        + FF   L++
Sbjct: 417 SWGDRGFLEI-GDKVFRAWTHRHDCNSFFIAKLKK 450


>gi|220919194|ref|YP_002494498.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957048|gb|ACL67432.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 455

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 122/458 (26%), Positives = 178/458 (38%), Gaps = 44/458 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +L  V       +    L+    A   L  R+  L   +V  TLR    +DA 
Sbjct: 12  ARGIAFDVLRRVEEGGAYASR--ALDAALGAAGALDPREAGLATELVYGTLRRALALDAA 69

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L      +L     + +  LR+   Q+L L    +A V   V  AK     R  A  VN+
Sbjct: 70  LAPHSRRALAELDPAARVALRLGAYQLLVLGTPAHAAVGETVALAKAVDHGR-AAGYVNA 128

Query: 127 ILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +LR +SR                 +A    +P W  E    + G    LA++ A  +P  
Sbjct: 129 VLRSLSRAARFPDPPALEADPAGHVAAAEALPRWVAEEWVGWLGAGEALALARAMNAPAP 188

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLP----GFAEGVWWVQDA 228
           + +    D E    +  A  L                 S+  L     G    V      
Sbjct: 189 LCVR-TPDREALLARARAAGLAAAPAARAPGGVVLTGASVGELARAAGGVPFQVQDEAAQ 247

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285
             ++            VLD CAAPGGK   L      GA+V A+++  R+ ++L     R
Sbjct: 248 LVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAIELHPRKADELAREAAR 307

Query: 286 LHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             L A  ++  DA    P      FDAVLVDAPC+  GT+RRHP++   R   D+ + A 
Sbjct: 308 RGLPAVRVVCADAGKPIPGLEPGSFDAVLVDAPCAGLGTLRRHPELKLRRAPGDLPRMAA 367

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QRK+ L    + +PG  VV+S CSL + +  EVV+ +L          P  + +     
Sbjct: 368 LQRKIALNAARYARPGAPVVYSICSLSRAEGPEVVETLL---GEGFRRAPPPAGFP---- 420

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A  L   G +   P           G DGF+A  L R
Sbjct: 421 -ADVLDARGDLLTLPS--------RHGTDGFYAARLVR 449


>gi|294786452|ref|ZP_06751706.1| Sun protein [Parascardovia denticolens F0305]
 gi|315226022|ref|ZP_07867810.1| ribosomal RNA small subunit methyltransferase B [Parascardovia
           denticolens DSM 10105]
 gi|294485285|gb|EFG32919.1| Sun protein [Parascardovia denticolens F0305]
 gi|315120154|gb|EFT83286.1| ribosomal RNA small subunit methyltransferase B [Parascardovia
           denticolens DSM 10105]
          Length = 540

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 109/537 (20%), Positives = 185/537 (34%), Gaps = 108/537 (20%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K  ++ R ++   L  V R +     L+  E    +   L  RD+  V  +V  TLR+  
Sbjct: 16  KKDLSPRSIAWKSLIRVHRNQAFSNLLVPQELSSFSPDELGGRDRAAVTDMVYGTLRWQG 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE-NRHF 120
            +DAV+  V    L R +  +    R+ V Q+L+L   DYA V   V   +R    +   
Sbjct: 76  FLDAVIADVSFRPLKRIEIPVLDAARLGVYQLLFLGSPDYAAVSQTVGLLRRGGRSDARA 135

Query: 121 AKLVNSILRRVSREKIELLQ--------------RIAGISIIPEWFKERLENFYG----- 161
           A  VN++LR+V+    +  +              R+A     P W   +L   +      
Sbjct: 136 AGFVNALLRKVATRSRQEWEAVLTSRIPKADSDARLALRYSHPNWVVGQLRRSWEAAAYE 195

Query: 162 ---KERVLAISDACISPLYIDLTVKF---DIETWAHKLNAV------------------- 196
               +++ A+  A   P  + L  +      E    +L  +                   
Sbjct: 196 DRADDQLAALLSADNEPADVTLCARPGLISREELIAQLEGISAGRAGSDGQAVPGRIVWG 255

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS------------------------- 231
                   L+    +   +P   +G+  V+D  +                          
Sbjct: 256 ETSFSPYGLRIKGVNPHDIPAVRQGLAGVEDEGSQLAALAVADVDKAAGFPTDLPTDFPV 315

Query: 232 -----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG---------AKVTALDVSKRRLE 277
                    L  +      LD+CA PGGKTA L               + A + +  R +
Sbjct: 316 DLPADSQSDLTTSRQAERWLDMCAGPGGKTALLAACALSRSNSGRLTTLLANEPTHHRAD 375

Query: 278 KLRCNLDRLHLYA----------EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325
            +R NL      A          E + E D           FD +LVDAPCS  G++RR 
Sbjct: 376 LVRDNLCAFTGMAPASSAAPSIIEGVEEKDGRQLGDLYPQAFDRILVDAPCSGLGSLRRR 435

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           P+  W +  ++I   +  Q +LL      + PGG + +  CS   +++  VV   L    
Sbjct: 436 PESRWRKKPEEIASLSLLQGQLLDSAYEALAPGGYLAYVTCSPVLEETRLVVDAFLGRHQ 495

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             + L     A+     +  A    G +++   +         G D  F   +R+ +
Sbjct: 496 DLIRL-DARQAFPSGTPLPAAP---GDVQLFEQV--------HGTDQMFISLMRKAV 540


>gi|308389468|gb|ADO31788.1| SUN-family protein [Neisseria meningitidis alpha710]
          Length = 418

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEEIEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418


>gi|115352607|ref|YP_774446.1| Fmu (Sun) domain-containing protein [Burkholderia ambifaria AMMD]
 gi|170697696|ref|ZP_02888784.1| Fmu (Sun) domain protein [Burkholderia ambifaria IOP40-10]
 gi|172061469|ref|YP_001809121.1| Fmu (Sun) domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|115282595|gb|ABI88112.1| Fmu (Sun) domain protein [Burkholderia ambifaria AMMD]
 gi|170137444|gb|EDT05684.1| Fmu (Sun) domain protein [Burkholderia ambifaria IOP40-10]
 gi|171993986|gb|ACB64905.1| Fmu (Sun) domain protein [Burkholderia ambifaria MC40-6]
          Length = 420

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 159/446 (35%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFTGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q L                       + F     +       
Sbjct: 72  PARRLT-------LLGLMQTL------------------GRNALKPFVSDTEAAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +   + +P+W  + L   +  E +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRVRTNLPDWIYQALSARFDAEELAQLAAALNYPAPLDLRANAQKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +V  P       F EG   VQD  + +   L        
Sbjct: 167 DALRAEGIDAGETPFAPQGVRVVGKPALTRLQVFQEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLTKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSIEELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P  V    L  A     D  +A+    ++ + P
Sbjct: 347 GGRLVYATCSVLHAENEAIVEQFLADHPEFV----LVPAQQVLADQRIAIETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|309378839|emb|CBX22544.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 419

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 11  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 64

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 65  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 105

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 106 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQAAPLDIRVNTLKGKRDK 165

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 166 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 225

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 226 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 285

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + + K    Q  +L      V
Sbjct: 286 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 345

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   ELV           + + L    ++R+
Sbjct: 346 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 401

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 402 --------NSGEHQTDGFFAAVLQRK 419


>gi|332702662|ref|ZP_08422750.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552811|gb|EGJ49855.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 433

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 158/422 (37%), Gaps = 29/422 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   +S  +     +   LD +      R L+ RD  L   +    LR   R+DA
Sbjct: 8   PARRAALEAVSKSLNTSTDVQAALDTQITA---RRLAPRDIGLATELTYGYLRLKSRLDA 64

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +LD  L  +  +    ++ +L ++  ++ YLD V  YA V+ AV+  K D   +  +K+ 
Sbjct: 65  LLDHFL-RAPGKLPARVRLILGLAAYELSYLDRVPAYASVNWAVDAVKADFG-QGLSKMA 122

Query: 125 NSILRR-------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           N +LR                +   +    ++     P W  E      G+E  LA+  A
Sbjct: 123 NGVLRSVERLGADALNPDFFRQGSRDETGFLSRYYSCPRWIVELWLGERGREAALALLQA 182

Query: 172 CISPLYIDLTVKFD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
            I P  + L V           +  A K   +      +        +         V  
Sbjct: 183 QIVPPAVSLRVNAAKSGAQALRDELAAKPECLSANGWTLAFAPGSRPVEDSVLIQGLVSR 242

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNL 283
              AS      L        V D C   GGK   LI  G   V A DV+  RL +L    
Sbjct: 243 QSAASQLALAALEPAGWPTPVWDCCCGRGGKALSLIEKGIAPVWASDVTFARLRQLPVES 302

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVL-VDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            RL L A       A    P       + VDAPCS  G + R PD  W R   D+     
Sbjct: 303 RRLGLPAVSTFLARADAPAPLAAQPGTVLVDAPCSGLGVLSRRPDSKWKRSPTDLPGLTA 362

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP-LNSAYWKSI 401
            Q  +L   ++ ++PGG + +  C++++ ++EE ++ +LR       L+   +   W   
Sbjct: 363 LQSGILEHALAALRPGGRLAYITCTVNRAENEERIEMLLREHSGARLLLSGASPLDWPLG 422

Query: 402 DM 403
           + 
Sbjct: 423 EF 424


>gi|242277628|ref|YP_002989757.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638]
 gi|242120522|gb|ACS78218.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638]
          Length = 427

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 152/414 (36%), Gaps = 34/414 (8%)

Query: 1   MKSGMN---ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK   +    R V+   ++  +        +LD     +    L  RD+  V  I+   L
Sbjct: 1   MKKTNSLPGPRGVAYECVTRSLDGGADAQAVLDNALTAAK---LDGRDRGFVTEILYGYL 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
           R   R+ +VL+  L          + ++L ++  +IL++DV  YA VD  V+ AKR    
Sbjct: 58  RMRLRLQSVLNCFLSRP-DGLPAPILRVLGMAAYEILHMDVPAYASVDWGVDSAKRLSRG 116

Query: 118 RHFAKLVNSILRR-------------VSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
           +    L N++LR+               R     ++ ++     PEW  E   + YG+++
Sbjct: 117 K-LGGLANAVLRKVARLAEDGADEDFFRRNSDSEIEFLSAYYSCPEWIVELWVDSYGRDK 175

Query: 165 VLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP---TGGIRLKELPESIVSLPGF 218
                +A I P      +     + +  A +L          G            +  G 
Sbjct: 176 AEQYLEAQICPPAAGFVLDTKSNEAKAAAEQLLEENDYIASDGQAFAFYSGYWPQAFNGL 235

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGA-KVTALDVSKRRL 276
            E     Q  +A   + + G     +   D C+  GGK+  L       + A D   RRL
Sbjct: 236 KES-VTRQSYAAREALSVLGPSEWPTPVWDGCSGRGGKSRFLHSKNISPIIASDPHARRL 294

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
             L+    R                  K+     L+D PCS  G + R PD  + R  +D
Sbjct: 295 AALK----REVPSVASFRASAINPPLAKESIGTALLDVPCSGLGVLSRRPDTKFKRTPED 350

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           +      Q ++L      ++ GG + +  C+L+  ++E  +   L+     V L
Sbjct: 351 VDSLVHLQSRILDNTWETIRKGGRLAYITCTLNPAENEGQIGAFLKRHKDAVPL 404


>gi|313668485|ref|YP_004048769.1| SUN-family protein [Neisseria lactamica ST-640]
 gi|313005947|emb|CBN87404.1| SUN-family protein [Neisseria lactamica 020-06]
          Length = 418

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +   P  +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + + ++ +      Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSSETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K  G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 345 KTQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LAGLKIDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418


>gi|306845652|ref|ZP_07478221.1| Fmu (Sun) domain-containing protein [Brucella sp. BO1]
 gi|306273973|gb|EFM55800.1| Fmu (Sun) domain-containing protein [Brucella sp. BO1]
          Length = 429

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 157/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER +    A  +   +DL V     T
Sbjct: 107 RAAWQNRDLATAPAHIQADVPEWCIPSLEELFG-ERWVPEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q  +L    
Sbjct: 286 VYGGLDELEPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQHDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTCQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|332975438|gb|EGK12330.1| RsmB/NOP family methyltransferase [Kingella kingae ATCC 23330]
          Length = 421

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 168/447 (37%), Gaps = 51/447 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++        +L     D+    L + D+  +       +R   +    +   L
Sbjct: 10  ATVLAQMLTFADPADVVLSNYLRDNR--KLGRADRHEIAETAFAAIRHYQK----IAAAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +    D   + F       L  +
Sbjct: 64  RRPHVQARKAALAALILG----------RSVNISQIEDLLNEDDNEKEF-------LSSL 106

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +PEW  E L+     E++L    +   P  +D+ V       + 
Sbjct: 107 KSRKTEFASSLHTAAELPEWLIEVLQKHDSDEQILQFGRSVAQPAPLDIRVNTLNGKRDK 166

Query: 189 WAHKL-----NAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
              +L     NA+  P     ++   +  +   P F +G   VQD  + +  QL G    
Sbjct: 167 ILAQLQTEFPNAIATPFAPHGIRFNDKPALNKHPLFLDGTIEVQDEGSQLLAQLVGAKRG 226

Query: 243 LSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGKT      + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 227 EIIVDFCAGAGGKTLALGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPEKIGSE 286

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + +      Q+ ++      V
Sbjct: 287 HDPRIARLHGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETLANLLKQQQSIVQAASQLV 346

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V++ CS+  +++E  V + L+++P    L        + ID+            
Sbjct: 347 KSGGRLVYATCSVLPEENEMQVAQFLQNNPDFELLNCAELLATQKIDLDT---------- 396

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 ++D      DGFFA  L+R  
Sbjct: 397 --GEFLRMDTAVHNTDGFFAAVLQRKA 421


>gi|332670476|ref|YP_004453484.1| Fmu (Sun) domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332339514|gb|AEE46097.1| Fmu (Sun) domain protein [Cellulomonas fimi ATCC 484]
          Length = 568

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 108/523 (20%), Positives = 169/523 (32%), Gaps = 94/523 (17%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +SG  AR  +   L  V         +L     +   R +  RD      +   TLR   
Sbjct: 58  RSGDAARRAAFDTLRAVAEGDAYANLVLPPMLRE---RGVQGRDAAFATELAYGTLRLRG 114

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           R DAV++      + R    +  LLR+   Q+L + V  +A V   V  A+        A
Sbjct: 115 RYDAVVELAAARPVDRIDAPVLDLLRLGTHQLLGMRVPAHAAVSETVGLAREVTG-AGPA 173

Query: 122 KLVNSILRRVSREKIELLQRI----------------AGISIIPEWFKERLENF-----Y 160
           + VN++LR VSRE     +                  A +   P W    L         
Sbjct: 174 QFVNAVLRAVSREPWPRWEERIGDAADPDGDDPVARLAVVGSHPAWVVRALRESLVGNGR 233

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG------------------- 201
             + +  + +A  +   + L  +  + T A    A     G                   
Sbjct: 234 AADEITGLLEADNTAPLVTLVARPGLATTAELSPAASSAGGGVPDGPAPTGAAGTTAGTT 293

Query: 202 ----------------------------GIRLKELPESIVSLPGFAEGVWWVQDASAS-- 231
                                          L        +LP   E    VQD  +   
Sbjct: 294 GTTAGATPGAPEGRPAATPGATARGTLSPTALVLPGGDPAALPAVREARAGVQDDGSQLV 353

Query: 232 --IPVQLFGTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVSKRRLEKLRCN--- 282
                       +   LDLCA P        A     GA++ A +V   R   ++ +   
Sbjct: 354 ALALAAAPLDGPDDRWLDLCAGPGGKAALLGALAAQRGARLVANEVQPHRARLVQQSLRA 413

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           + R  +      +    D      FD V+VDAPC+  G +RR P+  W R   D+     
Sbjct: 414 VPREAVEDVRTGDGRDVDQQEPGAFDRVMVDAPCTGLGALRRRPESRWRRTPADLAPLTA 473

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIPVELVPLNSAYWK 399
            QR+LL   +  V+ GG+V +  CS    ++  VVQ VLR    + + VE +   +    
Sbjct: 474 LQRELLASALHAVRVGGVVAYVTCSPHLAETRLVVQDVLRAVGRAGLTVERLDTPAVVRA 533

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                + L     +++ P +         G D      LRR  
Sbjct: 534 VATRDVELPDRDDVQLWPHV--------HGTDAMHLTLLRRTA 568


>gi|116788313|gb|ABK24833.1| unknown [Picea sitchensis]
          Length = 515

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 165/426 (38%), Gaps = 50/426 (11%)

Query: 8   RLV-SSHLLSCVMRKRISLTCLLDLEYGDS--------------AFRLLSQRDQILVRAI 52
           R   +  LL  + +       L       +                  L  R+  LV  I
Sbjct: 91  RAASAVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLGFRTNPLDARNTRLVTDI 149

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110
           V   +R+   +D ++  +     ++   +  LQQ+LR+ V +I+ L +  YAVV+  V  
Sbjct: 150 VAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEIVKLGMPPYAVVNENVTL 209

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELL--------------QRIAGISIIPEWFKERL 156
             R         +VN ILRRV+ ++ + +              + ++     P W   R 
Sbjct: 210 -ARAALRAGAGNMVNGILRRVASDREKDMLPLPKVEGDDRSKARALSVKYSHPVWMIRRW 268

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDI-----------ETWAHKLNAVMLPTGGIRL 205
             + G+E  + + +   SP    L                 +    +       T  +RL
Sbjct: 269 MTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSRDDLVLLLKKLNVQHELSPHMTEFVRL 328

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262
               +S++      EG+  VQD  A + V +       +++D CAAPGGK   +      
Sbjct: 329 STGLQSVIQAGLLKEGMCAVQDEGAGLVVSVVDPQPGETIIDCCAAPGGKALFMASRLQG 388

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSST 319
              V A+DV++ RL  L        L        D             D VL+DAPCS  
Sbjct: 389 QGSVIAIDVNQGRLRVLEEAAKVQALEGVVNACQDDIRSFAVGASIRADKVLLDAPCSGL 448

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G + + PD+ W R   D+ +    Q +LL      VKPGGI+V+S CS+D  +++E V+ 
Sbjct: 449 GVLCKKPDMRWKRTLKDLEQLILLQDELLDAASLLVKPGGILVYSTCSVDPGENKERVES 508

Query: 380 VLRSSP 385
            L   P
Sbjct: 509 FLTRHP 514


>gi|302879579|ref|YP_003848143.1| Fmu (Sun) domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302582368|gb|ADL56379.1| Fmu (Sun) domain protein [Gallionella capsiferriformans ES-2]
          Length = 417

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 95/448 (21%), Positives = 166/448 (37%), Gaps = 56/448 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +    L  ++         L   + +     +   ++ +V       LR    ++A  D 
Sbjct: 10  LVILALRTILPLEHPADTTLRYFFKNER---IGSNERAIVAETAFGVLRHRLLLEAACDG 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
              ++  R    L  L++     +   ++      D A   A                  
Sbjct: 67  --KATPRRMA--LAYLVKFGGYNLR--EIQPVLKRDEAEWLATAKSL------------- 107

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                     Q ++  + +PEW  E++   Y  E +L I  A      +D+ V   +   
Sbjct: 108 ------QYEGQPLSIQAELPEWLIEKMRASYSDEDILTIGQAMQLGAPLDIRVNTLLAKR 161

Query: 190 AH--------KLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                     K++A   P   I ++   +  +     F  G   VQD  + +   L    
Sbjct: 162 EEVLLQLEAQKIDATATPYSPIGIRLREKIPLNKDELFTTGKVEVQDEGSQLLGFLLAPK 221

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
            N  V+D CA  GGKT  L   + S  ++ A+DVS++RL  L+  L R            
Sbjct: 222 RNDMVVDFCAGAGGKTLMLSALMNSQGRLYAMDVSEKRLANLKPRLKRSGASNIQPMLIA 281

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ + +    I +    Q  +L     
Sbjct: 282 HENDLKVKRLSGKIDRVLVDAPCSGLGTLRRNPDLKFRQSPQSIAELNQKQTAILASASR 341

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K GG +V++ CS+  ++++ +V+  L + P    L        + I + M      ++
Sbjct: 342 LLKKGGRLVYATCSILPEENQHIVEAFLAAHPDYKLLPAGEVLQQQKIPLEMGD----YL 397

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
            + P++           DGFFA  L R+
Sbjct: 398 ELRPNL--------HATDGFFAAVLERI 417


>gi|163844534|ref|YP_001622189.1| hypothetical protein BSUIS_B0363 [Brucella suis ATCC 23445]
 gi|163675257|gb|ABY39367.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 429

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDAHDARALAFGG--LLADDGMDIEMVD------VALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|167737507|ref|ZP_02410281.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei
           14]
          Length = 420

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 165/446 (36%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +     + +   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG+  VQD  + +   L        
Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG + ++ CS+ + ++E +V   L + P   ELVP +    +     +AL    ++ + P
Sbjct: 347 GGRLAYATCSVLEAENEAIVSAFLAAHP-AFELVPASRVLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|326402861|ref|YP_004282942.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301]
 gi|325049722|dbj|BAJ80060.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301]
          Length = 426

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 98/447 (21%), Positives = 165/447 (36%), Gaps = 45/447 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  LL  +   R     + +       F  +   D+  +  IV   LR   R+   L+
Sbjct: 8   QAAIELLGTIEADRRPADAIANDFLRTRRF--IGGGDRREIGEIVWSVLRARRRLGWWLE 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            V   + PR    L   LRV    +  +     A +   +  A         A    ++ 
Sbjct: 66  RVGAEATPRL---LIASLRV----LTGMPAPRVAGLFGVMRFAP----PPLEAAERRALD 114

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R  +          A    +P++    L   +G +++ +   A + P  +DL V     T
Sbjct: 115 RLDTHTLDHPSMPEAVRLEMPDFVLPLLRERFG-DKLESECAALMQPAPLDLRVNLLKAT 173

Query: 189 WAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               L A+                      +++     F +G+  +QD  + +   L G 
Sbjct: 174 RDEALAALAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGA 233

Query: 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
              + V D CA  GGKT   A  + +   + A DVS  RL+     L R  ++  +    
Sbjct: 234 QPGMRVADYCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLL 293

Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D +    +K FD VLVDAPC+  GT RR+PD        D+ +    Q  +L     
Sbjct: 294 ESGDKWVKRQEKKFDRVLVDAPCTGAGTWRRNPDARLKLTETDLAELTAKQAAILDAAQR 353

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +V++ CS+ + ++E  ++  L        +VP+       +           +
Sbjct: 354 LVKPGGRLVYATCSVLRPENEAQIESFLARH-SDFAIVPVADGLPAYLHGD-------ML 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           R++P           G DGFFA  + R
Sbjct: 406 RLSP--------ARDGTDGFFACRMER 424


>gi|254695468|ref|ZP_05157296.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv.
           3 str. Tulya]
 gi|261215854|ref|ZP_05930135.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
 gi|260917461|gb|EEX84322.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
          Length = 429

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERGVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D    RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAEHARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|171057430|ref|YP_001789779.1| Fmu (Sun) domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170774875|gb|ACB33014.1| Fmu (Sun) domain protein [Leptothrix cholodnii SP-6]
          Length = 418

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 156/444 (35%), Gaps = 54/444 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  V+R       ++   +     R L  R++  +   V   +R   R   +      
Sbjct: 12  ELLHEVLRFTQPADAVVSAFFR--RQRALGVRERHTLAETVYAVVRERLRYQYLAKS--- 66

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
                     ++L+ ++           +   D  +       E +  A +    L +  
Sbjct: 67  ----GTGSLERRLILLA-----------WQGSDSYMHAVATPDELKWVATVKLLSLAKQP 111

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETW 189
                          +PEW  E L      ++   ++++ + P  +DL         +  
Sbjct: 112 DNL---------RHNLPEWLAEAL-KQELGDQFWPLAESLMKPAGLDLRANLLKSRRDEV 161

Query: 190 AHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              L    + T                 +     F  G   VQD  + +   L       
Sbjct: 162 RATLAEEGIATEPTPFSPWGLRTTGKPTLNRTETFTRGEVEVQDEGSQLLALLTEARRGE 221

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296
            V+D CA  GGKT     ++ +  ++ A DVS  RL  L+  L R  L          E 
Sbjct: 222 MVVDFCAGAGGKTLALGAMMRNTGRLYAFDVSAHRLAALKPRLARSGLSNVYPAGIAHER 281

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D          D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L      +K
Sbjct: 282 DDRIKRLGGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQSVAELVAKQTAILASASRLLK 341

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V++ CSL K ++EE+      + P    L        +++  A  L+  G++R+ 
Sbjct: 342 PGGRLVYATCSLLKAENEEIAAAFSAAHPDFEPLDAAEVLARQNVPDAATLTSNGYLRLW 401

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P             DGFFA   +R
Sbjct: 402 PH--------QHATDGFFAAVWQR 417


>gi|289450433|ref|YP_003475239.1| putative ribosomal RNA small subunit methyltransferase B
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184980|gb|ADC91405.1| putative ribosomal RNA small subunit methyltransferase B
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 498

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 103/490 (21%), Positives = 179/490 (36%), Gaps = 70/490 (14%)

Query: 6   NARLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           N R  ++ ++     +    S   +L           LS  ++ L  AIV  T+ +L  I
Sbjct: 13  NGREAAAQVIYHCLALHDMASFDPVLRQTV-----NFLSLPERNLAVAIVYGTMTYLYTI 67

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           D VL       L +    L+ +LR +V Q+ Y   + + AVV+   +  K+   ++    
Sbjct: 68  DYVLGKHCKIGLEKLDPWLKSVLRTAVWQLRYSRNLPETAVVNECCKLVKKY-RHQGMVD 126

Query: 123 LVNSILRRV-SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
             N+++R   S         +A    +        +  +G E+      A + P  + + 
Sbjct: 127 FANAVMRAEVSHPVCIPPGNLALQYSLLPELAGYFKKRFGIEQAKIELQALLMPPDLTVR 186

Query: 182 VKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
           V          +N          A       ++L     S+  LP F  G ++VQ   A 
Sbjct: 187 VNRCRSNVISLINELKLYSVAAEAHPYFDHVLKLNLKGASLTELPAFKVGKFFVQGIGAM 246

Query: 232 IPVQL----FGTLNNLSVLDLCAAPGGKTAQ------------------------LIVSG 263
           +   +        +N  V+DLCAAPGGK                                
Sbjct: 247 LVGMIAPIPTHPDDNHLVIDLCAAPGGKITHVLERLLLSNKSPSSGNLPTSTYTNEQSIA 306

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA------VLVDAPCS 317
           + V A D+++ RL+ L  NL RL L       +DA D   + +         V+ D PCS
Sbjct: 307 SFVEAWDINQARLDALIDNLSRLGLPEIKTAVVDATDRKAEPIIRCSGKAALVIADVPCS 366

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G + R P++ W  + + I +    Q ++L          G +++S C+L+  ++E  V
Sbjct: 367 GLGVLARKPELRWNMNYEKICRLLPLQAEILRTASLLTAAQGYLLYSTCTLNWDENEGQV 426

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-------EGWIRITPDMLEKIDGVSSGM 430
              L S+    E  P++   +  +     L          G + + P           G 
Sbjct: 427 NTFLESAEGQ-EFTPVDLTPYLPVSFVDRLDEVERKNLSAGKLNLLP--------ARDGC 477

Query: 431 DGFFAVALRR 440
           +GFF   L+R
Sbjct: 478 EGFFISLLQR 487


>gi|78067310|ref|YP_370079.1| methylase [Burkholderia sp. 383]
 gi|77968055|gb|ABB09435.1| methylase [Burkholderia sp. 383]
          Length = 421

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 97/445 (21%), Positives = 160/445 (35%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGT 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                  A R+      +   ++ L     
Sbjct: 72  PARRLT-------LLGLMQ-----------------TAGRNALKPFLSDTESAWLE-HVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
           +       +   + +P+W  + L   +  + +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALSARFDADELAQLAAALNYPAPLDLRANVQKASRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +V  P       F EG   VQD  + +   L        
Sbjct: 167 DGLRAEGIDAGATPFSPFGVRVVGKPALTRLRLFEEGAIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTAIDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P    LVP         D  + L    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-EFVLVPAQKVL---DDQRIELETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                        DGFFA  L R  
Sbjct: 403 H--------RHATDGFFAAVLERRA 419


>gi|186475344|ref|YP_001856814.1| Fmu (Sun) domain-containing protein [Burkholderia phymatum STM815]
 gi|184191803|gb|ACC69768.1| Fmu (Sun) domain protein [Burkholderia phymatum STM815]
          Length = 419

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 99/443 (22%), Positives = 157/443 (35%), Gaps = 55/443 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLADVLKFTGPADAATSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAESGAGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q      A    V      A+             S+  R+  
Sbjct: 72  PNRRLA-------LLGLMQ-TAGRTALKPFVSE----AENVWLEHVAKIDPQSLPLRI-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW---- 189
                         +P+W  + L N +  E +  ++ A   P  +DL       +     
Sbjct: 118 -----------RMNLPDWIYQALSNRFEAEELAHLAAALNYPAPLDLRANPIKASRDDVL 166

Query: 190 -----AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                A    A                +  L  F  G   VQD  + +   L        
Sbjct: 167 GVLSKAAIEAAATPYAPLGIRVVGKPPLTKLDAFQSGWLEVQDEGSQLLCSLVAPKRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           ++D CA  GGKT     ++ S  ++ A D+S+RRL KL+  L R  L   + +    E D
Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + I +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESIAELTPKQLSILTSAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E VVQ+ L +     ELVP      +     + L    ++ + P
Sbjct: 347 GGRLVYATCSILDAENEGVVQQFLAAH-SDFELVPARDVLAE---QRIDLEMGDFLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                        DGFFA  L R
Sbjct: 403 H--------RHSTDGFFAAVLER 417


>gi|302848840|ref|XP_002955951.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
           nagariensis]
 gi|300258677|gb|EFJ42911.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
           nagariensis]
          Length = 426

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 106/439 (24%), Positives = 179/439 (40%), Gaps = 55/439 (12%)

Query: 44  RDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAV 103
           RDQ LV+ +V    R   R+D V+  +   +    +  ++Q+LR+ V ++    +A Y  
Sbjct: 1   RDQRLVKELVAGVTRLRRRLDFVVANLTQQTPADMESGVRQVLRLGVYELTERRLAPY-A 59

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRV---------SREKIELLQRIAGISIIPEWFKE 154
           ++  V+ AK           VN +LR              ++  L+ +A     P W   
Sbjct: 60  LNEHVQLAKVVSGP-GAGSFVNGVLRSAARQVEAGTLPTPEVRPLRLLALQHSHPNWLVS 118

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDI-----ETWAHKLNAVM--------LPTG 201
           R  + +G++   A+      P    + V         E    +L AV         +PT 
Sbjct: 119 RWLSRFGRQGTEALLRRNNMPPIYTVRVNTLRAGASVERLLGQLAAVGVEAEASPLMPTE 178

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258
            IR++   + +++    ++G   VQD SA + V L        +LD CAAPGGKT     
Sbjct: 179 FIRIRSGLQKLLAEGFVSDGSLVVQDESAGLVVSLLDPQPGERLLDCCAAPGGKTLFAAA 238

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE----------DIIEMDAFDYCPKKLFD 308
            +     +TALDVS  RL  LR   +   +              + + D         +D
Sbjct: 239 RMRGHGSITALDVSAPRLGALRRAAELAGVEDMVTTRAVDLRRRVRQPDTATMW---QYD 295

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VL+DAPC+ TG + +  D+ W R  + + +    Q++LL      V PGG++V+S C +
Sbjct: 296 KVLLDAPCTGTGVLAKRADLRWRRTPEQLYELVALQQELLEAAACLVAPGGVLVYSTCDI 355

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPL-------NSAYWKSIDMAMALSPEGWIRITPDMLE 421
           ++++ +E V+  L   P                  +  S      ++ EG++   P +  
Sbjct: 356 EEEEDQERVRTFLERHPEFEVEPAAAAAVPSGRRGFGASWVPPSVVTAEGFMATLPHV-- 413

Query: 422 KIDGVSSGMDGFFAVALRR 440
                    DG FA  LRR
Sbjct: 414 ------HDTDGAFAARLRR 426


>gi|296314457|ref|ZP_06864398.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           polysaccharea ATCC 43768]
 gi|296838747|gb|EFH22685.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           polysaccharea ATCC 43768]
          Length = 418

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +   P  +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESGDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDTRIARLSGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILYAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   ELV           + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418


>gi|167561858|ref|ZP_02354774.1| NOL1/NOP2/sun family protein [Burkholderia oklahomensis EO147]
 gi|167569080|ref|ZP_02361954.1| NOL1/NOP2/sun family protein [Burkholderia oklahomensis C6786]
          Length = 420

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 100/446 (22%), Positives = 165/446 (36%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFVGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +  A  + +   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTAGRSALKPFVTDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L      + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERVSADELAQFAAAVNYPAPLDLRANALKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 DGLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRESVAELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V + L + P    LVP N    +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSEFLAAHP-EFALVPANRLLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|225076733|ref|ZP_03719932.1| hypothetical protein NEIFLAOT_01784 [Neisseria flavescens
           NRL30031/H210]
 gi|224951931|gb|EEG33140.1| hypothetical protein NEIFLAOT_01784 [Neisseria flavescens
           NRL30031/H210]
          Length = 419

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLTAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------PDEEETKFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +   P  +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESTDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   ELV           + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418


>gi|298370615|ref|ZP_06981930.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281225|gb|EFI22715.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 425

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 191/457 (41%), Gaps = 59/457 (12%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           A+ +++  ++ V  K  +L  +L      +A   L+ ++   ++ I     R+L  +  +
Sbjct: 4   AQQLAAESIAAV-AKGRNLQDVLAAI--RAAHPELTAQENGALQDIAYGCQRYLGSLKHM 60

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L   +      L+ LL  ++ Q+ Y   A +AVV+ AVE   +    + F    N+
Sbjct: 61  LAQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 117

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR  RE+ +      +       +P W+   L+N Y K     I+ A  S   + L V
Sbjct: 118 ILRRFLRERQKLEALCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITTALQSHPPMALRV 176

Query: 183 KFD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                     +E  A +  A           E    +  LPGF++G+  VQD  A     
Sbjct: 177 NRRHGNAEVYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGLVSVQDFGAQQAAY 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--- 291
           L    +   +LD CAAPGGKT  ++  +   VTALD+   RL+++  NLDRL        
Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDAGRLKRVGDNLDRLGFGETRKT 296

Query: 292 --------DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
                        D   +   K FDAVL D PC+++G +RR+PD+ W+R   D VK+A  
Sbjct: 297 RFQTASLYCADARDLAAWYDGKQFDAVLADVPCTASGVVRRNPDIKWSRRPTDAVKTARQ 356

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  LL      +   G ++ + CS+  +++ + +QK L                      
Sbjct: 357 QEALLDALWQTLTKNGRMLLATCSVFVEENTQQLQKFLNRHADA---------------- 400

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                P G   + P+  +         DGF+   + +
Sbjct: 401 ----KPAGEHVLLPNKYQ---------DGFYYALIEK 424


>gi|229815471|ref|ZP_04445803.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM
           13280]
 gi|229809004|gb|EEP44774.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM
           13280]
          Length = 478

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/469 (20%), Positives = 162/469 (34%), Gaps = 43/469 (9%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           RLV+  +L            L            L  RD    R +          +D  L
Sbjct: 18  RLVALRILIAARESGRYARELAADACAS---ASLDSRDAAFARRLALGVTGCSGCLDDAL 74

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           + VL          ++  LR+   ++LYL  +    V  AVE A+        A L N++
Sbjct: 75  NSVLDDP-RSLTADVRDALRIGAYELLYLGTSPQVAVSQAVELARMC--AHGAAGLANAV 131

Query: 128 LRR------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           LRR               E+  ++   A  + +P W   R+ +  G+ER  A+    + P
Sbjct: 132 LRRVAEGTVSFLAAEDVSEQHRVMVSCARRAGLPTWLVRRIVDSLGEERAQAMFACQLEP 191

Query: 176 LYIDLTVKFDI-ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
             I + V     E     L A    +  +      + +  L       +   DA AS   
Sbjct: 192 APIAVQVNPLRSEAVEDALAADGARSLELPGAYAVDRVSEL--VRSNAFAHADAVASDYH 249

Query: 235 QLFGTLNNLS---VLDLCAAPGGKTAQLIVS------GAKVTALDVSKRRLEKLRCNLDR 285
                         L++ A  G KT  ++          +  ALD+ + + +     ++ 
Sbjct: 250 AQLIAAAVTREGSCLEIGAGRGTKTFMVLAHAERRNLDHEHVALDLYEGKCQANAQRIEC 309

Query: 286 LHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
             L        DA D                 FD V VDAPCS TGT+RRH ++ W    
Sbjct: 310 SGLGEIFTAAGDATDLDACLAAYDEQLGRTALFDTVFVDAPCSGTGTMRRHGEIPWRLTP 369

Query: 335 DDIVK-SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPVELVP 392
            +  +     Q +LL +    V  GG ++++ CS+ + ++  VV + L S        +P
Sbjct: 370 QECDRDLPELQLELLREAACRVGAGGQLIYATCSVLRAENSHVVTQFLGSPEGEGFAPMP 429

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           L+ A   +       + +      P    +      G DG F     R+
Sbjct: 430 LSDALAAAGPAYSGAAEDIAAHEIPIGTFQSYPHQGGFDGHFCARFVRV 478


>gi|317407327|gb|EFV87297.1| hypothetical protein HMPREF0005_05441 [Achromobacter xylosoxidans
           C54]
          Length = 459

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 160/449 (35%), Gaps = 59/449 (13%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L  +++        L           L  RD+  V   V   LR L R          
Sbjct: 3   RVLGEILQWTYPADAALSHWLRGHP--GLGARDRSEVAEAVYDVLRHLRRY----RQFGE 56

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S +      L  +L ++              +   ++ A+ +   R     + ++ R   
Sbjct: 57  SGVGPASRRL-AILGLAA-------TLGKETLQEGLDPAEAEWLQRVLQIDLATLPR--- 105

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                     A    IP+W  ERL      E    + +A      +DL V     + +  
Sbjct: 106 ----------AVRGSIPDWLDERLGAMDSPET---LIEALNRQASLDLRVNPLKVERDAM 152

Query: 190 AHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
             +L                     E   +I   P F  G   VQD  + +   L     
Sbjct: 153 LAELQQSAGRYEPVAMPYSPWGIRMEGRPAINRWPQFENGSIEVQDEGSQLLALLVAPRR 212

Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294
              ++D CA  GGKT     L+ S  ++ A DVS  RL + +    R  L     +    
Sbjct: 213 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDS 272

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E DA           VLVDAPCS  GT+RR+PD+ W +  + + +    Q ++L      
Sbjct: 273 ENDARVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPEALAELGQLQERILNSAARC 332

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V PGG +V++ CSL  +++E   ++ L S P    L        +  ++ +      +++
Sbjct: 333 VAPGGRLVYATCSLLAEENEVQAERFLASHPDFERLDAAEILAGRCDNLKL---EGPYVQ 389

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           + PD+         G DGFFA    R  +
Sbjct: 390 LRPDV--------HGTDGFFAAVFERRKK 410


>gi|114706569|ref|ZP_01439470.1| SUN-family protein [Fulvimarina pelagi HTCC2506]
 gi|114537961|gb|EAU41084.1| SUN-family protein [Fulvimarina pelagi HTCC2506]
          Length = 433

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 46/453 (10%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            +  +L+ +  +   +   L        F     +D+  +  +V   LR        +  
Sbjct: 9   AAIDILTDIEARHRPVAQSLKDWGISHRFAG--SKDRSAIGNLVYDALRRKRSYAYRMGE 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                +            + +                A E     + +R    L +  + 
Sbjct: 67  DTPRGIVTAAALDG----LGL---------------DASELLAALEGDRFAPNLPDEDVM 107

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                +       A  + +P+W   +L+  +G   V     A      +DL V       
Sbjct: 108 DRFLGRDASGAPDAVAADVPDWLAPKLQALFGDAWVREA-AALSDRPPLDLRVNTLKAER 166

Query: 190 AH-------------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           A              +L+   +    I       ++    GF +G + VQD  + +   L
Sbjct: 167 AKVIEALKPFAAKASELSRTGIRIAPIAGDGRHPNVQVEAGFQKGWFEVQDEGSQLAAAL 226

Query: 237 FGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
            G      VLDLCA  GGKT   A  + +  ++ + D  ++RL  +   L R  +    +
Sbjct: 227 CGAQPGNQVLDLCAGAGGKTLALAAAMENTGQIHSYDGDRQRLAPIYERLKRAGVRNVQV 286

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            +  A     +   D VLVDAPC+ TGT RR PD  W      + K    Q  +L Q   
Sbjct: 287 HDPRADLSDLEGAMDIVLVDAPCTGTGTWRRRPDAKWRLSEAALEKRVAEQDAVLDQAAR 346

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           FVKPGG +V+  CS+   ++ + +   L  +   V    ++      + +      +G  
Sbjct: 347 FVKPGGRLVYVTCSVLPNENGDRISAFLERTNGFV----VDELGEVWVGLVPGSHKDGIH 402

Query: 414 RIT--PDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           R++        +   ++G DGFF  A+R+  QP
Sbjct: 403 RVSVGEGTALTMTPATTGTDGFFVCAIRK--QP 433


>gi|167585709|ref|ZP_02378097.1| Fmu (Sun) domain protein [Burkholderia ubonensis Bu]
          Length = 424

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 159/446 (35%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     +       
Sbjct: 72  PARRLT-------LLGLMQ------------------TAGRNALKPFVSDAEAAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +   + +P+W ++ L + +  E +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRVRANLPDWIQQALSSRFDAEELAQLAAAMNYPAPLDLRANAQKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +   P       F EG+  VQD  + +   L        
Sbjct: 167 DALRANGIDAGATPFAPFGVRVAGKPALTKLKVFEEGMIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRASIDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V + L   P    LVP         D  +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENEAIVAQFLADHP-EFVLVPAQKVL---ADQRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRGQ 420


>gi|167835736|ref|ZP_02462619.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis MSMB43]
          Length = 420

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 99/446 (22%), Positives = 165/446 (36%), Gaps = 55/446 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +  + +
Sbjct: 14  LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGVGA 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + +     +     + +   V  A+    +        S+  RV  
Sbjct: 72  PARRLA-------LLGL-----MQTVGRSALRPFVSDAEWAWLDHVAKIDPASLPLRV-- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L    G + +   + A   P  +DL         +   
Sbjct: 118 -----------RTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKATRDQVV 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 DGLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS +RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSGKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETLDELAPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+ + ++E +V + L + P    LVP +    +     +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLEAENEAIVSEFLAAHP-EFALVPASRVLAE---QRIALDTGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        DGFFA  L R  Q
Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420


>gi|284045174|ref|YP_003395514.1| sun protein [Conexibacter woesei DSM 14684]
 gi|283949395|gb|ADB52139.1| sun protein [Conexibacter woesei DSM 14684]
          Length = 444

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 164/464 (35%), Gaps = 61/464 (13%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V++ +L  V          L    G++    L  RD     A+    ++    +D 
Sbjct: 10  PARQVAAAVLRRVESDGAYADRALA---GEARRAGLDARDHAFAMALAFGAVQRRRTLDH 66

Query: 66  VLDFVLISSLPRKKYSLQ-QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH----- 119
           V++ +    + +    ++  L    +  +    VA +A VD +VE AK      +     
Sbjct: 67  VIERLARRPVGQLDPPVRDALRLGLLQLLFLGGVAPHAAVDQSVELAKAAGGPGYKLVNA 126

Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
              +      R +++         A +  +P+W      +  G E   A+      P   
Sbjct: 127 VLRRGAREGPRILAQLDDRSPHGAALLHSVPDWIAALWWDALGAEEARALLARVNEPAET 186

Query: 179 DLTVKFDIETWAHKLNA-------------VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
            L V       A                    +P     + +    + S P FA G    
Sbjct: 187 ALRVNTLAADPAAVAAELGERGVAVRPAALEGIPLDEGLVVDSAFDVRSDPLFASGALVA 246

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA---------LDVSKRRL 276
           Q  +A    +L        VLDLCAAPGGK   L        A          +     L
Sbjct: 247 QSRAAMAAARLLAPAPGARVLDLCAAPGGKATHLAALVGAAGAAGEVVAVERHEGRAEAL 306

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            +    L    +   +  +  A    P   FDAVLVD PCS  GT++  PD+ W    + 
Sbjct: 307 RETCERLRAGGIVRVETGDA-AQPRDPGDHFDAVLVDPPCSGLGTLQGRPDLRWRASAEA 365

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           I + +  Q ++L  G + ++PGG ++++ C++  +++E+VV   L +             
Sbjct: 366 IGELSRLQGRILAAGAAALRPGGALLYATCTISPRENEQVVDAFLAAH------------ 413

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                        +G+ R+      ++       DGFF   LRR
Sbjct: 414 -------------DGFERV---STRQLTPSRDDTDGFFLALLRR 441


>gi|317124745|ref|YP_004098857.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043]
 gi|315588833|gb|ADU48130.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043]
          Length = 501

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 169/479 (35%), Gaps = 58/479 (12%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARL +  ++  +  +       L     +        RD      +V    R     DA
Sbjct: 36  PARLTAYTVMREI-NQGAYANLALPKLLREKRLHG---RDAAFATELVYGATRLSGLYDA 91

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +        + +   ++   +R+   Q+L + V  +A VD  V  A++   +   A  VN
Sbjct: 92  ITTRAAGRPVEQIDPAVLDSIRLGAHQVLGMRVPSHAAVDETVALARQVNGS-GAAGFVN 150

Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE---------- 163
           +++RR+S   ++    +            A  +  P W  + L                 
Sbjct: 151 AVMRRISERGLDEWLDVVTEGVTDPTEALAIRTSHPLWIVKALRAALIGHGRVAANGVEP 210

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
            +  + +A  +   + L  +  + T A      AV   T  +          ++    EG
Sbjct: 211 ELARLLEADNAAAKVSLAARPGLATVAELAASGAVASSTSPVGAVLPDGDPGAIAAVREG 270

Query: 222 VWWVQDASAS-------IPVQLFGTLNNLSVLDLCAAPGGKT----AQLIVSGAKVTALD 270
              VQD  +              G +     LDLCA PGGK     +  +       A +
Sbjct: 271 RAAVQDEGSQLLALAIATAEVGAGAITGERWLDLCAGPGGKAGLLASIAVQRRIPFVANE 330

Query: 271 VSKRRLEKLRCNLDRLHL------YAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
           V+  R   +   L              ++   D  D        +  VL+DAPC+  G +
Sbjct: 331 VNAHRARLVEQTLSAAVAAAVEAGTTVEVRHGDGRDLGGLTPGAYSRVLIDAPCTGLGAL 390

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           RR P+  W R   D+   A  QR+LL  GI   + GG++ ++ CS    ++  VVQ VLR
Sbjct: 391 RRRPEARWRRRPQDVAALATLQRELLASGIEATRAGGVIGYATCSPHLNETRFVVQDVLR 450

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                VEL      +  +    +    +G ++++ P +         G D  F   LR+
Sbjct: 451 KR-DDVELEDARPLFLDAAGAPLPELGDGPYVQLWPQV--------HGTDAMFLAVLRK 500


>gi|283852902|ref|ZP_06370163.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B]
 gi|283571731|gb|EFC19730.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B]
          Length = 451

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 147/418 (35%), Gaps = 41/418 (9%)

Query: 6   NARLVSSHLLSCVMRKR-----------ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54
            AR ++  +L  V   +             +   LD     +    L  RD+ L   +V 
Sbjct: 11  PARKLALAVLGRVFPAKGAARGPGPGGGQDVQAALDTALAGTK--GLDPRDRGLATELVY 68

Query: 55  VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
             LR   RID +L   L          ++++L ++V +ILY   V  YA VD AV   +R
Sbjct: 69  GYLRLCGRIDWMLSRFLKKP-EAVPLPVRRVLGLAVYEILYCSRVPAYASVDWAVSAVRR 127

Query: 114 DKENRHFAKLVNSILRR-------------VSREKIELLQRIAGISIIPEWFKERLENFY 160
               +    + N++LRR                ++ +    ++     PEW        +
Sbjct: 128 LSG-KGLGGMANAVLRRVAADPKALDDPEFYCPDRCDEATYLSRYYSCPEWIVGLWLRDF 186

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI---VSLPG 217
           G         A +    + L V           +A+    G         ++     L  
Sbjct: 187 GPTDTRLYLAAQVEAAPLGLRVNRSRPDARALFDALAALPGVRLADFPTLAVPAGTDLAA 246

Query: 218 F---------AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA 268
                        +      +  I  +L        V D CA  GGK   L  +G +V A
Sbjct: 247 AGVDMGAALAEGRLSRQSAGAQQILSRLGLADWPEPVFDACAGRGGKALFLAEAGKRVFA 306

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
            D+   +L  LR    RL L         A           +L+DAPCS  G + R PD 
Sbjct: 307 GDMHATKLAGLRKETLRLGLPPVAAFRASATRMPLLSPPGTILLDAPCSGLGVLSRRPDA 366

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            W R+ +D+      Q  +L    + + PGG +V+  C+++  ++E+ + ++      
Sbjct: 367 KWRREPEDLAGLVRLQGAMLEAAYAALPPGGRLVYVTCTVNPAENEQAIDRLGNRHRN 424


>gi|302877269|ref|YP_003845833.1| sun protein [Gallionella capsiferriformans ES-2]
 gi|302580058|gb|ADL54069.1| sun protein [Gallionella capsiferriformans ES-2]
          Length = 421

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 206/452 (45%), Gaps = 46/452 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N +L ++ ++  VM    +L  +LD      +    +   +  ++ +   TLRF  +++
Sbjct: 2   HNIQLAATQIVQQVMEDGRNLNQVLDESLRRKSVW--TPAQRAALQDLSYGTLRFYGQLN 59

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A+L+ +L        + +  LL V++ Q+ Y   A +AVVD AV  A  D  N     LV
Sbjct: 60  AILELLLHK--HMTDHRISYLLLVALYQLQYSRAAQHAVVDHAVRSA--DILNPKIRGLV 115

Query: 125 NSILRRVSREKIELLQRIA----GISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           N+ILR   R + +LL + A    G    P+W+ + L   YG +   AI  A      + L
Sbjct: 116 NAILRNFLRNQADLLTQAALKDEGHYSHPQWWIDELRAQYG-DAADAILIAGNGHPPMTL 174

Query: 181 TVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
            V              A +     L        E P S+  LPGF +G+  VQDA A   
Sbjct: 175 RVNAQRGSTPDYLAQLAAQDIPARLIGAEALQLEKPVSVDKLPGFFDGLVSVQDAGAQYA 234

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
            +L      + VLD CAAPGGKTA +   +  ++ ALD    RL +++ NL RL L A  
Sbjct: 235 ARLLDAKAGMRVLDACAAPGGKTAHILERADVELLALDKDAARLSRVKENLQRLTLNAAL 294

Query: 293 I--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +        D+   +LF+ +L D PCS+TG +RRHPD+ W R   D+   A  Q ++L  
Sbjct: 295 LTGDAASPSDWWDGRLFERILADVPCSATGVVRRHPDIKWLRRKKDLASFAEQQFEILNA 354

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               + PGG+++++ CS+ KQ++++VV K L  +P   +                   P 
Sbjct: 355 LWPLLAPGGLLLYATCSVFKQENQQVVDKFLAQTPAAQQ--------------RDTGLPG 400

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           G +   PD            DGFF   L++ +
Sbjct: 401 GML--LPD---------DEHDGFFYALLQKTV 421


>gi|148260197|ref|YP_001234324.1| Fmu (Sun) domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146401878|gb|ABQ30405.1| Fmu (Sun) domain protein [Acidiphilium cryptum JF-5]
          Length = 426

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 98/447 (21%), Positives = 165/447 (36%), Gaps = 45/447 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  LL  +   R     + +       F  +   D+  +  IV   LR   R+   L+
Sbjct: 8   QAAIELLGTIEADRRPADAIANDFLRTRRF--IGGGDRREIGEIVWSVLRARRRLGWWLE 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            V   + PR    L   LRV    +  +     A +   +  A         A    ++ 
Sbjct: 66  RVGAEATPRL---LIASLRV----LTGMPAPRVAGLFGVMRFAP----PPLDAAERRALD 114

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R  +          A    +P++    L   +G +++ +   A + P  +DL V     T
Sbjct: 115 RLDTHTLDHPSMPEAVRLEMPDFVLPLLRERFG-DKLESECAALMQPAPLDLRVNLLKAT 173

Query: 189 WAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               L A+                      +++     F +G+  +QD  + +   L G 
Sbjct: 174 REEALAALAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGA 233

Query: 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
              + V D CA  GGKT   A  + +   + A DVS  RL+     L R  ++  +    
Sbjct: 234 QPGMRVADYCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLL 293

Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D +    +K FD VLVDAPC+  GT RR+PD        D+ +    Q  +L     
Sbjct: 294 ESGDKWVKRQEKKFDRVLVDAPCTGAGTWRRNPDARLKLTETDLAELTAKQAAILDAAQR 353

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +V++ CS+ + ++E  ++  L        +VP+       +           +
Sbjct: 354 LVKPGGRLVYATCSVLRPENEAQIESFLARH-SDFAIVPVADGLPAYLHGD-------ML 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           R++P           G DGFFA  + R
Sbjct: 406 RLSP--------ARDGTDGFFACRMER 424


>gi|294341027|emb|CAZ89422.1| putative RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE B (SUN)
           [Thiomonas sp. 3As]
          Length = 435

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/459 (20%), Positives = 163/459 (35%), Gaps = 63/459 (13%)

Query: 5   MNARLV---SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           M  R +   +  +L  ++R   +   +L   +       L + D+ ++   V   LR L 
Sbjct: 1   MKPRDLLYTARDVLRDMLRFDAAADAVLSRLFRAKPQ--LGKTDRQILADTVYQVLRHLR 58

Query: 62  RIDAVLDFVLISSLPRKKYSLQQL-----LRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                              + + +     LR+++                          
Sbjct: 59  L------------FQTLAATDESIGGAMELRLAI----------------LGWSGNAQSL 90

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           +   +       R+    +  +    A    +PEW    L+  YG E             
Sbjct: 91  HAALSP-EQLDWRKRLLAQDAMALPEAVRWSLPEWLAAALQANYGAEYPALAQAMLRPAP 149

Query: 177 -YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDA 228
             + + V+         + A +                    ++  L  F EG   VQD 
Sbjct: 150 LDLRVNVQKTRREAVLDVFARLNLPAQPTPYSPWGVRLEGKPALQDLTVFREGWVEVQDE 209

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
            + +   L        V+D CA  GGKT     ++ S  ++ A DV+  RL KL+  L R
Sbjct: 210 GSQLLAVLLAPRRGEMVVDFCAGAGGKTLALGAMMRSTGRLYAFDVADYRLAKLKPRLLR 269

Query: 286 LHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
             L          E D          D VLVDAPCS  GT+RR+PD+ W +  +DI +  
Sbjct: 270 SGLSNVYPVAIAHERDERVRRLAGKVDRVLVDAPCSGLGTLRRNPDMKWRQKPEDIAELR 329

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L    + +KPGG +V++ CS+  +++  +    L + P   E VP ++   +  
Sbjct: 330 TKQASILQSAATLLKPGGRLVYATCSILPEENSGIFNAFLAAHP-DFERVPADTVLRQQG 388

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                L  +G +++ P+            DGF+A  L+R
Sbjct: 389 VDGEGLVTQGDLQLLPN--------RHATDGFYAAVLQR 419


>gi|269214400|ref|ZP_05986484.2| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           lactamica ATCC 23970]
 gi|269209995|gb|EEZ76450.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           lactamica ATCC 23970]
          Length = 419

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 11  AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 64

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 65  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 105

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 106 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 165

Query: 189 WAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                +           F +G   VQD  + +   L G    
Sbjct: 166 VLPLLQAESADAEATPYSPWGIRLKNKIAFNKHELFLDGTLEVQDEGSQLLALLVGAKRG 225

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 226 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSE 285

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + + ++ +      Q  +L      V
Sbjct: 286 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSSETVANLLEQQHSILDAASKLV 345

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K  G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 346 KTQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LAGLKIDLDTGKYLRL 401

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 402 --------DSAKHQTDGFFAAVLQRK 419


>gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5]
 gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
          Length = 450

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/454 (20%), Positives = 180/454 (39%), Gaps = 37/454 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            + +  L+ V  K +S    L+  +     +      + +  A V    ++  +ID +L+
Sbjct: 11  EIIADALTLVEEKELSSKHALERIFKRVEGKDKETA-RGIAHAYVFEIEKWRAKIDFILN 69

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120
            VL  S +      L  LLR+   ++ +  V           VV    +  K    N   
Sbjct: 70  SVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKAKFANAIL 129

Query: 121 AK--LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +    N        ++ + ++ ++     P W+ E + +  G +  + +  + + P   
Sbjct: 130 REVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRY 189

Query: 179 DLTVKF---DIETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            + V     DI+     L       A+      +++ +  + +  L    +G + +QD +
Sbjct: 190 YVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLA 249

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++    +        VLDL AAPG KT      + +  ++ A+D S  RL K++  + RL
Sbjct: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRL 309

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +    ++  D   +  ++ F+ +++DAPCSS+GT R+ P+V W  D + I +    QR 
Sbjct: 310 GVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRN 369

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +LL     ++ GG + +S CS+   ++EE V   L       E+V     +    D    
Sbjct: 370 MLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK---GFEIVDYPFEWG---DKGFL 423

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              E   R      +           FF   LR+
Sbjct: 424 EIGEKVFRAWTHKHDCNS--------FFIAKLRK 449


>gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-28]
 gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-28]
          Length = 354

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 33/365 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEW 151
            + A +  AVE AKR + ++  + +VN +LR + RE         + ++R+A  +  P W
Sbjct: 2   PERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLDEIKDPVERLAIATSHPVW 60

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGI 203
             +   + YG E    + +  + P      V  D  T    +         A        
Sbjct: 61  LVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLASEGIEAKSGDLSND 120

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS- 262
            ++    ++     F +G   +QD S+ +  +        +VLD CAAPGGKT  +    
Sbjct: 121 AIQIERGNVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERL 180

Query: 263 --GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCS 317
               KV +LD+   ++  ++   +RL L   +   +D     ++   + FD +LVDAPCS
Sbjct: 181 KGTGKVMSLDLHAHKVRLIKQQAERLGLENIETKALDARKVQEHFANETFDKILVDAPCS 240

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K ++E+V+
Sbjct: 241 GFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVI 300

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
            K L+  P   E     +   +  +       EG ++I P             DGF+   
Sbjct: 301 DKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQILPHYFA--------TDGFYIAC 349

Query: 438 LRRLI 442
           LR+ +
Sbjct: 350 LRKKV 354


>gi|261377514|ref|ZP_05982087.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           cinerea ATCC 14685]
 gi|269146250|gb|EEZ72668.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           cinerea ATCC 14685]
          Length = 418

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K      +   + +P+W  E+L+  + +E +LA   +   P  +D+ V       + 
Sbjct: 105 KARKTAFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A    T            +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADTEAAPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPKRISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            DA         D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDARIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLAQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   ELV           + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 401 --------NSGEHQTDGFFAAILQRK 418


>gi|323342155|ref|ZP_08082388.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464580|gb|EFY09773.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 404

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 100/442 (22%), Positives = 184/442 (41%), Gaps = 51/442 (11%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R+ S  +LS V  K      +L           L  +DQ  V A V  TL+    +D   
Sbjct: 3   RIESYKVLSEVYFKGRHAHLVLKEL-------DLPAQDQAFVSAFVYATLQNSLFLDYQY 55

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           + ++   LP+    ++ ++++  AQ   +D + DYA+V   V+  K   ++R+ + +VN+
Sbjct: 56  EDLVDKKLPK---EVRLVIKMGCAQYFKMDKIPDYALVSETVDLCKAIGKHRY-SGVVNA 111

Query: 127 ILRRVSREKIELL-----QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           +L++V       +     +  +    +P W  + L   Y +   LA +  C       + 
Sbjct: 112 VLKKVIERNEREISGSDLEVASIQYSMPLWIMKLLSKQYSESFSLAYAQYCQDIKPTYVR 171

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                 T     + ++             ++       EG   VQD ++   V+      
Sbjct: 172 FNALKPTTDDLSDFILDDQDKHL---AKPALFKSKYLQEGYVLVQDINSQEVVRWMDLEP 228

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
           +LSVLD C  PG KT Q+         +T +++ + R E  R  L+R ++   +II  D 
Sbjct: 229 SLSVLDCCCGPGTKTVQIANYLENSGTITGVELHESRAEATRALLERCNVVNANIITSDV 288

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
             +   + +D +LVDAPCS  G +    D+ +     D+ +    Q+++L+    FVK  
Sbjct: 289 LQFQTDQKYDRILVDAPCSGLGVLSHKHDLRYHIFPQDLDELVKIQQEMLIHTSQFVKKD 348

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           GI+V+S C+L+++++E+ VQ  L       EL+                           
Sbjct: 349 GILVYSTCTLNRKENEKQVQTFLDHHSN-FELI--------------------------- 380

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
               ++ V +  DGF+   L+R
Sbjct: 381 KEVTLNPVETKGDGFYIAKLKR 402


>gi|254172425|ref|ZP_04879100.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
           N-terminal NusB regulator domain [Thermococcus sp. AM4]
 gi|214033354|gb|EEB74181.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
           N-terminal NusB regulator domain [Thermococcus sp. AM4]
          Length = 451

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 184/456 (40%), Gaps = 38/456 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            V +  LS V  + +S    L+  +   A +   +  + L  A V    ++  +ID +++
Sbjct: 11  EVVADALSLVEERELSSKHALERVFRKVAGKDREKA-RGLAHAYVFEIEKWRGKIDFIIN 69

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL  S +      L  LLR+   +I +  V      D  V   K  + +   AK VN++
Sbjct: 70  SVLRGSKVEDLDPYLANLLRIGTFEIHFRKVPPAIATDSVVRVVKE-RFDFSRAKFVNAL 128

Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +  + +             + ++ ++     P W+ E +    G +  + +  +   P  
Sbjct: 129 MHSIEKFDVERALKRLKERDRIEWLSVRFSHPRWYVEYVIELLGYDEAVRLLLSNNRPQR 188

Query: 178 IDLTVKF------DIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             +           +  +  +     A+      +++ +    +  L  + EG + +QD 
Sbjct: 189 YYVRANTLKTDVDSLRDYLEENGVRTALTPVPDVLKVLDYRTPVTRLDWYKEGKFVIQDL 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           +++    +        VLDL AAPG KT      + +  ++ A+D S  RL +++  +  
Sbjct: 249 ASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRLMRMKEKMKL 308

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L +    ++  D   +  K  FD +++DAPCSS+GT R+ P+V W  D + I +    QR
Sbjct: 309 LGIKNVKLVHADGQSFRDKAKFDRIILDAPCSSSGTYRQFPEVKWRFDENKIKRIISVQR 368

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      ++ GG + +S CS+   + EE V   +    + +E++P + ++    D   
Sbjct: 369 NMLRNAYENLREGGEMTYSTCSIRVDEDEENVLFAVER--VGLEVIPYDFSWG---DRGF 423

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +   R                + FF   + RL
Sbjct: 424 LEIGDKVFRAWTH--------RHDCNSFFIAKMGRL 451


>gi|78355064|ref|YP_386513.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78217469|gb|ABB36818.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 444

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 154/462 (33%), Gaps = 61/462 (13%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V+ K+     +LD    D+    LS +D  L   +V   LR   RI  
Sbjct: 16  PARGAALEILRDVLDKKREAQSVLDSYLKDNR---LSPQDAALCTELVYGYLRSEIRISW 72

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   L     R    L   + +SV +ILYL  V  YA VD AV   +        ++L 
Sbjct: 73  LIRRFL-KPDSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVRSRFGT-GLSRLA 130

Query: 125 NSILRRVSREKIELLQRIAGI-----------------SIIPEWFKERLENFYGKERVLA 167
           N++LR + R     LQ                         P W  +     YG+ER   
Sbjct: 131 NAVLRSIDRLGDAPLQSGWYRETLQAEGVDTAGYLSVWYAAPRWVVDMWIEAYGEERAEQ 190

Query: 168 ISDACISPL------YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-GFAE 220
                           +                + +  +    L         L     E
Sbjct: 191 YLAGSSRHAPAGVRINLRHPEGPQTHARLTAHPSCIGHSAAGLLFASDSRPAELYVLQEE 250

Query: 221 GVWWVQDASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEK 278
           G+   Q  +    +             D C   GGKT  L+  G     A D S++RL+ 
Sbjct: 251 GIASSQSFAVQEVMDALRPETWEGPVWDCCCGRGGKTCSLLERGVDVCAASDPSEKRLKG 310

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           LR  L+RL L    +    A          AVL D PCS  GT+ R PD+   R    + 
Sbjct: 311 LRTELERLGLPDVPLFAAPASQVPEGIAPRAVLADVPCSGLGTLSRRPDIRQHRTPYSMA 370

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           +    Q ++L      +  GG++ +  C+L+ +++E  + + +  S   + L        
Sbjct: 371 RLVTLQSEILDNVWQVLPAGGLLAYITCTLNPEENELQIARFMERSQAQLMLEWTTPPDS 430

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + +                              F+A  LR+
Sbjct: 431 PACEY-----------------------------FYAALLRK 443


>gi|240103511|ref|YP_002959820.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
 gi|239911065|gb|ACS33956.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
          Length = 451

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 184/453 (40%), Gaps = 38/453 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            V +  LS V  + +S    L+  +   A +   +  + L  A V    ++  +ID +++
Sbjct: 11  EVVADALSLVEERELSSKHALERVFRKVAGKDREKA-RGLAHAYVFEIEKWRAKIDFIIN 69

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL  S +      L  LLR+   +I +  V      D  +   K  + +   AK VN++
Sbjct: 70  SVLKGSKVEDLDPYLANLLRIGTFEIHFRKVPPAIATDSIIRVVKE-RFDFSRAKFVNAL 128

Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +  + +             + ++ ++     P W+ E +    G +  + +  +   P  
Sbjct: 129 MHSIEKFDVERALKRLKERDRIEWLSVRFSHPRWYVEYVIELLGYDEAVRLLLSNNRPQR 188

Query: 178 IDLTV------KFDIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             +           +  +  +     A+      +++ +    +  L  + EG + +QD 
Sbjct: 189 YYVRANTLKTDMDSLRDYLEENGVRTALTPVPDVLKVLDYKTPVTRLDWYKEGKFVIQDL 248

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           +++    +        VLDL AAPG KT      + +  ++ A+D S  RL +++  +  
Sbjct: 249 ASAYVAHVLNPEPGERVLDLAAAPGSKTFHAASLMENKGEIVAVDYSYDRLMRMKEKMKI 308

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L +    ++  D   +  K  FD +++DAPCSS+GT R+ P+V W  D   I +    QR
Sbjct: 309 LGIKNVKLVHADGQSFRDKAKFDRIILDAPCSSSGTYRQFPEVKWRFDERKIKRIISVQR 368

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      ++ GG++ +S CS+   + EE V   +    + +EL+P + ++     + +
Sbjct: 369 NMLRNAYENLRDGGVMTYSTCSIRIDEDEENVLFAVEK--VGLELLPYDFSWGDRGFLEI 426

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                       D + +        + FF   +
Sbjct: 427 G-----------DRVFRAWTHRHDCNSFFIAKM 448


>gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-29]
 gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock1-3]
 gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock1-3]
 gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
           Rock3-29]
          Length = 354

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 33/365 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEW 151
            + A +  AVE AKR + ++  + +VN +LR + RE         + ++R+A  +  P W
Sbjct: 2   PERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLDEIKDPVERLAIATSHPVW 60

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGI 203
             +   + YG E    + +  + P      V  D  T    +         A        
Sbjct: 61  LVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLASEGIEAKSGDLSDD 120

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS- 262
            ++    ++     F +G   +QD S+ +  +        +VLD CAAPGGKT  +    
Sbjct: 121 AIQIERGNVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERL 180

Query: 263 --GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCS 317
               KV +LD+   ++  ++   +RL L   +   +D     ++   + FD +LVDAPCS
Sbjct: 181 KGTGKVMSLDLHAHKVRLIKQQAERLGLENIETKALDARKVQEHFANETFDKILVDAPCS 240

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G IRR PD+   +D  D  + +  Q  +L +    +K GG +V+S C+++K ++E+V+
Sbjct: 241 GFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVI 300

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
            K L+  P   E     +   +  +       EG ++I P             DGF+   
Sbjct: 301 DKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQILPHYFA--------TDGFYIAC 349

Query: 438 LRRLI 442
           LR+ +
Sbjct: 350 LRKKV 354


>gi|288931958|ref|YP_003436018.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
 gi|288894206|gb|ADC65743.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
          Length = 446

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 187/463 (40%), Gaps = 44/463 (9%)

Query: 5   MNARLVSSHLLSCVMRKR---ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
              R     +L+ V+RK            + +        +  D+IL  A+    ++ L 
Sbjct: 2   YKVRERDFVILTEVLRKSEEIKPSQYAKRIVFEKYGILG-TDLDRIL-TAVYYKIMKRLG 59

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSV----AQILYLDVADYAVVDLAVEQAKRDKEN 117
            ID ++  V+          L+  LRV+V     +  Y+   D   V  +V        +
Sbjct: 60  IIDKIIRNVVGVHQNILDPWLRAALRVTVEFFVFEKKYVKHLDKNAVRKSVASFLSKTTH 119

Query: 118 RHFAKLVNSILRRVSREKIELLQRIA---GISIIPEWFKERLENFYGKERVLAISDACIS 174
            +       I  +V+  +++    I       ++P W+ ER       E +  +  A  +
Sbjct: 120 PYVGMFYYEIFDKVTSYELQPRNEIEKLEFKYLLPAWYIER-MKEVVGEELEDLLKALNT 178

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRL---------KELPESIVSLPGFAEGVWWV 225
              I + V          + A+      + +          + P        + +G + +
Sbjct: 179 EPKISVRVNTLKARVEEVVKALEKEGKEVTISEVVPTVLKFDGPYDFDRSKLYRKGKFVI 238

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+ ++++   L        V+DLCAAPGGKT  +   + +   + A D+ + RL+++   
Sbjct: 239 QEEASALASILLDPKPGEVVVDLCAAPGGKTLHMAELMKNRGVIHAFDIDELRLKRMEEL 298

Query: 283 LDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           ++R  +    I + DA        + + D V++DAPC+S GT+ ++P++ W    + I +
Sbjct: 299 IERCGIRIVKIYKKDARKATKILGESVADKVMLDAPCTSDGTLMKNPELRWRIREEKIEE 358

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  Q +LL   +  +KPGG V++  CS+ K+++E VV+++L+     V LVPL+  Y  
Sbjct: 359 LAELQYELLNVAVDLLKPGGRVLYCTCSMFKEENEGVVERILKERK-DVRLVPLSGYYSP 417

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                     EG IR  P              GFF   L +  
Sbjct: 418 GFI-------EGTIRAFPH--------RHNTIGFFYALLEKTT 445


>gi|161523966|ref|YP_001578978.1| Fmu (Sun) domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189351273|ref|YP_001946901.1| Sun protein [Burkholderia multivorans ATCC 17616]
 gi|160341395|gb|ABX14481.1| Fmu (Sun) domain protein [Burkholderia multivorans ATCC 17616]
 gi|189335295|dbj|BAG44365.1| Sun protein [Burkholderia multivorans ATCC 17616]
          Length = 421

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 98/445 (22%), Positives = 157/445 (35%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     +       
Sbjct: 72  PARRLT-------LLGLMQ------------------TMGRNALKPFVSPAEAAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
           +       +   + +P+W ++ L   +  E +  ++ A   P  +DL         E   
Sbjct: 107 KIDPASLPVRIRTNLPDWIQQALSTRFDAEELAQLAAALNYPAPLDLRANVLKATREQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 DALRANGIDAGETPFAPHGVRVVGKPALTRLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSVDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E VV++ L   P    LVP         D  +AL    ++ + P
Sbjct: 347 GGRLVYATCSVLNAENERVVEQFLADHP-DFVLVPAQKVL---ADQRIALETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                        DGFFA  L R  
Sbjct: 403 H--------RHATDGFFAAVLERRA 419


>gi|209885589|ref|YP_002289446.1| Fmu [Oligotropha carboxidovorans OM5]
 gi|209873785|gb|ACI93581.1| Fmu [Oligotropha carboxidovorans OM5]
          Length = 433

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 159/459 (34%), Gaps = 47/459 (10%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L  +  +RI     L        F      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIDVLGAIEAERIPAQNALKSWGTAHRFAG--SGDRAAIAGLVFDALRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++D            S +  L  ++     LDV            A      R 
Sbjct: 57  HASSAYLMD----------DDSARARLLGALKLERGLDVEA---------IASLCNGERF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
               ++   R     +             P W        +G +RV     A  S   +D
Sbjct: 98  APVPLSDAERNALATRTLADAPSDIAGDYPTWLDPHFAEAFGDDRVKEA-AAMASRAPLD 156

Query: 180 LTVKFDIETWAHK------LNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQD 227
           L V                L A   P   + L+ +  +    PG      F +G   VQD
Sbjct: 157 LRVNTLRAKREKAQAALSHLGATPTPWSPLGLRIVLGADARNPGVHAEEIFLKGGVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +            V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAALFTQAKPGEQVVDLCAGAGGKTLALAAMMQGKGRLLATDRDKRQLAPIHQRLS 276

Query: 285 RLHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  +I      +          D V+VDAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNAEIRSPRGAEDVLADASGKADLVVVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L +  S VKPGG + +  CS+  Q++   ++  L   P    + P         
Sbjct: 337 KDQVEVLTRAASLVKPGGRLAYITCSVLPQENSGQIEAFLAREPGFTVMPPAEVIAALGE 396

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             A        +R++P  L  +  + +G DGFF   LR+
Sbjct: 397 RAAAFREA---VRLSPQGLL-MTPLRTGTDGFFVSLLRK 431


>gi|86741875|ref|YP_482275.1| putative RNA-binding Sun protein [Frankia sp. CcI3]
 gi|86568737|gb|ABD12546.1| putative RNA-binding Sun protein [Frankia sp. CcI3]
          Length = 491

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/485 (20%), Positives = 158/485 (32%), Gaps = 66/485 (13%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            RL++  +L  V  +      LL      S    LS RD+  V  +   +LR    +D V
Sbjct: 21  PRLLAWEVLRAVDERGSYANLLLPSLLAGS---GLSARDRGFVTELAYGSLRAQGTLDGV 77

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF------ 120
           LD      +      ++  LR+   Q+L   V  +A V   VE  +     R        
Sbjct: 78  LDTATSRPVHTIDPPVRDALRLGAYQLLRTRVPAHAAVASTVELVRTTSGERPVRFANAV 137

Query: 121 ----------AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE--RVLAI 168
                          + +    R  ++ +  +A ++  P W  E +      +     A 
Sbjct: 138 LRRVAARVAETGGDLATMLSAPRFDVDPVGHLAVVTTHPRWIVEVVAEALAGDLTATRAA 197

Query: 169 SDACISPLYIDLTVKFDI--------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
            +A      + L  +           E     L A + P     ++        LP  A 
Sbjct: 198 LEADDVRPAVHLVARPGRVDRDRLLAEAAQAGLTARVGPYSPYAVRLDGGDPAGLPAVAA 257

Query: 221 GVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTALD----- 270
           G   VQD  + +          +       +DLCA PGGK A L          D     
Sbjct: 258 GAAAVQDEGSQLVTLALARAATVGRDLGLTVDLCAGPGGKAALLAALLGGSAPSDGPGLP 317

Query: 271 -------------VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPC 316
                        V  R                   +  D      +    D VLVD PC
Sbjct: 318 DRPGPPDRPALIAVEPRATRAAMVARSLGDAARAWTVRADGRAVPLRPDGADRVLVDVPC 377

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           +  G +RR P+  W R + D+      QR LL+  +  V+PGG+V ++ CS    ++ EV
Sbjct: 378 TGLGALRRRPEARWRRTSADVAALVPLQRALLVAALDLVRPGGVVAYATCSPHPAETVEV 437

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           V+ V         ++       +   +        ++++ P +         G D  F  
Sbjct: 438 VRGVAGQR-ADTSILDARLTLPEVDRLGDGP----FVQLWPHL--------HGTDAMFVA 484

Query: 437 ALRRL 441
            LRR+
Sbjct: 485 LLRRV 489


>gi|295675129|ref|YP_003603653.1| sun protein [Burkholderia sp. CCGE1002]
 gi|295434972|gb|ADG14142.1| sun protein [Burkholderia sp. CCGE1002]
          Length = 479

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 178/449 (39%), Gaps = 27/449 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V     +L   L   +        +   +  V+ +   T+R L   + ++  +
Sbjct: 38  AAQAVGAVRL-GAALPAALQSVFAAMPEGNAAAA-RGAVQDLAYRTMRRLASAEWLIAKL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  +L  ++A ++  + +     + VVD AV      +E      LVN+
Sbjct: 96  VKKAPP---PHVAHVLACALALLVDDETSAAYTPFTVVDQAVSAIGARREFAFAKGLVNA 152

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LR   RE+      +          P W+ + ++  + +     ++         + + 
Sbjct: 153 VLRNFLRERDTLLAAVQADEVAHWNYPAWWIDAVKRTWPEAWQSVLAAGNTQGPLTLRVN 212

Query: 182 VKFD-----IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            +       ++    +                P  +  +PGF EGV  VQDA A +  QL
Sbjct: 213 ARHSTVDAYLQELQRQQITARKAGEHAVTLATPMPVERIPGFNEGVVSVQDAGAQLAAQL 272

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291
            G  + + VLD CAAPGGKT  L+  +  ++ AL+    R  ++  NL RL L AE    
Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANIQLVALESDASRARRIGENLRRLKLEAEVRIG 332

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           D      +     + FD +L D PCS++G +RRHPD+ W R   DI      QR++L   
Sbjct: 333 DAGNPAQWHDDLDQPFDRILADVPCSASGIVRRHPDIRWLRRQSDIAALVSEQRRILDAL 392

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VKPGG +++  CS+  ++ E   Q         V L         S+  A A S  G
Sbjct: 393 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNQHQDAVRL-DAPGQLLPSVARAPADSSAG 451

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                P             DGFF    ++
Sbjct: 452 SHAGRPAEFSTGTNSDH--DGFFYARFQK 478


>gi|254473408|ref|ZP_05086805.1| putative sun protein [Pseudovibrio sp. JE062]
 gi|211957524|gb|EEA92727.1| putative sun protein [Pseudovibrio sp. JE062]
          Length = 430

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/452 (20%), Positives = 162/452 (35%), Gaps = 50/452 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L+ +  +R  +   L        F      D++ +  +V   LR        + 
Sbjct: 8   AAAIEVLTEINDRRRPVQEALKDWGNKHRFAG--SGDRVAIGNLVFDALRHKLSHAQAMG 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                            L ++           +   +   +  +  +E+RH  + ++   
Sbjct: 66  SESAR-----------ALVLATY--------IWGWGNQVEKLEQVMEEDRHAPEPLSDAE 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
           R    E  ++       + IPEW     +  +G +  LA+  +      ID+ V      
Sbjct: 107 RTALIENKQVGDNDQISANIPEWLWPHFQENFGDD-ALAVGRSLSERAPIDMRVNTVKSS 165

Query: 186 IETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            +    +L+           V +    +        + +   F +G + +QD ++ I   
Sbjct: 166 QDKVLKRLSHLHPEASGLSPVGVRLEPVVGPRKSPHVQAEESFRKGWFELQDEASQIASI 225

Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G      VLDLCA  GGK    A  + +  ++ A D  K RL  L   + R  +    
Sbjct: 226 LSGAQPGEQVLDLCAGGGGKSLALAAQMQNKGQIYAYDAHKTRLAPLYDRMARAGVRNIQ 285

Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
            I+             D V VDAPCS TG  RR PD  W    + +      Q ++L   
Sbjct: 286 TIDPQTGSLDICDGKMDRVFVDAPCSGTGVWRRRPDTKWRVTENALNGRIEDQAQVLETA 345

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSP 409
             FV+ GG ++++ CSL   +++  VQ  L        V+L P+   ++  +     L  
Sbjct: 346 TRFVRSGGKLIYATCSLVPAENQLQVQAFLEKHTDFKLVDLAPVWEEHFGEVSSRRPLFK 405

Query: 410 E-GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + G I +TP           G DGFF   + R
Sbjct: 406 DGGMITLTPHHT--------GTDGFFIAMMER 429


>gi|330994635|ref|ZP_08318558.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           sp. SXCC-1]
 gi|329758276|gb|EGG74797.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           sp. SXCC-1]
          Length = 431

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 166/460 (36%), Gaps = 51/460 (11%)

Query: 1   MKSGMNARL-VSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M     ARL  +  LL+ +    +     L +  + +  +  +   D+  + A V   LR
Sbjct: 1   MTPS--ARLSAAIDLLAAMEATPQRPADALANAFFRERRY--IGGGDRRAISARVWRVLR 56

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              R+   +        PR       +L +   +    +                     
Sbjct: 57  HWRRLHWWIARAGGQVTPRT-----LVLAMMALEPDGHETPHTLFTGERY-------APL 104

Query: 119 HFAKLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLE-----------NFYGKERVL 166
                 +++  R+  + +       A    +P+W   RLE                E  L
Sbjct: 105 GLIGHESALYDRLRGQGMVHADMPRAVRLEVPDWLLPRLERTFGDGLEAELAAMDGEATL 164

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            +    +           D +    +  A+             + + S   F  G+  +Q
Sbjct: 165 DLRVNLLKSDRATACAALDRDGIRAEETALSPWG---LRVAGRQPVTSSTAFRNGLIEIQ 221

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNL 283
           D  + + V   G    + VLD CA   GK    A  + +   + A DVS+ RLE     L
Sbjct: 222 DEGSQLVVAAVGARPGMRVLDYCAGAAGKTLGMAMTMENRGHIVACDVSEPRLEGAVRRL 281

Query: 284 DRLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            R  ++  +       D +       FD VLVDAPC+ TGT RR+PD        D+++ 
Sbjct: 282 RRAGVHNAERHLLVAGDRWARRRSGSFDRVLVDAPCTGTGTWRRNPDARLRLREQDLLEL 341

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q +++ +  + V+PGG +V++ CS+ ++++ + +   L  +P    + P        
Sbjct: 342 TAKQAEIIDRAAALVRPGGRMVYATCSVLREENGDQIAAFLARNPAFSLVAP----DGAH 397

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            D+   LS +G + +TP             DGFFA  ++R
Sbjct: 398 DDLPPGLSTDGQVSLTP--------RQHHTDGFFAAIMQR 429


>gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
 gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
          Length = 418

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/445 (25%), Positives = 191/445 (42%), Gaps = 50/445 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++  L+ V     +L+  L      +    L+ +D+ +++ I     R L  +  +L  
Sbjct: 9   LAAQTLAAV-ASGKNLSDELAHIIAQNP--ELTAQDKGMLQDIAYGCQRHLGSLKFMLGK 65

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +L   +     +LQ  L V++ Q+ +   A +AVV+ AV    +    ++ +   N+ILR
Sbjct: 66  MLNKPID--NEALQSYLLVALYQLNHTQNAPHAVVNEAVNHIAQIGHGQYRS-FANAILR 122

Query: 130 RVSRE----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV--- 182
           R  RE                 +P W ++ L+N Y K     I+ A  +   + L V   
Sbjct: 123 RFLREKDGLNKACRYDDVAKHNLPIWLQKTLQNQYPKHW-HNIATAFQAHPPLTLRVNRR 181

Query: 183 KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             D E +   L+   L                 +  LP FAEG   VQD  A     L  
Sbjct: 182 HADAEQYLAALHDAGLNGKILDDYAIRLAQAVPVAQLPRFAEGWVSVQDWGAQQAAYLLN 241

Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
             +   VLD CAAPGGKT  ++  +   +TALD++ +RL+++R NL RLH  A       
Sbjct: 242 PQHGERVLDACAAPGGKTGHILELADCDLTALDIAPQRLQRVRDNLARLHFQAALHCADA 301

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            +  D+   + FDA+L D PC+++GTI+R+PD+ W R   D  K+A  Q  LL    + +
Sbjct: 302 QNLSDWYNGEPFDAILADIPCTASGTIKRNPDIKWLRRPGDAYKTARQQEPLLDALWTTL 361

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG ++ + CS+ ++++++   + L                                R+
Sbjct: 362 KSGGRMLLATCSVFEEENQQQCHRFLNRHADA--------------------------RL 395

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                E+    S   DGF+   + +
Sbjct: 396 ---HTEQTLIPSEKQDGFYYALIEK 417


>gi|126465287|ref|YP_001040396.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1]
 gi|126014110|gb|ABN69488.1| Fmu (Sun) domain protein [Staphylothermus marinus F1]
          Length = 449

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 176/457 (38%), Gaps = 44/457 (9%)

Query: 9   LVSSHLLSCVMRKRI--SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            +   L+  V                +        S+RD  LV AI    ++ L  +D  
Sbjct: 9   EMVLALVEAVRLSERIKPSQDAKRRAFRKYGILG-SKRD-PLVTAIFYGVMKRLGILDLY 66

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR---DKENRHFAKL 123
           +  ++  +       L+  LRV + +I          +        +    K + +    
Sbjct: 67  IRDIIGVNPYIIDPWLRAALRV-LLEIKVYRDPSRRTLRYLRGSVAKLLSSKTHPYVGMY 125

Query: 124 VNSILRRVSREKIELLQRIAGI-----SIIPEWFKERLENFYGKERVLAISDACISPLYI 178
              I  ++  E  E   +          ++P W+  ++    G      +  A    L +
Sbjct: 126 YTRIYDKIINENYEYKPKNEDEELLVKYMLPPWYVRKIIGLLGNNEAEKLFKALDKQLPL 185

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG---------FAEGVWWVQDAS 229
            + V     +    L  +      ++   +  +I+  PG           +G   +Q+ +
Sbjct: 186 SVRVNTLKTSVEEVLEELRREVKWVKRSSIVPTILKFPGPYNFDKSHLLRKGYIVIQEEA 245

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A++   +      ++V+D+ AAPGGKT  +   + +   + A D+ ++R+ ++R  L R 
Sbjct: 246 AAVASLILDPKPGMTVVDMAAAPGGKTQHMAELMNNEGVIYAFDIDEKRIARMRDILRRT 305

Query: 287 HLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            +    I   D+        +++ D VL+DAPCSS GTI ++PD+ W    + I +    
Sbjct: 306 GVRNARIYREDSRKAPDILGEEIADRVLLDAPCSSDGTIMKNPDLRWRLREEKISELQKL 365

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L  G   +KPGG +++  CS+  +++E +++K L+      EL+PLN  Y      
Sbjct: 366 QYEMLEAGWKLLKPGGKLLYCTCSMLLEENEYIIEKFLKQH-YNAELIPLNKPYDPGFLP 424

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  G +R  P              GFF   L +
Sbjct: 425 -------GTMRAWPH--------RHETIGFFYALLMK 446


>gi|256157947|ref|ZP_05455865.1| Fmu (Sun) domain-containing protein [Brucella ceti M490/95/1]
 gi|256253094|ref|ZP_05458630.1| Fmu (Sun) domain-containing protein [Brucella ceti B1/94]
 gi|261220197|ref|ZP_05934478.1| fmu domain-containing protein [Brucella ceti B1/94]
 gi|265996456|ref|ZP_06109013.1| fmu domain-containing protein [Brucella ceti M490/95/1]
 gi|260918781|gb|EEX85434.1| fmu domain-containing protein [Brucella ceti B1/94]
 gi|262550753|gb|EEZ06914.1| fmu domain-containing protein [Brucella ceti M490/95/1]
          Length = 429

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +    E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENLDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P        +S+G DGF+   L+R
Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427


>gi|304391245|ref|ZP_07373189.1| Fmu [Ahrensia sp. R2A130]
 gi|303296601|gb|EFL90957.1| Fmu [Ahrensia sp. R2A130]
          Length = 429

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 158/453 (34%), Gaps = 43/453 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+ G  A   +  +L+ + ++   ++  L     D  F      D+  +  IV   LR  
Sbjct: 1   MRLGGRA-NAAIEVLNDIDKRSRPVSEALKGWGLDHRFAG--SGDRAAIGNIVYDALRSK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +   +D      L      +  +L              +      +  A     ++  
Sbjct: 58  RSLQWRMDSDSTRKL------VLAVLL-----------DSWGFSPETLNAA--FDGDKFA 98

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--YI 178
             L+          +       A  + +P+W     E  +  E +         P     
Sbjct: 99  PDLLTDDEIAKWTSRKLADAPPAVQADLPDWLVPSFEANFADEWMEEAKAFSQRPPVDMR 158

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP----------GFAEGVWWVQDA 228
             T+K   +  A  L         +    L  +    P           F  G + +QDA
Sbjct: 159 ANTLKASRDKVAKALAKAGAVPDPLTRFGLRVAAGEGPSRQPNVQSEGAFQRGQFEIQDA 218

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
            + I   L        VLDLCA  GGKT   A ++ +  ++ A D +K+RL+ +   L R
Sbjct: 219 GSQIVSDLVFARPGEQVLDLCAGAGGKTLALAAVMENKGQIHAYDSNKQRLKPIYDRLKR 278

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
             ++   +   D          D V++DAPC+ TGT RRHP   W    + +      Q 
Sbjct: 279 AGVHNAQVHGPDDDISDLVGKMDRVVIDAPCTGTGTWRRHPHAKWKLSREMLENRLTEQE 338

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L Q + FVKPGG +++  CS+  +++E  +      +P   EL+     +        
Sbjct: 339 EVLSQAVPFVKPGGFLIYITCSVLPEENENQIVAFTTDNP-QFELLSSGEVWQDLFGFDK 397

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                  +         +   S+G DGF+   +
Sbjct: 398 PQPWSSDM-----KSITLTPASTGTDGFYFAVM 425


>gi|258404156|ref|YP_003196898.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692]
 gi|257796383|gb|ACV67320.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692]
          Length = 429

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 149/408 (36%), Gaps = 38/408 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V+ +   L   LD          L  RD+ L   +V    R    ++ 
Sbjct: 9   PARQAALSCLEGVLLRDQELQASLDGVLDS---ASLEPRDRALATELVYGVCRHKTHLET 65

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
            +   +     R K  L+ +L V+  ++LYLD +  YA VD AV   K+    +  A + 
Sbjct: 66  AITRFVH-PKTRLKPRLRLILSVAAYEMLYLDRIPAYASVDWAVNAVKKRVAVQR-AGVA 123

Query: 125 NSILRRVSREKIE----------------LLQRIAGISIIPEWFKERLENFYGKERVLAI 168
           N++LRR++ +                     Q  A     PEW        YG +   ++
Sbjct: 124 NAVLRRLADDLHNRGRPAVVHELQAVRGSNDQAWAKAYSCPEWIVRLWRRAYGDQTAASL 183

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             A +    + L      +               ++      ++ ++   A      Q +
Sbjct: 184 LQASLQVPPVGLRFAPGPQG-DQAWQRWRHRPECLQAVARGVAVHNVDAAAVEELEAQGS 242

Query: 229 SASIP-------VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRC 281
           +A            L  +     + D C   GGKT      G  V + D  ++R++ L  
Sbjct: 243 AARQSLAAQEALWALEPSAWEGPLWDGCCGRGGKTLFCRELGFTVYSSDPHRQRVQLLAQ 302

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV-DAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
              R       I   DA     +      ++ D PCS  G + R PD  W R  +D+   
Sbjct: 303 QSSR-------ICLADAAYPPFRSGELRTVLLDVPCSGLGVLSRRPDSKWKRAPEDLQGL 355

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
              QR++L    + + PGG +V+  C+ + +++E+ +Q +    P  V
Sbjct: 356 VRLQRRMLEAAFALLPPGGRLVYMTCTCNPEENEDQIQWLCHREPGGV 403


>gi|254805144|ref|YP_003083365.1| putative SUN-family protein [Neisseria meningitidis alpha14]
 gi|254668686|emb|CBA06415.1| putative SUN-family protein [Neisseria meningitidis alpha14]
          Length = 418

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 167/446 (37%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+  +  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAETLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +   + L  +
Sbjct: 64  RCPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETAFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  +G+E +LA   +   P  +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWGEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + + K    Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   E  P+N A      + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKIDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418


>gi|254502118|ref|ZP_05114269.1| NOL1/NOP2/sun family protein [Labrenzia alexandrii DFL-11]
 gi|222438189|gb|EEE44868.1| NOL1/NOP2/sun family protein [Labrenzia alexandrii DFL-11]
          Length = 430

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 163/462 (35%), Gaps = 52/462 (11%)

Query: 1   MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK G   RL ++  +L  V R+   +  +L        F      D+ ++  +V   LR 
Sbjct: 1   MKDGG--RLAAAIEVLDEVERRHRPVQVVLKEWGSSHRFAG--SGDRTVIGNLVFDALRN 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              + A +                  L ++   + +                    E+RH
Sbjct: 57  RASLAAHMQDECPR-----------ALALATYVLTWDKG--------LEALTTVLNEDRH 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             + +           +    +    + +PEW   +    +G +  +    A      +D
Sbjct: 98  APEALTEAEADRLAAAVPDDLQPWQAADVPEWLWPKFTAVFGGD-AVTEGRALAQRAPVD 156

Query: 180 LTVKF---DIETWAHKLNAVM----------LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
           + V     D E    KL              +             + +  G+ +G + +Q
Sbjct: 157 MRVNTLKSDREKLLKKLGHTGAQGTGLSPHGMRIEAKPGLGRMPHVQAEEGYRKGWFDLQ 216

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +   L G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L
Sbjct: 217 DEASQLAALLAGAQPGQQVLDYCAGGGGKTLALAAAMQNKGQLYAYDADRLRLAPIHERL 276

Query: 284 DRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            R  +    + +  +      K   D V +DAPC+ TG  RR PD  W      +     
Sbjct: 277 QRAGVRNIQVRDPASSTLDDLKGQMDLVFIDAPCTGTGVWRRRPDSKWKLTEKALNDRMN 336

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--AYWKS 400
            Q  +L     +VK GG +V++ CSL  +++ + + + L ++     +  L+S  A    
Sbjct: 337 DQVHVLDNAKEYVKVGGRLVYATCSLLPEENADQISRFLSANADFAPVSALDSWTAMLPG 396

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +   ++  G + +TP         S+  DGFF   L R  
Sbjct: 397 KPVPAYVTERGDLTLTP--------ASTKTDGFFIAILERTA 430


>gi|303257735|ref|ZP_07343747.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderiales bacterium 1_1_47]
 gi|302859705|gb|EFL82784.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderiales bacterium 1_1_47]
          Length = 489

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 181/468 (38%), Gaps = 57/468 (12%)

Query: 1   MKSGMN--AR-------LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA 51
           MKS  N   R        ++   L  +++       L+ L + ++    L  R++ ++  
Sbjct: 1   MKSTHNGEVRITSLIVDELA-KALRKILKLDGPADVLMSLYFKNARH--LGPRERTIIAE 57

Query: 52  IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
            +  T+R L  I   +  V     P K   L  LL +++ Q     + D  +     E  
Sbjct: 58  AIYYTMRHLSMITWRMAPVC----PAKAPKLTGLLTLAL-QYGIDSIPDSTLGRE-KEPL 111

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           K     ++                          + +P+W  ++    Y   + L  +  
Sbjct: 112 KNMLRPKNS------------------EAPKEIQAEVPKWLYDKAVVQYTDHKALFEAMQ 153

Query: 172 CISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWW 224
             +PL + +  +K   +    +L    +     +            ++   P + EG   
Sbjct: 154 QSAPLDLRVNTLKATPDEVIEELTQHGVQAEKGQYSPECVRLNIKPALTQWPIYKEGKVD 213

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRC 281
           VQD  + +  +L        V D CA  GGKT     L+ S  ++ A DV+++RL  L  
Sbjct: 214 VQDEGSQLIARLVQPKRGEMVCDFCAGAGGKTLALGALMKSTGRIYAFDVNEKRLAGLTP 273

Query: 282 NLDRLHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            + R  L          E D          D VLVDAPCS TGT RR+PD+ W    +++
Sbjct: 274 RMRRAGLSNIHPAVIRNEHDLRVKRLYGKMDRVLVDAPCSGTGTYRRNPDLKWRFGEEEL 333

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    Q+ ++      +K GG +V++ CS+ ++++++V+   L  +P    L    ++Y
Sbjct: 334 DRINEIQKSVIRSAAKMLKAGGRLVYATCSILQRENQDVINDFLAENPDFRLL----NSY 389

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                  + +SP    R        +    +G DGFF   L ++ +P+
Sbjct: 390 EILGKQGIEISPYQAQRF--GDFFAMLPQLNGTDGFFGAVLEKV-KPE 434


>gi|293606189|ref|ZP_06688553.1| rRNA small subunit methyltransferase B [Achromobacter piechaudii
           ATCC 43553]
 gi|292815449|gb|EFF74566.1| rRNA small subunit methyltransferase B [Achromobacter piechaudii
           ATCC 43553]
          Length = 470

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 158/448 (35%), Gaps = 59/448 (13%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  +++        L           L  RD+  V   V   LR L R          S
Sbjct: 1   MLGEILQWTYPADAALSHWLRHHP--NLGARDRSEVAEAVYDVLRHLRRY----RQFGES 54

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            +     + ++L  + +             ++  ++ A+ +               +   
Sbjct: 55  GV---GPASRRLAILGL-----NATLGAEALEEGLDAAEAEWL-------------KRVS 93

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +        A    IP+W  ERL      +    + +A      +DL V     + +   
Sbjct: 94  QIDLSTLPRAVRGSIPDWLDERLALMDSPDT---LVEALNRQASLDLRVNPLKVERDAML 150

Query: 191 HKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
            +L                     E   +I   P F  G   VQD  + +   L      
Sbjct: 151 AELQQSAGRYEPVAMPFSPWGIRMEGRPAINRWPQFENGSIEVQDEGSQLLALLVAPRRG 210

Query: 243 LSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGKT     L+ S  ++ A DVS  RL + +    R  L     +    E
Sbjct: 211 EMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVVIDSE 270

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            DA           VLVDAPCS  GT+RR+PD+ W +    + +    Q ++L      V
Sbjct: 271 NDARVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQALAELGQLQERILNSAARCV 330

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
            PGG +V++ CSL  +++E   ++ L S P    L        +  ++ +      ++++
Sbjct: 331 APGGRLVYATCSLLAEENEVQAERFLASHPDFERLDAAEILASRCENLKL---EGPYLQL 387

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            PD+         G DGFFA    R  +
Sbjct: 388 RPDV--------HGTDGFFAAVFERKKK 407


>gi|223994911|ref|XP_002287139.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976255|gb|EED94582.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1014

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 121/508 (23%), Positives = 208/508 (40%), Gaps = 83/508 (16%)

Query: 7    ARLVSSHLLS--CVMRKRISLTCL---LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            AR ++ + L+          +            D  +  +  RD+   R +V    R L 
Sbjct: 513  ARSIAINALATSAASNSGAHVNAAAFATQQLEQDEHYNEMEARDRAFARLLVATVERRLG 572

Query: 62   RIDAVLDFVLISSLPRK---KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE-- 116
            +ID VL   +    P+K    + +Q  LR  VAQ+L+LD   +A     V+  +      
Sbjct: 573  QIDGVLGSCIEKYPPKKGKHSHLIQATLRTGVAQLLFLDTPPFAANKETVQVLRMHHHLS 632

Query: 117  -------NRHFAKLVNSILRRVSREKIELLQRIAGISIIPE------------------- 150
                        K VN + R++S      +  ++    IP+                   
Sbjct: 633  KTSTYPVPEPMVKFVNGVFRKLSEPLAADIDEMSTDDDIPKHLFGHQLLRESTTSKDNIA 692

Query: 151  -WFKERLENFYGKERVLAISDACIS------PLYIDLTVKFDIETWAHKLNAVMLPTGG- 202
             W  +R EN +G +    I +  +          IDL+ K+ +     K +   +     
Sbjct: 693  PWLLKRWENDWGDDLATLICEEMMPVDESSFTPRIDLSTKYSLGVVLKKQDDEGMMQQML 752

Query: 203  ---------------IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV-- 245
                                L   + S PG+ +G WWVQDAS+++P  +           
Sbjct: 753  EELGGDSTLLSQGSIRVGTSLKGDVKSWPGYDDGTWWVQDASSTLPALVLSQALYDKNGS 812

Query: 246  ----------LDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLY-AEDI 293
                      +D+CAAPGGKTA L+ +G  +VTA++ + RR  +L  NL+RL L     +
Sbjct: 813  DESVLSDINVVDMCAAPGGKTAALLSAGFGRVTAIEANARRSRRLVENLERLKLSEKCQV 872

Query: 294  IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI- 352
            +  +  ++ P +    +LVD PCS+TGT  R PDV   R   ++ +    Q  L      
Sbjct: 873  VVEEGQNWIPSEKVHGILVDVPCSATGTGARRPDV--LRRDPNLKELLTIQEILANHCAD 930

Query: 353  SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            + +  GG++V++ CS+ K++SE+ V K+++     +E +P+        + A  +   GW
Sbjct: 931  NVLDEGGLMVYATCSILKEESEDQVHKLIKR--GSMETLPIQPHEVPGFEGA--IDENGW 986

Query: 413  IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +R+ P +L+         DGFF   L +
Sbjct: 987  LRVLPGVLKGDLRS---TDGFFVARLVK 1011


>gi|257094375|ref|YP_003168016.1| Fmu (Sun) domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046899|gb|ACV36087.1| Fmu (Sun) domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 418

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 100/444 (22%), Positives = 157/444 (35%), Gaps = 55/444 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LLS ++R       ++   +       L   D+  V  IV   LR    + A        
Sbjct: 14  LLSELLRSAFPADLVVSNYFRQHR--ELGHADRGFVAEIVFAVLRRKRSLSA---RCADE 68

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R+              +   ++A       +   A                    ++
Sbjct: 69  VTSRRLLLAALACLQG---MNRRELAVVLNESESKWLA-------------------HAK 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
                   +A    +P+W    L   +  E +  ++     P  +DL V       +   
Sbjct: 107 AVKVDGLPVAVRLDLPDWLYALLTEQFSAEEIERLAAGLNQPAPLDLRVNSLKAGRQDVL 166

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
            +L A  L         L   +   P       F +G   VQD  + +   L        
Sbjct: 167 ARLLADGLTAEACPYSPLGIRLAGKPALSKYRLFVDGSIEVQDEGSQLLGFLLQPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V D CA  GGKT     L+ S  ++ A DV++RRL +L+  L R  L     +    E D
Sbjct: 227 VADFCAGAGGKTLLLGALMRSQGRLYAFDVAERRLARLKPRLARSGLSNVHPVRIDSERD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D VLVDAPCS  GT+RR+PD+ W +    I + +  Q  +L    + VKP
Sbjct: 287 IKIRRLAGKLDRVLVDAPCSGLGTLRRNPDLKWRQTPGSIAEMSTKQAVILAAAATLVKP 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CSL + ++EEVV+  L   P  V          + I +         +R+ P
Sbjct: 347 GGRLVYATCSLLEAENEEVVRSFLAGHPEFVTCSAQEVLATQGIMIDCGER----LRLLP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                      G D F+A  + R 
Sbjct: 403 H--------RHGTDAFYAAVMERK 418


>gi|303256329|ref|ZP_07342345.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
           bacterium 1_1_47]
 gi|330999024|ref|ZP_08322749.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
           excrementihominis YIT 11859]
 gi|302861058|gb|EFL84133.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
           bacterium 1_1_47]
 gi|329575766|gb|EGG57292.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
           excrementihominis YIT 11859]
          Length = 434

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 188/436 (43%), Gaps = 36/436 (8%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           +K +S+  +L+              ++   ++++   +R    +  +   ++  +     
Sbjct: 21  KKGLSIEKVLEGLPK-------DSENRSACQSVLYTAVRQRALLQKLSSDLISRAPAD-- 71

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             +  L+ +++  +       + VV+ AV  AK  ++    A  VN+ILRR  REK ELL
Sbjct: 72  -DVLALIELALGLLSEGKEKPFTVVNEAVAAAKHSRKMVKAANFVNAILRRFGREKTELL 130

Query: 140 QRIAGISII----PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI---ETWAHK 192
            +      +    P+W+  R       E+   I         + L V       E    K
Sbjct: 131 VKAEKQPTVRFNAPDWWIRR-YEAVFGEQTPEIFALQQKHPPMTLRVNTGKTSVEEAQAK 189

Query: 193 LNAVMLPTG----GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
           L    +P         +   P  +  +PGF EG   VQDA + +  +L      + VLD 
Sbjct: 190 LEKAGIPAERVGKFGLILLSPRPVKDVPGFLEGEVSVQDAGSQLAAELLDAKEGMRVLDA 249

Query: 249 CAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKK 305
           CAAPGGKTA  +  +   +TAL++  +R  ++  NLDRL L A        D   +   +
Sbjct: 250 CAAPGGKTAHSLELADVDMTALEIDPKRASRITENLDRLGLKAKVTVADAGDPKKWWDGR 309

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            F+ +L+DAPC+++G +RRHPD+ W+R  +DI K A  Q KLL      +   G ++++ 
Sbjct: 310 PFERILLDAPCTASGIVRRHPDIPWSRKPEDIAKLARTQGKLLETMWPLLANNGRILYAV 369

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+  ++    ++      P   +L+P+       + ++ A  PE    + P        
Sbjct: 370 CSVFPEEGPRGIEAFCARHP-DAKLIPIGPEGENLLSLSPAEGPETPGSVWPAT------ 422

Query: 426 VSSGMDGFFAVALRRL 441
                DGFF   L ++
Sbjct: 423 ----HDGFFYALLEKI 434


>gi|197104882|ref|YP_002130259.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Phenylobacterium zucineum HLK1]
 gi|196478302|gb|ACG77830.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Phenylobacterium zucineum HLK1]
          Length = 425

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 153/449 (34%), Gaps = 50/449 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L+ +  +   +   L      + +     +D+  V  +V   LR    +   + 
Sbjct: 8   AAAIEVLTEIEARHRPVRLALKAWGEAARYAG--AKDRAFVSGLVLDVLRRRRSLAWRMG 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                     + +    LR         D     +   A   A+        +    + L
Sbjct: 66  E------EGPRAAALGALR------FLWDWPLERI---AEAAAEDPHGPGPLSDAERAAL 110

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA------------ISDACISPL 176
                         A     P+W        +G+ R                 +   +  
Sbjct: 111 ETPRDLADAPP---AVRGDYPDWLDAGFARAFGEARAEEGAALAERAPVDLRVNTLKTDP 167

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
              L     +E     +    L            ++ ++P F++G + VQD  + I    
Sbjct: 168 ERALKALASVEARPTGVLPTALRIAAPDPAARGGAVEAIPQFSKGWFEVQDLGSQIAASA 227

Query: 237 FGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
            G +    VLDLCA  GGKT   A  + +  ++ A D   RRL       DR       +
Sbjct: 228 AGEVKGAQVLDLCAGGGGKTLALAAAMGNTGQIYAYDSDARRLTDTVRRGDRAGARNLQV 287

Query: 294 IEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                 +         D V VDAPC+ TG+ RRHPD  W    + + +    Q ++L   
Sbjct: 288 RSPVNPEPLKGLEGRMDVVFVDAPCTGTGSWRRHPDTKWRLTPEALARRQAEQDQVLDDA 347

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
             FVK GG +V+  CS+  ++ E+ V+  L+           + A      +A  L+P G
Sbjct: 348 ARFVKAGGRIVYVTCSVLPEEDEDRVEAFLQRHSGFARRAATDQAN-----LADYLTPAG 402

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +R++P         +SG DGFF   L +
Sbjct: 403 DLRLSP--------RTSGTDGFFVAVLEK 423


>gi|315230766|ref|YP_004071202.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
 gi|315183794|gb|ADT83979.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
          Length = 465

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 172/414 (41%), Gaps = 35/414 (8%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSV-AQILYLDVADYAVVD 105
            ++  +    ++    ID V++ ++  +       L+  LRV V   + +          
Sbjct: 65  RMLTMLFYDIMKKQGLIDRVINDIVGVNPLILDPWLRAALRVVVDVSLFHHSKPGTLKAL 124

Query: 106 LAVEQAKRDKENRHFAKLVNSILR----RVSREKIELLQRIAGISIIPEWFKERLENFYG 161
                     +   +  +    +     R         + +    I P W   R++   G
Sbjct: 125 KWKGSDFISSKTHPYVGMYYWDIFDKVIRYKPRPKSRDEFLEWKYIAPIWLIRRIKKLLG 184

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG---- 217
           +E             +  + V     T    + A+      +++ E   +IV + G    
Sbjct: 185 EETEQFFQAVNSKHSWTSIRVNTLKTTVDEVVEALRSEGKEVKVSERVPTIVKIKGPYDF 244

Query: 218 -----FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTAL 269
                F EG   VQ+ ++++   +      ++V+DL AAPGGKT+ +   + +  K+ A 
Sbjct: 245 DRSKLFREGKILVQEEASAVASLILDPKPGMTVVDLAAAPGGKTSHIAELMRNKGKIYAF 304

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHP 326
           D+ + R+++++  L R+ +    II  D         + + D VL+DAPC+S+GTI ++P
Sbjct: 305 DIDEFRIKRMKEILKRMGVNIVKIIRKDGRKAPKILGRGIADRVLLDAPCTSSGTIGKNP 364

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           ++ W    + I++ A  Q+ LL      +KPGG ++++ CSL  +++EE ++  L +   
Sbjct: 365 ELRWRLRENKILEIAELQKDLLKVAAQLLKPGGRLLYATCSLFPEENEENIEWFLGTY-D 423

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              L+PLN  Y +S  +      +G +R  P           G  GFF   L +
Sbjct: 424 NFRLIPLNGPYDESPLL------KGTMRAYPH--------RHGTIGFFYALLEK 463


>gi|224457583|ref|ZP_03666056.1| ribosomal RNA small subunit methyltransferase B [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254371058|ref|ZP_04987060.1| sun protein [Francisella tularensis subsp. tularensis FSC033]
 gi|254875277|ref|ZP_05247987.1| SUN protein [Francisella tularensis subsp. tularensis MA00-2987]
 gi|151569298|gb|EDN34952.1| sun protein [Francisella tularensis subsp. tularensis FSC033]
 gi|254841276|gb|EET19712.1| SUN protein [Francisella tularensis subsp. tularensis MA00-2987]
          Length = 426

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 191/448 (42%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +   QI  +    YA ++  V  A +  +     KLV
Sbjct: 57  KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112

Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R    I  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREMTRNIEYITSIYTQNKAIDMPEWLCDTLKKQYPNDHLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|241758624|ref|ZP_04756738.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           flavescens SK114]
 gi|241321135|gb|EER57331.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria
           flavescens SK114]
          Length = 419

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +   P  +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D          D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G +V++ CS+  +++E  V++ L   P   ELV           + + L    ++R+
Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-KFELVNCAELL---QSLKIDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   +      DGFFA  L+R 
Sbjct: 401 --------NSGEHQTDGFFATVLQRK 418


>gi|221199260|ref|ZP_03572304.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia multivorans CGD2M]
 gi|221205838|ref|ZP_03578853.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD2]
 gi|221211481|ref|ZP_03584460.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD1]
 gi|221168842|gb|EEE01310.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD1]
 gi|221174676|gb|EEE07108.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD2]
 gi|221180545|gb|EEE12948.1| putative ribosomal RNA small subunit methyltransferase B
           [Burkholderia multivorans CGD2M]
          Length = 421

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 156/445 (35%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     +       
Sbjct: 72  PARRLT-------LLGLMQ------------------TMGRNALKPFVSPAEAAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190
           +       +   + +P+W ++ L   +  E +  ++ A   P  +DL         E   
Sbjct: 107 KIDPASLPVRIRTNLPDWIQQALSTRFDAEELAQLAAALNYPAPLDLRANVLKATREQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 DALRANGIDAGETPFAPHGVRVVGKPALTRLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSVDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P    LVP         D  + L    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-DFVLVPAQKVL---ADQRIELETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                        DGFFA  L R  
Sbjct: 403 H--------RHATDGFFAAVLERRA 419


>gi|331000980|ref|ZP_08324616.1| putative ribosomal RNA small subunit methyltransferase B
           [Parasutterella excrementihominis YIT 11859]
 gi|329569755|gb|EGG51519.1| putative ribosomal RNA small subunit methyltransferase B
           [Parasutterella excrementihominis YIT 11859]
          Length = 507

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 181/468 (38%), Gaps = 57/468 (12%)

Query: 1   MKSGMN--AR-------LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA 51
           MKS  N   R        ++   L  +++       L+ L + ++    L  R++ ++  
Sbjct: 19  MKSTHNGEVRITSLIVDELA-KALRKILKLDGPADVLMSLYFKNARH--LGPRERTIIAE 75

Query: 52  IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
            +  T+R L  I   +  V     P K   L  LL +++ Q     + D  +     E  
Sbjct: 76  AIYYTMRHLSMITWRMAPVC----PAKAPKLTGLLTLAL-QYGIDSIPDSTLGRE-KEPL 129

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           K     ++                          + +P+W  ++    Y   + L  +  
Sbjct: 130 KNMLRPKNS------------------EAPKEIQAEVPKWLYDKAVVQYTDHKALFEAMQ 171

Query: 172 CISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWW 224
             +PL + +  +K   +    +L    +     +            ++   P + EG   
Sbjct: 172 QSAPLDLRVNTLKATPDEVIEELTQHGVQAEKGQYSPECVRLNIKPALTQWPIYKEGKVD 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRC 281
           VQD  + +  +L        V D CA  GGKT     L+ S  ++ A DV+++RL  L  
Sbjct: 232 VQDEGSQLIARLVQPKRGEMVCDFCAGAGGKTLALGALMKSTGRIYAFDVNEKRLAGLTP 291

Query: 282 NLDRLHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            + R  L          E D          D VLVDAPCS TGT RR+PD+ W    +++
Sbjct: 292 RMRRAGLSNIHPAVIRNEHDLRVKRLYGKMDRVLVDAPCSGTGTYRRNPDLKWRFGEEEL 351

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    Q+ ++      +K GG +V++ CS+ ++++++V+   L  +P    L    ++Y
Sbjct: 352 DRINEIQKSVIRSAAKMLKAGGRLVYATCSILQRENQDVINDFLAENPDFRLL----NSY 407

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                  + +SP    R        +    +G DGFF   L ++ +P+
Sbjct: 408 EILGKQGIEISPYQAQRF--GDFFAMLPQLNGTDGFFGAVLEKV-KPE 452


>gi|134301576|ref|YP_001121544.1| ribosomal RNA small subunit methyltransferase B [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049353|gb|ABO46424.1| ribosomal RNA small subunit methyltransferase B [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 426

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 191/448 (42%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +   QI  +    YA ++  V  A +  +     KLV
Sbjct: 57  KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112

Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R    I  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREMTRNIEYITSIYTQNKAIDMPEWLCDTLKKQYPNDHLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IRAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|323359995|ref|YP_004226391.1| tRNA and rRNA cytosine-C5-methylase [Microbacterium testaceum
           StLB037]
 gi|323276366|dbj|BAJ76511.1| tRNA and rRNA cytosine-C5-methylase [Microbacterium testaceum
           StLB037]
          Length = 457

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 166/463 (35%), Gaps = 41/463 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR V+  +L  V         LL           L  +D  L   +   TLR     DA+
Sbjct: 6   ARAVAYEVLRAVSGDEAYANLLLPHAIVR---ANLDAKDAGLATELTYGTLRRRGTYDAI 62

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +      ++ R   ++   LR+ V Q+L   VA +A V+ +VE A+R    R  A   N+
Sbjct: 63  IAAAADRTVDRIDPAVLDALRLGVHQLLSTRVASHAAVNESVELARRHGGGRGAAGFANA 122

Query: 127 ILRRVSREKIELLQRIAGI------------SIIPEWFKERLENFYGKE----RVLAISD 170
           +LRRVSR+                       +  P W    L      E     + A+ D
Sbjct: 123 VLRRVSRDTPGEWMDRIAATARSDDERIGVTTSHPVWIVRALRRALTAEGRADELGALLD 182

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQD 227
           A      + +     +        A          +   +    I +  G          
Sbjct: 183 ADNVAPRVAMVALPGLAEAPADATAARFAPTAFTTRGGGDPEGLIRASEGRIRVQDEGSQ 242

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +A    +          LDLCA PGGKTA L        A  +    +   R  L R  
Sbjct: 243 LAALALSRALPIREGERWLDLCAGPGGKTALLAAEALAHGA-HLDANEIAPARAGLVRQA 301

Query: 288 LY----AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           +       D+ E D  D   +    +D +LVDAPC+  G +RR P+  W +   D+    
Sbjct: 302 VASVPLDVDVSEEDGRDRAARAPGEYDRILVDAPCTGIGALRRRPEARWRKTPSDVPDLT 361

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--AYWK 399
             Q++L+L     +KPGG+V +  CS    ++  V+ +V R+    VE +   +      
Sbjct: 362 ALQQELVLAAFEALKPGGVVAYVTCSPHLAETSGVLAEVKRALGDSVEELDARAVVRSVA 421

Query: 400 SIDMAMALSPEGWIR--ITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++ +    +G +R  + P           G D      LR+
Sbjct: 422 LAEIDLPDQADGSLRAQLWPH--------RHGTDAMSIALLRK 456


>gi|224824670|ref|ZP_03697777.1| Fmu (Sun) domain protein [Lutiella nitroferrum 2002]
 gi|224603163|gb|EEG09339.1| Fmu (Sun) domain protein [Lutiella nitroferrum 2002]
          Length = 418

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 97/450 (21%), Positives = 159/450 (35%), Gaps = 63/450 (14%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  ++R       +L   + + A   L   D+ ++       LR   ++ AV+      
Sbjct: 13  VLGKMVRFDRPADAVLSAYFREHA--NLGANDRHVIAETAFACLRRFSQLKAVIAP--QK 68

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-RHFAKLVNSILRRVS 132
             PR         R+++A                   A+    N + F   +    R   
Sbjct: 69  PTPR---------RLALA-----------------TLARVRGLNLKEFGGSLKEEERNWV 102

Query: 133 REKIELLQRI--AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
            E          A  + +P W  ERL      E+++A+    I    +DL V       +
Sbjct: 103 AELKGKTLPDELAVQAELPAWVIERL-AEDTPEQIIALGRGMIESAPLDLRVNTLKMKRD 161

Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                L                       ++   P F +G   VQD  + +   + G   
Sbjct: 162 DALLALRRDGFEAEPTPFSPIGIRLKGKPALNRHPLFKDGSIEVQDEGSQLLGLITGARR 221

Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294
              V+D CA  GGKT      + S  ++ A DVS++RL   +    R  L          
Sbjct: 222 GEMVVDFCAGAGGKTLLLGAQMASTGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLIAH 281

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D          D VLVDAPCS  GT+RR+PD+ + +  + + +    Q  +L      
Sbjct: 282 ENDTRVKRLAGKADRVLVDAPCSGLGTLRRNPDLKFRQSPESVAELNAKQASILASASRL 341

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GG +V++ CSL  Q+++ +V+  L   P    LVP++    +               
Sbjct: 342 VKAGGRLVYATCSLLPQENQAIVEAFLAEHP-DFTLVPVSDVLAEQKIPLEM-------- 392

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                   +       DGFFA  L +  +P
Sbjct: 393 ---GDYLALRPDRHNTDGFFAAVLAK-QKP 418


>gi|118497926|ref|YP_898976.1| tRNA and rRNA cytosine-C5-methylases, sun protein [Francisella
           tularensis subsp. novicida U112]
 gi|194323149|ref|ZP_03056933.1| ribosomal RNA small subunit methyltransferase B [Francisella
           tularensis subsp. novicida FTE]
 gi|118423832|gb|ABK90222.1| tRNA and rRNA cytosine-C5-methylases, sun protein [Francisella
           novicida U112]
 gi|194322513|gb|EDX19993.1| ribosomal RNA small subunit methyltransferase B [Francisella
           tularensis subsp. novicida FTE]
          Length = 426

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 193/448 (43%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +   QI  +    YA ++  V  A +D +     KLV
Sbjct: 57  KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKDLKIIWAKKLV 112

Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R   ++  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREITRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QTKDTKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQVIKNLQSKILTNLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKQFLAKN---------NNAKIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2]
 gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2]
          Length = 451

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 94/413 (22%), Positives = 174/413 (42%), Gaps = 38/413 (9%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           +  I    ++    ID V+  ++  +       L+  LRV+V  +L+ D  +   +    
Sbjct: 55  LTKIFYDIMKKQGLIDKVIKDIVGVTPLILDPWLRAALRVTVDIVLFHD-PNSHTIKNLR 113

Query: 109 EQAKRDKENRHFAK------LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162
            +A     +R           +   +        + L+++    + P WF +R++   G+
Sbjct: 114 WKASDFISSRTHPYVGMYFWDLIDKILEYKPSPKDELEKLEWEYLAPAWFIQRVKKILGE 173

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL---------KELPESIV 213
           E             +I + V          +  +      +            + P +  
Sbjct: 174 ETEQFFKAVNEKHEWISIRVNTLKADVEEIIEELEEEGVEVIRSERVPTILKIKGPYNFD 233

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270
           S   F +G   VQ+ ++++   +        V+DL AAPGGKT  +   + +  K+ A D
Sbjct: 234 SSKAFKKGKIIVQEEASAVASIVLNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFD 293

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPD 327
           + K R+++L+  + R+ +     I  DA        +++ D VL+DAPC+S+GTI ++P+
Sbjct: 294 IDKMRMKRLKEFVQRMGIKIVKPIIKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPE 353

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W    + I + A  QR+LL      VKPGG ++++ CS+ K+++EE ++  L + P  
Sbjct: 354 LRWRLREEKIKEMAELQRELLESAAKLVKPGGRLLYTTCSIFKEENEENIKWFLANHP-E 412

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +LVPLNS Y            EG +R  P              GFF   L +
Sbjct: 413 FKLVPLNSPYDPGF-------LEGTMRAWPH--------RHSTIGFFYALLEK 450


>gi|187931420|ref|YP_001891404.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712329|gb|ACD30626.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 426

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 101/448 (22%), Positives = 192/448 (42%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +   QI  +    YA ++  V  A +  +     KLV
Sbjct: 57  KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112

Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R   ++  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREMTRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDHLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQPFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|329909344|ref|ZP_08275055.1| putative NOL1/NOP2/sun family protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546487|gb|EGF31480.1| putative NOL1/NOP2/sun family protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 420

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 101/445 (22%), Positives = 171/445 (38%), Gaps = 56/445 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L  ++R        L   + +     L  R++  +   +   LR       V      
Sbjct: 13  EILRDILRFTGPADGTLSRFFREHP--KLGSRERGAIAEGIYGVLRNKS----VYTSFSE 66

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S       +++++  + +A  +  D       + A       + +R     V        
Sbjct: 67  SG---NGPTMRRMTLLGLAGAVGADALGGLSEEEAAWLEHTMQIDRTLLPAV-------- 115

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETW 189
                        S +P+W  ++L    G+E  LA++ A   P  +DL V       E  
Sbjct: 116 -----------MRSNLPQWLFDKLVAREGEEGALALAAALNEPAPLDLRVNVIKASREEV 164

Query: 190 AHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +         +   +       +LP F +G+  VQD  + +  Q+ G     
Sbjct: 165 MAALAEAPILAEITPFSPVGLRVLKKPALQNLPLFRDGLIEVQDEGSQLLAQIVGAKRGE 224

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296
            V+D CA  GGKT      + +  ++ A D+S++RL KL+  L R  L          E 
Sbjct: 225 MVVDFCAGAGGKTLALGAAMRNTGRLYAFDISEKRLAKLKPRLARSGLSNVHPVQIAHEN 284

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           DA         D VLVDAPCS  GT+RR+PDV W +    + +    Q  +L      VK
Sbjct: 285 DAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDVKWRQTLVGVAELNVKQTSILSGAARMVK 344

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CSL  +++E++V   L +      LVP+     +     + L  + ++++T
Sbjct: 345 TGGRLVYATCSLLDEENEDIVSAFLSTH-ADFVLVPMKDVLAE---QRVELEMQDYLKLT 400

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P             DGFFA    R+
Sbjct: 401 PS--------QHQTDGFFAAVFERI 417


>gi|23500111|ref|NP_699551.1| sun protein [Brucella suis 1330]
 gi|23463705|gb|AAN33556.1| sun protein, putative [Brucella suis 1330]
          Length = 429

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +   + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 L R      + L      +L  D  D  +VD           +R   + +++  
Sbjct: 61  ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R   + +          + +PEW    LE  +G ER ++   A  +   +DL V     T
Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235
               L A+                    E++   P       F +G + VQD  + +   
Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +    
Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +              D VL DAPC+ +GT RR PD  W  +   + +    Q+ +L    
Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG + +  CSL  +++   V + L  +P   E+ P         D +        
Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +          +S+G DGF+   L+R
Sbjct: 402 --VFLSHGSVFSPLSTGTDGFYVSILQR 427


>gi|332529827|ref|ZP_08405781.1| fmu (sun) domain protein [Hylemonella gracilis ATCC 19624]
 gi|332040848|gb|EGI77220.1| fmu (sun) domain protein [Hylemonella gracilis ATCC 19624]
          Length = 428

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 154/457 (33%), Gaps = 64/457 (14%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           + + L+   ++       ++   + D     L  R++  +       LR     + +   
Sbjct: 9   LCAELVRLTLKFEHPADAVVSHFFRDHR--GLGPRERATLAETAYAVLRKKLLFERL--A 64

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +  S    +        R+++           +V+    +Q                   
Sbjct: 65  LSGSGPKER--------RLAILGFSGSRDFIKSVLSEQEKQW-----------------L 99

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
                             +P+W  + L+     +   A++++      +D+ V       
Sbjct: 100 DACDGVKPDELLDQHRHNLPDWLAQPLKTQLSDKDFWALAESLNQSAGLDVRVNTLNSKR 159

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240
           E    +L A  +             I   P       F  G   VQD  + +   L    
Sbjct: 160 EDVQRELKAAGITAQPTPYCPWGLRIADKPALNKLDVFTRGAIEVQDEGSQLLALLVEAK 219

Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
               V+D CA  GGKT      + +  ++ A D S  RL+ L+  L R  L         
Sbjct: 220 RGEMVVDFCAGAGGKTLALGAAMRNTGRLYAFDTSAHRLDALKPRLARSGLSNVHPAAIA 279

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ W +    + + A  Q  +L     
Sbjct: 280 HERDERVKRLSGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVQEMAAKQTAILDSAAR 339

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--- 410
            +K GG +V++ CS+  +++E V +    + P   E VP+     + +   +A +     
Sbjct: 340 LLKSGGRLVYATCSVLPEENEAVAEAFSAAHP-DFEPVPVADLLERLLAPPVAKTASELC 398

Query: 411 -------GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   ++R+ P             DGFFA    +
Sbjct: 399 SGGESGRNYLRLWPH--------QHNTDGFFAAVWHK 427


>gi|148261637|ref|YP_001235764.1| Fmu (Sun) domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146403318|gb|ABQ31845.1| Fmu (Sun) domain protein [Acidiphilium cryptum JF-5]
          Length = 415

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 154/442 (34%), Positives = 218/442 (49%), Gaps = 31/442 (7%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M    G   R  +  LLS V+ +R  L   L      +    ++ RD+     I    LR
Sbjct: 1   MTKTGGDPTRDAAFALLSAVLDRRAPLDAAL------AGLADIAPRDRAAAHRIAAAVLR 54

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            L  +DA+L+  L  + P     ++ +LR+  AQ+  L    +A V  AV  A      +
Sbjct: 55  RLGSLDAILEPHLRRAPP---APVRHILRIGAAQLALLGAPAHAAVSTAVGLAHARGLGK 111

Query: 119 HFAKLVNSILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            FA LVN++LR+VS +    L+   +     P W               AI+        
Sbjct: 112 -FAGLVNAVLRKVSADGAAALEALDSPRLDTPAWLWASWGAA-----ARAIATTHQGEAP 165

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           +DLT+    +  A       LPTG +RL      +  L G+A G  WVQDA+A++P +L 
Sbjct: 166 LDLTL---KDGAAVPEGGERLPTGSVRLPAGT-DVTQLYGYAAGTLWVQDAAAALPARLL 221

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           G +    VLDLCAAPGGKTAQL  +GA VTALD   RRL +LR NLDRL L AE +   D
Sbjct: 222 GDVAGRRVLDLCAAPGGKTAQLAAAGAAVTALDRDARRLARLRENLDRLGLAAETV-AAD 280

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A D+ P + FDA+L+DAPCS+TGTIRRHP++L  R   DI   A  Q +LL    + + P
Sbjct: 281 ALDWRPAQRFDAILLDAPCSATGTIRRHPEILHLRRPRDIETCAALQDRLLDAAAAMLAP 340

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CSL  ++    ++         + L        +   +A A++P G +   P
Sbjct: 341 GGTLVYAVCSLQPEEGARRIEAACGR----LGLRRAPLGAAELPGLAEAVTPAGDLATHP 396

Query: 418 DMLEKIDGVSSGMDGFFAVALR 439
            M  +      GMDGFFA  L+
Sbjct: 397 GMWAE----RGGMDGFFAARLQ 414


>gi|254294173|ref|YP_003060196.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
 gi|254042704|gb|ACT59499.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
          Length = 435

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 160/450 (35%), Gaps = 44/450 (9%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            +  +L+ V+ +   +          + +     +D+  V  +V   LR    +   +  
Sbjct: 9   AAISVLTDVLTRHQPVKSAAKDWGKRARYAG--SKDRAWVSGLVLDALRNKLSLAHAMG- 65

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                        + L+  ++  +   D+     VD A +Q        H    +    R
Sbjct: 66  -SDEP--------RALVLGALTHVWKWDI---GRVDEAFDQ-------DHAPSALTLDER 106

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                  + +         PEW    +E  +G+E V+   +  +    +DL +       
Sbjct: 107 ERLVMAPDPVAPAHVRGDYPEWMHGMMERAFGEEAVIEAQEMAVRAP-VDLRINTLKAEV 165

Query: 190 AHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQL 236
                A+                           S+ S+P +++G   VQDA + +    
Sbjct: 166 EKVEKALRSVHAEPIPTLKNGYRIPAPDPSVRANSVESIPAYSKGWVEVQDAGSQMAAAG 225

Query: 237 FGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   VLD CA  GGK    A  + +  ++ A D+  RRL  +   L R       +
Sbjct: 226 ANAQPGEQVLDYCAGGGGKSLAMASTMQNKGQIYAYDIEGRRLSAMIPRLQRAGARNVQL 285

Query: 294 IEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                D      +   D V++DAPCS  GT RR PD  W    + +      Q ++L + 
Sbjct: 286 RHPQEDKGLNDLELNMDLVIIDAPCSGVGTWRRRPDSKWRLKENSLNLRRQQQTEILHKA 345

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
            +FVKPGG +++  CS   +++E+ V   L       +   ++SA       A   +   
Sbjct: 346 CNFVKPGGRLLYITCSFLMEENEDQVASFLADRSDFSQEDVVDSAIQSGQLTAEGEAM-- 403

Query: 412 WIRI-TPDMLEKIDGVSSGMDGFFAVALRR 440
             R   P    ++   ++G DGFF   +RR
Sbjct: 404 MARCKRPGGSVRLTPRTAGTDGFFMALMRR 433


>gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 450

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 102/410 (24%), Positives = 172/410 (41%), Gaps = 39/410 (9%)

Query: 52  IVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109
           ++   L+    +D V++ VL     +      ++   R++V ++++ D     V D+   
Sbjct: 53  LLYSVLQKRGLLDEVIEDVLEITDDVTELDTWVRNAARIAVNEVVFEDGDPDEVADVLHG 112

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIA---GISIIPEWFKERLENFY-GKERV 165
             +R       A +    L     E  E    +         P W  ER    +   + V
Sbjct: 113 LVRRLANPGAAAIVKAFTLDLKDYEPPEPEDELDRLKWEYYHPRWLIERWMEMFGDPDEV 172

Query: 166 LAISDACISPLYIDLTVKF---DIETWAHKLNAV-------MLPTGGIRLKELPESIVSL 215
           +A+ +A      + + V     D E  A +L                I        I  +
Sbjct: 173 VALLEANNRRPPLTIRVNTLKVDPEELAERLQRKYRVTVEPGRFLDEILKIPEGLPIGEM 232

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVS 272
           P + EG++ +QD +A++   +        V+DLCAAPGGKT  +   +    K+ A+DV 
Sbjct: 233 PEWEEGLFVIQDEAAALASAVLNPKPGEVVVDLCAAPGGKTTHMAQLMGGEGKIVAIDVD 292

Query: 273 KRRLEKLRCNLDRLH-LYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDV 328
           + R+E+LR   +R+  L   +   MD  +   K   +  DAVLVD PCS+ GTI ++P+ 
Sbjct: 293 EVRMERLREIAERMGVLDCIETHLMDGREAPEKLGREFADAVLVDPPCSADGTIPKNPER 352

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            W    D++ +   FQ +LL  G   VKPGG +++S CS+  ++ EEVV++ L   P   
Sbjct: 353 RWRITPDELERLPKFQYELLKAGAEMVKPGGRLLYSTCSMFPEEDEEVVRRFLDEHP-EF 411

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           EL+ +       +       PE   R+ P              GFF   +
Sbjct: 412 ELLEVK------VGDQGFDMPEAC-RLFPH--------RHETCGFFIALM 446


>gi|121606107|ref|YP_983436.1| Fmu (Sun) domain-containing protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595076|gb|ABM38515.1| Fmu (Sun) domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 417

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 156/444 (35%), Gaps = 55/444 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  V++       ++   + +     L  R++  V   +   LR       +      
Sbjct: 12  ELLKQVLKFDHPADMVVSRYFREMR---LGPRERATVAETIYGVLRKKNLYTYLAQHGSG 68

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
               R       +L              +A     +  A  ++E    ++        + 
Sbjct: 69  VPERRL-----AIL-------------GFAAPRDFLYGALTEQEEDWLSRCDQVKPSDLM 110

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA-- 190
                          +P+W  E L+   G +    + ++  +   +DL V    +  A  
Sbjct: 111 ELH---------RHNLPQWLVEPLKAQLGDDFW-PLVESLNTQAGLDLRVNTLKDKRADV 160

Query: 191 ------HKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                   +  V  P     L+   +  + ++  F  G   VQD  + +   L       
Sbjct: 161 QKELARAAIKTVATPYSPWGLRLEGKPQLANVDAFKRGAIEVQDEGSQLLALLVDAKRGE 220

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296
            V+D CA  GGKT      + +  ++ A D S  RL  L+  L R  L          E 
Sbjct: 221 MVVDFCAGAGGKTLALGASMRTTGRLYAFDTSAHRLAALKPRLARSGLSNVHPVAIAHER 280

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D          D VLVDAPCS  GT+RR+PD+ W  +   I +    Q  +L      VK
Sbjct: 281 DDRIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRHNPKAIEELTAKQTAILQSAARLVK 340

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V++ CS+ ++++E + +    ++P    +          ++ A  L    ++R+ 
Sbjct: 341 PGGRLVYATCSILREENEAIAEAFSAANPDFQVVEAAPLLTHIGVEHADKLCRGPYLRLW 400

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P             DGFFA   ++
Sbjct: 401 P--------YLHQTDGFFAAVWQK 416


>gi|254374738|ref|ZP_04990219.1| sun protein [Francisella novicida GA99-3548]
 gi|151572457|gb|EDN38111.1| sun protein [Francisella novicida GA99-3548]
          Length = 426

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 193/448 (43%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +   QI  +    YA ++  V  A +D +     KLV
Sbjct: 57  KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKDLKIIWAKKLV 112

Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R   ++  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREITRNINDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQVIKNLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAKIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|186474810|ref|YP_001856280.1| sun protein [Burkholderia phymatum STM815]
 gi|184191269|gb|ACC69234.1| sun protein [Burkholderia phymatum STM815]
          Length = 453

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 108/448 (24%), Positives = 174/448 (38%), Gaps = 29/448 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R+  +L   L   +  S    ++   +  V+ I   T+R L   + ++  +
Sbjct: 16  AAQAVGAV-RQGAALPAALHSIFV-SLPEGVATASRGAVQDIAYRTMRRLGTAEWLVAKL 73

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +     P   + L   L + V +        + VVD AV      +E+     L N++LR
Sbjct: 74  VRKAPPPHVAHVLACALALLVDEASNAAYTPFTVVDQAVNAIGARRESSFAKGLTNAVLR 133

Query: 130 RVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
              RE+     +  +        P W+ + + N +       ++        + L V   
Sbjct: 134 NFLRERETLLGDAQKDAVAHWNYPVWWIDAVRNAWPDAWQDILTAGNNQGP-LTLRVNAR 192

Query: 186 IETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             T    L  +                 E P  +  +PGF EGV  VQDA A +  Q  G
Sbjct: 193 RATVDAYLQTLREHQISATQAGDQAVRLETPMPVDRIPGFNEGVASVQDAGAQLAAQWLG 252

Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
             + + VLD CAAPGGKT  L+  +   + AL+    R  ++  NL RL L A  +   D
Sbjct: 253 VRDGMRVLDACAAPGGKTGHLLELADIDLIALESDATRARRIGENLQRLGLSA-HVRVGD 311

Query: 298 -----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                 +       FD +L D PCS++G +RRHPD+ W R   DI      QR++L    
Sbjct: 312 AGSPEQWHDAADAPFDRILADVPCSASGIVRRHPDIRWLRRASDIPVLVEEQRRILEALW 371

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
           + VKPGG +++  CS+  ++ E   Q         V L                +S    
Sbjct: 372 TLVKPGGELLYVTCSIFPEEGELQAQWFGNRHADAVRLDAPGQLLPAVARAPADVSAG-- 429

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +  G S   DGFF    ++
Sbjct: 430 -----SRAGQSTGSSLDHDGFFYARFQK 452


>gi|208779665|ref|ZP_03247010.1| ribosomal RNA small subunit methyltransferase B [Francisella
           novicida FTG]
 gi|208744626|gb|EDZ90925.1| ribosomal RNA small subunit methyltransferase B [Francisella
           novicida FTG]
          Length = 426

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/448 (22%), Positives = 193/448 (43%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +   QI  +    YA ++  V  A +D +     KLV
Sbjct: 57  KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETVT-ACKDLKIIWAKKLV 112

Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R   ++  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREITRNINDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              + +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QNKNNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IKAANNDKILDACAAPGGKTSHILEYAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQVIKNLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|56708432|ref|YP_170328.1| Sun protein [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670903|ref|YP_667460.1| Sun protein [Francisella tularensis subsp. tularensis FSC198]
 gi|56604924|emb|CAG46016.1| Sun protein [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321236|emb|CAL09399.1| Sun protein [Francisella tularensis subsp. tularensis FSC198]
 gi|282159623|gb|ADA79014.1| Sun protein [Francisella tularensis subsp. tularensis NE061598]
          Length = 426

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/448 (22%), Positives = 190/448 (42%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +        LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIGQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +   QI  +    YA ++  V  A +  +     KLV
Sbjct: 57  KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112

Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R    I  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREMTRNIEYITSIYTQNKAIDMPEWLCDTLKKQYPNDHLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|325520796|gb|EGC99806.1| Sun protein [Burkholderia sp. TJI49]
          Length = 421

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 157/445 (35%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    S
Sbjct: 14  LLAEVLKFTGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFAHLAESGTGS 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     +       
Sbjct: 72  PARRLT-------LLGLMQ------------------TMGRNALKPFVSPAEAAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +   + +P+W ++ L N +  E +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRIRTNLPDWIQQALSNRFEAEELAQLAAALNYPAPLDLRANALKASRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A  +  G          +        L  F +G   VQD  + +   L        
Sbjct: 167 DALRANGIDAGATPFAPFGVRVVGKPALTRLKLFEDGQIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSIDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P    LVP         D  + L    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-DFVLVPAQKVL---ADQRIELETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                        DGFFA  L R  
Sbjct: 403 H--------RHATDGFFAAVLERRA 419


>gi|326405127|ref|YP_004285209.1| RNA methyltransferase [Acidiphilium multivorum AIU301]
 gi|325051989|dbj|BAJ82327.1| RNA methyltransferase [Acidiphilium multivorum AIU301]
          Length = 418

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 154/442 (34%), Positives = 218/442 (49%), Gaps = 31/442 (7%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M    G   R  +  LLS V+ +R  L   L      +    ++ RD+     I    LR
Sbjct: 4   MTKTGGDPTRDAAFALLSAVLDRRAPLDAAL------AGLADIAPRDRAAAHRIAAAVLR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            L  +DA+L+  L  + P     ++ +LR+  AQ+  L    +A V  AV  A      +
Sbjct: 58  RLGSLDAILEPHLRRAPP---APVRHILRIGAAQLALLGAPAHAAVSTAVGLAHARGLGK 114

Query: 119 HFAKLVNSILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            FA LVN++LR+VS +    L+   +     P W               AI+        
Sbjct: 115 -FAGLVNAVLRKVSADGAAALEALDSPRLDTPAWLWASWGAA-----ARAIATTHQGEAP 168

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           +DLT+    +  A       LPTG +RL      +  L G+A G  WVQDA+A++P +L 
Sbjct: 169 LDLTL---KDGAAVPEGGERLPTGSVRLPAGT-DVTQLYGYAAGTLWVQDAAAALPARLL 224

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           G +    VLDLCAAPGGKTAQL  +GA VTALD   RRL +LR NLDRL L AE +   D
Sbjct: 225 GDVAGRRVLDLCAAPGGKTAQLAAAGAAVTALDRDARRLARLRENLDRLGLAAETV-AAD 283

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A D+ P + FDA+L+DAPCS+TGTIRRHP++L  R   DI   A  Q +LL    + + P
Sbjct: 284 ALDWRPAQRFDAILLDAPCSATGTIRRHPEILHLRRPRDIETCAALQDRLLDAAAAMLAP 343

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CSL  ++    ++         + L        +   +A A++P G +   P
Sbjct: 344 GGTLVYAVCSLQPEEGARRIEAACGR----LGLRRAPLGAAELPGLAEAVTPAGDLATHP 399

Query: 418 DMLEKIDGVSSGMDGFFAVALR 439
            M  +      GMDGFFA  L+
Sbjct: 400 GMWAE----RGGMDGFFAARLQ 417


>gi|16125866|ref|NP_420430.1| sun family protein [Caulobacter crescentus CB15]
 gi|221234628|ref|YP_002517064.1| 16S rRNA m(5)C 967 methyltransferase [Caulobacter crescentus
           NA1000]
 gi|13423020|gb|AAK23598.1| sun family protein [Caulobacter crescentus CB15]
 gi|220963800|gb|ACL95156.1| 16S rRNA m(5)C 967 methyltransferase [Caulobacter crescentus
           NA1000]
          Length = 425

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 94/450 (20%), Positives = 159/450 (35%), Gaps = 57/450 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            +  +L+ +  +   +   L      + +     +D+  V  +V   LR    +  ++  
Sbjct: 9   AAIEVLTEIEARHFPVKMALKRWGETARYAG--SKDRAFVSGLVLDGLRRKRSLGWMMAD 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                +            + V  + +                A+   E   F  L +   
Sbjct: 67  STARGV-----------MLGV--LAFVWKWP-------LERIAEAAAEEHGFGALTDVER 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI-- 186
            R++                P+W +  L    G ++   +  A      +DL V      
Sbjct: 107 ERLAAPVPIEGAPAPVAGDYPDWLEPHLARALGADQAAEM-RALSERAPVDLRVNTLKTD 165

Query: 187 -----------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                      +     + A           +   S+ ++P F++G + VQD  + I   
Sbjct: 166 VERCAKALALIDAAPAGVLATAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAA 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           + G +    VLD CA  GGKT   A  + +  ++ A D   RRL        R  +    
Sbjct: 226 VAGDVKGKQVLDFCAGGGGKTLALAAAMGNSGQIFAHDSDARRLADTIRRGQRAGVRNLQ 285

Query: 293 IIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           I                D V VDAPC+  GT RRHPD  W    D + K    Q  +L  
Sbjct: 286 IRSPIEATPLKGLEGKIDVVFVDAPCTGAGTWRRHPDAKWRLSPDQLAKRQIEQDSVLED 345

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             +FVK GG +++  CSL  +++E+ V   L   P              ++D    ++PE
Sbjct: 346 AAAFVKAGGRMIYVTCSLLTEENEDRVAAFLERHPEFTV-------KPIALDGVTHVTPE 398

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G++R+TP          +G DGFFA  L+R
Sbjct: 399 GYLRLTPH--------RAGTDGFFAAVLQR 420


>gi|304415449|ref|ZP_07396098.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus
           Regiella insecticola LSR1]
 gi|304282713|gb|EFL91227.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus
           Regiella insecticola LSR1]
          Length = 390

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 173/371 (46%), Gaps = 19/371 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++ +++ V+ K  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKTTYNIRAIAAKVINNVLNKGKSLSVVLPAL-----QQNISDKDRTLLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK--RDKENR 118
           P ++  +  +++  +  KK  L  LL + + Q++Y  +  +A +   V  A   +  + +
Sbjct: 56  PTLEFCIQQLMVRPMEGKKRILHYLLMIGIYQLIYTRIPAHAALAETVAGATTLKWPQLK 115

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLY 177
                V    +R     +E         + P W  ER++  Y ++    +       P++
Sbjct: 116 GLVNGVLRQFQRQQIMLLEQATNDNSHYLHPNWLLERIKKAYPEQWQQIVVANNTKPPMW 175

Query: 178 IDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASA 230
           + +  +      +   L    +      +        LP  +  LPGF++G   VQDASA
Sbjct: 176 LRVNRIHHSRSQYLALLQQAGIEAISHPVYADAIRLTLPCPVGQLPGFSQGWVTVQDASA 235

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
              + L    N   +LDLCAAPGGKT     +   A+V A+D+ K+RL  ++ NL RL L
Sbjct: 236 QGCIDLLHPKNGEYILDLCAAPGGKTTYILEVAPKAEVLAVDIDKQRLRCVKENLQRLQL 295

Query: 289 YA-EDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            A   I +    D    +  FD +L+DAPCS+TG IRRHPD+ W R   DI +    Q +
Sbjct: 296 QARIKIGDGRTPDIWCGEQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELTKLQAE 355

Query: 347 LLLQGISFVKP 357
           ++      +K 
Sbjct: 356 IMDAIWPKIKK 366


>gi|294341635|emb|CAZ90052.1| putative rsmB (sun protein) (Fmu, rRNA SAM-dependent
           methyltransferase) [Thiomonas sp. 3As]
          Length = 459

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 172/452 (38%), Gaps = 39/452 (8%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+  V +   SL+  L        +       +   +A+    LR L    A+L  
Sbjct: 24  ACAQLIGAV-KAGASLSTALPQAATRGKW---DASQRGAAQALSFAVLRHLGTARALLAD 79

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADY----AVVDLAVEQAKRDKENRHFAKLVN 125
           +    +      L+ +L+ ++A +L  D   +     VV+ AVE  KR    RH     N
Sbjct: 80  LQPKPIH--PPLLRDVLQTALALLL-PDAPAHYAAHTVVNQAVEACKRTPSLRHAQGFAN 136

Query: 126 SILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP-LYIDL 180
           ++LRR      +     +  +      P+W+ + L++ Y  +    +  A   P + + +
Sbjct: 137 ALLRRFVSRTADIEAVRMSTLEARWNHPDWWVQALQSAYPADWQSVLEVAQRQPAMTLRV 196

Query: 181 TVK-FDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
             +      +   L A  LP             + +   ++  LPGF  G   VQDA+A 
Sbjct: 197 NPRLQSRTAYQAALAACGLPCTAPDDPLLDQALILKQAVAVERLPGFERGWVSVQDAAAQ 256

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
               L        VLD CAAPGGKTA L       + ALD   +RL ++   LDRL L A
Sbjct: 257 YAAALLDVQPGQRVLDACAAPGGKTAHLLERCDCDLLALDKDAQRLRRVEDTLDRLGLQA 316

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                       +   + FD +L+DAPCS++G  RRHPD+ W R   DI   A  Q  LL
Sbjct: 317 RTLAADAAHPATWWDGQPFDRILLDAPCSASGIARRHPDIRWLRRAADIPALAATQAALL 376

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 ++PGG +++  CS+  Q+  E  +  L      +   P                
Sbjct: 377 DALWPLLRPGGKLLYVTCSVFPQEGVEQARAFLARYADAI-ASPAPGQLLPQEPAPDQTG 435

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E                    DGFF     +
Sbjct: 436 DE----------PGPGAAIHSQDGFFYALFTK 457


>gi|118594095|ref|ZP_01551442.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181]
 gi|118439873|gb|EAV46500.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181]
          Length = 423

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 168/393 (42%), Gaps = 20/393 (5%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ ++  V+    +L  + +    +          Q  V+AI   TLR++ + + ++ 
Sbjct: 6   RYAAIIIDGVLD-GNNLDHVFEKILKNPD----DSVQQSQVKAITYGTLRYMGQSNYLIG 60

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH--FAKLVNS 126
            ++ + +      L+ L+ V++ Q+      D+ VVD AV  AK+    +      ++ +
Sbjct: 61  KLIKNKIE--NRVLESLIHVAIYQLTQEAHTDFTVVDQAVRAAKKIDFRKSNLVNAVLRT 118

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
            LR   +       +       P W+ ++++  Y  E    +         + + V    
Sbjct: 119 FLRNKEKLIQGFAGQSESKYNYPLWWVDKMKEQYV-EHWEDVLRIGNVHPPMTIRVNKKK 177

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            T     + +        L            +++ +PGF EG + VQD  A +  +    
Sbjct: 178 ITVEKYSDILRSNNINHVLIHGNALIIDTPINVMDVPGFVEGYFSVQDYGAQLASEYLDL 237

Query: 240 LNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-- 296
            +   VLD CAAPGGKT  +      ++ +L+ +  R  ++  NL RL L A+ I E   
Sbjct: 238 EDGHWVLDACAAPGGKTTSILESHDVRLVSLEKNPLRALRIEENLLRLGLQAKVIKEPLD 297

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           +   +  ++ FD +L+D PCS++G +RRH D+ W R   D V     Q +LL      +K
Sbjct: 298 NDNKWWDRQAFDRILLDVPCSASGIVRRHIDIKWLRRPSDFVNYGKSQLELLNNAWPLLK 357

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
             G +++  CS+ ++++ +V+     +    + 
Sbjct: 358 KNGKLLYVTCSVFQEENCDVIAAFCENHKDAIR 390


>gi|258542592|ref|YP_003188025.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633670|dbj|BAH99645.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636729|dbj|BAI02698.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639782|dbj|BAI05744.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642838|dbj|BAI08793.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645893|dbj|BAI11841.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648946|dbj|BAI14887.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651933|dbj|BAI17867.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654990|dbj|BAI20917.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 437

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 102/440 (23%), Positives = 172/440 (39%), Gaps = 44/440 (10%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
           R     + +  + +  +  +   D+  +  +V   +R   R+   L+         K   
Sbjct: 22  RKPADAVANSFFRERRY--MGGGDRRAISGLVWDVMRAWRRLGWWLEQ--------KGQV 71

Query: 82  LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
               LR    ++L+ D    A V+   EQ  R          ++ +     +        
Sbjct: 72  ASARLRAGA-RLLF-DGFSLAEVEEMFEQ-GRFAAGALTRGELSILTPLAGKTLDNPEMP 128

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--------DIETWAHKL 193
            A    +P+W    L +    +++     A  +P  +DL V                  L
Sbjct: 129 RAVRLELPDWLLPHL-DATFGDKLEDELAAMSAPAPLDLRVNILRGPRKEAQRSLACEGL 187

Query: 194 NAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           +A   P     L+      + +   F +G+  +QD  + +   + G    + VLD CA  
Sbjct: 188 HAEPTPLSPWGLRLPARLPVTTSVAFRDGLVEIQDEGSQLVAAISGVEPQMRVLDYCAGA 247

Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPKKL 306
           GGK    A ++ +   + A DVS  RLE     L R  ++  +       D +       
Sbjct: 248 GGKTLAMAMMMENKGHIVACDVSAPRLEGAVKRLRRAGVHNVERHLLVPGDKWAKRRAGS 307

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VLVDAPCS TGT RR+PD  +     D+ +    Q  ++ +  + V+ GG +V++ C
Sbjct: 308 FDRVLVDAPCSGTGTWRRNPDARFRTTEQDLTELLEKQAAIMDRAAALVRAGGRMVYATC 367

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL + ++ + V   L   P   +LVP +     S DM  AL  E  I +TP        +
Sbjct: 368 SLLRAENMDQVAAFLARHP-DFKLVPSD-----SPDMPEALRKESSISLTP--------L 413

Query: 427 SSGMDGFFAVALRRLI-QPK 445
             G DGFFA  + R   +P+
Sbjct: 414 RDGTDGFFAAVMERAAPEPE 433


>gi|206561059|ref|YP_002231824.1| NOL1/NOP2/Sun family protein [Burkholderia cenocepacia J2315]
 gi|198037101|emb|CAR53022.1| NOL1/NOP2/Sun family protein [Burkholderia cenocepacia J2315]
          Length = 421

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 154/445 (34%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGT 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     S       
Sbjct: 72  PARRLT-------LLGLMQ------------------TVGRNALKPFLSDTESAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +   + +P+W  + L   +  E +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALSERFDAEELAQLAAALNYPAPLDLRANAQKASRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 EALRVSGIDAGATPFAPFGVRVVGKPALTRLKLFEEGAIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A DVS++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTAIDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P    LVP         D  + L    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-DFVLVPAQKVL---ADQRIELETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                        DGFFA  L R  
Sbjct: 403 H--------RHATDGFFAAVLERRA 419


>gi|152980769|ref|YP_001354259.1| Sun family protein [Janthinobacterium sp. Marseille]
 gi|151280846|gb|ABR89256.1| Sun family protein [Janthinobacterium sp. Marseille]
          Length = 418

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 102/445 (22%), Positives = 168/445 (37%), Gaps = 56/445 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L  ++R        L   + D     L  R++ +V   V   LR      AV      
Sbjct: 13  EVLREILRFTGPADGTLSRYFRDHP--KLGSRERGVVAEAVYGLLRNK----AVYTSFAE 66

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S       +++++  + +A  + ++       +                           
Sbjct: 67  SG---NGPTMRRMTLLGLADAVGVESLGGLTEEETEWL-------------------NHV 104

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETW 189
            +    L      S +PEW  E+L    G+   L ++ A   P  +DL V       E  
Sbjct: 105 MQIDRTLLPSLLRSNMPEWLFEKLVARDGEAAALELAHAVNQPAPLDLRVNAIKATREDV 164

Query: 190 AHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +                  ++ +LP F  G   VQD  + +  Q+ G     
Sbjct: 165 IMALAEAPILCEPTPYAPLGIRIIKKPALQNLPLFKNGSIEVQDEGSQLLSQIVGAKRGE 224

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296
            V+D CA  GGKT      + +  ++ A D+S++RL KL+  L R  L          E 
Sbjct: 225 MVVDFCAGAGGKTLSLGAAMRNTGRLYAFDISEKRLAKLKPRLARSGLSNVHPVQIAHEN 284

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           DA         D VLVDAPCS  GT+RR+PDV W +    +V+    Q  +L      VK
Sbjct: 285 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDVKWRQTPQSLVELNEKQASILAGAARLVK 344

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CS+  +++E +V   L S      L+P++    +     + L  + +++++
Sbjct: 345 AGGRLVYATCSILDEENEAIVASFLASR-DDFVLIPMSEVLAE---QKIDLKMDDYLKLS 400

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P             DGFFA  L R 
Sbjct: 401 P--------ALHHTDGFFAAVLERK 417


>gi|139436886|ref|ZP_01771046.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC
           25986]
 gi|133776533|gb|EBA40353.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC
           25986]
          Length = 466

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 166/471 (35%), Gaps = 39/471 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L    R+ +    +L      ++ + + QRD      +        
Sbjct: 1   MSKLSPARKLALDVLMEADRRGMYARDVLS---SRASAKAIDQRDSAFAARLALGVAATQ 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D +LD  L     +    ++  LR+S  ++LYL       V   VE  +     +  
Sbjct: 58  GILDELLDQFLDKP-KKVAPRVRMALRISAFEMLYLHTPGRVAVSQGVELVRS--GAKSA 114

Query: 121 AKLVNSILRRVSREKIELL------------QRIAGISIIPEWFKERLENFYGKERVLAI 168
           A L N++L +V+    +               R++ +  +P W   R+   +        
Sbjct: 115 AGLANAVLHKVADNVEDFAAASDVDESERRLVRLSRLMGLPRWLCARIMASFDTPEGALS 174

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
               ++P  + L            ++ ++ P        +   +    G  E    V   
Sbjct: 175 FAGNLAPAPLALHENAFATKPDPYISQLIAPVFPGCHAPVDAQVTVASGVFERAAAVASD 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV------SGAKVTALDVSKRRLEKLRCN 282
             +            S L++ A  G KT  ++          + TALD+  R+ +     
Sbjct: 235 LNAQL-IATAATRPGSCLEIGAGRGTKTYVMMCQAKRAGYERQHTALDLHDRKCDLNLAR 293

Query: 283 LDRLHLYAEDIIEMDAF-----------DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           L +  +     +  DA                   FD V +DAPCS TGT+RRHP++ W 
Sbjct: 294 LHKAGIRGVRTVSGDACELDEVLTSFDAMLGETVKFDTVFIDAPCSGTGTMRRHPEIPWR 353

Query: 332 RDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPVE 389
              +D   +    Q  +L +  + V  GG ++++ CS+  ++S ++V   L S       
Sbjct: 354 LTENDVTAELPKLQLTMLKEAATRVAAGGELIYATCSVFDEESTQLVDAFLASPEGAGFS 413

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITP-DMLEKIDGVSSGMDGFFAVALR 439
           + PL+ A    +           +R     + + +   +   DG F   L 
Sbjct: 414 VAPLSKAQILQLPEFDQAKKLVSVRQNDRGLFQSVPVNADSYDGHFCARLV 464


>gi|158424806|ref|YP_001526098.1| tRNA/rRNA cytosine-C5-methylase [Azorhizobium caulinodans ORS 571]
 gi|158331695|dbj|BAF89180.1| tRNA/rRNA cytosine-C5-methylase [Azorhizobium caulinodans ORS 571]
          Length = 447

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 153/463 (33%), Gaps = 57/463 (12%)

Query: 6   NARLVS-SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            ARL +   L+  V         ++   +   A R +   D+  +       LR   R+ 
Sbjct: 15  AARLQAILDLMQEVDSVDRPADAVISAWFR--ARRDVGAEDRGPISETYYALLRAHARLG 72

Query: 65  AVLDFVLISSLPRKKYSLQQLL-----RVSVAQIL--YLDVADYAVVDLAVEQAKRDKEN 117
             L        PR +     +L     R  VA++    +        +      K     
Sbjct: 73  WWLARHGREDTPRNRLLAFLVLDGKKTRDEVARLFSGGMSAPAPLTDNERALLVKLQGG- 131

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                                          P W  E   N +G         A ++P  
Sbjct: 132 ----------------RMDSPSMPEEVRLECPAWALEPFRNRFG-AEFEREMAALLTPAP 174

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF------AEGVWWVQDA 228
           +DL V       E     L  + LP            +   P          G   +QD 
Sbjct: 175 LDLRVNPIKAKREDMVQALRELGLPAEPSVSAPFGIRVRERPSLSRLTMLKSGEVEIQDE 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
            + +   L        V+D CA  GGK    A  + +   V A DV + RL++      R
Sbjct: 235 GSQLVALLMDARPGERVVDFCAGAGGKTLAIAAQMANRGHVIACDVMEGRLKRGAERFRR 294

Query: 286 LHLYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
             L+  +      E D +    K  FD VLVDAPCS TGT RR+PD  W      +    
Sbjct: 295 AGLHNIETRLLASETDRWVKRHKGTFDRVLVDAPCSGTGTWRRNPDARWRTLGAGLETLL 354

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L      VKPGG +V++ CS+   ++E  V   L + P    ++PL     +  
Sbjct: 355 PQQARILASAARLVKPGGRLVYATCSMLPDENEGQVASFLAAHP-DFRVLPLTEVAPQLP 413

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
             A            PD L  +      MDGFFA  L+R   P
Sbjct: 414 PSA-----------HPDYL-SLTPARHDMDGFFAAVLQRAPLP 444


>gi|227488841|ref|ZP_03919157.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091263|gb|EEI26575.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 470

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/495 (21%), Positives = 178/495 (35%), Gaps = 94/495 (18%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           +          L  E  +     LS RD      I   T+R +  +D ++       +  
Sbjct: 1   MFNDGAYGNIALPREITE---AGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSRPMSE 57

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               +   LR+ + Q+LY  V D+A VD +V         +     VN+ILR V ++ +E
Sbjct: 58  LDPIVLNALRMGIYQLLYTRVEDHAAVDTSVRLV-----PQRVKGFVNAILRAVQKKPLE 112

Query: 138 LLQ----------RIAGISIIPEWFKERL------------------------------- 156
                        ++A  +  PEW                                    
Sbjct: 113 QWIEELAPEGKLAQLAFRTGHPEWIARSYLATLSAPSGAVPSANGVGTESSADGARADSS 172

Query: 157 -----------------ENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAV 196
                             +    + +    +A  +   + L  K      +  A      
Sbjct: 173 AARSDPSTDPSAEPSTGSSTILFDELAKALEADSTRPIVHLAAKPGEISADELALITGGE 232

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP----VQLFGTLNNLSVLDLCAAP 252
                   +     +   +    E + ++QD  + +     V++    +    LDLCA P
Sbjct: 233 EGAYSPYAVYLEGGNPADIEPVQEKLAFIQDEGSQLIGAALVRVDVDNDAGRWLDLCAGP 292

Query: 253 GGKTAQLI----VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308
           GGK   +     + GA VTA++++  R + +R   +   L    ++  D         FD
Sbjct: 293 GGKATMIGSLAAIDGATVTAVEIAPHRGDLIRKATE--GLP-VTVVVGDGRTVDVGSSFD 349

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VLVDAPCS  G++RR  +  WT+D  DI +    Q +LL  G+S  KPGG+VV+S CS 
Sbjct: 350 RVLVDAPCSGLGSLRRRQESRWTKDESDIEELTALQYELLEAGVSRCKPGGVVVYSTCSP 409

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
           D +++ E+V K L + P  VE +  +       ++      E  +++             
Sbjct: 410 DLRETREIVDKALVTLP--VEELDAHPLVAPMDNVGR----EKSVQMW--------TYRH 455

Query: 429 GMDGFFAVALRRLIQ 443
           G D  F   LR+  +
Sbjct: 456 GTDSMFFAVLRKKAE 470


>gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3]
 gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
          Length = 450

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 179/454 (39%), Gaps = 37/454 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            + +  L+ +  + +S    L+  +     +      + +  A V    ++  +ID +L+
Sbjct: 11  EIIADALTLIEERELSSKHALERVFRRVEGKDKETA-RGIAHAYVFEIEKWRAKIDFILN 69

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120
            VL  S +      L  LLR+   ++ +  V           VV    +  +    N   
Sbjct: 70  SVLKGSRVEDLDTYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTRAKFANAVL 129

Query: 121 AKLVNSILRR--VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            ++    + R     ++ + ++ ++     P W+ E +    G +  + +  + + P   
Sbjct: 130 REVEKFNVERALKRLKERDRIEWLSVRFSHPRWYVEYVVKLLGYDETVRLLLSNLRPQRY 189

Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + V     D++     L    +      + +        + +  L  + +G + +QD +
Sbjct: 190 YIRVNTLKVDVDRVKRYLEENGVRVSLTPVDDVLKVLEYEKPVTKLEWYRKGYFVIQDLA 249

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++    +        VLDL AAPG KT      + +  ++ A+D S  RL K+R  + +L
Sbjct: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRLIKMRERMKKL 309

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +    ++  D   Y  K+ FD +++DAPCSS+GT R+ P+V W  + + I +    QR 
Sbjct: 310 GVKNVKLVHADGQSYTEKEKFDKIILDAPCSSSGTYRQFPEVKWRFNEEKIKRVISVQRN 369

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L+     +  GG + +S CS+   ++E+ V   +      +ELV     +    D    
Sbjct: 370 MLINAYRNLAGGGEMTYSTCSIRIDENEQNVLFAIEK---GLELVDYPFEWG---DKGFL 423

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +   R      +           FF   LR+
Sbjct: 424 EIGDKVFRTWTHKHDCNS--------FFIAKLRK 449


>gi|325981403|ref|YP_004293805.1| Fmu (Sun) domain-containing protein [Nitrosomonas sp. AL212]
 gi|325530922|gb|ADZ25643.1| Fmu (Sun) domain protein [Nitrosomonas sp. AL212]
          Length = 423

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/454 (20%), Positives = 169/454 (37%), Gaps = 58/454 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            +   L  ++        +L   + D+    L  +D+  +   V   LR    +++++  
Sbjct: 10  AAIVALRTILPLEYPADAILRRFFQDNPM--LGAKDRAFIAETVFDILRHRFFLESLVKI 67

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           V            + L+   + ++  +++ + A +    E        +  +++      
Sbjct: 68  VTP----------RALILAYLVKLQGMNLRELASLVSEAE-------TKWLSEI------ 104

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
              +     +  +A  +  P W  E+L++F     +L +  +      +DL V       
Sbjct: 105 ---KAIKPDIFPLATQAEFPAWLVEKLQHFMSDTDILDLGLSLQKSARLDLRVNTLLAKR 161

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240
                 L    +             +   P       F  G   VQD  + +   L    
Sbjct: 162 NEVLEALKQEGIDAEATPYSPCGIRLAGKPAINRHILFLSGKIEVQDEGSQLLGYLLAPK 221

Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--- 294
               V+D CA  GGK      L+ S  ++ A DVS++RL  L+    R  L    I    
Sbjct: 222 RGEMVVDFCAGAGGKSLLLGALMNSKGRIYAFDVSEKRLNNLKPRFKRSGLSNLHIQRIT 281

Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L    S
Sbjct: 282 NENDIKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPHSIDELKTKQAAILAAAAS 341

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +KPGG +V++ CS   ++++ V+ + L + P    L        + I +        ++
Sbjct: 342 LLKPGGQLVYATCSFLPEENQTVINEFLAAHPQFNLLNCAGLLSQQKIPLDTGE----FL 397

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR--LIQPK 445
           ++ P             DGFFA AL R  L +P+
Sbjct: 398 QLFP--------KLHQTDGFFAAALTRNDLAKPE 423


>gi|94987318|ref|YP_595251.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731567|emb|CAJ54930.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 447

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 95/469 (20%), Positives = 174/469 (37%), Gaps = 63/469 (13%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR +++  L  + ++   +  LL+          LS++D  LV  +V   LR   
Sbjct: 13  KKTKTAREIATIALQKI-KEGQPIQVLLNNILLTYP---LSKQDIALVTELVYGYLRLEI 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           RI  +L+  L  S     Y ++ ++ ++  ++L+LD +  YA +  AV   K     +  
Sbjct: 69  RIVWILEQFLKKS-EHLPYEVKLIIGLATYELLFLDKIPPYATIHTAVSTIKSKFG-KIL 126

Query: 121 AKLVNSILRRVSREKIELL----------------QRIAGISIIPEWFKERLENFYGKER 164
           A + N+ L+ + R+                       ++    IP W  +   + YG ++
Sbjct: 127 AGVANASLQTIFRKSKHNDGPKYNTFYKQRLPEDIHYLSIWYSIPLWIIKLWISNYGTQK 186

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFA 219
            L ++ + +   Y  + V    + W      +    G          +       L  + 
Sbjct: 187 TLKLAASSLQRPYFCIRVNPIYDNWRELYENLCQNGGIPIGRSGIYFKPNRKPKELQYYL 246

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSV--LDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRL 276
           E  +     + S  V     +    +   D CA  GGKT+ L+  G  + A  D+S  +L
Sbjct: 247 EQGYISIQGAGSQIVMDALDIQTWKIPIWDACAGRGGKTSLLLEWGIPIFAASDISLSKL 306

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           + L     RL L    I    +     K         +L+D PCS  GT+ RHPD+   R
Sbjct: 307 QGLIAETKRLKLLTPSIFCSSSTQPALKNVLCSQLKTILLDVPCSGLGTLSRHPDIKKFR 366

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              D+ K    Q+K+L     F+ P G +++  C+++  ++E+ V + L+  P       
Sbjct: 367 TPKDVDKLIQLQKKILNTAWEFLPPQGELIYITCTVNPSENEQQVIQFLKDYPQA----- 421

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                W+ I                           G D  F   +++ 
Sbjct: 422 SLKKQWEGI-----------------------PDRFGTDIMFGAIIQKK 447


>gi|241765345|ref|ZP_04763321.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
 gi|241364944|gb|EER59882.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
          Length = 424

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 151/454 (33%), Gaps = 59/454 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+   +        ++   + D     L  R++  +   V   LR     D +   
Sbjct: 9   ACAELVRLTLTFEHPADAVVSRFFRDHR--GLGPRERATLAETVYTVLRKKLLFDHMA-- 64

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                        ++L  +            +      ++ A  D+E +   +     + 
Sbjct: 65  -----PSGSGPKERRLAILG-----------FHGPRDFLKSALTDQEKKWLDQCDAVTVD 108

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
            +                +PEW  + L++  G +    + ++      +DL V       
Sbjct: 109 DLMERH---------RHNLPEWLVKPLKDQLG-DGFWPLVESLAQSAPLDLRVNALKDKR 158

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTL 240
                +L    +             I        L  F  G   VQD  + +   L    
Sbjct: 159 ADVQKELAKAGIKAHPTPYSPWGLRIDDKPALTKLDAFTRGAIEVQDEGSQLLALLLDAK 218

Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
               V+D CA  GGK       + +  ++ A DVS  RL+ L+  L R  L         
Sbjct: 219 RGEMVVDFCAGAGGKTLAIGATMRNTGRLYAFDVSAHRLDALKPRLARSGLSNVHPAAIA 278

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L     
Sbjct: 279 HERDERIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAKAVEELVVKQAAILASAAR 338

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-- 411
            +KPGG +V++ CS+  Q++E + +      P    L          +D A  L   G  
Sbjct: 339 LLKPGGRLVYATCSILPQENEAIAEAFSADHPDFDVLDAGQVLEQLKVDAAHTLCSGGAS 398

Query: 412 ---WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              ++R+ P +           DGFFA    +  
Sbjct: 399 NTRYLRLWPHL--------HQTDGFFAAVWTKKA 424


>gi|305664185|ref|YP_003860473.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
           17230]
 gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
           17230]
          Length = 455

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/432 (21%), Positives = 182/432 (42%), Gaps = 57/432 (13%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAV 103
           D+IL  AI     + +  ID ++  +   S++      L+  LRV++  +L+        
Sbjct: 46  DRIL-TAIYYDIWKRIGIIDRIICELTGVSNVAVLDPWLRAALRVAIEILLFER-----F 99

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG------------------- 144
           +  +  +  ++   ++    +   L RV+   + +                         
Sbjct: 100 LKESRYRDAKNIFIKYLKGRIAGFLSRVTHPYVGMYFWEMVDKISTYRLEIKDLYGDLEV 159

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN---------A 195
             ++  +  +++    G +   +I     S   I + V     +    LN          
Sbjct: 160 RYMVSRFIIDKIIKLVGIDEAKSILREFNSRYPISIRVNILKCSVDEVLNVLRSEGINAE 219

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
           +      +   + P        + EG   +QD ++++   L        V+DLCAAPGGK
Sbjct: 220 IGKYVKTVIKFKGPYDFDRSSLYREGKIVIQDEASALASILLDPKPGEVVIDLCAAPGGK 279

Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDA 309
           T  +   + +   + A D+ K R+++++  L+R  +    I   DA        + + D 
Sbjct: 280 TEHMGELMNNTGIIYAFDIDKTRIKRMQEILNRCGISIVKIFNEDARKATEILGRNIADK 339

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VLVDAPC+S+GTI ++ ++ W    D++ K+A  Q +LL   I  VKPGG ++++ CSL 
Sbjct: 340 VLVDAPCTSSGTIMKNQELRWRITEDEVNKAAKLQYELLETAIELVKPGGKILYTTCSLF 399

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           ++++E+V++KVLR+    V++VP+N                G +R  P            
Sbjct: 400 REENEDVIEKVLRNHSN-VKIVPINGPLDPGFIA-------GTMRAWPH--------RHK 443

Query: 430 MDGFFAVALRRL 441
           + GFF   L+++
Sbjct: 444 LIGFFYALLQKI 455


>gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3]
 gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
 gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
          Length = 450

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 95/413 (23%), Positives = 169/413 (40%), Gaps = 38/413 (9%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           +  I    ++    ID V+  ++  +       L+  LRV+V   L+ D      +    
Sbjct: 53  LTMIFYDIMKKQGLIDKVIKEIVGVTPLILDPWLRAALRVAVDIALFHD-PSSQTIKNLR 111

Query: 109 EQAKRDKENRHFAKLVNSI------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162
            +A     +R    +          +          L+ +    + P W  ER++   G 
Sbjct: 112 WKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPKNELEELEWKYLAPSWLIERVKGILGD 171

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG----- 217
           E             +I + V          +  +      +   E   +I+ + G     
Sbjct: 172 ETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFD 231

Query: 218 ----FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270
               F EG   VQ+ ++++   +       +V+DL AAPGGKT  L   + +  K+ A D
Sbjct: 232 TSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFD 291

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPD 327
           V K R+++L+  + R+ +     +  DA        +++ D VL+DAPC+S+GTI ++P+
Sbjct: 292 VDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPE 351

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W    D I + +  QR+LL      VKPGG ++++ CS+ K+++E+ ++  L   P  
Sbjct: 352 LRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHP-E 410

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +LVPL S Y            EG +R  P              GFF   L +
Sbjct: 411 FKLVPLKSPYDPGF-------LEGTMRAWPH--------RHSTIGFFYALLEK 448


>gi|118594064|ref|ZP_01551411.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Methylophilales
           bacterium HTCC2181]
 gi|118439842|gb|EAV46469.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Methylophilales
           bacterium HTCC2181]
          Length = 421

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 166/456 (36%), Gaps = 63/456 (13%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL- 67
              + +L   + K +     L   + ++    L   D+  +  I    +R    ++ ++ 
Sbjct: 7   KACADILGESLIKNLPADVQLSYYFKNNR--NLGSSDRSDIAEIYYGVIRNKRLLEEIVG 64

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           D      +                 ++YL V     +                       
Sbjct: 65  DAHCKKMI-----------------LVYLLVLKGHSIKELS----------GVTDEYEIE 97

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
                ++    +        +P+W   +L  +YG+E  +A   + +SP  + L V     
Sbjct: 98  WLVEKKKNKVHIDSWPTKLSLPDWIWAKLVLYYGEEEAIAFGTSLLSPATLQLRVNSLKT 157

Query: 188 TWAHKLNAVMLPTGGIRLKELPE--------------SIVSLPGFAEGVWWVQDASASIP 233
                +      +    + ++ +              +I   P F  G   VQ+  + + 
Sbjct: 158 LSVQDVVNEFRLSFPDEVVKIKKTELSKQGITLPRGTAIQKHPLFLGGAIEVQEEGSQLL 217

Query: 234 VQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L        V D CA  GGKT   + L+ +  ++ A D+S RRL  ++  L R     
Sbjct: 218 TLLLDVKRGHMVADFCAGAGGKTLALSALMKNTGRIYAFDISDRRLANMKQRLKRSGASN 277

Query: 291 EDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
             +     E D      +   D VLVDAPC+  GT+RR+PD+ W +  + + + A  Q  
Sbjct: 278 IAMQRISNENDLKIKRLRNKLDRVLVDAPCTGFGTLRRNPDLKWRQTEESLAELAIKQAS 337

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L       K GG +V++ CS+   ++E ++   L ++    +++P +    KS    + 
Sbjct: 338 ILEAASKLCKKGGYLVYATCSILNDENENIIATFLENN-QHFKIIPQHIIMAKS---GVD 393

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +    ++++ P         +   DGFF   + R++
Sbjct: 394 IGEGDFLKLNPH--------THKTDGFFGALMERIV 421


>gi|319408157|emb|CBI81810.1| SUN-family protein [Bartonella schoenbuchensis R1]
          Length = 428

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 162/452 (35%), Gaps = 51/452 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +    +  L        F  +S  D+  +  IV   LR    +   +D
Sbjct: 8   QAAIDVLKEIEMRHRPASEALKDWGLSHRFAGVS--DRAAIGTIVYDVLRRRYSLQWRMD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                       +   LL                   + +EQ     E   F   + ++ 
Sbjct: 66  SD-----DILDIAFGALLDTGA---------------MTIEQIDSTLEGDRFTPQLLALK 105

Query: 129 RRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
           +R S +K +L+     I   IP+W +  L+  +    V     A  +   +DL V     
Sbjct: 106 QRHSWQKRQLVDAPDYIRGDIPQWCQAHLQPLFADNWVTEA-AALATRPPLDLRVNSLKA 164

Query: 188 TWAHKLNAVMLPTGGIRLKEL-------------PESIVSLPGFAEGVWWVQDASASIPV 234
           T    L  +                           ++ + P F +G + VQD  + I  
Sbjct: 165 TPEKVLKELAKIKVQSFSWFRQALRIAPIEKFGRHPNVQAEPAFQKGHFEVQDLGSQIVA 224

Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
            L  T   + +LD CA  GGKT   A  + +  ++ A D +K RL  +   L R  ++  
Sbjct: 225 HLTETKAGIQLLDYCAGAGGKTLALAANMNNRGQIYAYDSNKVRLAPIFSRLRRAGIHNV 284

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                           D VL+DAPCS TGT RR PD  W    + + +    Q  +L + 
Sbjct: 285 QSRVHVEELKPLVGQMDIVLLDAPCSGTGTWRRRPDAKWRLTPEQVKQRQEEQFAILNEA 344

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSP 409
           + ++K  G +V+  CSL   ++EE + + L+        +L  L   ++ S  +    S 
Sbjct: 345 LVYLKSNGRLVYITCSLFIDENEEQISRFLQRHSNFFPIDLRALWQRHFSSSTIQPMFSS 404

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            G           +   S+  DGFF   L++ 
Sbjct: 405 YG---------LTLSPASTQTDGFFLAILQKK 427


>gi|260888974|ref|ZP_05900237.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia
           hofstadii F0254]
 gi|260861034|gb|EEX75534.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia
           hofstadii F0254]
          Length = 433

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 96/456 (21%), Positives = 192/456 (42%), Gaps = 38/456 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N +L   +LL  + +        L+  +  + +   ++++++ +  ++NV ++ L
Sbjct: 1   MIKKKNIKLDIVNLLDEI-QNGKYSNIQLNYYFSKNNY---TKKEKMFITNVINVVIKNL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             ID ++   + +   RK   ++QLLR+SVAQ+ +++  +  V+  A E AK    N H 
Sbjct: 57  IYIDYLIGKSVRNVKKRK---IKQLLRISVAQLFFMESDNAGVIFEAGEIAK--ILNAHQ 111

Query: 121 AKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
           A  VN+ L+          E+I    R + +   P+WF  +++  Y  + +  +  +   
Sbjct: 112 AGFVNATLQTILKNKEKFDEEIPKDNRESIVLSYPQWFVNKMKIDYPDDYLEML-KSYKK 170

Query: 175 PLYIDLTVKFDI------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             Y+ +    +       E     +   +L + G        +I     +  G   +QDA
Sbjct: 171 RSYLSVRFDKNKITSEKFEELLKNIKTDILFSVGEVYYLSNANIFDTQIYKNGDVVIQDA 230

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           S+ + V+  G  +  +VLD C+APGGK      + +   + + D+ + +++ L    ++ 
Sbjct: 231 SSYLAVRNLGVKDGETVLDACSAPGGKSLAILQLFNPKNLISTDIHEHKVKLLNELKNKY 290

Query: 287 HLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                ++   D         +FD +L+D PCS  G +R+ P+ ++    +DI      Q+
Sbjct: 291 GYSNFEVKLNDATQIENLDTMFDKILLDMPCSGLGVLRKKPEKIYELTANDIKNLKKLQK 350

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+       +K GG +V+S C+  K ++   +Q  L        L           D+  
Sbjct: 351 KIFESAYKSLKNGGEIVYSTCTFSKNENTNNIQYFLEKYKDLEILE-----VEIPKDIEN 405

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                G + I           +  MDGF+   LR+ 
Sbjct: 406 IRDEFGGVYI--------SYKNKYMDGFYIAKLRKK 433


>gi|254247429|ref|ZP_04940750.1| hypothetical protein BCPG_02227 [Burkholderia cenocepacia PC184]
 gi|124872205|gb|EAY63921.1| hypothetical protein BCPG_02227 [Burkholderia cenocepacia PC184]
          Length = 421

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 94/445 (21%), Positives = 154/445 (34%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGT 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     S       
Sbjct: 72  PARRLT-------LLGLMQ------------------TMGRNALKPFLSDTESAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +   + +P+W  + L   +  E +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALSERFDAEELAQLAAALNYPAPLDLRANAQKASRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 EALRVSGIEAGATPFAPFGVRVVGKPALTRLKLFEEGAIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A D+S++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDISEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTAIDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P    LVP         D  + L    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-EFTLVPAQQVL---ADQRIELETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                        DGFFA  L R  
Sbjct: 403 H--------RHATDGFFAAVLERRA 419


>gi|296116324|ref|ZP_06834940.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295977143|gb|EFG83905.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 431

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/461 (19%), Positives = 165/461 (35%), Gaps = 49/461 (10%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M     ARL  +  L+S +          + +  + +  +  +   D+  + A V  TLR
Sbjct: 1   MTPS--ARLSAAIDLISAMEATPFRPADAVANSFFRERRY--IGGGDRRAISARVWDTLR 56

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD--VADYAVVDLAVEQAKRDKE 116
              R+   ++       PR        L +++  +   D    +          ++ D +
Sbjct: 57  HWRRLCWWIERADAPVTPRT-------LVLALEVLARQDRMTPEELFSGERYAPSRLDPQ 109

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            R     +        +         A    +P+W   R        +  A   A +   
Sbjct: 110 ERALCAFLRG------KSMDHPEMPRAVTLEVPDWLLPR-VEATFGAQADAELQAMMGEA 162

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQD 227
            +DL         E     L    + T    L          + + S   F  G+  +QD
Sbjct: 163 TLDLRANLLKTTREAARMALAQEGITTQDTTLSPWGLRVAGRQPVTSTAAFRAGLIEIQD 222

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +     G    + VLD CA   GK    A  + +   + A DVS+ RL+     L 
Sbjct: 223 EGSQLVAAAVGAEPGMRVLDYCAGAAGKTLAMAMTMNNRGHIVACDVSEPRLDGAVRRLR 282

Query: 285 RLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  +       D +       FD VLVDAPC+ TGT RR+PD        D+++  
Sbjct: 283 RAGVHNAERHLLATGDKWARRRAGSFDRVLVDAPCTGTGTWRRNPDARLRLRESDLLELM 342

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q  +L +  + ++PGG +V++ CS+  +++ + +   ++ +P    + P         
Sbjct: 343 EKQSDILDRAAALLRPGGRLVYATCSILNEENHDQIAAFVQRNPAFRLVTP--------- 393

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                + P G   +       +  + +G DGFF   + R+ 
Sbjct: 394 PQGEGIMPAG---LLVGGQMSLSPLRNGTDGFFTAVMERVA 431


>gi|254673053|emb|CBA07675.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 418

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 162/446 (36%), Gaps = 53/446 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L+ ++  +     +L   + +     L ++D+  +       LR   +    +   L
Sbjct: 10  AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                + + +    L +               +    +            +     L  +
Sbjct: 64  RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEEIEFLGNL 104

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
              K E    +   + +P+W  E+L+  + +E +LA   +      +D+ V       + 
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 164

Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L A                 +   ++     F +G   VQD  + +   L G    
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295
             ++D CA  GGK       + +  ++ A D++++RL  L+  + R  L          E
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D+         D VLVDAPCS  GT+RR+PD+ + +  + +      Q  +L      V
Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KP G ++++ CS+  +++E  V++ L       ELV           + + L    ++R+
Sbjct: 345 KPQGRLMYATCSVLPEENELQVERFLSEH-SEFELVNCAELL---QSLKVDLDTGKYLRL 400

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                   D      DGFFA  L+R 
Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418


>gi|119899412|ref|YP_934625.1| hypothetical protein azo3122 [Azoarcus sp. BH72]
 gi|119671825|emb|CAL95739.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 430

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 103/458 (22%), Positives = 171/458 (37%), Gaps = 58/458 (12%)

Query: 2   KSGMNARLV---SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
                +R +   ++  L  V+        +L   + D+    L  RD+  +   +   +R
Sbjct: 7   APDAPSRALLIQATQALGAVLAFDHPADAVLSRYFRDNR--DLGHRDRGFIAENIYGIVR 64

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            L  +  ++             S +QLL                   L     +      
Sbjct: 65  RLRWLRRLVGE---------NASPRQLLL--AWLARGEGWPMRQFEGLVSPTERDWVAGI 113

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             A L    L              A  + +P+W  ERL   + +  +LA++ +   P  +
Sbjct: 114 KAATLEEGSL--------------AERADLPDWLAERLLRTHDEAALLALAHSLNRPAPL 159

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           DL V     D +     L          R            ++   P F +G   VQD  
Sbjct: 160 DLRVNVAKADRDRVVAALREAGFGCEPGRWSPQAVRLAGKPALQKHPLFLDGSVEVQDEG 219

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   L        V+D CA  GGKT Q   ++ S  ++ A DVS++RL KL+  + R 
Sbjct: 220 SQLLGLLVQPKRGELVVDFCAGAGGKTLQLGAMMRSTGRLYAFDVSEKRLAKLKPRMARA 279

Query: 287 HLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            L          E DA         D VLVDAPCS  GT+RR+PD+ W +    + +   
Sbjct: 280 GLSNVHPVLIAHENDAKVKRLAGKADRVLVDAPCSGLGTLRRNPDLKWRQSAAAVDEMVA 339

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      VKPGG +V++ CSL  ++++E+V   + + P            ++ +D
Sbjct: 340 KQGAILAAAARLVKPGGRLVYATCSLLAEENDEIVDAFVAAHP-----------EFRPVD 388

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               L+ +G + +      ++       DGFFA  L R
Sbjct: 389 AEAVLARQG-VALATGARLRLSPAEHDTDGFFAAVLER 425


>gi|281355510|ref|ZP_06242004.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281318390|gb|EFB02410.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 450

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 157/447 (35%), Gaps = 37/447 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL- 67
           L +  +L  V         +L     ++       RD+  +   V   LR+   +   L 
Sbjct: 17  LAARTVLQAVFGSGKPADRVLSAWLRENRQCG--SRDRQFIGEAVYAMLRYWGLLRKFLP 74

Query: 68  -DFV--LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + +  +     R        L  +   + Y ++     +  A E      +    A+  
Sbjct: 75  AERLVEIERGEIRLARLELDALLFAALYLDYRNLPAADAI--ARELGFPWPKPDREARNQ 132

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                    +   +    A   ++P+W    L    G +R   ++D    P         
Sbjct: 133 LLARAGALGKIFGVDAVFADGDLLPQWIATHLPE--GLDRERFLADLAARPPMWLRMQTA 190

Query: 185 DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
           + +     L+A  L                  ++ +L  F  G++ VQD ++        
Sbjct: 191 ETDHLVADLSAAGLSVSRHGKIADAVAVTGRVNLFTLDAFRNGLFEVQDLASQCIGLAAA 250

Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
             +    LD CA  GGKT QL   +     V A D+   +L+ LR    R         E
Sbjct: 251 PKSGERWLDACAGAGGKTLQLAALMNRTGTVVATDIRSYKLDDLRTRARRAGFPNIRTRE 310

Query: 296 MDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            D   Y  K+   FD VLVDAPCS +G  RR+PD  WT   +++      Q ++L     
Sbjct: 311 WDGKPYQGKQAARFDGVLVDAPCSCSGVWRRNPDGRWTLKAEELTDITRVQFEVLTAAAP 370

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG+++++ CSL  +++  V+++ L + P        N    +           G +
Sbjct: 371 AVKPGGVLIYATCSLFPEENGGVLERFLAAHPEYTLEDFPNPLTGEPTG--------GTL 422

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++               D  F   +RR
Sbjct: 423 QVF--------SYDGDCDSMFVARMRR 441


>gi|332678642|gb|AEE87771.1| Ribosomal RNA small subunit methyltransferase B [Francisella cf.
           novicida Fx1]
          Length = 426

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 193/448 (43%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYQFFRHYFSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +   QI  +    YA ++  V  A +D +     KLV
Sbjct: 57  KIIALYLTQQTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKDLKIIWAKKLV 112

Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R   ++  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREITRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QTKDTKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQVIKNLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAKIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|107023447|ref|YP_621774.1| Fmu (Sun) [Burkholderia cenocepacia AU 1054]
 gi|116690529|ref|YP_836152.1| Fmu (Sun) domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|170733870|ref|YP_001765817.1| Fmu (Sun) domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|105893636|gb|ABF76801.1| Fmu (Sun) [Burkholderia cenocepacia AU 1054]
 gi|116648618|gb|ABK09259.1| Fmu (Sun) domain protein [Burkholderia cenocepacia HI2424]
 gi|169817112|gb|ACA91695.1| Fmu (Sun) domain protein [Burkholderia cenocepacia MC0-3]
          Length = 421

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 94/445 (21%), Positives = 154/445 (34%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL+ V++            +       L   ++ ++   V   LR       + +    +
Sbjct: 14  LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGT 71

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              R          + + Q                         + F     S       
Sbjct: 72  PARRLT-------LLGLMQ------------------TMGRNALKPFLSDTESAWLEHVS 106

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
           +       +   + +P+W  + L   +  E +  ++ A   P  +DL         +   
Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALSERFDAEELAQLAAALNYPAPLDLRANAQKATRDQVI 166

Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +  G          +        L  F EG   VQD  + +   L        
Sbjct: 167 EALRVSGIEAGATPFAPFGVRVVGKPALTRLKLFEEGAIEVQDEGSQLLCSLVAPRRGEM 226

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297
           V+D CA  GGKT     ++ S  ++ A D+S++RL KL+  L R  L   + +    E D
Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDISEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A         D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L      VK 
Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTAIDELTPKQASILASAARLVKK 346

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++E +V++ L   P    LVP         D  + L    ++ + P
Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-EFTLVPAQQVL---ADQRIELETGDYLSLWP 402

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                        DGFFA  L R  
Sbjct: 403 H--------RHATDGFFAAVLERRA 419


>gi|319940730|ref|ZP_08015072.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805881|gb|EFW02648.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis
           3_1_45B]
          Length = 456

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 191/452 (42%), Gaps = 41/452 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ +   ++ +  SL+  L+          LS + +  +++IV   +R     +A   
Sbjct: 27  EFAADVRRRML-EGASLSSALETVSI-----GLSAQARAALQSIVYDVIRRRAFSNAA-- 78

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                        +  LL +++A ++    +D+ +V+  V  A+ ++    FA L+N++L
Sbjct: 79  -AAGLLSSPPPPPVMGLLEIAIALVVEGRYSDFTLVNETVNAARNNRRTVRFAGLINAVL 137

Query: 129 RRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI------ 178
           RR  RE+ ++     + +      P W+  R++  +       +    +           
Sbjct: 138 RRFLREREQISAVLQKDLDVRFNAPLWWIRRIKESHPSNWEEILRIGTLHAPMTLRVNAR 197

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +T    +E    +    +       + E P  +  +PGF EG+  VQDA   +  ++  
Sbjct: 198 RITPAAYLEELKARGIPALRVGRSAVMLESPLPVKDIPGFTEGIVSVQDAGTQLAAEILA 257

Query: 239 TLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED--IIE 295
              N  +LD CAAPGGKTA L   +   VTAL++  +R E ++  L RL + A       
Sbjct: 258 PKKNEQILDACAAPGGKTAHLLESADCHVTALEIDPKRAELIKSTLLRLGVEATVRAADA 317

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               ++   + FDA+L+DAPC+++G +RR PDV W+R  +D  + A  Q +LL      V
Sbjct: 318 AMVSEWHSGREFDAILLDAPCTASGIVRRQPDVPWSRRPEDPARLAREQARLLNALWPLV 377

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +++  CS+  ++  + +++   +                    A   +P G + +
Sbjct: 378 KKGGRLLYCTCSIFPEEGPDQIRRFTANHGDAQL-------------TAFKGAPTGMMSL 424

Query: 416 TPDMLEKIDGVSSG------MDGFFAVALRRL 441
            P         +         DGFF   L +L
Sbjct: 425 VPADHVHELPFNPNAAEPLVHDGFFYALLTKL 456


>gi|57641870|ref|YP_184348.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
 gi|57160194|dbj|BAD86124.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           kodakarensis KOD1]
          Length = 450

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 92/409 (22%), Positives = 171/409 (41%), Gaps = 34/409 (8%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           +  I     R L  ID V++ ++  S       L+  LRV+V ++          +    
Sbjct: 48  LTGIFYSIQRRLGLIDEVIEELVGVSPLILDPWLRAALRVAV-EVGVFREPSERTLQHLK 106

Query: 109 EQA-----KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
             A     +      ++   +   +     +     +R+    + PEWF  R+    G+E
Sbjct: 107 GVAQFLSKRTHPYVGYYYYDLLPRVVNYVPKLDTEEKRLKWEYLFPEWFIARMRALLGEE 166

Query: 164 RVLAISDACISPLY-IDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVS--LPG-- 217
               +     +    I +  ++  +E   + L    +             I+    P   
Sbjct: 167 AEELLRALNETLPTSIRVNRLRTSVEEVENYLRKKGVRFERSERVNTVIRILDPFNPEWL 226

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274
           F +G    Q+ ++++   +       +V+DL AAPGGKTA +   + +  K+ A DV   
Sbjct: 227 FNKGYAIAQEEASAVASLVLAPKPGETVVDLAAAPGGKTAHMAELMENRGKIYAFDVDSA 286

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           R+++++  L R  +   ++I+ D  +      +++ D VL+DAPC+S GTI ++P++ W 
Sbjct: 287 RIKRMKEVLKRTGVEIAEVIKADGRNAPELLGEEIADRVLLDAPCTSDGTIAKNPELRWR 346

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
               +I K    Q++L+      +KPGG +++S CS+  +++EEVV+  L   P   ELV
Sbjct: 347 LREKNIPKVVALQKELMESAWKLLKPGGRLLYSTCSMLPEENEEVVKWFLERHPG-AELV 405

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           PLN  Y            +G +R  P              GFF   + +
Sbjct: 406 PLNGPYDPGF-------LKGTMRAWPH--------RHRTIGFFYALIEK 439


>gi|33592823|ref|NP_880467.1| hypothetical protein BP1756 [Bordetella pertussis Tohama I]
 gi|33572471|emb|CAE42042.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382236|gb|AEE67083.1| hypothetical protein BPTD_1733 [Bordetella pertussis CS]
          Length = 433

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 98/450 (21%), Positives = 165/450 (36%), Gaps = 61/450 (13%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V++       +L       A+  +  RD+  +   V   LR L R          S
Sbjct: 1   MLGEVLQWTYPADAVLSHWLR--AYPGMGGRDRAELAQAVYDVLRHLRRY----RQFAES 54

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            +     + ++L  + +A  +  DV    +                      +   +  R
Sbjct: 55  GV---GPATRRLAILGLAATMNPDVLAEGL------------------GADQAAWLQRIR 93

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW---- 189
                    A  + +P+W  ERL      E    + DA   P  +D+ V           
Sbjct: 94  HIDVATLPRAVRASVPDWLDERLAQLDDSEA---LLDALNRPANLDIRVNPLKAERDPML 150

Query: 190 -------AHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                  A + +   +P     ++      +   P F +G   VQD  + +   L G   
Sbjct: 151 TVLRAGPAGRFDPQPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRR 210

Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294
              ++D CA  GGKT     L+ S  ++ A DVS  RL + +    R  L     +    
Sbjct: 211 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDS 270

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D            VLVDAPCS  GT+RR+PD+ W +    I +    Q ++L      
Sbjct: 271 ENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKSAARC 330

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V PGG +V++ CSL  +++ E  ++ L   P    L        +  ++ ++     +++
Sbjct: 331 VAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDAAQLLANRCANLTLSGP---YVQ 387

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           + PD+         G DGFFA    R  +P
Sbjct: 388 LRPDV--------HGTDGFFAAVFERR-KP 408


>gi|325291723|ref|YP_004277587.1| Sun protein [Agrobacterium sp. H13-3]
 gi|325059576|gb|ADY63267.1| Sun protein [Agrobacterium sp. H13-3]
          Length = 429

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 158/452 (34%), Gaps = 45/452 (9%)

Query: 8   RLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           RL  +  +L+ +  +R  +   L        F      D+  +  IV   LR       +
Sbjct: 6   RLAGAIEVLADIEGRRRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMKLSHAWL 63

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D    +SL         LLR                     E A     ++      + 
Sbjct: 64  MDDDSAASLGYA-----VLLR--------------QWGKSFSELAAEFDGDKFAPAAPDE 104

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
             ++    +            IPEW +   E  +G E  LA + A      +DL      
Sbjct: 105 EKQKAFLSRSLADAPAHIQGDIPEWVQASFETAFG-EGWLAEAQALNQRPTLDLRANTLK 163

Query: 187 ET------WAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIP 233
            T         +  A         ++           ++ +   F +G + VQD  + I 
Sbjct: 164 ATRDKVLKALEESGAEATHIARQGVRIPAGEGPSRLPNVTAELSFQKGWFEVQDEGSQIV 223

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L G      +LD CA  GGKT  +   + +  +V A D  ++RL  +   L R     
Sbjct: 224 ADLAGAHEGEQILDYCAGGGGKTLAMAASMNNKGQVHAFDADRKRLAPIIERLKRAGTRN 283

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             + +  A      + FD VLVDAPC+ TGT RR PD  W   T ++ +    Q + L Q
Sbjct: 284 VQVHDRAAGLVPFHEKFDRVLVDAPCTGTGTWRRRPDTKWRLTTRNLEERVQQQGEALSQ 343

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
              FV+PGG +++  CS+  +++E+ V +    +P       L+         A      
Sbjct: 344 AKGFVRPGGELLYVTCSVLPEENEQQVTRFCEENPQFYIGSALDRWQTTFGGNANKPHSS 403

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                       +   ++  DGFF   ++R  
Sbjct: 404 D------GKTVTLTPATTDTDGFFFCVMKRKA 429


>gi|145590255|ref|YP_001156852.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048661|gb|ABP35288.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 438

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 106/459 (23%), Positives = 183/459 (39%), Gaps = 69/459 (15%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++  +S VM    SLT +LD          L   ++ +V+++    LR   R   ++  
Sbjct: 18  IAAQAISEVM-SGRSLTEVLDE---------LDAHERPIVQSLTFDALRKWVRSHELIKQ 67

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVAD-----YAVVDLAVEQAKRDKENRHFAKLV 124
            +  + P     +  LL V++A  +  D  D     + VVD AV       +  +   LV
Sbjct: 68  FVPKTPP---PEVDHLLSVAIALFIRNDADDKGYAVHTVVDQAVRACGEYDQTLYAKGLV 124

Query: 125 NSILRR-----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI- 178
           N++LR+                      +P W++  L+  Y K+    +         I 
Sbjct: 125 NAVLRKVSLALQPVADKPFYPPDPIAMFVPPWWRASLKRNYSKDWQAILFAQAKRAPLIL 184

Query: 179 -DLTVKFDIETWAHKLNAVMLPTGGIR-----------LKELPESIVSLPGFAEGVWWVQ 226
                ++  + +   L    + +  I            L      +  LPGF  G   VQ
Sbjct: 185 RVNQKQYSRDEYRALLTESGIQSKPINAIAGISLPSALLLPDAVPVSDLPGFYSGAVSVQ 244

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDR 285
           DA A +   L     +  +LD CAAPGGKTA L+  +  ++ AL++  +RL K+  NLDR
Sbjct: 245 DAGAQLAATLLNPQADELILDACAAPGGKTAHLLELADCQMRALELDGKRLGKIGGNLDR 304

Query: 286 LHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L L++E             +     FD +L+DAPCS++G + RHPD+ + R   DI    
Sbjct: 305 LRLHSEKAKVLRGDASKSAWWDGVPFDKILIDAPCSASGIVARHPDIPFLRRESDIPVLQ 364

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR++L Q    +K GGI+++  CS+  ++ E+      +     + L           
Sbjct: 365 QRQREILTQAWKMLKSGGILLYVTCSVFPEEGEDQAVWFAQEHSNALRLDAPG------- 417

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       ++ P         +   DGF+    ++
Sbjct: 418 ------------QLLP---------TDANDGFYYALFKK 435


>gi|221068794|ref|ZP_03544899.1| Fmu (Sun) domain protein [Comamonas testosteroni KF-1]
 gi|220713817|gb|EED69185.1| Fmu (Sun) domain protein [Comamonas testosteroni KF-1]
          Length = 443

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 95/465 (20%), Positives = 162/465 (34%), Gaps = 68/465 (14%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L+   +        ++   + ++ +  L  R++  +   V   LR     +A+      
Sbjct: 12  ELVKRALTFEHPADAVVSRFFRENRY--LGPRERATLAETVYTVLRKKLLFEAL--AHSG 67

Query: 73  SSLPRKKYSLQ---QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           S    ++ ++     +LR                     EQAK++ + ++     +    
Sbjct: 68  SGARERRLAILGFAAVLR---------------------EQAKKEGKVKNKDGQDSETFI 106

Query: 130 RVSREKIELLQ------------RIAGISIIPEWFKERLENFYGKE-RVLAISDACISPL 176
           + +    EL                A    +PEW  E L+   G E   LA S    + L
Sbjct: 107 KAALTPQELKWLAACDGVKPEELMEAHRHNLPEWLVEPLKAQLGDEFWTLAASMEQAAAL 166

Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + +    D       +L    +                  ++  L  F  G   VQD  
Sbjct: 167 DLRVNTLNDKRSDLRKELEKAGIKAEPTPFSPIGLRVDGKPALAKLDAFNRGAIEVQDEG 226

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   +        V+D CA  GGKT  +   + +  ++ A DVS  RL+ L+  L R 
Sbjct: 227 SQLLALMLDAKRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARS 286

Query: 287 HLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            L          E D          D VLVDAPCS  GT+RR+PD+ W +    + +   
Sbjct: 287 GLSNVHPAAIAHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSVKAVQELTQ 346

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      VK GG ++++ CS+  Q++E + +    + P  V L          I 
Sbjct: 347 KQAAILESSARLVKAGGRLIYATCSILPQENEAIAEAFSAAHPEFVPLDAGEVLEQLKIA 406

Query: 403 MAMALSPEG-----WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               L   G     ++R+ P             DGFFA    +  
Sbjct: 407 DGDKLCSGGDEGRRYLRLWPH--------QHETDGFFAAVWVKKA 443


>gi|260220648|emb|CBA28398.1| hypothetical protein Csp_A07070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 423

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 154/454 (33%), Gaps = 59/454 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
              + L+   ++       ++   + D+    L  R++  +   V   LR     D +  
Sbjct: 8   EACTELVRLTLKFDHPADAIVSRFFRDNR--GLGPRERATLAETVYTVLRKKLLFDHLA- 64

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                         ++L  +                   +  A  D+E R          
Sbjct: 65  ------PSGSGPKERRLAILGFY-----------GPGDFLRSALTDQEKRWL-------- 99

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
                              +PEW  + L++  G +    + +       +DL V      
Sbjct: 100 -DQCEAVKPDDLMERHRHNLPEWLVQPLKDQLG-DGFWPLVENLNLGAGLDLRVNALKAK 157

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGT 239
                 +L    +         L   I   P       F  G + VQD  + +   L   
Sbjct: 158 RADVQKELQQAGIKAVPTPFSPLGLRIAGKPALNKNEAFLRGDFEVQDEGSQLLAMLVDA 217

Query: 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292
                V+D CA  GGKT      + S  ++ A D S  RL+ L+  + R  L        
Sbjct: 218 KRGEMVVDFCAGAGGKTLALGAAMRSTGRLYAFDTSAHRLDALKPRMARSGLSNVHPAAI 277

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             E D          D VLVDAPC+  GT+RR+PD+ W +    + + A  Q  +L    
Sbjct: 278 AHERDDRVKRLSGKLDRVLVDAPCTGLGTLRRNPDLKWRQTMAGVEEMAVKQAAILQSAA 337

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG- 411
             VK GG +V++ CS+  Q++E +      ++P  V L   +      ++ A +L   G 
Sbjct: 338 RMVKSGGRLVYATCSVLPQENEAIADAFSAANPEFVHLPAGDVLSNLKVENAPSLCSGGD 397

Query: 412 ----WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               ++R+ P +           DGFFA   ++ 
Sbjct: 398 DGQLYLRLWPHL--------HQTDGFFAAVWQKK 423


>gi|91790269|ref|YP_551221.1| sun protein [Polaromonas sp. JS666]
 gi|91699494|gb|ABE46323.1| sun protein [Polaromonas sp. JS666]
          Length = 445

 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 126/455 (27%), Positives = 195/455 (42%), Gaps = 54/455 (11%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ LL  V R   S+T  L+          +    +  V+++   TLR+L R +A+   +
Sbjct: 17  AASLLMAV-RDGQSMTAALE---------DVDAALRPGVQSLGFHTLRWLGRAEALRQQL 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVAD--YAVVDLAVEQAKRDKENRHFAKLVNSI 127
                P        LL V++A I    D     + +VD AVE AKR    +H A  +N  
Sbjct: 67  AKRPPP---PEADALLCVALALIWTEHDAPYTAHTLVDQAVEAAKRGDATQHQASFINGC 123

Query: 128 LRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+        +    +   P+W+ +R+   +  +   AI  A  S   + L V 
Sbjct: 124 LRRFLRERDDLVARSEKSPQAVWNHPQWWIDRVRKDHPGQW-QAILQANNSRAPLILRVN 182

Query: 184 FDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
               T A  L        A         +    + + SLPGFAEG + VQDA+A +   L
Sbjct: 183 ERKTTQAQYLLALSAVNIAATPVGKQGVILASAQPVPSLPGFAEGHFSVQDAAAQLAAPL 242

Query: 237 FG--------TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287
                           +LD CAAPGGKTA L+  +  +VTALD+  RR  ++  NL RL 
Sbjct: 243 LLEGLNTGDGQGARPRILDACAAPGGKTAHLLELADCEVTALDIDARRCTRIAQNLGRLG 302

Query: 288 LYAED--IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L A           D+   + +D +L+DAPC+++G +RRHPDV W R   DI + A  Q 
Sbjct: 303 LQAHIEVADAGRPQDWWDGQPYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAGIQA 362

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            LL      +KPGG +++  CS+ + + +  +Q  +      + L+P             
Sbjct: 363 HLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAHHTDAL-LMPSPGHLLPQSGAEA 421

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + P+  +R                DGF+   L +
Sbjct: 422 TVFPDNLMR--------------EHDGFYYAILEK 442


>gi|317154835|ref|YP_004122883.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2]
 gi|316945086|gb|ADU64137.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2]
          Length = 425

 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 91/403 (22%), Positives = 144/403 (35%), Gaps = 26/403 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR ++   LS  +     +   LD             RD  L   I    LR   
Sbjct: 7   KPLPPARRIALEALSHCLFSGHDIQATLDTALSAKPT---DPRDTGLATEIAYGYLRHKG 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           R++ VL   L     +    ++  + V+  ++++LD V  YA VD AVE +K     R  
Sbjct: 64  RVEYVLSRFLQDP-GKLPPKMRLAMGVAAYEMIFLDKVPAYASVDWAVEFSKTKPGTR-L 121

Query: 121 AKLVNSILRRVSREKIELLQRIAGI------------SIIPEWFKERLENFYGKERVLAI 168
           + L N++LRRV+                            P+W  +   + YG+   LA 
Sbjct: 122 SGLFNAVLRRVAELGETAHDPDFYRKDASGPEFLTRWYSCPQWLADMWRHAYGEADTLAY 181

Query: 169 SDACISPLYI--DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
             A ++P  +  +L    + +     L A+        +        S           Q
Sbjct: 182 LKAQLNPPALGINLFGHPEADELYADLAALPEVLDIEGMSFALPPGTSFEDEPRPPLARQ 241

Query: 227 DASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
             +A   ++            D CA  GGKT  L        A D+ + RL  L      
Sbjct: 242 SFAARQVIERLSPAAWPEPVWDACAGRGGKTRILREKNIDTFASDIHRGRLAALSRE--- 298

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
             L      E DA    P +    VL+D PCS  G + R PD  W R   D+      Q 
Sbjct: 299 --LPEVTTFEADAATATPPRQPGTVLLDLPCSGLGVLSRRPDTKWKRTARDLDDLVRLQT 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           ++L       +PGG +    C+L+  +++ +V+  L + P   
Sbjct: 357 EILDNAAIQARPGGTLAVVTCTLNPDENQGLVRTFLAAHPGAA 399


>gi|299532567|ref|ZP_07045957.1| Fmu (Sun) [Comamonas testosteroni S44]
 gi|298719514|gb|EFI60481.1| Fmu (Sun) [Comamonas testosteroni S44]
          Length = 443

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 92/465 (19%), Positives = 161/465 (34%), Gaps = 68/465 (14%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L+   +        ++   + ++ +  L  R++  +   V   LR     +A+      
Sbjct: 12  ELVKRALTFEHPADAVVSRFFRENRY--LGPRERATLAETVYTVLRKKLLFEAL--AHSG 67

Query: 73  SSLPRKKYSLQ---QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           S    ++ ++     +LR                     EQAK++ + ++     +    
Sbjct: 68  SGARERRLAILGFAAVLR---------------------EQAKKEGKVKNKDGQDSETFI 106

Query: 130 RVSREKIELLQ------------RIAGISIIPEWFKERLENF-YGKERVLAISDACISPL 176
           + +    EL                A    +PEW  E L+         LA S    +PL
Sbjct: 107 KAALTPQELKWLAACDGVKPEELMEAHRHNLPEWLVEPLKAQLGDGFWALAASMEQAAPL 166

Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
            + +    D       +L    +                  ++  +  F  G   VQD  
Sbjct: 167 DLRVNTLNDKRSDLRKELEKAGIKAEPTPFSPIGLRVDGKPALAKIDAFNRGAIEVQDEG 226

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   +        V+D CA  GGKT  +   + +  ++ A DVS  RL+ L+  L R 
Sbjct: 227 SQLLALMLDAKRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARS 286

Query: 287 HLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            L          E D          D VLVDAPCS  GT+RR+PD+ W +    + +   
Sbjct: 287 GLSNVHPAAIAHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSVKAVQELTQ 346

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L      VK GG ++++ CS+  +++E + +    + P  V L          I 
Sbjct: 347 KQAAILESSARLVKAGGRLIYATCSILPEENEAIAEAFSAAHPEFVPLDAGEVLEQLKIA 406

Query: 403 MAMALSPEG-----WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               L   G     ++R+ P             DGFFA    +  
Sbjct: 407 DGDKLCSGGDEGRRYLRLWPH--------QHETDGFFAAVWVKKA 443


>gi|240102589|ref|YP_002958898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
 gi|239910143|gb|ACS33034.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
          Length = 443

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 36/410 (8%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           +  I     R L  ID V++ ++  S       L+  LRV+V ++      +   +    
Sbjct: 48  LTGIFYSIQRRLGLIDEVIEELVGVSPLILDPWLRATLRVAV-EVAVFRDPNERTLQHLK 106

Query: 109 EQAKRDKE-NRHFAKLVNSILR----RVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
             AK        +       L         +     +R+    + PEWF ER+    G E
Sbjct: 107 GLAKFLSGRTHPYVGYYYYELLPRVINYVPKLNSEEKRLKWKYLFPEWFIERMHKLLGGE 166

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-LPGF---- 218
               +  A    L + L V     +     + +          E  E+++  L  F    
Sbjct: 167 -AEELLKALNETLPVSLRVNCLKASVEDVEDYLKRRNLRFERSERVETVIRVLDPFNPGR 225

Query: 219 --AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
              +G+   Q+ ++++   +       +V+DL AAPGGKTA +   + +  K+ A DV  
Sbjct: 226 LMEKGLALPQEEASAVASLILSPEPGETVVDLAAAPGGKTAHMAELMKNEGKIYAFDVDS 285

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLW 330
            R+++++  L    +   ++ ++D         +K+ D VL+DAPC+S GTI ++P++ W
Sbjct: 286 ERIKRMKQILRWAGVEIAEVKKLDGRKAPEFLGEKIADRVLLDAPCTSDGTIAKNPELRW 345

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                +I K    Q++L+      +KPGG +++S CS+  +++EEVV+  L        L
Sbjct: 346 RLREKNIPKVVQLQKELIESAWKLLKPGGRLLYSTCSMLSEENEEVVRWFLERH-DDARL 404

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           VPLN  Y +           G +R  P              GFF   + +
Sbjct: 405 VPLNGPYDEGFLP-------GTMRAWPH--------RHRTIGFFYALIEK 439


>gi|121602202|ref|YP_988662.1| NOL1/NOP2/sun family protein [Bartonella bacilliformis KC583]
 gi|120614379|gb|ABM44980.1| NOL1/NOP2/sun family protein [Bartonella bacilliformis KC583]
          Length = 428

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 146/438 (33%), Gaps = 25/438 (5%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +       L        F   S  D+  +  IV   LR    +   +D
Sbjct: 8   QAAIEVLHEIEVRHRPAGDALRDWGLSHRFAGAS--DRAAIGTIVYDALRRRYSLQWRMD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                    +  +   LL         + +     V      A +    +         L
Sbjct: 66  SD-----DIRDLAFGTLLDFG-----GMTIEQVDSVLAGDRFAPQLLGLKQRQSWQTRQL 115

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185
                     + +     + P +    +          ++    ++  +     L     
Sbjct: 116 EDAPDYIRSNVPQWCQTHLYPVFSDNWVVEAAALATRPSLDLRVNSLKATPKRVLKELAK 175

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            +  +       L            ++   P F  G + +QD  + I   L     ++ +
Sbjct: 176 TQVHSFSWFQQALRIAPTEQFNRHPNVQVEPSFQRGHFEIQDLGSQIVTHLVEAKASMQL 235

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD CA  GGKT   +  + +  ++ A D  K RL  +   L R  +    I         
Sbjct: 236 LDYCAGAGGKTLALSSHMGNRGQIYAYDSDKIRLSPIFDRLRRAGVRNVQIRGNIEELKP 295

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
              + D VL+DAPCS TGT RR PD  W      + K    Q  +L QG++++KPGG +V
Sbjct: 296 LIGMMDIVLLDAPCSGTGTWRRRPDFKWRLTLKQVQKRQAEQCAILNQGLNYLKPGGRLV 355

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CSL   ++EE + + L+         P+N         + +        I  D    
Sbjct: 356 YITCSLFFDENEEQISRFLKQHSNF---HPINMRELWQRHFSFST----MQPIFSDYGLT 408

Query: 423 IDGVSSGMDGFFAVALRR 440
           +   ++  DGFF   L++
Sbjct: 409 LSPATTKTDGFFLSILQK 426


>gi|15887638|ref|NP_353319.1| Sun protein [Agrobacterium tumefaciens str. C58]
 gi|15155185|gb|AAK86104.1| Sun protein [Agrobacterium tumefaciens str. C58]
          Length = 429

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 96/452 (21%), Positives = 160/452 (35%), Gaps = 45/452 (9%)

Query: 8   RLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           RL  +  +L+ +  +R  +   L        F      D+  +  IV   LR       +
Sbjct: 6   RLAGAIEVLADIEGRRRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMKLSHAWL 63

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D    +SL         LLR                     E       ++      ++
Sbjct: 64  MDDDSAASLAYA-----VLLR--------------QWGKSFAELTAEFDGDKFAPAAPDA 104

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
             ++    +            +PEW +  LE  +G ER LA + A      +DL      
Sbjct: 105 ERQQAFLSRSLSDAPAYIQGDVPEWVQSSLETAFG-ERWLAEAQALNERPTLDLRANTLK 163

Query: 187 ET------WAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIP 233
            T         +  A         L+           ++ +   F +G + VQD  + I 
Sbjct: 164 ATRDKVLKALEESGAEATRIARQGLRIPAGEGPSRLPNVTAELSFQKGWFEVQDEGSQIV 223

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L G      VLD CA  GGKT  +   + +  +V A D  ++RL  +   L R     
Sbjct: 224 ADLAGAREGEQVLDYCAGGGGKTLAMAASMNNKGQVHAFDADRKRLAPIIERLKRAGTRN 283

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             + +  A     ++ FD VLVDAPC+ TGT RR PD  W     ++ +    Q + L Q
Sbjct: 284 VQVHDRAAGLAPFQEKFDRVLVDAPCTGTGTWRRRPDTKWRLTARNLEERVQQQGEALSQ 343

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
              FV+PGG +++  CS+  +++E+ V++    +P       L          A      
Sbjct: 344 AKGFVRPGGELLYVTCSVLPEENEQQVRRFCEENPEFAIGSALERWQSIFSGNANKPHSS 403

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                       +   ++  DGFF   ++R  
Sbjct: 404 D------GKTVTLTPATTDTDGFFFCLMKRKA 429


>gi|303245831|ref|ZP_07332113.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492614|gb|EFL52482.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
          Length = 451

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 94/442 (21%), Positives = 159/442 (35%), Gaps = 42/442 (9%)

Query: 1   MKSGMN-----ARLVSSHLLSCVMRK-------RISLTCLLDLEYGDSAFRLLSQRDQIL 48
           M    N     AR ++  +L+ V+ +                L+    A   L  RD+ L
Sbjct: 1   MSPTGNSAPPPARKLALAVLAKVLPQPSRRKGPGTGQDVQAALDAALLAAPGLDPRDRGL 60

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLA 107
              +V   LR   R+  +    L          ++++L ++  +IL+   V  YA VD A
Sbjct: 61  ATELVYGYLRLRGRMAFLCARFLKRP-DAVPAPVRRILELAAYEILFCSKVPAYASVDWA 119

Query: 108 VEQAKRDKENRHFAKLVNSILRR-------------VSREKIELLQRIAGISIIPEWFKE 154
           V  A R K  +  + + N++LRR               R++    + ++     PEW   
Sbjct: 120 VS-AVRAKAGKGLSGMANAVLRRIAADPAAFEDPDFYCRDRCNEAEYLSRFYSCPEWIVA 178

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI-- 212
                +G E   A   A + P  + L V    +      +A+    G +       +   
Sbjct: 179 MWLRDFGPEETRAYLTAQLEPAPLGLRVNRSRDGARALFDALAAAPGVLAADFPTLAFPA 238

Query: 213 -VSLPGF----------AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
              LPG              +     A+  I   L        + D CA  GGKT  L  
Sbjct: 239 GTDLPGAAGLDLMAALADGRLSRQSAAAQRILYDLRLDDWPEPIFDACAGRGGKTLLLAE 298

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTG 320
           +G KV A D+   RL  L     RL +    ++   A            +L+DAPCS  G
Sbjct: 299 AGKKVIAGDMHAGRLSGLGREAARLGVSPLGVLRGSATRLPLAPGRIGTILLDAPCSGLG 358

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            + R PD  W R  +D+      QR +L    + + PGG +V+  C+    ++E  + ++
Sbjct: 359 VLARRPDSKWRRRPEDVAGLTRLQRAMLEAAYAALAPGGRIVYVTCTAHPAENEGNIDRL 418

Query: 381 LRSSPIPVELVPLNSAYWKSID 402
                       + +    ++ 
Sbjct: 419 GARHHDLTLETEIPATPSPTLG 440


>gi|254467784|ref|ZP_05081190.1| sun protein [beta proteobacterium KB13]
 gi|207086594|gb|EDZ63877.1| sun protein [beta proteobacterium KB13]
          Length = 412

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 102/435 (23%), Positives = 186/435 (42%), Gaps = 47/435 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ +LS  +     +  L +            + ++  ++ IV   +R     D +L   
Sbjct: 8   AAKILSE-LISGRKIDTLFNRFLK-------EENNKNFIKDIVYGGIRDFYLNDYILKKF 59

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +   +    + ++ LL  ++ QI +   A++ VV+ AV+ AK+   N  F  LVN++LR 
Sbjct: 60  VKKDIN--DHLIKYLLMNTIYQINHQSKAEFTVVNEAVKAAKKINNN--FYNLVNAVLRN 115

Query: 131 VSREKIE--LLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLTV-KFDI 186
             REK +    + +      P+W+   L   Y  +   +       +   I +   +  +
Sbjct: 116 YLREKDKLVTPEEMYIRYSYPQWWVSDLMKEYPNDYEAILAIGNTRAKTVIRINQRQISL 175

Query: 187 ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
             +   L    +                + I  LPG+  G ++VQD +A +        N
Sbjct: 176 NDYIDLLEQANIDYELTLEDKYIQISNVKDITMLPGYERGHFYVQDPAAQLACDFLDIQN 235

Query: 242 NLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            +++LDLC+APGGK   +       +   D+SK R+  +R N+ RL L +  I ++D   
Sbjct: 236 GMNILDLCSAPGGKATHILERFDVDLDCYDISKERINLIRSNMKRLQLKSNIIEKIDIN- 294

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               K +D +L+DAPCS +G +RR+ D+   R   DI K +  Q +LL +G   +K GG 
Sbjct: 295 ----KRYDRILIDAPCSGSGVVRRNIDIKLMRKQQDIEKFSNQQLQLLEEGWKILKSGGK 350

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++  CS+ K ++E VV K L  +        +    +K  +           ++ P+  
Sbjct: 351 LLYVTCSIFKHENENVVMKFLSKNKDAASQDLIIPNGFKYQNT----------QLIPNQF 400

Query: 421 EKIDGVSSGMDG-FF 434
                     DG FF
Sbjct: 401 ---------HDGLFF 406


>gi|319782260|ref|YP_004141736.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168148|gb|ADV11686.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 429

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 158/450 (35%), Gaps = 48/450 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  + R+   +   L        F      D+  +  IV   LR       +L 
Sbjct: 8   AAAIEVLEDIGRRHRPVADALKDWGLSHRFAG--GGDRAAIGNIVYDALRHKRSAGWLLG 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                ++      L+                    ++ A++       ++    L+ +  
Sbjct: 66  QDTPRAIGFGALLLEW-------------GQTAQSLNEALD------GDKFAPPLLTAAE 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
            +   +        A  + +P+W     E  +G         A  +   +DL V     +
Sbjct: 107 LQAIADGRLADAPDAVRADVPDWCAPLFERAFGSSWA-DEGAALATRPPLDLRVNTLQAN 165

Query: 186 IETWAHKLNAVMLPTGGIRLKE----------LPESIVSLPGFAEGVWWVQDASASIPVQ 235
            +    +L         I                 ++ + P F +G + VQD  + I   
Sbjct: 166 RDKVLAELTGTGAKPAAIAPHGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAAA 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G    + VLD CA  GGKT   +  + +  ++ A D  K RL  +   + R       
Sbjct: 226 LAGAEAGMQVLDFCAGAGGKTLALSASMENRGQIFAHDAEKARLAPIFDRIRRSENRNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           ++             D VLVDAPC+ +GT RR PD  W      +      Q  +L    
Sbjct: 286 VVTKPTELAPLGNHMDIVLVDAPCTGSGTWRRRPDAKWRLTQRQLDTRKGEQSAILDAAK 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE 410
           ++VKPGG++V+  CS+  +++ E +      +   V +    L  + +     A  +  +
Sbjct: 346 AYVKPGGLLVYITCSVFDEENGEQIAAFRDRNSGFVPVDHRQLWDSRFPGHPAAARIGAK 405

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G I ++P          SG DGF+  ALRR
Sbjct: 406 GDISLSP--------ALSGTDGFYFCALRR 427


>gi|323699391|ref|ZP_08111303.1| Fmu (Sun) domain protein [Desulfovibrio sp. ND132]
 gi|323459323|gb|EGB15188.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans ND132]
          Length = 424

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/419 (22%), Positives = 158/419 (37%), Gaps = 30/419 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR V+   L   +  R  +   LD             RD  L   +    LR   
Sbjct: 7   KPLPAARRVALEALFRCLMNRQDIQASLDAALSSGVD---DPRDLGLATELSYGYLRLKG 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           RI+ VL   L     +    ++  + V+  +IL+LD +  YA VD AVE +K     R  
Sbjct: 64  RIEYVLSRFL-KDPGKLNPKMRLAMGVAAYEILFLDKIPAYASVDWAVEFSKSKPGAR-L 121

Query: 121 AKLVNSILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKERVLAI 168
           A L N++LRRV+    +                 +     P+W  +     YG++     
Sbjct: 122 AGLFNAVLRRVAELDGDAHDPDFFRKDASLPEFLSRWYACPQWLVDLWWREYGEKTATDY 181

Query: 169 SDACISPLYI--DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            +A + P  +  +L    + +    ++           +     +  S  G  +     Q
Sbjct: 182 LEAQLKPPALGFNLFGHPEADALYAEIAGWPELIDIEGMSFALPAGTSFEGEPDPPLARQ 241

Query: 227 DASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
             +A   V+            D CA  GGKT  L+  G  V A D  + RL  L      
Sbjct: 242 SFAARQAVEALDPEMWDGPVWDACAGRGGKTRILLEKGLDVLASDPHRGRLAALSRE--- 298

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
             L   +I E +A    P ++   +L+D PCS  G + R PD  W R   D+      QR
Sbjct: 299 --LPGVEIFEANAATAEPPRVPGTILLDMPCSGLGVLSRRPDTKWKRRPADLGDLTLLQR 356

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           ++L   +  V+PGG +    C+L+ ++++ +V + +       E V +   +    D  
Sbjct: 357 EILDNALEQVRPGGRIAVITCTLNPEENQGLVARFVGDH----ERVAVEREWTTPSDSP 411


>gi|209542229|ref|YP_002274458.1| Fmu (Sun) domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529906|gb|ACI49843.1| Fmu (Sun) domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 429

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 102/460 (22%), Positives = 176/460 (38%), Gaps = 49/460 (10%)

Query: 1   MKSGMNARLVSS-HLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M     ARL ++  LLS +    R     + +  + +  +  +   D+  + A V   LR
Sbjct: 1   MTPS--ARLAAAIDLLSAMEATPRRPADAVANAFFRERRY--IGGGDRRAISARVWTVLR 56

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
               +   LD            + +  L  ++A +              +  ++     +
Sbjct: 57  HWRHLAWWLDRA------GAAATPRARLIAALALM-----PQPGEAPQDLFVSQDRYAPQ 105

Query: 119 HFAKLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             +     +  R   +  +      A    +P+W   RLE  +G + + A   A      
Sbjct: 106 PLSAAERDLATRLRGQAMVHPDMPRAVRLEVPDWLLPRLEETFGAD-LDAEVAALAGEAT 164

Query: 178 IDLTVKFDIETWAHK--------LNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDA 228
           +DL V     T A          + A         L+    + + +   F  G+  +QD 
Sbjct: 165 LDLRVNLLKTTRAEAARLLAADGIMAEPTGLSPWGLRVPGRQPVTATAAFKSGLVEIQDE 224

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
            + I V        + VLD CA   GK    A  + +   + A DVS+ RLE     L R
Sbjct: 225 GSQIVVAAADARPGMRVLDYCAGAAGKTLGMAMTMENRGHIVACDVSEPRLEGAVRRLRR 284

Query: 286 LHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             ++  +       D +       FD VLVDAPC+ TGT RR+PD        D+ +   
Sbjct: 285 AGVHNAERHLLVPGDRWARRRAASFDRVLVDAPCTGTGTWRRNPDARLRLTEQDLAELMA 344

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  +L    + V+PGG +V++ CS+ ++++++ +   LR+SP       +        D
Sbjct: 345 KQADILATASALVRPGGRLVYATCSILREENQDRIASFLRASPHFRRAETVP-------D 397

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +A  L+ +G I ++P        +  G DGFFA  L R  
Sbjct: 398 LAPDLAQDGMIALSP--------LRHGTDGFFAAILERTA 429


>gi|254373278|ref|ZP_04988766.1| sun protein [Francisella tularensis subsp. novicida GA99-3549]
 gi|151571004|gb|EDN36658.1| sun protein [Francisella novicida GA99-3549]
          Length = 426

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/448 (22%), Positives = 192/448 (42%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +    L      K      L+ +   QI  +    YA ++  V  A +D +     KLV
Sbjct: 57  KITALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKDLKIIWAKKLV 112

Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N ILR ++R   ++  +        +PEW  + L+  Y  + ++        + ++I L 
Sbjct: 113 NRILREITRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              + +      +   +      LK+  +      +     F +G + +QD SA     +
Sbjct: 173 QNKNNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293
               NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL+R    +  ++
Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +
Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKNLQSKILANLWN 351

Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +   G +++  CS+  +++++ +++ L  +         N+A    ID+         
Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKQFLAKN---------NNAEIIEIDILEKYKTSYG 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ P   +         DGF+   L++
Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422


>gi|307728146|ref|YP_003905370.1| sun protein [Burkholderia sp. CCGE1003]
 gi|307582681|gb|ADN56079.1| sun protein [Burkholderia sp. CCGE1003]
          Length = 479

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/449 (23%), Positives = 183/449 (40%), Gaps = 27/449 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V     +L   L   +  SA    +   +  V+ I   T+R L   + ++  +
Sbjct: 38  AAQAVGAVRL-GAALPAALQSVFV-SAPEGSAAAARGAVQDIAYRTMRRLGTAEWLIARL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  +L  ++A ++  + +     + VVD AV      +E      LVN+
Sbjct: 96  VKKAPP---PHVGHVLACALALLIDDEASAAYTPFTVVDQAVRAISARREFTFAKGLVNA 152

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LR   RE+ +               P W+ + +   + +     ++         + + 
Sbjct: 153 VLRNFLREREQLLTEAQSDEVARWNYPTWWIDAVRRAWPEAWQDVLAAGNTQGPLTLRVN 212

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
            +        +L            +   +      +  +PGF EGV  VQDA A +  QL
Sbjct: 213 ARHSTVEAYLQLLEQHHIAASKAGEHAVKLATPMPVDRIPGFNEGVVSVQDAGAQLAAQL 272

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291
            G  + + VLD CAAPGGKT  L+  +  ++ AL+    R  ++  NL RL L AE    
Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVARARRIGENLQRLKLEAEVRIG 332

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           D      +     + FD +L D PCS++G +RRHPD+ W R   DI      QR++L   
Sbjct: 333 DAGAPSKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVDEQRRILGAL 392

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VKPGG +++  CS+  ++ E   Q    +    V L         S+  A A +  G
Sbjct: 393 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNNHQDAVRL-DAPGQLLPSVARAPADTSAG 451

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +   G +S  DGFF    ++
Sbjct: 452 SH--AGGFADTSAGANSDHDGFFYARFQK 478


>gi|296533616|ref|ZP_06896179.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296266054|gb|EFH12116.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 376

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 193/385 (50%), Gaps = 25/385 (6%)

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            LR L  +DAVL+  L    P     ++  LR+  A++L L+   +A V   V+      
Sbjct: 14  VLRRLGSLDAVLEPSLRREPP---PEVRNALRIGAAELLLLETPPHAAVASCVDLV---- 66

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACIS 174
             R FA LVN++LR+V+      L+ + G     P W        YG   V AI+ A   
Sbjct: 67  -PRPFAGLVNAVLRKVAAAGPAALEELDGERLDTPGWLWSAWHGAYGP-AVRAIARAHRL 124

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
           P  +DL++K             ++   G         I  LP FAEG+ W QDA+A++P 
Sbjct: 125 PAPLDLSLKPGTPA----PEGALMLPTGTARFPAGTRITELPAFAEGLAWAQDAAAALPA 180

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           +L      + V DLCAAPGGKTAQL  +GA VTA++    RL +LR N+ RL L   + +
Sbjct: 181 RLLAVTPGMLVADLCAAPGGKTAQLAAAGAAVTAVERDPTRLLRLRENMARLGLP-VESV 239

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           + D  ++ P   FDA+L+DAPCS+TGTIRRHPDV   +   DI   A  QR+LL      
Sbjct: 240 QADVAEWDPGTRFDAILLDAPCSATGTIRRHPDVPHLKRPGDIATLAGLQRQLLAAAARL 299

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           + PGG +VF+ CSL  ++ E            P  L+P      +   +  ALSP+GW+R
Sbjct: 300 LAPGGRLVFATCSLQPEEGEAQAA------SPPPGLLPDPIRPEEVPGLEAALSPQGWLR 353

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALR 439
             PD+  +      G+DGFF    R
Sbjct: 354 TRPDLWAE----QGGLDGFFMARFR 374


>gi|160900802|ref|YP_001566384.1| Fmu (Sun) domain-containing protein [Delftia acidovorans SPH-1]
 gi|160366386|gb|ABX37999.1| Fmu (Sun) domain protein [Delftia acidovorans SPH-1]
          Length = 470

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 159/457 (34%), Gaps = 49/457 (10%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+   +        ++   + ++    L  R++  +       LR     +++   
Sbjct: 37  ACAELVKRTLTFEHPADAVVSRFFRENR--NLGPRERAALAETAYTVLRKKLLFESLARS 94

Query: 70  VLISSLPRKK-----YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
              S   R       +S + L RV+              V  A+  A+     +   + +
Sbjct: 95  GSGSRERRLAILGFAHSQEALARVA--------GKSEQGVKEALGFARAALSPQEL-QWL 145

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLTV- 182
           ++       E +E          +PEW    L+   G++    A S    +PL + +   
Sbjct: 146 DACDAVRPDELMEPH-----RHNLPEWLVAPLKQQLGEDFWAFAQSMEQAAPLDLRVNAL 200

Query: 183 KFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                    +L    +              +   ++  L  F  G   VQD  + +   +
Sbjct: 201 NAKRADVQKELADAGIAAEATPYSPWGLRVQGKPALARLDAFTRGAIEVQDEGSQLLALM 260

Query: 237 FGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED- 292
                   V+D CA  GGK       + S  ++ A DVS  RLE L+  L R  L     
Sbjct: 261 LDAKRGEMVVDFCAGAGGKTLAIGASMRSTGRLYAFDVSGHRLEALKPRLARSGLSNVHP 320

Query: 293 ---IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                E D          D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L 
Sbjct: 321 AAIAHERDDRVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAKAIEELTQKQAAILA 380

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-----ELVPLNSAYWKSIDMA 404
                VKPGG +V++ CS+  Q++E + +         V     EL+        +   +
Sbjct: 381 SAARLVKPGGRLVYATCSVLPQENEAIAEAFASEHSDFVAMDAGELLAQLKVEQGNALCS 440

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +   ++R+ P             DGFFA    R 
Sbjct: 441 GGETGTQYLRLWPQ--------RHETDGFFAAVWTRK 469


>gi|94311809|ref|YP_585019.1| Fmu (Sun) [Cupriavidus metallidurans CH34]
 gi|93355661|gb|ABF09750.1| tRNA and rRNA cytosine-C5-methylase [Cupriavidus metallidurans
           CH34]
          Length = 466

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 99/445 (22%), Positives = 163/445 (36%), Gaps = 53/445 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  V+        ++   + +++   L  RD+ ++   +   LR              
Sbjct: 56  RLLGKVLLFARPSDAVVSHYFRENS--KLGHRDRGIIAEAIFAVLRRRVEF----GQFAE 109

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                         A   +  L +           F     ++     
Sbjct: 110 SG---------------------TGSATRRLGLLGLAATLGRDVLSPFLHPDEAVWLDRL 148

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                        + +PEW  + L   +G+    A+ DA + P  +DL V       E  
Sbjct: 149 TTIERSSLAPRVRANLPEWLYDDLVARHGEAFTAALGDAWLRPAPLDLRVNTAKLSREEA 208

Query: 190 AHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
             +L    +      +           ++  LP F  G   VQD  + +   L       
Sbjct: 209 LAELQTAGIAAELAPMAPAGIRLKGKPALNQLPLFINGGVEVQDEGSQLLCHLLAPRRGE 268

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296
            V+D CA  GGKT      + S  ++ A DVS++RL  L+  L R  L     +    E 
Sbjct: 269 MVVDFCAGAGGKTLALGVAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHPVLIDSER 328

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           DA         D VLVDAPCS  GT+RR+PD+ W +  + +V+    Q  +L      VK
Sbjct: 329 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTPESVVELTAKQAAILDAAAKLVK 388

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK-SIDMAMALSPEGWIRI 415
            GG VV++ CS+ + ++E +++  L S      LVP++    +  I++    +  G + +
Sbjct: 389 GGGRVVYATCSVLEAENEAIIRDFLASH-ENFRLVPVSEVLAEQKIEVPELPAEGGMLAL 447

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P +           DGFFA  L R
Sbjct: 448 YPHI--------HQTDGFFAAVLER 464


>gi|315499648|ref|YP_004088451.1| fmu (sun) domain protein [Asticcacaulis excentricus CB 48]
 gi|315417660|gb|ADU14300.1| Fmu (Sun) domain protein [Asticcacaulis excentricus CB 48]
          Length = 429

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/463 (20%), Positives = 169/463 (36%), Gaps = 53/463 (11%)

Query: 1   MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL ++  +L  + + R     +L     ++ +     +D+  +   V   LR 
Sbjct: 1   MTP--AARLQAASDILDLLSKTRRPAEEVLKDWGRNNRYAG--SKDRRAIADKVYQCLRA 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             R+   +D                 L +    + +LD      +    +          
Sbjct: 57  RERLSFAMDSSAGR-----------ALVLGA--LHFLD---GVSLSEIDDL----YTGEG 96

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +A    S+  R   E  +        S +P +  ERL++ YG + +       +    ID
Sbjct: 97  YAPPKLSVAERKRLEAGDGEAPEWLESGLPAFVVERLKSVYGDDWLKEAEALMLPRAPID 156

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASAS 231
           L V  D       L  +                      ++ +LP F +G   +QD  + 
Sbjct: 157 LRVNGDRAPLIAGLEMLGYRPEPTPFSAFGVRLPADPPPNVRALPAFRQGTIEIQDEGSQ 216

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   L G +  ++V+D CA  GGKT    Q +    ++ A DV K RL  ++  L R  L
Sbjct: 217 LAGFLAGAMPGMTVVDYCAGGGGKTLALLQAMQGEGRLIASDVEKTRLNNIKPRLTRAGL 276

Query: 289 YAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            AE              +   D VLVDAPCS +G  RR P+        ++ +    Q  
Sbjct: 277 EAELRQLGPDGEGMEDLEAQADLVLVDAPCSGSGVWRRRPETAHKLQEQEVARLHELQSA 336

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-----VELVPLNSAYWKSI 401
           +L +    VKPGG++ ++ CS+   ++E    +     P        E +   +   +  
Sbjct: 337 ILHRASRLVKPGGLLAYATCSILPDENEMTADRFEADHPWFTPRPVAEALDSAAVTPEGA 396

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           +    ++    +R++P         +S  DGFF    RR  +P
Sbjct: 397 ETLKNIAQGHRLRLSPG--------TSHTDGFFVSLYRR--KP 429


>gi|212225090|ref|YP_002308326.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
 gi|212010047|gb|ACJ17429.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
          Length = 442

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/411 (20%), Positives = 163/411 (39%), Gaps = 36/411 (8%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           +  I     R L  ID +++ ++  S       L+  LRV++ ++               
Sbjct: 48  LTGIFYSIQRRLGLIDEIIEELIGVSPLILDPWLRATLRVAI-EVAIFRDPSERTRQHLK 106

Query: 109 EQA-----KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
             A     K      ++   +   +     +     +R+    + PEWF +R       +
Sbjct: 107 GLAQFLSKKTHPFVGYYYYDLLPRILEYVPKLDTEEKRLKWDYLFPEWFIKR-MKELIGD 165

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP------- 216
               +  A    L + + V     +     + +          E   +++ +        
Sbjct: 166 EAEELLKALNETLPMSMRVNLLKTSVDEVEDYLKSKNVRFERSERVGTVLRILDSFNPEW 225

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
            F +G    Q+ +A++   +       +V+DL AAPGGKTA +   + +  K+ A D+  
Sbjct: 226 LFNKGWTIPQEEAAAVASLVLAPEPGETVVDLAAAPGGKTAHMAELMNNTGKIYAFDIDS 285

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLW 330
            R+++++  L R  +   + I+ D         +K+ D VL+DAPC+S GTI ++P++ W
Sbjct: 286 ARIKRMKEVLRRAGVEIAETIKADGRKAPEILGEKIADRVLLDAPCTSDGTIVKNPELRW 345

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                +I K    Q++L+      +KPGG +++S CS+  +++E VV+  L       EL
Sbjct: 346 RLREKNIPKVVQLQKELIESAWKLLKPGGRLLYSTCSMLPEENEGVVEWFLTRH-EDAEL 404

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +PLN  Y             G +R  P              GFF   + + 
Sbjct: 405 IPLNGPYDGGF-------LSGTMRAWPH--------RHRTIGFFYALIEKK 440


>gi|256825115|ref|YP_003149075.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547]
 gi|256688508|gb|ACV06310.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547]
          Length = 502

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 99/473 (20%), Positives = 158/473 (33%), Gaps = 56/473 (11%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           L   + +       L           L+ RD      +   T+R     D V+      +
Sbjct: 39  LLAAVDEGAYANLELPHVLRRFR---LAGRDAAFATELAFGTVRQQGLYDLVIARATGRA 95

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
           +      L + LR+   Q L + V  +A  D  V  A R       AKLVN+ + R++ +
Sbjct: 96  VDTLDPELMRTLRLGAHQALSMRVPPHAAADQTVALA-RWVNGAGPAKLVNAAMHRMTEK 154

Query: 135 KIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAISDACISPLYI 178
             E                A     P W    L           E +  +  A  +P  +
Sbjct: 155 DRETWVAEVTEGLQGPDLLAARHSHPTWVVRALMAGLVDRGRPVEEIDELLAAHNTPALV 214

Query: 179 DLTVKFDIETWAHKLNA---VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            L  +      +  L                    +  ++    +G   VQD  + +   
Sbjct: 215 SLVARPGWVEVSELLEHPAVEEGRWAPTAATLSEGAPAAVSAVEQGRAGVQDEGSQLAAL 274

Query: 236 LFGT-----LNNLSVLDLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
                     ++   LDLCA PGGK A         GA++ A ++   R E +R  L+  
Sbjct: 275 ALAGAPTRGQDSGLWLDLCAGPGGKAALLAATAHERGARIVANELHPHRAELVRGTLNPG 334

Query: 287 HLYA-------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            L           + +           FD VLVD PC+  G +RR P+  W R   D+  
Sbjct: 335 GLPDGAAPQAEVTVGDGADLAAERPDAFDRVLVDVPCTGLGALRRRPEARWRRQPADLAS 394

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAY 397
            A  QR LL   +  V+PGG++ +  CS    ++  VV  V         +E+ P+    
Sbjct: 395 LAPTQRSLLHAALDAVRPGGVMAYVTCSPHPAETSVVVDDVRARRDDVELLEVAPVLREV 454

Query: 398 WKSIDMAMALSPEGW-------IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             +   A     EG        +++ P +         G D  +   LRR  Q
Sbjct: 455 APATSAADLEPLEGARGARATSVQLWPHV--------HGTDAMYIALLRRTPQ 499


>gi|257125452|ref|YP_003163566.1| Fmu (Sun) domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049391|gb|ACV38575.1| Fmu (Sun) domain protein [Leptotrichia buccalis C-1013-b]
          Length = 433

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/456 (20%), Positives = 195/456 (42%), Gaps = 38/456 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N +L   +LL  + +        L+  +    +   ++++++ +  +VN+ ++ L
Sbjct: 1   MAKKKNIKLDIVNLLDEI-QNGKYSNIQLNYYFSKKNY---TKKEKMFITNVVNIVIKNL 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             ID ++   + +   RK   ++QLLR+SVAQ+ +++  +  V+  A E AK    N H 
Sbjct: 57  IYIDYLIGKSVRNVKKRK---IKQLLRISVAQLFFMESDNAGVIFEAGEIAK--ILNAHQ 111

Query: 121 AKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
              VN+ L+          E+I    R + +   P+WF  +++  Y  + +  +  +   
Sbjct: 112 VGFVNAALQTILKNKEKFNEEIPKDNRESIVLSYPQWFVNKMKIDYPDDYLEML-KSYKK 170

Query: 175 PLYIDLTVKFDI------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
             Y+ +    +       E     +   +L + G        +I     +  G   +QDA
Sbjct: 171 RSYLSVRFDKNKITSEKFEELLKNIKTDVLFSVGEVYYLSNANIFDTEIYKNGNVVIQDA 230

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           S+ + V+  G  +  +VLD C+APGGK      + +  K+T+ D+ + +++ L    ++ 
Sbjct: 231 SSYLAVKNLGVKDGETVLDACSAPGGKSLAILQLFNPKKLTSTDIHEHKVKLLNELKNKY 290

Query: 287 HLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                ++   DA         FD +L+D PCS  G +R+ P+ ++    +DI      Q+
Sbjct: 291 GYSNFEVKLNDAAQIENLNTKFDKILLDMPCSGLGVLRKKPEKIYELTANDIKSLKKLQK 350

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           K+     + +K GG +++S C+  K ++   +Q  L        L  +     +++    
Sbjct: 351 KIFESAYNCLKNGGEMIYSTCTFSKNENTNNIQYFLEKYEDLEILEVVIPENIETVR--- 407

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                G + I           +  +DGF+   LR+ 
Sbjct: 408 --DEFGGVYI--------SYKNEYLDGFYIAKLRKK 433


>gi|209515830|ref|ZP_03264692.1| sun protein [Burkholderia sp. H160]
 gi|209503678|gb|EEA03672.1| sun protein [Burkholderia sp. H160]
          Length = 479

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/449 (22%), Positives = 174/449 (38%), Gaps = 27/449 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V     +L   L   +        +   +  V+ I   T+R L  ++ ++  +
Sbjct: 38  AAQAVGAVRL-GAALPAALQSVFVTVPEGNAAAA-RGAVQDIAYRTMRRLATVEWLIAKL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVAD----YAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  +L  ++A ++  + +     + VVD AV      +E      LVN+
Sbjct: 96  VKKAPP---PHVTHVLECALALLVDDEASAAYTSFTVVDQAVRAIGARREFAFAKGLVNA 152

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LR   RE+      +          P W+ + ++  + +     +          + + 
Sbjct: 153 VLRNFLRERDTLLAAVQADEVARWNYPAWWIDAVKRAWPEAWQSVLDAGNTQGPLTLRVN 212

Query: 182 VKFDIET-----WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            +             +  A                +  +PGF+EG+  VQDA A +  QL
Sbjct: 213 ARHSTVDAYLQVLQRQQIAATKAGEHAVTLATAMPVERIPGFSEGIVSVQDAGAQLAAQL 272

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291
            G  + + VLD CAAPGGKT  L+  +  ++ AL+    R  ++  NL RL L AE    
Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANIQLVALESDASRARRIGENLRRLKLEAEVRIG 332

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           D      +     + FD +L D PCS++G +RRHPD+ W R   DI      QR++L   
Sbjct: 333 DAGAPAQWHDDLDQPFDRILADVPCSASGIVRRHPDIRWLRRQSDIAALVAEQRRILDAL 392

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VKPGG++++  CS+  ++ E   Q         V L                 S  G
Sbjct: 393 WPLVKPGGVLLYVTCSIFPEEGEMQAQWFGNQHQDAVRLDAPGQLLPSVARAPADPSA-G 451

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                P             DGFF    ++
Sbjct: 452 SHAGQPTEFSAGANSDH--DGFFYARFQK 478


>gi|50365012|ref|YP_053437.1| tRNA and rRNA cytosine-C5-methylase [Mesoplasma florum L1]
 gi|50363568|gb|AAT75553.1| tRNA and rRNA cytosine-C5-methylases [Mesoplasma florum L1]
          Length = 425

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 185/455 (40%), Gaps = 58/455 (12%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N+R ++  +L  V + +     LL+          +S + + L+ AIV+ T+     +D 
Sbjct: 8   NSRKIAFEILKKVFKNKSFSNILLNDVSKMP----ISDKFKNLIFAIVHGTITNQILLDH 63

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           V   ++   + +    +Q LL +S+ Q+ +L  +  YAVV+ +V  AK    N  F+ L+
Sbjct: 64  VSRKLID--VKKTNIDIQILLWMSIYQLRFLKTIPQYAVVNESVMIAKSV--NHKFSGLL 119

Query: 125 NSILRRVSRE--------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           N+ L++V +              Q+I   +  P+     +E  YGK+    ++       
Sbjct: 120 NACLKKVIKNEEELFDFSFKSENQKICIENSFPKNLFNLIEKGYGKDIAKKVAIDSNQKP 179

Query: 177 YIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            I   V           E +  +            +    ++IV    +  G   +QD +
Sbjct: 180 VISFRVNTLKISENDFFEKYKDEYELEKTEIKNCLI--SKKAIVKSDAYTSGQITIQDPA 237

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   +        VLD+C+APGGK      ++ +  +VT  ++S+ +++ +  N+ RL
Sbjct: 238 SILVGNVLNPTKGSKVLDMCSAPGGKLTHLSMIMENTGQVTGFEISENKIKLIEENIKRL 297

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF-QR 345
                 +   DA     K+ FD +L+DAPCS  G ++R P++       + + +    Q 
Sbjct: 298 DCKNISLKCGDATLINEKENFDFILLDAPCSGFGVLKRKPEIKINNIEINNINNIVNIQE 357

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           KLL      +K  G++V+S C+++  +++  ++K +        +               
Sbjct: 358 KLLDTAYYNLKQQGVMVYSTCTINPAENQNQIKKFIEKYKDIKIISE------------- 404

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++ G     DGF+   + +
Sbjct: 405 ---------------NQLFGYEMNTDGFYICKMIK 424


>gi|323524427|ref|YP_004226580.1| sun protein [Burkholderia sp. CCGE1001]
 gi|323381429|gb|ADX53520.1| sun protein [Burkholderia sp. CCGE1001]
          Length = 479

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/449 (24%), Positives = 179/449 (39%), Gaps = 27/449 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V     +L   L   +  SA    +   +  V+ I   T+R     + ++  +
Sbjct: 38  AAQAVGAVRL-GAALPAALQSVFV-SAPEGSAAAARGAVQDIAYRTMRRFGTAEWLIARL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  +L  ++A ++  + +     + VVD AV      +E      LVN+
Sbjct: 96  VKKAPP---PHVGHVLACALALLIDDEASAAYTPFTVVDQAVRAISARREFSFAKGLVNA 152

Query: 127 ILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LR   RE+     E           P W+ + +   +       ++         + + 
Sbjct: 153 VLRNFLRERDVLLTEAQADEVAHWNYPTWWIDAVRRAWPDAWQDVLAAGNTQGPLTLRVN 212

Query: 182 VKFDI-ETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            +    E + H L     A             P  +  +PGF EGV  VQDA A +  QL
Sbjct: 213 ARHSTVEAYLHVLEQHHIAASKVGEYAVKLATPMPVDRIPGFNEGVVSVQDAGAQLAAQL 272

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291
            G  + + VLD CAAPGGKT  L+  +  ++ AL+    R  ++  NL RL L AE    
Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKLEAEVRIG 332

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           D      +     + FD +L D PCS++G +RRHPD+ W R   DI      QR++L   
Sbjct: 333 DAGAPSKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVEAQRRILDAL 392

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VKPGG +++  CS+  ++ E   Q         V L                 S   
Sbjct: 393 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNKHQDAVRLDAPGQLLPSVARAPADPSAGS 452

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  E+  G +S  DGFF    ++
Sbjct: 453 HA---GEFAERSAGTNSDHDGFFYARFQK 478


>gi|329115347|ref|ZP_08244101.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
           pomorum DM001]
 gi|326695326|gb|EGE47013.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
           pomorum DM001]
          Length = 437

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 165/439 (37%), Gaps = 44/439 (10%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
           R     + +  + +  +  +   D+  +  +V   +R   R+   L+         K   
Sbjct: 22  RKPADAVANSFFRERRY--MGGGDRRAISGLVWDVMRAWRRLGWWLEQ--------KGQV 71

Query: 82  LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
               LR    ++L+ D    A V+   EQ  R          ++++     +        
Sbjct: 72  ASARLRAGA-RLLF-DGFSLAEVEEMFEQ-GRFAAGALTRGELSTLTPLAGKTLDNPEMP 128

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--------DIETWAHKL 193
            A    +P+W    L      +++     A  +P  +DL V                  L
Sbjct: 129 RAVRLELPDWLLPHL-EATFGDKLEEELAAMSTPAPLDLRVNILRGPRKEAQRSLACEGL 187

Query: 194 NAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           +A   P     L+      + +   F +G+  +QD  + +   + G    + VLD CA  
Sbjct: 188 HAEPTPLSPWGLRLPARLPVTTSVAFRDGLVEIQDEGSQLVAAISGVEPQMRVLDYCAGA 247

Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPKKL 306
           GGK    A ++ +   + A DVS  RLE     L R  ++  +       D +       
Sbjct: 248 GGKTLAMAMMMENKGHIVACDVSAPRLEGAVKRLRRAGVHNVERHLLVPGDKWAKRRAGS 307

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VLVDAPCS TGT RR+PD  +     D+ +    Q  ++ +  + V+ GG +V++ C
Sbjct: 308 FDRVLVDAPCSGTGTWRRNPDARFRTTEQDLTELLEKQAAIMDRAAALVRAGGRMVYATC 367

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           SL + ++ + V   L   P    +   +    +++    ++S              +  +
Sbjct: 368 SLLRAENMDQVTAFLARHPDFRLVPSGSPEMPQALRQESSIS--------------LSPL 413

Query: 427 SSGMDGFFAVALRRLIQPK 445
             G DGFFA  + R   P+
Sbjct: 414 RDGTDGFFAAVMERAA-PE 431


>gi|167043506|gb|ABZ08202.1| putative NOL1/NOP2/sun family protein [uncultured marine
           microorganism HF4000_APKG2J17]
          Length = 444

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 157/467 (33%), Gaps = 49/467 (10%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  LL  +           D  +    +      D+  V  I+   +R 
Sbjct: 1   MTPG--ARMQAAIELLELIWSGIEPADRAADDYFRKRRYAG--AGDRRAVNGILYDVMRH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             R+D  +      +    + + +   RV +A++   + +      +    A        
Sbjct: 57  RARLDWWIG----RTGVGLEPTART--RV-IAELALENKSSPEETGVLFNGA-SHCPEPM 108

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                        R               P+W    L+  +  ER+ A   A      +D
Sbjct: 109 NPAEAALAEALHGRPLTHADMPAPVTLEYPDWMDRSLKALWP-ERLAAEMSALNQQAPVD 167

Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASA 230
           L V       +     L    + T    L  +   + +         F +G   VQD  +
Sbjct: 168 LRVNMLKTTPDQARQSLKEDFVETEPTPLSPIGLRLTARARLAGTAAFRKGWIEVQDEGS 227

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV------------TALDVSKRRLEK 278
            +   L      + V+D CA  GGK   L                    A D+S  RLE+
Sbjct: 228 QLIALLADARPGMKVVDFCAGGGGKALALAACMGSRGNGGGGTIEGSLWATDISGYRLER 287

Query: 279 LRCNLDRLHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           +   L R               D +        D VL D PC+ TG  RR PD  W    
Sbjct: 288 MTPRLKRAGAEKIKTRVIAALHDDWIGKNAGKMDRVLADVPCTRTGAWRRVPDARWRSTL 347

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           DD+      QR++L      VKPGG ++++ CSL ++++E  +   L       + +P++
Sbjct: 348 DDLDDMIAVQRRILASAQILVKPGGRLIYATCSLLQEENERQLAWFLEKH-GDFQALPID 406

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +++      +    +R++P         S+G DGFF   + R 
Sbjct: 407 QVWAETVGGPPPPTGP-CLRLSP--------ASTGTDGFFCAVMERK 444


>gi|148654179|ref|YP_001281272.1| Fmu (Sun) domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148573263|gb|ABQ95322.1| Fmu (Sun) domain protein [Psychrobacter sp. PRwf-1]
          Length = 528

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/527 (21%), Positives = 210/527 (39%), Gaps = 108/527 (20%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R+   + L  + ++  SL+ LLD          L+  D+    A++  TLR       
Sbjct: 13  NVRVAVINTLLSI-QQGQSLSGLLDPLL-----NSLNGDDKGFAHALLLTTLRHWHATAR 66

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +LD +  + +   +  ++  +++ + Q+LYL+VAD+A +   VE A +  +    + LVN
Sbjct: 67  LLDSLADNPIDEIE--VRTTIQLGITQLLYLNVADHAAIHETVE-AVKHIDYARASGLVN 123

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPLYIDLT-VK 183
           ++LR+V++   +  ++      +P W  ++L+  + +            +P+++ +  ++
Sbjct: 124 AVLRKVAKNPNKFRKKANKNHSLPNWLAQQLKVDWREHYDELTQSLRQSAPMFLRVNGLQ 183

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE---------------------SIVSLPGFAEGV 222
            D +++  +L    +    I L+   +                      +  LP F EG+
Sbjct: 184 TDSQSYLAQLTEADIAAELIALETSLKMPDTGETIGIKQQAIELIDSVPVSRLPEFEEGI 243

Query: 223 WWVQDASAS----------IPVQLFGTLNNLSVLDLCAAPGGKTAQL------------- 259
             VQDA A             V       ++ +LD CAAPGGK A               
Sbjct: 244 ASVQDAHAQLAAPIIDALLQQVMSANPAEHIRLLDACAAPGGKLAHWLELLGNQEKQQTG 303

Query: 260 ------------IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPK 304
                        +   K+TA+D    R+ ++  NL+RL L A  +     +D       
Sbjct: 304 LFHVKQSDSQESTIDKVKLTAIDNEAPRITRIFENLERLQLPAPIVNSKLHLDIECVDAT 363

Query: 305 KL-----------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                        FDA+L+DAPC++TG IRRHPD+   R+ +D+  +   Q ++L     
Sbjct: 364 TWQAKAVSADSSGFDAILLDAPCTATGVIRRHPDITLLRNEEDVQHTVQLQEQILDNLWP 423

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K GG +++  CS+ KQ++ E +Q  L      V +   +   W        +  E   
Sbjct: 424 QLKTGGYLLYVTCSILKQENVEQMQAFLSRHKDAVAIAFDSETNW-------GIEQEVGR 476

Query: 414 RITPDMLEKI--------------------DGVSSGMDGFFAVALRR 440
           +  P                              +G DGF+   L++
Sbjct: 477 QCLPIYKMTEALAPIAAQDDTPEAAKVQVNAQAPAGGDGFYYAVLKK 523


>gi|206891137|ref|YP_002248173.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743075|gb|ACI22132.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 441

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 179/468 (38%), Gaps = 66/468 (14%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R V+  +L+ V+  +  L   L      +   +  + D+  +  ++   LR L  ID +
Sbjct: 6   PRKVAVEVLNNVVGTKKPLKFALTE----NILSMFDKADRAFLLEVIYGVLRNLYYIDWL 61

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH------- 119
           L+    S   +        LR ++ Q++++ +  YAV +  V   K      +       
Sbjct: 62  LEDFYKSR-EKLSMYTINNLRCAIYQLVFMHIPAYAVANETVNVEKSFNGKPNVVNAILR 120

Query: 120 --FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
               K     + R++ +     + ++ +   PEW   R    +    V A+  A      
Sbjct: 121 NFLRKYQADEIFRITEQMQTDNKNLSVVYSHPEWLITRWLKRFQLNEVKALLKANNEKPP 180

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA--------EGVWWVQDAS 229
           I + VK +      +                   I+   G+            W VQD +
Sbjct: 181 ITIAVKPEERQMIGEYFTQKGFKVSFSKHVASGLIIEGQGYEIRKTLKESPFFWIVQDEA 240

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           + +   L        +LD CA+PGGKT     ++    +  ++ +K+RLE L+ N+ R+ 
Sbjct: 241 SQLVCFLLEPFEGACILDACASPGGKTLLTAALIKKGTIICIENNKKRLENLQENIARVK 300

Query: 288 LY----AEDIIEMDAFDYCPK----------KLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
            +        I  D      K            FD +++DAPCSSTG IRR+PDV +  +
Sbjct: 301 KFLPDVEIQPILADICQISLKKHLDSLGFNTHKFDRIILDAPCSSTGVIRRNPDVRYRVN 360

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
             +I + +  Q+ +L     F+   GI+V+S CS + ++ EEV++  L+       +   
Sbjct: 361 EQEIKRLSKTQKLMLENVSQFLVKNGILVYSVCSTEPEEGEEVIESFLQKHDEFSSIKK- 419

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                              +R  P +         GMDGFF   L R+
Sbjct: 420 -------------------LRTYPHI--------DGMDGFFMGKLLRI 440


>gi|33596603|ref|NP_884246.1| hypothetical protein BPP1987 [Bordetella parapertussis 12822]
 gi|33573304|emb|CAE37287.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 433

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 96/450 (21%), Positives = 161/450 (35%), Gaps = 61/450 (13%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V++       +L           +  RD+  +   V   LR L R          S
Sbjct: 1   MLGEVLQWTYPADAVLSHWLRAHP--GMGGRDRAELAQAVYDVLRHLRRY----RQFAES 54

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            +      L  +L ++          +  V+   +                 +   +  R
Sbjct: 55  GVGPATRRL-AILGLAA-------TMNPEVLAEGL-------------GADEAAWLQRIR 93

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW---- 189
                    A  + +P+W  ERL      E    + DA   P  +D+ V           
Sbjct: 94  HIDVATLPRAVRASVPDWLDERLAQLDDSEA---LLDALNRPANLDIRVNPLKAERDPML 150

Query: 190 -------AHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                  A + +   +P     ++      +   P F +G   VQD  + +   L G   
Sbjct: 151 AVLRAGPAGRFDPQPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRR 210

Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294
              ++D CA  GGKT     L+ S  ++ A DVS  RL + +    R  L     +    
Sbjct: 211 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDS 270

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D            VLVDAPCS  GT+RR+PD+ W +    I +    Q ++L      
Sbjct: 271 ENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKSAARC 330

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V PGG +V++ CSL  +++ E  ++ L   P    L        +  ++ ++     +++
Sbjct: 331 VAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDAAQLLANRCANLTLSGP---YVQ 387

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           + PD+         G DGFFA    R  +P
Sbjct: 388 LRPDV--------HGTDGFFAAVFERR-KP 408


>gi|33601158|ref|NP_888718.1| hypothetical protein BB2175 [Bordetella bronchiseptica RB50]
 gi|33575593|emb|CAE32671.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 433

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 160/450 (35%), Gaps = 61/450 (13%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V++       +L           +  RD+  +   V   LR L R          S
Sbjct: 1   MLGEVLQWTYPADAVLSHWLRAHP--GMGGRDRAELAQAVYDVLRHLRRY----RQFAES 54

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            +      L  +L ++          +  V+   +                 +   +  R
Sbjct: 55  GVGPATRRL-AILGLAA-------TMNPEVLAEGL-------------GADEAAWLQRIR 93

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW---- 189
                    A  + +P+W  ERL      E    + DA   P  +D+ V           
Sbjct: 94  HIDVATLPRAVRASVPDWLDERLAQLDDSEA---LLDALNRPANLDIRVNPLKAERDPML 150

Query: 190 -------AHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                  A + +   +P     ++      +   P F +G   VQD  + +   L G   
Sbjct: 151 AVLRAGPAGRFDPQPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRR 210

Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294
              ++D CA  GGKT     L+ S  ++ A DVS  RL + +    R  L     +    
Sbjct: 211 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDS 270

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D            VLVDAPCS  GT+RR+PD+ W +    I +    Q ++L      
Sbjct: 271 ENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKSAARC 330

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V PGG +V++ CSL  +++    ++ L   P    L        +  ++ ++     +++
Sbjct: 331 VAPGGRLVYATCSLLAEENAGQAERFLAEHPDFERLDAAQLLANRCANLTLSGP---YVQ 387

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           + PD+         G DGFFA    R  +P
Sbjct: 388 LRPDV--------HGTDGFFAAVFERR-KP 408


>gi|288573288|ref|ZP_06391645.1| Fmu (Sun) domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569029|gb|EFC90586.1| Fmu (Sun) domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 473

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 109/452 (24%), Positives = 186/452 (41%), Gaps = 43/452 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +   V R+    +  L      +    +S++D+ L   +V   +R       ++ 
Sbjct: 39  EAALEVWREV-RRGRFASESL-----RAISDRVSEKDRPLAATLVYSLIRRESLWKEIVG 92

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAV-VDLAVEQAKRDKENRHFAKLVNSI 127
             L +       +++  L V  A  L L   +  V V+  VE  K    +   +++VN++
Sbjct: 93  RFLKTGSSGVSPAVRDALMVGAAGSLELRTFEPRVLVNALVEWTK--CRDERGSRVVNAV 150

Query: 128 LRRVSREKIEL---------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           LRR+     E+            +A  S +P W  +  E+ +G+    A+ +    P+ +
Sbjct: 151 LRRIVEGGPEILAEIERSVAFSDLAMRSGVPLWAAKSWESSFGRIEGRALIELHSQPVSL 210

Query: 179 DLTVKF--DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASA 230
            L V    D      +L    +P            +        LPG+ EG    Q  S+
Sbjct: 211 ALRVSTGVDRSEMVQRLEEGGVPAVESPDLPFSIRLEGTALPTILPGYDEGKITPQSESS 270

Query: 231 S-IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
             +P+   G      +LD+CA  GGKT Q       A +   D+S  R++     ++RL 
Sbjct: 271 MLVPLAFTGRGKFSRLLDMCAGRGGKTGQLAQAFPEACLEGWDLSGPRIKAALKEMERLG 330

Query: 288 LYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +     +   D+ +  P  L D VL+DAPCS +GT RRHP+  W    D++ +    Q K
Sbjct: 331 ISDRVKLSVGDSMELDPSFLPDGVLLDAPCSGSGTWRRHPESKWRLSQDELARYGAMQAK 390

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL + +  V  GG V++  CSL ++++E+VV KV+      VEL P +    + +     
Sbjct: 391 LLGRALDLVSTGGTVLYCTCSLFREENEQVVAKVMSGRSDVVELEPPH----ELVSRCRK 446

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             P G+    PD            DGF+   L
Sbjct: 447 GRPWGYY-TWPDNPW--------TDGFYMALL 469


>gi|260462689|ref|ZP_05810895.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259031595|gb|EEW32865.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 429

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 159/450 (35%), Gaps = 48/450 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  + R+   +   L        F      D+  +  IV   LR       +L 
Sbjct: 8   AAAIEVLEDIGRRHRPVADALKDWGLSHRFAG--GGDRAAIGNIVYDALRHKRSAGWLLG 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                ++                 + +   A                 ++    L+ +  
Sbjct: 66  EDTPRAIG-----------FGALLLEWGQTAQS--------LNGALDGDKFAPPLLGATE 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
            +   E+       A  + IP+W +   E  +G   V     A  +   +D+ V     D
Sbjct: 107 LQAIAERRLAHAPSAVRADIPDWCEPLFERAFGASWVE-EGAALATRPPLDIRVNTLQAD 165

Query: 186 IETWAHKLNAVM----------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 +L              +    I       ++ + P F +G + VQD  + I   
Sbjct: 166 RNKVLAELADTGAKPARIAPNGIRIAPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAAT 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G   ++ VLD CA  GGKT   +  + +  ++ A D  K RL  +   + R       
Sbjct: 226 LAGAGASMQVLDFCAGAGGKTLALSAQMGNTGQIFAHDAEKARLAPIFDRIRRSENRNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           ++   A         D VLVDAPC+ +GT RR PD  W      +      Q  +L    
Sbjct: 286 VVTKPAELAPLSGHMDVVLVDAPCTGSGTWRRRPDAKWRLTQRQLDARKGEQSAILDAAS 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE 410
            +VKPGG++V+  CS+  +++ E V      +   V +    L  +++   + A  +   
Sbjct: 346 IYVKPGGLLVYITCSVFPEENGEQVAAFRGRNSGFVPVDHRALWDSHFPGHEAAARIGAG 405

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G I ++P          SG DGF+  A+RR
Sbjct: 406 GDISLSP--------ALSGTDGFYVCAMRR 427


>gi|75676329|ref|YP_318750.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421199|gb|ABA05398.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi
           Nb-255]
          Length = 432

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 95/464 (20%), Positives = 160/464 (34%), Gaps = 57/464 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  ++  +  +RI     L        F      D+  +  +V   LR 
Sbjct: 1   MTPS--ARLSAAIEVIEAIDNQRIPAAKALKEWGTAHRFAG--SGDRAAISGLVYDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++D             L   L++               ++     A      R 
Sbjct: 57  QASSAWIMDDDTPR------ARLLGTLKL------------ERGIN-TDAIASLCDGGRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             + +    R+    +             P+W    L+  +G +R    +        +D
Sbjct: 98  APEPLTEGERQALASRSLGDAPAHIAGDYPQWLDVYLDEAFGDDRAAEAAAMACRAP-LD 156

Query: 180 LTVKFDIETW------AHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQD 227
           L +                L     P   + L+ +  +      I +   F +G   VQD
Sbjct: 157 LRINTLKAKRDKVLGSLQHLGVTATPWSPLGLRIMLGADARNPGIQAEEEFIKGAVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
             + I   L G      V+DLCA  GGKT     ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQIAALLSGARPGEQVIDLCAGAGGKTLTLAAMMQGRGRLIATDRDKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIEM---DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  ++      D      +   D VL+DAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNAEVRTPKGEDDPLSDIRASADLVLIDAPCTGTGTWRRNPDAKWRMRPGALDIRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L +  + VKPGG VV+  CS+  Q++   ++K +   P    + P  +A     
Sbjct: 337 KDQAEVLDRASALVKPGGRVVYITCSVLPQENSGQIRKFIGRHPDFSVIPPSPTASVLWD 396

Query: 402 DMAMAL-----SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                L     S EG +         +    +G DGFF   L +
Sbjct: 397 RTDDFLAAVYASDEGLL---------MTPRRTGTDGFFVSILTK 431


>gi|298529651|ref|ZP_07017054.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511087|gb|EFI34990.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 417

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 164/454 (36%), Gaps = 52/454 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    + R V+ +++   +R    L  +LD          +  RD+ L   +    LR+ 
Sbjct: 1   MPQASDPRAVALNVVLDALRPGRDLQMVLDRNLDP----EMDLRDRSLATELAYGYLRYK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
            R+D VL+  L S        ++ L+ ++  +I +L  + DYA V  AV   ++   +R 
Sbjct: 57  GRLDFVLNCFLKSP-AGLSGKIRVLMGLAAYEIFFLERIPDYAAVSRAVALTRKRFGSR- 114

Query: 120 FAKLVNSILRRVS-----------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
            + LVN++LR+             ++    +  ++     PEW  +  +  YG +     
Sbjct: 115 MSSLVNAVLRKCCRVDAFDPDFFRQDHPGEMLFLSRFYSCPEWVVKLWQKDYGTDMAREY 174

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQD 227
               +      + +    +      + V+   G   L       +  L          Q 
Sbjct: 175 LKQSLQKPAAGVRLAPGEDAGRLDEHYVLQRIGPSILLRDNYPGLEDLE--KNKKVVRQS 232

Query: 228 ASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
            +    +   G  +  S   D+CA  GGKT  +   G +V A D    RL  L+  L   
Sbjct: 233 FAGQKTLWELGMGDWKSPVWDMCAGRGGKTMLMSSQGLQVWASDNYLPRLAGLKKELLEQ 292

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +          KK    VLVDAPC+  G + R PD  W R   D++     Q++
Sbjct: 293 VQ--VQVFAAQGQSPPLKKSSGTVLVDAPCTGLGVLSRRPDTKWKRSPRDVLDFCRVQKE 350

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           LL    + +   G +++  C+L +Q+++E V   L+                        
Sbjct: 351 LLAAAANVLPSKGQLIYVTCTLSRQENQEQVTDFLKKHKDFE------------------ 392

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++      ++  G       FF   L+R
Sbjct: 393 -----CLQTYGTGADEDLGEF-----FFGARLQR 416


>gi|260222513|emb|CBA32151.1| Ribosomal RNA small subunit methyltransferase B [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 457

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 105/413 (25%), Positives = 180/413 (43%), Gaps = 32/413 (7%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD 105
           +  V+A+     R + R  A+   +     P    +L  L+   V    +    ++ +V+
Sbjct: 58  RGGVQALSFRAWRNMGRAKAIRAQLAKRPPPVAVDTLLCLVLALVWDTSHALYDEFTLVN 117

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYG 161
            AVE AK+       A  +N+ LRR  RE+         R       P W+ +R++  + 
Sbjct: 118 QAVECAKKTPSAAAQANFINACLRRFLREREALVTATNDRPEARWNHPAWWIKRVKEEHP 177

Query: 162 KERVLAISDACISPLY-IDLTVK-FDIETWAHKLNAVMLPT----GGIRLKELPESIVSL 215
           ++    + +A   P   + + V+      +  +L +  +      G +        + +L
Sbjct: 178 QDWQTILQNANRHPPMTLRVNVRKVQASEYHQQLKSAGIDVALESGSLLELTKAVPVSAL 237

Query: 216 PGFAEGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALD 270
           PGF+EG+  VQD +A +  +          +  +LD CAAPGGKTA L+    A+V AL+
Sbjct: 238 PGFSEGLVSVQDGAAQMAAKLLLAGVPAHGHPRILDACAAPGGKTAHLLELCDAEVLALE 297

Query: 271 VSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
           V  +R E++   L RL L A  +     D   +     FD VL+DAPC+++G +RRHPD+
Sbjct: 298 VDGQRAERIHQTLSRLGLTANVQTADAADTGTWWNGNPFDYVLLDAPCTASGIVRRHPDI 357

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            W R   D+++ A  Q+KLL    S +KPGG +++  CS+ + +  + V+  L S+   V
Sbjct: 358 RWLRRESDVLQLAMEQKKLLAALWSTLKPGGKLLYCTCSIFRAEGADQVKSFLESNKDAV 417

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            L        +S      ++                      DGFF     + 
Sbjct: 418 LLPSPGHLLPQSGQSGQDVADN---------------QHGDHDGFFYALFEKK 455


>gi|71905670|ref|YP_283257.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
           RCB]
 gi|71845291|gb|AAZ44787.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
           RCB]
          Length = 419

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 110/444 (24%), Positives = 180/444 (40%), Gaps = 56/444 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ + + V   +     LL           +    +  V+ +V  +LR   R D  L  +
Sbjct: 16  AARIDAAVFAGQSLADGLLAR---------VDPAARPAVQDLVYGSLRAYGRGDFFLGRL 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           L   L  ++  ++ LL VS+ ++     A + VVD AV  A     N  F  LVN++LR 
Sbjct: 67  LDKPLDVEE--VRALLLVSIYRLETRPDAAHTVVDQAVSAAGE-LANGRFRGLVNAVLRN 123

Query: 131 VSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK-F 184
             R++      L      +S  P+W+  +L+  Y  +    ++     P   + + V+  
Sbjct: 124 FLRQQEALVAALADDAVAVSQHPDWWLAQLQAAYPDDWQRIVAAGNAPPPMGLRVNVRRA 183

Query: 185 DIETWAHKLNAVML----PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
             + +  +L    +              P  + SL GFA G+  VQD  A +   L    
Sbjct: 184 SRDDYLARLTDAGISATAVGESGLALAKPVPVESLLGFAAGLLSVQDPGAQMAASLLDPE 243

Query: 241 NNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA- 298
               VLD CAAPGGKTA L   S   + ALD+   R  ++  NL RL L A  +   D  
Sbjct: 244 PGSRVLDACAAPGGKTAHLLERSDLDLLALDLKPSRCRRIEENLSRLGLTA-SVKAADCV 302

Query: 299 --FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
               +   + FDAVL D PC+++G +RR+PD  W R   DI   A  Q ++L      V+
Sbjct: 303 KLDTWWDGRPFDAVLADVPCTASGVVRRNPDTKWLRREADIFSFAKTQARILDALWQVVR 362

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +++  CS+   ++   + + L   P                            ++ 
Sbjct: 363 PGGKLLYVTCSVFPTENGVQIARFLERQPEARRC--------------------HEEQLL 402

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P         ++  DGF+   L +
Sbjct: 403 P---------TADHDGFYYCLLEK 417


>gi|120435407|ref|YP_861093.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii
           KT0803]
 gi|117577557|emb|CAL66026.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii
           KT0803]
          Length = 403

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 168/454 (37%), Gaps = 66/454 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L+ +  +      ++              RD+  +       +R+ 
Sbjct: 1   MRLHRNLVFATVDALAEIFNEGNYADKVIAKTLKRDKRWG--SRDRSFIAETTYDIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + +  +     R+      + R+                   V    R      +
Sbjct: 59  RLYAEIAE--VKEPFKRED-----IFRMLA-----------------VWCVLRGVTIPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            +   +  RR+     EL +       +P+W  E  E   G++       A      + L
Sbjct: 95  PQFEKTPERRIKGRFDELSRIRKFRESVPDWMDELGEKELGEKVWTKEIHALNEQAPVIL 154

Query: 181 ---TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
               +K + +  A KL+   + T G+R            ++     F +G++ VQDA++ 
Sbjct: 155 RTNNLKTNPKELAAKLSEEGIETSGVRNYPEALELKERANVFKTKAFQDGLFEVQDANSQ 214

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
              +L      + V+D CA  GGKT  L   + +  ++ ALD+   +L++L+    R   
Sbjct: 215 RVAELLDVKPGMRVVDTCAGAGGKTLHLAALMENKGQIIALDIYGNKLKELKRRAKRAGA 274

Query: 289 YAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  +   +D+     K     D VL+DAPCS  G + R+PD  W    D + K    Q +
Sbjct: 275 HNVETRSIDSTKVIKKLYNSADRVLIDAPCSGLGVLSRNPDAKWKLQPDFLEKIKNTQLE 334

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L +    +K GG +V++ CS+   ++E+ VQK L++              +K +     
Sbjct: 335 ILEKYSRILKEGGKMVYATCSILPSENEKQVQKFLKTESGK---------DFKLLREKKL 385

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           LS E                 SG DGF+   L++
Sbjct: 386 LSSE-----------------SGYDGFYMALLQK 402


>gi|303240317|ref|ZP_07326836.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592227|gb|EFL61956.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2]
          Length = 471

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 89/483 (18%), Positives = 181/483 (37%), Gaps = 60/483 (12%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K  +  R ++  +L+ +     +   +L   +       L   D+I + ++V  TLR   
Sbjct: 5   KKELRIREIALEILNDITENGSNSNLVLSNYFNKY---TLDINDEIFITSLVLGTLRLKV 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV---------------------AD 100
            I   ++ V      +    +  +LR+ V +  Y DV                       
Sbjct: 62  SIQYAIE-VPKKIAKKISPCIMNILRLGVYEHFYGDVIPNPDESFTSYTGNEPYRIEKPK 120

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI-------SIIPEWFK 153
              ++  V  A++    R  A +V ++L R+     +     +            P    
Sbjct: 121 CKYINEYVRIAEKC-GQRSGALVVEAVLSRLCGLLWQYFNDRSFEAELLSSKYSFPIHLV 179

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVK---------FDIETWAHKLNAVMLPTGGIR 204
           ++  N YG +    +     +P  + +             D+             T    
Sbjct: 180 DKWLNNYGSDFTEDLLKKLNTPAKLCIRPNSLKISKNELMDVLINEEIDFEEGFITDEAL 239

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP-GGKTAQL---I 260
           L    + + +L  F +G + VQD S+ +  ++    +  +VL++C    G KT      +
Sbjct: 240 LINSTQPLDTLESFKKGYYQVQDESSILVSKILNPRSGENVLEVCVGTQGDKTTHCAQLM 299

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--FDYCPKKLFDAVLVDAPCSS 318
            +  K+  +D++ ++L   R N  R      D++E D   ++     +FD VLV AP   
Sbjct: 300 NNIGKILTVDINPQKLCLTRQNCCRFGATIVDLMEYDCLVYNKDWNNVFDKVLVSAPSYE 359

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G IRR+P+  ++ D  ++ K    Q  LL    +++K GG++V+   + + +++   + 
Sbjct: 360 YGIIRRNPEKKYSSDYYNLSKLVDIQSNLLRNSSNYLKCGGVLVYYTNTFEVEENLLSIN 419

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             L ++     L  +     +  D       +G+++I P+           MDG F   +
Sbjct: 420 CFLENNK-DFVLDEIVEVDTRKFDQPPQ---QGFLQIFPNACL--------MDGCFIAKM 467

Query: 439 RRL 441
           RR 
Sbjct: 468 RRK 470


>gi|254172289|ref|ZP_04878965.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
 gi|214034185|gb|EEB75011.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
          Length = 443

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 165/410 (40%), Gaps = 36/410 (8%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           +  I     R L  ID V++ ++  S       L+  LRV+V ++      +   +    
Sbjct: 48  LTGIFYSIQRRLGLIDEVIEELVGVSPLILDPWLRATLRVAV-EVAVFRNPNEKTLQHLK 106

Query: 109 EQAKRDKENRH-----FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
             AK      H     +   +   +     +     +R+    + PEWF  +       E
Sbjct: 107 GLAKFLSGKTHPYVGYYYYELLPRIINYVPKLDSEEKRLKWEYLFPEWFIAK-MRGLLGE 165

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL-------P 216
               +  A    L + L V     +     N +          E  E+++ +        
Sbjct: 166 EAEELLKALNETLPVSLRVNRLKASVEDVENYLKRKNLRFERSERVETVIRVLDPFNPGK 225

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
              +G+   Q+ ++ +   +       +V+DL AAPGGKTA +   + +  K+ A D+  
Sbjct: 226 LMEKGLALPQEEASVVASLILSPEPGETVVDLAAAPGGKTAHMAELMGNEGKIYAFDIDS 285

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLW 330
            R++++R  L    +   ++ ++D         +++ D VL+DAPC+S GTI ++P++ W
Sbjct: 286 ERIKRMRQILRWAGVEIAEVRKLDGRKAPEVLGEEIADRVLLDAPCTSDGTIAKNPELRW 345

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                +I K    Q++L+      +KPGG +++S CS+  +++EEVV+  L        L
Sbjct: 346 RLREKNIPKVVALQKELIESAWRLLKPGGRLLYSTCSMLPEENEEVVRWFLSRH-DDARL 404

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           VPL+  Y +           G +R  P              GFF   + +
Sbjct: 405 VPLSGPYDEGFLP-------GTMRAWPH--------RHKTIGFFYALIEK 439


>gi|91976745|ref|YP_569404.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5]
 gi|91683201|gb|ABE39503.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5]
          Length = 434

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 158/459 (34%), Gaps = 47/459 (10%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  L++ +  +RI     L        +      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIDLIATIDGQRIPAAKALKEWGTAHRYAG--SGDRAAIAGLVWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++D     S       +  +L+V                      A      R 
Sbjct: 57  RASSAFIMDDDSARS------RVLGMLKV-------------ERGMTPDAIAALCDGGRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             + ++         +             PEW        +G +RV   + A  S   +D
Sbjct: 98  SPQPLSDAEHAALSGRTLDGAPPHVAGDYPEWLDGAFAEMFGDDRVAEAT-AMASRAPLD 156

Query: 180 LTVKFDIETWAH------KLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQD 227
           L V                L A   P   + L+    +    PG      F +G   VQD
Sbjct: 157 LRVNTLRAKREKVLASLAHLGASETPWSPLGLRIELGADARNPGVQAEQDFIKGAVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +   L        V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAALLSAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDSDKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  DI                 D VLVDAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNCDIRAPKGPGDTLSDIHASADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L +  + VKPGG + +  CS+   ++   V+  +   P      P   A     
Sbjct: 337 KDQAEVLARAATLVKPGGRIAYVTCSVLPAENGGQVKAFVAGHPDFAVTPPAEVAAALWD 396

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                L+     R TP+ L  +  + +G DGFF   LR+
Sbjct: 397 KAEDFLAAT---RTTPEGLL-MTPLRTGTDGFFVSVLRK 431


>gi|306821088|ref|ZP_07454704.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550781|gb|EFM38756.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 436

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 194/463 (41%), Gaps = 61/463 (13%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R ++ +++  V   +     L++  +  S    L   ++  +  +    L  +  +D
Sbjct: 1   MNLRNITYNIIFDVKHNKKYSNILINEVFTKSK---LKDEEKNFITYLSYGVLGNIYFLD 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123
             +      S  +     + +L +++ ++++++   +YA V+ +V   K+   +      
Sbjct: 58  YFIRKYSDISFSKISNKAKVILEMALFELIFMNSSQNYATVNESVALCKKV--DFRAKNF 115

Query: 124 VNSILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKERVLAISDA 171
           VN++LR++S      L+              +    I ++  +RL   YG +    +  +
Sbjct: 116 VNAVLRKISSSNPSNLRNYKFDDIKDKSERLSVKFSISKYISDRLIENYGFDFAYELMLS 175

Query: 172 CISPLYIDLT---VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGV 222
                 I +    +K D  T+ + L+   L          I   +  ++I +L  + +G+
Sbjct: 176 MSKTPEIFIRGNLIKTDFNTFKNLLDENKLCYEIIDEKNMIFSLKNLKNIANLNIYRDGL 235

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279
             +QD S+ + V   G   N +VLD+CAAPGGK+  +   + +   + ++D+S+ +L+ L
Sbjct: 236 ISIQDYSSMLCVIASGVKENQTVLDICAAPGGKSIFMSQIMKNKGSILSMDISENKLKLL 295

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
                RL +        DA  Y    K+ FD VL D PCS  G +RR P++ + ++ D+I
Sbjct: 296 DEQCKRLGIDIITTKVNDATIYDESYKEKFDVVLADVPCSGIGILRRKPEIRY-KNADEI 354

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q+ +L     +VK  G +++S C+L K++++ +++  ++++             
Sbjct: 355 ESLPEIQKTILENSSKYVKESGKLIYSTCTLGKEENQNIIENFIKNNTDFKI-------- 406

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                  ++        DGF+   + R
Sbjct: 407 --------------------SYQKEYYPNIDNTDGFYVCVMDR 429


>gi|257066168|ref|YP_003152424.1| Fmu (Sun) domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798048|gb|ACV28703.1| Fmu (Sun) domain protein [Anaerococcus prevotii DSM 20548]
          Length = 430

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 103/455 (22%), Positives = 185/455 (40%), Gaps = 55/455 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  + L  ++ +       ++                     ++   L     ID ++ 
Sbjct: 5   ELILNSLVRIICEDKKSNEEINYLEKRVGNL-------PYATKVIYGVLENKIYIDYMIG 57

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +    L +   ++  +L + +  I +L+  DYA VD  VE  KR  +NR  +  VN+IL
Sbjct: 58  KLSKIKLKKIHKNVLTILEIGIYNIHFLETKDYATVDKLVELTKR--KNRRSSGFVNAIL 115

Query: 129 RRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           R   R++ E+ +          +    +PE     + + YG +          +   + +
Sbjct: 116 RNFIRDEKEIAKIKISDDIKSLSVRYSMPEEITRYIFDNYGMDYTKDFLRYSNNEAVLSI 175

Query: 181 TVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231
            +     D +    KL A        +      L + P  +V+   F EG++ +Q  ++ 
Sbjct: 176 RINRLKTDKDNLIKKLKAKGFEIEVSKISENALLVKNPSGLVATSEFKEGLFTIQQEASM 235

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
             V++     +  +LDLCAAPG KT+       +  K+ A D+SK +L  +R N++RL L
Sbjct: 236 KTVEVLDPQKDSKILDLCAAPGTKTSYLAEYTRNSGKIIANDISKNKLNLIRENIERLGL 295

Query: 289 YAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
              ++   D   +    ++ FD VLVDAPCS  G + R P++ + R   DI   A  QRK
Sbjct: 296 SNIELDSFDASVYRSDFEEKFDYVLVDAPCSGLGVMARKPEIRYNRTISDIKVLAELQRK 355

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L   I ++KP GI+V+S C+L   ++ +     L++      L  L     K ++    
Sbjct: 356 ILANAIRYLKPAGILVYSTCTLGNIENLDN-YNFLKA---DERLTSLEIDGKKYLEFVSF 411

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           L                       DGFF    ++ 
Sbjct: 412 LDK--------------------TDGFFISKFKKK 426


>gi|46198807|ref|YP_004474.1| 16S rRNA m(5)C 967 methyltransferase [Thermus thermophilus HB27]
 gi|46196430|gb|AAS80847.1| 16S rRNA m(5)C 967 methyltransferase [Thermus thermophilus HB27]
          Length = 398

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 105/441 (23%), Positives = 179/441 (40%), Gaps = 47/441 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M++G   R ++  +L  V R       LLD     + +    +RD+     +V   LR L
Sbjct: 1   MRAGTP-RALAVAVLLEVDRGGR-AQLLLDRALRRAPW---PERDRAYATFLVYGALRRL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D +L  +L          ++ +LR+   + L     D+A V   VE+AKR       
Sbjct: 56  RLLDHLLAPLLPRP-EGLPPEVRWILRLGALEWL-EGKPDHARVSPWVEEAKRRY--PGL 111

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           A LVN++LRR++  +     R++    +P+W  E    F+G       ++    P  + +
Sbjct: 112 AGLVNAVLRRLAPREAPECVRLS----LPDWLCEAWRGFFGDVA---FAEGFNEPAPLFV 164

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T   +++     +    L  G                F       Q+ ++    +L    
Sbjct: 165 TAYREVDLRPGPVPGSYLWEGPKT------------DFPALGLQPQNPASLFAAKLLEAR 212

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLC   G K   L   GA+V + D++ RR E       RL L+       D   
Sbjct: 213 PGERVLDLCGGAGLKAFYLAAQGAEVVSYDLNPRRQEAGARTARRLGLW-VHYRTQDLTR 271

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
             P++    VL+DAPC+ TGT R HP++ +    +D  + A  Q +LL       + GG+
Sbjct: 272 PVPERAK-KVLLDAPCTGTGTFRAHPELRYRLSPEDPARMAALQLQLLETAAQATEEGGV 330

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L +++ E VV+  L   P              +  + + + P G         
Sbjct: 331 LVYSVCTLTEEEGEGVVRAFLARHPEFRPEPVQPPFPVLARGLGVYVDPRG--------- 381

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                   G+DGF+   LR++
Sbjct: 382 --------GLDGFYYAKLRKV 394


>gi|257791459|ref|YP_003182065.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243]
 gi|257475356|gb|ACV55676.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243]
          Length = 473

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 163/477 (34%), Gaps = 64/477 (13%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                ARL +  ++  V  +      ++      S    LS  D+     +    +    
Sbjct: 25  SKASPARLAALDVVRAVRERDAFAQDVIGTRIDRS---DLSSEDRAFATKLALGVVSATG 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +D ++D  L +     K  ++  LRVS  +I++L    +A VD  VE  +        +
Sbjct: 82  TLDEIIDRALNAP-SDVKPDVRDALRVSTYEIIFLGKTPHAAVDQGVELVRSF--AMSAS 138

Query: 122 KLVNSILRRVSREKIELLQRIAGI--------SIIPEWFKERLENFYGKERVLAISDACI 173
            L N++LR++   +                     P W   +L    G +  L    A  
Sbjct: 139 GLANAVLRKIVLMRQAFPFGDPMRDPEALARLHAFPLWLARKLIVDLGPQEALDFMRASN 198

Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPG--------- 217
               + + V       E      + +      + +          ++             
Sbjct: 199 EQAPLFIAVNAAKTSDEALVKAFDKLDEGLDPVSVDGVSVAGCYRVLDTRALLLPEVKRM 258

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNL-SVLDLCAAPGGKTAQLIVSGAKVTA-------L 269
           F++G   V DA++ +            S+L++ A    KT  L     +          L
Sbjct: 259 FSQGKILVTDAASQLVAASVLPERKPASLLEVGAGRATKTILLQSDATRAYGSQLVLSTL 318

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHP 326
           D    +   L    +R      +    DA +       + FD V +DAPCS  GT+RRHP
Sbjct: 319 DNHAFKTRLLLERAERYGAEVAEAFTGDALELDAVVGDRAFDEVFIDAPCSGLGTLRRHP 378

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSP 385
           ++ W     DIV+ A  Q  +L      V PGG + ++ C++ ++++  VV+  L   + 
Sbjct: 379 EIRWRIKPADIVEFARVQLGMLQAAAPHVAPGGALAYATCTVTREENNGVVKAFLESEAG 438

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +L P+N     +             R+ P             D  FAV   R+ 
Sbjct: 439 AGFKLAPVNGRSCVAT------------RLAPGSP----------DAHFAVRFERIA 473


>gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus
           abyssi GE5]
 gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
          Length = 449

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 92/415 (22%), Positives = 163/415 (39%), Gaps = 42/415 (10%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           +  I    ++    ID  +  ++  +       L+  LRV+V   L+ +      +    
Sbjct: 53  LTMIFYDIMKKQGLIDRAIQDIVGVNPLILDPWLRAALRVAVDIFLFHE-PSSQTIKNLR 111

Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFY 160
              K              +    + ++I   +              + P WF ER+    
Sbjct: 112 W--KGSDFISSRTHPYVGMYFWDTIDRIMQYKPNPRNELEELEWKYLAPAWFIERVRKIL 169

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML---------PTGGIRLKELPES 211
           G E             +I + V          +  +               I   + P +
Sbjct: 170 GNETEEFFRAVNERQEWISVRVNTLKANVEEVIEELRNDGVEVVRSERVPTILKIKGPYN 229

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268
             S   F +G   VQ+ ++++   +        ++DL AAPGGKT  L   + +  K+ A
Sbjct: 230 FDSSKAFNKGKIIVQEEASAVASLILNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYA 289

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRH 325
            D+ K R+++L+  ++R+ +     I  D         +++ D VL+DAPC+S+GTI ++
Sbjct: 290 FDIDKTRMKRLKEFVNRMGIKIVKPIIKDGRKAPEILGEEIADRVLLDAPCTSSGTIGKN 349

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           P++ W      I + A  QR+LL      VKPGG+++++ CSL  +++EE V+  L +  
Sbjct: 350 PELRWRLRESKIKEMAQLQRELLESAAKLVKPGGLLLYTTCSLFTEENEENVKWFLNNH- 408

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +LV LNS Y            EG +R  P              GFF   LR+
Sbjct: 409 QEFKLVHLNSPYDPGF-------LEGTMRAWPH--------RHSTIGFFYALLRK 448


>gi|226323830|ref|ZP_03799348.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758]
 gi|225208014|gb|EEG90368.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758]
          Length = 357

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 155/384 (40%), Gaps = 51/384 (13%)

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
            K  ++ +LR +V QI Y+D V D A  + AV  A R K  ++    VN +LR ++R   
Sbjct: 1   MKPVIRNILRCAVYQIKYMDQVPDSAACNEAVNLAIR-KGFKNLRGFVNGVLRNIARNID 59

Query: 137 ELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IE 187
           ++          +    +P+W        YG+E+   I +         + +  +    E
Sbjct: 60  KIAYPENTEEFLSIKYSMPQWIIRMWVRDYGEEKTKYILEGFYKERATTIRINGNATTKE 119

Query: 188 TWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
               +L    +      L          + + ++P F EG + VQDA++ +  +  G   
Sbjct: 120 ELIRELTGEGIQVKEHPLLASALLISGYDYLAAIPAFREGKFQVQDAASIMVAEQAGIKE 179

Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297
              +LD+CAAPGGK             V A D+++ ++E +R N+ R+       ++ D 
Sbjct: 180 GDYILDVCAAPGGKALHAAQILNGTGMVEARDLTEMKVELIRENISRMGFENIRAVQQDA 239

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             FD   ++  D ++ D PCS  G + +  D+ +  + +   + A  QR++L     +VK
Sbjct: 240 TCFDADSEEKADVLIADLPCSGLGVLAKKTDLKYKMNPETETEVAALQREILDAVCRYVK 299

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           P G +++S C++ + ++EE         P                        E   +I 
Sbjct: 300 PEGTLMYSTCTISRTENEENAGWFAEKHPE--------------------FDLEWEKQIF 339

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P  +          DGF+     R
Sbjct: 340 PSDI---------TDGFYIAKFIR 354


>gi|227872150|ref|ZP_03990520.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus
           F0268]
 gi|227842008|gb|EEJ52268.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus
           F0268]
          Length = 449

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 101/443 (22%), Positives = 181/443 (40%), Gaps = 67/443 (15%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V  +   +   L   + D  +  L  R++  +    +  L    ++D V+       L +
Sbjct: 56  VFYEGEFIHLALRKLFSD--YPGLGNREKAFLTRSSHGILERYLQLDYVISLYSSVKLKK 113

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
            K  +   LR+++ Q+L++D + ++A+VD AV+  K+ K  +     VN++LR++  EK 
Sbjct: 114 LKPVVLLSLRIAIYQLLFMDKIPEHAIVDEAVKSIKKRKL-QGLVPFVNAVLRKIVGEKE 172

Query: 137 ELLQRIAGIS-------IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
           E+ +++A +         +P    E     YG+ER +A+++A                  
Sbjct: 173 EIKKKLASLPKEDAVSLCLPPDILEVFLKDYGRERTIAMAEAF----------------- 215

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
                   +       + +  +I+    F  G   +QD S+    +         VLD C
Sbjct: 216 LQSDGGFYIRNESGEGERVSGNILEEERFRSGAVTIQDFSSQAVGKSLKLKEGALVLDCC 275

Query: 250 AAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           +APGGK   +        KV A D  K +L  +  N  RL L   +I   DA     + +
Sbjct: 276 SAPGGKACHIASLLKGSGKVYARDAQKDKLRYIVENQKRLGLENMEIEHWDARVLDERFI 335

Query: 307 F------DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                  DAVL DAPCS  G I R PD+      + + +    QR++L    ++VK GG 
Sbjct: 336 QEGEGILDAVLCDAPCSGLGVIGRKPDIRLHFTKEALEELQSLQREILSTVQAYVKKGGQ 395

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++S CSL  +++EE    +L++ P  +                  +  E ++   P   
Sbjct: 396 LLYSTCSLSFKENEENRDYILQNFPFTL------------------IKEEKFM---PGKP 434

Query: 421 EKIDGVSSGMDGFFAVALRRLIQ 443
                     DGF+    +R  +
Sbjct: 435 ---------SDGFYLALFQRKAE 448


>gi|146340153|ref|YP_001205201.1| putative SUN-family protein, RNA methyltransferase [Bradyrhizobium
           sp. ORS278]
 gi|146192959|emb|CAL76966.1| putative SUN-family protein, RNA methyltransferase [Bradyrhizobium
           sp. ORS278]
          Length = 432

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 99/464 (21%), Positives = 162/464 (34%), Gaps = 57/464 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  ++  +  +R      L        F      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIDIIETIEAERAPAAKALKDWGTSHRFAG--AGDRAAIAGLVWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 V++             +  +L++       LDV            A     NR 
Sbjct: 57  RASSAYVMENDTAR------ARVLGMLKL----ERGLDVPT---------IAAMCDGNRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
               + +   R    +             P+W    L   +G +RV   + A  S   +D
Sbjct: 98  APSPLTAQEERALASRTTEGAPPPVSGDYPDWLDPYLAAVFGDDRVAEAT-AMASRAPLD 156

Query: 180 LTVKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQD 227
           L V                L AV  P   + L+    +    PG      F +G   VQD
Sbjct: 157 LRVNALKAKREKVQASLKHLGAVPTPWSPLGLRITLGADARNPGVHAEEDFIKGAIEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +            V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAALFTAAKPGEQVIDLCAGAGGKTLALAAMMGGKGRLIATDADKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  +I             K   D V++DAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNAEIRTPKGDADPLADIKSSADLVVIDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW--- 398
             Q ++L +    VKPGG + +  CS+ + ++ + V+  +          P  +A     
Sbjct: 337 KDQAEVLERAAGLVKPGGRIAYITCSVLQPENGDQVRAFVARHKEFAVQPPDQTATVLWD 396

Query: 399 --KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    A   +PEGW+         +    +G DGFF   L++
Sbjct: 397 KSEPFAEAALKTPEGWL---------MTPRRTGTDGFFVSVLKK 431


>gi|240849848|ref|YP_002971236.1| SUN family protein [Bartonella grahamii as4aup]
 gi|240266971|gb|ACS50559.1| SUN family protein [Bartonella grahamii as4aup]
          Length = 428

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 159/450 (35%), Gaps = 47/450 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  K   +   L        F      D+  +  IV   LR    +   ++
Sbjct: 8   QAAIDVLKEIEMKHRPVGEALKDWGLSHRFAG--AGDRAAIGTIVYDVLRRRYSLQWRME 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                    +      LL                   + +EQ   +     FA  +    
Sbjct: 66  SD-----DIRDIVFGALLDSG---------------KMTLEQIDSELAEDRFAPQLLGAK 105

Query: 129 RRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
           +R S +  +L+     I   IP+W +  L   +G +  +  + A  +   +DL V     
Sbjct: 106 QRKSWQGQQLVDAPDYIRGDIPQWCQAHLRPLFG-DNWITEAAALATRPSLDLRVNNLKA 164

Query: 185 DIETWAHKLNAVMLPTGGIR----------LKELPESIVSLPGFAEGVWWVQDASASIPV 234
             E    +L    L +                    ++   P F +G + +QD  + I  
Sbjct: 165 TPEKVLKELAKTKLKSLPWFGQALRIAPIEKFNRHPNVQVEPAFQKGHFEIQDLGSQIVA 224

Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
            L     ++ VLD CA  GGKT   A  + +  ++ A D  K RL  +   L R  +   
Sbjct: 225 HLVEARESMQVLDYCAGAGGKTLALASDMNNRGQIYAYDSDKARLAPIFDRLRRAGVRNV 284

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                           D VL+DAPCS TGT RR PD  W    + + +    QR +L + 
Sbjct: 285 QTRVQREELKPLTGQMDRVLLDAPCSGTGTWRRRPDAKWRLTLEQVKQRQTEQRSILNEA 344

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           I+++KP G +V+  CSL   ++EE + + L+         P++         +       
Sbjct: 345 IAYLKPNGRLVYITCSLFTDENEEQISRFLQQHSHFA---PIDMPALWQKHFSFFPVQP- 400

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +  +    +   ++  DGFF   L++ 
Sbjct: 401 ---VFSNYGLTLSPATTQTDGFFLSVLQKK 427


>gi|330826252|ref|YP_004389555.1| Fmu (Sun) domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|329311624|gb|AEB86039.1| Fmu (Sun) domain protein [Alicycliphilus denitrificans K601]
          Length = 439

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 154/454 (33%), Gaps = 45/454 (9%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+   +        ++   + D     L  R++  +       LR  P  + +   
Sbjct: 9   ACAELVRLTLTFEHPADAVVSRYFRDHR--ELGPRERATLAETAYAVLRRKPLFEQLARS 66

Query: 70  VLISSLPRKKYSLQQLLRVSVA-QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                        ++L  +  A Q+                   +          +++  
Sbjct: 67  -------GSGPKERRLAILGFASQLDEQARRADPSARRGPRDFLKSALTAQEKDWLDACD 119

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
                E +E          +P+W    L      +   A++ +      +DL V      
Sbjct: 120 GVREDELLEPQ-----RHNLPQWLAAPL-KAQLGDEFWALAASLQEQAPLDLRVNTLQAK 173

Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            E    +L            +      +   ++  L  FA G   VQD  + +   L   
Sbjct: 174 REDMRKELAQAGVQAAPTPYSPWGLRVQGKPALSRLDAFARGALEVQDEGSQLLALLLDA 233

Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292
                V+D CA  GGKT  +   + +  ++ A DVS  RL+ L+  L R  L        
Sbjct: 234 KRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARSGLSNVHPAAL 293

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             E D          D VLVDAPCS  GT+RR+PD+ W +    + + A  Q  +L    
Sbjct: 294 AHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQGPQAVQELAAKQTAILESAA 353

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG- 411
             VK GG +V++ CS+  +++E + +    + P    L          ++ A  L   G 
Sbjct: 354 RLVKSGGRLVYATCSMLPEENEAIAEAFGAAHPDFAPLAAGELLAQLKVEQAAGLCSGGD 413

Query: 412 ----WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               ++R+ P             DGFFA   ++ 
Sbjct: 414 DGMRYLRLWPH--------RHQTDGFFAAVWQKK 439


>gi|86142818|ref|ZP_01061257.1| putative sun protein [Leeuwenhoekiella blandensis MED217]
 gi|85830850|gb|EAQ49308.1| putative sun protein [Leeuwenhoekiella blandensis MED217]
          Length = 405

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 158/457 (34%), Gaps = 67/457 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N        L  +  +      ++  +           RD+  +       +R+ 
Sbjct: 1   MRLHRNLVFAVIDGLIEIFNEGGYADKVIAKQLKRDKRWG--SRDRSFIAETTYDIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + D  +     RK        R+                   V    R  +   +
Sbjct: 59  RLYAEIAD--VKEPFERKDLW-----RLFA-----------------VWCTLRGIKLPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            +   +  RR+     EL         +P+W  + L      ++  A   A      + L
Sbjct: 95  PQFEETPTRRIKGRFDELSNTRKFRESVPDWL-DELGQQELGDKWDAELAALNKQAPVVL 153

Query: 181 TVK---FDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASAS 231
            V     DI      L      T  I+        +   ++ +   F  G++ VQDAS+ 
Sbjct: 154 RVNRLKSDIGALQTALAEEGHETENIKPYKDALQLQERANVFTTEAFKNGLFEVQDASSQ 213

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +          + V+D CA  GGKT      + +  ++ ALD+   +L++L+    R   
Sbjct: 214 LVAPYLDVEPGMRVVDTCAGAGGKTLHLAAQMDNKGQLIALDIYGNKLKELKRRARRAGA 273

Query: 289 YAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  +   +D+     K     D VL+DAPC+  G + R+PD  W    D + K    Q+ 
Sbjct: 274 FNIETRVIDSTKVIKKLHNSADRVLIDAPCTGLGVLSRNPDAKWKLQPDFVEKIQATQQS 333

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      VKPGG +V++ CS+   +++E ++K L++                  +    
Sbjct: 334 ILKDYSKIVKPGGKMVYATCSILPSENQEQIKKFLKT------------------EEGSD 375

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            S E          + +    SG DGF+   + +  +
Sbjct: 376 FSIEK--------QKTVLSSESGYDGFYMCLMVKKDK 404


>gi|163867476|ref|YP_001608675.1| SUN-family protein [Bartonella tribocorum CIP 105476]
 gi|161017122|emb|CAK00680.1| SUN-family protein [Bartonella tribocorum CIP 105476]
          Length = 428

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 156/449 (34%), Gaps = 45/449 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +   +   L        F   S  D+  +  IV   LR    +   ++
Sbjct: 8   QAAIDVLKEIEMRHRPVGEALKDWGLSHRFAGAS--DRAAIGTIVYDVLRRRYSLQWRME 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 +  +      LL         + +            A +  E++          
Sbjct: 66  S-----VDIRDIVFATLLDTG-----KMTLEQIDNALEGDRFAPQLLEDKQRKSW----- 110

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
               + +  +         IP+W +  L   +G   ++    A  +   +DL V      
Sbjct: 111 ----QRRQLVDAPDYIRGDIPQWCQAHLCPLFGDNWIIEA-AALATRPSLDLRVNNLKAT 165

Query: 186 IETWAHKLNAVMLPTGGIRL----------KELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            E    +L    L +                +   ++   P F +G + +QD  + I   
Sbjct: 166 PEKVLKELAKTKLQSLPWFRQALRVAPIEKFDRHPNVQVEPAFQKGHFEIQDLGSQIVAH 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L     ++ VLD CA  GGKT   A  + +  ++ A D  K RL  +   L R  +    
Sbjct: 226 LVEAQESMQVLDYCAGAGGKTLALASDMNNRGQIYAYDSDKARLAPIFDRLRRAGVRNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                      +   D VL+DAPCS TGT RR PD  W    + + +    QR +L + I
Sbjct: 286 TRVQKEELKSLRGQMDRVLLDAPCSGTGTWRRRPDAKWRLTLEQVKQRQTEQRAILNESI 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++KP G +V+  CSL   ++EE +   L+        + + + + K    +        
Sbjct: 346 EYLKPNGRLVYITCSLFADENEEQISHFLQQH-SHFYPIDMQALWQKHFSFSPVQP---- 400

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +    +   ++  DGFF   L++ 
Sbjct: 401 --VFSNYGLTLSPATTQTDGFFLSVLQKK 427


>gi|124266306|ref|YP_001020310.1| NOL1/NOP2/Sun family protein [Methylibium petroleiphilum PM1]
 gi|124259081|gb|ABM94075.1| NOL1/NOP2/Sun family protein [Methylibium petroleiphilum PM1]
          Length = 419

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 95/448 (21%), Positives = 157/448 (35%), Gaps = 54/448 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++S LL  V++       ++   + +     L  R++  +   V   LR       +   
Sbjct: 9   LASELLRAVLKLDAPADGVVSAYFREHR--SLGHRERHALAETVYAVLRRRLLFQHLAQS 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                   +    ++L+ +   Q     +  +A        A+                 
Sbjct: 67  -------GQGSMERRLVLLG-WQGGDGILQAHASPPEREWLARA---------------- 102

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDI 186
              R              +P+W    L+   G+    A++ +  +   +DL V   +   
Sbjct: 103 ---RAIDVDTLPEKLRHNLPDWLATPLKGVLGESEFWALAASLNAAAPLDLRVNALQAKR 159

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASASIPVQLFGTL 240
           E  A  L    +  G          I        L  F  G   VQD  + +   L    
Sbjct: 160 EDVAAALAEAGIEAGATPHSPWGLRIRGKPALNKLELFKRGDVEVQDEGSQLLALLTEAR 219

Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
               V+D CA  GGKT     ++ +  ++ A DVS  RL+ L+  L R  L         
Sbjct: 220 RGEMVVDFCAGAGGKTLALGAMMRNTGRLYAFDVSGHRLDALKPRLARSGLSNVYPVQIA 279

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ W +    I +    Q  +L     
Sbjct: 280 HERDDRIKRLSGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPKAIEELRVKQAAILASAAR 339

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +KPGG +V++ CSL   ++E + +      P    L          +  A  L  +G++
Sbjct: 340 LLKPGGRLVYATCSLLASENEAIAEAFSTEHPGFEALAVQPVLECCKVGDAGTLVQDGFL 399

Query: 414 RITPDMLEKIDGVSSGMDGFFAVA-LRR 440
           R+ P             DGFFA   L++
Sbjct: 400 RLWPH--------RHATDGFFAAIWLKK 419


>gi|239833569|ref|ZP_04681897.1| Fmu (Sun) domain-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239821632|gb|EEQ93201.1| Fmu (Sun) domain-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 465

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 149/451 (33%), Gaps = 50/451 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +       + +L        F      D+ ++  IV   LR    I     
Sbjct: 44  QAAIEVLDQIEAGTRPASDVLKDWGATHRFAG--AGDRAVIGNIVYDALRRKLSIAW--- 98

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
                   R      + L      +L    +D+A    V    + A    E        +
Sbjct: 99  --------RMDADDARALAFGA--LLADGGMDIAGIDTVLDGDKFAPETLEQPRRIAWES 148

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
             +                 + IPEW    LE  +G  R +    A  +   +DL V   
Sbjct: 149 RDIAEAPSHV---------QADIPEWCASSLEELFG-ARWMDEGRALATRPPVDLRVNSL 198

Query: 186 IETWAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASI 232
                  L A+                    E++   P       F +G + VQD  + +
Sbjct: 199 KAKPEQTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQL 258

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  + 
Sbjct: 259 AALFAGAKPGQQVLDYCAGAGGKTLALAAAMQNSGQIHAYDAERARLSPMHERLQRAGVR 318

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              +              D VL DAPC+ +GT RR PD  W  +   + +    QR++L 
Sbjct: 319 NTQVHGNLDALDPLTGQMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQREVLE 378

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
               +VK GG + +  CSL  +++   V + LR +    E+ P         D       
Sbjct: 379 SAKHYVKQGGRLAYVTCSLFAEENTRQVARFLRDNADFTEVAPQPLWDAVVADAGDIKP- 437

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                + P+       +S+  DGF+   L+R
Sbjct: 438 -----VFPEYGAVFSPLSTDTDGFYVSILQR 463


>gi|194290601|ref|YP_002006508.1| ribosomal RNA small subunit methyltransferase b (rRNA
           (cytosine-c(5)-)-methyltransferase) (16S rRNA m5c967
           methyltransferase) [Cupriavidus taiwanensis LMG 19424]
 gi|193224436|emb|CAQ70447.1| Ribosomal RNA small subunit methyltransferase B (rRNA
           (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
           methyltransferase) [Cupriavidus taiwanensis LMG 19424]
          Length = 467

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 101/444 (22%), Positives = 159/444 (35%), Gaps = 52/444 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  VM        ++   + ++A   L  R++ ++   +   LR              
Sbjct: 58  RLLGKVMLFARPADAVVSYYFRENA--KLGHRERGIIAEAIYAVLRRRVEF----AQFAE 111

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                         A   +  L +           F     +      
Sbjct: 112 SG---------------------TGAASRRLALLGLAATLGRDALSPFLYPDEAEWLDRL 150

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
                        + +PEW  + L   +G+    A+ DA + P  +DL V     +    
Sbjct: 151 TTIERSSLAPRVRANLPEWLYDELVRQHGEAFAAALGDAWLRPAPLDLRVNLGKTSREAA 210

Query: 193 --------LNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                   L A   P     ++   +  +  LP F  G+  VQD  + +   L       
Sbjct: 211 LAELQAAGLGAEPTPMAPAGIRMTGKPALNQLPIFVNGLVEVQDEGSQLLCSLVAPRRGE 270

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296
            V+D CA  GGKT      + S  ++ A DVS++RL  L+  L R  L     +    E 
Sbjct: 271 MVVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHPVLIDSER 330

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           DA         D VLVDAPCS  GT+RR+PD+ W +  + +++    Q  +L      VK
Sbjct: 331 DAKIKRLAGKADRVLVDAPCSGLGTLRRNPDLKWRQSPESVLELTAKQSAILDSAARLVK 390

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG VV++ CS+ + ++E++V+  L + P    LVP              L   G   + 
Sbjct: 391 GGGRVVYATCSVLEAENEQIVRDFLAAHPN-FRLVPAAEVLADQKIEVPGLPDNGMFALY 449

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P +           DGFFA  L R
Sbjct: 450 PHL--------HQTDGFFAAVLER 465


>gi|167646178|ref|YP_001683841.1| Fmu (Sun) domain-containing protein [Caulobacter sp. K31]
 gi|167348608|gb|ABZ71343.1| Fmu (Sun) domain protein [Caulobacter sp. K31]
          Length = 423

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 153/452 (33%), Gaps = 54/452 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L+ +  +   +   L      + +     +D+  V  +    LR    +  ++ 
Sbjct: 8   AAAIEVLTEIETRHFPVRMALKRWGESARYAG--SKDRAFVSGLALDALRRKRSLGWIMG 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                        +  +L        +        V                  L    L
Sbjct: 66  DDSPRG------VVLGVL---AHDWGWSTERIGEAVAEEH----------GPGALTEDEL 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           +R++  +       A      +W +  L    G++R   +  A      +DL +      
Sbjct: 107 QRLASPRSIDEAPAAIAGDYADWLEPFLNRALGEKRAAEM-AALSQRAPVDLRINLLKTD 165

Query: 189 WA-------------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                            +          +  +   S+  +P F++G + VQD  + I   
Sbjct: 166 VERGGKAVALIGAAPAGVLDAAFRIPAPQSSDRTPSVEVVPAFSKGWFEVQDLGSQIAAA 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G +    VLD CA  GGKT   A  + +  ++ A D   RRL        R  +    
Sbjct: 226 TAGDIKGKQVLDFCAGGGGKTLALAAAMGNSGQIYAHDSDARRLADTIRRSQRAGVRNLQ 285

Query: 293 IIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           I      +         D V VDAPC+ +GT RRHPD  W    D + K    Q  +L  
Sbjct: 286 IRSPIEGEPLKGLEGKLDLVFVDAPCTGSGTWRRHPDAKWRLSPDQLAKRQIEQDAVLAD 345

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
              FVK GG +++  CSL  +++E+ V   L   P  V      +A      +   ++ +
Sbjct: 346 AADFVKVGGKLIYVTCSLLVEENEDRVTAFLERHPGFV------AAPITLDGVQEHVTAQ 399

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           G +R+TP         S+  DGFFA  L R  
Sbjct: 400 GHLRLTP--------RSANTDGFFAAVLERKA 423


>gi|319761896|ref|YP_004125833.1| fmu (sun) domain protein [Alicycliphilus denitrificans BC]
 gi|317116457|gb|ADU98945.1| Fmu (Sun) domain protein [Alicycliphilus denitrificans BC]
          Length = 439

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 152/454 (33%), Gaps = 45/454 (9%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+   +        ++   + D     L  R++  +       LR  P  + +   
Sbjct: 9   ACAELVRLTLTFEHPADAVVSRYFRDHR--ALGPRERATLAETAYAVLRRKPLFEQLARS 66

Query: 70  VLISSLPRKKYSLQQLLRVSVA-QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                        ++L  +  A Q+                   +          +++  
Sbjct: 67  -------GSGPKERRLAILGFASQLDEQARRADPSARRGPRDFLKSALTAQEKDWLDACD 119

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
                E +E          +P+W    L      +   A++ +      +DL V      
Sbjct: 120 GVREDELLEPQ-----RHNLPQWLAAPL-KAQLGDEFWALAASLQEQAPLDLRVNTLQAK 173

Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            E    +L            +      +   ++  L  FA G   VQD  + +   L   
Sbjct: 174 REDMRKELAQAGVQAAPTPYSPWGLRVQGKPALSRLDAFARGALEVQDEGSQLLALLLDA 233

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292
                V+D CA  GGK       + +  ++ A DVS  RL+ L+  L R  L        
Sbjct: 234 KRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARSGLSNVHPAAL 293

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             E D          D VLVDAPCS  GT+RR+PD+ W +    + + A  Q  +L    
Sbjct: 294 AHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQGPQAVQELAAKQTAILESAA 353

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG- 411
             VK GG +V++ CS+  +++E + +    + P    L          ++ A  L   G 
Sbjct: 354 RLVKSGGRLVYATCSMLPEENEAIAEAFGAAHPDFAPLAAGELLAQLKVEQAAGLCSGGD 413

Query: 412 ----WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               ++R+ P             DGFFA   ++ 
Sbjct: 414 DGMRYLRLWPH--------RHQTDGFFAAVWQKK 439


>gi|298290962|ref|YP_003692901.1| Fmu (Sun) domain protein [Starkeya novella DSM 506]
 gi|296927473|gb|ADH88282.1| Fmu (Sun) domain protein [Starkeya novella DSM 506]
          Length = 436

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 101/458 (22%), Positives = 159/458 (34%), Gaps = 57/458 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  ++  ++  R     +L        F      D+  + ++V   LR 
Sbjct: 1   MTP--AARLSAAIEVIGTILSDRRPAADVLKDWGRSHRFAG--SGDRAALSSLVYDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++      +L         +LR+       LDV   A +      A        
Sbjct: 57  RASSAFIMGEETPRALA------LGMLRLG----RGLDVEAVAALCDGSRFAPAPLSGAE 106

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A+L ++ L                    PEW    L   +G+ER      A      +D
Sbjct: 107 TARLTSATLDDAPAHV---------RGDYPEWLDASLAAVFGEERAA-EGAALAERAPLD 156

Query: 180 LTVKF------DIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQD 227
           L V          E     LN V      + L+   E       + + P + +G+  +QD
Sbjct: 157 LRVNSLKGAVDKAEQQLAHLNPVPGQWSPLALRIALEADGKAPPLTAEPAYLKGLVEIQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
             + I   L        VLDLCA  GGKT +L   +    ++ A D   RRL  +   + 
Sbjct: 217 EGSQIAAILAAPPRGGQVLDLCAGGGGKTLELAALMDGAGQLYAYDDDLRRLAPIHERVQ 276

Query: 285 RLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R   +   +             +   D VLVDAPC+ TGT RR+PD  W      + +  
Sbjct: 277 RAGAHNVQVRSPRGKADVLADLEGRMDLVLVDAPCTGTGTWRRNPDAKWRMRPGALAERI 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN-----SA 396
             Q ++L     FVKPGG + +  CSL  +++   V+      P    L P +       
Sbjct: 337 KEQAEILDNAARFVKPGGRLAYITCSLLDEENVAQVRAFTGRHPAFRALPPADTVLALGE 396

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
              ++  A    PEG +         +    +  DGFF
Sbjct: 397 RGIALREAAIDRPEGLL---------LTPRRTRTDGFF 425


>gi|312879344|ref|ZP_07739144.1| Fmu (Sun) domain protein [Aminomonas paucivorans DSM 12260]
 gi|310782635|gb|EFQ23033.1| Fmu (Sun) domain protein [Aminomonas paucivorans DSM 12260]
          Length = 438

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 92/452 (20%), Positives = 164/452 (36%), Gaps = 40/452 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +      V  K    +  L     +     ++  ++ L  +++   LR       ++ 
Sbjct: 5   EAAFAAWYEVE-KGRFASEALRQILTE-----VAPAERRLAASLLYGALRRQSLWKDLIR 58

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                   +     +  L +  A ++ L     AV+  A+    R ++ +    L++++L
Sbjct: 59  NRCRRPFHQLAPVTRAALILGTAGLVELRHFVPAVLMNALAMRLRAEKAQGDEPLLHAVL 118

Query: 129 RRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            RV+ +    +++          A +  IP W        +G      +        Y+ 
Sbjct: 119 HRVTEDAPRKMEQLRNSAELRDQALLFGIPGWAAAHWSREWGTSETRRLLRLSAMKAYLS 178

Query: 180 LTVKFDI-ETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232
           L V     +     L A                         LPG+ EG       S+  
Sbjct: 179 LRVDPTRRDELVEALQAAGTRAWASPDLASAVRTASFGFPPGLPGYEEGAVTPMSESSLW 238

Query: 233 PVQLFGTLNNLSVL-DLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLDRLHLY 289
             +   +  +   + DLCA  G KT  L     + T  A D+S  R+      + RL + 
Sbjct: 239 VGEAAVSSWSGGAVLDLCAGRGVKTGHLATRLPEATLEAWDLSAGRVHAGAREMARLGVA 298

Query: 290 A-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                 E DA +  P+     +L D PCS +GT  RHP+  W    + +   A  Q +LL
Sbjct: 299 DRVTFREGDALELEPRTPPSLILADVPCSGSGTWSRHPEAKWRLAAEKLEDYAVLQVRLL 358

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    V PGG VV+S CSL ++++E+VV ++L      VE+      +     +     
Sbjct: 359 ERAADLVLPGGRVVYSTCSLFREENEKVVAELLGRRKDLVEV-----PFPFKNSLFRKGR 413

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           P G + I P +          +DGF+A  L +
Sbjct: 414 PYGTV-IWPGLPW--------VDGFYAAVLMK 436


>gi|55980820|ref|YP_144117.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|55772233|dbj|BAD70674.1| Sun protein (RNA methyltransferase) [Thermus thermophilus HB8]
          Length = 398

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 107/441 (24%), Positives = 181/441 (41%), Gaps = 47/441 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M++G   R ++  +L  V R       LLD     S +    +RD+     +V   LR L
Sbjct: 1   MRAGTP-RALAVAVLLEVDRGGR-AQLLLDRALRRSPW---PERDRAYATFLVYGALRRL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D +L  +L          ++ +LR+   + L     D+A V   VE+AKR       
Sbjct: 56  RLLDHLLAPLLPRP-EGLPPEVRWILRLGALEWL-EGKPDHARVSPWVEEAKRRY--PGL 111

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           A LVN++LRR++  +     R++    +P+W  E    F+G       ++    P  + +
Sbjct: 112 AGLVNAVLRRLAPREAPECVRLS----LPDWLCEAWRGFFGDVA---FAEGFNEPAPLFV 164

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T   +++     +    L  G                F+      Q+ ++    +L    
Sbjct: 165 TAYREVDLRPGPVPGSYLWEGPKT------------DFSALGLQPQNPASLFAAKLLEAR 212

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLC   G K   L   GA+V + D+++RR E       RL L+       D   
Sbjct: 213 PGERVLDLCGGAGLKAFYLAAQGAEVVSYDLNRRRQEAGARTARRLGLW-VHYRTQDLTR 271

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
             P++    VL+DAPC+ TGT R HP++ +    +D  + A  Q +LL       + GG+
Sbjct: 272 PVPERAK-KVLLDAPCTGTGTFRAHPELRYRLSPEDPARMAALQLQLLETAAQATEEGGV 330

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L +++ E VV+  L   P              +  + + + P G         
Sbjct: 331 LVYSVCTLTEEEGEGVVRAFLARHPEFRPEPVQPPFPVLARGLGVYVDPRG--------- 381

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                   G+DGF+   LRR+
Sbjct: 382 --------GLDGFYYAKLRRV 394


>gi|294675688|ref|YP_003576303.1| tRNA/rRNA cytosine-C5-methylase [Rhodobacter capsulatus SB 1003]
 gi|294474508|gb|ADE83896.1| tRNA/rRNA cytosine-C5-methylase [Rhodobacter capsulatus SB 1003]
          Length = 442

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 166/460 (36%), Gaps = 46/460 (10%)

Query: 1   MKSGMNARLVS-SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL +   L+S +         ++   +   A R +   D+  + A +   LR 
Sbjct: 1   MTP--AARLQAILDLMSEIDTVPRPADAIVSAWFR--ARRQIGDADRGEIIAQLQELLRH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             R+   LD        R     + L  +++ +    D      +    + A        
Sbjct: 57  QARLGWWLDRHGRKDTHRN----RLLAFLALVERRKPD--QLKRLFSGAKYAPSILTEAE 110

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                  +++                   P+W    L   +G +       A ++P  +D
Sbjct: 111 ATL----VVKLQGLPVDHPAMPEELRLECPDWAAAALRRRFGTD-FETEMAAMLTPPPLD 165

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRL---------KELPESIVSLPGFAEGVWWVQDASA 230
           L V     T  H L A+        +              S+  LPG   G   +QD  +
Sbjct: 166 LRVNTLKTTREHSLRALRDIGLPAEVSAVAPFGIRVSARLSLAHLPGLKTGEIEIQDEGS 225

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   L        V+D CA  GGK    A  + +  ++ A DV++ RL++      R  
Sbjct: 226 QLVALLVDARPGDRVVDFCAGAGGKTLAIAAQMQNKGRIIACDVNEGRLKRCAERARRAG 285

Query: 288 LYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSAC 342
           L   +      E D +    K  FD VLVDAPCS TGT RR+PD  W       +   A 
Sbjct: 286 LQNAETRLLSSETDRWVKRHKAGFDRVLVDAPCSGTGTWRRNPDARWRSPQEQGLDNLAA 345

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      VKPGG +V++ CSL  +++E+ V   L + P    +VPL     +   
Sbjct: 346 LQGRILASAARLVKPGGRLVYATCSLLSEENEDRVAAFLAAHP-EFSVVPLAEVAPQLTG 404

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            A            PD L  +       DGFFA  L+R  
Sbjct: 405 SA-----------HPDYL-SLTPARHDTDGFFAAVLQRAA 432


>gi|121595687|ref|YP_987583.1| Fmu (Sun) domain-containing protein [Acidovorax sp. JS42]
 gi|120607767|gb|ABM43507.1| Fmu (Sun) domain protein [Acidovorax sp. JS42]
          Length = 425

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 157/454 (34%), Gaps = 58/454 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+  V+        ++   + +     L  R++  +   V   LR    +   L  
Sbjct: 9   ACAELVRLVLTFEHPADAVVSRYFREHR--GLGPRERATLAETVYNVLR-KKLLFEQLAR 65

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                  R         R++   IL        V     EQ K                 
Sbjct: 66  SGAGPKER---------RLA---ILGFHGPRDFVKSALTEQEKSWL-------------- 99

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET- 188
                             +PEW    L+   G+    A++D+   P  +DL V    E  
Sbjct: 100 DQCDAVRPEDLLAPHRHNLPEWLVAPLKQQLGESGFWALADSLAQPAPLDLRVNALKEKR 159

Query: 189 -------WAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                      + +V+ P     L+   +  +  L  F  G   VQD  + +   L    
Sbjct: 160 DQVQKELAQAAIKSVVTPYSPWGLRIAGKPALTKLDAFTRGAIEVQDEGSQLLALLLDAK 219

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
               V+D CA  GGKT  +   + S  ++ A DVS  RLE L+  L R  L         
Sbjct: 220 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSAHRLEALKPRLARSGLSNVHPAAIA 279

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L     
Sbjct: 280 HERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPEALRELAGKQTAILESAAR 339

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----S 408
            VKPGG +V++ CS+  Q++E + +    +                 +  A  L     S
Sbjct: 340 LVKPGGRLVYATCSVLPQENEAIAEAFGAAHADFEPQDAGALLTQLKVPDAARLCHGGAS 399

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             G++R+ P +           DGFFA    R  
Sbjct: 400 GTGYLRLWPHL--------HQTDGFFAAVWTRRA 425


>gi|326318095|ref|YP_004235767.1| Fmu (Sun) domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374931|gb|ADX47200.1| Fmu (Sun) domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 424

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 154/453 (33%), Gaps = 59/453 (13%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+   ++       ++   + D     L  R++  +       LR     + +   
Sbjct: 9   ACAELVRLTLQFEHPADAVVSRYFRDHR--SLGPRERATLAETAYTVLRKKLLFEQLARS 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                        ++L  +               +  A+  A++   ++           
Sbjct: 67  -------GSGPRERRLAILGFH-------GPRDFLKSALSDAEKSWLDQ----------- 101

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDI 186
                             +PEW  + L    G E   A++D+   P  +DL V       
Sbjct: 102 --CDAVPAADLLEPHRHNLPEWLVQPLRRQVG-EGFWALADSLAQPAPLDLRVNDLNAKR 158

Query: 187 ETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                +L            +      E   ++  L  F  G   VQD  + +   L    
Sbjct: 159 ADVQKELAKAGIPAVPTPYSPWGLRVEGKPALTKLDAFVRGAVEVQDEGSQLLALLLQPR 218

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
               V+D CA  GGKT  +   + S  ++ A DVS  RL+ L+  L R  L         
Sbjct: 219 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSAHRLDALKPRLARSGLSNVHPAAIA 278

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L     
Sbjct: 279 HERDERIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQAVQELVAKQTAILQSAAR 338

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----S 408
            +KPGG +V++ CS+  +++E + +    +    V            ++ A  L     S
Sbjct: 339 LLKPGGRLVYATCSILPEENEGIAEAFSAAHSDFVAEDVGALLEQLKVEGAAGLCSGGAS 398

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             G++R+ P +           DGFFA    R 
Sbjct: 399 GTGYLRLWPHL--------HQTDGFFAAVWTRK 423


>gi|222111895|ref|YP_002554159.1| fmu (sun) domain-containing protein [Acidovorax ebreus TPSY]
 gi|221731339|gb|ACM34159.1| Fmu (Sun) domain protein [Acidovorax ebreus TPSY]
          Length = 425

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 157/454 (34%), Gaps = 58/454 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+  V+        ++   + +     L  R++  +   V   LR    +   L  
Sbjct: 9   ACAELVRLVLTFEHPADAVVSRYFREHR--GLGPRERATLAETVYNVLR-KKLLFEQLAR 65

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                  R         R++   IL        V     EQ K                 
Sbjct: 66  SGAGPKER---------RLA---ILGFHGPRDFVKSALTEQEKSWL-------------- 99

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET- 188
                             +PEW    L+   G+    A++D+   P  +DL V    E  
Sbjct: 100 DQCDAVRPEDLLAPHRHNLPEWLVAPLKEQLGESGFWALADSLAQPAPLDLRVNALKEKR 159

Query: 189 -------WAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                      + +V+ P     L+   +  +  L  F  G   VQD  + +   L    
Sbjct: 160 DQVQKELAQAAIKSVVTPYSPWGLRIAGKPALTKLDAFTRGAIEVQDEGSQLLALLLDAK 219

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
               V+D CA  GGKT  +   + S  ++ A DVS  RLE L+  L R  L         
Sbjct: 220 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSAHRLEALKPRLARSGLSNVHPAAIA 279

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ W +  + + + A  Q  +L     
Sbjct: 280 HERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPEALRELAGKQTAILESAAR 339

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----S 408
            VKPGG +V++ CS+  Q++E + +    +                 +  A  L     S
Sbjct: 340 LVKPGGRLVYATCSVLPQENEAIAEAFGAAHADFEPQDAGALLTQLKVPDAARLCHGGAS 399

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             G++R+ P +           DGFFA    R  
Sbjct: 400 GTGYLRLWPHL--------HQTDGFFAAVWTRRA 425


>gi|296534245|ref|ZP_06896729.1| RsmB/NOP family methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296265432|gb|EFH11573.1| RsmB/NOP family methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 446

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 99/458 (21%), Positives = 161/458 (35%), Gaps = 36/458 (7%)

Query: 1   MKSGMNARLVS-SHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M     AR+ +   LL  V    R       +  + +  +  +   D+  V       LR
Sbjct: 7   MTPS--ARIAATVALLDAVASAPRRPADATANAFFRERRY--IGSGDRRAVAERAWGILR 62

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              R+D  +  + +   PR       LL ++  Q+L ++      V       + +    
Sbjct: 63  QRLRLDWHIARLGLPPTPR-------LLVMA--QLLLVEGWTRDGVLQGFPGGRFNAGPP 113

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                + +I      +             +P W  E          +   + A      +
Sbjct: 114 D-PGEMAAISAWAGAKLTPPEMPEGIALNLPAWALE-GYRARFGAELPQAAAAMDQAAPL 171

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229
           DL         E     L A  +P   +              I++   F +G+  +QD  
Sbjct: 172 DLRANLLRGTREQAMAALAAEGIPAEPMAYSPWGLRIPDRRPILASKAFTDGLIEIQDEG 231

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   L G    + V D CA   GK    A ++ +  ++TA DVS  RLE     L R 
Sbjct: 232 SQLIALLTGARPGMRVADYCAGAAGKTLAVAAMMGNRGRITACDVSATRLEGAVKRLRRA 291

Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            +   +       D +       FD VLVDAPC+  GT RR+PD        D+ +    
Sbjct: 292 GVDNAERHLLEPGDRWVKRRAGQFDCVLVDAPCTGAGTWRRNPDARLRTTARDLEELVTK 351

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR +L      V+PGG +V++ CS+  ++    VQ  L       E+ PL  A+ ++   
Sbjct: 352 QRDILDHVAQLVRPGGRLVYATCSVLPEEDGMQVQGFLSRH-ADYEVAPLAEAWAEARAG 410

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                             ++   S G DGFFA  LRR 
Sbjct: 411 QSLPEAPPPCP---GPWMELAPHSHGTDGFFAAVLRRK 445


>gi|120612086|ref|YP_971764.1| Fmu (Sun) domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120590550|gb|ABM33990.1| Fmu (Sun) domain protein [Acidovorax citrulli AAC00-1]
          Length = 424

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 155/453 (34%), Gaps = 59/453 (13%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+   ++       ++   + D     L  R++  +       LR     + +   
Sbjct: 9   ACAELVRLTLQFEHPADAVVSRYFRDHR--SLGPRERATLAETAYTVLRKKLLFEQLARS 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                        ++L  +               +  A+  A++   ++           
Sbjct: 67  -------GSGPRERRLAILGFH-------GPRDFLKSALSDAEKSWLDQ----------- 101

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDI 186
                             +P+W  + L    G E   A++D+   P  +DL V       
Sbjct: 102 --CDAVPPSDLLEPHRHNLPDWLVQPLRRQVG-EGFWALADSLAQPAPLDLRVNDLNARR 158

Query: 187 ETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                +L            +      E   ++  +  FA G   VQD  + +   L    
Sbjct: 159 ADVQKELAKAGIPAVPTPYSPWGLRVEGKPALTKVDAFARGAVEVQDEGSQLLALLLQPR 218

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
               V+D CA  GGKT  +   + S  ++ A DVS  RL+ L+  L R  L         
Sbjct: 219 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSAHRLDALKPRLARSGLSNVHPAAIA 278

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L     
Sbjct: 279 HERDERIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQAVQELVAKQTAILQSAAR 338

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----S 408
            +KPGG +V++ CS+  +++E + +    +    V            ++ A  L     S
Sbjct: 339 LLKPGGRLVYATCSILPEENEGIAEAFSAAHSDFVAEDVGTLLEQLKVEGAAGLCSGGAS 398

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             G++R+ P +           DGFFA    R 
Sbjct: 399 GTGYLRLWPHL--------HQTDGFFAAVWTRK 423


>gi|118589176|ref|ZP_01546583.1| sun protein, putative [Stappia aggregata IAM 12614]
 gi|118438505|gb|EAV45139.1| sun protein, putative [Stappia aggregata IAM 12614]
          Length = 430

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 157/459 (34%), Gaps = 50/459 (10%)

Query: 1   MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK G   RL ++  +L+ V  +   +   L        F      D+ ++  +V   LR 
Sbjct: 1   MKDGG--RLAAAIEVLTEVETRHRPVQLALKDWGAAHRFAG--SGDRTVIGNLVFDALRN 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              + A +                  + ++   + +                   +++ H
Sbjct: 57  KASLGARMKDNSAR-----------AVVLATYCLGWGKG--------LEALTDILEKDHH 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--Y 177
             + ++           +    +   + +PEW     E  +G+  V              
Sbjct: 98  APEALSDAEIACLTTAEDHAPSLHEQADVPEWLWPHFETAFGENAVEEGQALATRAPVDM 157

Query: 178 IDLTVKFDIETWAHKLNAVMLPT----------GGIRLKELPESIVSLPGFAEGVWWVQD 227
              T+K D +    +L                            + +  G+ +G + +QD
Sbjct: 158 RTNTLKADRDKVLKRLAHTGAQPTPLSPVGARIEAKPDLGRMPHVQAEEGYRKGWFELQD 217

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +   L        VLD CA  GGKT   A  + +  ++ A D  + RL  +   L 
Sbjct: 218 EASQLAAHLAQAKPGEQVLDFCAGGGGKTLALAAAMQNKGQLYAYDADRLRLAPIHERLQ 277

Query: 285 RLHLYAEDIIE-MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           R  +    + +   +         D V +DAPC+ TG  RR PD  W      +      
Sbjct: 278 RAGVRNIQVKDPASSSLDALIGQMDLVFIDAPCTGTGVWRRRPDSKWKLAEKALQDRIDD 337

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSI 401
           QR++L     +VKPGG + ++ CS+ ++++++     L  +P    V  + +        
Sbjct: 338 QRRVLDTASKYVKPGGRLAYATCSVLREENQDQASWFLEQNPSFQPVSALDIWKKTLPEA 397

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +   +S  G I +TP         S+  DGFF     R
Sbjct: 398 QLPKYVSDRGDILLTP--------ASTQTDGFFIALFHR 428


>gi|332526016|ref|ZP_08402154.1| Fmu (Sun) domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332109859|gb|EGJ10487.1| Fmu (Sun) domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 419

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 151/448 (33%), Gaps = 55/448 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++ LL  V+R       ++   +       L  RD+  +       LR    +  +   
Sbjct: 9   LATELLRSVLRLDQPADAVVSAFFRQHR--ALGARDRHALAETAYNVLRQRLLLAHLAQS 66

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                        ++L  +            +   D  +  A    E +  A        
Sbjct: 67  -------GSGALERRLAILG-----------WQGGDNFLRGALGPHEQQWLA-------- 100

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                             +P+W    L+   G E    +  A  +   +DL V       
Sbjct: 101 -QVNTVDRTTLADKLRHNLPDWLAGALQTQLG-EEFWPLVQAMDAAAPLDLRVNALKTKR 158

Query: 190 AHKLN--------AVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                        A   P     L+   +  +  L  F  G   VQD  + +   L G  
Sbjct: 159 DEAAKALAAAGITAEPTPYSPWGLRVDGKPALNKLELFTNGSVEVQDEGSQLLALLTGAK 218

Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293
               V+D CA  GGKT     ++ +  ++ A DVS  RL+ L+  L R  L         
Sbjct: 219 RGEMVVDFCAGAGGKTLALGAMMRNTGRLYAFDVSGHRLDNLKPRLARSGLSNVYPAQIA 278

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D          D VL+DAPCS  GT+RR+PD+ W +    + +    Q+ +L     
Sbjct: 279 HERDERVKRLAGKIDRVLIDAPCSGLGTLRRNPDLKWRQSPKAVQELQAKQQAILASASR 338

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP-IPVELVPLNSAYWKSIDMAMALSPEGW 412
             K GG +V++ CSL   ++EE+V           V L        + ++ A  L  +  
Sbjct: 339 LPKSGGRLVYATCSLLTAENEEIVAAFDAEHGRDFVRLDAAELLREQGVERADELVQDRC 398

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +R+ P             DGFFA   +R
Sbjct: 399 LRLWPH--------RHRTDGFFAAVWQR 418


>gi|319406108|emb|CBI79738.1| SUN-family protein [Bartonella sp. AR 15-3]
          Length = 428

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 150/438 (34%), Gaps = 25/438 (5%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +    +  L        F  +S  D+  +  IV   LR    +   +D
Sbjct: 8   QAAIDILQEIETRYRPASEALKDWGLSHRFAGVS--DRAAIGTIVYDVLRRRYSLQWRMD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                       +++ ++  ++     + +     +      A +    +         L
Sbjct: 66  S----------NNIRDVVFGTLFDSGMVTIEQVDKILEGDRYAPQLLAPQQRKAWQQRQL 115

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185
                     + +     + P +    ++          +    ++  +     +     
Sbjct: 116 VNAPDYIRADIPQWCQAHLYPLFTANWIKEAAALATRPPLDLRVNSLKATPKKVIKALEK 175

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            +  +       L    I   E   ++ + P F +G + +QD  + +   L      + +
Sbjct: 176 TKVKSFSWFQQALRIEPIEKFERHPNVQAEPAFQKGYFEIQDLGSQLVSYLIEAKAGMQL 235

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD CA  GGKT   A  + +  ++ A D +K RL  +   L R  +Y             
Sbjct: 236 LDYCAGAGGKTLALAASMENRGQIYAYDANKIRLAPIFNRLQRAGIYNVQPRVNKEELKS 295

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                D VL+D PCS TGT RR PD  W      + +    Q  +L + + ++KPGG +V
Sbjct: 296 LIGQIDIVLLDTPCSGTGTWRRRPDAKWRLTLQKVKQRQEEQFAILNEVLIYIKPGGRLV 355

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CSL   ++EE + + L+         P+N         +  +          +    
Sbjct: 356 YITCSLFNDENEEQISQFLQKHSNFF---PINMQKLWHRHFSSLI----MQPTFSNYGLT 408

Query: 423 IDGVSSGMDGFFAVALRR 440
           +   ++  DGFF   L++
Sbjct: 409 LSPAATKTDGFFLSILQK 426


>gi|163857123|ref|YP_001631421.1| putative methyltransferase [Bordetella petrii DSM 12804]
 gi|163260851|emb|CAP43153.1| putative methyltransferase [Bordetella petrii]
          Length = 556

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/448 (21%), Positives = 152/448 (33%), Gaps = 60/448 (13%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L  +++ +      L           L  RD+  V   V   LR L R       +  
Sbjct: 52  RVLGEILQWQYPADAALSHWLRAHP--ALGGRDRAEVAEAVYDVLRHLRRY----RQLSE 105

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S             R+++               L +         R           +  
Sbjct: 106 SGSGAASR------RLAI---------------LGLAATLGAAALRDGLDPAEDEWLQRV 144

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
                     A  + +P+W  ERL      +    +  A   P  +DL V          
Sbjct: 145 GRIDPATLPRAVRASMPDWLDERLGRLEDPDA---LMAALNRPAPLDLRVNPLKAERDAA 201

Query: 193 LNAVML------------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           L A++              +          S+   P F  G   VQD  + +   L G  
Sbjct: 202 LAALVNSPAARFDPQPTPHSPWGIRLAGRPSVNRWPQFENGSLEVQDEGSQLLALLVGPR 261

Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--- 294
               ++D CA  GGKT     L+ S  ++ A DVS  RL + +    R  L     +   
Sbjct: 262 RGEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAID 321

Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            E D            VLVDAPCS  GT+RR+PD+ W +  + + +    Q ++L     
Sbjct: 322 SENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPEALTELCALQTRILNSAAR 381

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            V PGG +V++ CSL  +++    ++ L + P   EL+   +             P  ++
Sbjct: 382 CVAPGGRLVYATCSLLAEENAAQAEQFLAAHP-DFELIDGAALLASRCPDLHLDGP--YV 438

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++ PD+         G DGFFA    R 
Sbjct: 439 QLRPDL--------HGTDGFFAAVFERK 458


>gi|328544051|ref|YP_004304160.1| Sun protein (FMU protein), (ribosomal RNA small subunit
           methyltransferase B, rRNA
           (cytosine-C(5)-)-methyltransferase) [polymorphum gilvum
           SL003B-26A1]
 gi|326413795|gb|ADZ70858.1| Probable Sun protein (FMU protein), (Ribosomal RNA small subunit
           methyltransferase B, rRNA
           (Cytosine-C(5)-)-methyltransferase) [Polymorphum gilvum
           SL003B-26A1]
          Length = 431

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 157/459 (34%), Gaps = 48/459 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK G      +  +L+ V  +   +   L        F      D+ ++  +V   LR  
Sbjct: 1   MKDGGRL-AAAIEILTEVDERHRPVQEALKDWGNAHRFAG--SGDRTIIGNLVFDALRHK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +   +      ++            ++   + +    D               E+RH 
Sbjct: 58  RSLGWRMRSDTPRAI-----------VLATYALSWALGPD--------RLQAVLAEDRHA 98

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--YI 178
            + V++      + +       A  + +P+W         G   V    +          
Sbjct: 99  PEAVSADEAAALQMEPAERAPDAVAADVPDWLWPVFAGSLGAGAVREGQELAARAPIDMR 158

Query: 179 DLTVKFDIETWAHKLNAVMLPT----------GGIRLKELPESIVSLPGFAEGVWWVQDA 228
             T+K   E  A +L  + +                       + +  G+ +G + +QD 
Sbjct: 159 VNTLKATREKVARRLQHIGVRETPLSPVGLRVEPRPGPARLPHVQAEEGYRKGWFELQDE 218

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           ++ +   + G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R
Sbjct: 219 ASQLVALVAGAQPGRQVLDFCAGGGGKTLALAARMENRGQIYAFDSDRIRLAPIHERLAR 278

Query: 286 LHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                  +               D V VDAPC+ TG  RR PD  W      + +    Q
Sbjct: 279 AGARNVQVRPPHEGALDDLAGHMDLVFVDAPCTGTGVWRRRPDSKWRLTERALAERVEDQ 338

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--AYWKSID 402
            ++L     FV+PGG++ +  CS+   ++ + V   L +      L    +  A      
Sbjct: 339 ARVLEAAARFVRPGGLLAYVTCSVLVPENRQQVAGFLSTHCDFETLSAAEAWTAALPGAP 398

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +   +SPEG + +TP         ++G DGFF   LRR 
Sbjct: 399 LPAHVSPEGHLTLTP--------ATTGTDGFFIALLRRK 429


>gi|319778235|ref|YP_004129148.1| Ribosomal RNA small subunit methyltransferase B [Taylorella
           equigenitalis MCE9]
 gi|317108259|gb|ADU91005.1| Ribosomal RNA small subunit methyltransferase B [Taylorella
           equigenitalis MCE9]
          Length = 423

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 167/457 (36%), Gaps = 75/457 (16%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L  V++ +     +L   +  +    L   D+ +V   V   LR             
Sbjct: 14  AEVLEEVLKFKYPADSVLSNWFKSNK--KLGHGDRAIVAEAVFDILRN------------ 59

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                         LR+      Y + A   V       A     +    + V ++L+  
Sbjct: 60  --------------LRM------YRNFAQSGVGPENQRLAILGLNSVCSRESVVAMLKEE 99

Query: 132 SREKIELLQRIA-------GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
             E  E + +I            +P+WF  ++      E   ++ +A      +D+ V  
Sbjct: 100 QAEWFERIYKIDTSTLNDLIKYSVPDWFFNKVSKLPNYE---SLLEALNQKAPLDIRVNP 156

Query: 185 ---DIETWAHKLNAVMLPTGGIRLKELPES----------IVSLPGFAEGVWWVQDASAS 231
                +    ++ +  L                       I     F +G   VQD  + 
Sbjct: 157 LKASRDEVLQEIKSRGLLDNQEYENTKFSPWGIRIKTNPSINRWDLFIDGKVEVQDEGSQ 216

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           I  QL     +  V+D CA  GGKT     L+ S  ++ ALD S  RL K +  + R  L
Sbjct: 217 ILCQLVSPKRSDWVIDFCAGAGGKTLLLGALMHSKGRLYALDTSSNRLGKAKPRIVRSGL 276

Query: 289 YAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
               +I    E            D VLVDAPC+  GT+RR+PD+ W +   D+ +    Q
Sbjct: 277 SNVTLIPIKSENAERVKRLHGKADKVLVDAPCTGLGTLRRNPDLKWRQTQKDLSELVELQ 336

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             +L      VK GG +++S CS+ ++++++ + K L+ +     + P      +   + 
Sbjct: 337 FNILTAASKCVKNGGRLIYSTCSVLEEENQQQINKFLKINTNFKLINPQKVLGDRITGLE 396

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +  + + PD+         G DGFFA  + ++
Sbjct: 397 DV---DDMLVLRPDI--------HGTDGFFAAVMEKV 422


>gi|284161464|ref|YP_003400087.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631]
 gi|284011461|gb|ADB57414.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631]
          Length = 443

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 98/452 (21%), Positives = 177/452 (39%), Gaps = 33/452 (7%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            + + +L  +   ++S    +         ++        V A V    + L  ID +L 
Sbjct: 6   ELVAEVLKVIEETKLSEKEAIKRCLS---GKISDHAIWSSVHAYVFEIEKRLNLIDFILR 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                   ++    + LLRV V ++ +  V      D  V   K+ + N   A L N++L
Sbjct: 63  NC-FREFDKQNTVFKNLLRVGVYEMHFKGVHPALATDSIVRIVKQ-RFNLKMASLANAVL 120

Query: 129 RRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           RR  +   E   R        A     PEWF     +  G++  + +  A      + + 
Sbjct: 121 RRAEKFDYERRFRKLGKVKRLALEYWHPEWFVRYAIDMLGEDEAIKLMKANNEKQSVYVR 180

Query: 182 VK---FDIETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASI 232
           V     +IE     L    +      L E+ +++        L   +EG + VQD ++  
Sbjct: 181 VNELKANIEEVRRYLENSGVEIEETPLPEVFKAVKYEKHPSVLDWHSEGKYVVQDLASCF 240

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              +     +  +LDL +APG K +    ++ +   + A+D S  RLE+++  + +L + 
Sbjct: 241 VSHVLDPQPDEIILDLASAPGLKASHIASMMENKGVIIAVDNSAERLERMKAKMKQLGVK 300

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                  D        + D VLVD PCSSTG+ R +P V W  D +  +K+   QRK++ 
Sbjct: 301 NVVCRLADGCKIKVGDV-DKVLVDPPCSSTGSFRSYPCVKWRFDRELYLKTIDVQRKMIK 359

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                +K GGI+V+S CS+   ++EE V        +      +     +     +    
Sbjct: 360 NAFRNLKSGGIMVYSTCSITFDENEENVMFASEFFKVEEVKPVIGVRGIREFRGKVFPFW 419

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  +R  P +            GFF   L+++
Sbjct: 420 DKVVRTFPHL--------HDCTGFFISKLKKV 443


>gi|88802791|ref|ZP_01118318.1| putative sun protein [Polaribacter irgensii 23-P]
 gi|88781649|gb|EAR12827.1| putative sun protein [Polaribacter irgensii 23-P]
          Length = 405

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 91/459 (19%), Positives = 163/459 (35%), Gaps = 74/459 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N        +  +  + +     ++             RD+  V   +   +R+ 
Sbjct: 1   MRLHRNLTFAVIDSIRDIFNEGVYADKAVEKALKRDKRWG--ARDRKFVAETIYDIVRWN 58

Query: 61  PRIDAVLDFVLISSLPRKKYS----LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                + +  + +   R        +  +LR  +A      + D+  V    E       
Sbjct: 59  RLYAEIAE--VKAPYDRDNIWRLFSVWCILR-GIA------LPDWNQVGDVPE------- 102

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
                       R++     EL +       IP+W  E      G+E       A     
Sbjct: 103 ------------RKIKGRFDELSRTRKFRESIPDWMDEMCAKELGEELWTKEIAALNVQA 150

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQD 227
            + L         E    KL+A  + T  +             ++     F  G + VQD
Sbjct: 151 NVILRTNTLNISKEILQKKLHAENISTETVPNHPDALVLPERANVFKTEAFHNGFFEVQD 210

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
           AS+ +          + V+D CA  GGKT  L   + +  ++ A+D+ + +L KL+    
Sbjct: 211 ASSQLVAAYLDVKPGMKVIDTCAGAGGKTLHLSALMENKGQIIAMDIYESKLRKLKVRAK 270

Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           R   +  D+  +D+     K     D +L+DAPCS  G +RR+PD  W    + I     
Sbjct: 271 RNKAHNIDMRVIDSTKPIKKLHGKADRILIDAPCSGLGVLRRNPDSKWKLQPEFIENIKK 330

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+++L Q    +KPGG +V++ CS+   +++E VQK L                     
Sbjct: 331 VQQEILQQYAPMLKPGGKMVYATCSVLPSENQEQVQKFL--------------------- 369

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                + E   + T    +K+    SG DGF+   + + 
Sbjct: 370 -----TSEAGKQFTLVSDKKVFAHISGFDGFYMALMEKK 403


>gi|317490607|ref|ZP_07949080.1| NusB family protein [Eggerthella sp. 1_3_56FAA]
 gi|325831536|ref|ZP_08164790.1| putative ribosomal RNA small subunit methyltransferase B
           [Eggerthella sp. HGA1]
 gi|316910309|gb|EFV31945.1| NusB family protein [Eggerthella sp. 1_3_56FAA]
 gi|325486790|gb|EGC89238.1| putative ribosomal RNA small subunit methyltransferase B
           [Eggerthella sp. HGA1]
          Length = 473

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 162/477 (33%), Gaps = 64/477 (13%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                ARL +  ++  V  +      ++      S    LS  D+     +    +    
Sbjct: 25  SKASPARLAALDVVRAVRERDAFAQDVIGTRIDRS---DLSSEDRAFATKLALGVVSSTG 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +D ++D  L +     K  ++  LRVS  +I++L    +A VD  VE  +        +
Sbjct: 82  TLDEIIDRALNAP-SDVKPDVRDALRVSAYEIVFLGKTPHAAVDQGVELVRSF--AMSAS 138

Query: 122 KLVNSILRRVSREKIELLQRIAGI--------SIIPEWFKERLENFYGKERVLAISDACI 173
            L N++LR++   +                     P W   +L    G +  L    A  
Sbjct: 139 GLANAVLRKIVLMRQAFPFGDPMRDPEALARLHAFPLWLARKLIADLGPQEALDFMRASN 198

Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPG--------- 217
               + + V       E      + +      + +          ++             
Sbjct: 199 EQAPLFIAVNAAKTTDEALVKAFDKLDEGLDPVSVDGVDVAGCYRVLDTRALLLPEVKRM 258

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVSGAKVTA-------L 269
           F++G   V DA++ +           S L ++ A    KT  L     +          L
Sbjct: 259 FSQGKILVTDAASQLVAASVLPERKPSSLLEVGAGRATKTILLQSDATRAYGSQLVLSTL 318

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHP 326
           D    +   L    +R      + +  DA +       + FD V +DAPCS  GT+RRHP
Sbjct: 319 DNHAFKTRLLLERAERYGAEVAEALTGDALELDAVVGDRAFDEVFIDAPCSGLGTLRRHP 378

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSP 385
           ++ W     DI + A  Q  +L      V  GG + ++ C++ ++++  VV+  L   + 
Sbjct: 379 EIRWRIKPADIAEFARVQLGMLQSAAPHVALGGTLAYATCTVTREENNGVVKAFLESEAG 438

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +L P+N     +             R++P             D  FAV   R+ 
Sbjct: 439 AGFKLAPVNGRSCVAT------------RLSPGS----------SDAHFAVRFERIA 473


>gi|113868995|ref|YP_727484.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
 gi|113527771|emb|CAJ94116.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
          Length = 466

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 159/444 (35%), Gaps = 52/444 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  VM        ++   + +++   L  R++ ++   +   LR              
Sbjct: 57  RLLGKVMLFARPADAVVSYYFRENS--KLGHRERGIIAEAIYAVLRRRVEF----AQFAE 110

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                             +  L +           F     +      
Sbjct: 111 SGTGATSR---------------------RLALLGLAATLGRDTLTPFLHPEEAEWLDRL 149

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
                        + +PEW  + L   +G+    A+ DA + P  +DL V     +    
Sbjct: 150 TTIERSSLAPRVRANLPEWLYDELVRGHGEAFAAALGDALLRPAPLDLRVNLAKTSREAA 209

Query: 193 --------LNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                   L A   P     ++   +  +  LP F  G+  VQD  + +   L       
Sbjct: 210 LAELHAAGLGAEPTPMAPAGIRMAGKPALNQLPIFVNGLVEVQDEGSQLLCNLVAPRRGE 269

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296
            V+D CA  GGKT      + S  ++ A DVS++RL  L+  L R  L     +    E 
Sbjct: 270 MVVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHPVLIDSER 329

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           DA         D VLVDAPCS  GT+RR+PD+ W +  + +++    Q  +L      VK
Sbjct: 330 DAKIKRLAGKADRVLVDAPCSGLGTLRRNPDLKWRQSPESVLELTAKQSAILDSAARLVK 389

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG VV++ CS+ + ++E++V+  L + P    LVP      +       L   G   + 
Sbjct: 390 GGGRVVYATCSVLEAENEQIVRDFLAAHPN-FRLVPAAEVLAEQKIEVTGLPDNGMFALY 448

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P +           DGFFA  L R
Sbjct: 449 PHL--------HQTDGFFAAVLER 464


>gi|329118891|ref|ZP_08247586.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464919|gb|EGF11209.1| ribosomal RNA small subunit methyltransferase B [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 441

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 186/437 (42%), Gaps = 50/437 (11%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
             +L  +L+     +A   LS ++   ++ I     R+L  +  +L  +L   +  ++  
Sbjct: 41  GQNLQDVLERI--RAAHPELSAQENGTLQDIAYGCQRYLGSLKHMLSHMLKKPVDNRELE 98

Query: 82  LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE---- 137
                  ++ Q+ Y   A +AVV+ AVE   +    ++ +   N+ILRR  RE+      
Sbjct: 99  SLL--LAALYQLHYTRNAPHAVVNEAVEAIAKIGRGQYCS-FANAILRRFLRERDRLAAS 155

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKFDIET-----WAH 191
             +       +P W+ + L N Y K     ++   + P   + +  +           A 
Sbjct: 156 YKKDDVAKYNLPRWWLDYLRNHYPKHWNNIVTAFQLHPPMTLRVNRRHGNAESYLAELAA 215

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              A           E    + SLPGF++G+  VQD  A     +    N   +LD CAA
Sbjct: 216 AGIAAKALDDCAVTLEAAVPVHSLPGFSDGLVSVQDFGAQQAAYILQPRNGERILDACAA 275

Query: 252 PGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLF 307
           PGGKT  +   +   +TALD+ + RL+++  NL RL       +  DA D   +   + F
Sbjct: 276 PGGKTGHILETADCDITALDIDRGRLKRVEDNLARLGFQTASTVCADARDLAAWYDGRPF 335

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           DAVL D PC+++G +RR+PD+ W R   D +K+A  Q  LL    + VKPGG ++F+ CS
Sbjct: 336 DAVLADVPCTASGVVRRNPDIKWLRRPGDALKTARQQESLLDALWTVVKPGGRMLFATCS 395

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L  ++++  +Q  LR         P                      + P   +      
Sbjct: 396 LFTEENDLQLQNFLRRHADAACAAPQT--------------------LLPTPKQ------ 429

Query: 428 SGMDGFFAVALRRLIQP 444
              DGF+   +R+  QP
Sbjct: 430 ---DGFYYALIRK--QP 441


>gi|92118056|ref|YP_577785.1| Fmu (Sun) [Nitrobacter hamburgensis X14]
 gi|91800950|gb|ABE63325.1| Fmu (Sun) [Nitrobacter hamburgensis X14]
          Length = 433

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 154/462 (33%), Gaps = 49/462 (10%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  ++  +  +R+     L        F      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIEVIEAIDSERVPAAKALKEWGTAHRFAG--SGDRAAISGLVYDVLRR 56

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
                 ++D       L       + L                     A   A     +R
Sbjct: 57  QASSAWIMDAAAPRSRLLGMLKLERGL--------------------DADAIAALCDGSR 96

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                ++   R     +             PEW    L + +G +R    +        +
Sbjct: 97  FAPAPLSEGERAALVSRTVTDAPAHIAGDYPEWLDGYLADVFGDDRAAEAAAMASRAP-L 155

Query: 179 DLTVKFDIETWAH------KLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQ 226
           DL V                LNA   P   + L+    +    PG      F +G   VQ
Sbjct: 156 DLRVNTLKAKPEKVLGSLRHLNATATPWSPLGLRITLGADARNPGVHAEEDFIKGGIEVQ 215

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283
           D  + +   L G      V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L
Sbjct: 216 DEGSQLAAMLSGAKPGEQVIDLCAGAGGKTLALAAMMQGRGRLIATDRDKRQLAPIHERL 275

Query: 284 DRLHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            R  ++  D+      D      +   D VL+DAPC+ TGT RR+PD  W      +   
Sbjct: 276 SRAGVHNADVRTPKGADDPLSDIRASADLVLIDAPCTGTGTWRRNPDAKWRMRAGALEVR 335

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q + L +  + VKPGG + +  CS+   ++ E V+K +          P  +A    
Sbjct: 336 LKDQIEALDRAAALVKPGGRIAYITCSVLPPENSEQVRKFIGRHSDFTVTPPAQAASVLW 395

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 L+         D    +    +G DGFF   L +  
Sbjct: 396 DKTDEFLAATYQS----DEGLLMTPRRTGTDGFFISVLHKKA 433


>gi|255994461|ref|ZP_05427596.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC
           49989]
 gi|255993174|gb|EEU03263.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC
           49989]
          Length = 461

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/494 (18%), Positives = 166/494 (33%), Gaps = 92/494 (18%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M++    RL +   L  +  K        +          LS R+   VR +V  TL+  
Sbjct: 4   METHDKKRLAAFWALYNIE-KGKYSNVAFEESTK-----GLSAREAAFVRELVFGTLKLN 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
            ++D  ++ +      R K   + LLR+ + Q+ Y+D V DYA V+  +  AK+  +N+ 
Sbjct: 58  IKLDHAMNHLKDKK-ARIKLKDRILLRLGLYQLDYMDSVPDYAAVNETIAIAKKLVKNK- 115

Query: 120 FAKLVNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKE------- 163
              L+N+ILR   R++ E          ++R++     P WF   + N            
Sbjct: 116 -VGLINAILRGYIRKRQEIEDSINDLSYIERLSVKYSYPLWFVREITNDEANNSCNKKLP 174

Query: 164 ----------------------RVLAISDACISPLYIDLTVKFDI-------ETWAHKLN 194
                                    ++         + +             E       
Sbjct: 175 ANLSVQKAINDRDTADQVPEYGAEESVLQCGNEKAPLCIRTNLKKITGEELVEKINELGI 234

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
             +       +      I     + +G + VQD S+         + +  VLDLC   GG
Sbjct: 235 EALPGRAEGAINVKGSGIFDTELYKKGYFSVQDESSQ-LAIEALDIKDCKVLDLCCGRGG 293

Query: 255 KTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDII-----EMDAFDYCPKKL 306
           KT          +V ++D  + ++ +L+    RL       +                  
Sbjct: 294 KTFAIIEQCKNVEVISMDKYEHKILQLKDEAKRLGHKVNIGVNDLFDENNLDKHCRLYDT 353

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
              V++D PC+ +GT+RR P++ +  +   +      QR LL +G   +     +V+  C
Sbjct: 354 IKYVILDVPCTGSGTVRRRPEIKYAGEDTKLADLVKLQRTLLDRGAELMNDEDHLVYMTC 413

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           S+ ++++ + +   L+       L                               +    
Sbjct: 414 SIFQKENMDNIDAFLKRHSEFKLL----------------------------QYRQYTPE 445

Query: 427 SSGMDGFFAVALRR 440
             G DGFF   L+R
Sbjct: 446 KDGTDGFFFADLKR 459


>gi|284161369|ref|YP_003399992.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
           5631]
 gi|284011366|gb|ADB57319.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
           5631]
          Length = 445

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/453 (21%), Positives = 188/453 (41%), Gaps = 46/453 (10%)

Query: 14  LLSCVMRKRISLTCLLDLEYGD----SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +L+ V+RK      +   +Y        + +L      ++ A+    ++ L  ID ++  
Sbjct: 11  ILTEVLRK---ADEIKPSQYAKRMVFEKYNILGTHIDRILTAVYYKIMKRLGVIDKIIRD 67

Query: 70  VLISSLPRKKYSLQQLLRVSV----AQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+          L+  LRV++     +  Y    D   V   V     +  + +      
Sbjct: 68  VVGVHPNILDPWLRSALRVTIEFLVFEKKYTKHLDKERVKKVVADFLSNVTHPYVGMYYF 127

Query: 126 SILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
               R      E  + ++R+    ++P W+  +       E    +  A      I + V
Sbjct: 128 ETFERIASYKLEPKDEIERLEFEYLLPAWYIRK-MKELLGEEAEELFKAFNREPMISIRV 186

Query: 183 KFDIETWAHKLNAVMLPTGGIRL---------KELPESIVSLPGFAEGVWWVQDASASIP 233
                T    ++ +      + +          E P        + +G + VQ+ ++++ 
Sbjct: 187 NTLKATVKEVIDHLRRQGKEVIVSSVVPTVLKFEGPYDFDKSKLYRKGKFVVQEEASALA 246

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L     N +V+DLCAAPGGKT  +   + +   + A DV + RL+++   + R  +  
Sbjct: 247 SILLDPKPNETVVDLCAAPGGKTIHMAELMRNRGVIHAFDVDELRLKRMEELIKRCGVKI 306

Query: 291 EDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             I +MDA        + + D V++DAPC+S GT+ ++P++ W    + I + A  Q +L
Sbjct: 307 VKIYKMDARKAVDVLGESIADKVMLDAPCTSDGTLMKNPELRWRIREEKIEEIAQLQYEL 366

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L  GI  +KP G +++  CS+ ++++E+VV++VL+     V+LVPL              
Sbjct: 367 LNTGIDLLKPKGRILYCTCSIFREENEDVVERVLKER-DDVKLVPL-----------EGY 414

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             EG++++T     +         GFF   L +
Sbjct: 415 YSEGFLKVT----IRAFPHKHNTIGFFYALLEK 443


>gi|153010378|ref|YP_001371592.1| Fmu (Sun) domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151562266|gb|ABS15763.1| Fmu (Sun) domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 429

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/449 (21%), Positives = 157/449 (34%), Gaps = 46/449 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +       + +L        F      D+ ++  IV   LR    I     
Sbjct: 8   QAAIEVLDQIEAGTRPASDVLKDWGASHRFAG--AGDRAVIGNIVYDALRRKLSIAW--- 62

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                   R      + L      +L     D A +D          +   FA  V    
Sbjct: 63  --------RMDADDARALAFGA--LLADGGMDIAAID-------AALDGDKFAPEVLEQP 105

Query: 129 RRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
           RR++ E  ++ +  A   + +PEW    LE  +G  R +    A  +   +DL V     
Sbjct: 106 RRIAWESRDVTEAPAHVQADVPEWCASSLEELFG-ARWVDEGRALATRPPVDLRVNSLKA 164

Query: 188 TWAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPV 234
           T    L A+                    E++   P       F +G + VQD  + +  
Sbjct: 165 TPEKTLTALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAA 224

Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
              G      VLD CA  GGKT   A  + +  ++ A D  + RL  +   L R  +   
Sbjct: 225 LFAGAKPGQQVLDYCAGAGGKTLALAAAMQNSGQIHAYDAERSRLSPMHERLQRAGVRNT 284

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
            +              D VL DAPC+ +GT RR PD  W  +   + +    Q+++L   
Sbjct: 285 QVHGNLDALDPLTGQMDLVLTDAPCTGSGTWRRRPDAKWRLNDQQLERRVQDQKEVLESA 344

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
             +VKPGG++ +  CSL  +++   V + L  +    E+ P         D         
Sbjct: 345 KHYVKPGGLLAYITCSLFAEENTRQVAQFLTGNADFTEVAPKALWDTIVADAGDVKP--- 401

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +          +S+G DGF+   L+R
Sbjct: 402 ---VFSSHGAVFSPLSTGTDGFYVSLLQR 427


>gi|89901952|ref|YP_524423.1| Fmu (Sun) [Rhodoferax ferrireducens T118]
 gi|89346689|gb|ABD70892.1| Fmu (Sun) [Rhodoferax ferrireducens T118]
          Length = 429

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 148/446 (33%), Gaps = 65/446 (14%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
           ++       ++   + D+    L  R++  +   V   LR     D              
Sbjct: 24  LKFDHPTDAIVAKFFRDNR--GLGPRERATLSGTVYNVLRKKLLFDHFA-------PSGS 74

Query: 79  KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
               ++L  +                                   +    +    +  ++
Sbjct: 75  GPKERRLAILGFY-----------------------GPGDFLRSALTDQEKNWLDQCEKI 111

Query: 139 LQ---RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHK 192
                       +PEW  + L++  G +    ++++      +DL V            +
Sbjct: 112 NVADLMERHRHNLPEWLVQPLKDQLG-DEFWPLAESLNLGAGLDLRVNALNAKRADVQKE 170

Query: 193 LNAVMLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           L    +             I   P      GF +G + VQD  + +   L        V+
Sbjct: 171 LAQAGIKAVNTPYSPWGLRIAGKPTLNKFDGFIKGAFEVQDEGSQLLAMLLDAKRGEMVV 230

Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAF 299
           D CA  GGK       + S  ++ A D S  RL+ L+  L R  L          E D  
Sbjct: 231 DFCAGAGGKTLAIGACMRSTGRLYAFDTSPHRLDALKPRLARSGLSNVHPAAIAHERDDR 290

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                   D VLVDAPCS  GT+RR+PD+ W +    + + A  Q  +L      +KPGG
Sbjct: 291 VKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSLGLVAELAVTQAAILQSAARLLKPGG 350

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-----WIR 414
            +V++ CS+  Q++E + Q    ++P    L          +  A  L   G     ++R
Sbjct: 351 RLVYATCSMLVQENEAIAQAFSEANPDFAPLEAGEVLSGLKVADAAKLCSGGETGQRYLR 410

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + P             DGFFA   +R
Sbjct: 411 LWPH--------RHHTDGFFAAVWQR 428


>gi|121606520|ref|YP_983849.1| sun protein [Polaromonas naphthalenivorans CJ2]
 gi|120595489|gb|ABM38928.1| sun protein [Polaromonas naphthalenivorans CJ2]
          Length = 450

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 126/444 (28%), Positives = 195/444 (43%), Gaps = 47/444 (10%)

Query: 25  LTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVLISSLP---RK 78
            + +L +  G S    L   D   +  V+A+    LR+L R +A+   +     P     
Sbjct: 23  ASVVLAVRDGQSMTPALEDVDAQLRPGVQALAFHALRWLGRAEALRQQLAKRPPPPEADA 82

Query: 79  KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
              +   L  S  +  Y     + +VD AVE AKR     H A  +N  LRR  RE+ EL
Sbjct: 83  LLCVALALACSAEEAPYT---AHTLVDQAVEAAKRSDATLHQASFINGCLRRFLREQGEL 139

Query: 139 L----QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194
           +    +    +   P+W+ +R++  +   +   I  A  S   + L +     T A  L+
Sbjct: 140 MALTEKSPQAVWNHPQWWIDRVKKDHP-AQWQDILRANNSRAPLILRINERKTTPAQYLH 198

Query: 195 AVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL---- 243
           A++              +      + SLPGFAEG + VQDA+A +   L           
Sbjct: 199 ALLAMDIGAFPVGEHGVVLTEARPVTSLPGFAEGHFSVQDAAAQLAAPLLLDGLMAAGEG 258

Query: 244 ----SVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEM 296
                +LD CAAPGGKTA L+  +   VTALD+  RR E++  NL RL L A  +     
Sbjct: 259 SPRLRILDACAAPGGKTAHLLELADCDVTALDIDARRCERIAQNLQRLGLRAHIVVGDAG 318

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
              D+   +L+D +L+DAPC+++G +RRHPDV W R   DI + A  Q +LL      ++
Sbjct: 319 RPGDWWDGRLYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAQIQARLLATLWPLLQ 378

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+  CS+ + + E+ VQ         + L+P             A+ P+  +R  
Sbjct: 379 PGGRLVYCTCSVFRAEGEQQVQAFAARHTDAL-LLPSPGHLLPQGGAGAAVFPDNLMR-- 435

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
                         DGF+   L +
Sbjct: 436 ------------EHDGFYYALLEK 447


>gi|49473837|ref|YP_031879.1| SUN protein (Fmu protein) [Bartonella quintana str. Toulouse]
 gi|49239340|emb|CAF25673.1| SUN protein (FMU protein) [Bartonella quintana str. Toulouse]
          Length = 428

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 147/450 (32%), Gaps = 47/450 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +       +        F   S  D+  +  IV   LR    +   ++
Sbjct: 8   QAAIDILKEIETRHCPAGQAIRAWGLSHRFAGAS--DRAAISTIVYDVLRRRYSLQWRME 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                    +      LL         + +            A +    +         L
Sbjct: 66  SD-----DMRDVVFGTLLDTG-----KMTIEQIDGELEGDRFAPQLLGPKQRQSWQRRQL 115

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
                     + +     + P +           +     + A  +   +DL V   ++ 
Sbjct: 116 VDAPDYIRGDIPQWCQAHLHPLFA----------DNWEIEAAALATRPSLDLRVN-SLKA 164

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLP--------------GFAEGVWWVQDASASIPV 234
              K+   +  T    L   P+++   P               F +G + +QD  + I  
Sbjct: 165 TPEKVLKELAKTKIQFLSWFPQALRIAPIEKFSRHPNIQMELAFQKGHFEIQDLGSQIVA 224

Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
            L     ++ VLD CA  GGKT   A  + +   + A D +K RL  +   L R  +   
Sbjct: 225 HLVEAKESMQVLDYCAGAGGKTLALAASMKNQGHIYAYDSNKVRLASIFDRLQRAGVRNV 284

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
                           D VL+DAPCS TGT RR PD  W    + + +    QR +L + 
Sbjct: 285 QARAHREELKSLVSQMDRVLLDAPCSGTGTWRRRPDTKWRLTLEQVRQRQVEQRAILNEA 344

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           + ++KP G +V+  CSL   ++EE +   L+         P+N         + +     
Sbjct: 345 MDYLKPNGRLVYITCSLFFGENEEQISLFLKQHSNF---YPINMRTLWQKYFSFSPVQP- 400

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              I       +   ++  DGFF   L++ 
Sbjct: 401 ---IFSHYGLTLSPATTKTDGFFLSVLQKK 427


>gi|149200025|ref|ZP_01877051.1| NOL1/NOP2/sun family putative RNA methylase [Lentisphaera araneosa
           HTCC2155]
 gi|149136898|gb|EDM25325.1| NOL1/NOP2/sun family putative RNA methylase [Lentisphaera araneosa
           HTCC2155]
          Length = 434

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/450 (20%), Positives = 162/450 (36%), Gaps = 42/450 (9%)

Query: 7   AR---LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           AR      + +   V   R  L   L   + ++       RD+  +   +    R+   +
Sbjct: 11  ARSYSEAIAQIFYEVRESRNPLDQELRRFFRNNKKYG--SRDRRFIAESLYSLFRWFGWV 68

Query: 64  DAVLDFVLISSLPRKKYSLQQL-LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
             +L       +     + +       +  +L LD      V     Q      N     
Sbjct: 69  QDIL------PISAPDVACENKKFCSGLIAVLCLDNLHIDPVAEHFSQLAGV--NMQGVP 120

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
             +   +R    K   L+++    ++P+WF E L   +  E ++ I      P++I L  
Sbjct: 121 KTDLDEKRQWMGKHFGLKQLKNTDLVPDWFVEELPKDFNLEELI-IDLQKRPPMWIRLQG 179

Query: 183 KFDIETWAHKLNAVMLPTGGIRLK-------ELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             +      +L           +            ++  L  F +G + VQD ++     
Sbjct: 180 PQNKNNTLRELKERDFDIYPHSIMKKAIKIVNPRVNLYELKSFRDGQFEVQDLASQSLGF 239

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                      D+CA  GGKT   A  + S   +T+ D+ + +L+ L+    R       
Sbjct: 240 ACQAEGGQRWWDVCAGAGGKTLLLADHMESKGGITSTDIREWKLDDLKKRARRARFSNIT 299

Query: 293 IIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
              +        K+ +D VLVDAPCS TGT RR+PD  W+    D  + A  Q  +L + 
Sbjct: 300 TKNLKKTRSASKKRPYDGVLVDAPCSCTGTWRRNPDARWSSTAKDCEELATIQADILEKS 359

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VK  G++V++ CS   +++EE+V+  L++ P        +    K           G
Sbjct: 360 APGVKADGVLVYATCSFSVRENEEIVENFLKTHPDFYLEDFPHPLTLKPTG--------G 411

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +RI+P             D  FA   RR 
Sbjct: 412 ILRISPS--------PEDCDAMFAARFRRK 433


>gi|222084588|ref|YP_002543117.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Agrobacterium radiobacter K84]
 gi|221722036|gb|ACM25192.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Agrobacterium radiobacter K84]
          Length = 429

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 152/448 (33%), Gaps = 46/448 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       ++   
Sbjct: 10  AIEVLADIETRKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMGD- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         +L              + +   A   A     ++   +  ++    
Sbjct: 67  -----DSPSALAHAVL-----------FRQWGLTPEA--LAAELDGDKFAPEAPSAEALT 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
               +            IPEW +   +  +G   +     A      +DL       +  
Sbjct: 109 AFAARKLGDAPRHIQGDIPEWVEHSFQQAFGDSWLAEA-QALAERPTLDLRANALKASRD 167

Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237
             + A+                           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KAVKALERAGAQASKIARNGIRIPAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD CA  GGKT  +   + +  +V A D  +RRL  +   L R       + 
Sbjct: 228 LPQEGDQVLDYCAGGGGKTLAMSAAMHNKGQVHAYDTDRRRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +        +  FD VLVDAPC+ TGT RR PD  W     ++ +    Q++ L Q   F
Sbjct: 288 DERNALLALRGKFDKVLVDAPCTGTGTWRRRPDTKWRLTQKNLDERISQQQEALAQAGEF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY-WKSIDMAMALSPEGWI 413
           V+PGG++++  CS+   ++E  V +   ++P    +  L+S       D     S +G  
Sbjct: 348 VRPGGMLLYVTCSVLPDENETQVNRFAANNPEFEVVEALSSWEKLFGNDAPKPRSSDG-- 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    +   S+  DGFF   L+R 
Sbjct: 406 -----KTITLTPASTDTDGFFFCRLQRK 428


>gi|289524256|ref|ZP_06441110.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502912|gb|EFD24076.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 440

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 178/457 (38%), Gaps = 47/457 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +     RK + L+ +L     D     L + ++ L   +V   +R       +L 
Sbjct: 5   EAALAIWEE-TRKGLFLSQVLRRFGED-----LPEGERKLASTLVYCAMRRYNLWVEILR 58

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVA-DYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L       +   + +L +  A +L +      ++V+  VE  K+  +N   A LVN++
Sbjct: 59  SFLRRPFETLQAETRDILILGCAGLLEIKHFVPQSLVNAFVEATKK--KNPADAALVNAV 116

Query: 128 LRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           LR+++ +                 A    +P+W   R    +G++    +  + +   Y+
Sbjct: 117 LRKIASDGREKLEELKNSPNQINQALFWGLPQWIARRWMESWGQDLAKKLFVSQLIKPYL 176

Query: 179 --DLTVKFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
              L+ + D      K                +          S+ G+ EG+W  Q  S+
Sbjct: 177 SFRLSPRTDPGEMGEKFFEEGVKSWRSPYFNYVLRSNSFGHPPSMLGYNEGLWTPQTESS 236

Query: 231 SIPVQL----FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLD 284
                       +L    +LD+CA  G K   ++     VT  A D+SK R+   R  L 
Sbjct: 237 IFVSDKVLSLSSSLGKRKILDMCAGRGIKAGHILERAQDVTIEAWDLSKNRVYAGRRELR 296

Query: 285 RLHLYAEDII-EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           RL +    I    D+    P++  + VL+DAPCS +GT  RHP+  W      +   +  
Sbjct: 297 RLGVQNRSIWKVGDSLKLAPEEAPEIVLLDAPCSGSGTWGRHPEGKWRLSPGKLSSYSDL 356

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR LL + I  V  GGIVV+S CS+ ++++E V+ + L S+P  +E+      +      
Sbjct: 357 QRDLLERAIGMVTTGGIVVYSTCSVFREENERVIGEALCSNPDIIEIEIEGGGFPLQRGR 416

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      + P            +DGFF   L +
Sbjct: 417 PFGYY------LLPGSPW--------VDGFFLCILMK 439


>gi|269120809|ref|YP_003308986.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386]
 gi|268614687|gb|ACZ09055.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386]
          Length = 437

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/446 (20%), Positives = 186/446 (41%), Gaps = 36/446 (8%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
           +LL  ++         L+  +    +   +++++  +  I++ TL+ L  ID +++    
Sbjct: 10  NLLDEIIAGGKYSNLQLNYYFSTKGY---NKKEKSFITNIIHTTLKNLIFIDYLIEKNAS 66

Query: 73  SSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           +   RK   ++QLLR+SVAQ +L  +     +V  AVE AK    N+H    VN ILR +
Sbjct: 67  NIKKRK---IKQLLRISVAQFLLNKESDYSGIVFEAVETAKII--NKHQTGFVNVILRNI 121

Query: 132 SREKIE------LLQRIAGISIIPEWFKERLENFYGKERVLAISDA-----CISPLYIDL 180
            ++  +        ++ +     P+W   ++ + Y +  V  +            +    
Sbjct: 122 FQKYDQLVSEIPPTKKYSVELSYPQWIINKIASDYPENYVRILQSYKTKSYLSFRINPRK 181

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
             + D    A K  + +L            +++    F E  + VQDAS+ + V+     
Sbjct: 182 FSREDFIKLAGKHESKILFEIENVFYMSNSALLDTKEFKENCFSVQDASSYLAVKALDVQ 241

Query: 241 NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
           ++  VLD C+APGGK +      +   V A D+ + ++  L+    + +     I+  DA
Sbjct: 242 DDDIVLDACSAPGGKMSAILQEYNPDLVVASDIHEHKIGMLKEIKKKNNFTNLKIVLNDA 301

Query: 299 FDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FD +L+D PCS  G +R+ P+ ++T +  DI K    Q+ +       +K 
Sbjct: 302 REIGELNEKFDKILLDVPCSGLGVLRKKPEKIYTLENSDIKKLKKIQKAIFDSAYHSLKE 361

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            G++++S C+  ++++   ++      P  V    +              S         
Sbjct: 362 NGVIIYSTCTFTREENTNNIKYFTEKYPDLVIENVIFPDNVFISKDEFGGS--------- 412

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                ID  +  +DGF+    R+  +
Sbjct: 413 ----FIDYRNKYLDGFYIAKFRKKGK 434


>gi|319951686|ref|YP_004162953.1| fmu (sun) domain protein [Cellulophaga algicola DSM 14237]
 gi|319420346|gb|ADV47455.1| Fmu (Sun) domain protein [Cellulophaga algicola DSM 14237]
          Length = 408

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 158/462 (34%), Gaps = 76/462 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N        L+ +  +      ++              RD+  +       +R+ 
Sbjct: 1   MKLHRNLVFAVVDALNLIFNEEEYADKVVQKVLKFDKRWG--ARDRGFIAETTYEIVRYK 58

Query: 61  PRIDAVLDFVLISSLPRKKY----SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                + +  + +   R       ++  +LR  + ++                       
Sbjct: 59  RLYIEIAE--VKAPFSRPNLFRVFAVWAVLR-GI-EL----------------------- 91

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
              + ++     R++     EL +       IP+W  E      G++R     +A     
Sbjct: 92  -PDWKQIETVPNRKIKGRFDELSKIRKFKESIPDWMDEIGVKSLGEKRWTKELNALNQQA 150

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227
            + L         E     L    +    I             ++     F  G++ VQD
Sbjct: 151 DVILRANTLKTTKEALRANLLENGIDCEPIAGYTDALKLAERGNVFRTDAFQNGMFEVQD 210

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
           AS+ +  +         V+D CA  GGKT  +   + +  ++ A+D+ + +L++L+    
Sbjct: 211 ASSQLVAEFLDVKPGQRVIDTCAGAGGKTLHIAALMENKGQLIAMDIYENKLKELKRRAK 270

Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           R   +  +   +D+     K     D +L+DAPC+  G +RR+PD  W    + + K   
Sbjct: 271 RNGAFNIEPRVIDSTKVIKKLYGKADRILIDAPCTGLGVLRRNPDAKWKLQPEFLEKIMA 330

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSI 401
            Q+++L      +KP G +V++ CS+  Q++ E V+  L         L+  N       
Sbjct: 331 TQQEILRSYSKMLKPEGKMVYATCSILPQENNEQVKSFLASEEGRDFRLIKENK------ 384

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                                I    SG DGF+   L ++ +
Sbjct: 385 ---------------------IYASESGYDGFYMALLEKIAE 405


>gi|83746246|ref|ZP_00943299.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
 gi|83726996|gb|EAP74121.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
          Length = 464

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 92/446 (20%), Positives = 172/446 (38%), Gaps = 55/446 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + + +   L  R++ ++       LR              
Sbjct: 58  KVLARLLHFAAPADMVVSQYFREHS--ELGHRERGIIAEAAFAVLRRKVEF----GQFAE 111

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S       + ++L+ + + Q      A    +   +  ++ +  +R       ++  RV 
Sbjct: 112 SG---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPSEAEWLDRWAIIDRTALAPRV- 162

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                        + +P+W  + L   +G+    A++ A ++P  +DL V     + E  
Sbjct: 163 ------------RANLPDWLFDALVVQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAV 210

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +      L  +   +   P       F  G   VQD  + +  QL       
Sbjct: 211 LATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 270

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D CA  GGKT  +   + S  ++ ALDVS++RL  L   L R  L       +D+  
Sbjct: 271 MVVDFCAGAGGKTLAIGAAMRSTGRLYALDVSEKRLANLGPRLARSGLSNVHPARIDSEH 330

Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K
Sbjct: 331 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 390

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CS+  +++++VV++ L      V +        + I + M      ++ + 
Sbjct: 391 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELY 446

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P +           DGFFA  L R  
Sbjct: 447 PQV--------HQTDGFFAAVLERRA 464


>gi|171464051|ref|YP_001798164.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193589|gb|ACB44550.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 519

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 31/318 (9%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGI 203
            +PEW  +    + G++    ++ + + P  +DL       + E    ++NA+      I
Sbjct: 184 NLPEWLWDAFGQYPGEDTREELAKSLMHPALLDLRANTMKTNREELLAQMNALGGRYQAI 243

Query: 204 RLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
                P+        ++ + PGF  G++ VQD  + +   L        V+D CA  GGK
Sbjct: 244 PTPYAPDGVRIMGKPALQNTPGFKAGMFEVQDEGSQLLAYLLAPKRGEMVVDFCAGAGGK 303

Query: 256 ---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMDAFDYCPKKLFD 308
                 ++ S  ++ ALD S+RRL  L+    R  L     +    E DA         D
Sbjct: 304 TLAIGVIMRSTGRLYALDTSERRLANLKPRQARSGLSNVHPVWIDSENDAKIKRLAGKID 363

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VLVDAPCS  GT+RR+PD+ W +    +++    Q  +L      +KPGG +V++ CSL
Sbjct: 364 RVLVDAPCSGMGTLRRNPDLKWRQTQAGVLELNQKQMSILNSAARLLKPGGRLVYATCSL 423

Query: 369 DKQDSEEVVQKVLRSSPIPVELVP----LNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
             Q+++ + +  L   P   E+VP    L S + K            W ++ P +     
Sbjct: 424 LPQENQAIAEDFLAKHP-QFEVVPAAEVLKSLFPKEKLPLGCSLDNPWWQLWPHI----- 477

Query: 425 GVSSGMDGFFAVALRRLI 442
               G DGFF    ++ +
Sbjct: 478 ---HGTDGFFGAVFQKKV 492


>gi|241668134|ref|ZP_04755712.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876669|ref|ZP_05249379.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842690|gb|EET21104.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 425

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 187/448 (41%), Gaps = 36/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   ++ +  +     LS +D+  V+ +     R    ++
Sbjct: 1   MNTRAIAAKSILDIIDNKHSL-LTIEHKLIEH---NLSDKDKSFVKLLCYEFFRNYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            V    L     + K   + L+ + + QI  ++   YA ++  V  A ++ +     KLV
Sbjct: 57  NVASLYLA---EKTKLKAKILVMLGILQIFEINQPHYASINETV-AACKNLKILWAKKLV 112

Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N +LR++ R+   I           + +W    L+  Y  +           + ++I L 
Sbjct: 113 NGVLRQIVRDLEDITPNYTEHKTHDLAQWLSNMLKEQYPVDYQKIAKAVNSKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      L+   +      + +   F +G + VQD SA     +
Sbjct: 173 KAKDPQYVIDYFDKNNISYSKTELENCIKLDKAIDVKNNTLFQQGYFSVQDISAQYMGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
               NN  +LD CAAPGGKT  ++     AK+TA+D+  +RLE L+ N+ R+       +
Sbjct: 233 INVQNNDIILDACAAPGGKTTHILELAPQAKITAIDIIDKRLELLKENITRIAKNNHVNV 292

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                       ++ +++DAPCS+ GT++R+PD+   R ++DI      Q ++L    + 
Sbjct: 293 TKHDLTQPLAGQYNKIILDAPCSALGTLKRNPDIKVLRKSEDIKSIQTLQAEILDSLWNN 352

Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +   G +++  CS+  Q+++  ++  L       E+V +        D           
Sbjct: 353 NLTNNGYLLYITCSILAQENQLQIKNFLSKH-QDAEIVEIKILENYKTDYG--------Y 403

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +I P             DGF+   ++++
Sbjct: 404 QILP--------TEDKGDGFYYCLIKKI 423


>gi|282855986|ref|ZP_06265277.1| Fmu [Pyramidobacter piscolens W5455]
 gi|282586205|gb|EFB91482.1| Fmu [Pyramidobacter piscolens W5455]
          Length = 439

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 107/451 (23%), Positives = 176/451 (39%), Gaps = 43/451 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             + +L   V +  I    L       +    +S  D+ L  ++    +R L   + + +
Sbjct: 13  EAAMYLWRQVDKGGIVSESL------RTLGDRVSPPDRTLAASLAYALVRRLSLWEHLRE 66

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAV-VDLAVEQAKRDKENRHFAKLVNSI 127
             L+    +   S++  + +  A +  L+    AV +   +E  K    +   A++VN++
Sbjct: 67  KFLLPRPEKFSQSVRAAVLMGAAGLTELEKFAPAVLISSLIEWTKT--RDPRGARVVNAV 124

Query: 128 LRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           LRR               + L  +  +S +P W  ER    YG      + +       +
Sbjct: 125 LRRVLEEGPAELQRLRDDDSLDSLCLLSGVPSWVGERWRRDYGPAVGRRLVEQNAGGSSL 184

Query: 179 DLTVKFD-IETWAHKLNAVMLPTGGIRLKELPES-----IVSLPGFAEGVWWVQDASASI 232
            L +  D        L A         L +           +LPG+ EG +  Q  S+ +
Sbjct: 185 SLRLSPDAPRDLPQLLEAAGQTVEESPLPDGLRLAGTALPSALPGYREGWFTPQSESSIL 244

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLY- 289
                       +LD+CA  G KT Q+      +   A D+SK R+      ++RL L  
Sbjct: 245 VGTEAADFEGARLLDMCAGRGVKTGQIAQLRPDIAVEAWDLSKGRVAAGVREMERLKLSG 304

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              +    A +  P    DA+LVDAPCS +GT RRHP+  W    +++ +    Q +LL 
Sbjct: 305 RVVMRAGSALELEPLGAPDAILVDAPCSGSGTWRRHPEGKWRLSPENLEELTELQYRLLC 364

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +  S VK GG VV+S CSL   ++EEVV+K LR+ P   E          +      L+P
Sbjct: 365 RAFSLVKKGGKVVYSTCSLLAAENEEVVEKALRAFPEISERPLSADFGGIACGRGGVLTP 424

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           E                    DGF+  A  +
Sbjct: 425 ENPW----------------TDGFYLAAFSK 439


>gi|158425326|ref|YP_001526618.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158332215|dbj|BAF89700.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 433

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 162/460 (35%), Gaps = 45/460 (9%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L+ ++ +R      +        F      D+  +  ++   LR 
Sbjct: 1   MTPS--ARLSAAIDILADIIARRRPAGDAIKDWGLSHRFAG--SGDRAALSGLIFDALRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 V+               + LL   +A +  LDV            AK     R 
Sbjct: 57  RASCAHVMG--SEEP--------RALLLGMLATVRGLDVDA---------IAKLCDGARF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--Y 177
               ++   R                   P+W    L+  +G+ERV              
Sbjct: 98  APAPLSEDERTRLASPSLEGAAPWVRGDYPQWLDGELKAMFGEERVAEAEALAARAPVDM 157

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIR---------LKELPESIVSLPGFAEGVWWVQDA 228
              T+K   E    +L  +    G                   I S P F +G   VQD 
Sbjct: 158 RVNTLKAKPEEALAELAHLHPEPGQWSPLALRIPLGADGKQPPITSEPAFVKGGVEVQDE 217

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
            + I   L   +    VLDLCA  GGKT +L   + +  ++ A D   RRL+ +   L R
Sbjct: 218 GSQIAAILAAPMPGSQVLDLCAGAGGKTLELAALMDNKGQLYAHDSDVRRLKPIHERLQR 277

Query: 286 LHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             +    I             +   D VLVDAPC+ TGT RR+PD  W      + +   
Sbjct: 278 AGVRNVQIRAPRGTADVLSDLEGHMDLVLVDAPCTGTGTWRRNPDAKWRVRPGALAERTA 337

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q K+L Q + +VKPGG + +  CSL   ++   ++ +L   P    +VP   A      
Sbjct: 338 EQAKILEQAVRYVKPGGRLAYVTCSLLNSENAGQIRALLEKHP-DFSVVPSTEAVLALGS 396

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +AL         P+ L  +    +G DGFF   L+R  
Sbjct: 397 RGLALRQAALD--LPEGLM-LTPRRTGTDGFFISVLKRAA 433


>gi|148255023|ref|YP_001239608.1| putative SUN-family protein, RNA methyltransferase [Bradyrhizobium
           sp. BTAi1]
 gi|146407196|gb|ABQ35702.1| putative SUN-family protein, RNA methyltransferase [Bradyrhizobium
           sp. BTAi1]
          Length = 432

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 97/464 (20%), Positives = 165/464 (35%), Gaps = 57/464 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  ++  +   R      L        F      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIDIIETIEADRAPAAKALKDWGTSHRFAG--SGDRAAIAGLVWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 V++             +  +L++       LDV     +            +R 
Sbjct: 57  RASSAWVMEDDSAR------ARVLGMLKL----ERGLDVPTIGAM---------CDGSRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYI 178
               +     +    +             P+W    L   +G +R   A++ A  +PL +
Sbjct: 98  APPPLTDQEEKALASRTTEGAPSPVAGDYPDWLDPYLAAVFGDDRVAEAMAMASRAPLDL 157

Query: 179 DLT-VKFDIETW---AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDA 228
            +  +K   E        L AV  P   I L+    +    PG      F +G   VQD 
Sbjct: 158 RVNTLKAKREKVQASLKHLGAVPTPWSPIGLRITLGADARNPGIHAEEDFIKGAIEVQDE 217

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
            + +            V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L R
Sbjct: 218 GSQLAALFTAAKPGEQVIDLCAGAGGKTLALAAMMGGKGRLIATDDDKRQLAPIHERLSR 277

Query: 286 LHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             ++  D+             +   D V++DAPC+ TGT RR+PD  W      +     
Sbjct: 278 AGVHNADVRSPKGDADPLADIRASADLVVIDAPCTGTGTWRRNPDAKWRMRPGALEIRLK 337

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L +    VKPGG + +  CS+ + ++ + V+  +   P    + P +       D
Sbjct: 338 DQAEVLDRAAGLVKPGGRIAYITCSVLQPENGDQVRGFVARHP-EFSIQPPDQTATVLWD 396

Query: 403 MAMALSP------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A A +       EGW+         +    +G DGFF   L++
Sbjct: 397 KAEAFAEAALKSDEGWL---------MTPRRTGTDGFFVSVLKK 431


>gi|326319222|ref|YP_004236894.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376058|gb|ADX48327.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 461

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 119/444 (26%), Positives = 181/444 (40%), Gaps = 47/444 (10%)

Query: 25  LTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKY 80
           +  ++ +  G S    L+  D   +  V+A+    LR L R +A+   +      PR   
Sbjct: 30  VDAVMAVRGGQSGTAALAAVDPVLRAGVQALFFAVLRQLGRAEALRAQLAPRRPKPRVDA 89

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE--- 137
            L   L +   Q        + +V+ AVE AKR    R  A  VN+ LRR  RE+     
Sbjct: 90  LLCSTLALG-WQAGAAPYEPFTLVNQAVEAAKRHAATRGQAAFVNACLRRFLRERDALVA 148

Query: 138 -LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTV-KFDIETWAHKLN 194
                       P W+ ERL   +  +    +          + +   K D+  +   L 
Sbjct: 149 ATESDPVARWNHPAWWIERLRKDHPGQWEQILRANNAQAPMALRIHRGKVDMAGYLAALE 208

Query: 195 AVMLPTGGIR----LKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVL 246
           A  +    +     + E P+ +  LPGFA+G   VQD +A                L VL
Sbjct: 209 AAGMKAWPVTDTGLVLESPQPVQRLPGFADGWVSVQDLAAQQAAPLLLSGLDLGRPLRVL 268

Query: 247 DLCAAPGGKTAQLIVSG-----AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---- 297
           D CAAPGGKTA L+          VTAL++   R  ++   L RL L A  ++  D    
Sbjct: 269 DACAAPGGKTAHLLEYAGAGSPVHVTALEIDPLRSARIGETLQRLGLQA-QVLVADAGRP 327

Query: 298 ---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                  C  + FDA+L+DAPC+++G +RRHPDV W R   DI + A  Q +LL      
Sbjct: 328 EDWWQQACGGEPFDAILLDAPCTASGIVRRHPDVRWLRRPGDIAQLATQQARLLSTLWPL 387

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           ++PGG +++  CS+ + + ++ VQ  L ++     L        +           G +R
Sbjct: 388 LRPGGRMLYCTCSVFRAEGDDTVQSFLANNNDAHLLPSPGHLLPRDPGDG------GSVR 441

Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL 438
             P             DGFF   L
Sbjct: 442 ENPSRE---------HDGFFYALL 456


>gi|305667349|ref|YP_003863636.1| putative sun protein [Maribacter sp. HTCC2170]
 gi|88709397|gb|EAR01630.1| putative sun protein [Maribacter sp. HTCC2170]
          Length = 403

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 160/457 (35%), Gaps = 72/457 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N        L  +  +      +++             RD+  +       +R+ 
Sbjct: 1   MKLHRNLVFAVIDALGLIFNEGEYADKVVEKVLKRDKRWG--SRDRGFIAETTYDIVRWK 58

Query: 61  PRIDAVLD---FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                + +       ++L R  +++  +LR  +      D+ D                 
Sbjct: 59  RLYAEIAEVKAPYSRANLFRL-FTVWAVLR-GI------DLPD----------------- 93

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             + +L     RR+     EL +       IP+W  E      G++   +   A      
Sbjct: 94  --WKQLEPVPARRIKGRFDELSKIRKFKESIPDWIDELGVKALGEKLWTSEIAALNKQAD 151

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDA 228
           + L V       E     L    +    I+            ++ +   F +G + VQDA
Sbjct: 152 VILRVNSLKTTKEKLRKSLLDDGIVAEPIKGYSSALKLAERTNVFTKQSFKDGWFEVQDA 211

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+ +  +         V+D CA  GGKT  L   + +  ++ ALD+   +L++L+    R
Sbjct: 212 SSQLVSEFLDVQPGQRVVDTCAGAGGKTLHLAALMQNKGQLIALDIYDNKLKELKRRARR 271

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              +  +   + +     K     D VL+DAPC+  G +RR+P   W    D + K    
Sbjct: 272 NGAHNIEPRHISSTKIIKKLYNKADRVLIDAPCTGLGVLRRNPGAKWKMQPDFLEKITKT 331

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+++L      VK GG +V++ CS+  Q++ E V+  L S                    
Sbjct: 332 QQEILRSYSKMVKSGGKMVYATCSILPQENNEQVKSFLAS----------------EEGK 375

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              L+ E           KI    SG DGF+   L R
Sbjct: 376 DFTLAKEN----------KIFASKSGYDGFYMALLER 402


>gi|300703300|ref|YP_003744902.1| ribosomal RNA small subunit methyltransferase b (rsmb) [Ralstonia
           solanacearum CFBP2957]
 gi|299070963|emb|CBJ42272.1| Putative ribosomal RNA small subunit methyltransferase B (rsmB)
           [Ralstonia solanacearum CFBP2957]
          Length = 464

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 170/446 (38%), Gaps = 55/446 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + + +   L  R++ ++       LR              
Sbjct: 58  KVLARLLHFAAPADMVVSQYFREHS--ALGHRERGIIAEAAFAVLRRKVEF----GQFAE 111

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S       + ++L+ + + Q      A    +   +   + +  +R       ++  RV 
Sbjct: 112 SG---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPPEAEWLDRWAIIDRTALAPRV- 162

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                        + +P+W  + L   +G+    A++ A ++P  +DL V     + E  
Sbjct: 163 ------------RANLPDWLFDALVAQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAV 210

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +      L  +   +   P       F  G   VQD  + +  QL       
Sbjct: 211 LATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 270

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D CA  GGKT  +   + S  ++ A DVS++RL  L   L R  L       +D+  
Sbjct: 271 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLANLGPRLARSGLSNVHPARIDSEH 330

Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K
Sbjct: 331 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 390

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CS+  +++++VV++ L      V +        + I + M      ++ + 
Sbjct: 391 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELY 446

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P +           DGFFA  L R  
Sbjct: 447 PQV--------HQTDGFFAAVLERRA 464


>gi|86133711|ref|ZP_01052293.1| NOL1/NOP2/sun family protein [Polaribacter sp. MED152]
 gi|85820574|gb|EAQ41721.1| NOL1/NOP2/sun family protein [Polaribacter sp. MED152]
          Length = 404

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 154/460 (33%), Gaps = 76/460 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N        +  +  + +     ++             RD+  V   +   +R+ 
Sbjct: 1   MRLHRNLTFAVIDSIRDIFNEGVYADKAVEKALKRDKRWG--ARDRKFVAETIYDIVRWN 58

Query: 61  PRIDAVLDFVLISSLPRKKYS----LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                + +  +     R        +  +LR  +       + D+  +    E       
Sbjct: 59  RLYAEIAE--VKVPYDRDNIWRLFSVWCILR-GI------KLPDWNQIGDVPE------- 102

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
                       RR+     EL +       IP+W  E   +  G+E       A     
Sbjct: 103 ------------RRIKGRFAELSKTRKFRESIPDWMDELCVSELGEEVWTKEIAALNQQA 150

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227
            + L         E    KL    + T  +             ++     F  G + VQD
Sbjct: 151 SVILRTNTLNISKELLQKKLRTENVITQFVPDHPDALILEERANVFRTEAFHNGFFEVQD 210

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
           AS+ +          + V+D CA  GGKT  L   + +  +V A+D+ + +L KL+    
Sbjct: 211 ASSQLVAAYLDVKPGMKVVDTCAGAGGKTLHLSALMENKGQVIAMDIYESKLRKLKVRAK 270

Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           R   +  D+  +D+     K     D VL+DAPCS  G IRR+PD  W    + I     
Sbjct: 271 RNKAHNIDLRVIDSTKPIKKLHGKADRVLIDAPCSGLGVIRRNPDSKWKLQPEFIDNIKK 330

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-RSSPIPVELVPLNSAYWKSI 401
            Q+++L      VKPGG +V++ CS+   ++++ V + L   S      V  N       
Sbjct: 331 VQQEILQSYSKMVKPGGKLVYATCSILPSENQDQVNEFLTSESGKDFTFVSDNKVLA--- 387

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                     SG DGF+   L + 
Sbjct: 388 ------------------------HKSGFDGFYMALLEKK 403


>gi|150398714|ref|YP_001329181.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150030229|gb|ABR62346.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419]
          Length = 429

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 149/447 (33%), Gaps = 45/447 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L  + +++  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AIEVLDDIEKRKRPVADALRDWGLSHRFAG--SGDRAAIGNIVYDALRMKLSHAYLMD-- 65

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             S +         L    + +    DV            A    ++R   +  +  +  
Sbjct: 66  SDSPV--------ALAHAVLYRQWGFDV---------DTLAAEFADDRFAPEPPSEAMMT 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
              ++      +   + IPEW +   E  +  + +     A      +DL V     T  
Sbjct: 109 AFDQRRLEDAPLHVRADIPEWTQASFEENFSDDWLAEA-QALAGRPTLDLRVNTLKATRE 167

Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237
             L A+                           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KVLKALERSGAEPATIARHGVRIPAGEGASRLPNVTAEVSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD CA  GGK    +  + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 FPREGEQVLDYCAGGGGKTLAISAAMNNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E            D VLVDAPC+ TGT RR PD  W     ++ +    Q + L     F
Sbjct: 288 ETAGSLASLVGRADRVLVDAPCTGTGTWRRRPDTKWRLTQKNLEERLAQQEEALAGAARF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V+PGG +++  CS+  +++E  V      +P    L   ++                   
Sbjct: 348 VRPGGHLIYVTCSVLPEENESQVYGFCDDNPEFEVLSAADNWAALFGTDRPQPWSADM-- 405

Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL-RR 440
                   +   S+G DGFF   + R+
Sbjct: 406 ----KTVTLTPASTGTDGFFFCLMGRK 428


>gi|239814286|ref|YP_002943196.1| Fmu (Sun) domain protein [Variovorax paradoxus S110]
 gi|239800863|gb|ACS17930.1| Fmu (Sun) domain protein [Variovorax paradoxus S110]
          Length = 423

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 92/454 (20%), Positives = 152/454 (33%), Gaps = 60/454 (13%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ L+  V++       ++   + D        R++  +   V   LR     D +  
Sbjct: 8   EATADLVGLVLKFDHPADQVVSRFFRDHREFG--PRERATLAETVYTVLRKKLLFDHLSP 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
               S   R               IL        +     +  KR  +N    K  + + 
Sbjct: 66  SGSGSKERRMA-------------ILGFHGPRDFLKSALNDTEKRWLDNCDAVKPDDLLE 112

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
           R                  +PEW    L      +   A+ ++   P  +DL V      
Sbjct: 113 R--------------HRHNLPEWLVGPL-KAQLGDGFWALVESLQQPAPLDLRVNALTDK 157

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGT 239
                 +L    + +           I        L  FA G   VQD  + +   L   
Sbjct: 158 RAEVKAELAKAAIKSEATPFSPWGLRIDGKPALTKLDAFARGAVEVQDEGSQLLALLLDA 217

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292
                V+D CA  GGK       + +  ++ A D S  RL+ L+  L R  L        
Sbjct: 218 KRGEMVVDFCAGAGGKTLAIGATMRNTGRLYAFDTSAHRLDALKPRLARSKLSNVHPAAI 277

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             E D          D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L    
Sbjct: 278 AHERDDRIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQSVEELTVKQAAILQSAA 337

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG- 411
             +K GG +V++ CS+  +++E + +    ++P  V            ++   AL   G 
Sbjct: 338 RLLKSGGRLVYATCSVLPEENEAIAEAFSAANPDFVPQDAAELLQGLKVEGFEALCAGGA 397

Query: 412 ----WIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
               ++R+ P             DGFFA    R+
Sbjct: 398 DGRRYLRLWPH--------RHATDGFFAAVWNRK 423


>gi|114327812|ref|YP_744969.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315986|gb|ABI62046.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 428

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 96/461 (20%), Positives = 168/461 (36%), Gaps = 58/461 (12%)

Query: 1   MKSGMNARLVSS-HLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M     ARL ++  LL  +    R     + +  +    +  +   D+  V A     LR
Sbjct: 1   MTPS--ARLAAAITLLEEIEAAPRRPADAVANDFFRARRY--IGGSDRRAVSAQAWQVLR 56

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              R+   L      + PR   +   LL                         K     +
Sbjct: 57  ARRRMGWWL----PEAPPRLLVAGHMLL----------------TGWTLEAVTKAFSGGQ 96

Query: 119 HFAKLVNSILRR-----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +    +                       A    +P+W   R  + +G      +++   
Sbjct: 97  YAPARLTETEHTALRLLEGHTLDHPEMPDAVRLELPDWILPRFVDRFGPALAAELAEMES 156

Query: 174 SPL-YIDLTV-KFDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWV 225
                + + + K D +T    L A  +      L            + +   F +G+  +
Sbjct: 157 EAPLDLRVNLLKSDRDTARSALRAEGIEAEFTTLSPWGLRVHGRRPVTTGAAFRQGLIEI 216

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCN 282
           QD  + +   L G   ++ V+D CA  GGK    A  +++   + A D S+ RLE     
Sbjct: 217 QDEGSQLIAALVGAGPDMRVVDYCAGAGGKTLAMAMTMLNRGHIVACDTSEPRLEGAVRR 276

Query: 283 LDRLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           L R  ++  +       D +       FD VLVDAPC+ TGT RR+PD        D+++
Sbjct: 277 LRRAGVHNVERHLLTAGDKWVKRRAGSFDRVLVDAPCTGTGTWRRNPDGRLRLTETDLLE 336

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q  +L +  + ++PGG +V++ CS+  +++   ++  L   P    L+PL  A+  
Sbjct: 337 LVPKQADILDRAATLLRPGGRLVYATCSVLAEENTRQIEAFLARRP-EFRLMPLRQAWP- 394

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             D   AL+ +  + +TP           G DGFFA  L +
Sbjct: 395 --DAPAALTGD-MLSLTPRSF--------GTDGFFAAVLEK 424


>gi|260063220|ref|YP_003196300.1| putative sun protein [Robiginitalea biformata HTCC2501]
 gi|88783314|gb|EAR14486.1| putative sun protein [Robiginitalea biformata HTCC2501]
          Length = 405

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 146/455 (32%), Gaps = 72/455 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N        L  +  +      +++             RD+  +   V   +R+ 
Sbjct: 2   MRMHRNLVFAVWDGLDQIFNENAYADKVVEKLLRRDKRWG--SRDRGFIAETVYDMVRYR 59

Query: 61  PRIDAVL---DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                +           L R  +++  +LR                +    E A      
Sbjct: 60  RLYAEIAGVSAPYSRQDLGRM-FAVWAILR-------------GHTLPDWKEFAG----- 100

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                   +  RR+      L +  A    +P+W         G+        A      
Sbjct: 101 --------TPERRIKGRFDALQESRAVRESVPDWLDALGAESLGEAVWDRELRALNQQAE 152

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDA 228
           + L V       E     L+     T  I             ++     F  G + +QDA
Sbjct: 153 VVLRVNRLKASPEQVRESLSEAGFETAPISGYPDALRLLERANVFGSEAFRSGWFEIQDA 212

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+     L      + V+D CA  GGK+  L   + +  ++ ALD+   +L +L+    R
Sbjct: 213 SSQRVAPLLAPEPGMRVIDTCAGAGGKSLHLAALMENKGQILALDIYANKLRELKKRAKR 272

Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              +  +    E            D VL+DAPCS  G +RR+PD  W    + + +    
Sbjct: 273 AGAFNIETRPIESSKTLKRLAGSADRVLIDAPCSGLGVLRRNPDAKWKLRPEFVEELTRT 332

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +LL      +KPGG +V++ CS+   ++E+ V + L S                    
Sbjct: 333 QAELLNSYSQLLKPGGKLVYATCSILPGENEQQVARFLDS------------------GA 374

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             A   E   RI            SG DGF+   L
Sbjct: 375 GQAFRLEEEHRIL--------ACESGFDGFYLALL 401


>gi|170694011|ref|ZP_02885167.1| sun protein [Burkholderia graminis C4D1M]
 gi|170141083|gb|EDT09255.1| sun protein [Burkholderia graminis C4D1M]
          Length = 479

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 108/449 (24%), Positives = 184/449 (40%), Gaps = 27/449 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V     +L   L   +  +     +   +  V+ I   T+R L   + ++  +
Sbjct: 38  AAQAVGAVRL-GAALPAALQTVFVAAPEGSAAAA-RGAVQDIAYRTMRRLGTAEWLIAKL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  +L  ++A ++  + +     + VVD AV      +E      LVN+
Sbjct: 96  VKKAPP---PHVGHVLACALALLIDDEASAAYTPFTVVDQAVGAISARREFAFAKGLVNA 152

Query: 127 ILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LR   RE+     E           P W+ + +   + +     ++         + + 
Sbjct: 153 VLRNFLRERDALLTEAQADEVARWNYPTWWIDAVRRAWPEAWQDVLAAGNTQGPLTLRVN 212

Query: 182 VKFDI-ETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            +    E +   L     +         +   P  +  +PGF EGV  VQDA A +  QL
Sbjct: 213 ARHSTVEAYLQVLEDHHISASKVGDYAVMLATPMPVDRIPGFNEGVVSVQDAGAQLAAQL 272

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291
            G  + + VLD CAAPGGKT  L+  +  ++ AL+    R  ++  NL RL L AE    
Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKLEAEVRIG 332

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           D      +     + FD +L D PCS++G +RRHPD+ W R   DI      QR++L   
Sbjct: 333 DAGAPSKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVDEQRRILGAL 392

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VKPGG +++  CS+  ++ E   Q         V L         S+  A A +  G
Sbjct: 393 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL-DAPGQLLPSVARAPADTSAG 451

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 +  +   G +S  DGFF    ++
Sbjct: 452 SH--AGEFADISAGANSDHDGFFYARFQK 478


>gi|257063705|ref|YP_003143377.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM
           20476]
 gi|256791358|gb|ACV22028.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM
           20476]
          Length = 531

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 92/440 (20%), Positives = 160/440 (36%), Gaps = 33/440 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR+ +      V  +   ++ ++      S    +   D      +    +     +D 
Sbjct: 95  PARIAACLSCRIVRERDAFVSEVVPGVV--SRMGPMKPEDVAFATRLARGVVATSGALDD 152

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK------RDKENRH 119
            ++  L S     + +++  LRVS  ++LYL   DY  VD  VE         R   N  
Sbjct: 153 FINRNLYSPAD-IQPNVRDALRVSAYELLYLKKDDYVAVDQGVELVAYVEPKARALANAV 211

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             K+  +  R    +    +  ++     P W  +RL    G+E+  A  +A      + 
Sbjct: 212 LRKMARTASRWPFGDVGTDVVALSRKVAFPSWMAKRLVEEMGREQAAAFMEASNGDAPVH 271

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKEL---------PESIVS---LPGFAEGVWWVQD 227
             V     T    L  +        L E          P++I S      F +G   + D
Sbjct: 272 AAVNAIRATDEEVLAVLQEQGADPNLVEGIPGCIRIGTPKAIRSDVVTKLFEDGKVLISD 331

Query: 228 ASASIPVQLFGT-LNNLSVLDLCAAPGGKTAQLIVSGAKVT-------ALDVSKRRLEKL 279
            SA              + +++ +  G KT  +  +  +         ++D    + + L
Sbjct: 332 PSAQKVASFALPGEPPSAFIEVGSGRGTKTVLMQSNAMRKYGKQFPIVSVDDHPFKAKLL 391

Query: 280 RCNLDRLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           R       L +      D         K  FDAV VDAPCS  GT+RRHP++ W     D
Sbjct: 392 RNRAREYGLTSVQTKVADGRKLTSLYEKGSFDAVFVDAPCSGVGTLRRHPEIRWRLTERD 451

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNS 395
           + K A  Q  +L+   S VK GG VV+S C++ ++++E VV++ L+       E+  +  
Sbjct: 452 VAKMADVQLDILIDAASLVKTGGQVVYSTCTVFREENERVVERFLKTKFGERFEMTEMLK 511

Query: 396 AYWKSIDMAMALSPEGWIRI 415
              +        +     R 
Sbjct: 512 MSLEEDGPDAHFAVRLTKRF 531


>gi|207721448|ref|YP_002251889.1| cytosine-c5-methylase [Ralstonia solanacearum MolK2]
 gi|206586608|emb|CAQ17195.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia
           solanacearum MolK2]
          Length = 417

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 92/446 (20%), Positives = 171/446 (38%), Gaps = 55/446 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + + +   L  R++ ++       LR              
Sbjct: 11  KVLARLLHFAAPADMVVSQYFREHS--ELGHRERGIIAEAAFAVLRRKVEF----GQFAE 64

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S       + ++L+ + + Q      A    +   +   + +  +R       ++  RV 
Sbjct: 65  SG---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPPEAEWLDRWAIIDRTALAPRV- 115

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                        + +P+W  + L   +G+    A++ A ++P  +DL V     + E  
Sbjct: 116 ------------RANLPDWLFDALVAQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAV 163

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +      L  +   +   P       F  G   VQD  + +  QL       
Sbjct: 164 LATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 223

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D CA  GGKT  +   + S  ++ ALDVS++RL  L   L R  L       +D+  
Sbjct: 224 MVVDFCAGAGGKTLAIGAAMRSTGRLYALDVSEKRLANLGPRLARSGLSNVHPARIDSEH 283

Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K
Sbjct: 284 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 343

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CS+  +++++VV++ L      V +        + I + M      ++ + 
Sbjct: 344 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELY 399

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P +           DGFFA  L R  
Sbjct: 400 PQV--------HQTDGFFAAVLERRA 417


>gi|294670899|ref|ZP_06735755.1| hypothetical protein NEIELOOT_02603 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307386|gb|EFE48629.1| hypothetical protein NEIELOOT_02603 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 421

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 163/446 (36%), Gaps = 55/446 (12%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + LL+ ++  R     +    + +     L ++D+  +       +R   +I AVL    
Sbjct: 10  ADLLAELLTFRQPADAVTSAFFRNRR--KLGRQDRAEIAETAFAAIRHYQKISAVL---- 63

Query: 72  ISSLPRKKYSLQQLLRVS-VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                + + +    L +     I  LD             A        F+  +N+    
Sbjct: 64  RRPAAQARKAALAALVLGRGFNISRLDNLADDE--EKTFLAALKARKTEFSNGLNTAAE- 120

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
                            +P+W  + + + +  + +L    +   P  +DL V       +
Sbjct: 121 -----------------LPQWLIDTMRSDFSDQDILNFGRSTACPAPLDLRVNALKAKRD 163

Query: 188 TWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
               +L    LP                 ++     F +G   VQD  + +   L G   
Sbjct: 164 KILAELQTEGLPAEATPFSPWGIRLYDKSALGKHSRFLDGTLEVQDEGSQLVALLLGAKR 223

Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294
              ++D CA  GGK      +  +  ++ A D++++RL  L+  + R  L          
Sbjct: 224 GEIIVDFCAGAGGKTLAVGAMTANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGS 283

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D      K   D VLVDAPCS  GT+RR+PD+ + +  + + K A  Q  +L      
Sbjct: 284 EHDPRLGRLKGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETLAKLAEQQHSILNAAAEL 343

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VKP G +V++ CS+  Q++E  +++ LR  P       LN A           +      
Sbjct: 344 VKPQGRLVYATCSILPQENEGQIERFLREHPDF---EALNCADLPGSPKISPDT------ 394

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
                  K+D    G DGFFA  L+R
Sbjct: 395 ---GTYLKLDTAVHGTDGFFAAVLQR 417


>gi|225025486|ref|ZP_03714678.1| hypothetical protein EIKCOROL_02386 [Eikenella corrodens ATCC
           23834]
 gi|224941770|gb|EEG22979.1| hypothetical protein EIKCOROL_02386 [Eikenella corrodens ATCC
           23834]
          Length = 420

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 95/448 (21%), Positives = 160/448 (35%), Gaps = 62/448 (13%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL  V+        L+   +       L ++D+  +   V   LR L +    +  VL  
Sbjct: 12  LLGQVLSFEQPADALVSAYFRSHK--KLGRQDRHEIAETVFAALRHLQK----IQSVLPE 65

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            + + + +    L +                        R       A   N+       
Sbjct: 66  PVRQSRRAALAALVLG-----------------------RGISISALADCTNAEETEFLG 102

Query: 134 EKIELLQRIAGI----SIIPEWFKERLENF-YGKERVLAISDACISPLYIDLTVKF---D 185
                    AG     + +PEW   +L    +  E +LA   +  +P  +DL V      
Sbjct: 103 YLKAKKTEFAGQLNTAAELPEWLIAQLRAQGWNDEHILAFGRSTATPAPLDLRVNTLQAK 162

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLFGT 239
            +    +L +  +             +         P F EG   VQD  + +  +L G 
Sbjct: 163 RDKVLAQLQSEGIRCEATPYSPWGIRLYDKSALMCHPLFLEGTIEVQDEGSQLLARLTGA 222

Query: 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
                ++D CA  GGKT      + +  ++ A DV+++RL KL+  + R  L        
Sbjct: 223 RRGEIIVDFCAGAGGKTLALGAAMNNSGRLYAFDVAEKRLAKLKPRMVRAGLTNISPQRI 282

Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             E D          D VLVDAPCS  GT+RR+PD+ + +  + I + A  Q  +L    
Sbjct: 283 GSETDPRLERLIGKADRVLVDAPCSGLGTLRRNPDLKYRQSPERITELAKQQAAILEAAA 342

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             V PGG +V++ CS+   ++E+  ++   + P       L +A     D     S   +
Sbjct: 343 RLVHPGGRLVYATCSVLATENEQQAERFSAAHPDWQ----LANAAELLPDCPELFSGSPY 398

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +++               DGFFA    R
Sbjct: 399 LQL--------STAEHRTDGFFAAVWTR 418


>gi|18977038|ref|NP_578395.1| nol1-nop2-sun family putative nucleolar protein IV [Pyrococcus
           furiosus DSM 3638]
 gi|18892673|gb|AAL80790.1| putative nucleolar protein IV (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 452

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 93/438 (21%), Positives = 169/438 (38%), Gaps = 41/438 (9%)

Query: 30  DLEYGDSAFRLLSQRDQIL---VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL 86
                  AF+    ++  L   +  I    ++    ID  +  V+  +       L+  L
Sbjct: 32  SQYAKREAFKKHDIKEAWLNRVLTMIFYDIMKKQGLIDKAIKDVVGVTPLILDPWLRAAL 91

Query: 87  RVSVAQILYLDVADYAVVDLAVEQAKRD---KENRHFAKLVNSILRRVSREKIELLQ--- 140
           RV+   +L+ D  +   +     +A      K + +       I  R+   K        
Sbjct: 92  RVAFDVVLFHD-PNQNTLKNLKWKASDFISSKTHPYVGMYYWDIFERILEYKPNPKTELE 150

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200
           R+    + P W  ER+    G E             +I + V     T    +       
Sbjct: 151 RLEWEYLAPAWLIERVRKLLGDETKAFFEAVNRKHEWISIRVNTLKTTPEEVIKEFEEEG 210

Query: 201 GGIRLKELPESIVSLPG---------FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
             +   +    ++ + G         F +G   VQ+ ++++   +        V+DL AA
Sbjct: 211 VEVVQSKRIPVVLKIKGPYDFDSSYLFRKGKIIVQEEASAVASVILDPKPGEVVVDLAAA 270

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KK 305
           PGGKT  +   + +  K+ A D+ K R+++L+  + R+ +     I  DA        ++
Sbjct: 271 PGGKTTHMAELMKNRGKIFAFDIDKARMKRLKDFVSRMGIKIVKPIVKDARKAPEILGEE 330

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
           + D V++DAPC+S+GTI ++P++ W      I + A  QR+LL      VKPGG ++++ 
Sbjct: 331 VADRVMLDAPCTSSGTIGKNPELRWRLREQKIEEMAQLQRELLESAAKLVKPGGRLLYTT 390

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+  ++ E+ V   L +      LV L+  Y            EG +R  P        
Sbjct: 391 CSIFIEEDEDNVSWFLETYK-EFRLVKLSGPYDPGF-------LEGTMRAWPH------- 435

Query: 426 VSSGMDGFFAVALRRLIQ 443
                 GFF     ++ Q
Sbjct: 436 -RHETIGFFYALFEKVTQ 452


>gi|332976014|gb|EGK12885.1| rRNA (cytosine-C(5)-)-methyltransferase [Psychrobacter sp.
           1501(2011)]
          Length = 530

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 116/530 (21%), Positives = 210/530 (39%), Gaps = 108/530 (20%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R+   + L  + + +            D     L   D+    A++  TLR     + 
Sbjct: 17  NVRVAVINTLLAIQQGQS------LSSLLDPLLNSLKGEDKGFAHALLLTTLRHWYATER 70

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +LD +  + +   +  ++  ++V + Q+LYL+VAD+A +   VE  K     R  + LVN
Sbjct: 71  LLDSLSDNPIDEIE--VRTTIQVGITQLLYLNVADHAAIHETVEAVKHIDLAR-ASGLVN 127

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +ILR+V++   +  ++      +P W  ++L+  +  E    ++ +      + L V   
Sbjct: 128 AILRKVAKNPNKFRKKANKNHSLPNWLAQQLKADWR-ENYNELTQSLRQSAAMFLRVNPL 186

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE---------------------SIVSLPGFAEG 221
             D E++  +L    +    + L+   +                      +  LP F EG
Sbjct: 187 QSDSESYLSQLAEAEIAAELVSLETSIKTDTADELVEIKQQLIELIDSVPVSHLPEFEEG 246

Query: 222 VWWVQDASASIPVQLFG----------TLNNLSVLDLCAAPGGKTAQL------------ 259
           +  VQDA A +   +                + +LD CAAPGGK A              
Sbjct: 247 IASVQDAHAQLAAPIINALLQKAVTANPKEKVRLLDACAAPGGKLAHWLELLGVQESEQT 306

Query: 260 ----------------IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI---------- 293
                            +S  ++TA+D    R+ ++  NL+RL L A  +          
Sbjct: 307 GLFHVKQDDELNTDTTNISKVELTAIDNEAPRITRIFENLERLQLPAPIVNSKLHLDIEC 366

Query: 294 -----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                 +    D      FDA+L+DAPC++TG IRRHPD+   R  +D+  +A  Q ++L
Sbjct: 367 VDATSWQAQPTDKDSDSGFDAILLDAPCTATGVIRRHPDITLLRTEEDVQHTAQLQEQIL 426

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG  ++  CS+ KQ++ E +Q  L+     V +   +      I+ A+   
Sbjct: 427 DNLWPQLKVGGYFLYVTCSILKQENVEQMQAFLKRHMDAVAVAFDDEQTNWGIEQAVG-- 484

Query: 409 PEGWIRITP---------------DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                +  P               D  ++I   ++G DGF+   L+++  
Sbjct: 485 ----RQCLPIYKVSESLEPTAVDQDSEQQIATPAAGGDGFYYAVLKKVST 530


>gi|296446291|ref|ZP_06888237.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b]
 gi|296256192|gb|EFH03273.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b]
          Length = 430

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 149/458 (32%), Gaps = 47/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    +    +  +L+ +  +R      +        F     +D+  +  +V   LR  
Sbjct: 1   MTPAAHI-SAAIEILAELSARRRPAADAIKDWGLSHRFAG--SKDRAAIAGLVFDALRKR 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                V+               + ++  ++ +   L     A +      A         
Sbjct: 58  ASAAHVMGEETP----------RAVMLGALREARGLAGEAIAALCSGEGHAPAPLSEEER 107

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            +L N+ L                    PEW  ER    +G +       A  +   +DL
Sbjct: 108 ERLANATLADAPAHV---------RGDYPEWLAERFAEAFG-DAAEEEGRALAARAPLDL 157

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDA 228
                  +    +  +                          ++ + P F +G    QD 
Sbjct: 158 RANILKSSREDAMRRLAHLHPEPTPLSPLGLRLPAGPSGRGPALAAEPAFVKGHVEPQDE 217

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
            + +   L        VLD CA  GGKT   A  + +  ++ A D   RRL  +   L+R
Sbjct: 218 GSQLAALLCAAEPGEQVLDYCAGGGGKTLALAGQMHNRGQIYAFDDDGRRLTPIYPRLER 277

Query: 286 LHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
                  +             +   D VL+DAPC+ TGT RRHPD  W      +     
Sbjct: 278 AGARNVQVRAPRGGADMLADLEARCDLVLIDAPCTGTGTWRRHPDAKWRLAPGALAARLE 337

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR+LL +   +V+PGG +V+  CSL + ++E  +   L        +    +A    + 
Sbjct: 338 EQRELLAKAPLYVRPGGRLVYVTCSLLRDENEAQIAAFLAEHSGFAAVPAEEAAAAAQLP 397

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +    +        ++    SG DGFF   +RR
Sbjct: 398 ELARFASSLGL------GLRLTPRVSGTDGFFVCVMRR 429


>gi|20095011|ref|NP_614858.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19888274|gb|AAM02788.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 431

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 103/448 (22%), Positives = 179/448 (39%), Gaps = 48/448 (10%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LP 76
           +  +  SL   L           +  R    V+A+ +  +R L  +D VL+ VL  S + 
Sbjct: 1   MEERGHSLKAALRNALR-----GIGGRRHRFVQALAHELVRVLGNVDLVLNRVLRGSTVE 55

Query: 77  RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                L+  LRV   +I +       V    V+  K     +H A+  N+ILR+V R   
Sbjct: 56  DLHPYLRNALRVGTWEIHWRREHPGPVTKAVVDVVKERVGPKH-ARFANAILRQVERVNP 114

Query: 137 --------ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDLTVKF--- 184
                   +   R A     P+W+ E + + +   + +    +AC       + V     
Sbjct: 115 EEVISSIRDPTARFAARYNFPKWYVELVRSAFDSMDELRKFLEACNRRPARYVRVNTLVS 174

Query: 185 DIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           D E    +L    +             ++     ++  P F +G  + Q  +++      
Sbjct: 175 DPEEVVRRLKRRGIEAERDPDVPDVLRIRSAETPVIKTPEFKKGEVYPQTKASAAVAHAA 234

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--- 291
                ++V+DLCAAPGGKT  L   +    ++ A+D+  +R   L+  + + H       
Sbjct: 235 EPEPGMTVVDLCAAPGGKTTHLAQLMEGRGEIIAIDMHPKRFGTLKKRVRQFHADDIVET 294

Query: 292 -DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLL 349
             +   DA D   + + D VLVD PC+ TG++   P+  W R  T +  K A  Q +LL 
Sbjct: 295 LCMDARDAPDQLGEGIADLVLVDPPCTGTGSVYSKPEKRWDRETTGEPTKWAQLQWELLK 354

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
             +  +KPGG +V+S CS+   ++E ++++++R     +ELV +   +            
Sbjct: 355 VAVRLLKPGGRIVYSTCSITLTENERLIERLVRRYRG-LELVDVPLEWASPGVRMPEA-- 411

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVA 437
               RI P             DGFF   
Sbjct: 412 ---RRIWPH--------RHDTDGFFVAR 428


>gi|163757566|ref|ZP_02164655.1| Sun protein [Hoeflea phototrophica DFL-43]
 gi|162285068|gb|EDQ35350.1| Sun protein [Hoeflea phototrophica DFL-43]
          Length = 430

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 160/449 (35%), Gaps = 43/449 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L+ +  +   +   L        F      D+  +  +V+  LR       +++
Sbjct: 8   QAAIEVLTEIETRHRPVPDGLKDWGLSHRFAG--SGDRAAISNLVHDALRMKLSHGFMMN 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                       ++  LLR             + +     E     + +R   ++ ++  
Sbjct: 66  -----GDAPADLAVATLLR------------QWRISPE--ELTATLEGDRFAPEIPSAES 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
                 +          + IPEW     E  +G E     + A  S   +DL V     +
Sbjct: 107 LADCLARDLAQAPAHVRADIPEWLAGSFERAFGPEW-ELEAQALTSRPPLDLRVNTLLSN 165

Query: 186 IETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            +              +L    +        +   +  S   FA G + +QD  + +   
Sbjct: 166 RDQVLEAFSDRDPKPTRLAPFGVRFEAGEGPQRQIAAASEVSFARGWFEIQDEGSQLAAG 225

Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L        VLD CA  GGK    A ++ +  ++ A D  +RRL  +   + R      D
Sbjct: 226 LVDAQPGEDVLDYCAGGGGKSLAFAAMMNNEGRIFAYDADRRRLAPMVERMRRAGADIID 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           I E  A     +   D VL+DAPC+ TGT RR PD  W     +I      Q K+L    
Sbjct: 286 IRERAADLNGLESKMDRVLIDAPCTGTGTWRRRPDAKWRISEKNITDRMADQDKVLDAAC 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
           ++V+PGG + +  CSL  +++ + V+  L+  P   E + L   +      + A  P   
Sbjct: 346 AYVRPGGELAYVTCSLLPEENTDRVKAFLQRHP-EFETISLKQRWRSVAADSEAPVPYAD 404

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++   +    +G DGF+    RR 
Sbjct: 405 Q----NLGLLLSPRRTGTDGFYFAGFRRK 429


>gi|187929791|ref|YP_001900278.1| Fmu (Sun) domain-containing protein [Ralstonia pickettii 12J]
 gi|187726681|gb|ACD27846.1| Fmu (Sun) domain protein [Ralstonia pickettii 12J]
          Length = 465

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 160/449 (35%), Gaps = 61/449 (13%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + +     L  R++ ++       LR              
Sbjct: 59  KVLARLLHFAAPADMVVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 112

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                            A   L +    +       A  +N +     
Sbjct: 113 SGT------------------------GPARRRLVLLGLLQTAGREAIAPFLNPVEAEWL 148

Query: 133 REKIELLQRIAGIS---IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
                  +          +P+W  + L   +G E   A++ A ++P  +DL V     + 
Sbjct: 149 DRWENRDRAALAARVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGER 208

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240
           +     L    +      L  +   +   P       F  G   VQD  + +  QL    
Sbjct: 209 DAVLATLAEAGIEGSAAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPK 268

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               V+D CA  GGKT  +   + S  ++ A DVS++RL  L   L R  L       +D
Sbjct: 269 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLSNLGPRLARSGLSNVHPGRID 328

Query: 298 AFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           +             D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L     
Sbjct: 329 SEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAAR 388

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +KPGG +V++ CS+  +++++VV++ L +    V +        + I + M      ++
Sbjct: 389 LLKPGGRLVYATCSVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGP----YL 444

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            + P         +   DGFFA  L R  
Sbjct: 445 ELYPH--------THQTDGFFAAVLERRA 465


>gi|319792067|ref|YP_004153707.1| fmu (sun) domain protein [Variovorax paradoxus EPS]
 gi|315594530|gb|ADU35596.1| Fmu (Sun) domain protein [Variovorax paradoxus EPS]
          Length = 423

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 147/458 (32%), Gaps = 68/458 (14%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ L+  V++       ++   + D        R++  +   V   LR     D +  
Sbjct: 8   EATADLVGLVLKFDHPADQVVSRFFRDHREFG--PRERATLAETVYTVLRKKLLFDHL-- 63

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF-AKLVNSI 127
                                            +               R F    +N  
Sbjct: 64  -----------------------------SPSGSGSKERRMAILGFHGPRDFLKSALNDT 94

Query: 128 LRRVSREKIELLQRI---AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
            +R       +            +PEW    L+   G +    + ++   P  +DL V  
Sbjct: 95  EKRWLDNCDAVKPEDLLERHRHNLPEWLVAPLKTQLG-DGFWPLVESLQQPAPLDLRVNA 153

Query: 185 ---DIETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQ 235
                     +L    + +           I        L  FA G   VQD  + +   
Sbjct: 154 LTDKRAEVKAELAKAAIKSEVTPFSPWGLRIEGKPALTKLDAFARGAVEVQDEGSQLLAL 213

Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L        V+D CA  GGK       + +  ++ A D S  RL+ L+  L R  L    
Sbjct: 214 LLDAKRGEMVVDFCAGAGGKTLAVGATMRNTGRLYAFDTSAHRLDALKPRLARSKLSNVH 273

Query: 293 ----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                 E D          D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L
Sbjct: 274 PAAIAHERDDRIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPKSVEELTVKQTAIL 333

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 VK GG +V++ CS+  +++E + +    ++P    +          ++   AL 
Sbjct: 334 QSAARLVKSGGRLVYATCSVLPEENEAIAEAFSAANPDFEPVDAAELLQGLKVEGFEALC 393

Query: 409 PEG-----WIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
             G     ++R+ P             DGFFA    R+
Sbjct: 394 AGGADGRRYLRLWPH--------RHSTDGFFAAVWNRK 423


>gi|319404603|emb|CBI78209.1| SUN-family protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 428

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 149/438 (34%), Gaps = 25/438 (5%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +          L        F  ++  D+  +  IV   LR    +   +D
Sbjct: 8   QAAIDILQEIETYYRPAGEALKDWGLSHRFAGVN--DRAAIGTIVYDALRRRYSLQWRMD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                       +++ ++  ++     L +     V      A +    +         L
Sbjct: 66  S----------NNIRDVVFGTLFDSGMLTIEQVDKVLEGDRFAPQLLAPQQRKAWQQRQL 115

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185
                     + +     + P +    ++          +    ++  +     L     
Sbjct: 116 VNAPDYIRADIPQWCKAHLYPLFADNWIKEAAALATRPPLDLRVNSLKATPKKVLKALEK 175

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            +          L    I   E   ++ + P F +G + +QD  + +   L      + +
Sbjct: 176 TKVKPFSWFQQALRIEPIEKFERHPNVQAEPAFQKGYFEIQDLGSQLVSYLVEAKAGMQL 235

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD CA  GGKT   A  + +  ++ A D  K RL  +   L R  ++             
Sbjct: 236 LDYCAGAGGKTLALAANMENRGQIYAYDSEKIRLAPIFNRLQRAGIHNVQPRVYKEELKS 295

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                D VL+D PCS TGT RRHPD  W      + +    Q  +L + + ++KPGG +V
Sbjct: 296 LIGQMDIVLLDTPCSGTGTWRRHPDAKWRLTLQKVQQRQEEQFAILNEALIYIKPGGRLV 355

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CSL   ++EE + + L+     +   P+N         + ++          D    
Sbjct: 356 YITCSLFNDENEEQISRFLQKHSNFL---PINMQKLWYRHFSSSI----MQPAFSDYGLT 408

Query: 423 IDGVSSGMDGFFAVALRR 440
           +   ++  DGFF   L++
Sbjct: 409 LSPAATKTDGFFLSILQK 426


>gi|294788211|ref|ZP_06753454.1| putative ribosomal RNA small subunit methyltransferase B
           [Simonsiella muelleri ATCC 29453]
 gi|294483642|gb|EFG31326.1| putative ribosomal RNA small subunit methyltransferase B
           [Simonsiella muelleri ATCC 29453]
          Length = 425

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 171/447 (38%), Gaps = 53/447 (11%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           +++L+ ++        +L     +   + L + D+  +       LR   +I AVL    
Sbjct: 10  ANVLATMLTFDQPADVVLSNYLRE--QKKLGRNDRHEIAETAFAALRHYEKIVAVL---- 63

Query: 72  ISSLPRKKYSLQQLLRVS-VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                + + +    L +     I  L+       +     +        F+  +N+    
Sbjct: 64  RRPYVQSRKTALAALVLGRSFNISQLEDLLNEDDNEKEFLSNLKARKSEFSGSLNTASE- 122

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
                            +PEW   +L+  + +E +L    +   P  +D+ V       +
Sbjct: 123 -----------------LPEWLINQLKQNFNEEEILQFGRSVAQPAPLDVRVNTLNGKRD 165

Query: 188 TWAHKLN-----AVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
               +L      A+  P     ++   +  +     F  G   VQD  + +  QL G   
Sbjct: 166 KVLAQLQTEFPQAIATPFAPHGIRFPDKPALNKHELFLNGTLEVQDEGSQLLAQLVGAKR 225

Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294
              V+D CA  GGK       + +  ++ A D++++RL  L+  + R  L          
Sbjct: 226 GEIVVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPEKISS 285

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D          D VLVDAPCS  GT+RR+PD+ + +  + I K    Q+ +L    + 
Sbjct: 286 ENDPRITRLHGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETIAKLIQQQQNILQAASAL 345

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V  GG +V++ CS+  ++++  V+  L  +P   EL+  +          + L+   +++
Sbjct: 346 VASGGRLVYATCSVLPEENQHQVEHFLTHNP-EFELLDCSQLLAA---QKIDLNTGKYLQ 401

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +        +  +   DGFFA  L+R 
Sbjct: 402 L--------NTATHHTDGFFAAVLQRK 420


>gi|207742571|ref|YP_002258963.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia
           solanacearum IPO1609]
 gi|206593964|emb|CAQ60891.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia
           solanacearum IPO1609]
          Length = 406

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 172/445 (38%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L+ ++        ++   + + +   L  R++ ++       LR              S
Sbjct: 1   MLARLLHFAAPADMVVSQYFREHS--ELGHRERGIIAEAAFAVLRRKVEF----GQFAES 54

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                  + ++L+ + + Q      A    +   +  ++ +  +R       ++  RV  
Sbjct: 55  G---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPSEAEWLDRWAIIDRTALAPRV-- 104

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L   +G+    A++ A ++P  +DL V     + E   
Sbjct: 105 -----------RANLPDWLFDALVVQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAVL 153

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +      L  +   +   P       F  G   VQD  + +  QL        
Sbjct: 154 ATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGEM 213

Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CA  GGKT  +   + S  ++ ALDVS++RL  L   L R  L       +D+   
Sbjct: 214 VVDFCAGAGGKTLAIGAAMRSTGRLYALDVSEKRLANLGPRLARSGLSNVHPARIDSEHD 273

Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K 
Sbjct: 274 AKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLKA 333

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+  +++++VV++ L      V +        + I + M      ++ + P
Sbjct: 334 GGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELYP 389

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            +           DGFFA  L R  
Sbjct: 390 QV--------HQTDGFFAAVLERRA 406


>gi|154244404|ref|YP_001415362.1| Fmu (Sun) domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158489|gb|ABS65705.1| Fmu (Sun) domain protein [Xanthobacter autotrophicus Py2]
          Length = 433

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/459 (20%), Positives = 163/459 (35%), Gaps = 47/459 (10%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L+ +  +R      L        F      D+  +  IV  TLR 
Sbjct: 1   MIP--AARISAAIEVLTDLTTRRRPAADALKDWGLSHRFAG--SGDRAAIAGIVYDTLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 V+           +  +  +L +    +  LD    A +      A        
Sbjct: 57  RASAAHVMGS------EEPRALVLGMLVL----MRGLDGEAIAALADGSRFAPAPLTEDE 106

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A+L +  ++                   P+W    L + +G++ V+A   A  +   +D
Sbjct: 107 RARLADPSIKGAPPFV---------RGDYPQWLHASLRHVFGED-VVAEGAALATRAPLD 156

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGI---------RLKELPESIVSLPGFAEGVWWVQD 227
           L V     + E    +L+ +    G             +     + + P F  G   VQD
Sbjct: 157 LRVNTLKGEPEAVRAELSHLNPAPGRFSPLALRILLDSEGKAPPVSAEPAFLRGEVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
             + I   L   +    VLDLCA  GGKT +    + +  ++ A D   RRL+ +   L 
Sbjct: 217 EGSQIAAILARPVPGSQVLDLCAGAGGKTLEFAALMDNKGQLYAHDSDIRRLKPMHERLA 276

Query: 285 RLHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  +    +      +   +  +   D VLVDAPC+ TGT RR+PD  W      + +  
Sbjct: 277 RAGVRNVQVRSPRGAEDVLHDLEGRMDLVLVDAPCTGTGTWRRNPDAKWRVRPGALAQRT 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q K+L +   +V+PGG + +  CSL  +++   V+ +L        + P  +      
Sbjct: 337 AEQAKILEEAAHYVRPGGRLAYVTCSLLDEENGAQVRALLSKREDFHVVPPNETVLSLGA 396

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       R        +    +G DGFF   ++R
Sbjct: 397 HGQALADAALTSR----EGILMTPRRTGTDGFFVSVMKR 431


>gi|241663918|ref|YP_002982278.1| Fmu (Sun) domain-containing protein [Ralstonia pickettii 12D]
 gi|240865945|gb|ACS63606.1| Fmu (Sun) domain protein [Ralstonia pickettii 12D]
          Length = 465

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/446 (20%), Positives = 165/446 (36%), Gaps = 55/446 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + +     L  R++ ++       LR              
Sbjct: 59  KVLARLLHFAAPADMVVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 112

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S     +  L  L          L  A    +   +  A+ +  +R              
Sbjct: 113 SGTGPARRRLVLL--------GLLQTAGREAIAPFLNPAEAEWLDRW------------- 151

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
             +          + +P+W  + L   +G E   A++ A ++P  +DL V     + +  
Sbjct: 152 ENRDRAALAARVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGERDAV 211

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +      L  +   +   P       F  G   VQD  + +  QL       
Sbjct: 212 LATLAEAGIEGVAAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 271

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D CA  GGKT  +   + S  ++ A DVS++RL  L   L R  L       +D+  
Sbjct: 272 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLSNLGPRLARSGLSNVHPGRIDSEH 331

Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K
Sbjct: 332 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 391

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V++ CS+  +++++VV++ L +    V +        + I + M      ++ + 
Sbjct: 392 PGGRLVYATCSVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGP----YLELY 447

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P         +   DGFFA  L R  
Sbjct: 448 PH--------THQTDGFFAAVLERRA 465


>gi|332520891|ref|ZP_08397351.1| Fmu (Sun) domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043421|gb|EGI79617.1| Fmu (Sun) domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 406

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/456 (18%), Positives = 156/456 (34%), Gaps = 66/456 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L  +  +      ++              RD+  V       +R+ 
Sbjct: 1   MRLHRNLCFATVDGLLLIFNEGNYADKVVQQLLKRDKRWG--SRDRGFVAETTYDIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + +  +     R         R+                   V    +  +   +
Sbjct: 59  RLYAEIAN--VKEPFSRDDIW-----RLFA-----------------VWATLKGIKLPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
               N+  R++     EL +        P+W  E      G+      + A      + L
Sbjct: 95  KYFENTPTRKIKGRFDELSKIRKIKESFPDWIDELAAKELGENLWNKEAAALNEQADVIL 154

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
                    E    +L  +   T  I+            ++ +   F +G + VQDAS+ 
Sbjct: 155 RTNTLKTTKEKLKSELFDLDFDTEEIKGYPDALKLKERANVFTTDAFKKGWFEVQDASSQ 214

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +  +     + + V+D CA  GGKT  +   + +  +V A+D+ + +L +L+    R   
Sbjct: 215 LVAEFLDVKSGMKVVDTCAGAGGKTLHIAALMENKGQVIAMDIYENKLRELKRRAKRAGA 274

Query: 289 YAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  ++  +D+     K     D VL+DAPCS  G +RR+PD  W  +   + +    QR+
Sbjct: 275 HNIEMRTIDSTKPIKKLYDKADRVLIDAPCSGLGVLRRNPDAKWKLEASFLDRIKNTQRE 334

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      VKPGG +V++ CS+   +++E V+  L                         
Sbjct: 335 ILSSYSRMVKPGGKLVYATCSILPSENQEQVKHFL----------------TSESGKDFT 378

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              E          +KI    SG DGF+   L R  
Sbjct: 379 FVKE----------KKILSHESGFDGFYMALLERKT 404


>gi|207723586|ref|YP_002253985.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia
           solanacearum MolK2]
 gi|206588788|emb|CAQ35751.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia
           solanacearum MolK2]
          Length = 406

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 171/445 (38%), Gaps = 55/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L+ ++        ++   + + +   L  R++ ++       LR              S
Sbjct: 1   MLARLLHFAAPADMVVSQYFREHS--ELGHRERGIIAEAAFAVLRRKVEF----GQFAES 54

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                  + ++L+ + + Q      A    +   +   + +  +R       ++  RV  
Sbjct: 55  G---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPPEAEWLDRWAIIDRTALAPRV-- 104

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190
                       + +P+W  + L   +G+    A++ A ++P  +DL V     + E   
Sbjct: 105 -----------RANLPDWLFDALVAQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAVL 153

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244
             L    +      L  +   +   P       F  G   VQD  + +  QL        
Sbjct: 154 ATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGEM 213

Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CA  GGKT  +   + S  ++ ALDVS++RL  L   L R  L       +D+   
Sbjct: 214 VVDFCAGAGGKTLAIGAAMRSTGRLYALDVSEKRLANLGPRLARSGLSNVHPARIDSEHD 273

Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K 
Sbjct: 274 AKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLKA 333

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+  +++++VV++ L      V +        + I + M      ++ + P
Sbjct: 334 GGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELYP 389

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            +           DGFFA  L R  
Sbjct: 390 QV--------HQTDGFFAAVLERRA 406


>gi|163788936|ref|ZP_02183381.1| putative sun protein [Flavobacteriales bacterium ALC-1]
 gi|159876173|gb|EDP70232.1| putative sun protein [Flavobacteriales bacterium ALC-1]
          Length = 403

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 155/455 (34%), Gaps = 66/455 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N        L  +  +      ++              RD+  V   V   +R+ 
Sbjct: 1   MRLHRNLCFAVIDGLHLIFNEGEYADKVIQQLLKRDKRWG--SRDRGFVAETVYSIVRYQ 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + +  + +   R         R+                   V    +      +
Sbjct: 59  RLYAKIAN--VKAPYHRDDLW-----RMFA-----------------VWVTLKGIILPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
               ++  R++     EL +       IP+W  E      G+               + L
Sbjct: 95  KYFTDTPTRKIKGRFDELSKIRKYRESIPDWIDELGVKELGEAEWTKEIAKQNEQADVIL 154

Query: 181 TVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V            KL +  + T  +             ++     F  G + VQDAS+ 
Sbjct: 155 RVNTLKTTKNDLQLKLQSEDIETEVLPNHPYALKLTERANVFKTEAFKNGWFEVQDASSQ 214

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +          + V+D+CA  GGKT     L+ +  +V A+D+ + +L+KL+    R  +
Sbjct: 215 LVADFLDVKPGMKVVDVCAGAGGKTLHLAALMENKGQVIAMDIYESKLKKLKIRARRNGV 274

Query: 289 YAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  ++  +D+     K     D +L+DAPCS  G +RR+PD  W    + +      Q +
Sbjct: 275 HNIEMKVIDSTKPIKKLHGKADRLLIDAPCSGLGVLRRNPDAKWKLQPEFVQSIKQTQIE 334

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L Q    VK GG +V++ CS+   ++++ V+K L                         
Sbjct: 335 VLEQYSKMVKSGGKMVYATCSVLPSENQKQVEKFL------------------------- 369

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            + E     T    +K+    SG DGF+   L + 
Sbjct: 370 -TSESGKEFTFIKDKKVLAYKSGFDGFYMALLEKK 403


>gi|145589917|ref|YP_001156514.1| Fmu (Sun) domain-containing protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048323|gb|ABP34950.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 465

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 31/320 (9%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTG 201
            + +PEW  +    + G++    ++ A + P  +DL         E    ++NA+     
Sbjct: 128 RNNLPEWLWDAFGKYPGEDTREELAKALMHPALLDLRANTMKTTREELLVQMNALGGRYQ 187

Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I     P+        ++ +  GF  G++ VQD  + +   L        V+D CA  G
Sbjct: 188 AIPTPYAPDGVRIMGKPALQNTAGFKAGMFEVQDEGSQLLAYLLAPKRGEMVVDFCAGAG 247

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----L 306
           GKT  +   + S  ++ ALD S+RRL  L+    R  L     + +D+ +    K     
Sbjct: 248 GKTLAIGALMRSTGRLYALDTSERRLANLKPRQARSGLSNVHPVWIDSENDSKIKRLAGK 307

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            D VLVDAPCS  GT+RR+PD+ W +  + +++    Q  +L      +KPGG +V++ C
Sbjct: 308 IDRVLVDAPCSGMGTLRRNPDLKWRQTPEGVLELNEKQMNILSSASRLLKPGGRLVYATC 367

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVP----LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           SL  Q+++++ +  L   P   E VP    L   + K            W ++ P +   
Sbjct: 368 SLLPQENQQIAEAFLEKHPN-FEAVPAAEVLKPLFPKDKLPLGCSLDNPWWQLWPHI--- 423

Query: 423 IDGVSSGMDGFFAVALRRLI 442
                 G DGFF    ++  
Sbjct: 424 -----HGTDGFFGAVFQKKA 438


>gi|256544908|ref|ZP_05472279.1| sun protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399407|gb|EEU13013.1| sun protein [Anaerococcus vaginalis ATCC 51170]
          Length = 426

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 173/453 (38%), Gaps = 51/453 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +    L  +  K    T +++              D   +   +   L     ++ +L 
Sbjct: 5   KLILDGLYRISYKNEKSTDIINEIAKKVE-------DISYITKNIYGVLENKLYLEYILA 57

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE------NRHFAK 122
            +    + +    ++ +L + +  I +LD  +YA+V+  V   K+         N     
Sbjct: 58  KLSKIKVKKLDKKVKLILLIGIYNIHFLDRKNYAIVNELVNLTKKVSFKSKSFVNAILRS 117

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            +          K    +  +    +P W  + L + YGK+      D+      + + +
Sbjct: 118 YIRDEKNLSKINKENDEEFNSIKYSMPLWIIKYLNDSYGKDYTQKFLDSLNKERKLSIRI 177

Query: 183 K---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIP 233
                  E   + L           +       + P+S+ S   F +G + +Q  ++   
Sbjct: 178 NKTKITREKLKNLLEDKGYIVEDSLISTLSLVIKNPKSLASTEEFKKGFFTIQSEASIKV 237

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            ++     N ++LD+CAAPG KT+ +     + +K+ A D+S  +L K+  N+ RL L  
Sbjct: 238 CEILNPKKNSNILDICAAPGTKTSFIAELCENSSKIIANDISFNKLSKINENIKRLGLKN 297

Query: 291 EDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +I   DA     +    FD +L D PCS  G + R P++ + R  +D++  +  Q+ +L
Sbjct: 298 IEITNFDASILKEEYKEKFDYILCDLPCSGLGVMDRKPEIRYNRTMEDVISLSKLQKNIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +   ++K GGI+VFS C++   ++++    + +     ++ + +N              
Sbjct: 358 DKAFLYLKTGGILVFSTCTIGSIENKDNFNYLSKK--KRLKNIKINGK------------ 403

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                        + +      DGFF     ++
Sbjct: 404 ----------DYLEFNSFEDETDGFFLTKFEKI 426


>gi|264677013|ref|YP_003276919.1| Fmu (Sun) [Comamonas testosteroni CNB-2]
 gi|262207525|gb|ACY31623.1| Fmu (Sun) [Comamonas testosteroni CNB-2]
          Length = 417

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 157/449 (34%), Gaps = 68/449 (15%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ---QL 85
           +   + ++ +  L  R++  +   V   LR     +A+      S    ++ ++     +
Sbjct: 2   VSRFFRENRY--LGPRERATLAETVYTVLRKKLLFEAL--AHSGSGARERRLAILGFAAV 57

Query: 86  LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ----- 140
           LR                     EQAK++ + ++     +    + +    EL       
Sbjct: 58  LR---------------------EQAKKEGKVKNKDGQDSETFIKAALTPQELKWLAACD 96

Query: 141 -------RIAGISIIPEWFKERLENF-YGKERVLAISDACISPLYIDLTVKFD-IETWAH 191
                    A    +PEW  E L+         LA S    +PL + +    D       
Sbjct: 97  GVKPEELMEAHRHNLPEWLVEPLKAQLGDGFWALAASMEQAAPLDLRVNTLNDKRSDLRK 156

Query: 192 KLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +L    +                  ++  +  F  G   VQD  + +   +        V
Sbjct: 157 ELEKAGIKAEPTPFSPIGLRVDGKPALAKVDAFNRGAIEVQDEGSQLLALMLDAKRGEMV 216

Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDA 298
           +D CA  GGKT  +   + +  ++ A DVS  RL+ L+  L R  L          E D 
Sbjct: 217 VDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARSGLSNVHPAAIAHERDE 276

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                    D VLVDAPCS  GT+RR+PD+ W +    + +    Q  +L      VK G
Sbjct: 277 RVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSVKAVQELTQKQAAILESSARLVKAG 336

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-----WI 413
           G ++++ CS+  +++E + +    + P  V L          I     L   G     ++
Sbjct: 337 GRLIYATCSILPEENEAIAEAFSAAHPEFVPLDAGEVLEQLKIADGDKLCSGGDEGRRYL 396

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           R+ P             DGFFA    +  
Sbjct: 397 RLWPH--------QHETDGFFAAVWVKKA 417


>gi|260654218|ref|ZP_05859708.1| putative Sun protein [Jonquetella anthropi E3_33 E1]
 gi|260630851|gb|EEX49045.1| putative Sun protein [Jonquetella anthropi E3_33 E1]
          Length = 438

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 109/456 (23%), Positives = 183/456 (40%), Gaps = 52/456 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +LS V +   +   L D          L   D+ L  ++V   LR       +  
Sbjct: 5   EAALKVLSAVEKGGFASQKLRD--------LPLDAPDRTLAASLVYACLRRAELWRFLAF 56

Query: 69  FVLISSLPRKKYSLQQLLRVSVA---QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
             L         S++  L++  A   ++    V    +V+  V+  KR   +R  AK+VN
Sbjct: 57  EYLRPKPEGFSPSVRLALQLGAAGALELKNFAVPA--LVNGLVDWTKR--SDRGGAKVVN 112

Query: 126 SILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
           +++RR+  +    L++          + +  +P W        YG E   A+     SP+
Sbjct: 113 AVMRRLLDQGPARLEQLGNDRSLEARSLLFGVPLWAARLFTRDYGSETGDALLKTQQSPV 172

Query: 177 YIDLTVKFD--IETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDA 228
            + L V      E     L A         L      + +      LPG+  G+   Q  
Sbjct: 173 ALALRVSRSDLRERVLASLGASGWNASPSDLLSESIRLETTALPPCLPGYDAGLVTPQSE 232

Query: 229 SASIPVQLFGTLNNL-SVLDLCAAPGGKTAQLIVSGAKVTA--LDVSKRRLEKLRCNLDR 285
           ++               +LD+CA    K+  ++ +  ++T    D+SK R+      L R
Sbjct: 233 TSMSVAHEAAASCPEGRILDMCAGRAVKSGAVLQANVRLTLEGWDLSKPRVLAGMKELTR 292

Query: 286 LHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L+L     +   DA +  P++  DA+LVDAPCS +GT RRHP+  W     D+  ++  Q
Sbjct: 293 LNLTGRAKLRTGDALELVPEEAPDAILVDAPCSGSGTWRRHPEAKWRLSESDLASNSALQ 352

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R+LL +    VKPGG V++S CSL   ++E VV +V+  +P+ VE +  +  +       
Sbjct: 353 RRLLDRACRLVKPGGTVIYSTCSLFAAENEAVVSQVIEETPMTVEPLSPSFKFDSLRSPG 412

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                 +   DGF+ V LRR
Sbjct: 413 AV----------------AFPSTPWNDGFYLVKLRR 432


>gi|222147270|ref|YP_002548227.1| Sun protein [Agrobacterium vitis S4]
 gi|221734260|gb|ACM35223.1| Sun protein [Agrobacterium vitis S4]
          Length = 428

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 157/452 (34%), Gaps = 49/452 (10%)

Query: 8   RLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           RL  +  +LS +  +R  +   L        F      D+  +  IV   LR       +
Sbjct: 6   RLAGAIEVLSDIETRRRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMKLSHAYI 63

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D     S     Y++  LLR             + +   +   A     +      +  
Sbjct: 64  MD---DDSPAALGYAV--LLR------------QWGMAPES--LAADLDGDSFAPAPLTQ 104

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
                   +            IPEW     E  +G + +     A      +DL      
Sbjct: 105 AQSAAFSSRTLEDAPQFVQGDIPEWVVPSFEAVFGADWLREA-QALAVRPSLDLRANTLK 163

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIP 233
                 L A+                           ++ +  GF +G + VQD  + I 
Sbjct: 164 ANRDKVLKALSHTQARPATISPIGIRIEPGEGPSRLPNVTAELGFQKGWFEVQDEGSQIV 223

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L        VLD CA  GGKT  +   + +  +V A D  ++RL  +   L R   + 
Sbjct: 224 SALVEPGEGHQVLDFCAGGGGKTLAMAAAMGNKGQVHAYDSDRKRLAPIIERLKRAGTHN 283

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             + +  A        FD VLVDAPC+ TGT RR PD  W     ++ +    Q++ L +
Sbjct: 284 IQVHDRVAALQSLTGRFDKVLVDAPCTGTGTWRRRPDTKWRLTDRNLQERIEQQQQALTE 343

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID--MAMALS 408
             ++V+ GG +++  CS+  ++++  ++    + P     +P+   +       +A  +S
Sbjct: 344 AATYVRSGGELIYVTCSVLPEENDRQIEAFTAAHP-QFSPMPMLERWTGLFGGSVAKPIS 402

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G           +   ++  DGFF   + +
Sbjct: 403 AHG-------KSLTLSPAATDTDGFFFCRMVK 427


>gi|120613161|ref|YP_972839.1| sun protein [Acidovorax citrulli AAC00-1]
 gi|120591625|gb|ABM35065.1| sun protein [Acidovorax citrulli AAC00-1]
          Length = 461

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 119/444 (26%), Positives = 181/444 (40%), Gaps = 47/444 (10%)

Query: 25  LTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKY 80
           +  ++ +  G S    L+  D   +  V+A+    LR L R +A+   +      PR   
Sbjct: 30  VDAVMAVRGGQSGTAALAAVDPVLRAGVQALFFAVLRQLGRAEALRAQLAPRRPKPRVDA 89

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE--- 137
            L   L +   Q        + +V+ AVE AKR    R  A  VN+ LRR  RE+     
Sbjct: 90  LLCSTLALG-WQAGAAPYEPFTLVNQAVEAAKRHAATRGQAAFVNACLRRFLRERDALVA 148

Query: 138 -LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTV-KFDIETWAHKLN 194
                       P W+ ERL   +       +          + +   K D+  +   L 
Sbjct: 149 ATDSDPVARWNHPAWWIERLRKDHPGHWEQILRANNAQAPMALRIHRGKVDMAGYLAALE 208

Query: 195 AVMLPTGGIR----LKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVL 246
           AV +          + E P+ +  LPGFA+G   VQD +A                L VL
Sbjct: 209 AVGMKAWPATDTGLVLESPQPVQRLPGFADGRVSVQDLAAQQAAPLLLSGLDLGRPLRVL 268

Query: 247 DLCAAPGGKTAQLIVSG-----AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---- 297
           D CAAPGGKTA L+          VTAL++   R  ++   L RL L A  ++  D    
Sbjct: 269 DACAAPGGKTAHLLEYAGAGSPVHVTALEIDPLRSARIGETLQRLGLRA-QVLVADAGRP 327

Query: 298 ---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                  C  + FDA+L+DAPC+++G +RRHPDV W R   DI + A  Q +LL      
Sbjct: 328 EDWWQQACGGEPFDAILLDAPCTASGIVRRHPDVRWLRRPGDIAQLAAQQARLLSTLWPL 387

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           ++PGG +++  CS+ + + +++V+  L ++     L        +           G +R
Sbjct: 388 LRPGGRMLYCTCSVFRAEGDDMVRSFLANNNDAHLLPSPGHLLPRDPGDG------GSVR 441

Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL 438
             P             DGFF   L
Sbjct: 442 ENPSRE---------HDGFFYALL 456


>gi|187922320|ref|YP_001893962.1| sun protein [Burkholderia phytofirmans PsJN]
 gi|187713514|gb|ACD14738.1| sun protein [Burkholderia phytofirmans PsJN]
          Length = 457

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 175/449 (38%), Gaps = 27/449 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +  V     +L   L   +  +     +   +  V+ I   T+R L   + ++  +
Sbjct: 16  AGQAVGAVRL-GAALPAALQSVFASAPEGNAAAA-RGAVQDIAYRTMRRLATAEWLIAKL 73

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  +L  S+A ++  +       + VVD AV      +E      LVN+
Sbjct: 74  VKKAPP---PHVGHVLACSLALLVDDEADAAYAPFTVVDQAVSAIGARREFAFAKGLVNA 130

Query: 127 ILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LR   RE+     +           P W+ + ++  +       ++         + + 
Sbjct: 131 VLRSFLREREALLKDAQDDEVARWNYPAWWIDAVKRAWPDAWQSVLAAGNTQGPLTLRVN 190

Query: 182 VKFD-----IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            +       ++T  +   A             P  +  +PGF +GV  VQDA A +   L
Sbjct: 191 ARHSTVDAYLQTLQNHHIAASKVGDYAVKLATPMPVDRIPGFNDGVVSVQDAGAQLAAPL 250

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291
               + + VLD CAAPGGKT  L+  +  ++ AL+    R  ++  NL RL L AE    
Sbjct: 251 LDARDGMRVLDACAAPGGKTGHLLELANLQLVALESDASRARRIGENLQRLKLEAEVRIG 310

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           D      +     + FD +L D PCS++G +RRHPD+ W R   DI      QR++L   
Sbjct: 311 DAGAPAKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVTEQRRILDAL 370

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VKPGG +++  CS+  ++ E   Q         V L         S   A A +  G
Sbjct: 371 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL-DAPGQLLPSAARAPADTSAG 429

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                P             DGFF    ++
Sbjct: 430 SHAGQPAEDSAGANSDH--DGFFYARFQK 456


>gi|73542425|ref|YP_296945.1| Fmu [Ralstonia eutropha JMP134]
 gi|72119838|gb|AAZ62101.1| Fmu [Ralstonia eutropha JMP134]
          Length = 425

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 100/444 (22%), Positives = 161/444 (36%), Gaps = 51/444 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  VM        ++   + +++   L  R++ ++   V   LR              
Sbjct: 15  RLLGKVMLFARPADAVVSYYFRENS--KLGHRERGIIAEAVYAVLRRRVEF----GQFAE 68

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                         A   +  L +           F     +      
Sbjct: 69  SG---------------------TGSASRRLALLGLAATLGRDTLTPFLYPDEAEWLDRL 107

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET---- 188
                        + +PEW  + L   +G+    A+ DA + P  +DL V     T    
Sbjct: 108 TTIERSSLSPRVRANLPEWLFDNLVARHGEAFTSALGDAWLRPAPLDLRVNLIKTTREAA 167

Query: 189 ----WAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                A  L A   P     ++   +  +  LP F  G+  VQD  + +   L G     
Sbjct: 168 LAELEAAGLRAEPTPMAPAGIRMQGKPALNQLPMFVNGLVEVQDEGSQLLCSLVGPKRGE 227

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296
            V+D CA  GGKT      + S  ++ A DVS++RL  L+  L R  L     +    E 
Sbjct: 228 MVVDFCAGAGGKTLALGVAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHPVLIDSER 287

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           DA         D VLVDAPCS  GT+RR+PD+ W ++ + +++    Q  +L      VK
Sbjct: 288 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQNPESVLELTAKQSAILEAAARLVK 347

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG VV++ CS+ + ++E +V+  L   P    +        + I++    +      + 
Sbjct: 348 GGGRVVYATCSVLEAENEAIVRDFLAKHPTFRLVPATEVLAEQKIEVPALQTEGDMFALY 407

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P +           DGFFA  L R
Sbjct: 408 PHL--------HQTDGFFAAVLER 423


>gi|86130339|ref|ZP_01048939.1| NOL1/NOP2/sun family protein [Dokdonia donghaensis MED134]
 gi|85819014|gb|EAQ40173.1| NOL1/NOP2/sun family protein [Dokdonia donghaensis MED134]
          Length = 402

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 163/458 (35%), Gaps = 74/458 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N    +   L  +         +L              RD+  +   V   +R+ 
Sbjct: 1   MKLHRNLVFAAVDALGMIFNDGEQADKVLRKVLKFDKRWG--SRDRSFIAETVYDIVRWK 58

Query: 61  PRIDAVLD---FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                + +        +L R  +++   LR  +      +V D                 
Sbjct: 59  RLYSEIAEVKAPYSRPNLFRL-FAVWATLR-GI------EVPD----------------- 93

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             + ++     RR+     EL +       IP+W  E  E   GK+    +  A  +   
Sbjct: 94  --WKQMEPIPTRRIKGRFDELSKIRKYKESIPDWMDEMGEKALGKKWGAEL-AALNTQAQ 150

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELP---------ESIVSLPGFAEGVWWVQDA 228
           + L       T     N +       ++ +           +++ +   F  G + VQDA
Sbjct: 151 VVLRANSLKATVKEVRNTLADQDIDTKILDTHPDALELVERKNVFTSEAFKNGFFEVQDA 210

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+    ++      + V+D CA  GGKT  L   + +  ++ A+D+   +L +L+    R
Sbjct: 211 SSQKVARMLEVEPGMRVVDACAGAGGKTLHLAALMENKGQIIAMDIYAGKLRELKRRSKR 270

Query: 286 LHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              +  +  E+ +     K     D VL+DAPC+  GTI+R+PD+ W    + + K    
Sbjct: 271 AGAHNIETREITSTKVFKKLYNSADRVLIDAPCTGLGTIKRNPDLKWKLQPEFVDKVVQR 330

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  +L      VK GG +V++ CS+  ++++E VQ  L +                    
Sbjct: 331 QADILQNYSKIVKDGGKMVYATCSILPRENQEQVQAFLAT----------------EQGQ 374

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
              L  E          E +    SG DGF+   L R+
Sbjct: 375 KFQLEKE----------ETVSPAKSGYDGFYMALLSRK 402


>gi|11499905|ref|NP_071149.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
 gi|2648195|gb|AAB88932.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
          Length = 437

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 102/447 (22%), Positives = 182/447 (40%), Gaps = 41/447 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++ +L+ V R RIS+   +    G   +++     +  V A    TL+ L  ID  L 
Sbjct: 15  EIAAKVLAEVERSRISVKSAVQKLAGGFDYKV-----RGSVHAYSVETLKRLNAIDYFLK 69

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             L           + LLR++V ++ Y  V      D AV  A+  +        V   +
Sbjct: 70  STLKK-FDGLDPFTRNLLRIAVYEMKYKGVHPALATDSAVRIARE-RGKASLVNAVLRKV 127

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185
            ++  +    L+ ++     PEWF +      G++  L +  A +      + V      
Sbjct: 128 EKLDIQAEGRLKELSLTYFHPEWFVKYAIELLGEDGALKLMKANLRNPPTYVRVNELKGS 187

Query: 186 IETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           +E+    L                R+K   +   SL   +EG + +QD ++         
Sbjct: 188 VESVREYLEKNGVILEETFLDEVFRVKGYEKHPASLDWHSEGKYVIQDLASCFVSHALNP 247

Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                V+DL AAPG KTA +   + +  ++ A+D S  R+ ++R  L +L +   +I   
Sbjct: 248 SPGDVVIDLAAAPGMKTAHMAMLMQNEGRIVAVDNSPSRVRRMRSKLKQLGVKNVEIKLG 307

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D   +  +   D  LVDAPCSSTG     P+V WT D      +   QRK++      ++
Sbjct: 308 DGCVF--ECEADKALVDAPCSSTGNYASQPNVKWTFDERKFRATMKVQRKMIANA---LR 362

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL---SPEGWI 413
               VV++ CS+  +++EE    +L++     +++PL S + + +     +     E  +
Sbjct: 363 NADEVVYATCSITFEENEEN---LLKT---GAKILPLPSPFGRGVREFRGVLFRDWEKVV 416

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           R  P +            GFF   L R
Sbjct: 417 RSFPHL--------HDTAGFFISKLTR 435


>gi|91781434|ref|YP_556640.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans
           LB400]
 gi|91685388|gb|ABE28588.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 457

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 176/450 (39%), Gaps = 29/450 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +  V     +L   L   +  +    ++   +  V+ I   T+R L   + ++  +
Sbjct: 16  AGQAVGAVRL-GAALPAALQSVFVSAPEGSVAAA-RGAVQDIAYRTMRRLATAEWLIAKL 73

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDV----ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  +L  S+A ++  +     A + VVD AV      +E      LVN+
Sbjct: 74  VKKAPP---PHVGHVLACSLALLVDDEANAAYAPFTVVDQAVSAIAARREFAFAKGLVNA 130

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LR   RE+                 P W+ + ++  +       ++        + L V
Sbjct: 131 VLRTFLRERETLLSAAQADEVARWNYPAWWIDAVKRAWPDAWQSVLAAGNTQGP-LTLRV 189

Query: 183 KFDIET-------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T         ++  A             P  +  +PGF +GV  VQDA A +  Q
Sbjct: 190 NARRSTVDAYLQLLQNQHIAASKAGDYAVKLATPMPVDRIPGFTDGVVSVQDAGAQLAAQ 249

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--- 291
           L G  + + VLD CAAPGGKT  L+  +  ++ AL+    R  ++  NL RL L AE   
Sbjct: 250 LLGVHDGMRVLDACAAPGGKTGHLLELANLQLVALESDASRARRIGENLQRLKLEAEVRI 309

Query: 292 -DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            D      +     + FD +L D PCS++G +RRHPD+ W R   DI      QR++L  
Sbjct: 310 GDAGTPAKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVAEQRRILDA 369

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               VKPGG +++  CS+  ++ E   Q         V L                 S  
Sbjct: 370 LWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRLDAPGQLLPSVARAPADASAG 429

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     E   G +S  DGFF    ++
Sbjct: 430 SHA---GQSAEDSAGANSDHDGFFYARFQK 456


>gi|295133869|ref|YP_003584545.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia
           profunda SM-A87]
 gi|294981884|gb|ADF52349.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia
           profunda SM-A87]
          Length = 411

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 161/458 (35%), Gaps = 74/458 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L  +  +      +++             RD+  +       +R+ 
Sbjct: 1   MRLHRNLVFATVDALLEIFNEGQYADKVIEKTLKRDKRWG--ARDRSFIAETTYDIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKY----SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                + +  +     R+      ++   LR  +A      + D+  ++           
Sbjct: 59  RLYAEIAE--VKEPFSRENAFRLFAVWATLR-GIA------LPDWKQIEE---------- 99

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
                    +  RR+      L +       IP+W  E      G++       A     
Sbjct: 100 ---------TPTRRIKGRFDALSKIRKFRESIPDWLDELGVAELGEDIWEKEIGALNKQA 150

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQD 227
            + + V     DI+T   KL      T  ++            +I     F  G++ VQD
Sbjct: 151 PVIIRVNTLKTDIQTLQQKLKDEGFETINLKDYPYALQLVERANIFKTESFQNGLFEVQD 210

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
           AS+ +            V+D CA  GGK+  L   + +  +V ALD+   +L++L+    
Sbjct: 211 ASSQLVADFLDVKPGDRVVDTCAGAGGKSLHLAALMENKGQVIALDIYGNKLKELKRRAK 270

Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           R   +  +   +D      K     D VL+DAPCS  G + R+PD  W  + + + +   
Sbjct: 271 RAGAHNIETRVIDNNKAIKKLHGKADKVLIDAPCSGLGVLSRNPDAKWKLEPEFLDRIRK 330

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q++++ Q    VK  G +V++ CS+   +++  V+  L S              +K I+
Sbjct: 331 TQQEIIRQYCKIVKKEGKMVYATCSVLPSENQLQVKDFLASEEGK---------DFKLIE 381

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               LS E                 +G DGF+   L +
Sbjct: 382 DRKILSSE-----------------TGYDGFYMALLEK 402


>gi|227824162|ref|YP_002828135.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
 gi|227343164|gb|ACP27382.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
          Length = 429

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 150/447 (33%), Gaps = 45/447 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L  + +++  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AIDVLDDIEKRKRPVADALKDWGLSHRFAG--SGDRAAIGNIVYDALRMKLSHAYLMDS- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++                      + A+   +++   +  ++ +  
Sbjct: 67  -----DSAAALGHAVM-------------YRQWGFTPDKLAEELADDKFAPQAPSAEMMT 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
               +      +     IPEW +   E  +  + +     A      +DL V       +
Sbjct: 109 AFGARRIDDAPLNVQGDIPEWTQASFEENFSDDWLDEA-RALAGRPTLDLRVNTLKASRD 167

Query: 188 TWAHKLN---AVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLF 237
                L    A         ++           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KVLKSLERSGAEPAAIARHGVRIPAGEGASRLPNVTAEISFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 FPREGEQVLDYCAGGGGKTLAMSAAMNNKGQVHAYDTDRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E            D VLVDAPC+ TGT RR PD  W     ++ +    Q + L     F
Sbjct: 288 ESAEALASLAGRCDRVLVDAPCTGTGTWRRRPDTKWRLTQKNLEERLAQQEEALAGAAQF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V+PGG +++  CS+  +++E  V      +P   E++     +               ++
Sbjct: 348 VRPGGHLIYVTCSVLPEENEAQVYGFCEDNP-EFEILSAADTWAALFGTDKPQPWSADMK 406

Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL-RR 440
                   +   S+G DGFF   + R+
Sbjct: 407 T-----VTLTPASTGTDGFFFCLMGRK 428


>gi|162147596|ref|YP_001602057.1| ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786173|emb|CAP55755.1| putative ribosomal RNA small subunit methyltransferase B
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 413

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 166/437 (37%), Gaps = 45/437 (10%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
           R     + +  + +  +  +   D+  + A V   LR    +   LD            +
Sbjct: 6   RRPADAVANAFFRERRY--IGGGDRRAISARVWTVLRHWRHLAWWLDRA------GAAAT 57

Query: 82  LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR-VSREKIELLQ 140
            +  L  ++A +              +  ++     +  +     +  R   +  +    
Sbjct: 58  PRARLIAALALM-----PQPGEAPQDLFVSQDRYAPQPLSAAERDLATRLRGQAMVHPDM 112

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK-------- 192
             A    +P+W   RLE  +G + + A   A      +DL V     T A          
Sbjct: 113 PRAVRLEVPDWLLPRLEETFGAD-LDAEVAALAGEATLDLRVNLLKTTRAEAARLLAADG 171

Query: 193 LNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           + A         L+    + + +   F  G+  +QD  + I V        + VLD CA 
Sbjct: 172 IMAEPTGLSPWGLRVPGRQPVTATAAFKSGLVEIQDEGSQIVVAAADARPGMRVLDYCAG 231

Query: 252 PGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPKK 305
             GK    A  + +   + A DVS+ RLE     L R  ++  +       D +      
Sbjct: 232 AAGKTLGMAMTMENRGHIVACDVSEPRLEGAVRRLRRAGVHNAERHLLVPGDRWARRRAA 291

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD VLVDAPC+ TGT RR+PD        D+ +    Q  +L    + V+PGG +V++ 
Sbjct: 292 SFDRVLVDAPCTGTGTWRRNPDARLRLTEQDLAELMAKQADILATASALVRPGGRLVYAT 351

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+ ++++++ +   LR+SP       +        D+A  L+ +G I ++P        
Sbjct: 352 CSILREENQDRIASFLRASPHFRRAETVP-------DLAPDLAQDGMIALSP-------- 396

Query: 426 VSSGMDGFFAVALRRLI 442
           +  G DGFFA  L R  
Sbjct: 397 LRHGTDGFFAAILERTA 413


>gi|319407594|emb|CBI81244.1| SUN-family protein [Bartonella sp. 1-1C]
          Length = 428

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 148/438 (33%), Gaps = 25/438 (5%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +    +  L        F  +S  D+  +  IV   LR    +   +D
Sbjct: 8   QAAIDILQEIETRYRPASEALKDWGFSHRFAGVS--DRAAIGTIVYDALRRRYSLQWRMD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                       +++ ++  ++     L +     V      A +    +         L
Sbjct: 66  S----------NNIRDVVFGTLFDSGMLTIEQVDKVLEGDRFAPQLLAPQQRKAWQQRQL 115

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185
                     + +     + P +    ++          +    ++  +     L     
Sbjct: 116 VNAPDYIRADIPQWCKAHLYPLFVDNWIKEAAALATRPPLDLRVNSLKATPKKVLKALEK 175

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            +  +       L    I   E   ++ + P F +G + +QD  + +   L      + +
Sbjct: 176 TKVKSFSWFQQALRIEPIEKFERHPNVQAEPAFQKGYFEIQDLGSQLVSYLIEAKAGMQL 235

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD CA  GGKT   A  + +  ++ A D  K RL  +   L R  +              
Sbjct: 236 LDYCAGAGGKTLALAANMENRGQIYAYDSEKIRLAPIFNRLQRAGIRNVQPRMYKEELKS 295

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                D VL+D PCS TGT RR PD  W      + +    Q  +L + + ++KP G +V
Sbjct: 296 LIGQMDIVLLDTPCSGTGTWRRRPDAKWRLTLQKVKQRQEEQFAILNEALIYIKPRGRLV 355

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CSL   ++E  + + L+     +   P+N         + ++          +    
Sbjct: 356 YITCSLFNDENEAQISRFLQKHSNFL---PINMQKLWHRHFSSSI----MQPAFSNYGLT 408

Query: 423 IDGVSSGMDGFFAVALRR 440
           +   ++  DGFF   L++
Sbjct: 409 LSPAATKTDGFFLSILQK 426


>gi|325955242|ref|YP_004238902.1| Fmu (Sun) domain protein [Weeksella virosa DSM 16922]
 gi|323437860|gb|ADX68324.1| Fmu (Sun) domain protein [Weeksella virosa DSM 16922]
          Length = 403

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 157/441 (35%), Gaps = 65/441 (14%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              L+ V  +       L+     +       RD+  +   V   +R+      +++  +
Sbjct: 14  IDTLAEVFFEGKYADKELERVLKSNRSWG--ARDRAFIAETVYDLVRWKR----LVEGSM 67

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
              L R          V    I+ +                 ++    + +  +   + +
Sbjct: 68  SKPLSRDTLWEF----VGTWFIMNM---------------AEEQHLPSWDEFRHLNPKEI 108

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIETW 189
            +   +  +  A     P+W     E   G++ +  +         +    T+K D ++ 
Sbjct: 109 IKRHHQSAKNPAVAQSFPDWLYALGEKELGEQWIKEVEALNQQAPTVIRVNTLKIDRKSL 168

Query: 190 AHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
             +L    + T  +   +         +I     F  G + VQDA + +           
Sbjct: 169 HKELKENKIKTHILSKFQDALELDEKMNIFRTDAFQNGFFEVQDAGSQLIAPFLRVEPGQ 228

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AF 299
            V+D CA  GGKT  L   + +  ++ A+D+ + +L++L+    R ++       ++   
Sbjct: 229 RVIDACAGAGGKTLHLASLMKNKGQIIAMDIHEWKLKELKKRAKRNNVQNVQTRLIESKT 288

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               ++  D +L+DAPCS  G ++R+PD  W    + I      Q K+L      VK GG
Sbjct: 289 IKRMEESCDRLLIDAPCSGLGVLKRNPDAKWKLQPEFIENIKNEQAKILDSYSKMVKKGG 348

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           ++V++ CS+   +++E V+K L + P    ++                            
Sbjct: 349 LMVYATCSILPSENQEQVEKFLANHPEYTLILD--------------------------- 381

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
            ++      G DGF+   + R
Sbjct: 382 -KQYLPSEYGYDGFYMALMER 401


>gi|167736565|ref|ZP_02409339.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 14]
 gi|167822184|ref|ZP_02453655.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 9]
 gi|226194606|ref|ZP_03790201.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei Pakistan 9]
 gi|254182248|ref|ZP_04888845.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1655]
 gi|254188214|ref|ZP_04894726.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254260319|ref|ZP_04951373.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1710a]
 gi|157935894|gb|EDO91564.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184212786|gb|EDU09829.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1655]
 gi|225933307|gb|EEH29299.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei Pakistan 9]
 gi|254219008|gb|EET08392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1710a]
          Length = 469

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 96  VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+             +     W+ + +E  +       ++        + L V 
Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 271

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468


>gi|237654726|ref|YP_002891040.1| sun protein [Thauera sp. MZ1T]
 gi|237625973|gb|ACR02663.1| sun protein [Thauera sp. MZ1T]
          Length = 435

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 114/448 (25%), Positives = 182/448 (40%), Gaps = 49/448 (10%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  ++ L++ V+    +LT + +            +  +  VR +   TLR   R DA+
Sbjct: 21  AR--ATELVAGVID-GANLTDVFERMQAGHPEW--PEGTRGAVRDLAWSTLREFGRGDAI 75

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L  +L S  P     ++ LL V++ ++       + VVD AV              LVN 
Sbjct: 76  LSRLLHSPPP---VEIRALLLVALQRLTQRPEQAHTVVDQAVGATA--VAMPGLRNLVNG 130

Query: 127 ILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LR   R + E               P W+ ER+ + + +     +  A  +   + L V
Sbjct: 131 VLRNALRRQPEWQGWIEAEPEARHAFPAWWVERVRSAHPQAW-QDLLAAGNTRPPMALRV 189

Query: 183 KFDIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T A     +               +   P ++  LPG+AEG   VQDA A    Q
Sbjct: 190 NPRRATLAEVEAELAAAGLEFRRLDNDALVLARPLAVARLPGYAEGRLSVQDAGAQWAAQ 249

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--D 292
           L        VLD CAAPGGKTA +   + A + AL++   R  ++  NLDRL L AE   
Sbjct: 250 LLDVRAGERVLDACAAPGGKTAHILERADADLLALELDPLRAGRVARNLDRLGLRAELKV 309

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                   +   + FD +L D PCS++G +RRHPD+ W R   DI   A  Q ++L    
Sbjct: 310 ADCRRLAAWWDGRPFDRILADVPCSASGVVRRHPDIKWLRRDSDIANFAAQQAEILEALW 369

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             + PGG +++  CS+  +++   V +         E +P+  +                
Sbjct: 370 RTLAPGGTMLYVTCSVFDEENAGQVARFCVRH-ADAERLPIRGSS--------------D 414

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +++ P             DGF+   LR+
Sbjct: 415 LQLLPCA---------DHDGFYYALLRK 433


>gi|126663950|ref|ZP_01734944.1| putative sun protein [Flavobacteria bacterium BAL38]
 gi|126623899|gb|EAZ94593.1| putative sun protein [Flavobacteria bacterium BAL38]
          Length = 405

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 161/461 (34%), Gaps = 74/461 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L  +  +      ++               D+  V   +   +R+ 
Sbjct: 1   MRLHRNLVFTTIDSLMAIFNEGEYADKVVARALKKDKRWG--SHDRKFVAETIYEIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYS----LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                + +  +     R        +  +LR                             
Sbjct: 59  RLYVEIAE--VKEPFDRDNIWRIFAVWAVLR--------------------------GYT 90

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
              +     + +RR+  +  EL +       IP+W  E      G+E       A     
Sbjct: 91  LPDWKYFEETPVRRIKGKFDELTKTRKFKESIPDWMDELGVKELGEEIWTKELAAQNEQA 150

Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227
            + L V       E     L  + + T   +      +     ++     F +G++ VQD
Sbjct: 151 KVILRVNRLKTTKEKLRAILMDLDIVTEFNKEYPDALILTERANVFLTDAFKDGLFEVQD 210

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
           AS+ +          + V+D CA  GGKT  L   + +  ++ A+D+ + +L++L+    
Sbjct: 211 ASSQLVAYFLDVQPGMRVVDTCAGAGGKTLHLASLMENKGQLIAMDLYESKLKQLKIRAK 270

Query: 285 RLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           R   +     +IE         +  D VL+DAPCS  G ++R+PD  W    + I     
Sbjct: 271 RNGAFNIEPRVIESTKTIKKLHEKADRVLIDAPCSGLGVLKRNPDSKWKLQPEFIENIKK 330

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      VKPGG +V++ CS+   +++E ++  L                  S +
Sbjct: 331 IQAEVLENYSKIVKPGGKLVYATCSVLPSENQEQIKHFL------------------STE 372

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +    +   +++      +K+    SG DGF+   L R I+
Sbjct: 373 IGKEFT---FVQ-----DKKVLAHESGFDGFYMALLERKIK 405


>gi|325287453|ref|YP_004263243.1| Fmu (Sun) domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322907|gb|ADY30372.1| Fmu (Sun) domain protein [Cellulophaga lytica DSM 7489]
          Length = 403

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 158/456 (34%), Gaps = 68/456 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N        L+ +  +      +++             RD+  +       +R+ 
Sbjct: 1   MKLHRNLVFAVIDALNLIFNEDEYADKVVEKVLKFDKRWG--SRDRGFIAETTYEIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + +  + +   R       L R+                  AV    +  E   +
Sbjct: 59  RLYTEIAE--VKAPYSRP-----NLFRI-----------------WAVWAVLKGIELPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            ++  +  RR+     EL +       IP+W  E  E   G ++     +A      + L
Sbjct: 95  KQIEPTPTRRIKGRFDELSKIRKFKESIPDWIDEVGEKALGDKKWTKEINALNKQAEVVL 154

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231
            V             L    +    I+            ++     F +G++ +QDAS+ 
Sbjct: 155 RVNTLKTTKANLQKALLEENIVANPIKGYPDALTLTERANVFRTEAFKKGMFEMQDASSQ 214

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +            V+D CA  GGKT  +   + +  ++ ALD+   +L++L+    R   
Sbjct: 215 LVGHFLDVKPGQRVVDTCAGAGGKTLHIAALMENKGQLIALDIYGNKLKELKRRAKRDGA 274

Query: 289 YAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  +  E+D+     K     D VL+DAPC+  G ++R+PD  W    + + K    Q++
Sbjct: 275 HNIETREIDSTKVIKKLYNSADRVLIDAPCTGLGVLKRNPDAKWKLQPEFLDKITKTQQE 334

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAM 405
           +L      VK GG +V++ CS+  Q++ + +   L   +     LV  N           
Sbjct: 335 ILQSYSRIVKSGGKLVYATCSILPQENNDQIIAFLASEAGKDFTLVKENK---------- 384

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                            +    SG DGF+   L + 
Sbjct: 385 -----------------VYASDSGYDGFYMTLLEKK 403


>gi|76812251|ref|YP_331765.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1710b]
 gi|76581704|gb|ABA51179.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1710b]
          Length = 519

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 88  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 145

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 146 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 202

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+             +     W+ + +E  +       ++        + L V 
Sbjct: 203 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 261

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 262 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 321

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 322 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 381

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 382 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 441

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 442 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 493

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 494 ---PAVGGSGESGRHVDHDGFFYARFQK 518


>gi|115525266|ref|YP_782177.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115519213|gb|ABJ07197.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris BisA53]
          Length = 434

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 155/466 (33%), Gaps = 57/466 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  ++  +  +R+  +  L        F      D+  +  +    LR 
Sbjct: 1   MTP--AARLSAAIEVIEAIETQRVPASQALKEWGTAHRFAG--SGDRAAIAGLTWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++              +  +L++                D           +R 
Sbjct: 57  RASSAYLMQADTGR------ARVLGMLKL----------ERGLGADAIGSLC---DGSRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             + +++  +     +             PEW    L   +G++RV   + A  S   +D
Sbjct: 98  APEPLSAAEQAALASRTLADAPAPIAGDYPEWLDAELAAVFGEDRVAEAT-AMASRAPLD 156

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227
           L V          L ++                           + S   F +G   VQD
Sbjct: 157 LRVNTLKAKPEKMLASLAHLRATPTPWSPIGLRIELSADARNPGVQSEEDFIKGAIEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +            V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAALFSAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDSDKRQLAPIFERLS 276

Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  DI                 D VL+DAPCS TGT RR+PD  W      +    
Sbjct: 277 RAGVHNADIRAPKGEADPLADIHGSADLVLIDAPCSGTGTWRRNPDAKWRMRPGALEVRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396
             Q  +L + +  VKPGG + +  CS+   ++   +++ L   P    L     A     
Sbjct: 337 KDQAAVLERAVPLVKPGGRIAYVTCSVLSGENNGQIRQFLARHPDFAVLPAEQVASVLWD 396

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +    A  +SPEG +         +    +G DGFF   L+R  
Sbjct: 397 KAEDFLAAALVSPEGLL---------LTPRRTGTDGFFVSVLKRTA 433


>gi|319899245|ref|YP_004159338.1| SUN-family protein [Bartonella clarridgeiae 73]
 gi|319403209|emb|CBI76768.1| SUN-family protein [Bartonella clarridgeiae 73]
          Length = 428

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 148/438 (33%), Gaps = 25/438 (5%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +       L        F  +S  D+  +  IV   LR    +   +D
Sbjct: 8   QAAIDVLKEIEMRYRPAGEALKDWGLSHRFAGVS--DRAAIGTIVYDVLRRRYSLQWRMD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                       +L+ L+  ++     + +     +      A +    +         L
Sbjct: 66  S----------DNLRDLVFGTLFDSGMMTIEQVDKILEGDRFAPQLLAPQQRQAWQQRQL 115

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185
                     + +     + P +    +          ++    ++  +     L     
Sbjct: 116 VNAPDYIRADIPQWCQAHLYPLFADNWIREAAALATRPSLDLRVNSLKATPEKVLKALEK 175

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            +  +       L    I   +   ++ + P F +G + +QD  + I   L      + +
Sbjct: 176 TKVKSFSWFQQALRIEPIEKFKRHPNVQAKPAFQKGYFEIQDLGSQIVSYLIEAKAGMQL 235

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD CA  GGKT   A  + +  ++ A D  K RL  +   L R  ++             
Sbjct: 236 LDYCAGAGGKTLALAANMDNRGQIYAYDSKKVRLAPIFNRLRRAGIHNVQPRAHKEELKS 295

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                D VL+D PCS TG  RR PD  W      + +    Q  +L + + +++PGG + 
Sbjct: 296 LIGKMDIVLLDTPCSGTGIWRRRPDAKWRLTLQQLKQRQEEQFAILNEALIYIRPGGRLA 355

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +  CSL   ++EE + + L+         P+N         + ++       +  +    
Sbjct: 356 YITCSLFNDENEEQISRFLQKHSNF---SPINMQTLWHRHFSHSIIQP----VFSNYGLT 408

Query: 423 IDGVSSGMDGFFAVALRR 440
           +   ++  DGFF   L++
Sbjct: 409 LSPAATKTDGFFLSILQK 426


>gi|86750301|ref|YP_486797.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86573329|gb|ABD07886.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 434

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 152/467 (32%), Gaps = 59/467 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  L++ +  +RI     L        +      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIDLIATIDGQRIPAAKALKEWGTAHRYAG--SGDRSAIAGLVWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                 ++D             +  +LR+   +                    A      
Sbjct: 57  RASSAFLMDDDSAR------ARVLGMLRIERGL---------------TTEAIAALCDGG 95

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL- 176
           R   + +          +             PEW    L   +G ERV   +        
Sbjct: 96  RFAPEPLTDAEHAALSGRTLDAAPPHVAGDYPEWLDGALAEVFGDERVAEAAAMASRAPL 155

Query: 177 YIDLTVKFDIET----WAHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQ 226
            + +                L A   P   + L+    +      + + P F +G   VQ
Sbjct: 156 DLRVNTLKGKPDKVLASLAHLGARATPWSPLGLRIELGADARNPGVQAEPDFIKGAIEVQ 215

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283
           D  + +   L        V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L
Sbjct: 216 DEGSQLAALLSAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDSDKRQLAPIHERL 275

Query: 284 DRLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            R  ++  DI                 D VLVDAPC+ TGT RR+PD  W      +   
Sbjct: 276 SRAGVHNCDIRAPKGPADTLSDIHASADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIR 335

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q ++L +  + VKPGG + +  CS+   ++   ++    + P      P   A    
Sbjct: 336 LKDQAEVLARAAALVKPGGRIAYVTCSVLPAENGAQIKAFTAAHPDFAVTPPAEVAATLW 395

Query: 401 IDMAMAL-----SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 L     S EG +         +    +G DGFF   LR+  
Sbjct: 396 DKAEAFLAATRTSSEGLL---------MTPRKTGTDGFFVSVLRKAA 433


>gi|27379096|ref|NP_770625.1| Sun protein [Bradyrhizobium japonicum USDA 110]
 gi|27352246|dbj|BAC49250.1| Sun protein [Bradyrhizobium japonicum USDA 110]
          Length = 433

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 101/466 (21%), Positives = 159/466 (34%), Gaps = 57/466 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  L+  + R R+     L        F      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIELIDTIERDRVPAAKALKEWGTAHRFAG--SGDRAAIAGLVWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++D             L  +LR+       +D A  A +      A        
Sbjct: 57  YASSAFLMDADTAR------ARLIGMLRL----ERDMDAATMAALFDGSRFAPAPLTEAE 106

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A L +  LR             A     PEW    L   +G++R    +        +D
Sbjct: 107 QAALSHRSLRDAPA---------AIAGDYPEWLDPHLAKVFGEDRAAEAAAMASRAP-LD 156

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227
           L V          L A+                           I +   F +G   VQD
Sbjct: 157 LRVNTLKSNRDKVLRALAHLHAKPTPWSATGLRIELSADARNPGIQAEEDFIKGAVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +  Q         V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAAQFTAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDSDKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  D+                 D V++DAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNADVRTPKGEADPLADISATADLVVIDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396
             Q ++L + +  VK GG + +  CS+  +++ E V+  +   P    + P   A     
Sbjct: 337 RDQAEVLERAVPLVKLGGRIAYITCSVLAEENGEQVRAFIGRHPEFAVVPPEQIASVLWD 396

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             +    A   SPEGW+         +    +G DGFF   L++  
Sbjct: 397 KAEDFAKAALQSPEGWL---------MTPRRTGTDGFFVSVLKKTA 433


>gi|56477026|ref|YP_158615.1| tRNA and rRNA cytosine-C5-methylase sun [Aromatoleum aromaticum
           EbN1]
 gi|56313069|emb|CAI07714.1| tRNA and rRNA cytosine-C5-methylases sun [Aromatoleum aromaticum
           EbN1]
          Length = 447

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 102/445 (22%), Positives = 180/445 (40%), Gaps = 49/445 (11%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ L+  V+    +LT   +     +         +  VR +   TLR   R D VL  +
Sbjct: 35  AASLVETVL-GGANLTEAYERLLRANPGW--PDATRGAVRDLAWGTLRDYGRGDVVLRRL 91

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           L   LP   ++L  +      ++ +     + VVD AV+ A           +VN +LR+
Sbjct: 92  LHKPLPVALHALLLVALH---RLEHRPDQAHTVVDQAVDAAA--VLAPGLKGVVNGVLRK 146

Query: 131 VSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
             R++ E    +    A     P W+  ++   +  +   A  +A      + L V    
Sbjct: 147 RLRDEHELAALVEADEAARYRHPAWWVAQVRAAWPGDW-EAALEAGNQRPPMALRVNRTR 205

Query: 187 E-------TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                      +             + + P  + SLPGFA G   VQDA A    +    
Sbjct: 206 ASVEAVEAELRNAGIGSRRLANDALVLDKPVPVASLPGFATGRVSVQDAGAQWAARWLDL 265

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
                VLD CAAPGGK A ++ +   ++ AL++  +R++++R NL+RL L A  ++  D 
Sbjct: 266 APGQRVLDACAAPGGKAAHILETKPVELVALELDPKRVQRIRDNLERLGLDA-QVLRADC 324

Query: 299 F---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                +   + FD +L D PCS++G  RRHPD+ W R  +D+ + A  Q  ++      +
Sbjct: 325 RALDTWWDGRPFDRILADVPCSASGVARRHPDIKWLRRREDVRRFAAQQADIVDALWPTL 384

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
            PGG +++  CS+  +++   + ++    P    L                       ++
Sbjct: 385 APGGRMLYVTCSVFNEENTAQIARLSARHPDLERLEIDGRLE---------------RQL 429

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P         ++  DGFF   L +
Sbjct: 430 LP---------ATDHDGFFYALLGK 445


>gi|167900770|ref|ZP_02487975.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei NCTC 13177]
          Length = 469

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 96  VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+             +     W+ + +E  +       ++        + L V 
Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 271

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIDENLARLSLTADVRVG 331

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468


>gi|53717766|ref|YP_106752.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
 gi|53724953|ref|YP_101986.1| sun protein [Burkholderia mallei ATCC 23344]
 gi|67642457|ref|ZP_00441213.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei GB8 horse 4]
 gi|121599506|ref|YP_994096.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei SAVP1]
 gi|124385742|ref|YP_001028242.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei NCTC 10229]
 gi|126451630|ref|YP_001064449.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1106a]
 gi|167003288|ref|ZP_02269077.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei PRL-20]
 gi|167717523|ref|ZP_02400759.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei DM98]
 gi|167813639|ref|ZP_02445319.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 91]
 gi|167843776|ref|ZP_02469284.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei B7210]
 gi|242316376|ref|ZP_04815392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1106b]
 gi|254176710|ref|ZP_04883367.1| sun protein [Burkholderia mallei ATCC 10399]
 gi|254197181|ref|ZP_04903604.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei S13]
 gi|254203667|ref|ZP_04910027.1| sun protein [Burkholderia mallei FMH]
 gi|254208643|ref|ZP_04914991.1| sun protein [Burkholderia mallei JHU]
 gi|254360303|ref|ZP_04976573.1| sun protein [Burkholderia mallei 2002721280]
 gi|52208180|emb|CAH34111.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
 gi|52428376|gb|AAU48969.1| sun protein [Burkholderia mallei ATCC 23344]
 gi|121228316|gb|ABM50834.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei SAVP1]
 gi|126225272|gb|ABN88812.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1106a]
 gi|147745179|gb|EDK52259.1| sun protein [Burkholderia mallei FMH]
 gi|147750519|gb|EDK57588.1| sun protein [Burkholderia mallei JHU]
 gi|148029543|gb|EDK87448.1| sun protein [Burkholderia mallei 2002721280]
 gi|160697751|gb|EDP87721.1| sun protein [Burkholderia mallei ATCC 10399]
 gi|169653923|gb|EDS86616.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei S13]
 gi|238523614|gb|EEP87051.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei GB8 horse 4]
 gi|242139615|gb|EES26017.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1106b]
 gi|243061145|gb|EES43331.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei PRL-20]
          Length = 469

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 96  VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+             +     W+ + +E  +       ++        + L V 
Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 271

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468


>gi|167892276|ref|ZP_02479678.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 7894]
          Length = 469

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 96  VAKAPPT---HVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+             +     W+ + +E  +       ++        + L V 
Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 271

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468


>gi|255034881|ref|YP_003085502.1| Fmu (Sun) domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254947637|gb|ACT92337.1| Fmu (Sun) domain protein [Dyadobacter fermentans DSM 18053]
          Length = 410

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 151/456 (33%), Gaps = 63/456 (13%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK        S   L  +  K      +++     +       RD+  +   V   +R+ 
Sbjct: 1   MKLHKGLVAASVEALQDIFIKNRQADRVVEQLLKSNKKWG--ARDRAFIAENVYGIVRWW 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL---YLD-VADYAVVDLAVEQAKRDKE 116
             +       +  ++    +       + V Q++   +LD +     +    E       
Sbjct: 59  RLVKYAAQ--IDKAVESDDFWR----IMGVWQLIRPVHLDGLEAPDSLPEWPEFVP---- 108

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISP 175
                  +N+ +  V     E L        IP+W  E      G        +    +P
Sbjct: 109 -------INAEI--VFERYREGLNTRKIAQSIPDWIDETGAAELGAAWDAELAALNHTAP 159

Query: 176 LYIDLT-----VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           + + +      V    E     +   +       + +   ++  L  F  G + VQDA +
Sbjct: 160 VVLRVNTLKTDVSTVRELLGADIAEPVPSVPEALVLKKRLNVSGLDSFKSGFFEVQDAGS 219

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
                       +SV+D CA  GGK+  L     +   + A+D+   +L++L     R  
Sbjct: 220 QWIAPYLDIREGMSVIDACAGAGGKSLHLAALLGNTGSILAMDIEHHKLQELERRAARNG 279

Query: 288 LYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +      +I  D       +  D +L+D PCS  G +RR+PD  W    + + K    Q 
Sbjct: 280 VTNLSTMLINSDKIIENLAETTDRLLLDVPCSGLGVLRRNPDSKWKLKPEFLDKIRKVQA 339

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      VK GG +V++ CS+   +SEE V+  ++        V  +           
Sbjct: 340 QILENYSKMVKKGGKMVYATCSILPSESEEQVRSFMKRHQADWNFVSEH----------- 388

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                           +      G DGF+   L R 
Sbjct: 389 ----------------RSSPARDGFDGFYMALLERK 408


>gi|90424557|ref|YP_532927.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18]
 gi|90106571|gb|ABD88608.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18]
          Length = 433

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 156/460 (33%), Gaps = 49/460 (10%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  L+  +  +R+     L        +      D+  +  +    LR 
Sbjct: 1   MTP--AARLSAAIELIDAIDSQRVPAAKALKEWGTAHRYAG--SGDRAAIAGLTWDVLRR 56

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
                 ++D       +       + L                     A   A      R
Sbjct: 57  RASSAWIMDSDTPRARVLGMLKLERGL--------------------EAEAIAALCDGGR 96

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
              + ++   +     +             PEW    L   +G +RV   + A  S   +
Sbjct: 97  FAPEPLSEAEQTALTSRTLDDAPPHVAGDYPEWLDGELAAVFGDDRVAEAT-AMASRAPL 155

Query: 179 DLTVKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQ 226
           DL V                L A   P   + L+    +    PG      F +G   VQ
Sbjct: 156 DLRVNTLKAKRDKVLGSLAHLGAKATPWSPLGLRIELGADARNPGIHSEEDFIKGGIEVQ 215

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283
           D  + +   L G      V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L
Sbjct: 216 DEGSQLAALLSGAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDHDKRQLAPIYERL 275

Query: 284 DRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
            R  ++  DI      +          D VL+DAPC+ TGT RR+PD  W      +   
Sbjct: 276 SRAGVHNCDIRTPKGPNDTLSDISGSADLVLIDAPCTGTGTWRRNPDAKWRMRPGALEVR 335

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L + +  VKPGG + +  CS+  Q++   +   +   P    +VPL       
Sbjct: 336 LKDQVAVLDRAVPLVKPGGRITYVTCSVLGQENGAQIAAFMARHP-EFAVVPLEQTAAVL 394

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            D A A      +    +    +    +G DGFF   +++
Sbjct: 395 WDKAEAFLAAALVS---EQGLLMTPRRTGTDGFFVSVMKK 431


>gi|167917035|ref|ZP_02504126.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei BCC215]
          Length = 469

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 103/448 (22%), Positives = 175/448 (39%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 96  VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+ E           +     W+ + +E  +       ++        + L V 
Sbjct: 153 LRRFLRERAEWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLAAEW 271

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468


>gi|126439349|ref|YP_001057209.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 668]
 gi|167908993|ref|ZP_02496084.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 112]
 gi|217424987|ref|ZP_03456483.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 576]
 gi|254295711|ref|ZP_04963168.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 406e]
 gi|126218842|gb|ABN82348.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 668]
 gi|157805800|gb|EDO82970.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 406e]
 gi|217392007|gb|EEC32033.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 576]
          Length = 469

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 96  VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+             +     W+ + +E  +       ++        + L V 
Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLAAEW 271

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468


>gi|317050738|ref|YP_004111854.1| Fmu (Sun) domain-containing protein [Desulfurispirillum indicum S5]
 gi|316945822|gb|ADU65298.1| Fmu (Sun) domain protein [Desulfurispirillum indicum S5]
          Length = 417

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 143/413 (34%), Gaps = 37/413 (8%)

Query: 40  LLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVA 99
            L    +   R +V+   R L  ++++L       L   +  ++ LL +SV +I +L   
Sbjct: 34  KLPPEQRGNFREMVSGAFRQLLLLESILKASCDRPLRELEPFVKALLVLSVYRIYFLQDP 93

Query: 100 DYAVVDLAVEQAKRDKENRHFAKL------VNSILRRVSREKIELLQRIAGISIIPEWFK 153
           DY VVD A      D +      +          L        +  + ++    +P W  
Sbjct: 94  DYTVVDEANGLCAHDGQKSFVNGVLRNVTRYRKPLEHFIYHGKDTDRHLSERFSVPRWIV 153

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           E L    G    +          ++                                   
Sbjct: 154 EELRVSRGDYASILEGLNQPQKTFVRNGRYLRRAATVQDDLRQG---------------- 197

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVS 272
                      V      + V   G  +   VLD+  APG K   L     +     D+S
Sbjct: 198 ---------AAVISPGGFLSVLHLGVGSGHDVLDMGCAPGAKFFLLQELDPRSLTGCDIS 248

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
            +RL  +    +RL L    +I  D        + FD + +D PC+++GT  +HP+  + 
Sbjct: 249 VKRLGTMYAEAERLGLPRPHLICGDGMSPPFADESFDRLYLDVPCTASGTFTKHPEGKFL 308

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
           R    + +    QR LL +    ++PGG++ ++ CS+  ++++ VV            L 
Sbjct: 309 RTPQGLEELLVTQRALLARTFHLLRPGGVLCYATCSVFDRENDGVVAWFCAQESRARVLR 368

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           P              L+    + ITP     ++  + G+DGF+   + R  QP
Sbjct: 369 PSVGLEDVDASCRHLLADS--LEITPHGFF-LNPAAHGLDGFYFSFIER-QQP 417


>gi|89891171|ref|ZP_01202678.1| tRNA and rRNA cytosine-C5-methylase [Flavobacteria bacterium BBFL7]
 gi|89516483|gb|EAS19143.1| tRNA and rRNA  cytosine-C5-methylase [Flavobacteria bacterium
           BBFL7]
          Length = 402

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 151/456 (33%), Gaps = 69/456 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L  +         ++              RD+  +       +R+ 
Sbjct: 1   MRFHHNLVQATVDALHNIFNDGKYADQVIQKILKRDTRWG--SRDRGFIAETTYDIVRYK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + +  +               R++                  V    +      +
Sbjct: 59  RLYAEIAN--VHEPFKPVDLW-----RMTA-----------------VWIVLKGHAVPAW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            +  N+  RR+     EL +       +P+W  E      G       + A      + L
Sbjct: 95  EEYYNTPERRIKGRFDELSKNRVFRESLPDWMDELALKELGGIW-EKEATALNKQADVVL 153

Query: 181 TVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231
                         KL +  +            + +   ++     F +G++ VQDA + 
Sbjct: 154 RANSLKTTPAELKEKLQSEEIAISQQERFPDALILKERANVFMTQAFKDGLFEVQDAGSQ 213

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                      + V+D CA  GGK   L   + +  ++ A D+ K +L +L+    R   
Sbjct: 214 TIAPFLQVEPGMRVMDACAGAGGKALHLAALMENKGQIIATDIYKSKLNELKRRARRAGA 273

Query: 289 YAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  +   +D+     K     D +L+DAPCS  G +RR+PD  W    + I +    Q+ 
Sbjct: 274 HNIETRLIDSTKVIKKLAGKMDRLLIDAPCSGLGVLRRNPDAKWKLQPEFIDEIRATQQD 333

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAM 405
           +L +  + VKP G++V++ CS+   ++E  VQ+ L+  +    ELV              
Sbjct: 334 ILQRYSTVVKPDGMMVYATCSILASENENQVQEFLKSEAGASFELV-------------- 379

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                          + +     G DGF+   +++ 
Sbjct: 380 -------------EEQSLLAHRDGFDGFYMALMKKK 402


>gi|309781493|ref|ZP_07676229.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
           5_7_47FAA]
 gi|308919906|gb|EFP65567.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
           5_7_47FAA]
          Length = 465

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 159/449 (35%), Gaps = 61/449 (13%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + +     L  R++ ++       LR              
Sbjct: 59  KVLARLLHFAAPADMVVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 112

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                            A   L +    +       A  +N +     
Sbjct: 113 SGT------------------------GPARRRLVLLGLLQTAGREAIAPFLNPVEAEWL 148

Query: 133 REKIELLQRIAGIS---IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
                  +          +P+W  + L   +G E   A++ A ++P  +DL V     + 
Sbjct: 149 DRWENRDRAALAARVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGER 208

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240
           +     L    +      L  +   +   P       F  G   VQD  + +  QL    
Sbjct: 209 DAVLATLAEAGIEGVAAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPK 268

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               V+D CA  GGKT  +   + S  ++ A D+S++RL  L   L R  L       +D
Sbjct: 269 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDISEKRLSNLGPRLARSGLSNVHPGRID 328

Query: 298 AFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           +             D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L     
Sbjct: 329 SEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAAR 388

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K GG +V++ CS+  +++++VV++ L +    V +        + I + M      ++
Sbjct: 389 LLKAGGRLVYATCSVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGP----YL 444

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            + P         +   DGFFA  L R  
Sbjct: 445 ELYPH--------THQTDGFFAAVLERRA 465


>gi|90418683|ref|ZP_01226594.1| putative SUN-family protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336763|gb|EAS50468.1| putative SUN-family protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 433

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 158/448 (35%), Gaps = 39/448 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L+ +  +R  +   L        F      D+  +  IV   LR    +   ++
Sbjct: 8   AAAIEILTDIEARRRPVADALKDWGLSHRFAG--SGDRAAIGNIVYDVLRRRRSLAWRME 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
               +       ++     + +                  + A     +R   ++ ++  
Sbjct: 66  D--ETPTAMVFAAVLDSKGMGI-----------------KDMAIALDGDRFAPQMPSTDD 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
               R +       A  + +P+W  +RLE  +G E  +A + A      +D+ V     D
Sbjct: 107 FAAFRTRELSAAPGAVQADVPDWLADRLEAAFG-EAWIAEAAALSDRPPLDMRVNTLRAD 165

Query: 186 IETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            +  A  L              L    I       ++    GF +G + +QD  + I   
Sbjct: 166 RDKVAKALTPFAATATALAPQGLRIPPIAGDGRHPNVQVEAGFQKGWFEIQDEGSQIVAL 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G    + VLD CA  GGKT   A  + +  ++ A D  ++RL  +   L R  +    
Sbjct: 226 LAGAAPGMQVLDFCAGAGGKTLALAASMENTGQIHAYDSDRQRLAPIHDRLKRAEVRNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +          +   D VLVDAPC+ TGT RR PD  W      + K    Q  +L    
Sbjct: 286 VHAPRDDIGELEGRMDLVLVDAPCTGTGTWRRRPDAKWRLAERQLDKRLEEQDAVLDAAA 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            FVKPGG +V+  CSL  +++   V   L         V   +  W    +  A      
Sbjct: 346 RFVKPGGRLVYITCSLLPEENGARVAAFLERDAGAEFKVADAAGRWAEA-LPEAPKAYHA 404

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +       +   ++G DGFF   L R
Sbjct: 405 SALGDGTTLTLTPRTTGTDGFFFAVLER 432


>gi|134095648|ref|YP_001100723.1| putative NOL1/NOP2/sun family protein [Herminiimonas
           arsenicoxydans]
          Length = 346

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 139/314 (44%), Gaps = 28/314 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
            + +PEW  ++L    G+   L ++ A   P  +DL V       E    +L    +   
Sbjct: 45  RANLPEWLFDKLVARDGEAATLELAYAMNQPAPLDLRVNAIKATREDVVAELAKAPILCE 104

Query: 202 GIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
                 L   +       +LP F  G   VQD  + +  Q+ G      V+D CA  GGK
Sbjct: 105 LTPFAPLGIRVIKKPALQNLPLFKSGAIEVQDEGSQLLSQIVGAKRGEMVVDFCAGAGGK 164

Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFD 308
           T      + +  ++ A D+S++RL KL+  L R  L          E DA         D
Sbjct: 165 TLSLGATMRNTGRLYAFDISEKRLVKLKPRLARSGLSNVHPVQIAHENDAKVKRLAGKID 224

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VLVDAPCS  GT+RR+PDV W +    +V+    Q  +L      VK GG +V++ CS+
Sbjct: 225 RVLVDAPCSGLGTLRRNPDVKWRQTPQSLVELNAKQASILAGAARLVKAGGRLVYATCSI 284

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
             +++E +V++ L +      LVP++    +     + L+ + +++++P           
Sbjct: 285 LDEENEAIVEQFLAAR-EDFVLVPMSEVLAE---QKVDLAMDKYLKLSP--------AKH 332

Query: 429 GMDGFFAVALRRLI 442
             DGFFA  L+R  
Sbjct: 333 QTDGFFAAVLQRKT 346


>gi|167568296|ref|ZP_02361170.1| sun protein [Burkholderia oklahomensis C6786]
          Length = 470

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 167/414 (40%), Gaps = 34/414 (8%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD----VADY 101
           +  ++ I    +R     D ++   +  +       +  LL  + A ++  D     A +
Sbjct: 71  RGAIQDIAYRAVRRRGTADWLIAQFVAKAP---HAHVHALLVCAFALLVDDDEHAAYAPF 127

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLE 157
            VVD AV      +E      LVN++LRR  RE+                   W+ + +E
Sbjct: 128 TVVDQAVTAVGARRECSFAKGLVNAVLRRFLRERAAWLERLQSDRRARWNYETWWIDAVE 187

Query: 158 NFYGKERVLAISDACISPL-YIDLTVKFDIETW------AHKLNAVMLPTGGIRLKELPE 210
             +       ++         + +  +            A +++A  +    IRL   P 
Sbjct: 188 RAWPDAWQRMLAAGDAPGPLTLRVNARRMAADAYLDVLRAEQIDAEKIGRHAIRLA-SPL 246

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTAL 269
            +  +PGF +G+  VQDA A +  +  G  + + VLD CAAPGGKT  ++  + A+V AL
Sbjct: 247 PVERIPGFVDGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVAL 306

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +    R  ++  NL RL L A+       D   +   + FD +L D PCS++G +RRHPD
Sbjct: 307 ESDPARAPRIGENLARLSLAADVRIGDAGDPAQWHDGRPFDRILADVPCSASGIVRRHPD 366

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W R   DI      QR++L      VKPGG ++++ CS+  ++ E   +    +    
Sbjct: 367 IRWLRRAADIPALVDEQRRILAALWPLVKPGGELLYATCSIFPEEGELQARWFGDAYQDA 426

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS-GMDGFFAVALRR 440
           V L        +                 P +    +       DGFF    ++
Sbjct: 427 VRLDAPGQLLPQGASGGA-----------PAVGGSSEPGRHVDHDGFFYARFQK 469


>gi|298208627|ref|YP_003716806.1| putative sun protein [Croceibacter atlanticus HTCC2559]
 gi|83848550|gb|EAP86419.1| putative sun protein [Croceibacter atlanticus HTCC2559]
          Length = 403

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 159/454 (35%), Gaps = 67/454 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L  +  +       +              RD+  +       +R+ 
Sbjct: 1   MRLHRNLVFATIDALRDIFNEGKYADKEIGKALKRDKRWG--ARDRAFIAETTYDIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + +  +     R+      L R+                   V    R      +
Sbjct: 59  RLYAEIAE--VKEPFSRE-----NLFRLFA-----------------VWCVLRGINLPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI-- 178
            ++  +  RR+     EL +       IP+W  E  E   GK     I+        I  
Sbjct: 95  PQIEPTPTRRIKGRFDELSKIRKIRESIPDWMDELGEKELGKVWDKEIAALNEQAPVILR 154

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232
             + K D       L    +    ++  +        +++ +   F +G++ VQDA++ +
Sbjct: 155 ANSFKTDTRKLKSLLLDENIVVQPVKGYDDALQLVERQNVFTTKAFKDGLFEVQDANSQL 214

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                   N + V+D CA  GGK+  L   + +  ++ ALD+   +L++L+    R   +
Sbjct: 215 VASFLDVENGMRVIDTCAGAGGKSLHLAALMENKGQIIALDIYANKLKELKRRARRAGAH 274

Query: 290 AEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             +   +D+     K     D VL+DAPCS  G + R+PD  W  + + + K    Q ++
Sbjct: 275 NIEARHIDSTKVVKKLYNSADRVLIDAPCSGLGVLSRNPDAKWKLEPEFLDKLRNTQAEI 334

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMA 406
           L      VK GG +V++ CS+   ++ E V+  L+       +L+               
Sbjct: 335 LNSYSKMVKSGGKMVYATCSILPSENNEQVKAFLKRDEGKEFKLI--------------- 379

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         + +   +SG DGF+   L +
Sbjct: 380 ------------KDKSMLSSTSGYDGFYMALLEK 401


>gi|237810344|ref|YP_002894795.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei MSHR346]
 gi|237505926|gb|ACQ98244.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei MSHR346]
          Length = 469

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 96  VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+             +     W+ + +E  +       ++        + L V 
Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAVGDAPGP-LTLRVN 211

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLAAEW 271

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468


>gi|332293363|ref|YP_004431972.1| Fmu (Sun) domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171449|gb|AEE20704.1| Fmu (Sun) domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 403

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 165/458 (36%), Gaps = 74/458 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N    +   L  +         +L              RD+  +   V   +R+ 
Sbjct: 1   MKLHRNLVFAAVDALGMIFNDGEQADKVLRKVLKFDKRWG--SRDRGFIAETVYDIVRWQ 58

Query: 61  PRIDAVLD---FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                + +        +L R  +++   LR  +      +V D                 
Sbjct: 59  RLYSEIAEVKAPYSRPNLFRL-FAVWATLR-GI------EVPD----------------- 93

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             + ++     RR+     EL +       IP+W  E  E   GK+    +  A  +   
Sbjct: 94  --WKQMEPIPTRRIKGRFDELSKIRKFKESIPDWMDEMGEKALGKKWAAEL-AALNTQAQ 150

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELP---------ESIVSLPGFAEGVWWVQDA 228
           + L       T     N +       RL +           +++ +   F  G + VQDA
Sbjct: 151 VVLRANTLKTTPKDLRNTLADQDIDTRLLDGYPDAIELVERKNVFTTEAFKNGFFEVQDA 210

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           S+    ++      + V+D CA  GGKT  L   + +  ++ A+D+ + +L++L+    R
Sbjct: 211 SSQKVARMLDVQPGMRVVDTCAGAGGKTLHLAALMENKGQIIAMDIYEGKLKELKRRSKR 270

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              +  +  E+ +     K     D VL+DAPC+  GTI+R+PD+ W    + I K    
Sbjct: 271 AGAHNIETREITSTKIFKKLYNTADRVLIDAPCTGLGTIKRNPDLKWKLQPEFIDKVVQR 330

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +LL      VK  G ++++ CS+  ++++E VQ  L +                    
Sbjct: 331 QAELLESYSKIVKEDGKMLYATCSILPRENQEQVQAFLAT----------------EQGQ 374

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
              L  E          E +    +G DGF+   L R+
Sbjct: 375 KFQLDKE----------ETVSPAKTGYDGFYMALLSRK 402


>gi|149925342|ref|ZP_01913606.1| hypothetical protein LMED105_03942 [Limnobacter sp. MED105]
 gi|149825459|gb|EDM84667.1| hypothetical protein LMED105_03942 [Limnobacter sp. MED105]
          Length = 455

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 178/450 (39%), Gaps = 47/450 (10%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +++ V+R+  SL   L  E         + +    ++ +    +R L R   VL  ++  
Sbjct: 26  VMTRVLREGRSLDQALAAETKGVK----TPQALGAIQDLAYFGMRNLGR-GQVLTRLISG 80

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDV----ADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                   L +L+ +    +L+ D       + VVD  V      ++      L N+ LR
Sbjct: 81  KTLLNPEPLNELMALG-FGLLWDDKNPKYPAHTVVDQMVYACTGSEQFARAKGLANACLR 139

Query: 130 RVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKF 184
              R+      +          +P W+ E+L+  + +     ++ A   P   + +  + 
Sbjct: 140 NFLRDSNTWRNKAMEDPLAQHNLPAWWIEKLKASHPQHWETMLAQAQSHPPLVVRVNTRS 199

Query: 185 DIE-TWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                +A +LNA  +          L   P  + +LPGF  G   VQD++A +  QL   
Sbjct: 200 SSASAYAEQLNAAGMQASVIGEQAVLLAKPVPVSALPGFDLGQVSVQDSAAQLASQLLNP 259

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDR--------LHLYA 290
            N   +LD CAAPGGKT  L+  +  ++ ALD S +RL ++  N+ R          L  
Sbjct: 260 QNGQRILDACAAPGGKTGHLLELADIELVALDSSPQRLGRVEDNIRRIAPTLNGQWDLRL 319

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +         +     FD +L D PC+ +G +RRHPD+ W R  DDI K +  Q K+L  
Sbjct: 320 KVAQAELLDTWWDGVPFDGILADVPCTGSGVVRRHPDIPWLRRPDDIAKLSQIQHKILNA 379

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             S +KPGG ++   CS+  ++   + +  L +    +     N+  W            
Sbjct: 380 LWSTLKPGGTLLLVTCSIFPEEGPLLAKAFLDNHSDAL---AQNAPGWVLPVAPAN---- 432

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 PD            DGFF     +
Sbjct: 433 ------PDQGFDASP-----DGFFYAKFEK 451


>gi|218295080|ref|ZP_03495916.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23]
 gi|218244283|gb|EED10808.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23]
          Length = 398

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 101/441 (22%), Positives = 178/441 (40%), Gaps = 47/441 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+     R ++  +L  V R       LLD     S    L +RD+  V  +V   LR L
Sbjct: 1   MRPTTP-RGLALAVLLEVDRGGR-AQLLLDRVLDRS---DLPERDKAYVTHLVYGVLRRL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D +L+  L  +  R    +  +LR+   + L L   D+A V   VE+AK    +   
Sbjct: 56  RLLDFLLEPHL-RAPDRLPKEVLWILRLGALEWL-LGKEDHARVSPWVEEAKA--RHPAL 111

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           + LVN++LRR+   +     R++    +P+W  +    F+G+   ++ ++    P  + +
Sbjct: 112 SGLVNAVLRRLKPREAPECVRLS----LPDWLCQAWRGFFGE---VSFAEGFNEPAPLFV 164

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T    ++     +    +  G                F+      Q+ ++    +L    
Sbjct: 165 TAYRPVDLRPGPIPGSYIWEGPK------------EDFSRLGLQPQNPASLFAAKLLEPK 212

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
               VLDLC   G K   L   GA+V + D++ RR +       RL L            
Sbjct: 213 PGERVLDLCGGAGLKAFYLASRGAEVVSYDLNPRRQKAGAKTARRLGLK--VTYRTQDLR 270

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              K+    VL+DAPC+ TGT R HP++ +    +D    A  Q +LL       + GG+
Sbjct: 271 EPLKEKAKKVLLDAPCTGTGTFRAHPELRYRLKPEDPKAMARLQLELLETAAGATEEGGV 330

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CSL +++ + V +  L   P                D+ + ++P           
Sbjct: 331 LVYAVCSLTEEEGKGVARAFLERHPEFRLEAFSCPLSVLKADLGVYVAP----------- 379

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                   G+DGF+ + LR++
Sbjct: 380 ------REGLDGFYYLRLRKV 394


>gi|134284097|ref|ZP_01770791.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 305]
 gi|134244549|gb|EBA44653.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 305]
          Length = 624

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 193 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 250

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  + P     +  LL  + A ++   +   A + VVD AV      +E      LVN++
Sbjct: 251 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 307

Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           LRR  RE+             +     W+ + +E  +       ++        + L V 
Sbjct: 308 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 366

Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236
                 + +   L A  +    I L          +  +PGFA+G+  VQDA A +  + 
Sbjct: 367 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLAAEW 426

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293
            G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+    
Sbjct: 427 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIDENLARLSLTADVRVG 486

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L     
Sbjct: 487 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 546

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VKPGG +++  CS+  ++ E   +    +    V L        +              
Sbjct: 547 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 598

Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440
              P +    +       DGFF    ++
Sbjct: 599 ---PAVGGSGESGRHVDHDGFFYARFQK 623


>gi|13475779|ref|NP_107346.1| SUN-family protein [Mesorhizobium loti MAFF303099]
 gi|14026535|dbj|BAB53132.1| SUN-family protein [Mesorhizobium loti MAFF303099]
          Length = 429

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/450 (20%), Positives = 162/450 (36%), Gaps = 48/450 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  + R+   +   L        F      D+  +  IV   LR       +L 
Sbjct: 8   AAAIEVLEDIGRRHRPVADALKDWGLSHRFAG--GGDRAAIGNIVYDALRHKRSAGWLLG 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                ++         LL     +  +   +    +D           ++    L+++  
Sbjct: 66  EDTPRAVG-----FGALLL----EWGHTAQSLNDALD----------GDKFAPPLLSATE 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
            +    +      +A  + IP+W  E L      E  +    A  +   +D+ V     D
Sbjct: 107 LQTIAGRGLADAPLAVRADIPDWC-EPLFERAFGEAWVGEGAALATRPPLDIRVNTLQAD 165

Query: 186 IETWAHKLNAVMLPTG----------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 +L                   I       ++ + P F +G + VQD  + I   
Sbjct: 166 RARVLKELADTGAQAARIAPLGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAAT 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G    + VLD CA  GGKT   +  + +  ++ A D  K RL  +   + R       
Sbjct: 226 LAGAEAGMQVLDFCAGAGGKTLALSAAMDNRGQIFAHDAEKARLAPIFDRIRRSENRNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           ++   A         D VLVDAPC+ +GT RR PD  W      +      Q  +L    
Sbjct: 286 VVTKPAELAPLSNHMDIVLVDAPCTGSGTWRRRPDAKWRLTQRQLDARKGEQSAILDAAQ 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE 410
           ++VKPGG++V+  CS+  +++ E +          V +    L  +++   + A  +   
Sbjct: 346 AYVKPGGLLVYITCSVFSEENGEQIATFRDRDSRFVPVDHRALWDSHFPGHEAAARIGSA 405

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G I ++P        + SG DGF+  ALRR
Sbjct: 406 GDISLSP--------LLSGTDGFYFCALRR 427


>gi|269793258|ref|YP_003318162.1| Fmu (Sun) domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100893|gb|ACZ19880.1| Fmu (Sun) domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 430

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 152/439 (34%), Gaps = 38/439 (8%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
           K    +  L +         +S  D+ L   +V   LR       +++  L       K 
Sbjct: 9   KGAFASEALRIVSE-----GMSPEDRRLASLLVYGALRRRSLWRNMVERRLKRPFKELKP 63

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL-- 138
             +  L +  A ++ L       +   + Q  + +       ++ ++L+R+ RE  +   
Sbjct: 64  VTRDGLIIGAAALMELRNFRPGPLYGGLSQCLKAEGAEDQVPILVAVLKRIEREGAQFLE 123

Query: 139 -------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
                  ++ +A    +P W      +  G +R   +        Y    V       A 
Sbjct: 124 RLSRSSDMRDLALYHGLPAWAANLFRDQMGTQRARELVRLLGMRRYTSFFVDPSRRASAL 183

Query: 192 KLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +                            +PG+ +G       S+   V+    L     
Sbjct: 184 EAMGRGGIRSWEGGLDCSIRTCSYGFPPEVPGYGDGTLTPMSESSMWIVKWASALWRGGP 243

Query: 246 L-DLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDY 301
           + D+C+  G K A L+      ++   D S  R    + +L+R  L     +   DA + 
Sbjct: 244 VLDMCSGRGLKGAALLTLLKDVELECWDKSFGRTRAAQGDLERRSLGGRGVVRCGDALEL 303

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P      V++DAPCS +GT  RHP+  W    +D+   +  Q +LL +    +  GG V
Sbjct: 304 EPLSEPSLVMLDAPCSGSGTWGRHPEGKWRVAPEDLEALSSLQVRLLERACGLIPKGGRV 363

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           ++S CSL ++++E VV  VL  +P  VE                         I P +  
Sbjct: 364 IYSTCSLFREENERVVGDVLSRNPQVVEEPIGAEGRLFVRGRPFGTY------IWPGLPW 417

Query: 422 KIDGVSSGMDGFFAVALRR 440
                   +DGF+   L R
Sbjct: 418 --------VDGFYCAVLYR 428


>gi|319945038|ref|ZP_08019300.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599]
 gi|319741608|gb|EFV94033.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599]
          Length = 491

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 97/473 (20%), Positives = 164/473 (34%), Gaps = 65/473 (13%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            ++  L  ++     L   +D    +     L       VR +     R    +  + + 
Sbjct: 40  AAAVSLRDMLA-GAHLDESIDHHTRE-----LPSASAKAVRNMAYDATRQQGLLAWLGER 93

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK---ENRHFAKLVNS 126
                 P    +LQ L    +AQ++        ++D  V    +      +   A  +N+
Sbjct: 94  FNRRQPPPLLAALQAL---GMAQLIDARRPVPVIIDQTVRAVGKLPEGAAHPGAAGFINA 150

Query: 127 ILRRVSREK---IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
            LRR +RE+   +            P W+  ++   +       ++ +      + L   
Sbjct: 151 TLRRFARERASLMAEPLPDEARFNHPGWWVAKVRKLWPDRWQEILTASLSRAP-LSLRAN 209

Query: 184 FD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                                L      + +    +  +PGFAEG+  VQD  A    QL
Sbjct: 210 RRQGGQLAAAARLQEAGIGFRLMGQDGLVLDQALPVDRIPGFAEGLMSVQDIGAQCAAQL 269

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDR---------- 285
                   +LD CAAPGGKTA  L ++  +V ALD+   R   +  NL R          
Sbjct: 270 LDPQPGERILDACAAPGGKTAHLLEMADCEVWALDIDPDRASIITNNLQRARVPLLSQDA 329

Query: 286 ------------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
                                +       D   +   + FD +L+DAPCS++G +RRHPD
Sbjct: 330 TEAPVAATPASEQAAGAVWGAHVLAADAGDPESWWDGRPFDRILLDAPCSASGIVRRHPD 389

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           VLW R   DI   +  Q +LL +    ++PGG ++++ CS+  ++ E+VV          
Sbjct: 390 VLWHRQRRDIATFSATQARLLEKLWPLLRPGGTLLYATCSIFPEEGEKVVSAFASRQADC 449

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +    W               ++ P             DGFF   L +
Sbjct: 450 RWQREVRVPGWADWPQGG--------QLLP-----RSDELHEHDGFFYALLSK 489


>gi|125718645|ref|YP_001035778.1| rRNA methyltransferase RsmB [Streptococcus sanguinis SK36]
 gi|125498562|gb|ABN45228.1| RRNA methyltransferase RsmB, putative [Streptococcus sanguinis
           SK36]
          Length = 355

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 161/371 (43%), Gaps = 30/371 (8%)

Query: 87  RVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLVNSILRR----VSREKIELLQ 140
            +S+ Q+LYLD +  +A V  A+E AK R + +  FA  +   + R             +
Sbjct: 1   MLSLYQMLYLDKIPQHAAVHEAIEIAKIRKRGSEKFANALLRRIEREGVADFETIKRKNK 60

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYIDLTVKFDIETWAHKLNAVML 198
           R +    +P W  + L   +G+ER LAI  +    S   I +T           L A   
Sbjct: 61  RYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASIRVTDMSRKAELRQLLGAEDS 120

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                 L +          F  G   +QD S+ +            +LD C+APGGKT  
Sbjct: 121 LLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLDIEGEEEILDACSAPGGKTVH 180

Query: 259 L--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCP---KKLFDAVLV 312
           +   ++   +TALD+   +LE +  N +RL L       ++DA          +FD +LV
Sbjct: 181 MASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKKLDATKVFETFGPDVFDKILV 240

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G IRR PD+ + ++  D       Q  +L      ++ GGI+ +S C++  ++
Sbjct: 241 DAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVCQSLRKGGIIAYSTCTIMAKE 300

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           + EVV+K L S P   +++  +            +  +G I ITP++ E         DG
Sbjct: 301 NFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGCILITPELYES--------DG 344

Query: 433 FFAVALRRLIQ 443
           FF    R++ +
Sbjct: 345 FFISQFRKISE 355


>gi|73543087|ref|YP_297607.1| Fmu, rRNA SAM-dependent methyltransferase [Ralstonia eutropha
           JMP134]
 gi|72120500|gb|AAZ62763.1| Fmu, rRNA SAM-dependent methyltransferase [Ralstonia eutropha
           JMP134]
          Length = 457

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 177/460 (38%), Gaps = 37/460 (8%)

Query: 10  VSSHLLSCVM-----RKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRI 63
           ++  +L   M      +  +L   ++          +     +  V+ +   T+R     
Sbjct: 8   LAFQMLGAAMAVRAVNEGTALPQAIEDTAAHLRLDRVRDAATRGAVQDLAYRTMRQFGTA 67

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVA--------DYAVVDLAVEQAKRDK 115
            A++  ++      +  SL  +    + +    D A         + VVD AV  A  + 
Sbjct: 68  RALVTELVTRPPGAQVDSLLAVALSLLLEGEEGDAAKAGRGGYNAFTVVDQAVSAAASEP 127

Query: 116 ENRHFAKLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           +  H   LVN++LRR  RE+     E+ +       +PEW+   L   Y  +       A
Sbjct: 128 KTAHARGLVNAVLRRFLRERKALLAEVSRDDQARWNLPEWWLRMLREAYPDQWTALAESA 187

Query: 172 CISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
            + P          + ++  +   A+   A                +  +PGF  G   V
Sbjct: 188 NVRPPMTLRVNTARIPLQQYLTDLANAGLAGQAIGTQAVRLVRAVPVSQVPGFDRGDVSV 247

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284
           QDA A +   L    + + VLD CAAPGGKT  L+  +   VTA++   +R  ++  NL 
Sbjct: 248 QDAGAQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIDVTAVESDAQRASRIDENLS 307

Query: 285 RLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL   A  +        D+   + FD +L D PCS++G +RRHPD+ W R   DI +   
Sbjct: 308 RLGKRASIVVGDASRPGDWWDGQQFDRILADVPCSASGIVRRHPDIRWLRREADIARLVN 367

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR+++ Q    +KPGGI+V+  CS+   + EE  +         + L         +  
Sbjct: 368 EQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGAQLADAIRLQAPGQLLPGTHA 427

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              A          P          S  DGFF    ++  
Sbjct: 428 TQPAGDNHAGQVSLP----------SDHDGFFYARFQKRA 457


>gi|20095066|ref|NP_614913.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19888345|gb|AAM02843.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 448

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 94/455 (20%), Positives = 173/455 (38%), Gaps = 38/455 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           L++   L  V  + + +   ++    D    +     +  V+A V  T++    +D ++ 
Sbjct: 5   LLAVKALVLVETRGMPIPEAVERTCRDRPIDV-----RRSVQAFVYETIKRRNLLDELVA 59

Query: 69  FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA------ 121
                     +   ++Q+LRV   ++        AV D  V  AKR   ++  A      
Sbjct: 60  AGSDAHPEDVRSPYVRQILRVGTLEMKIWRNPPPAVTDCMVRIAKRLVGSKAGAFVNAVL 119

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER--VLAISDACISPLYID 179
           + V  +  +   E     +R+A     PEWF   + + +  +R  V  +  A        
Sbjct: 120 RGVERVSVKDVLEDRPWTERLALKYGHPEWFVLYVLDLFEGDRSRVELLLRANNRVPPQY 179

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL--------PGFAEGVWWVQDASAS 231
           L +           + +    G +      E + +L          + EG++ VQD +++
Sbjct: 180 LRINRLKLDPLVAGDVLEREYGIVTEPTFLEEVRALVRGRGYGSRAWREGLFDVQDLASA 239

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                       +VLD+CAAPG KT      ++   +V A+D S+  L  L     RL +
Sbjct: 240 SASAALSAEPGETVLDVCAAPGSKTTHTAERMLDEGEVWAVDRSEWGLRVLERRCRRLGI 299

Query: 289 YAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                I  DA          + D +LVD PCS+TG   R+PD  W        + A  Q 
Sbjct: 300 TCVRTICRDARGLTVDDLPDVPDRILVDPPCSTTGVWNRNPDSRWKPKPL--ERFAERQW 357

Query: 346 KLLLQGISFVKPGG-IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           ++L   +   +  G  +V+S CS+  +++E +V++ L      V+LV         I+  
Sbjct: 358 EILEPALRIAEEHGCTLVYSTCSVSWEENEAIVKRALEEF--DVKLVDAGVLGSPGIEEF 415

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                 G+ ++      +         GFF   ++
Sbjct: 416 RGERFSGYKKV-----RRYWPFRHDTAGFFVAKMK 445


>gi|153003173|ref|YP_001377498.1| Fmu (Sun) domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026746|gb|ABS24514.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 437

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 164/442 (37%), Gaps = 52/442 (11%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V  +       L+           S  ++  V   V   +R+   +D +L         +
Sbjct: 27  VRDQGWLADRALERALRREPKPWAS--ERRAVAESVYGLIRWQGLLDFLLGG-------K 77

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              + +     +   + +  V            A R       A    +          E
Sbjct: 78  PDLATRY----AAWLVRFEGVPVAD--------AARRLAVPPAALAGLASAEARLAAVTE 125

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLN 194
            ++R++  + +P W  ER     G+     ++ A  +   + +       D E    KL 
Sbjct: 126 PVERLSLEASLPSWIAERFVRELGEVEARTLAAAMNARAPLTVRANLLKIDREELRGKLG 185

Query: 195 AVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
           +  + +          + +  ++  +L  F +G++ +QD  + +     G     +V+D 
Sbjct: 186 SEGMASEPTRFSPWGLVLDGHQNAFALGSFRDGLFEIQDEGSQLIALACGARPGKTVVDA 245

Query: 249 CAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII------EMDAF 299
           CA  GGK    A  + +   + ALD  + RL+  +    R  ++           E +A 
Sbjct: 246 CAGAGGKSLALAMEMRNKGSLHALDTDEGRLDDAKKRARRAGVHNLRARVIAAGAEAEAQ 305

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                   D VLVDAPCS  GT+RR PD  W    +D  + A  QR L+ +  + ++PGG
Sbjct: 306 LADLAGQADVVLVDAPCSGLGTLRRKPDARWRLTPEDPERFAGIQRTLVRRFAALLRPGG 365

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-IRITPD 418
            +V++ CS+ K ++ ++     R     V L P+  A     + A AL  +G  + + P 
Sbjct: 366 RLVYATCSVGKTENGDIADYAERE----VGLAPVPLAPLLGEERAKALGVDGARLELFPH 421

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
                     G DGFF  A  +
Sbjct: 422 --------RHGTDGFFVAAFEK 435


>gi|299065950|emb|CBJ37131.1| Putative ribosomal RNA small subunit methyltransferase B (rsmB)
           [Ralstonia solanacearum CMR15]
          Length = 464

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 160/446 (35%), Gaps = 55/446 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + +     L  R++ ++       LR              
Sbjct: 58  KVLARLLHFAAPADMIVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 111

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                             V+   ++ A R+             L R +
Sbjct: 112 SG--------------------SGPARRRLVLLGLLQTAGREAIAPFLTPQEAEWLDRWA 151

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                 L      + +P+W  + L   +G+     ++ A ++P  +DL V     + +  
Sbjct: 152 IIDRTALAPR-VRANLPDWLFDALVAQHGQAFTEMLAQAWLAPAPLDLRVNTLKGERDAV 210

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +      L  +   +   P       F  G   VQD  + +  QL     + 
Sbjct: 211 LATLVQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRSE 270

Query: 244 SVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D CA  GGK       + S  ++ A D+S++RL  L   L R  L       +D+  
Sbjct: 271 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDISEKRLANLGPRLARSGLSNVHPARIDSEH 330

Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K
Sbjct: 331 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 390

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CS+  +++++VV++ L      V +    +   + I + M      ++ + 
Sbjct: 391 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEALAAQKIPLEMGP----YLELY 446

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P +           DGFFA  L R  
Sbjct: 447 PHV--------HQTDGFFAAVLERRA 464


>gi|289644960|ref|ZP_06477001.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata]
 gi|289505233|gb|EFD26291.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata]
          Length = 518

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 98/509 (19%), Positives = 159/509 (31%), Gaps = 89/509 (17%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            ARL++  +L  V  +         L     A R LS RD+     +   TLR L  +D 
Sbjct: 24  PARLLAWEVLRAVDERGA---YANLLLPALLAGRQLSARDRGFATELTYGTLRALGVLDG 80

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH------ 119
           +L  V    +      ++  LR+   Q+L   V   A VD  V+  +R    R       
Sbjct: 81  LLATVANRPVDEVDPPVRDALRLGAYQLLRTRVPARAAVDSTVDLVRRTSGERPVRFANA 140

Query: 120 ----------FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
                           ++L        + +  +A ++  P W  E      G +     +
Sbjct: 141 VLRRLAARLEATGGDLAVLLAAPGYDDDPVGHLATVTAHPRWVVETFAAALGGDLARTRA 200

Query: 170 DACI--SPLYIDLTVKFD--------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
                       L  +                 L A   P     ++        LP   
Sbjct: 201 ALAADDERPSTHLVARPGLIDRDGLLRAARDAGLAAEPGPWSPYAVRLAGGDPGRLPAVL 260

Query: 220 EGVWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQLIV--SGAKVTALD-- 270
            G   VQD  + + V     +     +    +DLCA PGGKTA L       ++ A++  
Sbjct: 261 AGQAGVQDEGSQLVVAALSRVATVGTDTGVSVDLCAGPGGKTALLAGLLPRTRLVAVEPR 320

Query: 271 -----------------------------------VSKRRLEKLRCNLDRLHLYAEDIIE 295
                                               S     +              ++ 
Sbjct: 321 ATRALLVAAAVARPAPAPDPADAVSGPAAAVGDAAGSPGAGAEGMAGGPVAGRSNVVVVR 380

Query: 296 MDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
            D      +    D VL D PC+  G +RR P+  W R    +   +  QR+LL   +  
Sbjct: 381 ADGRAAPLRPGSADRVLADVPCTGLGALRRRPEARWRRTPAQVAPLSHLQRQLLAAAVDL 440

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           V+PGG+V +  CS    ++ EVV  V   L +  + V ++          D+        
Sbjct: 441 VRPGGVVGYVTCSPHPAETVEVVTDVVTRLAARGVGVSVLDAREYLPGVPDLGDGP---- 496

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++++ P           G D  F   LRR
Sbjct: 497 FVQLWPH--------RHGTDAMFLALLRR 517


>gi|316934640|ref|YP_004109622.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315602354|gb|ADU44889.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris DX-1]
          Length = 432

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/464 (20%), Positives = 154/464 (33%), Gaps = 57/464 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  L+S +  +RI     L        +      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIDLISAIDSQRIPAAKALKEWGTAHRYAG--SGDRSAIAGLVWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++D             +  +L++                  A   A     +R 
Sbjct: 57  RASSAFIMDSDTAR------ARVLGMLKL-------------ERGMTAEAIAALCDGSRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             + ++         +             PEW    L      E  +A + A  S   +D
Sbjct: 98  APEPLSDAEHAALSTRTLQGAPPHIAGDYPEWLDGAL-AEMFGEARVAEAAAMASRAPLD 156

Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIRLKELPES---------IVSLPGFAEGVWWVQD 227
           L V       +     L  +           L            + + P F +G   VQD
Sbjct: 157 LRVNSLKASRDKVLTSLAHLRAKASPWSPWGLRIDLPADARNPGVQAEPDFIKGAVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +            V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAALFSAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDGDKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  D+                 D VLVDAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNADVRAPKGDADPLADINGSADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396
             Q ++L +    VKPGG + +  CS+   ++   +Q    + P    + P   A     
Sbjct: 337 KDQAEVLGRAARLVKPGGRIAYVTCSVLAPENTGQIQAFTAAHPEFAVVPPAEVAAALWD 396

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    A   +PEG +         +    +G DGFF   LR+
Sbjct: 397 KAELFLAAAWTAPEGLL---------MTPRRTGTDGFFVSVLRK 431


>gi|114569729|ref|YP_756409.1| Fmu (Sun) domain-containing protein [Maricaulis maris MCS10]
 gi|114340191|gb|ABI65471.1| Fmu (Sun) domain protein [Maricaulis maris MCS10]
          Length = 437

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 152/461 (32%), Gaps = 45/461 (9%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M+ G  AR   +  +L  +  +   +   +        F      D+  +  +V   LR 
Sbjct: 1   MRDG--ARIAAAIEILETLQTQHQPVKDAVRDWGKAHRFAG--SGDRAWIGGLVLDALRH 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                  +D     +           L +              V  +  +          
Sbjct: 57  QSSTAYAMDGDAPRT-----------LAIGT---------VGRVWGVEADAIDAMFAGDD 96

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178
            A    +   R    +      +     +PEW +E L   +G+                +
Sbjct: 97  HAPEALTDAEREGLARDISDAPLHIRGDVPEWLEESLVRAFGEAAAEEGRKLSSRAPVDL 156

Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESI------------VSLPGFAEGVWWV 225
            +   K D +    ++++ +       L      I             S+P + +G   V
Sbjct: 157 RVNEAKVDFDRAFKEVSSKLKAAENSPLVRSGIRIPQRDPRGKSAAAESIPAYGKGWVEV 216

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCN 282
           QD  + +     G      +LD CA  GGKT  L     +  +V A D+  RRL  +   
Sbjct: 217 QDIGSQLAALASGARAGEQILDYCAGAGGKTLALSALLHNTGQVHAWDIDWRRLRAIWPR 276

Query: 283 LDRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           L R  +    +     D       +  D V  DAPC+ TGT RR PD  W      + + 
Sbjct: 277 LKRADVRNVQVHDDSEDKALGEFVEKMDVVFCDAPCTGTGTWRRRPDAKWRLKPAALDRR 336

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q  +L +   +VKPGG +V+  CS+  +++ + V   L       + VP+  A  +S
Sbjct: 337 MKEQDIVLERAHRYVKPGGRLVYITCSVLPEENGDRVNAFLDK-VEGFKPVPVMDALIQS 395

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +           +T     ++    +  DGF+   + R+
Sbjct: 396 GGLGDGAEALLESCLTEHGALQLSPGRTDTDGFYICVMERV 436


>gi|194291224|ref|YP_002007131.1| 16S rRNA m5c967 methyltransferase,
           s-adenosyl-l-methionine-dependent [Cupriavidus
           taiwanensis LMG 19424]
 gi|193225059|emb|CAQ71070.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Cupriavidus
           taiwanensis LMG 19424]
          Length = 477

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 105/475 (22%), Positives = 180/475 (37%), Gaps = 47/475 (9%)

Query: 10  VSSHLLSCV-----MRKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRI 63
           ++  +L        + +  +L   ++          +     +  ++ I   T+R     
Sbjct: 8   LAFQMLGAATAVRAVSEGTALPQAIEDAAAQLKLDRVRDAATRGALQDIAYRTMRQFGTA 67

Query: 64  DAVLDFVLISSL-----------------PRKKYSLQQLLRVSVAQILYL------DVAD 100
            A++  ++                            +           +         + 
Sbjct: 68  RALVTKLVTRPPGAQVDSLLAVALALLLEHGPGPRDRH---DGADAARHEADAGRPGYST 124

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERL 156
           + VVD AV  A  + +  H   LVN++LRR  RE+     E+ +       +P W+   L
Sbjct: 125 FTVVDQAVSAAASEPKTAHARGLVNAVLRRFLRERKALLAEVNRDEQARWNLPPWWLRLL 184

Query: 157 ENFYGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210
              Y  + +   + A + P          ++V       A+   A  +            
Sbjct: 185 REAYPDQWMALAASANVRPPMTVRVNTARVSVPQYRTDLANAGLAGHVVGPQAVRLVRAV 244

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTAL 269
            +  LPGFAEGV  VQDA A +   L    + + VLD CAAPGGKT  L+  +  +VTA+
Sbjct: 245 PVNQLPGFAEGVVSVQDAGAQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIEVTAV 304

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +   +R  ++  NL RL   A+ +        D+   + FD +L D PCS++G +RRHPD
Sbjct: 305 ESDPQRATRIGENLARLGKSAKIVVGDASRPADWWDGQPFDRILADVPCSASGIVRRHPD 364

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W R   DI +    QR+++ Q    +KPGGI+V+  CS+   + EE  +         
Sbjct: 365 IRWLRRETDIARLITEQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGEQLADA 424

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + L              +A   +G         +     S   DGFF    ++  
Sbjct: 425 IRLQA-PGQLLPGTHATLAAGADGDKATLDSSTDGTSLPSD-HDGFFYARFQKRA 477


>gi|217977506|ref|YP_002361653.1| Fmu (Sun) domain protein [Methylocella silvestris BL2]
 gi|217502882|gb|ACK50291.1| Fmu (Sun) domain protein [Methylocella silvestris BL2]
          Length = 430

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 96/463 (20%), Positives = 159/463 (34%), Gaps = 57/463 (12%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L  +   R   +  L        F     +D+  + ++V   LR 
Sbjct: 1   MIPG--ARVAAAIEILDDIETLRRPASDALKDWGLGHRFAG--SKDRSAIASLVFDALRK 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++D      +      +   LR++             + D  +E         H
Sbjct: 57  RASSAFLMDDGASRGI------MLGALRLA-----------RGLSDETIEAL--FTGEGH 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
               + S  R   +               P+W +  L   +G +R++A + A      +D
Sbjct: 98  TPAQLTSAERDRLKTGDLEGAPAHVAGDFPDWLEPALAAAFG-DRLIAETAALAERAPLD 156

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227
           L V          L  +                          S+   P +  G   +QD
Sbjct: 157 LRVNTLKGERDKALARLARLHAAPTRFSPVGLRLPLTPDGRNPSLAGEPDYIRGRVEIQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +   L         LDLCA  GGK    A ++ +  ++ A D   RRL  +   L 
Sbjct: 217 EGSQLAALLCAASPGEQALDLCAGGGGKALALAAMMQNKGQIYASDDEGRRLAPIYARLA 276

Query: 285 RLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R       +    + + F    +   D VL+DAPC+  G  RR+PD  W      +    
Sbjct: 277 RAGARNVQVRPPRKGEDFLADLEGRCDLVLIDAPCTGIGAWRRNPDAKWRIRPGALELRM 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS----PIPVELVPLNSAY 397
             Q +LL +   F+KP G +V+  CSL   ++EE V   L       P+P + +   +  
Sbjct: 337 AEQDQLLAEASRFLKPQGRIVYVTCSLLLDENEERVAAFLAGHAEFRPVPAQAMAERAGL 396

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +    A    P   +R++P         SSG DGF+   L R
Sbjct: 397 PELSGFASTRGP--GLRLSP--------ASSGTDGFYVAMLER 429


>gi|15964076|ref|NP_384429.1| NOL1/NOP2/SUN family signature protein [Sinorhizobium meliloti
           1021]
 gi|307301220|ref|ZP_07580982.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C]
 gi|307317891|ref|ZP_07597328.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83]
 gi|15073252|emb|CAC41760.1| probable Sun protein (FMU protein), (ribosomal RNA small subunit
           methyltransferase B, rRNA
           (cytosine-C(5)-)-methyltransferase) [Sinorhizobium
           meliloti 1021]
 gi|306896293|gb|EFN27042.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83]
 gi|306903676|gb|EFN34263.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C]
          Length = 429

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 147/447 (32%), Gaps = 45/447 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L  + ++R  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AIEVLDDIEKRRRPVADALKDWGLSHRFAG--SGDRAAIGNIVYDALRMKLSHAYLMD-- 65

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             + +      +                        A   A    ++R   +  +  + +
Sbjct: 66  SDTPVALGHAVM-----------------YRQWGFRADTLAAELADDRFAPEAPSEAMMK 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
              ++      +     IPEW +   E  +  + +     A      +DL V     T  
Sbjct: 109 AFAQRRLEDAPLHVQGDIPEWTQGSFEENFSDDWLAEA-KALAGRPTLDLRVNTLKATRE 167

Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237
             L A+                           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KVLKALERSGAEPAAIARHGVRIPAGEGASRLPNVTAEISFQKGWFEVQDEGSQIVADLA 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 LPGEAEQVLDYCAGGGGKTLAMAAAMNNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E            D VLVDAPC+ TGT RR PD  W     ++ +    Q + L     F
Sbjct: 288 ESTESLTSLIGRVDRVLVDAPCTGTGTWRRRPDTKWRLTQKNLEERLAQQEEALAGAAQF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           V+PGG +++  CS+  +++E  V      +P    L   ++                   
Sbjct: 348 VRPGGHLIYVTCSVLPEENEAQVYGFCEDNPEFEVLSAADNWAALFGTDKPQPWSADM-- 405

Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL-RR 440
                   +   S+G DGFF   + R+
Sbjct: 406 ----KTVTLTPASTGTDGFFFCLMGRK 428


>gi|20093882|ref|NP_613729.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19886817|gb|AAM01659.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 452

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 165/455 (36%), Gaps = 34/455 (7%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++ +       R SL   +     +   R    R    + A     ++ L  +DA L+
Sbjct: 8   ELTARVFVEWEETRRSLRECVKKVLLNEGVR--DHRVWGTIHAYCFELMKRLRTVDAFLE 65

Query: 69  FVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             + +  L      ++  LRV   ++ + DV      + AV+           A+ VN++
Sbjct: 66  ATIRNAKLFDLDPWVRNALRVGTFEMKFNDVKPAIATNEAVKIVVECVG-EGPARFVNAV 124

Query: 128 LRRVS--------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           L  V             + ++R+A     PEWF + L +  G+  +  + DA        
Sbjct: 125 LYDVERLELSDVLNRAKDTVERLAIEYSHPEWFVKHLMDLLGENELTKLMDANNREPERY 184

Query: 180 LTVKFD----------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           L V             +E     +         +R+ +     V    +  G    QD +
Sbjct: 185 LRVHAHMVDPDKAILALEDDGVAVEEDPDLPFMLRVVDHDVPPVRTEPYRRGWVAYQDKA 244

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
           ++             VLD CAAPGGK+A L        ++T +DV+ RRL ++R N  R 
Sbjct: 245 SAAAAYALRPEPGDRVLDACAAPGGKSAYLYALTEGEIELTCVDVNPRRLREMRRNFRRW 304

Query: 287 HLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            + A       +  Y    + FD  LVD PCSS+G   R P+  WT     + + A  Q 
Sbjct: 305 GIEARLRRADSSRLYRETDETFDLALVDPPCSSSGAYVRAPEAKWTVKWRHVKRYARGQL 364

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L      V+    +V+S CS+   + E VV++ LR         P             
Sbjct: 365 SILRGVAPLVER--TLVYSTCSVTVVEDESVVRRFLREFDEFEVEEPFGFGSPGFDSWMN 422

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              P        D + +        +GFF   L R
Sbjct: 423 ERYP------WADRVRRFWPHRHRTEGFFVARLVR 451


>gi|218659414|ref|ZP_03515344.1| RNA methyltransferase - sun protein [Rhizobium etli IE4771]
          Length = 311

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 163/301 (54%), Positives = 200/301 (66%), Gaps = 1/301 (0%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
            D++ VDLAVEQA +D  NR FAKLVN++LRR+ REK E+L  I  ++ +P WF  RLE 
Sbjct: 2   PDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKEEVLAEIGKVAPMPSWFLARLEK 61

Query: 159 FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF 218
            YG+E  LAIS + + P  IDLTVK D E WA +LN V LPTGG+RL      I SL GF
Sbjct: 62  AYGREAALAISQSQLEPAAIDLTVKSDAEGWAKRLNGVALPTGGVRLAAFDGGIPSLEGF 121

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278
            EG WWVQDA+ASIP +LFG L      DLCAAPGGKTAQLI++G  VTALD S+ RL +
Sbjct: 122 DEGAWWVQDAAASIPARLFGDLAGKRAADLCAAPGGKTAQLILAGGAVTALDQSESRLRR 181

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           LR NLDRL L AE +   D   + P + FDA+L+DAPCSSTGT RRHPDVLWT+  DDI 
Sbjct: 182 LRSNLDRLGLTAETV-AADLTTFKPPEGFDAILLDAPCSSTGTTRRHPDVLWTKGPDDIA 240

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A  Q +LL   ++ + PGG++VFSNCSLD  + EEVV +VL  +              
Sbjct: 241 RLAALQERLLRHALTLLTPGGMLVFSNCSLDPAEGEEVVARVLSDTGHDRARSDQRRRLG 300

Query: 399 K 399
            
Sbjct: 301 P 301


>gi|114798023|ref|YP_760510.1| NOL1/NOP2/sun domain-containing protein [Hyphomonas neptunium ATCC
           15444]
 gi|114738197|gb|ABI76322.1| NOL1/NOP2/sun domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 435

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 167/451 (37%), Gaps = 46/451 (10%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            +  +L+ V+ +   +   +      + +     +D+  V  +V  TLR           
Sbjct: 9   AAISVLTDVLERHQPVKIAVRDWGKSARYAG--SKDRAWVSGLVLDTLRRRNS------- 59

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
               +  R  ++  + L +    + +  D     +        ++   + H    + +  
Sbjct: 60  ----TAQRMGFTDPRALVLGT--LRFVWDWPAADI--------EQACYDEHGPTPLTNAE 105

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTV-KFDI 186
           R       +    I      PEW    +E  +G++    A + A  + + + +   K D 
Sbjct: 106 RDALLNASDFAAPIHVQGDFPEWMTPHMERAFGEDTVAEAQAMAVRADVDLRVNALKTDT 165

Query: 187 ETWAHKLNAV----------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           E  A  LN V                    +  +S+ ++P F++G   VQDA + I    
Sbjct: 166 EKAALPLNTVRAEPSKLLTNAFHIPARDPTQREDSLENIPAFSKGWVEVQDAGSQIAAAA 225

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   VLD CA  GGKT  L   +    ++ A D+  +RL  L   L R   +   +
Sbjct: 226 ANAKPGEQVLDFCAGGGGKTLALAAPMGGKGQIFAYDIDSKRLSALVPRLKRSGTHNVQL 285

Query: 294 IEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +            +  D V VDAPC+ TGT RR PD  W    + + K    QR +L+  
Sbjct: 286 VHPSEGTSLDPLVEQMDLVFVDAPCTGTGTWRRRPDSKWRVRPNQLGKRIEDQRGILIDA 345

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
             FVKPGG ++++ CS   ++ E+ V + L            ++A        +      
Sbjct: 346 ARFVKPGGRLLYATCSFLIEEDEDRVAEFLS---GDTRFTEEDAAEAAIASGLLTDHGAE 402

Query: 412 WIRIT--PDMLEKIDGVSSGMDGFFAVALRR 440
            +R    P    ++  + +  DGFF   LRR
Sbjct: 403 IVRKYRGPTGSVRLTPLRASTDGFFFAVLRR 433


>gi|206558871|ref|YP_002229631.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           cenocepacia J2315]
 gi|198034908|emb|CAR50780.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           cenocepacia J2315]
          Length = 463

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 178/471 (37%), Gaps = 51/471 (10%)

Query: 2   KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
            SG  ARL + HL    L             +R+  +L   L   +        +   + 
Sbjct: 11  SSGRPARLAALHLAPDSLGFALDAAAQAVDAVRRGTALPAALSTVFAQMPSGAQALA-RG 69

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAV 103
             + +   T+R L   D ++   +  + P     +  +L  + A +L          + V
Sbjct: 70  ATQDVAYRTMRRLGSADWLIGKFVSKAPP---AHVHAVLAGAFALLLDPPDEAAYPAFTV 126

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENF 159
           VD AV      +E      +VN++LRR  RE+      +            W+ + ++  
Sbjct: 127 VDQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAAMQDDPVACWNYRAWWVDAVKRA 186

Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           +       ++                  V   ++T        +              + 
Sbjct: 187 WPDAWQAILAAGERQGPLTLRVNARRANVDAYLDTLRASGIEAVAIGRHAVRLASALPVD 246

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVS 272
            +PGFA+GV  VQDA A +  +  G  + + VLD CAAPGGKT  ++  + A+V AL+  
Sbjct: 247 RIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESD 306

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
             R  ++  NL RL L A ++   D      +   + FD +L D PCS++G +RRHPD+ 
Sbjct: 307 ATRAARIGENLVRLSL-AANVCVGDAGAPDAWYDGRPFDRILADVPCSASGIVRRHPDIR 365

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W R   DI      QR++L      VKPGG +++  CS+  ++ E   +    +    V 
Sbjct: 366 WLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEGQARWFEAACEDAVR 425

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L          +    A                    ++  DGFF    ++
Sbjct: 426 LDAPGQLLPGGVQGRAA--------------AGALDQNTDHDGFFYARFQK 462


>gi|311745455|ref|ZP_07719240.1| tRNA/rRNA cytosine-C5-methylase (sun family protein) [Algoriphagus
           sp. PR1]
 gi|311302389|gb|EAZ82227.2| tRNA/rRNA cytosine-C5-methylase (sun family protein) [Algoriphagus
           sp. PR1]
          Length = 395

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 162/456 (35%), Gaps = 76/456 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N        L+ +  +      +++     +       RD+  +       +R+ 
Sbjct: 1   MKLHNNTIRGVHSALAAIFEEGQYADKVIERTLKSNPKWG--SRDRSFIAETTYEMVRWW 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             I+ +         P                ++    +  +       +      ++R+
Sbjct: 59  RLINYL--------SPSNNPYD----LFGTYWLMQGHSLPPWE---EFEKINPDKLKDRY 103

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYI 178
                 +++                   IP+W +E  E   G        S    + + +
Sbjct: 104 EKLEDPALIES-----------------IPDWLQELGEKELGDLWEAEIHSLNQEAEVVL 146

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASAS 231
            +            L A    +  I        + +  +++   P F +G++ VQD S+ 
Sbjct: 147 RVNTLKATRERLKNLLAEDNISTHIIKGYKDALILDERQNVFRHPSFKQGMFEVQDGSSQ 206

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +  +       + V+D CA  GGK+     L+ +  KV ++DV + +L++ +    R  +
Sbjct: 207 LVAESLAVEPGMRVIDACAGAGGKSLHLAALMENKGKVLSMDVEEWKLQQTKLRARRDGV 266

Query: 289 YAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +IE        K+  D +L+D PCS  G ++R+PD  W  + + I K    Q++
Sbjct: 267 SIIERKVIENSKTIKRLKESADRLLLDVPCSGLGVLKRNPDTKWKLNPESIEKVKQTQQE 326

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAM 405
           +L    S +KPGG +V++ CS+   +++E VQK L   +    EL+              
Sbjct: 327 ILQNYPSMLKPGGQMVYATCSILPSENQEQVQKFLASEAGKNFELI-------------- 372

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                          +K+    SG DGF+   L + 
Sbjct: 373 -------------EDQKVLSHESGFDGFYIARLLKK 395


>gi|33594975|ref|NP_882618.1| hypothetical protein BPP0259 [Bordetella parapertussis 12822]
 gi|33565051|emb|CAE40000.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 474

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 178/453 (39%), Gaps = 61/453 (13%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
             +RK  SLT  L                +  V+AI    +R L   DAV + ++  S  
Sbjct: 56  QAVRKGRSLTDALAET---------PPALRPAVQAISFHAMRQLGWADAVAETLVRRSP- 105

Query: 77  RKKYSLQQLLRVSVAQILYLDV----------ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
                   LLRV+++ +               A + VVD AV  A   ++   +  L+N+
Sbjct: 106 --GPLFDALLRVALSLLRAAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNA 163

Query: 127 ILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            LRR  RE+  L      R A     P W+ E LE  Y  E+   I      P  + L V
Sbjct: 164 SLRRFLREREALQDSVAERPAARWNHPSWWVELLERAYP-EQWRGILAGANVPAPLTLRV 222

Query: 183 KFDIETWAH-------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T             A         +   P  +  LPG+  G W VQDA A +   
Sbjct: 223 NRRRATVEQVRQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAGAQLAAP 282

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    + + VLD CAAPGGKTA L+  +   + ALD   +RLE++  NL+RL L    + 
Sbjct: 283 LLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGLRTPRVR 342

Query: 295 EMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              A       +   + FDAVL D PC+++G +RRHPD+ W R  +D+ ++A  Q ++  
Sbjct: 343 LAAADASDLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIAD 402

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                V PGG +++  CS+   +  E  +   R       L                   
Sbjct: 403 ALWRTVAPGGRLLYVTCSVFPAEGREQTEAFARRHADAAPLDAPG--------------- 447

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               ++ P  ++         DGFF     +  
Sbjct: 448 ----QLLPVAIDATPQAQH--DGFFYALFAKRT 474


>gi|107024054|ref|YP_622381.1| sun protein [Burkholderia cenocepacia AU 1054]
 gi|116691141|ref|YP_836764.1| sun protein [Burkholderia cenocepacia HI2424]
 gi|105894243|gb|ABF77408.1| sun protein [Burkholderia cenocepacia AU 1054]
 gi|116649230|gb|ABK09871.1| sun protein [Burkholderia cenocepacia HI2424]
          Length = 463

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 180/471 (38%), Gaps = 51/471 (10%)

Query: 2   KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
            SG  ARL + HL    L             +R+  +L   L   +        +   + 
Sbjct: 11  SSGRPARLAALHLAPDSLGFALDAAAQAVDAVRRGTALPAALSTVFAQMPSGAQALA-RG 69

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAV 103
             + +   T+R L   D ++   +  + P     +  +L  + A +L          + V
Sbjct: 70  ATQDVAYRTMRRLGSADWLIGKFVSKAPP---AHVHAVLAGAFALLLDPPDEAAYPAFTV 126

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENF 159
           VD AV      +E      +VN++LRR  RE+      +            W+ + ++  
Sbjct: 127 VDQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAAMQDEPVARWNYRAWWVDAVKRA 186

Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           + +     ++                 +V   ++T                       + 
Sbjct: 187 WPEAWQAILAAGERQGPLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVE 246

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVS 272
            +PGFA+GV  VQDA A +  +     + + VLD CAAPGGKT  ++  + A+V AL+  
Sbjct: 247 RIPGFADGVVSVQDAGAQLAAEWLDARDGMRVLDACAAPGGKTGHILELADAEVVALESD 306

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
             R  ++  NL RL L A ++   D   +  +   + FD +L D PCS++G +RRHPD+ 
Sbjct: 307 ATRAARIGENLVRLSL-AANVCVGDAGASGTWYDGRPFDRILADVPCSASGIVRRHPDIR 365

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W R   DI      QR++L      VKPGG +++  CS+  ++ E   +    +    V 
Sbjct: 366 WLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVR 425

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L         S+    A                    ++  DGFF    ++
Sbjct: 426 LDAPGQLLPGSVQGRAA--------------AGALDQNTDHDGFFYARFQK 462


>gi|167834982|ref|ZP_02461865.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           thailandensis MSMB43]
          Length = 470

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 175/449 (38%), Gaps = 36/449 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +    S+        +  ++ I    +RF    D ++  +
Sbjct: 38  AAQAVDAVNRGAALPAALAAVHASMSSNAQ--AAARGAIQDIAYRAMRFRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  LL  + A ++    +     + VVD AV      +E      LVN+
Sbjct: 96  VAKAPP---AHVHALLVCAFALLVDDGEHAAYTPFTVVDQAVTAIGARRECSFAKGLVNA 152

Query: 127 ILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LRR  RE+                   W+ + +E  +       ++         + + 
Sbjct: 153 VLRRFLRERAAWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDTPGPLTLRVN 212

Query: 182 VKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            +            A +++A  +    IRL      +  +PGFA+G+  VQDA A +  +
Sbjct: 213 ARRMTAQAYLDVLRAERIDAEKIGRHAIRLASAL-PVERIPGFADGLVSVQDAGAQLAAE 271

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI- 293
             G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+   
Sbjct: 272 WLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLAADVRV 331

Query: 294 -IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L    
Sbjct: 332 GDAGDPAQWHDGRPFDRVLADVPCSASGIMRRHPDIRWLRRAADIPALVAEQRRILSALW 391

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             VKPGG ++++ CS+   + E   +    +    V L        +             
Sbjct: 392 PLVKPGGELLYATCSIFPDEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA------- 444

Query: 413 IRITPDMLEKIDGVSS-GMDGFFAVALRR 440
               P +    +       DGFF    ++
Sbjct: 445 ----PAVGGSGEPGRHVDHDGFFYARFQK 469


>gi|85715674|ref|ZP_01046654.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A]
 gi|85697613|gb|EAQ35490.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A]
          Length = 432

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 94/459 (20%), Positives = 162/459 (35%), Gaps = 47/459 (10%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  ++  +  +R+     L        F      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIEVMKTIDGQRVPAAKALKEWGAAHRFAG--SGDRAAISGLVYDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++D                   +    +L L+    A V      A     +R 
Sbjct: 57  QASSAWIMDDDTPRGR-----------LLG---MLRLERGMNADV-----IASLCDGSRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             + +     +    +             PEW    L   +G +R    + A      +D
Sbjct: 98  APEPLTDGEWQALTARSLQEAPAHVAGDYPEWLDVYLAEAFGDDRAA-ETAAMARRAPLD 156

Query: 180 LTVKFDIETWAHKLNAVML------PTGGIRLKELPES------IVSLPGFAEGVWWVQD 227
           L V          L ++        P   + L+ +  +      I +   F +G   VQD
Sbjct: 157 LRVNTLKAKRDKVLGSLRHLGVTATPWSPLGLRIMLGADARNPGIQAEEEFIKGAVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +   L G      V+DLCA  GGKT     ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQVAALLSGVRPGEQVIDLCAGAGGKTLTLAAMMQGRGRLIATDRDKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  +I             ++  D VL+DAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNAEIRSPKGEAEPLSDIRESADLVLIDAPCTGTGTWRRNPDAKWRMRPGALEVRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q ++L +   FVKPGG V +  CS+  Q++ E ++K +        ++P +       
Sbjct: 337 RDQSEVLDRAAGFVKPGGRVAYVTCSVLPQENSEQIRKFISRH-QDFTVMPPSKVASMLW 395

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           D A       ++    +    +    +G DGFF   L +
Sbjct: 396 DKADDFLAAVYVS---NEGLLMTPRRTGTDGFFVSILAK 431


>gi|296161366|ref|ZP_06844173.1| sun protein [Burkholderia sp. Ch1-1]
 gi|295888352|gb|EFG68163.1| sun protein [Burkholderia sp. Ch1-1]
          Length = 457

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 112/450 (24%), Positives = 179/450 (39%), Gaps = 29/450 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +  V     +L   L   +  SA    +   +  V+ I   T+R L   + ++  +
Sbjct: 16  AGQAVGAVRL-GAALPAALQSVFV-SAPEGSAAAARGAVQDIAYRTMRRLATAEWLIAKL 73

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDV----ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  +L  S+  ++  +     A + VVD AV      +E      LVN+
Sbjct: 74  VKKAPP---PHVGHVLACSLVLLIDDEANAAYAPFTVVDQAVSAIAARRECAFAKGLVNA 130

Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           +LR   RE+                 P W+ + ++  +       ++        + L V
Sbjct: 131 VLRTFLREREALLSAAQTDEVACWNYPAWWIDAVKRAWPDAWQSVLAAGDTQGP-LTLRV 189

Query: 183 KFDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T    L  +                   P  +  +PGF +GV  VQDA A +  Q
Sbjct: 190 NARRSTVDAYLQVLQNHHIAASKGGDYAVKLATPMPVDRIPGFNDGVVSVQDAGAQLAAQ 249

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--- 291
           L G  + + VLD CAAPGGKT  L+  +  ++ AL+    R  ++  NL RL L AE   
Sbjct: 250 LLGVRDGMRVLDACAAPGGKTGHLLELADLQLVALESDAARARRIGENLQRLKLEAEVRI 309

Query: 292 -DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            D      +     + FD +L D PCS++G +RRHPD+ W R   DI      QR++L  
Sbjct: 310 GDAGAPAKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVAEQRRILDA 369

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               VKPGG +++  CS+  ++ E   Q         V L         S+  A A +  
Sbjct: 370 LWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL-DAPGQLLPSVARAPADTSA 428

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G         E   G +S  DGFF    ++
Sbjct: 429 GSH--AGQSAEDSAGANSDHDGFFYARFQK 456


>gi|20093483|ref|NP_613330.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19886312|gb|AAM01260.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 444

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 102/452 (22%), Positives = 178/452 (39%), Gaps = 42/452 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV-NVTLRFLPRIDAVLDFV 70
           + +L+   R  +SL         D+ F + S R + + R ++     + L   + +LD V
Sbjct: 11  ARILAEHYRSGVSLKESFYRAL-DNPFSIPSHRARAIHRRLMELG--KRLGLCEEILDDV 67

Query: 71  LISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF----AKLVN 125
           + S         L+ +L  +  ++L+   +   V D A   AK    +R      A   +
Sbjct: 68  IQSGSFEDLGPELKGVLVTAADEMLFEGTSPALVTDAATRVAKELVSDRVADFVHAVCFD 127

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
                V R K      +      P  F + +     ++ +     AC  P    + V   
Sbjct: 128 LEKYDVDRLKRRGYDDLCLRHYFPPDFVDYVRRVLPEDEIEDFLRACNKPAVKYVRVNTL 187

Query: 185 --DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             D++    +L                +R+ E    IV    + EG+ + QD +++    
Sbjct: 188 RADVDEVRERLAEEGVLTEPDEHIPDLLRVVEEEIPIVRTEAWKEGLVFTQDKASAAVAH 247

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA-- 290
           +        V+DLCAAPGGKT   +       ++ A+D S  RL+ +R  L    +    
Sbjct: 248 VLDPQPGEFVVDLCAAPGGKTLHALCLMEGEGEILAVDKSDWRLDAMREKLAWQRVPDGV 307

Query: 291 EDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            ++   DA +   +  +  D  +VD PCS  G++++ P+  W      + + A  Q +LL
Sbjct: 308 VELRCADAREIPEELDEEADRAIVDPPCSGMGSVQKRPETRWNVTKKRVRRYAKLQSELL 367

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
              I  V+PGGIVV+S C+L   ++E V+++V R   + +E V L       +       
Sbjct: 368 EAAIKTVRPGGIVVYSTCTLTINENENVIRRVARRYDVTIEKVNLQFGRRGLVP------ 421

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G  R  P              GFF   LR+
Sbjct: 422 --GTRRFYPHTDRCQ--------GFFIAKLRK 443


>gi|323139063|ref|ZP_08074122.1| Fmu (Sun) domain protein [Methylocystis sp. ATCC 49242]
 gi|322395723|gb|EFX98265.1| Fmu (Sun) domain protein [Methylocystis sp. ATCC 49242]
          Length = 433

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 95/458 (20%), Positives = 161/458 (35%), Gaps = 48/458 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    +    +  +L  + R+R  +   L        F     +D+  + ++V   LR  
Sbjct: 1   MTPAAHV-SAAIEILDVLARRRRPVADALKEWGVSHRFAG--SKDRAAIASLVFDALRKA 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                V+              +   LR    +   +D A  + +      A     +   
Sbjct: 58  ASASHVMGADTPR------AQMLGALR----EARGMDAAAISALCTGERHAPPPLSDDER 107

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YID 179
           A+L ++ L                    PEW  +R  + +G       +         + 
Sbjct: 108 ARLESATLADAPDHV---------RGDYPEWLADRFASAFGSRAAEEGAALAARAPVDLR 158

Query: 180 LTV-KFDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGVWWVQDASA 230
           + + K   +    KL  +                 +    ++ +   + +G    QD ++
Sbjct: 159 VNILKGSRDQALEKLAHLSPAPTPLSPIGLRIEVGQGRGPALTAETAYVKGFVEPQDEAS 218

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   L        VLDLCA  GGK    A  + +  ++ A D   RRL  +   L+R  
Sbjct: 219 QLASLLCAASPGEQVLDLCAGGGGKALALAGQMHNRGQLYAYDSDGRRLMPIHERLERAG 278

Query: 288 LYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                +             +   D VL+DAPC+ TGT RRHPD  W      +      Q
Sbjct: 279 ARNIQVRAPRGKADVLADLEGRCDLVLIDAPCTGTGTWRRHPDAKWRLAPGALELRLKEQ 338

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS-IDM 403
             LL Q + FVKPGG + +  CS+  ++ EE +   L S    + L     A      ++
Sbjct: 339 ATLLEQAVRFVKPGGRLAYVTCSVLLEEDEEQIAVFLGSHSDFMALSGAEMAENAGLPEL 398

Query: 404 AMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           A   SP G  +R++P         +SG DGF+   L+R
Sbjct: 399 ARYASPHGPGLRLSP--------ATSGTDGFYVALLQR 428


>gi|158966689|ref|NP_620086.2| putative ribosomal RNA methyltransferase NOP2 [Mus musculus]
          Length = 794

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 134/327 (40%), Gaps = 32/327 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++   +L   +    ++   +A   P  I L            A  L      
Sbjct: 260 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 319

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 320 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 379

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 380 PGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 439

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI + A  Q++LLL  I  V    K GG +V+
Sbjct: 440 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVY 499

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 500 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQARRFHPTLRSTR 552

Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444
           +    +  MDGFF    ++    + QP
Sbjct: 553 RFYPHTHNMDGFFIAKFKKFSNSIPQP 579


>gi|74150573|dbj|BAE32311.1| unnamed protein product [Mus musculus]
          Length = 732

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 134/327 (40%), Gaps = 32/327 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++   +L   +    ++   +A   P  I L            A  L      
Sbjct: 260 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 319

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 320 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 379

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 380 PGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 439

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI + A  Q++LLL  I  V    K GG +V+
Sbjct: 440 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVY 499

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 500 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQARRFHPTLRSTR 552

Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444
           +    +  MDGFF    ++    + QP
Sbjct: 553 RFYPHTHNMDGFFIAKFKKFSNSIPQP 579


>gi|182678888|ref|YP_001833034.1| Fmu (Sun) domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634771|gb|ACB95545.1| Fmu (Sun) domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 430

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 91/461 (19%), Positives = 159/461 (34%), Gaps = 53/461 (11%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L+ +  +R      +        F     +D+  +  +V   LR 
Sbjct: 1   MIP--AARLSAAIEILADIETRRRPAADAVKDWGLAHRFAG--SKDRAAIAGLVYDALRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++               + +L  S+ Q+  L +     +      A     +  
Sbjct: 57  KASSAWIMGEDTP----------RAVLLGSLRQVQGLPLDAVEALFSGEGHAPALLSDAE 106

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             +  +  L              +     P+W +   +  +G                +D
Sbjct: 107 KQRYRDGTLDDAPA---------SVAGDFPQWLEPAFQRVFGALAAAEGEALAARAP-LD 156

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227
           L V       A  + A+                           +V+   + +G+  VQD
Sbjct: 157 LRVNLLKGDRAKAIKALAHLKPEPTPYSPFGLRLPLLPDGRAAPLVAEAAYVKGLVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +   L        VLDLCA  GGKT   A L+ +  ++ A D   RRL  +   L 
Sbjct: 217 EGSQLAALLAHAKPGEQVLDLCAGGGGKTLALAALMNNKGQIYASDNDGRRLAPIHERLK 276

Query: 285 RLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  +    +             +   D V VDAPC+ TGT RR+PD  W      + +  
Sbjct: 277 RADVRNVQVRAPRGRVAKLDDLEGRCDLVFVDAPCTGTGTWRRNPDAKWRIRPGALEERI 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q + L     +VKPGG +V++ CS+  +++E+ +   L+ +         + A    +
Sbjct: 337 KQQNETLATAARYVKPGGRIVYATCSVLAEENEDRITDFLKENAGFQARPAGDMAREAGL 396

Query: 402 DM--AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            M    A +    +R+TP         +SG DGF+ V L R
Sbjct: 397 PMLADFASTLGPGLRLTP--------RTSGTDGFYVVELTR 429


>gi|170734472|ref|YP_001766419.1| sun protein [Burkholderia cenocepacia MC0-3]
 gi|169817714|gb|ACA92297.1| sun protein [Burkholderia cenocepacia MC0-3]
          Length = 463

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 106/471 (22%), Positives = 180/471 (38%), Gaps = 51/471 (10%)

Query: 2   KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
            SG  ARL + HL    L             +R+  +L   L + +        +   + 
Sbjct: 11  SSGRPARLAALHLAPDSLGFALDAAAQAVDAVRRGTALPAALSVVFAQMPSGAQALA-RG 69

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAV 103
             + +   T+R L   D ++   +  + P     +  +L  + A +L          + V
Sbjct: 70  ATQDVAYRTMRRLGSADWLIGKFVSKAPP---AHVHAVLAGAFALLLDPPDEAAYPAFTV 126

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENF 159
           VD AV      +E      +VN++LRR  RE+      +            W+ + ++  
Sbjct: 127 VDQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAAMQDDPVARWNYRAWWVDAVKRA 186

Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           +       ++                 +V   ++T                       + 
Sbjct: 187 WPDAWQAILAAGEHQGPLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVE 246

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVS 272
            +PGFA+GV  VQDA A +  +  G  + + VLD CAAPGGKT  ++  + A+V AL+  
Sbjct: 247 RIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESD 306

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
             R  ++  NL RL L A ++   D      +   + FD +L D PCS++G +RRHPD+ 
Sbjct: 307 ATRAARIGENLVRLSL-AANVCVGDAGAPDTWYDGRPFDRILADVPCSASGIVRRHPDIR 365

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W R   DI      QR++L      VKPGG +++  CS+  ++ E   +    +    V 
Sbjct: 366 WLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVR 425

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L         S+    A                    ++  DGFF    ++
Sbjct: 426 LDAPGQLLPGSVQGRAA--------------AGALDQNTDHDGFFYARFQK 462


>gi|222112408|ref|YP_002554672.1| sun protein [Acidovorax ebreus TPSY]
 gi|221731852|gb|ACM34672.1| sun protein [Acidovorax ebreus TPSY]
          Length = 457

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 113/458 (24%), Positives = 178/458 (38%), Gaps = 54/458 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            ++   +        S T  L+               +  V+A++   LR L R  A+  
Sbjct: 25  ALALQAVRA----GQSGTVALETTAAAL---------RPGVQALLFQVLRHLGRAQALRR 71

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +   + P +  +L                A + +V+ AVE AKR    R  A  VN+ L
Sbjct: 72  QLAPRNPPPRVDALLCTALALAWDPQTAPYAPFTLVNQAVEAAKRHPATRAQASFVNACL 131

Query: 129 RRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK 183
           RR  RE+             +   P W+ +RL   +  +    +          + ++  
Sbjct: 132 RRFLRERDTLVAATQGDEVAVWNHPTWWIQRLRRDHPDQWQQILQANNAPAPMVLRISKS 191

Query: 184 FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPV---- 234
                   +    +         E      P  +  LPGFAEGV  VQDA+A +      
Sbjct: 192 KSTPALYQQALEAINIEAMAVGPEGLALARPVPVQQLPGFAEGVVSVQDAAAQMAAPLLL 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSG------AKVTALDVSKRRLEKLRCNLDRLHL 288
                   L +LD CAAPGGKTA L+          +VTAL+V   R E++  NL RL L
Sbjct: 252 NGLDAAQPLRLLDACAAPGGKTAHLLEWAAALRAPWRVTALEVDAARAERIHDNLHRLGL 311

Query: 289 YAEDIIE-----MDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            A+ ++       D +      + FDA+L+DAPC+++G +RRHPDV W R   D+ + A 
Sbjct: 312 SAQVLVADAAVPADWWQQASGGEPFDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAA 371

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL      ++PGG +++  CS+ + + +  +   L  +     L      +  S D
Sbjct: 372 QQSRLLAALWPLLRPGGRLLYCTCSVFRAEGDVQIAAFLAHNTDARLLPSPGHLFPGSPD 431

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               L   G                   DGFF   L +
Sbjct: 432 KRDGLRDNG---------------PGEHDGFFYALLHK 454


>gi|33599251|ref|NP_886811.1| hypothetical protein BB0262 [Bordetella bronchiseptica RB50]
 gi|33575297|emb|CAE30760.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 444

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 179/453 (39%), Gaps = 61/453 (13%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
             +RK  SLT  L                +  V+AI    +R L   DAV + ++  S  
Sbjct: 26  QAVRKGRSLTDALAET---------PPALRPAVQAISFHAMRQLGWADAVAETLVRRSP- 75

Query: 77  RKKYSLQQLLRVSVAQILYLDV----------ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
                   LLRV+++ +               A + VVD AV  A   ++   +  L+N+
Sbjct: 76  --GPLFDALLRVALSLLRAAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNA 133

Query: 127 ILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            LRR  RE+  L      R A     P W+ E LE  Y  E+   I      P  + L V
Sbjct: 134 SLRRFLREREALQDSVAERPAARWNHPSWWVELLERAYP-EQWRGILAGANVPAPLTLRV 192

Query: 183 KFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T      A+               +   P  +  LPG+  G W VQDA A +   
Sbjct: 193 NRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAGAQLAAP 252

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    + + VLD CAAPGGKTA L+  +   + ALD   +RLE++  NL+RL L    + 
Sbjct: 253 LLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGLRTPRVR 312

Query: 295 EMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              A       +   + FDAVL D PC+++G +RRHPD+ W R  +D+ ++A  Q ++  
Sbjct: 313 LAAADASDLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIAD 372

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                V PGG +++  CS+   +  E  +   R       L                   
Sbjct: 373 ALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPLDAPG--------------- 417

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               ++ P  ++         DGFF     +  
Sbjct: 418 ----QLLPVAIDATPQAQH--DGFFYALFAKRT 444


>gi|300690682|ref|YP_003751677.1| ribosomal RNA small subunit methyltransferase B (rsmB) [Ralstonia
           solanacearum PSI07]
 gi|299077742|emb|CBJ50380.1| Putative ribosomal RNA small subunit methyltransferase B (rsmB)
           [Ralstonia solanacearum PSI07]
          Length = 464

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 160/446 (35%), Gaps = 55/446 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + +     L  R++ ++       LR              
Sbjct: 58  KVLARLLHFAAPADMIVSQYFREH--HALGHRERGIIAEAAFAVLRRKVEF----GQFAE 111

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                         A   +V L + Q    +    F     +      
Sbjct: 112 SG---------------------SGPARRRLVLLGLLQTAGREAIAPFLTPPEAEWLDRW 150

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                        + +P+W  + L   +G+    A++ A ++P  +DL V     + +  
Sbjct: 151 ATIDRTALAPRVRANLPDWLFDALVAQHGQAFTEALAQAWLAPAPLDLRVNTLKGERDAV 210

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +      L  +   +   P       F  G   VQD  + +  QL       
Sbjct: 211 LATLVQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 270

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D CA  GGKT  +   + S  ++ A DVS++RL  L   L R  L       +D+  
Sbjct: 271 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLANLGPRLARSGLSNVHPARIDSEH 330

Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K
Sbjct: 331 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSGQAVEEMSAKQLSILASAARLLK 390

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CS+  +++++VV++ L      V +    +   + I + M      ++ + 
Sbjct: 391 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEALAAQKIPLEMGP----YLELY 446

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P +           DGFFA  L R  
Sbjct: 447 PHV--------HQTDGFFAAVLERRA 464


>gi|300796393|ref|NP_001178714.1| putative ribosomal RNA methyltransferase NOP2 [Rattus norvegicus]
 gi|109474224|ref|XP_001065060.1| PREDICTED: NOP2 nucleolar protein homolog (yeast) [Rattus
           norvegicus]
          Length = 772

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 134/327 (40%), Gaps = 32/327 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++   +L   +    ++   +A   P  I L            A  L      
Sbjct: 255 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 314

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 315 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 374

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    +   D   +      F
Sbjct: 375 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIVSHYDGRQFPKVVGGF 434

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI + A  Q++LLL  I  V    K GG +V+
Sbjct: 435 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVY 494

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 495 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRATR 547

Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444
           +    +  MDGFF    ++    + QP
Sbjct: 548 RFYPHTHNMDGFFIAKFKKFSNSIPQP 574


>gi|254246867|ref|ZP_04940188.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia
           PC184]
 gi|124871643|gb|EAY63359.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia
           PC184]
          Length = 463

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/470 (22%), Positives = 176/470 (37%), Gaps = 49/470 (10%)

Query: 2   KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
            SG  ARL + HL    L             +R+  +L   L   +        +   + 
Sbjct: 11  SSGRPARLAALHLAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMPSGAQALA-RG 69

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAV 103
             + +   T+R L   D ++   +  + P     +  +L  + A +L          + V
Sbjct: 70  ATQDVAYRTMRRLGSADWLIGKFVSKAPP---AHVHAVLAGAFALLLDPPDEAAYPAFTV 126

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENF 159
           VD AV      +E      +VN++LRR  RE+      +            W+ + ++  
Sbjct: 127 VDQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAAMQDDPVARWNYRAWWVDAVKRA 186

Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           +       ++                 +V   ++T                       + 
Sbjct: 187 WPDAWQAILAAGERQGPLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVE 246

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVS 272
            +PGFA+GV  VQDA A +  +  G  + + VLD CAAPGGKT  ++  + A+V AL+  
Sbjct: 247 RIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESD 306

Query: 273 KRRLEKLRCNLDRLHLY-AEDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             R  ++  NL RL L     +        +   + FD +L D PCS++G +RRHPD+ W
Sbjct: 307 ATRAARIGENLVRLSLAANVCVGDAGTPDTWYDGRPFDRILADVPCSASGIVRRHPDIRW 366

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            R   DI      QR++L      VKPGG +++  CS+  ++ E   +    +    V L
Sbjct: 367 LRREADIPALVAEQRRILWALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    S+    A                    ++  DGFF    ++
Sbjct: 427 DAPGQLLPGSVQGRAA--------------AGALDQNTDHDGFFYARFQK 462


>gi|192290881|ref|YP_001991486.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192284630|gb|ACF01011.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 433

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 99/464 (21%), Positives = 162/464 (34%), Gaps = 57/464 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  L++ +  +RI     L        +      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIDLIAAIDAQRIPAAKALKEWGTAHRYAG--SGDRSAIAGVVWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++D             +  +L++                  A   A     +R 
Sbjct: 57  RASCAYLMDADTPR------ARVLGMLKL-------------ERGMTAEAIAALCDGSRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             + ++         +             PEW    L      E  +A + A  S   +D
Sbjct: 98  APEPLSDAEHAALSTRTLDGAPPHIAGDYPEWLDGAL-AEMFGEARVAEAAAMASRAPLD 156

Query: 180 LTVKFDIETWAHKL------NAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQD 227
           L V     +   +L       A + P     L+    +      + + P F +G   VQD
Sbjct: 157 LRVNTLKASRDKELASLAHLGAKLAPWSPWGLRIELPADARNPGVQAEPDFIKGAVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +   L        V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAALLSAARPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDGDKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  ++             K   D VLVDAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNAEVRAPKGDADPLADIKGSADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396
             Q ++L +    VKPGG + +  CS+   ++   VQ    + P    + P   A     
Sbjct: 337 KDQAEVLARAARLVKPGGRIAYVTCSVLAPENTGQVQAFTAAHPEFAVVPPAEVAAALWD 396

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    A  +SPEG +         +    +G DGFF   L+R
Sbjct: 397 KAELFLAAAWISPEGLL---------MTPRRTGTDGFFVSVLKR 431


>gi|293602344|ref|ZP_06684790.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553]
 gi|292819106|gb|EFF78141.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553]
          Length = 445

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 186/441 (42%), Gaps = 47/441 (10%)

Query: 25  LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84
           +  +LD      A   +S   +   +A+    +R+L   DAV   ++         SL  
Sbjct: 25  VEGVLDGRSLTDALTDVSSALRPATQAVSFHAMRYLGWADAVGRELVQRYPSVLFESLLL 84

Query: 85  LLRV-------SVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
           +          + AQ+  + V A + VVD AV  A   +    F  ++N+ LRR  RE+ 
Sbjct: 85  VSLTLLKEEGEAAAQLPGMPVYAAHTVVDQAVTAASTTRSLASFKGMLNACLRRFLRERA 144

Query: 137 ELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
            L   +A         P W+ ++L   Y ++    I ++   P  + L V     T    
Sbjct: 145 ALEAAVADSPEAQWNHPGWWVKQLGIAYPQDWQR-ILESANVPAPLTLRVNRRRATRDQV 203

Query: 193 LNA-------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           L A                +   P+ +  LPGFAEG W VQDA A +  +L    + + V
Sbjct: 204 LAAFQDAGLQAEPVGQAGVVVGSPKPVTQLPGFAEGWWSVQDAGAQLAAELLAPADGMRV 263

Query: 246 LDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-----EMDAF 299
           LD C+APGGKTA L+  +   + ALD    RLE++  NLDRL L ++ +        D  
Sbjct: 264 LDACSAPGGKTAHLLELADIDLVALDADGERLERVEQNLDRLGLASDRVHLEAADAADLD 323

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   K FDAVL D PC+++G +RRHPD+ W R  +D+ ++A  Q ++L      V PGG
Sbjct: 324 AWWDGKPFDAVLADVPCTASGIVRRHPDIRWLRRENDVRRTATLQARILDSLWKTVAPGG 383

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +++  CS+   +      + ++  P    L                       ++ P  
Sbjct: 384 RLLYVTCSVFPIEGARQALEFMQRHPEAQRLDAPG-------------------QLLPVA 424

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           L+         DGFF     +
Sbjct: 425 LDATPAEQH--DGFFYALFAK 443


>gi|213027901|ref|ZP_03342348.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 289

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 137/307 (44%), Gaps = 35/307 (11%)

Query: 148 IPEWFKERLENFYGKERVLAIS-DACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRL 205
            P W  +RL+N Y  +    I  +    P+++ +       + W   L    +       
Sbjct: 5   HPGWLVKRLQNAYPTQWQRIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPD 64

Query: 206 KE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258
                    P  + +LPGFAEG   VQDASA          N   +LDLCAAPGGKT   
Sbjct: 65  YPDAVRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHI 124

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDA 314
             +   A V A+D+ ++RL ++  NL RL + A  + + D      +C ++ FD +L+DA
Sbjct: 125 LEVAPEADVLAVDIDEQRLSRVYDNLKRLGMKAT-VKQGDGRYPAQWCGEQQFDRILLDA 183

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS+TG IRRHPD+ W R   DI + A  Q ++L      +KPGG +V++ CS+  +++ 
Sbjct: 184 PCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENR 243

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           + ++  L+ +P                ++      EG                   DGFF
Sbjct: 244 DQIKAFLQRTPDAALSETGTPDQPGQQNLPGG--EEG-------------------DGFF 282

Query: 435 AVALRRL 441
              L + 
Sbjct: 283 YAKLIKK 289


>gi|81879892|sp|Q922K7|NOP2_MOUSE RecName: Full=Putative ribosomal RNA methyltransferase NOP2;
           AltName: Full=Nucleolar protein 1; AltName:
           Full=Nucleolar protein 2 homolog; AltName:
           Full=Proliferating-cell nucleolar antigen p120; AltName:
           Full=Proliferation-associated nucleolar protein p120
 gi|13938070|gb|AAH07151.1| NOP2 nucleolar protein homolog (yeast) [Mus musculus]
          Length = 793

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 134/327 (40%), Gaps = 32/327 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++   +L   +    ++   +A   P  I L            A  L      
Sbjct: 260 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQLLINRGVN 319

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 320 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 379

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 380 PGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 439

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI + A  Q++LLL  I  V    K GG +V+
Sbjct: 440 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVY 499

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 500 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQARRFHPTLRSTR 552

Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444
           +    +  MDGFF    ++    + QP
Sbjct: 553 RFYPHTHNMDGFFIAKFKKFSNSIPQP 579


>gi|319791338|ref|YP_004152978.1| sun protein [Variovorax paradoxus EPS]
 gi|315593801|gb|ADU34867.1| sun protein [Variovorax paradoxus EPS]
          Length = 456

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 114/428 (26%), Positives = 172/428 (40%), Gaps = 39/428 (9%)

Query: 37  AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96
           AF  +    +  V+A+    LR+L R +A+   +   + P    +L              
Sbjct: 43  AFEAVEPALRPGVQALGFQVLRWLGRAEALRRHLAKRTPPPLPDALLCTALGLAWDPERA 102

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWF 152
               + +VD AVE AKR+   R  A  +N+ LRR  RE+ EL+             P W+
Sbjct: 103 PYEPFTLVDQAVEAAKRNPATRAQASFINACLRRFLRERDELVAITDQEPVAQWNHPRWW 162

Query: 153 KERLENFYGKERVLAIS-DACISPLYIDLTVKFDIE-----TWAHKLNAVMLPTGGIRLK 206
            E+L+  + ++    ++ D   +P+ + +                   A           
Sbjct: 163 IEKLKRDHPRDWQRILNADNAQAPMTLRVNALKSTAAAYLSELEAAGLAATRVGASGLQL 222

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--------LNNLSVLDLCAAPGGKTAQ 258
                +  LPGFA+G   VQDA+A +   L           +  L VLD CAAPGGKTA 
Sbjct: 223 GRARPVQQLPGFADGACSVQDAAAQMAAPLLLEGLLPAKPGVAPLRVLDACAAPGGKTAH 282

Query: 259 ----LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLV 312
                    A+V AL+V   R  ++   L RL L A           D+     FDA+L+
Sbjct: 283 LLELAGPGAAEVIALEVDPIRSRRIDETLARLGLQAKVVVADAARPADWWDGTPFDAILL 342

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPC+++G +RRHPDV W R   D  + A  Q  LL      V+PGG +++  CS+ +++
Sbjct: 343 DAPCTASGIVRRHPDVRWLRRESDTAQLAGQQAALLAALWPLVRPGGRLLYCTCSVFREE 402

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
             + +   L        L P                  G +R  PD        S   DG
Sbjct: 403 GSQQIDAFLA-HNTDARLQPSPGHLLPQSG--------GNVRGVPD------NPSGDHDG 447

Query: 433 FFAVALRR 440
           FF   L +
Sbjct: 448 FFYALLEK 455


>gi|17547172|ref|NP_520574.1| hypothetical protein RSc2453 [Ralstonia solanacearum GMI1000]
 gi|17429474|emb|CAD16160.1| probable cog0144, trna and rrna cytosine-c5-methylase protein
           [Ralstonia solanacearum GMI1000]
          Length = 417

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 162/446 (36%), Gaps = 55/446 (12%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            +L+ ++        ++   + +     L  R++ ++       LR              
Sbjct: 11  KVLARLLHFAAPADMIVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 64

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S                             V+   ++ A R+             L R +
Sbjct: 65  SG--------------------SGPARRRLVLLGLLQTAGREAIAPFLTPQEAEWLDRWA 104

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189
                 L      + +P+W  + L   +G+     ++ A ++P  +DL V     + +  
Sbjct: 105 IIDRTALAPR-VRANLPDWLFDALVAQHGQAFTETLAQAWLAPAPLDLRVNTLKGERDAV 163

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +      L  +   +   P       F  G   VQD  + +  QL     + 
Sbjct: 164 LATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRSE 223

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D CA  GGKT  +   + S  ++ A D+S++RL  L   L R  L       +D+  
Sbjct: 224 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDISEKRLANLGPRLARSGLSNVHPARIDSEH 283

Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS  GT+RR+PD+ W +    + + +  Q  +L      +K
Sbjct: 284 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILASAARLLK 343

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CS+  +++++VV++ L      V +    +   + I + M      ++ + 
Sbjct: 344 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEALAAQKIPLEMGP----YLELY 399

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P +           DGFFA  L R  
Sbjct: 400 PHV--------HQTDGFFAAVLERRA 417


>gi|39935271|ref|NP_947547.1| SUN-family protein, putative RNA methyltransferase
           [Rhodopseudomonas palustris CGA009]
 gi|39649123|emb|CAE27643.1| SUN-family protein, putative RNA methyltransferase
           [Rhodopseudomonas palustris CGA009]
          Length = 433

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/464 (21%), Positives = 162/464 (34%), Gaps = 57/464 (12%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  L++ +  +RI     L        +      D+  +  +V   LR 
Sbjct: 1   MTP--AARLSAAIDLIAAIDAQRIPAAKALKEWGTAHRYAG--SGDRSAIAGVVWDVLRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 +++             +  +L++                  A   A     +R 
Sbjct: 57  RASCAYLMEADTPR------ARVLGMLKL-------------ERGMTAEAIAALCDGSRF 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             + ++         +             PEW    L      E  +A + A  S   +D
Sbjct: 98  APEPLSDAEHAALSTRTLDGAPPHVAGDYPEWLDGAL-AEMFGEARVAEAAAMASRAPLD 156

Query: 180 LTVKFDIETWAHKL------NAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQD 227
           L V     +   +L       A + P     L+    +      + + P F +G   VQD
Sbjct: 157 LRVNTLKASRDKELASLAHLGAKLAPWSPWGLRIELPADARNPGVQAEPDFIKGAVEVQD 216

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284
             + +   L        V+DLCA  GGKT   A ++    ++ A D  KR+L  +   L 
Sbjct: 217 EGSQLAALLSAARPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDGDKRQLAPIHERLS 276

Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  ++  ++             K   D VLVDAPC+ TGT RR+PD  W      +    
Sbjct: 277 RAGVHNAEVRAPKGDADPLADIKGSADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396
             Q ++L +    VKPGG + +  CS+   ++   VQ    + P    + P   A     
Sbjct: 337 KDQAEVLARAARLVKPGGRIAYITCSVLAPENTGQVQAFTAAHPEFAVVPPAEVAAALWD 396

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    A  +SPEG +         +    +G DGFF   L+R
Sbjct: 397 KAELFLAAAWISPEGLL---------MTPRRTGTDGFFVSVLKR 431


>gi|121596181|ref|YP_988077.1| sun protein [Acidovorax sp. JS42]
 gi|120608261|gb|ABM44001.1| sun protein [Acidovorax sp. JS42]
          Length = 457

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/458 (24%), Positives = 178/458 (38%), Gaps = 54/458 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            ++   +        S T  L+               +  V+A++   LR L R  A+  
Sbjct: 25  ALALQAVRA----GQSGTVALETTAAAL---------RPGVQALLFQVLRHLGRAQALRR 71

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +   + P +  +L                A + +V+ AVE AKR    R  A  VN+ L
Sbjct: 72  QLAPRNPPPRVDALLCTALALAWDPQAAPYAPFTLVNQAVEAAKRHPATRAQASFVNACL 131

Query: 129 RRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK 183
           RR  RE+             +   P W+ +RL   +  +    +          + ++  
Sbjct: 132 RRFLRERDTLVAATQGDEVAVWNHPAWWIQRLRRDHPDQWQQILQANNAPAPMVLRISKS 191

Query: 184 FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPV---- 234
                   +    +         E      P  +  LPGFAEGV  VQDA+A +      
Sbjct: 192 KSTPALYQQALEAINIEAMAVGPEGLALARPVPVQQLPGFAEGVVSVQDAAAQMAAPLLL 251

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSG------AKVTALDVSKRRLEKLRCNLDRLHL 288
                   L +LD CAAPGGKTA L+          +VTAL+V   R E++  NL RL L
Sbjct: 252 NGLDAAQPLRLLDACAAPGGKTAHLLEWAAALRAPWRVTALEVDAARAERIHDNLHRLGL 311

Query: 289 YAEDIIE-----MDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            A+ ++       D +      +LFDA+L+DAPC+++G +RRHPDV W R   D+ + A 
Sbjct: 312 SAQVLVADAAVPADWWQQASGGELFDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAA 371

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL      ++PGG +++  CS+ + + +  +   L  +     L      +    D
Sbjct: 372 QQSRLLAALWPLLRPGGRLLYCTCSVFRAEGDGQIAAFLAHNTDARLLPSPGHLFPGRPD 431

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               L   G                   DGFF   L +
Sbjct: 432 KRDGLRDNG---------------PGEHDGFFYALLHK 454


>gi|325272515|ref|ZP_08138891.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51]
 gi|324102349|gb|EGB99819.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51]
          Length = 358

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 104/373 (27%), Positives = 163/373 (43%), Gaps = 37/373 (9%)

Query: 88  VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIA 143
           V + Q+ Y  +  +A +   V  A + K+      L+N++LRR  RE       + +   
Sbjct: 1   VGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEALLAGMERDPV 59

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVMLPT 200
             +  P W ++ L+ F+  E+  AI  A  +   + L V       + +   L    +  
Sbjct: 60  VRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYLGLLADAGVAA 118

Query: 201 GGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                     +      +  LPGFAEG   VQD +A +   L        VLD C APGG
Sbjct: 119 SACPYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAAGQRVLDACCAPGG 178

Query: 255 KTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDA 309
           KT  L+ +      +TA+D+  +RL ++R NLDRL L A        D   +   K F  
Sbjct: 179 KTCHLLEAEPGLAHLTAIDLEGKRLNRVRENLDRLQLDAELIACDARDTASWWDGKPFQR 238

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS+TG IRRHPD+  TR  DDI   A  Q +LL      ++ GG+++++ CS  
Sbjct: 239 ILLDAPCSATGVIRRHPDIKLTRQADDIPALAALQGELLDALWPTLEVGGMLLYATCSSL 298

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++ +V++  L  +    EL     A  +       L+ EG                 G
Sbjct: 299 PTENTQVIEAFLARTAGARELDLATEAGLRQPHGRQLLAQEG-----------------G 341

Query: 430 MDGFFAVALRRLI 442
            DGF+   L ++ 
Sbjct: 342 HDGFYYAKLIKIA 354


>gi|149372985|ref|ZP_01891941.1| putative sun protein [unidentified eubacterium SCB49]
 gi|149354345|gb|EDM42912.1| putative sun protein [unidentified eubacterium SCB49]
          Length = 403

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/456 (16%), Positives = 154/456 (33%), Gaps = 69/456 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L  +  +      +L              RD+  +       +R+ 
Sbjct: 1   MRLHRNLVFATIDSLVLIFNEGKQADKVLKNTLKRDKRWG--ARDRGFIAETTYDIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + D  +     R       L R+                   V    R  +   +
Sbjct: 59  RLYAEIAD--VNEPFDRG-----NLFRM-----------------FTVWATLRGIKIPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            +  ++  RR+     E  +       IP+W  E   N  GK+    +  +      + L
Sbjct: 95  PQFEDTPTRRIKGRFDEFSKIRKIRESIPDWLDEVGVNELGKKWDKEL-ASLNQLAPVVL 153

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKEL---------PESIVSLPGFAEGVWWVQDASAS 231
            V           N +          +            ++ +   F  G + VQDA++ 
Sbjct: 154 RVNTLKAKVIDVKNQLSDLDIETISVKGVPNALVLKERANVFTTDAFKNGWFEVQDANSQ 213

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
               +        ++D CA  GGK+     ++ +  ++ ++D+ + +L++L+    R   
Sbjct: 214 KVALMLDPKPGQRIVDACAGAGGKSLHISEMMENKGQLISMDIYESKLKELKRRAKRNGA 273

Query: 289 YAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  +   +D+     K     D VL+DAPCS  G ++R+PD  W    D + +    Q++
Sbjct: 274 HNIETRVIDSTKVIKKLHSSADKVLIDAPCSGLGVLKRNPDTKWKMQPDFLDRIRTLQKE 333

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAM 405
           LL      VK  G ++++ CS+   ++E+ V+  L+       EL   N           
Sbjct: 334 LLRDYSKMVKEDGELLYATCSILPSENEQQVKAFLKTEEGASFELKKENK---------- 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                            +   ++G DGF+   +++ 
Sbjct: 384 -----------------VSPSATGFDGFYMALMKKK 402


>gi|325849117|ref|ZP_08170609.1| putative ribosomal RNA small subunit methyltransferase B
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480362|gb|EGC83425.1| putative ribosomal RNA small subunit methyltransferase B
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 426

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 171/453 (37%), Gaps = 51/453 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +    L  +  K    T +++    + +       D   +   +   L     ++ ++ 
Sbjct: 5   KLILDGLYRICYKNEKSTDIINNIAREVS-------DISYITKNIYGVLENKLYLEYIIG 57

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE------NRHFAK 122
            +    + +    +  +L + +  I +LD  +YA+V+  V   K+         N     
Sbjct: 58  KLSKIKIKKLDKKVLLILEIGIYNIHFLDRKNYAIVNELVNLTKKVSYKSKSFVNAILRS 117

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            +         +     Q  +    IP W    L   YG +      ++      + + V
Sbjct: 118 YIRDEENLSKIKAKNKEQFQSIKYSIPLWIINNLNESYGYDYTEKFLNSLNKERKLSIRV 177

Query: 183 KFDI------ETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
             +       +T   +          +    + + P S+     F EG++ +Q  ++   
Sbjct: 178 NKNKIEKNKLKTLLEEKGYEVEESKISSRSLIVKNPRSLADTKEFKEGLFTIQSEASIKV 237

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            ++     N  +LDLCAAPG KT+ L     + +++ A D+S  +L K+  N+ RL L  
Sbjct: 238 CEVLNPEKNSQILDLCAAPGTKTSFLAELCENSSRIVANDISFNKLSKINENIKRLGLKN 297

Query: 291 EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +I   DA     +    FD VL D PCS  G + R P++ + R  +D++  +  Q+ +L
Sbjct: 298 IEITNFDASIVKDEYKEKFDYVLCDLPCSGLGVMDRKPEIRYNRTMEDVINLSKLQKNIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +   ++K GGI+VFS C++   ++++                       K     + ++
Sbjct: 358 DRAFLYLKKGGIMVFSTCTIGNIENKDN----------------FTYLSKKKSLKNIKIN 401

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            E ++        + +      DGFF     ++
Sbjct: 402 GEEYL--------EYNTFEDETDGFFLTKFEKI 426


>gi|167561034|ref|ZP_02353950.1| sun protein [Burkholderia oklahomensis EO147]
          Length = 470

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 97/414 (23%), Positives = 166/414 (40%), Gaps = 34/414 (8%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD----VADY 101
           +  ++ I    +R     D ++   +  +       +  LL  + A ++  D     A +
Sbjct: 71  RGAIQDIAYRAVRRRGTADWLIAQFVAKAP---HAHVHALLVCAFALLVDDDEHAAYAPF 127

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLE 157
            VVD AV      +E      LVN++LRR  RE+                   W+ + +E
Sbjct: 128 TVVDQAVTAVGARRECSFAKGLVNAVLRRFLRERAAWLKRLQSDRRARWNYETWWIDAVE 187

Query: 158 NFYGKERVLAISDACISPL-YIDLTVKFDIETW------AHKLNAVMLPTGGIRLKELPE 210
             +       ++         + +  +            A +++A  +    IRL   P 
Sbjct: 188 RAWPDAWQRMLAAGDAPGPLTLRVNARRMTADAYLDVLRAEQIDAEKIGRHAIRLA-SPL 246

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTAL 269
            +  +PGF +G+  VQDA A +  +  G  + + VLD CAAPGGKT  ++  + A+V AL
Sbjct: 247 PVERIPGFVDGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVAL 306

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +    R  ++  NL RL L A+       D   +   + FD +L D PCS++G +RRHPD
Sbjct: 307 ESDPARAPRIGENLARLSLAADVRIGDAGDPAQWHDGRPFDRILADVPCSASGIVRRHPD 366

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W R   DI      QR++L      VK GG ++++ CS+  ++ E   +    +    
Sbjct: 367 IRWLRRAADIPALVAEQRRILAALWPLVKLGGELLYATCSIFPEEGELQARWFGGAYQDA 426

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS-GMDGFFAVALRR 440
           V L        +                 P +    +       DGFF    ++
Sbjct: 427 VRLDAPGQLLPQGASGGA-----------PAVGGSSEPGRHVDHDGFFYARFQK 469


>gi|212695669|ref|ZP_03303797.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677342|gb|EEB36949.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 426

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 172/453 (37%), Gaps = 51/453 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +    L  +  K    T +++    + +       D   +   +   L     ++ ++ 
Sbjct: 5   KLILDGLYRICYKNEKSTDIINDIAREVS-------DISYITKNIYGVLENKLYLEYIIG 57

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE------NRHFAK 122
            +    + +    +  +L + +  I +LD  +YA+V+  V   K+         N     
Sbjct: 58  KLSKIKIKKLDKKVLLILEIGIYNIHFLDRKNYAIVNELVNLTKKVSYKSKSFVNAVLRS 117

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            +         +     Q  +    IP W  + L   YG +      ++      + + V
Sbjct: 118 YIRDEENLSKIKAKNKDQFQSIKYSIPLWIIKYLNESYGYDYTEKFLNSLNKKRKLSIRV 177

Query: 183 KFDI---ETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
             +        + L       A    +    + + P S+     F +G++ +Q  ++   
Sbjct: 178 NENKIYKNKLKNLLEDKGYQLAESKISSRSLIVKNPSSLADTEEFKKGLFTIQSEASIKV 237

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            ++     N  +LDLCAAPG KT+ L     + +++ A D+S  +L K+  N+ RL L  
Sbjct: 238 CEVLSPEKNSQILDLCAAPGTKTSFLAELCENSSRIVANDISFNKLSKINENIKRLGLKN 297

Query: 291 EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +I   DA     +    FD +L D PCS  G + R P++ + R  +D++  +  Q+ +L
Sbjct: 298 IEITNFDASIVKDEYKEKFDYILCDLPCSGLGVMDRKPEIRYNRTMEDVINLSKLQKNIL 357

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +   ++K GGI+VFS C++   ++++                       K     + ++
Sbjct: 358 DRAFLYLKKGGIMVFSTCTIGNIENKDN----------------FTYLSKKKSLKNIKIN 401

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            E ++        + +      DGFF     ++
Sbjct: 402 GEEYL--------EYNTFEDETDGFFLTKFEKI 426


>gi|218531110|ref|YP_002421926.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4]
 gi|218523413|gb|ACK83998.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4]
          Length = 449

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 152/458 (33%), Gaps = 57/458 (12%)

Query: 7   ARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           ARL  +  +L  +  +R      L        +      D+  + ++V   LR       
Sbjct: 25  ARLSAAIEILDDIAERRRPAADALKDWGLAHRYAG--SGDRAAIASLVYDGLRRRASAAW 82

Query: 66  VLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           V+              +  +LR+   +A+                  A      R     
Sbjct: 83  VMGAQTGR------AIVIGMLRLQRGLAE---------------PSIASLFDGARFAPPP 121

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           +    R+   E              P +    L      + +L    A      +D+ V 
Sbjct: 122 LTEDERKRLAEGSLADAPPEVAGDAPAFVLPSLT-ALLGDALLPELRALGRRAPLDIRVN 180

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDASAS 231
              ++      A+   +                      ++   P F EG + +QD  + 
Sbjct: 181 TLKQSREEAFAALADLSPETTPLSALGLRIPLGEDGRGPALHVDPLFLEGGFEIQDEGSQ 240

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           I   L G     +V+DLCA  GGK    A +  + A + A D   RRL  +   L R   
Sbjct: 241 IASLLAGAKPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGA 300

Query: 289 YAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             E                     D VLVDAPC+ TGT RR+PD  W      +      
Sbjct: 301 QVEVRTPRTGKARADVLADLDGTVDRVLVDAPCTGTGTWRRNPDAKWRLRPGSLAGRLAE 360

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L +    ++PGG +V+  CSL  ++++  V+ +L+     +  V  + A    +D 
Sbjct: 361 QAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVEGLLQR-SGAIRPVATDLAPVPGLDE 419

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  +  G          ++    +G DGF+   L R 
Sbjct: 420 KVRKTARG---------IQMSPALTGTDGFYVATLTRK 448


>gi|315121833|ref|YP_004062322.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495235|gb|ADR51834.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 429

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 160/450 (35%), Gaps = 48/450 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  ++  +   T  L        F      D++ +  IV   LR       ++D
Sbjct: 8   AAAIEILKDIIFYKKPATNALKDWGASHRFAG--SSDRVSISNIVYDVLRKYLSNAYIMD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                      Y +  ++      I   ++          + +   +E+R         +
Sbjct: 66  D------DNPDYLVYAVI------IKEWNI-------SLEDISTILREDRFAPLFPKESI 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
            +    +      +     IP+W  +     Y K+  L  + +  +   +DL        
Sbjct: 107 IKSLHSRQLENAPLHIQGNIPQWL-QSSIQSYFKDNWLEETKSLSTRPPLDLRTNTLKVN 165

Query: 189 WAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQ 235
                  +                           ++ +   F  G + VQD  + I   
Sbjct: 166 RQKLFKNLQHHGVRYSSISRFGLRIAATKAQSRLPNVTNEISFQRGWFEVQDEGSQIVSD 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L  T  +  +LD CA  GGKT   + L+ +  ++ A D +K R+  +   + R  ++   
Sbjct: 226 LTATKQSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDKNKSRIAPIVARIKRAGIHNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +          ++ F  VLVDAPCS TGT RR PD+ W     ++++    Q+K++ +  
Sbjct: 286 LHSNLESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSPKNLMERIEEQKKIMQEAA 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPE 410
            FV+ GG +V+  CS+  +++ + +   L + P      +V   +  +   +        
Sbjct: 346 KFVRLGGYLVYITCSILPEENIQQINNFLDNHPHFRIDSIVDNWNELYDLKNPPSLFIEN 405

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G   +TP          +  DGFF   L+R
Sbjct: 406 GCCILTP--------FLTNTDGFFFCRLKR 427


>gi|33591772|ref|NP_879416.1| hypothetical protein BP0569 [Bordetella pertussis Tohama I]
 gi|33571415|emb|CAE44897.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332381189|gb|AEE66036.1| hypothetical protein BPTD_0578 [Bordetella pertussis CS]
          Length = 444

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 178/453 (39%), Gaps = 61/453 (13%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
             +RK  SLT  L                +  V+AI    +R L   DAV + ++  S  
Sbjct: 26  QAVRKGRSLTDALAET---------PPALRPAVQAISFHAMRQLGWADAVAETLVRRSP- 75

Query: 77  RKKYSLQQLLRVSVAQILYLDV----------ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
                   LLRV+++ +               A + VVD AV  A   ++   +  L+N+
Sbjct: 76  --GPLFDALLRVALSLLRPAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNA 133

Query: 127 ILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            LRR  RE+  L      R A     P W+ E LE  Y  ++   I      P  + L V
Sbjct: 134 SLRRFLREREALQDSVAERPAARWNHPRWWVELLERAYP-DQWRGILAGANVPAPLTLRV 192

Query: 183 KFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T      A+               +   P  +  LPG+  G W VQDA A +   
Sbjct: 193 NRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYGAGWWSVQDAGAQLAAP 252

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    + + VLD CAAPGGKTA L+  +   + ALD   +RLE++  NL+RL L    + 
Sbjct: 253 LLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADVQRLERVDQNLERLGLRTPRVR 312

Query: 295 EMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              A       +   + FDAVL D PC+++G +RRHPD+ W R   D+ ++A  Q ++  
Sbjct: 313 LAAADASDLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAKDVPRTAALQARIAD 372

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                V PGG +++  CS+   +  E  +   R       L                   
Sbjct: 373 ALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPLDAPG--------------- 417

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               ++ P  ++         DGFF     +  
Sbjct: 418 ----QLLPVAIDATPQAQH--DGFFYALFAKRT 444


>gi|150024790|ref|YP_001295616.1| ribosomal RNA small subunit methyltransferase B [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771331|emb|CAL42800.1| Ribosomal RNA small subunit methyltransferase B [Flavobacterium
           psychrophilum JIP02/86]
          Length = 404

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 158/456 (34%), Gaps = 66/456 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L+ +  +      ++               D+  V   +   +R+ 
Sbjct: 1   MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWG--SSDRKFVAETIYEIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + +  +     R         R+                        R      +
Sbjct: 59  RLYSEIAE--VKEPFDRDNIW-----RMFA-----------------SWAVMRGYTIPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            +L  +  R++     EL +  A    IP+W         G++       A   P  + L
Sbjct: 95  RQLEGTPERKIKGRFDELSKTRAIKESIPDWIDALGVKELGEKIWATEIAAQNQPAKVIL 154

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231
                    E     L  + + T  ++      + +   ++     F +G + VQDA++ 
Sbjct: 155 RTNTLKTTREKLRAILMDLNIDTDTLKDQPDALVLKERANVFLTDAFKQGFFEVQDANSQ 214

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +          + V+D CA  GGKT  L   + +  ++ A+D+ + +L++L+    R   
Sbjct: 215 LVAAFLDVKPGMRVVDTCAGAGGKTLHLASLMENKGQLIAMDLYESKLKQLKLRAKRNGA 274

Query: 289 YAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  +   +D+     K  +  D VL+DAPCS  G ++R+PD  W    + I      Q +
Sbjct: 275 FNIEYKIIDSTKVIKKLAEKADRVLIDAPCSGLGVLKRNPDAKWKLQPEFIENIKKIQAE 334

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      VKPGG +V++ CS+   +++E ++K L                         
Sbjct: 335 VLESYSRIVKPGGKLVYATCSILPSENQEQIEKFL------------------------- 369

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            + E     T     KI    SG DGF+   L R  
Sbjct: 370 -TTETGKSFTFIEDRKILASESGFDGFYMALLERKA 404


>gi|167617463|ref|ZP_02386094.1| sun protein [Burkholderia thailandensis Bt4]
 gi|257140661|ref|ZP_05588923.1| sun protein [Burkholderia thailandensis E264]
          Length = 470

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 103/448 (22%), Positives = 175/448 (39%), Gaps = 34/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     A    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVTRGAALPAALAAVHATLPANARAAS--RGAIQDIAYRAMRRRGTADWLIAQL 95

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLD----VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  LL  + A ++  D     A + VVD AV      +E      LVN+
Sbjct: 96  VAKAPP---AHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNA 152

Query: 127 ILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LRR  RE+                   W+ + +E  +       ++         + + 
Sbjct: 153 VLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDAPGPLTLRVN 212

Query: 182 VKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            +            A +++A  +    IRL      +  +PGFA+G+  VQDA A +  +
Sbjct: 213 ARRMTADAYLDVLRAERIDAEKVGRHAIRLASAL-PVERIPGFADGIVSVQDAGAQLAAE 271

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI- 293
             G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+   
Sbjct: 272 WLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLAADVRV 331

Query: 294 -IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L    
Sbjct: 332 GDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALW 391

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             VKPGG ++++ CS+  ++ E   +    +    V L        +        +    
Sbjct: 392 PLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAA---- 447

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       G     DGFF    ++
Sbjct: 448 ------GGSDEPGRHVDHDGFFYARFQK 469


>gi|254562098|ref|YP_003069193.1| SUN-family protein, RNA methyltransferase [Methylobacterium
           extorquens DM4]
 gi|254269376|emb|CAX25342.1| putative SUN-family protein, RNA methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 449

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 151/458 (32%), Gaps = 57/458 (12%)

Query: 7   ARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           ARL  +  +L  +  +R      L        +      D+  + ++V   LR       
Sbjct: 25  ARLSAAIEILDDIADRRRPAADALKDWGLAHRYAG--SGDRAAIASLVYDGLRRRASAAW 82

Query: 66  VLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           V+              +  +LR+   +A+                  A      R     
Sbjct: 83  VMGAETGR------AIVIGMLRLQRGLAE---------------PSIASLFDGARFAPPP 121

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           +    R+   E              P +    L      + +L    A      +D+ V 
Sbjct: 122 LTEDERKRLAEGSLADAPPDIAGDAPAFVLPSLT-ALLGDALLPELRALGRRAPLDIRVN 180

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDASAS 231
              ++      A+   +                      ++   P F EG + +QD  + 
Sbjct: 181 TLKQSREEAFAALADLSPETTPLSALGLRIPLGEDGRGPALHVDPLFLEGGFEIQDEGSQ 240

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           I   L G     +V+DLCA  GGK    A +  + A + A D   RRL  +   L R   
Sbjct: 241 IASLLAGAKPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGA 300

Query: 289 YAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             E                     D VLVDAPC+ TGT RR+PD  W      +      
Sbjct: 301 QVEVRTPRTGKARADVLADLDGTVDRVLVDAPCTGTGTWRRNPDAKWRLRPGSLAGRLAE 360

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L +    ++PGG +V+  CSL  ++++  V  +L+     +  V  + A    +D 
Sbjct: 361 QAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVDGLLQR-SGAIRPVATDLAPVPGLDE 419

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  +  G          ++    +G DGF+   L R 
Sbjct: 420 KVRKTARG---------IQMSPALTGTDGFYVATLTRK 448


>gi|313207277|ref|YP_004046454.1| fmu (sun) domain protein [Riemerella anatipestifer DSM 15868]
 gi|312446593|gb|ADQ82948.1| Fmu (Sun) domain protein [Riemerella anatipestifer DSM 15868]
          Length = 402

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 164/444 (36%), Gaps = 70/444 (15%)

Query: 12  SHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L      K      +++     +       +D+ +V  I    +R+  R++  +   
Sbjct: 13  HDALRETFFEKNKYADKVIERLLKANKKWG--SQDRAVVSEIFYNIIRWKKRLEYYMGEG 70

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +  +          + R+ +A +L+ +                 K+   F  +  + +  
Sbjct: 71  VKPN---------NIYRLVLAYLLWSETH--------------YKKFEEFDGIKIADI-- 105

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIET 188
           +++ K   +   A    IPEW  E LE   G+     ++        +    T+K   + 
Sbjct: 106 ITKLKKNTVPTKAIEHSIPEWLAETLEKELGEAWEKEMTALNQQAATVLRANTLKTTPKE 165

Query: 189 WAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               LN   +    ++           +++     F +G++ VQDA +            
Sbjct: 166 LVADLNDEGVECHSLKNYPEAIELKEKKNVFLTSAFKDGLFEVQDAGSQKIAHFLEVKEG 225

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMD 297
           + V+D CA  GGKT  +   + +  ++ ALD+ + +L +L+    R   +  +    E +
Sbjct: 226 MRVVDACAGAGGKTLHIAALMKNKGQIIALDIFEWKLAELKRRAKRAGAHNIETRFIEDN 285

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  +  D +L+D PCS  G ++R+PD  W  D D I +    Q+++L      +K 
Sbjct: 286 KVIKRLHEKADRLLLDVPCSGLGVLKRNPDSKWKIDADFIERIKTEQQQILQDYSKILKK 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   +++  V   L ++P    +   +                    + P
Sbjct: 346 GGKMVYATCSILPSENQNQVNTFLATNPNFRLIKDQS--------------------LLP 385

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                    S G DGF+   + RL
Sbjct: 386 ---------SEGYDGFYMALIERL 400


>gi|213961681|ref|ZP_03389947.1| ribosomal RNA small subunit methyltransferase B [Capnocytophaga
           sputigena Capno]
 gi|213955470|gb|EEB66786.1| ribosomal RNA small subunit methyltransferase B [Capnocytophaga
           sputigena Capno]
          Length = 403

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 158/454 (34%), Gaps = 69/454 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N        L+ +  +      +++ +           RD+  +   +   +R+ 
Sbjct: 1   MKLHRNLVDAVIEGLTFIFNEGQYADKVVEKQLKKDKRWG--ARDRAFIAETIYDIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRV-SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                + +         + +++  L R+ +V                     K       
Sbjct: 59  RLYAEIAEVH-------EPFTVHNLRRMFAVW-----------------ATLKSITLPDW 94

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                ++  RR+  +  EL +       +P+W         G+        A  +   + 
Sbjct: 95  GNYFEDTPARRIKGKFDELSKLRKFRESVPDWLDALGVKELGETLWTDELHALNTLAPVV 154

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASA 230
           L V      +E     L    + T  +R            +I     FA+G++ VQDAS+
Sbjct: 155 LRVNTLKTSLERLQQFLRQEKIETYPLRDYPNALQLVERGNIFKTQAFADGLFEVQDASS 214

Query: 231 SIPVQLFG-TLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286
              V           V+D CA  GGKT  +     +  +V A+D+ +++L++L+    R 
Sbjct: 215 QKVVPFMQIDDKVKRVIDTCAGAGGKTLHIANLLQNKGQVIAMDIYEQKLQELKRRARRN 274

Query: 287 HLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
             +  +   +D       +   D VL+DAPCS  G +RR+PD  W    + + +    Q+
Sbjct: 275 GAFNIETKLIDPKQLKRMQGTADRVLIDAPCSGLGVLRRNPDAKWKLRPEFLDEIRATQQ 334

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMA 404
           ++L Q    +K GG +V++ CS+   ++ + V+K L   +     L      +       
Sbjct: 335 EILQQYSKLLKKGGKLVYATCSILPSENHQQVEKFLASEAGKDFRLEAEEVIFA------ 388

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                                  SG DGF+   L
Sbjct: 389 ---------------------HQSGYDGFYMARL 401


>gi|118764303|gb|AAI28185.1| NOP2 protein [Homo sapiens]
          Length = 812

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 454

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 455 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 514

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R+ P +    
Sbjct: 515 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRLHPSLRSTR 567

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 568 RFYPHTHNMDGFFIAKFKK 586


>gi|291392735|ref|XP_002712919.1| PREDICTED: nucleolar protein 1, 120kDa [Oryctolagus cuniculus]
          Length = 809

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 32/327 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 272 ATYYSYGDFLLSKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 331

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 332 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 391

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 392 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHHDGRHFPKVVGGF 451

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 452 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNAASKTGGYLVY 511

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 512 CTCSVMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 564

Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444
           +    +  MDGFF    ++    + QP
Sbjct: 565 RFYPHTHNMDGFFIAKFKKFSNSVPQP 591


>gi|240139687|ref|YP_002964164.1| putative SUN-family protein, RNA methyltransferase
           [Methylobacterium extorquens AM1]
 gi|240009661|gb|ACS40887.1| putative SUN-family protein, RNA methyltransferase
           [Methylobacterium extorquens AM1]
          Length = 449

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 152/458 (33%), Gaps = 57/458 (12%)

Query: 7   ARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           ARL  +  +L  +  +R      L        +      D+  + ++V   LR       
Sbjct: 25  ARLSAAIEILDDIADRRRPAADALKDWGLAHRYAG--SGDRAAIASLVYDGLRRRASAAW 82

Query: 66  VLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           V+              +  +LR+   +A+                  A      R     
Sbjct: 83  VMGAQTGR------AIVIGMLRLQRGLAE---------------PSIASLFDGARFAPPP 121

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           +    R+   E              P +    L      + +L    A      +D+ V 
Sbjct: 122 LTEDERKRLAEGSLADAPPEVAGDAPAFVLPSLT-ALLGDALLPELRALGRRAPLDIRVN 180

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDASAS 231
              ++      A+   +                      ++   P F EG + +QD  + 
Sbjct: 181 TLKQSREEAFAALADLSPETTPLSALGLRIPLGEDGRGPALHVDPLFLEGGFEIQDEGSQ 240

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           I   L G  +  +V+DLCA  GGK    A +  + A + A D   RRL  +   L R   
Sbjct: 241 IASLLAGAKSGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGA 300

Query: 289 YAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             E                     D VLVDAPC+ TGT RR+PD  W      +      
Sbjct: 301 QVEVRTPRTGKARADVLADLDGTVDRVLVDAPCTGTGTWRRNPDAKWRLRPGSLAGRLAE 360

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L +    ++PGG +V+  CSL  ++++  V  +L+     +  V  + A    +D 
Sbjct: 361 QAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVDGLLQR-SGAIRPVATDLAPVPGLDE 419

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  +  G          ++    +G DGF+   L R 
Sbjct: 420 KVRKTARG---------IQMSPALTGTDGFYVATLTRK 448


>gi|332838381|ref|XP_003313492.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Pan
           troglodytes]
          Length = 628

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 271 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 330

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 331 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 390

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 391 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 450

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 451 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 510

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 511 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQERRFHPSLRSTR 563

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 564 RFYPHTHNMDGFFIAKFKK 582


>gi|297198310|ref|ZP_06915707.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
           sviceus ATCC 29083]
 gi|297147058|gb|EDY59597.2| ribosomal RNA small subunit methyltransferase B [Streptomyces
           sviceus ATCC 29083]
          Length = 399

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 151/411 (36%), Gaps = 41/411 (9%)

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
           +R     DA++   +   L      +  +L +   Q+L   +  +A V  +VE A+    
Sbjct: 1   MRRQGTYDAIIAECVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLG 60

Query: 117 NRHFAKLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKE 163
           +   AK VN++LR+++++ ++                 +A +   P W    L +  G  
Sbjct: 61  D-GRAKFVNAVLRKIAQDDLDGWIAKVAPPYDDDPEDHLALVHSHPRWVVSALWDSLGGG 119

Query: 164 RV--LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPG 217
           R     + +A      + L  +    T    L       G      +         ++  
Sbjct: 120 RAGIERLLEADNERPEVTLVARPGRATAEELLREESAVPGRWSPYAVRLAEGGEPGAVDA 179

Query: 218 FAEGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTAL 269
             EG   VQD  +         +     +   LD CA PGGK A L       GA + A 
Sbjct: 180 VREGRAGVQDEGSQLVALALANVPVEGRDEKWLDGCAGPGGKAALLAALAAERGAMLLAS 239

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           +    R   +   L       + I             FD VL+D PC+  G +RR P+  
Sbjct: 240 EKQPHRAGLVAKALAGNPGPYQVIAADGTRPPWQPGSFDRVLMDVPCTGLGALRRRPEAR 299

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W R  +D+      QR+LL   +  V+ GG+V ++ CS    ++  VV+ VL+  P   E
Sbjct: 300 WRRRPEDLEGFGPLQRELLSTAVESVRVGGVVGYATCSPHLAETRAVVEDVLKQWPG-AE 358

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           LV     +    ++         +++ P +         G D  +   +RR
Sbjct: 359 LVDARPLFPGVPELGEGPD----VQLWPHV--------HGTDAMYLAVIRR 397


>gi|114643065|ref|XP_001162353.1| PREDICTED: nucleolar protein 1, 120kDa isoform 3 [Pan troglodytes]
          Length = 812

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 454

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 455 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 514

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 515 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQERRFHPSLRSTR 567

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 568 RFYPHTHNMDGFFIAKFKK 586


>gi|114643069|ref|XP_508956.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 4
           [Pan troglodytes]
          Length = 845

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 308 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 367

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 368 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 427

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 428 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 487

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 488 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 547

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 548 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQERRFHPSLRSTR 600

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 601 RFYPHTHNMDGFFIAKFKK 619


>gi|114643067|ref|XP_001162313.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
           [Pan troglodytes]
 gi|332838378|ref|XP_001162276.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
           [Pan troglodytes]
          Length = 808

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 271 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 330

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 331 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 390

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 391 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 450

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 451 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 510

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 511 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQERRFHPSLRSTR 563

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 564 RFYPHTHNMDGFFIAKFKK 582


>gi|220921294|ref|YP_002496595.1| Fmu (Sun) domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219945900|gb|ACL56292.1| Fmu (Sun) domain protein [Methylobacterium nodulans ORS 2060]
          Length = 427

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 97/459 (21%), Positives = 157/459 (34%), Gaps = 61/459 (13%)

Query: 1   MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL ++  +L+ +  +R  +   L        F      D+  + ++V   LR 
Sbjct: 1   MTPS--ARLAAAIEVLADIAARRRPVADALKDWGLAHRFAG--SGDRAAIASLVYDALRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                 ++              L   LR+   +A                   A      
Sbjct: 57  RASAAWIMGEDTPR------AVLIGTLRLQRGLA---------------GQTIAGLFTGE 95

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           R     +    R                  +PEW    L    G + +L    A      
Sbjct: 96  RFAPAPLTQAERTRLDTATLADAPPHIAGDVPEWVLPSLVRILGDD-LLPELKALARRAP 154

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSL---------PGFAEGVWWV 225
           +D+ V     D E     L  +           L   +            P F EG++ +
Sbjct: 155 LDIRVNTLKADRERVREGLAHLDPAPTPHAPHGLRVPVPDDGRGPALHVEPEFLEGLFEI 214

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCN 282
           QD  + +   L G      V+DLCA  GGKT   A ++ +  ++ A D   RRL  +   
Sbjct: 215 QDEGSQLAALLSGARPGEMVIDLCAGGGGKTLALAAMMENRGRLVATDGDPRRLAPIHER 274

Query: 283 LDRLHLYAEDI-----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           L R    AE                 +   D VLVDAPC+ +GT RR+PD  W      +
Sbjct: 275 LRRAGAAAEVRTPRGSRAAPEVLADLQGQADLVLVDAPCTGSGTWRRNPDAKWRLRPGSL 334

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q  +L +    +KPGG +V+  CSL  ++++E V  +L   P    L       
Sbjct: 335 ATRRSDQAAVLDRAARLLKPGGRLVYVTCSLLPEENDEAVGGILTRQPG---LTIRPPTL 391

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
             +++ A+  +  G +++TP          +G DGF+  
Sbjct: 392 APTLEAALRRTAHG-VQLTP--------ARTGTDGFYVS 421


>gi|119609186|gb|EAW88780.1| nucleolar protein 1, 120kDa [Homo sapiens]
          Length = 606

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 69  AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 128

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 129 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 188

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 189 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 248

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 249 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 308

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 309 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 361

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 362 RFYPHTHNMDGFFIAKFKK 380


>gi|116284068|gb|AAH82985.1| NOP2 protein [Homo sapiens]
          Length = 628

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 271 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 330

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 331 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 390

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 391 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 450

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 451 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 510

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 511 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 563

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 564 RFYPHTHNMDGFFIAKFKK 582


>gi|76150623|ref|NP_006161.2| putative ribosomal RNA methyltransferase NOP2 [Homo sapiens]
 gi|76150625|ref|NP_001028886.1| putative ribosomal RNA methyltransferase NOP2 [Homo sapiens]
 gi|112180609|gb|AAH65257.1| NOP2 nucleolar protein homolog (yeast) [Homo sapiens]
 gi|193786365|dbj|BAG51648.1| unnamed protein product [Homo sapiens]
          Length = 808

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 271 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 330

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 331 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 390

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 391 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 450

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 451 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 510

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 511 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 563

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 564 RFYPHTHNMDGFFIAKFKK 582


>gi|189422|gb|AAA36398.1| proliferating cell nuclear protein P120 [Homo sapiens]
          Length = 869

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 289 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 348

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 349 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 408

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 409 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 468

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 469 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 528

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 529 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 581

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 582 RFYPHTHNMDGFFIAKFKK 600


>gi|146289861|sp|P46087|NOP2_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase NOP2;
           AltName: Full=Nucleolar protein 1; AltName:
           Full=Nucleolar protein 2 homolog; AltName:
           Full=Proliferating-cell nucleolar antigen p120; AltName:
           Full=Proliferation-associated nucleolar protein p120
 gi|12653741|gb|AAH00656.1| NOP2 protein [Homo sapiens]
 gi|118764015|gb|AAI28184.1| NOP2 protein [Homo sapiens]
          Length = 812

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 454

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 455 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 514

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 515 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 567

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 568 RFYPHTHNMDGFFIAKFKK 586


>gi|76779860|gb|AAI06073.1| NOP2 protein [Homo sapiens]
          Length = 845

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 308 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 367

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 368 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 427

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 428 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 487

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 488 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 547

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 548 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 600

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 601 RFYPHTHNMDGFFIAKFKK 619


>gi|287723|emb|CAA39119.1| P120 antigen [Homo sapiens]
          Length = 855

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 454

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 455 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 514

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 515 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 567

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 568 RFYPHTHNMDGFFIAKFKK 586


>gi|146302508|ref|YP_001197099.1| Fmu (Sun) domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146156926|gb|ABQ07780.1| Fmu (Sun) domain protein [Flavobacterium johnsoniae UW101]
          Length = 404

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 164/459 (35%), Gaps = 74/459 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N    +   L+ +  +      ++               D+  V   +   +R+ 
Sbjct: 1   MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWG--SSDRKFVAETIYEIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYS----LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                + +  +     R        +  +LR                             
Sbjct: 59  RLYAEIAE--VKEPYDRDNLWRMFAVWAVLR--------------------------GYP 90

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
              + +L  +  R++     EL +  A    IP+W  E      G++       A   P 
Sbjct: 91  IPDWRQLEGTPERKIKGRFDELSKVRALKESIPDWMDELGVKELGEKIWSKEITAQNQPA 150

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227
            + L         E+  + L  + + T  ++      + +   ++     F +G++ VQD
Sbjct: 151 KVILRTNTLKGTKESLRNTLMDLNIETEYLKDQPEALVLKERANVFLTDAFKQGLFEVQD 210

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
           A++ +          + V+D CA  GGKT  +   + +  ++ A+D+ + +L++L+    
Sbjct: 211 ANSQLVAGFLDVKPGMRVVDTCAGAGGKTLHIASLMENKGQLIAMDLYESKLKQLKLRAK 270

Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           R   +  +   +D      K  +  D VL+DAPCS  G ++R+PD  W    + I     
Sbjct: 271 RNGAFNIEYRIIDTTKVIKKLHEKADRVLIDAPCSGLGVLKRNPDSKWKLQPEFIDNIRK 330

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q ++L      VKPGG +V++ CS+   +++E V+K L++                   
Sbjct: 331 VQSEVLESYSKIVKPGGKLVYATCSVLPSENQEQVEKFLKT------------------- 371

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  E   + T     K+    SG DGF+   + R 
Sbjct: 372 -------EIGQQFTFIEDRKLLASESGFDGFYMALMERK 403


>gi|89902354|ref|YP_524825.1| sun protein [Rhodoferax ferrireducens T118]
 gi|89347091|gb|ABD71294.1| sun protein [Rhodoferax ferrireducens T118]
          Length = 454

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 182/454 (40%), Gaps = 50/454 (11%)

Query: 12  SHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
              ++ V+      +S T  L+    D          +  V+++V   LR L R +A+  
Sbjct: 27  LQAVAAVLLGVRAGMSATAALEGVTADL---------RPGVQSLVFHALRSLGRAEALRQ 77

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVAD--YAVVDLAVEQAKRDKENRHFAKLVNS 126
            +   S P    +   L           D     + +V+  VE AKR    +  A+ +N+
Sbjct: 78  LLAPRSPP--PPADALLCTALALAWREQDAPYEVFTLVNQTVEAAKRSPATQPQARFINA 135

Query: 127 ILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            LRR  RE+  L+Q        +   P W+ +RL+  +  ++  +I  A      + L +
Sbjct: 136 CLRRFLRERDTLVQLTDQNPVALWNHPLWWIKRLQKDWP-DQWQSILAANNRHAPMTLRM 194

Query: 183 KFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                     L                    E  + + +LPGFAEG++ VQDA+A +   
Sbjct: 195 NLRRSAVLPYLQLLKDAGLNASAAGSSGVTLEQAKPVQALPGFAEGLFSVQDAAAQLAAP 254

Query: 236 LFG----TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYA 290
           L         +  +LD CAAPGGKTA L+        ALDV   R E++   L RL L A
Sbjct: 255 LLLSGLAAAGSPQILDACAAPGGKTAHLLEITEGKVTALDVDPARCERIHQTLQRLGLEA 314

Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   +   +   +LFDA+L+DAPC+++G +RRHPDV W R   DI +    Q +LL
Sbjct: 315 RVLVADAANVSAWWDGQLFDAILLDAPCTASGIVRRHPDVRWLRRESDIAQLVATQARLL 374

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG +++  CS+ + +    +Q  L        L+P          +     
Sbjct: 375 KALWQVLKPGGRLLYCTCSVFRAEGGNQIQTFLA-HNTEASLLPSPGHLLPVNRVTGDAV 433

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           P+                    DGF+   L +  
Sbjct: 434 PDN--------------PIGDHDGFYYALLEKRA 453


>gi|113869632|ref|YP_728121.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
 gi|113528408|emb|CAJ94753.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
          Length = 466

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 182/467 (38%), Gaps = 42/467 (8%)

Query: 10  VSSHLLSCV-----MRKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRI 63
           ++  +L        + +  +L   ++          +     +  ++ I   T+R     
Sbjct: 8   LAFQMLGAAAAVRAVSEGTALPQAIEDAAAQLRLDRVQDAATRGALQDIAYRTMRQFGTA 67

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVAD---------------YAVVDLAV 108
            A++  ++      +  SL  +    + +  +                    + VVD AV
Sbjct: 68  RALVTKLVTRPPGAQVDSLLAVALALLLE--HAPGPRDKQDGADAGRPGYSTFTVVDQAV 125

Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKER 164
             A  + +  H   LVN++LRR  RE+     E+ +       +P W+   L   Y  + 
Sbjct: 126 SAAASEPKTAHARGLVNAVLRRFLRERKALLAEVNRDEQARWNLPPWWLRMLREAYPDQW 185

Query: 165 VLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF 218
           +   + A + P          ++V+      A+   A  +             +  LPGF
Sbjct: 186 MALAASANVRPPMTVRVNTARVSVQQYQTDLANAGLAGHVVGPQAVRLVRAVPVTQLPGF 245

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLE 277
           AEGV  VQDA A +   L    + + VLD CAAPGGKT  L+  +  +VTA++   +R  
Sbjct: 246 AEGVVSVQDAGAQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIEVTAVESDPQRTT 305

Query: 278 KLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           ++  NL RL   A  +        D+   + FD +L D PCS++G +RRHPD+ W R   
Sbjct: 306 RIAENLARLGKQARIVVGDASRPADWWDGQPFDRILADVPCSASGIVRRHPDIRWLRRET 365

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           DI K    QR+++ Q    +KPGGI+V+  CS+   + EE  +         + L     
Sbjct: 366 DIAKLVTEQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGAQLADAIRLQA-PG 424

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                     A    G              + S  DGFF    ++  
Sbjct: 425 QLLPGTHATQAAGANGEK-----DATAGTSLPSDHDGFFYARFQKRA 466


>gi|94312493|ref|YP_585703.1| sun protein [Cupriavidus metallidurans CH34]
 gi|93356345|gb|ABF10434.1| tRNA and rRNA cytosine-C5-methylase (sun protein) [Cupriavidus
           metallidurans CH34]
          Length = 457

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 111/461 (24%), Positives = 188/461 (40%), Gaps = 39/461 (8%)

Query: 10  VSSHLLSCV-----MRKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRI 63
           ++  +L        + +  +L   ++          +     +  ++ +   T+R     
Sbjct: 8   LAFQMLGAAAAVRGVHEGTALPQAIEDATNLLRLDRVRDAATRGAIQDLAYRTVRQFGAT 67

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVA--------DYAVVDLAVEQAKRDK 115
            A++  ++         SL  +    + +    D +        D+ VVD AV  A  + 
Sbjct: 68  RALVTQLVTRPPGALVDSLLAVALALLLEGEEGDRSKVGRGGYSDFTVVDQAVSAAASEP 127

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDA 171
           +  H   LVN++LRR  RE+  L+  IA        +P W+ E+L   Y  +R +A++++
Sbjct: 128 KTAHARGLVNAVLRRFLRERKALMDAIAKDEEARWNLPTWWLEQLRAAYP-DRWMALAES 186

Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVML----PTGGIRLKELPESIVSLPGFAEGVWW 224
                 + L V       + +  +L    +                 +  +PGFA G   
Sbjct: 187 VNVRPPMTLRVNTKRLSVDEYLKELANAGMAGTAIGPQAVRLVRAFPVSQVPGFATGDVS 246

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNL 283
           VQDA A +   L    + + VLD CAAPGGKT  L+  +   VTA++    R  ++  NL
Sbjct: 247 VQDAGAQLAAPLCEVADGMRVLDACAAPGGKTGHLLELADIHVTAVESDAERAARIHENL 306

Query: 284 DRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            RL   AE I        D+   + FD +L D PCS++G +RRHPD+ W R   DI K  
Sbjct: 307 ARLDQRAEVIVGDASRPKDWWDGQQFDRILADVPCSASGIVRRHPDIRWLRRESDIAKLV 366

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             QR+++ Q  S +KPGGI+V+  CS+   + EE         P  + L         + 
Sbjct: 367 NEQRRIVSQLWSLLKPGGILVYVTCSIFPTEGEEQALWFGAQLPDAIRLQAPGQLLPGTK 426

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               A +           +     + S  DGF+    ++  
Sbjct: 427 AQETAGTN----------MAGQPSLPSDHDGFYYARFQKRA 457


>gi|83719791|ref|YP_440691.1| sun protein [Burkholderia thailandensis E264]
 gi|83653616|gb|ABC37679.1| sun protein [Burkholderia thailandensis E264]
          Length = 571

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 103/448 (22%), Positives = 175/448 (39%), Gaps = 34/448 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     A    +   +  ++ I    +R     D ++  +
Sbjct: 139 AAQAVDAVTRGAALPAALAAVHATLPANARAAS--RGAIQDIAYRAMRRRGTADWLIAQL 196

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLD----VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +  + P     +  LL  + A ++  D     A + VVD AV      +E      LVN+
Sbjct: 197 VAKAPP---AHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNA 253

Query: 127 ILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181
           +LRR  RE+                   W+ + +E  +       ++         + + 
Sbjct: 254 VLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDAPGPLTLRVN 313

Query: 182 VKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            +            A +++A  +    IRL      +  +PGFA+G+  VQDA A +  +
Sbjct: 314 ARRMTADAYLDVLRAERIDAEKVGRHAIRLASAL-PVERIPGFADGIVSVQDAGAQLAAE 372

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI- 293
             G  + + VLD CAAPGGKT  ++     +V AL+    R  ++  NL RL L A+   
Sbjct: 373 WLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLAADVRV 432

Query: 294 -IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               D   +   + FD VL D PCS++G +RRHPD+ W R   DI      QR++L    
Sbjct: 433 GDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALW 492

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             VKPGG ++++ CS+  ++ E   +    +    V L        +        +    
Sbjct: 493 PLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAA---- 548

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       G     DGFF    ++
Sbjct: 549 ------GGSDEPGRHVDHDGFFYARFQK 570


>gi|315023501|gb|EFT36507.1| ribosomal RNA small subunit methyltransferase B [Riemerella
           anatipestifer RA-YM]
          Length = 402

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 164/444 (36%), Gaps = 70/444 (15%)

Query: 12  SHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L      K      +++     +       +D+ +V  I    +R+  R++  +   
Sbjct: 13  HDALRETFFEKNKYADKVIERLLKANKKWG--SQDRAVVSEIFYNIIRWKKRLEYYMGEG 70

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +  +          + R+ +A +L+ +                 K+   F  +  + +  
Sbjct: 71  VKPN---------NIYRLVLAYLLWSETH--------------YKKFEEFDGIKIADI-- 105

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIET 188
           +++ K   +   A    IPEW  E LE   G+     ++        +    T+K   + 
Sbjct: 106 ITKLKKNTVPTKAIEHSIPEWLAETLEKELGEAWEKEMTALTQQAATVLRANTLKTTPKE 165

Query: 189 WAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               LN   +    ++           +++     F +G++ VQDA +            
Sbjct: 166 LVADLNDEGVECHSLKNYPEAIELKEKKNVFLTSAFKDGLFEVQDAGSQKIAHFLEVKEG 225

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMD 297
           + V+D CA  GGKT  +   + +  ++ ALD+ + +L +L+    R   +  +    E +
Sbjct: 226 MRVVDACAGAGGKTLHIAALMKNKGQIIALDIFEWKLAELKRRAKRAGAHNIETRFIEDN 285

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  +  D +L+D PCS  G ++R+PD  W  D D I +    Q+++L      +K 
Sbjct: 286 KVIKRLHEKADRLLLDVPCSGLGVLKRNPDSKWKIDADFIERIKTEQQQILQDYSKILKK 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   +++  V   L ++P    +   +                    + P
Sbjct: 346 GGKMVYATCSILPSENQNQVNTFLATNPNFRLIKDQS--------------------LLP 385

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                    S G DGF+   + RL
Sbjct: 386 ---------SEGYDGFYMALIERL 400


>gi|281356162|ref|ZP_06242655.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281317531|gb|EFB01552.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 409

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 99/439 (22%), Positives = 173/439 (39%), Gaps = 50/439 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L+ V     +L   LD               +  +  ++ +  R    ++  + 
Sbjct: 13  EEAVAGLAAVEAGEANLDDFLDFRLQYPEL-------RRSISNLLFLCFRRKRFLEGWIG 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +          ++++LL   +AQI +   +A  + V++AV   K   + +  AK VN++
Sbjct: 66  RLAARPPR---PAVRRLLTAVLAQITFQTGIAPESAVNIAVGLVKHSGKLQE-AKFVNAV 121

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
           LRR   +   + +  A   ++P    +R    Y +  +  ++ A ++        +   E
Sbjct: 122 LRRALEQPQPVPE--APELVLPPVLFKRWRKRYSEAELAQLAAALLAQPEFTFRAERGFE 179

Query: 188 TWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                  AV         +      ++      +G  ++QD + S+   L       SVL
Sbjct: 180 PGELAAEAVPAFGEFRFFRACSAARLLESAALRDGRIYIQDPATSLAPSLPDFNGVKSVL 239

Query: 247 DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           DLCAAPGGK+  L        ++ A D S+RR  +   N  R  L    +   D  +   
Sbjct: 240 DLCAAPGGKSLMLGERLAGEGRLVAADRSERRQRQTAENFRRRGLD-YQVTVADPAELTG 298

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +  FD VLVD PCS+TG  RR PDVLW    +++ K    QR++L +      PGG +V+
Sbjct: 299 E--FDVVLVDVPCSNTGVYRRRPDVLWRFRPEELEKITALQRRILGEAARLTAPGGQLVY 356

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS++ +++   V+  L+  P    L                       ++ P      
Sbjct: 357 STCSIEPEENPLQVEAFLKEHPGFERLCE--------------------RQLLPSAE--- 393

Query: 424 DGVSSGMDGFFAVALRRLI 442
                 MDG +A  LRR  
Sbjct: 394 ------MDGAYACLLRRRA 406


>gi|269215462|ref|ZP_06159316.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia
           exigua ATCC 700122]
 gi|269130949|gb|EEZ62024.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia
           exigua ATCC 700122]
          Length = 502

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 153/464 (32%), Gaps = 60/464 (12%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R+ +  +   V  +   ++ +            +  +D      +          +D  +
Sbjct: 68  RVAAYAIGRAVRERGAYVSSVAPTVTA--RIEDIDPKDVAFATRLSKGVAATWGTLDEFI 125

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK------RDKENRHFA 121
           D  + S     +  ++  LRVS  ++++L    + VVD  VE  +       +  N    
Sbjct: 126 DRTMSSP-DDIQADVRDALRVSAYELVFLHKPPHVVVDQGVELVRFVEPKAANLANAVLH 184

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           ++V +       +       +A     P W   RL +  G+        A +    + + 
Sbjct: 185 RMVEAADDFPFGDPETDDAALARSCAFPGWISRRLIDELGRADAAEFMRASMGDAPVFVA 244

Query: 182 VKFDIETWAHKLNA---VMLPTGGIRLKELPESIVSLPGFAEGVW---------WVQDAS 229
           V F     +  + A   V      I        +     F               V D S
Sbjct: 245 VNFVRAKVSEIIQAFKEVGTEVEPIAGVPGCLRVHGAKAFKTPRIKRLFDEGKMLVSDQS 304

Query: 230 ASIPVQLFGTLNNL-SVLDLCAAPGGKT-------AQLIVSGAKVTALDVSKRRLEKLRC 281
           A                L++ +    KT        +   +   + ++D    + E LR 
Sbjct: 305 AQAVALFALPKERPARFLEIGSGRATKTVLMQSAAYRRYGAFMDMVSVDDHAFKAEILRE 364

Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
            ++   +   +    D            FDAV VDAPCS  GT+RRHP++ W     D+ 
Sbjct: 365 RMESYGIEGVEARVADGRMLSKSFDAGSFDAVFVDAPCSGIGTLRRHPEIKWRLTASDVS 424

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAY 397
             A     +L++    V+ GG++ +S C+  K+++E+VV + L+  +     +       
Sbjct: 425 TLAMTGFDMLIEAAGLVRVGGMLTYSTCTAFKEENEQVVDRFLKMKTGESFVVES----- 479

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                    +  V  G D  +AV LRR+
Sbjct: 480 ----------------------TMAVKLVEGGPDAHYAVRLRRV 501


>gi|257091709|ref|YP_003165350.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044233|gb|ACV33421.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 442

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/434 (26%), Positives = 173/434 (39%), Gaps = 55/434 (12%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
             SLT  L      +     + +D          TLR     + +L  +L   L   +  
Sbjct: 47  GQSLTQALRPLSAAAPAARAAAQDVA------YGTLRRYGCGEFILARLLTKPLSHTETE 100

Query: 82  LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
                  ++ ++     A Y VVD AV  A        F  LVN +LR   R++  L   
Sbjct: 101 ALL--LAALFRLHTRPEAAYMVVDQAVAAAGEMTGG-VFKGLVNGLLRSYLRQRESLAAA 157

Query: 142 IAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET-------WA 190
           +AG    +   P W+  RL   Y +     I  A   P  + L V     T         
Sbjct: 158 MAGDDEAVQQHPAWWLARLRRAYPEHWQE-IVAAGNGPPPMTLRVNRRRATSEAYAARLL 216

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
              ++         L   P ++ +LPGFA+G+  +QDA A    QL   +    +LD CA
Sbjct: 217 EAGSSARQVAANALLLAKPVTVDALPGFADGLVSIQDAGAQRAAQLLLPVAGERILDACA 276

Query: 251 APGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---DYCPKKL 306
           APGGK A L   +   + ALD+   R  ++  NL RL L A  +   D     D+     
Sbjct: 277 APGGKAAHLLEAADIDLLALDIDATRTRRIEDNLRRLGLVA-KVGVADCRASGDWWDGLP 335

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FDA+L D PCS++G +RRHPD+ + R   DI + A  Q  LL Q    +KPGG ++++ C
Sbjct: 336 FDAILADVPCSASGVVRRHPDIKYLRRESDIRRFALLQADLLDQLWPLLKPGGRLLYATC 395

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           S+  +++E  +   L   P    LV                      R+ P         
Sbjct: 396 SVFPEENEGQIDAFLVRQPTARRLVEE--------------------RLLP--------- 426

Query: 427 SSGMDGFFAVALRR 440
               DGF+   LR+
Sbjct: 427 REEHDGFYYALLRK 440


>gi|91217896|ref|ZP_01254850.1| putative sun protein [Psychroflexus torquis ATCC 700755]
 gi|91183989|gb|EAS70378.1| putative sun protein [Psychroflexus torquis ATCC 700755]
          Length = 404

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/453 (21%), Positives = 158/453 (34%), Gaps = 67/453 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N        L  +  +       +              RD+  +       +R+ 
Sbjct: 1   MRLHRNLVFAVVDTLHLIFNEDKYADKEISNTLKRDKRWG--ARDRGFIAETTYDIVRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                + D  +     R       L R+                   V    +  E   +
Sbjct: 59  RLYSEIAD--VNPPFSRP-----NLFRL-----------------FTVWATLKGIEIPDW 94

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI-- 178
            +  ++  RR+     EL +       IP+W  E      GK     I         I  
Sbjct: 95  KQFEDTPTRRIKGRFDELSKITKYAESIPDWMDELGRKELGKLWESEIHALNEQAKVILR 154

Query: 179 --DLTVKFDIETWA--HKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASI 232
              L +           +     L  G     EL E   +     F +G + VQDAS+  
Sbjct: 155 TNTLKITPTKLQLILDEEFIPTKLIKGYPEALELYERADVFKTEAFKKGFFEVQDASSQK 214

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                     L V+D CA  GGKT  +   + +  +V A+D+   +L++L+    R   +
Sbjct: 215 VAHALKLEPGLRVIDACAGAGGKTLHIAALMENKGQVIAMDIYGNKLKELKRRAKRAGAH 274

Query: 290 AEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
             +  E+D+     K     D VL+DAPC+  G +RR+PD  W    + + +    Q+ L
Sbjct: 275 NLETREIDSTKVIKKLHDSADRVLIDAPCTGLGVLRRNPDAKWKLTPEFLKEIKEKQQNL 334

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           LL     VKPGG++V++ CS+   +++  +Q  L                          
Sbjct: 335 LLDYSKMVKPGGLLVYATCSILPTENQVQIQDFLN------------------------- 369

Query: 408 SPEG-WIRITPDMLEKIDGVSSGMDGFFAVALR 439
           SPEG + ++  D  EKI    SG DGF+   L+
Sbjct: 370 SPEGEFFQL--DTDEKILAHKSGYDGFYYAVLK 400


>gi|49474994|ref|YP_033035.1| SUN protein (Fmu protein) [Bartonella henselae str. Houston-1]
 gi|49237799|emb|CAF26993.1| SUN protein (FMU protein) [Bartonella henselae str. Houston-1]
          Length = 428

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 45/449 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +   +   L        F   S  D+  +  IV   LR    +   ++
Sbjct: 8   QAAIDVLKEIEIRHRPIGEALKDWGVCHRFAGAS--DRAAIGTIVYDVLRRRYSLQWRME 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                     + S+   L         LD     +  +  E     + +R   +L+    
Sbjct: 66  S------DDIRDSVFGTL---------LDTNKMTIEQIDGEL----EGDRFAPQLLGMRQ 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           R+  + +  +         IP+W +  L   +    V+    A  +   +DL V     T
Sbjct: 107 RQSWQRRQLVDAPDYIRGDIPQWCQAHLRPLFADNWVIEA-AALATRPSLDLRVNSLKAT 165

Query: 189 WAHKLNAVMLPTGGIRLKEL-------------PESIVSLPGFAEGVWWVQDASASIPVQ 235
                  +                           ++   P F +G + +QD  + I   
Sbjct: 166 PEKVFQELAKNKVQSFSWFRQALRIAPIEKFGRHPNVQVKPAFQKGHFEIQDLGSQIVAH 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L      + VLD CA  GGKT   A  + +  ++ A D  K RL  +   L R  +    
Sbjct: 226 LVEAKERMQVLDYCAGAGGKTLALAASMKNQGQIYAYDSDKARLAPIFDRLRRAGVRNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                          D VL+DAPCS TGT RRHPD  W    + + +    QR +L + I
Sbjct: 286 PRAQREELQSLVGRMDRVLLDAPCSGTGTWRRHPDTKWRLTLEQVRQRQREQRAILNETI 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            ++K  G +V+  CSL   ++EE + + L+       +     A WK    + ++ P   
Sbjct: 346 DYLKLNGRLVYITCSLFVDENEEQISRFLQQHCNFYAID--MRALWKQHFSSSSVQP--- 400

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +    +   ++  DGFF   L++ 
Sbjct: 401 --VFSNYGLTLSPATTKTDGFFLSVLQKK 427


>gi|297690947|ref|XP_002822860.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           isoform 1 [Pongo abelii]
 gi|297690949|ref|XP_002822861.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           isoform 2 [Pongo abelii]
          Length = 814

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 277 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 336

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 337 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYILQGASSMLPVMALAPQEHERILDMCCA 396

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 397 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 456

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 457 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 516

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 517 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 569

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 570 RFYPHTHNMDGFFIAKFKK 588


>gi|302382747|ref|YP_003818570.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193375|gb|ADL00947.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 471

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 161/483 (33%), Gaps = 78/483 (16%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           ++  +   +     +L     ++ +     +D+  +   V   LR   R+   +      
Sbjct: 13  IIDRISAGKAPAEAVLKTWGTENRYAG--SKDRRAIADQVYKVLRARGRLVWAMGGREDG 70

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                    + L+  +++ I  L V +   +      A      +  +K       R   
Sbjct: 71  ---------RALVIGALSLIDGLSVEEIEALH-----AGDGYGPKPLSKQ-----ERSRI 111

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK- 192
                       + +PE+  E   N +G       +   +    IDL V     T A   
Sbjct: 112 SMTADEVPGWVAAGLPEFVVEDFRNTFGDRWAEEAAGLMVPRAPIDLRVNGARATVAEVE 171

Query: 193 -------LNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
                  LN    P     L+   E    + +L  F  G   +QD  + I   L G    
Sbjct: 172 AELREAGLNPTRTPWSAWGLRLSAEPPPNVQALEAFKAGRIEIQDEGSQIVCWLAGVEPG 231

Query: 243 LSVLDLCAAPGGKTAQLIVSG--------------------------------------- 263
           ++V+D CA  GGKT  L + G                                       
Sbjct: 232 MTVVDYCAGGGGKTLGLAMQGLANGASRVEAAPAEPERIWTPTGWVDAPKSKPKAATIAR 291

Query: 264 --AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319
              ++ A DV ++RL+ +R  L R  + AE I            +   D V VDAPC+ +
Sbjct: 292 AEGRLIACDVVQKRLDNIRPRLARAGVEAELIHLGPNGGGVEDIVGIADVVFVDAPCTGS 351

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT RR P+  W    +D+ +    Q  +L +    VKPGG +V+  CS+ + ++E  V  
Sbjct: 352 GTWRRRPEDAWRLKPEDVDRMHALQMAILARAAKLVKPGGRLVYVTCSMLRVENEATVDH 411

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                P    +    +    ++  A   +  G  +       ++   ++  DGFF     
Sbjct: 412 FEEDHPSFAPVPVAEALGSAAMTDAARETLAGLAQ---GHRLRMSPATTDTDGFFVALYE 468

Query: 440 RLI 442
           R  
Sbjct: 469 RRA 471


>gi|311256287|ref|XP_003126580.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Sus
           scrofa]
          Length = 821

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  I L            A  L    + 
Sbjct: 274 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 333

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 334 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 393

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 394 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISNYDGRQFPKVVGGF 453

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 454 DRVLLDAPCSGTGIISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVSATSKTGGYLVY 513

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 514 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 566

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 567 RFYPHTHNMDGFFIAKFKK 585


>gi|71066692|ref|YP_265419.1| hypothetical protein Psyc_2138 [Psychrobacter arcticus 273-4]
 gi|71039677|gb|AAZ19985.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 524

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/524 (22%), Positives = 202/524 (38%), Gaps = 111/524 (21%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R+     L  + +   SL  +LD          L   D+    A++  TLR    ++ +
Sbjct: 25  VRVRVIRTLLAI-QNGQSLASVLDPLL-----NSLHDGDKGFAHALLLTTLRQWYALERL 78

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           LD +  +S+  K+  ++  ++V + Q+LYL VAD+A +   VE AK  +   H   L+N+
Sbjct: 79  LDSLADNSIDEKE--VRTTIQVGLTQLLYLQVADHAAIHETVEAAKEIEF-AHATGLINA 135

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
           ILR+V++   +  ++      +P W   +L+  +  E+   +      P  + L V    
Sbjct: 136 ILRKVAKNPSKFRKKCDKKHSLPNWLAYQLKQDWS-EQYDDLMQGLRQPAPMFLRVNTAV 194

Query: 185 -DIETWAHKLNAVMLPTGGIRLK------------------------ELPESIVSLPGFA 219
             +E +   L    +    + L                             ++ +LP FA
Sbjct: 195 TSVEDYQQALVEFEVEADLVELTSGFNLPNSLDAATSKTISTKGFRLHQSTAVNALPQFA 254

Query: 220 EGVWWVQDASASIPVQLFG--------------------TLNNLSVLDLCAAPGGKTAQL 259
           +G   VQD  A +   L                        N + +LD CAAPGGK A  
Sbjct: 255 QGAASVQDMHAQLAAPLIHSALFNKLSVKNDDADVDTDTNNNEIRILDACAAPGGKLAHW 314

Query: 260 IVS-----------------------GAKVTALDVSKRRLEKLRCNLDRLHLY------- 289
           +                            +TA+D    R+E++  NL RL+L        
Sbjct: 315 LEILSSNEQSPLFHVKQDDESIPAVSKVTLTAIDNEAPRIERIYDNLQRLNLSQHDLQQA 374

Query: 290 ------AEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
                      +   +    KK     FDA+L+D+PC++TG IRRHPD+   R  +D+ +
Sbjct: 375 EKNIELNIVCADATTWQGAGKKKSKLVFDAILLDSPCTATGVIRRHPDISILRTEEDVEQ 434

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
           +A  Q  +L      +K GG +++  CS+ KQ++ E +Q  +      V +         
Sbjct: 435 TALLQADILHNLWPQLKVGGYLLYVTCSILKQENVEQMQDFITHYSDAVAIE-------F 487

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           S D    ++     +  P         S   DGF+   L +  +
Sbjct: 488 SEDCNWGIAQAIGRQCLP-------IDSESGDGFYYALLHKTAE 524


>gi|109095238|ref|XP_001105964.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           isoform 3 [Macaca mulatta]
          Length = 807

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 270 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 329

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 330 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 389

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 390 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 449

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 450 DRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 509

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 510 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSAR 562

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 563 RFYPHTHNMDGFFIAKFKK 581


>gi|109095240|ref|XP_001105811.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           isoform 1 [Macaca mulatta]
          Length = 844

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 307 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 366

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 367 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 426

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 427 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 486

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 487 DRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 546

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 547 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSAR 599

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 600 RFYPHTHNMDGFFIAKFKK 618


>gi|109095234|ref|XP_001105884.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           isoform 2 [Macaca mulatta]
 gi|109095236|ref|XP_001106035.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           isoform 4 [Macaca mulatta]
          Length = 811

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 274 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 333

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 334 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 393

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 394 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 453

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 454 DRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 513

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 514 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSAR 566

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 567 RFYPHTHNMDGFFIAKFKK 585


>gi|315223466|ref|ZP_07865323.1| RsmB/NOP family methyltransferase [Capnocytophaga ochracea F0287]
 gi|314946639|gb|EFS98630.1| RsmB/NOP family methyltransferase [Capnocytophaga ochracea F0287]
          Length = 412

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 160/453 (35%), Gaps = 67/453 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N        L+ +  +      +++ +           RD+  +   +   +R+ 
Sbjct: 10  MKLHRNLVDAVIEGLTFIFNEGQYADKVVEKQLKKDKRWG--ARDRAFIAETIYDIVRWK 67

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRV-SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                + +         + +++  L R+ +V                     K       
Sbjct: 68  RLYAEIAEVY-------EPFTVHNLRRMFAVW-----------------ATLKSIALPDW 103

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                ++  RR+  +  EL +       +P+W         G+        A  S   + 
Sbjct: 104 GNYFEDTPARRIKGKFDELSKVRKLRESVPDWLDTLGAQELGETLWTDELHALNSLAPVV 163

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASA 230
           L V      +E     L    + T  +R            +I     FA+G++ VQDAS+
Sbjct: 164 LRVNTLKTSLEHLQQFLRQEGVETYPLRDYPDALQLVERSNIFKTQAFADGLFEVQDASS 223

Query: 231 SIPVQLFG-TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
                          V+D CA  GGKT  L   + +  ++ A+D+ +++L++L+    R 
Sbjct: 224 QKVAPFMQIDDKVKRVIDTCAGAGGKTLHLATLMQNKGQIIAMDIYEQKLQELKRRARRN 283

Query: 287 HLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            ++  +   ++          FD VL+DAPCS  G +RR+PD  W    + + +    Q+
Sbjct: 284 GVFNIETKLIEPKQLKRMHGTFDRVLIDAPCSGLGVLRRNPDAKWKLQPEFLDEIRTTQQ 343

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L Q    +K GG +V++ CS+   ++++ ++K L S       +              
Sbjct: 344 EILQQYSKLLKKGGKLVYATCSILPSENQQQIEKFLASEAGKEYRLEAEEV--------- 394

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                            I    SG DGF+   L
Sbjct: 395 -----------------IFAHQSGYDGFYMARL 410


>gi|163852351|ref|YP_001640394.1| Fmu (Sun) domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163663956|gb|ABY31323.1| Fmu (Sun) domain protein [Methylobacterium extorquens PA1]
          Length = 459

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 151/458 (32%), Gaps = 57/458 (12%)

Query: 7   ARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           ARL  +  +L  +  +R      L        +      D+  + ++V   LR       
Sbjct: 35  ARLSAAIEILDDIADRRRPAADALKDWGLAHRYAG--SGDRAAIASLVYDGLRRRASAAW 92

Query: 66  VLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           V+              +  +LR+   +A+                  A      R     
Sbjct: 93  VMGAETGR------AIVIGMLRLQRGLAE---------------PSIASLFDGARFAPPP 131

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
           +    R+   E              P +    L      + +L    A      +D+ V 
Sbjct: 132 LTEDERKRLAEGSLADAPPEVAGDAPAFVLPSLT-ALLGDALLPELRALGRRAPLDIRVN 190

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDASAS 231
              ++      A+   +                      ++   P F EG + +QD  + 
Sbjct: 191 TLKQSREEAFVALADLSPDTTPLSALGLRIPLGEDGRGPALHVDPLFLEGGFEIQDEGSQ 250

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           I   L G     +V+DLCA  GGK    A +  + A + A D   RRL  +   L R   
Sbjct: 251 IASLLAGAKPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGA 310

Query: 289 YAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             E                     D VLVDAPC+ TGT RR+PD  W      +      
Sbjct: 311 QVEVRTPRTGKARADVLADLDGTVDRVLVDAPCTGTGTWRRNPDAKWRLRPGSLAGRLAE 370

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L +    ++PGG +V+  CSL  ++++  V  +L+     +  V  + A    +D 
Sbjct: 371 QAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVDGLLQR-SGAIRPVATDLAPVPGLDE 429

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  +  G          ++    +G DGF+   + R 
Sbjct: 430 NVRKTARG---------IQMSPALTGTDGFYVATMTRK 458


>gi|301773766|ref|XP_002922311.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           [Ailuropoda melanoleuca]
          Length = 820

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
                  R  S     L + +A      ++   +L + +    ++   +A   P  I L 
Sbjct: 257 GTQREEGRSRSEYLHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLR 316

Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230
                      A  L    +    +                I + P +  G + +Q AS+
Sbjct: 317 TNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASS 376

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +PV       +  +LD+C APGGKT+ +   + +   + A D +  RL+ +  NL RL 
Sbjct: 377 MLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLG 436

Query: 288 LYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +    I   D   +      FD VL+DAPCS TG I + P V   +D  DI++ A  Q++
Sbjct: 437 VTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKE 496

Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
           LLL  I  V    K GG +V+  CS+  +++E VV   L+     V LVP    + +   
Sbjct: 497 LLLSAIDSVNAMSKTGGYLVYCTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ--- 551

Query: 403 MAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440
                +     R  P +    +    +  MDGFF    ++
Sbjct: 552 --EGFTRFRERRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 589


>gi|329850813|ref|ZP_08265658.1| NOL1/NOP2/sun family protein [Asticcacaulis biprosthecum C19]
 gi|328841128|gb|EGF90699.1| NOL1/NOP2/sun family protein [Asticcacaulis biprosthecum C19]
          Length = 441

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/463 (20%), Positives = 166/463 (35%), Gaps = 55/463 (11%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   ++ +L  +   R +   +L     ++ +     +D+  +   V    R 
Sbjct: 1   MTP--AARLQAAADILDQLSGTRATAEAVLKQWGQNNRYAG--SKDRRAIADRVYRCTRA 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             R+   +     S+   +   L  L  +           D A +D              
Sbjct: 57  RSRLLWAMQKTEKSTGQGRALVLASLALI-----------DGAPLDEIETL----FSGAG 101

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +     +   +      +    +   + +PE+   R +  +G +     +D       ID
Sbjct: 102 YGPKPLTDEEKSQISAADGDAPLWVKTGLPEFVVGRFQQQFGDDWAAEATDLMTPRAPID 161

Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIRLKEL--------PESIVSLPGFAEGVWWVQDA 228
           L V       +     L    L                  P ++V L  + +G+  +QD 
Sbjct: 162 LRVNGARTARDEMLKVLGEEGLSPQPTPFSRFGIRLPSEPPPNLVKLSAYQQGLIEIQDE 221

Query: 229 SASIPVQLFGT---LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCN 282
            + +   L G         V+D CA  GGKT   AQ++    ++ A DV ++RL  +   
Sbjct: 222 GSQLAAFLAGAGLLPGASKVVDFCAGGGGKTLALAQMMDGKGEIYACDVVEKRLRAIEPR 281

Query: 283 LDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           L R    A  +   D  D       +  D VLVDAPCS +GT RRHP+     +  ++ +
Sbjct: 282 LQRAGASAHFVHFFDPEDETQLELLRGADLVLVDAPCSGSGTWRRHPEEAHRLNEAEVER 341

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN----- 394
               Q  +L +  S VKPGG +V+  CS+   ++          +P   + +P++     
Sbjct: 342 LHGLQTHILSRAASCVKPGGRLVYVTCSVLDDENAATADVFEAQNP-AFDALPIHSLARM 400

Query: 395 -SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
            S +  +      LS    +R+TP         ++  DGFF  
Sbjct: 401 ASLFVDNTARLTELSAGHRLRLTPH--------TTSTDGFFIA 435


>gi|332249237|ref|XP_003273770.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 3
           [Nomascus leucogenys]
          Length = 629

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 272 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 331

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 332 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 391

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 392 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 451

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 452 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 511

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 512 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 564

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 565 RFYPHTHNMDGFFIAKFKK 583


>gi|332249233|ref|XP_003273768.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
           [Nomascus leucogenys]
 gi|332249235|ref|XP_003273769.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
           [Nomascus leucogenys]
          Length = 809

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 272 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 331

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 332 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 391

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 392 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 451

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 452 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 511

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 512 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 564

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 565 RFYPHTHNMDGFFIAKFKK 583


>gi|171911400|ref|ZP_02926870.1| putative sun protein [Verrucomicrobium spinosum DSM 4136]
          Length = 408

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 154/455 (33%), Gaps = 62/455 (13%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   +        L+ +  + +     ++             RD+          +R+ 
Sbjct: 1   MKLHRHLIEQIIATLAEIFARGVHADKAIERMMKAYPKWG--ARDRRFFAETSYELVRWW 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
                 L  +  S   +              ++L                          
Sbjct: 59  RWY-WYLAGLPDSEYNKV-------------ELLNDGKVWRV----WAAYWMVQHGEAPP 100

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
                       + + +     A    IP+W +ER    +G+E    +  A   P  + L
Sbjct: 101 FAECRGSWNATVKSRYDADVLPAIRLSIPDWLQERGSKEFGREWPE-LMKALNEPADVFL 159

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
                         +L    + +  ++         + +++ +   F +G++ VQDA++ 
Sbjct: 160 RANTLRITPVELQARLEGEGVESHRVKGLPDALRLSVRKNVFTTQAFKDGLFEVQDAASQ 219

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                        V+D CA  GGKT  L   + +   + A+DV + +L+++R    R  +
Sbjct: 220 KIAPFLEVAPGQRVVDACAGAGGKTLHLAALMQNKGSLVAMDVHQWKLDEMRRRARRNGV 279

Query: 289 YAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +IE            D VL+D PCS  G IRR+PD  W    +++ +    Q++
Sbjct: 280 SNVEPRLIEDSKSIKRLADKADRVLLDVPCSGLGVIRRNPDAKWKLSEEELDRLEKLQQE 339

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L+     VKPGG +V++ CSL   +++  VQ  L S     +L                
Sbjct: 340 ILVSHSRMVKPGGKLVYATCSLFPSENDRQVQTFLASHGDEWKL---------------- 383

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              E  + + PD          G DGF+A  L R 
Sbjct: 384 ---EEELSLRPD--------REGYDGFYAARLVRK 407


>gi|319778867|ref|YP_004129780.1| Ribosomal RNA small subunit methyltransferase B [Taylorella
           equigenitalis MCE9]
 gi|317108891|gb|ADU91637.1| Ribosomal RNA small subunit methyltransferase B [Taylorella
           equigenitalis MCE9]
          Length = 425

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 114/444 (25%), Positives = 187/444 (42%), Gaps = 58/444 (13%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
            S   + D+  G S   LL + D   +  V AI    LR   +  ++ + +L  S P   
Sbjct: 13  SSSKLVRDVMGGQSTSDLLPKVDITIRAGVHAISFHALRHYGKALSIANKLLTKSPP--N 70

Query: 80  YSLQQLLRVSVAQI------LYLDVADYA---VVDLAVEQAKRDKENRHFAKLVNSILRR 130
                LL VS++ +      L+ +   Y    V+D +V    +  +   F  L+N+ LR 
Sbjct: 71  SLFLNLLCVSLSLLIVDDSELFDEQPVYKEFVVLDESVNACSKMPKTASFKGLLNACLRN 130

Query: 131 VSREKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
             R K EL++ +        P+W+ E+L+N Y    +  + +A      I+L +      
Sbjct: 131 FLRNKTELIRGLNIYENLSYPQWWYEKLKNSYPNTYLEVL-NADKKYAPINLRINTRKIS 189

Query: 186 IETWAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +   L+   +    I           +I +LPG+ EG++ VQD  A          N
Sbjct: 190 RADYLKLLSTQNIEFEEIGESGIKLSKSVNIATLPGYDEGLFSVQDIGAQNAAFQLPIKN 249

Query: 242 NLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDA 298
              VLD C+APGGK A L       +  +D  K RLE+++ NL+RL L      ++E DA
Sbjct: 250 GDYVLDACSAPGGKAAHLLERFDIDLLCMDADKERLERVKENLNRLDLLGQNVHLLEGDA 309

Query: 299 --FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
              D+   + FDA+L D PC+ +G +RRHPD+ W R   D++K+   QRK+++     +K
Sbjct: 310 SLKDWWDGRKFDAILADVPCTGSGVVRRHPDIKWLRKEVDVIKTVELQRKIIINLWDMLK 369

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +++  CS+ K++ E   Q                             +    I   
Sbjct: 370 FGGYLLYVTCSVFKEEGELQAQYF--------------------------TTKLEGIERL 403

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P +           DGFF    ++
Sbjct: 404 PSLGHIFPPKQ---DGFFYALFKK 424


>gi|73997745|ref|XP_854432.1| PREDICTED: similar to Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) [Canis
           familiaris]
          Length = 985

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
                  R  S     L + +A      ++   +L + +    ++   +A   P  I L 
Sbjct: 425 GTQREEGRSRSEYLHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLR 484

Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230
                      A  L    +    +                I + P +  G + +Q AS+
Sbjct: 485 TNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGYYMLQGASS 544

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +PV       +  +LD+C APGGKT+ +   + +   + A D +  RL+ +  NL RL 
Sbjct: 545 MLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLG 604

Query: 288 LYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +    I   D   +      FD VL+DAPCS TG I + P V   +D  DI++ A  Q++
Sbjct: 605 VTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKE 664

Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
           LLL  I  V    K GG +V+  CS+  +++E VV   L+     V LVP    + +   
Sbjct: 665 LLLSAIDSVNATSKTGGYLVYCTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ--- 719

Query: 403 MAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440
                +     R  P +    +    +  MDGFF    ++
Sbjct: 720 --EGFTRFRERRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 757


>gi|296487127|gb|DAA29240.1| nucleolar protein 1, 120kDa [Bos taurus]
          Length = 820

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  I L            A  L    + 
Sbjct: 276 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 335

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 336 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 395

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 396 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQFPKVVGGF 455

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 456 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 515

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 516 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 568

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 569 RFYPHTHNMDGFFIAKFKK 587


>gi|156121159|ref|NP_001095727.1| nucleolar protein 1, 120kDa [Bos taurus]
 gi|151554602|gb|AAI49979.1| NOP2 protein [Bos taurus]
 gi|154425735|gb|AAI51442.1| NOP2 protein [Bos taurus]
          Length = 820

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  I L            A  L    + 
Sbjct: 276 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 335

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 336 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 395

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 396 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQFPKVVGGF 455

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 456 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 515

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 516 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 568

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 569 RFYPHTHNMDGFFIAKFKK 587


>gi|304321740|ref|YP_003855383.1| sun family protein [Parvularcula bermudensis HTCC2503]
 gi|303300642|gb|ADM10241.1| sun family protein [Parvularcula bermudensis HTCC2503]
          Length = 429

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 154/453 (33%), Gaps = 54/453 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L+    +R+ +   L      + +     +D+  +  +V+  LR+   ++    
Sbjct: 8   AAALDVLAQFEARRVPIKVCLADWARGARYAG--AKDRAFIGGVVHDALRYRRSLE---- 61

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +           L  L              +  +V      A+        +      +
Sbjct: 62  -LDTRPRIGIGRVLMTL----------WGWPEARLV---EAFAETPHGPGALSAEEIDAI 107

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIE 187
              +                PE+    LE           ++   +P+ + +  ++ D+ 
Sbjct: 108 AEGATLAAR-----DVRRDWPEFALPLLERVNDNPTAEIEANRARAPVDLRVNTLRSDLP 162

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVS----------LPGFAEGVWWVQDASASIPVQLF 237
                L         +    L  ++ +           P F +G   +QD  + +     
Sbjct: 163 RTEKALRGEGAVPAPLAALALRCAVPAAERRGPAIEITPAFQKGWVEIQDEGSQLAALAM 222

Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G L    +LD CA  GGK    A  + +  +V A D+  RRL  L     R  +    ++
Sbjct: 223 GDLAGGQILDFCAGAGGKTLAMAAHLDNRGQVFAYDIDARRLAPLYDRARRAGVRNVQVL 282

Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
              +            D V VDAPCS  GT RR PD  W    D +      Q ++L Q 
Sbjct: 283 SPTSDAARLGDLTGKMDGVFVDAPCSGAGTWRRRPDTKWRLTPDQLATRQEEQDRVLDQA 342

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-- 409
            +FV+PGGI+V+  CS+  +++E+ +   L   P      P  +        A A+ P  
Sbjct: 343 EAFVRPGGILVYVTCSIFAEENEDRIAAFLDRHPTYDIEDPGAAITASGGVHAGAVLPPA 402

Query: 410 --EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              G +R++P             DGF    LRR
Sbjct: 403 DGRGTLRLSPAKTA--------TDGFAITRLRR 427


>gi|149712409|ref|XP_001496238.1| PREDICTED: nucleolar protein 1, 120kDa [Equus caballus]
          Length = 810

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/340 (24%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
                  R  S     L + +A      ++   +L + +    ++   +A   P  I L 
Sbjct: 251 GTQREEGRSRSEYLHRLRKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLR 310

Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230
                      A  L    +    +                I + P +  G + +Q AS+
Sbjct: 311 TNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASS 370

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +PV       +  VLD+C APGGKT+ +   + +   + A D +  RL+ +  NL RL 
Sbjct: 371 MLPVMALAPQEHERVLDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLG 430

Query: 288 LYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +    +   D   +      FD VL+DAPCS TG I + P V   +D  D+++ A  Q++
Sbjct: 431 VTNTIVSHYDGRQFPKVVGGFDRVLLDAPCSGTGIISKDPAVKTNKDEKDVLRCAHLQKE 490

Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
           LLL  I  V    K GG +V+  CS+  +++E VV   L+     V LVP    + +   
Sbjct: 491 LLLSAIDSVNATSKTGGYLVYCTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ--- 545

Query: 403 MAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440
                +     R  P +    +    +  MDGFF    ++
Sbjct: 546 --EGFTRFRERRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 583


>gi|254421121|ref|ZP_05034845.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3]
 gi|196187298|gb|EDX82274.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3]
          Length = 433

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 161/445 (36%), Gaps = 40/445 (8%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  + +       +L      + +     +D+  +   V   LR   R+  ++      
Sbjct: 13  VLDSIAQGNQPAETVLKAWGTANRYAG--SKDRRAIADHVYKVLRARGRLSWIMGGREDG 70

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                    + L+  S+  I  L V +   +        R    +  +++     +    
Sbjct: 71  ---------RALVIGSLHAIDGLSVEEIEALHSGDGYGPRPLSKQERSRITAGQGKLPGW 121

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK- 192
                       + +PE+  E  +  +G                IDL V     T     
Sbjct: 122 V----------AAGLPEFVVEDFKATFGDRWAEEAHALMAPRAPIDLRVNDAAATVDAVE 171

Query: 193 -------LNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
                  L+    P   + L+   E    I +L GF  G + +QD  + +   L G    
Sbjct: 172 VELRNAGLSVARTPWSALGLRVPSEPPPNIQALDGFKAGKFEIQDEGSQVVCWLAGAQPG 231

Query: 243 LSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMD 297
            +V+D CA  GGKT   AQ +    K+ A DV  +RLE +R  L R  + A    I +  
Sbjct: 232 ATVVDYCAGGGGKTLGLAQAMGGQGKLIASDVVNKRLENIRPRLQRAGVEAELVLIGQNG 291

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                     D V VDAPCS +GT RR P+  W    +++ K    Q ++L Q    VKP
Sbjct: 292 GGLEAVNGRADLVFVDAPCSGSGTWRRRPEDAWRLTAEEVEKLHALQVRILSQATKLVKP 351

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+  CS+  +++E        ++P      P+  A   S       +   +  +  
Sbjct: 352 GGRLVYVTCSMLARENEASADAFEAANPDF---HPVAVADVLSAPQLTEAARARFAELAS 408

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
               ++   S+  DGFFA   +R  
Sbjct: 409 GARLRLSPASADTDGFFAAVYQRAA 433


>gi|167627567|ref|YP_001678067.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597568|gb|ABZ87566.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 425

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 186/448 (41%), Gaps = 36/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R V++  +  ++  R SL   ++ +  +     LS +D+  V+ +     R    ++
Sbjct: 1   MNTRAVAAKSILDIIDNRYSL-LTIEHKLIEH---NLSDKDKSFVKLLCYEFFRNYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            V    L     + K + + L+ + + QI  ++   YA ++  V  A ++ +     KLV
Sbjct: 57  NVASLYLA---EKTKLNAKILVMLGILQIFEINQPHYASINETVS-ACKNLKILWAKKLV 112

Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181
           N +LR++ R+   I           +  W    L+  Y  +           + ++I L 
Sbjct: 113 NGVLRQIVRDLEDIRPNYTEHKNHDLAPWLSNMLKEQYPIDYQKIAKAVNSKADMFIRLN 172

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236
              D +      +   +      LK   +      + S   F +G + +QD SA     +
Sbjct: 173 EAKDPQYVIDYFDKNNISYSKTELKNCIKLDKAIDVKSNTLFQQGYFSIQDISAQYMGHI 232

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
               NN  +LD CAAPGGKT  ++     AK+TA+D+  +RLE L+ N+ R+       +
Sbjct: 233 INVQNNDIILDACAAPGGKTTHILELAPQAKITAIDIIDKRLELLKENITRIAKNNHVNV 292

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                       ++ +++DAPCS+ GT++R+PD+   R ++DI      Q ++L    + 
Sbjct: 293 TKHDLTQPLAGQYNKIILDAPCSALGTLKRNPDIKVLRKSEDIKSIQTLQAEILDNLWNN 352

Query: 355 VKPG-GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
                G +++  CS+  Q+++  ++  L       E+V +        D           
Sbjct: 353 NLTNNGYLLYITCSILAQENQLQIKNFLSKH-QDAEIVEIKILENYKTDYG--------Y 403

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +I P             DGF+   ++++
Sbjct: 404 QILP--------TEDKGDGFYYCLIKKI 423


>gi|148667388|gb|EDK99804.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
 gi|148667389|gb|EDK99805.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
 gi|148667390|gb|EDK99806.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
          Length = 792

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 133/326 (40%), Gaps = 32/326 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++   +L   +    ++   +A   P  I L            A  L      
Sbjct: 260 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 319

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 320 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 379

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +      +   F       FD
Sbjct: 380 PGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIHYDGRQFPKVVGG-FD 438

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFS 364
            VL+DAPCS TG I + P V   +D  DI + A  Q++LLL  I  V    K GG +V+ 
Sbjct: 439 RVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVYC 498

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEK 422
            CS+  +++E VV   L+     V LVP    + +        +     R  P +    +
Sbjct: 499 TCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQARRFHPTLRSTRR 551

Query: 423 IDGVSSGMDGFFAVALRR----LIQP 444
               +  MDGFF    ++    + QP
Sbjct: 552 FYPHTHNMDGFFIAKFKKFSNSIPQP 577


>gi|50729408|ref|XP_416502.1| PREDICTED: similar to NOL1 protein [Gallus gallus]
          Length = 682

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 131/320 (40%), Gaps = 28/320 (8%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM- 197
           +A      ++  + L + +    ++   +A   P  + +            A  L     
Sbjct: 275 MAAYYSYSDFLLKMLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGV 334

Query: 198 -------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                      G+ + +    I + P +  G + +Q AS+ +PV       N  +LD+C 
Sbjct: 335 NLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVMALAPQENERILDMCC 394

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KL 306
           APGGKT+ +   + +   + A D +  RL  +  NL RL +    +   D   +      
Sbjct: 395 APGGKTSYIAQLMKNTGMILANDSNAERLRSVVGNLHRLGVTNAVVSNCDGRQFPKVLGG 454

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVV 362
           FD VL+DAPCS TG I + P +   +D  DI++ A  Q++LLL  I  V      GG +V
Sbjct: 455 FDRVLLDAPCSGTGVISKDPAIKTNKDEKDILRCAHLQKELLLSAIDSVNATSETGGYIV 514

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--L 420
           +  CS+  +++E VV   L+   + +    L+             +     R  P +   
Sbjct: 515 YCTCSITVEENEWVVDYALKKRNVRLVATGLDFG-------KEGFTRFKDRRFHPSLKST 567

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +    +  MDGFF   L++
Sbjct: 568 RRFYPHTHNMDGFFIAKLKK 587


>gi|163756471|ref|ZP_02163584.1| putative sun protein [Kordia algicida OT-1]
 gi|161323579|gb|EDP94915.1| putative sun protein [Kordia algicida OT-1]
          Length = 404

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 162/458 (35%), Gaps = 74/458 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N        L+ +  +      +++      A      RD+  V       +R+ 
Sbjct: 4   MRLHRNLVFSVIDGLNLIFNEGAYADKVVEKLLKRDARWG--SRDRKFVAETTYEIVRWK 61

Query: 61  PRIDAVLD---FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                + D        +L R  +++   LR  + ++                        
Sbjct: 62  RLYAEIADIKENYSRENLWRI-FAVWATLR-GI-EL------------------------ 94

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             + +L  +  RR+     E+ +       IP+W  E      G++      +A      
Sbjct: 95  PDWNQLAGTPTRRIKGRFDEVSKIRKIKESIPDWLDELGVAELGEDVWTKEINALNKQAD 154

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDA 228
           + L         E     L ++   T  I+            +I     F  G + VQDA
Sbjct: 155 VILRANTLRTTKEKLKALLASLEHETEDIKGHPSALRLKERANIFKNEAFKNGFFEVQDA 214

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
           ++ +  +       + V+D CA  GGK+     L+ +   + +LD+ + +L KL+    R
Sbjct: 215 NSQLVSEFLDVKPGMKVVDTCAGAGGKSLHLAALMENKGNLISLDIYEGKLRKLKRRARR 274

Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              +  +   + +     K     D VL+DAPCS  G +RR+PD  W    + + K    
Sbjct: 275 NGAHNIETRVITSTKVIKKLYDKADRVLIDAPCSGLGVLRRNPDAKWKIQPEFLDKIKDT 334

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+ +L +    VK GG +V++ CS+   +++E V+K L S+     +             
Sbjct: 335 QQDILQRYSRMVKSGGKMVYATCSILPSENQEQVEKFLASNDDFTLVED----------- 383

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                            +K+    SG DGF+   L+R 
Sbjct: 384 -----------------KKLLASESGFDGFYMALLQRK 404


>gi|167579362|ref|ZP_02372236.1| sun protein [Burkholderia thailandensis TXDOH]
          Length = 470

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/413 (24%), Positives = 168/413 (40%), Gaps = 32/413 (7%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD----VADY 101
           +  ++ I    +R     D ++  ++  + P     +  LL  + A ++  D     A +
Sbjct: 71  RGAIQDIAYRAMRRRGTADWLIAQLVAKAPP---AHVHALLVCAFALLVDDDEHAAYAPF 127

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLE 157
            VVD AV      +E      LVN++LRR  RE+                   W+ + +E
Sbjct: 128 TVVDQAVTAIGARRECSFAKGLVNAVLRRFLRERTVWLERLQSDRRARWNYEPWWIDAVE 187

Query: 158 NFYGKERVLAISDACISPL-YIDLTVKFDIETW------AHKLNAVMLPTGGIRLKELPE 210
             +       ++    S    + +  +            A +++A  +    IRL     
Sbjct: 188 RAWPDAWPRILASGDASGPLTLRVNARRMTADAYLDVLRAERIDAEKVGRHAIRLASAL- 246

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTAL 269
            +  +PGFA+G+  VQDA A +  +  G  + + VLD CAAPGGKT  ++     +V AL
Sbjct: 247 PVERIPGFADGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVAL 306

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +    R  ++  NL RL L A+       D   +   + FD VL D PCS++G +RRHPD
Sbjct: 307 ESDPARAPRIGENLARLSLAADVRVGDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPD 366

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W R   DI      QR++L      VKPGG ++++ CS+  ++ E + +    +    
Sbjct: 367 IRWLRRAADIPALVAEQRRILSALWPLVKPGGELLYATCSIFPEEGELLARWFGDACQDA 426

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           V L        +        +                G     DGFF    ++
Sbjct: 427 VRLDAPGQLLPQGATGGAPAA----------GGSDEPGRHVDHDGFFYARFQK 469


>gi|262195483|ref|YP_003266692.1| Fmu (Sun) domain protein [Haliangium ochraceum DSM 14365]
 gi|262078830|gb|ACY14799.1| Fmu (Sun) domain protein [Haliangium ochraceum DSM 14365]
          Length = 460

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 99/457 (21%), Positives = 181/457 (39%), Gaps = 40/457 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R ++                 L         + +   ++  V  ++   +R + RIDA L
Sbjct: 23  RSLALEAWQRTRIDWRFARDGLHGLLR---QQGVGAAERGAVSELIFGMIRNVRRIDAAL 79

Query: 68  DF--VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +   V   S  R   + + L  + +A+          V+      A+   +         
Sbjct: 80  EAGGVTAQSAGRVLDAERLLAYLVLAE----------VISPERAAAQTRPQVGAIDWQAV 129

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           + + +    +  + +RIA    +P+W  E L      ER   I+ +      + L     
Sbjct: 130 AAIDQRIAAESSVARRIALHDSLPDWLAEALVR-GLGERAEEIAGSLSGRASMTLRANTL 188

Query: 185 --DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQL 236
             D E     L    +     R            ++ +L  +  G + VQD  + +   L
Sbjct: 189 VGDREQLRAALAEDGVEVEPTRFARDGLVASGRSNLFALSSYKRGGFEVQDEGSQLIAAL 248

Query: 237 FGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   V+D CA  GGKT   A  + +  +V A D   R+L++LR  + R H     +
Sbjct: 249 CAPPLRSLVVDYCAGAGGKTLALAAALENRGRVVASDTDARKLQELRRRVKRAHASNVQV 308

Query: 294 IEMDAFDYCP------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           + +      P      +     VLVDAPCS+ GT+RRHP++ W    D+  +    Q  L
Sbjct: 309 LTLPPDGTWPAALAALQGTVQRVLVDAPCSAVGTMRRHPELRWRLSADEAARYPALQFAL 368

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
             + ++ + PGG ++++ C+L + +++ V++++L   P  + LVP +    +    A A 
Sbjct: 369 CERSLALLAPGGELIYATCTLLRDENQGVIERLLAVHPN-LSLVPASERVSEIWGAAAAA 427

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           +    + +      ++D  + G DGFFA  L RL QP
Sbjct: 428 A----LCVDEGRYLRVDPAAHGTDGFFAAVL-RLSQP 459


>gi|113971032|ref|YP_734825.1| Fmu (Sun) domain-containing protein [Shewanella sp. MR-4]
 gi|113885716|gb|ABI39768.1| Fmu (Sun) domain protein [Shewanella sp. MR-4]
          Length = 457

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 155/451 (34%), Gaps = 52/451 (11%)

Query: 12  SHLLS-CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
             LL   ++  +     +L   + +        +D+ ++R  +    R+     A  D  
Sbjct: 35  IKLLFDEILNTKQPADRVLANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFKATGDH- 91

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                 ++      +L  S    L        +     + A+   + +    L  S L  
Sbjct: 92  ------QQAPQFFAMLSASA---LIEAHPWQDIASAWHDLAQSPIDYQQLQSLSVSSLTD 142

Query: 131 VSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
                 +   + +     ++PEWF +         R   I      P     T   + +T
Sbjct: 143 KLALVRQQFPQASFELTDLLPEWFWQVCPIAPEL-RPNLIEAMSSRPPIWGRTQGINSQT 201

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +L A+       +     I L     ++  +  + EG   +QD ++ +  Q+     
Sbjct: 202 AVKQLQALEIDASLSLYFEDAINLGTKSMNLNEISLYKEGKIEIQDLASQVIGQICAPEP 261

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTAL-----------DVSKRRLEKLRCNLDRLHLYA 290
                D C+  GGKT QL       TA            D+    LE+L     R     
Sbjct: 262 WQHWWDTCSGAGGKTLQLRSLMQTATAKHNPFVGSIVSSDIRAHALEELSKRAQRAKFDG 321

Query: 291 EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             I    +         FD VLVDAPCS TGT RR+PD+ W    D +   A  Q  +L 
Sbjct: 322 ISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKAALQLDILS 381

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    VK GG +V++ CSL   ++E+VV   L+  P    LVP+   +            
Sbjct: 382 RSSKAVKLGGSLVYATCSLSPVENEQVVSAFLQQHP-EFSLVPIRHPFTGEQTE------ 434

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + + P          +  DG F   ++R
Sbjct: 435 --MLTVWP--------FEANTDGMFVARMQR 455


>gi|312797598|ref|YP_004030520.1| 16S rRNA m(5)C 967 methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312169373|emb|CBW76376.1| 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 460

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 99/433 (22%), Positives = 170/433 (39%), Gaps = 34/433 (7%)

Query: 28  LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLR 87
            L          + S + +  ++ +     R L R DA L  ++  +       +  +LR
Sbjct: 41  ALPDALATVHAGIASAQARGAIQDLAYRATRQLARADAWLATLVRRAPAE---HVANVLR 97

Query: 88  VSVAQILYLDV----ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI----ELL 139
            + A +   D      D+ VV+ AV+      +  H   LVN++LR + R +     E +
Sbjct: 98  CAFALLAEPDATRAYPDFTVVNQAVDAIAARADVAHTKGLVNAVLRNMVRSRPALLAEAM 157

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAIS--DACISPLYIDLTVKFDIETWAHKLNAVM 197
                    P W+ + L+  +  +    +   +A           + D+ T+  +L    
Sbjct: 158 LDPVTRWNYPRWWIDALQRTWPDDAQRLLEVGNAHAPMTLRVNRRQTDVATYLERLRTSG 217

Query: 198 L-------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
           +                 P  +  LPGFA+G   VQDA A     L    + + VLD CA
Sbjct: 218 IDALRNSACPDTALTLREPMPVERLPGFAQGTVSVQDAGAQRAAALLDVRDRMRVLDACA 277

Query: 251 APGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLF 307
           APGGKT  L   +  ++ ALD    R  +++ NL RL L A        +   +   + F
Sbjct: 278 APGGKTGHLLECADIELVALDSDAARAARIKENLARLKLRASVQIGDAGEPSQWHDGRRF 337

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS++G +RRHPD+ W R + DI+     QR+++      ++ GG +++  CS
Sbjct: 338 DRILADVPCSASGIVRRHPDIRWLRRSTDIIALVAEQRRIVQALWPLLERGGQLLYVTCS 397

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           +  ++ E+       +    V L         +             R+  D         
Sbjct: 398 IFPEEGEQQAAWFEHALEDAVRLDAPGQILPTAARSGDHCDAHRDARLDLDQ-------- 449

Query: 428 SGMDGFFAVALRR 440
              DGFF    ++
Sbjct: 450 ---DGFFYARFQK 459


>gi|296211184|ref|XP_002752300.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
           [Callithrix jacchus]
          Length = 843

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 306 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQTLINRGVN 365

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C+A
Sbjct: 366 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCSA 425

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 426 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 485

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 486 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 545

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 546 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 598

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 599 RFYPHTHNMDGFFIAKFKK 617


>gi|296211182|ref|XP_002752299.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
           [Callithrix jacchus]
          Length = 810

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   +L + +    ++   +A   P  + L            A  L    + 
Sbjct: 273 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQTLINRGVN 332

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C+A
Sbjct: 333 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCSA 392

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 393 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 452

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++LLL  I  V    K GG +V+
Sbjct: 453 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 512

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + +        +     R  P +    
Sbjct: 513 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 565

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 566 RFYPHTHNMDGFFIAKFKK 584


>gi|190889972|ref|YP_001976514.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli CIAT 652]
 gi|190695251|gb|ACE89336.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli CIAT 652]
          Length = 429

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 150/447 (33%), Gaps = 44/447 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++                        A    +++     +++    
Sbjct: 67  -----DSAAAIAHAVM-------------FRQWGFTPDRLAAELADDKFAPPPLSADALA 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
               +            IPEW +   E  +G   +     A  +   +DL         +
Sbjct: 109 AFAGRSLDDAPPHIRGDIPEWIQPSFEQAFGAGWLAEA-QALAARPTLDLRANILKSSRD 167

Query: 188 TWAHKLNAVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASASIPVQLF 237
                L         I    +            ++ +   F +G + VQD  + I   L 
Sbjct: 168 KAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
              +   +LD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 LAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +            D VLVDAPC+ TGT RR PD  W     ++ +    Q+  L Q   F
Sbjct: 288 DDPRGLSALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VKPGG +++  CS+  Q++EE V++    +P    +  L +      + A        + 
Sbjct: 348 VKPGGELIYVTCSVLPQENEEQVRRFAAGNPDFQIVSALPAWDALFGNDAPRPHSSDALT 407

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +       +   S+  DGFF   L+R 
Sbjct: 408 V------TLTPASTDTDGFFFCRLQRK 428


>gi|299531357|ref|ZP_07044767.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
           S44]
 gi|298720764|gb|EFI61711.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
           S44]
          Length = 461

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 110/459 (23%), Positives = 171/459 (37%), Gaps = 54/459 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +  L  ++    S   +L           + QR +  V+A++   LR L R  A+   
Sbjct: 29  AVAKALHGIL-GGQSSKAVLAQ---------VPQRLRPGVQALLFQVLRNLGRAQALQKQ 78

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +       K  +L                  + +V+ AVE AK +   R  +  +N+ LR
Sbjct: 79  LAPRPPAPKVSALLSTALALAWDETQAPYPPFTLVNQAVEAAK-NGAARAQSGFINACLR 137

Query: 130 RVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           R  RE+             +   P W+  RL+  + ++    I  A  +   + L V   
Sbjct: 138 RFLRERDALVSATDNDPVAVWNHPAWWIARLKKDHPQDW-QTILAANNAQPPMTLRVNAQ 196

Query: 186 IETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             T A   NA+                 E    +  LP F EG   VQD +A     L  
Sbjct: 197 KSTPAQYQNALQAMNLKSTAVAECGLQLEQAVPVQELPQFEEGWASVQDGAAQAAAPLLL 256

Query: 239 TLNNL------SVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                       VLD CAAPGGKTA         G +VTAL++   R  ++   L RL L
Sbjct: 257 AGLPEPQGRPLRVLDACAAPGGKTAHLLERAAPGGIEVTALEIDPERARRIGETLSRLGL 316

Query: 289 YA-EDIIEMDAFDYCPKKLF-----DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            A   + +  A     +        DA+L+DAPC+++G +RR PDV W R   D+ + A 
Sbjct: 317 KAKVLVADASAPQAWFESQCGGQFFDAILLDAPCTASGIVRRQPDVRWLRRESDVAQLAD 376

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL      ++PGG +V+  CS+ K + +  +Q  L  +     L            
Sbjct: 377 IQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAA 436

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +++                      DGFF   L +L
Sbjct: 437 KHDSVADN---------------PLGDHDGFFYALLEKL 460


>gi|114048257|ref|YP_738807.1| Fmu (Sun) domain-containing protein [Shewanella sp. MR-7]
 gi|113889699|gb|ABI43750.1| Fmu (Sun) domain protein [Shewanella sp. MR-7]
          Length = 457

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 152/451 (33%), Gaps = 52/451 (11%)

Query: 12  SHLLS-CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
             LL   ++  +     +L   + +        +D+ ++R  +    R+     A  D  
Sbjct: 35  IKLLFDEILNTKQPADRVLANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFKATGDH- 91

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                 ++      +L  S    L        +     E A+   + +    L  S L  
Sbjct: 92  ------QQAPQFFAMLSASA---LIEAHPWQDIASAWHELAQSPVDYQQLQSLSVSSLTD 142

Query: 131 VSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
                 +     +     ++PEWF +         R   I      P         + +T
Sbjct: 143 KLALVRQQFPEASFELTDLLPEWFWQVCPIAPEL-RPNLIEAMSSRPPIWGRAQGINSQT 201

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +L A+       +     I L     ++  +  + EG   +QD ++ +  Q+     
Sbjct: 202 AVKQLQALEIDASLSLYFDDAINLGTKSMNLNEISLYKEGKIEIQDLASQVIGQICSPEP 261

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTAL-----------DVSKRRLEKLRCNLDRLHLYA 290
                D C+  GGKT QL       TA            D+    LE+L     R     
Sbjct: 262 WQHWWDTCSGAGGKTLQLRSLMQTATAKHNPFVGSIVSSDIRAHALEELSKRAQRAKFDG 321

Query: 291 EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             I    +         FD VLVDAPCS TGT RR+PD+ W    D +   A  Q  +L 
Sbjct: 322 ISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKAALQLDILS 381

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    VK GG +V++ CSL   ++E+VV   L+       LVP+   +            
Sbjct: 382 RSSKAVKQGGSLVYATCSLSPVENEQVVSAFLQQH-SEFSLVPIRHPFTGEQTE------ 434

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + + P          +  DG F   ++R
Sbjct: 435 --MLTVWP--------FEANTDGMFVARMQR 455


>gi|264676496|ref|YP_003276402.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
           CNB-2]
 gi|262207008|gb|ACY31106.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
           CNB-2]
          Length = 461

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 110/459 (23%), Positives = 171/459 (37%), Gaps = 54/459 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +  L  ++    S   +L           + QR +  V+A++   LR L R  A+   
Sbjct: 29  AVAKALHGIL-GGQSSKAVLAQ---------VPQRLRPGVQALLFQVLRNLGRAQALQKQ 78

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +       K  +L                  + +V+ AVE AK +   R  +  +N+ LR
Sbjct: 79  LAPRPPAPKVSALLSTALALAWDETQAPYPPFTLVNQAVEAAK-NGAARAQSGFINACLR 137

Query: 130 RVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           R  RE+             +   P W+  RL+  + ++    I  A  +   + L V   
Sbjct: 138 RFLRERDALVSATDNDPVAVWNHPAWWIARLKKDHPQDW-QTILAANNAQPPMTLRVNAQ 196

Query: 186 IETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             T A   NA+                 E    +  LP F EG   VQD +A     L  
Sbjct: 197 KSTPAQYQNALQAMNLKSTAVAECGLQLEQAVPVQELPQFEEGWASVQDGAAQAAAPLLL 256

Query: 239 TLNNL------SVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                       VLD CAAPGGKTA         G +VTAL++   R  ++   L RL L
Sbjct: 257 AGLPEPQGRPLRVLDACAAPGGKTAHLLERAAPGGIEVTALEIDPERARRIGETLSRLGL 316

Query: 289 YA-EDIIEMDAFDYCPKKLF-----DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            A   + +  A     +        DA+L+DAPC+++G +RR PDV W R   D+ + A 
Sbjct: 317 KAKVLVADASAPQAWFESQCGGQLFDAILLDAPCTASGIVRRQPDVRWLRRESDVTQLAD 376

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL      ++PGG +V+  CS+ K + +  +Q  L  +     L            
Sbjct: 377 IQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAA 436

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +++                      DGFF   L +L
Sbjct: 437 KHDSVADN---------------PLGDHDGFFYALLEKL 460


>gi|93007290|ref|YP_581727.1| Fmu (Sun) [Psychrobacter cryohalolentis K5]
 gi|92394968|gb|ABE76243.1| Fmu (Sun) [Psychrobacter cryohalolentis K5]
          Length = 524

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 116/524 (22%), Positives = 202/524 (38%), Gaps = 111/524 (21%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R+     L  + +   SL  +LD          L   D+    A++  TLR    ++ +
Sbjct: 25  VRVRVIRTLLAI-QNGQSLASVLDPLL-----NSLHDGDKGFAHALLLTTLRQWYALERL 78

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           LD +  +S+  K+  ++  ++V + Q+LYL VAD+A +   VE AK  +   H   L+N+
Sbjct: 79  LDSLADNSIDEKE--VRTTIQVGLTQLLYLQVADHAAIHETVEAAKEIEF-AHATGLINA 135

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
           ILR+V++   +  ++      +P W   +L+  +  E+   +      P  + L V    
Sbjct: 136 ILRKVAKNPSKFRKKCDKKHSLPNWLAYQLKQDWS-EQYDDLMQGLRQPAPMFLRVNTAV 194

Query: 185 -DIETWAHKLNAVMLPTGGIRLK------------------------ELPESIVSLPGFA 219
             IE +   L    +    + L                             ++ +LP FA
Sbjct: 195 TSIEDYQQALVEFEVEADLVELTSGLQLENSSDTATSNSIVTKGLRLHQSTAVNALPQFA 254

Query: 220 EGVWWVQDASAS--------------------IPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
            G   VQD  A                         +  + N + +LD CAAPGGK A  
Sbjct: 255 HGAASVQDMHAQLAAPLIHSALLNKLSVKNDDADGDMDTSNNEIRILDACAAPGGKLAHW 314

Query: 260 IV-----------------------SGAKVTALDVSKRRLEKLRCNLDRLHLY------- 289
           +                        S  K+TA+D    R+E++  NL RL+L        
Sbjct: 315 LELISSDEQSPLFHVKQNEEFVSLVSKVKLTAIDNEAPRIERIYDNLQRLNLSQHDLQQA 374

Query: 290 ------AEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
                      +   +    KK     FDA+L+D+PC++TG IRRHPD+   R  +D+ +
Sbjct: 375 EKNIELNIVCADATTWQGAGKKKSKLVFDAILLDSPCTATGVIRRHPDISILRTEEDVEQ 434

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
           +A  Q  +L      +K GG +++  CS+ KQ++ E +Q  +        +   +   W 
Sbjct: 435 TALLQADILHNLWPQLKVGGYLLYVTCSILKQENVEQMQDFMTHYNNVAAVEFSDGCNW- 493

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  +      +  P   +         DGF+   L++  +
Sbjct: 494 ------GIEQAIGRQCLPIDSKS-------GDGFYYALLQKTAE 524


>gi|14520982|ref|NP_126457.1| nucleolar protein [Pyrococcus abyssi GE5]
 gi|5458199|emb|CAB49688.1| Nucleolar protein from the nop2 family [Pyrococcus abyssi GE5]
          Length = 311

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
                 W +  L      E+ L       +       +   +     +   V     G  
Sbjct: 18  ERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFC 77

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           L   P SI S P +  G+ ++Q+AS+  P           V D+ AAPGGKT+ L   + 
Sbjct: 78  LTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLME 137

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320
           +   + A DV + RL++ R NL RL +    +    +         FD +L+DAPC+ +G
Sbjct: 138 NKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSG 197

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           TI ++P+  W R  DDI      Q KL+ + +  +KPGGI+V+S CSL+ +++E V+Q V
Sbjct: 198 TIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWV 257

Query: 381 LRSSPIPVELVPLNSAYWK-SIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           L +    VEL+PL       +    + LS E     R+ PD+         G  GFF   
Sbjct: 258 LENF--DVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDV--------HGTSGFFVAK 307

Query: 438 LRRL 441
           +R+L
Sbjct: 308 IRKL 311


>gi|254468625|ref|ZP_05082031.1| Fmu (Sun) domain protein [beta proteobacterium KB13]
 gi|207087435|gb|EDZ64718.1| Fmu (Sun) domain protein [beta proteobacterium KB13]
          Length = 420

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 163/451 (36%), Gaps = 66/451 (14%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L   +         L   +  +    L  +++  V       +R               
Sbjct: 12  ALQDHLNSEHPADSNLSYFFKYNT--NLGVKERGEVAETYYGIIRNKL------------ 57

Query: 74  SLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVV-DLAVEQAKRDKENRHFAKLVNSILRRV 131
                           + + ++     +  VV  L +E++  D+E +  +      ++ +
Sbjct: 58  ----------------LYENLMQSSQPENLVVAHLVIEKSYSDEEIKVLSPDFTISIQAI 101

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
                ++         +PEW   +L   Y ++++  + +   SP Y+D+ V    E    
Sbjct: 102 KDRLKKISDLW-IRYSLPEWIFRKLAESYDEKKIKLVLNKLTSPSYLDVRVNTIKEKSRE 160

Query: 192 --------------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
                         K  A    +           I +LP F +G+  VQD  + I   + 
Sbjct: 161 VIIKNLQDNLSINPKKIAASNLSPIGVRLPRGSQIQNLPIFKDGLIEVQDEGSQILSFIV 220

Query: 238 GTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  V D CA  GGKT     ++    ++ A DV+ +RL  LR  L R  L      
Sbjct: 221 DANRKHMVADFCAGAGGKTLALGAMMSGSGRLYAFDVNDKRLTNLRKRLKRSGLSNTVCH 280

Query: 295 E----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                 D      +  FD VLVDAPCS  GTIRR+PD+ W  D D I +    Q  +L  
Sbjct: 281 HINNENDIRIKRLRGKFDRVLVDAPCSGLGTIRRNPDLKWKHDLDTIFEMQKKQLNILTA 340

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
                K GG ++++ CS   +++E+VV   L+ +    ++V +             +  +
Sbjct: 341 ASKLTKLGGRLIYATCSFMPEENEDVVNSFLKDNSG-FKVVSIQP-----------ILDK 388

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             I +T     K       MDGFFA  L R+
Sbjct: 389 YDIAVTSSDFFKTKFDEHDMDGFFAAVLERV 419


>gi|326912704|ref|XP_003202687.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           [Meleagris gallopavo]
          Length = 613

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 132/320 (41%), Gaps = 28/320 (8%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM- 197
           +A      ++  + L + +    ++   +A   P  + +            A  L     
Sbjct: 207 MAAYYSYSDFLLKMLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGV 266

Query: 198 -------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                      G+ + +    I + P +  G + +Q AS+ +PV       N  +LD+C 
Sbjct: 267 NLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVMALAPQENERILDMCC 326

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KL 306
           APGGKT+ +   + +   + A D +  RL  +  NL RL +    +   D   +      
Sbjct: 327 APGGKTSYIAQLMKNTGMILANDNNAERLRSVVGNLHRLGVTNAVVSNCDGRQFPKVLGG 386

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPCS TG I + P +   +D  DI++ A  Q++LLL  I  V    + GG VV
Sbjct: 387 FDRVLLDAPCSGTGVISKDPAIKTNKDEKDILRCAHLQKELLLSAIDSVSATSETGGYVV 446

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--L 420
           +  CS+  +++E VV   L+   + +    L+             +     R  P +   
Sbjct: 447 YCTCSITVEENEWVVDYALKKRNVRLVATGLDFG-------KEGFTRFKDRRFHPSLKST 499

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +    +  MDGFF   L++
Sbjct: 500 RRFYPHTHNMDGFFIAKLKK 519


>gi|224043899|ref|XP_002193312.1| PREDICTED: nucleolar protein 1, 120kDa [Taeniopygia guttata]
          Length = 778

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 129/320 (40%), Gaps = 28/320 (8%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM- 197
           +A      ++   +L + +    ++   +A   P  + +            A  L     
Sbjct: 370 MAAYYSYSDFLLAKLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGV 429

Query: 198 -------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                      G+ + +    I + P +  G + +Q AS+ +PV       N  +LD+C 
Sbjct: 430 NLDPLGKWSKTGLVIYDSTVPIGATPEYLAGHYMLQGASSLLPVMALAPQENERILDMCC 489

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL 306
           APGGKT+ +   + +   + A D S  RL  +  NL RL +    +   D   +      
Sbjct: 490 APGGKTSYIAQLMKNTGMILANDSSAERLRSVVGNLHRLGVTNAVVSNCDGRQFPKVIGG 549

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVV 362
           FD VL+DAPCS TG I + P V   +D  DI + A  Q++L+L  I  V      GG +V
Sbjct: 550 FDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELILSAIDSVNAASETGGYIV 609

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--L 420
           +  CS+  +++E VV   L+   + +    L+             +     R  P +   
Sbjct: 610 YCTCSIMVEENECVVDYALKKRNVRLVATGLDFG-------KEGFTRFKDRRFHPSLKST 662

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +    +  MDGFF    ++
Sbjct: 663 RRFYPHTHNMDGFFIAKFKK 682


>gi|269123621|ref|YP_003306198.1| Fmu (Sun) domain-containing protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268314947|gb|ACZ01321.1| Fmu (Sun) domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 422

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 97/438 (22%), Positives = 184/438 (42%), Gaps = 35/438 (7%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           LL  V+  +      L   + ++++   ++ ++  +  ++NVTL+ L  ID V+   L  
Sbjct: 10  LLDEVIENKKYSNLQLKYMFENNSY---TKGEKAFLNNMLNVTLKNLIYIDYVILK-LAR 65

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           S+ RK    +Q+LR+S+AQILY       V+  AVE  K +  N + A  +NS LR   R
Sbjct: 66  SIKRKT---KQILRLSIAQILYTSTDIAGVIYEAVELGKEE--NIYQANFINSTLRNFIR 120

Query: 134 EKIELL--QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF------D 185
           +K E+            P WF +++ N +G+++   +           + V        D
Sbjct: 121 KKDEIFEITPENIKLSYPTWFYDKVRNQFGEDKFREVLKRYKGKSTFSVRVNHKKISVND 180

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            +     +++ +L            +++    +  G   +QD S+ + V +    N   V
Sbjct: 181 FKDLLKMVDSEILFNISDVYYLNNNNVLKTKAYLTGDIVIQDGSSLLVVDMLAPSNEDEV 240

Query: 246 LDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           LD+ AAPGGK        +  K+ A D+ + ++  L+    +        I  D  ++  
Sbjct: 241 LDVAAAPGGKSLAILQKYNPKKLVATDIHEHKVNMLKEFESKYM--NFKAILADGREFSE 298

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              +D +L+D PCS  G + + P+ ++  D   I      Q+K+       +K GG +V+
Sbjct: 299 GI-YDKILLDVPCSGLGVLTKKPEKVYEIDLKVIKAIKKLQKKIFDNTYKLLKNGGEMVY 357

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C++ + ++   V   L      +E+V          D+ +     G           I
Sbjct: 358 STCTILENENTNNVAYFLEKY-SDLEVVDFEF----PQDVKIIKDEFGG--------NLI 404

Query: 424 DGVSSGMDGFFAVALRRL 441
              +  +DGF+ +  R+ 
Sbjct: 405 SYENEYLDGFYMIKFRKK 422


>gi|91090670|ref|XP_974410.1| PREDICTED: similar to CG8545 CG8545-PA [Tribolium castaneum]
 gi|270013309|gb|EFA09757.1| hypothetical protein TcasGA2_TC011896 [Tribolium castaneum]
          Length = 731

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 123/319 (38%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP 199
                  ++  E+    +    VL   +A      + +            A  L    + 
Sbjct: 231 CTYYSYNDFLMEKFMQLFPLTEVLEFLEASEVQRPLTIRTNSLKTRRRDLAQALINRGVN 290

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 291 LDPVGKWSKVGLVVYSSQVPIGATPEYLAGHYIIQGASSLLPVMALAPQENERILDMAAA 350

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGK + +   + +   + A DV+  R++ +  N  RL +    I  +D   +      F
Sbjct: 351 PGGKASHIAALMKNTGVLFANDVNSERIKAIVGNFHRLGVVNSVITCVDGRKFPKILKGF 410

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363
           D VL+DAPC+ TG + +   V  ++D  DI +    QR+LLL  I  +      GG +V+
Sbjct: 411 DRVLLDAPCTGTGVVAKDQSVKTSKDEQDIQRCYNLQRELLLAAIDCLNAKSETGGYLVY 470

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
           S CS+  +++E VV   L+   + +    L              +     R  P   +  
Sbjct: 471 STCSVLPEENEWVVDYALKKRNVKLVDTGLEFGN-------EGFTNYRQFRFHPSLKLTR 523

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    R+
Sbjct: 524 RFYPHTHNMDGFFVAKFRK 542


>gi|294101395|ref|YP_003553253.1| Fmu (Sun) domain protein [Aminobacterium colombiense DSM 12261]
 gi|293616375|gb|ADE56529.1| Fmu (Sun) domain protein [Aminobacterium colombiense DSM 12261]
          Length = 442

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 181/454 (39%), Gaps = 42/454 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             + ++L+ V  K    +  L           +++ D+IL  ++V   LR       V +
Sbjct: 5   EAALYVLTEV-SKGRFASESLRKVSDR-----MTEGDRILASSLVYAALRRQTLWKKVCE 58

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             L        +  +  L +  A I+ L      V+  A+    + +     A++VN++L
Sbjct: 59  NFLRFPFDSLSWCTRHALVIGAAGIIELRHFAPMVLVSALVDEIKKRGLEKEARIVNAVL 118

Query: 129 RRVSREKIELLQRIAGISII---------PEWFKERLENFYGKERVLAISDACISPLY-- 177
            RV      ++  +   S           P +   + ++ +G+   L + +      Y  
Sbjct: 119 HRVEERGKFIVDEMKKSSSFQDKALLGGIPLFVAYQWKDTWGQAETLKLINLFRIRPYAS 178

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQDASAS 231
           + +  K  I +    L    +      L E            +LPGF EG   VQ  S+ 
Sbjct: 179 LRVLPKDHIPSLVKGLKQDHIYGWPSPLLECSVRTASFAFPPNLPGFNEGKVTVQSESSM 238

Query: 232 -IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHL 288
                +     +  +LD+CA  G KT Q+      AK+ A ++SK R    R  L RL +
Sbjct: 239 LAGEMVTRLWKDGLILDMCAGRGIKTGQIATLLPHAKIEAWELSKGRCAAARRELKRLSI 298

Query: 289 Y-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                I + D+    P+   + V +DAPCS +GT  RHP+  W    + + +    Q+ L
Sbjct: 299 SQRVIIRQGDSLSMSPQSTPNLVFLDAPCSGSGTWSRHPESRWALTKEKMEELVQLQKGL 358

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L + +  V PGG++++S CSL +Q++E+V+ +VL  +   +E+    S            
Sbjct: 359 LRKAVDLVAPGGLILYSTCSLLRQENEQVIAEVLADNHNLIEMSLPLSGRHVRKGRPWGT 418

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFF-AVALRR 440
                  I P +          +DGF+    L+R
Sbjct: 419 Y------IWPLLPW--------LDGFYMMAILKR 438


>gi|110632825|ref|YP_673033.1| Fmu (Sun) [Mesorhizobium sp. BNC1]
 gi|110283809|gb|ABG61868.1| Fmu (Sun) [Chelativorans sp. BNC1]
          Length = 427

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 144/450 (32%), Gaps = 46/450 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +  +       +        F      D+  +   V   LR       + D
Sbjct: 8   AAAIEILEDIETRHRPAADAMRDWGLSHRFAG--AGDRAAIGNFVYDALRRRRAAAWIFD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                +           L +    +L   V          E  +   ++R    ++    
Sbjct: 66  ADSPRT-----------LVLGSY-LLESGVLPQ-------ELGRLIADDRFAPSMLTEAE 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185
               + ++         +  PEW  E L         +    A  S   +D+ V      
Sbjct: 107 LAALQARLSEELPAPARANAPEWC-EPLMEEAFGAAWVDEGAALASRPPLDMRVNRLKAS 165

Query: 186 IETWAHKLNAVMLPTGGIRL----------KELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            E     L         I                 +I + P F +G + VQD  + I  +
Sbjct: 166 REKVLASLARAGAKPARIAPSGLRIAPISGDGRHPNIQAEPAFQKGWFEVQDEGSQIVAE 225

Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L G      VLD CA  GGK    + ++ +  ++ A D  K+RL  +   L R       
Sbjct: 226 LAGPAQGSQVLDFCAGAGGKTLAFSAMMDNRGQIYAFDADKQRLAPIFDRLKRAGCRNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +I  +      +   D V+VDAPC+ +GT RR PD  W      +      Q  +L    
Sbjct: 286 VIADEGQLTRLEGQMDLVVVDAPCTGSGTWRRRPDAKWRLTAQQLEARRAEQATILDAAS 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            +VKPGG + +  CS+ ++++ E     L  SP             +    A        
Sbjct: 346 RYVKPGGRLAYITCSIFQEENAEQASAFLARSPQFSAADHGALWRERFNSAAAEPRIGNG 405

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           I +TP         ++G DGF+     R  
Sbjct: 406 ITLTP--------ATTGTDGFYFACFGRAA 427


>gi|171464329|ref|YP_001798442.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193867|gb|ACB44828.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 417

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 99/411 (24%), Positives = 164/411 (39%), Gaps = 41/411 (9%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++  +S VM    SLT +LD          L   ++ +V+++    LR   R   ++  
Sbjct: 18  IAAQAISEVMD-GRSLTEVLDQ---------LDAHERPIVQSLSFDALRKWVRSHELIKQ 67

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDV-----ADYAVVDLAVEQAKRDKENRHFAKLV 124
               + PR    +  LL V +A  L  +        Y +VD AV+      +  +   LV
Sbjct: 68  FAPKTPPR---EVDHLLSVGIALFLQNEAGGKSYPAYTIVDQAVKACGEYDKTMYAKGLV 124

Query: 125 NSILRR-----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178
           N++LR+        E  +           P W++  ++  Y K+    +          +
Sbjct: 125 NAVLRKVSLMVQPPEGEKRYTPDPIPMYGPAWWRANIKRNYSKQWQSILFQQAKRAPLIL 184

Query: 179 DLTVKFDIETWAHKLNAV------------MLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            +  K         L A              +      L      +   PGF      VQ
Sbjct: 185 RVYQKQYAREQYQALLAEAGISSKPIAEVAGVRRSFALLLPEAVPVSDPPGFYSSAVSVQ 244

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDR 285
           DA A +   L    +   VLD CAAPGGKTA L+  +   + AL++   R+ K+  NLDR
Sbjct: 245 DAGAQLAAVLLNPQDGELVLDACAAPGGKTAHLLKLADCSMRALELDGERIGKIGGNLDR 304

Query: 286 LHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L L+++ +           +     FD +L+DAPCS +G + RHPD+ + R   D+    
Sbjct: 305 LRLHSDKVRVLRGDASKAAWWDGTPFDKILLDAPCSVSGIVARHPDIPFLRREADVRALQ 364

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             QR +L Q    +K GG +++  CS+  ++ E+         P  V L  
Sbjct: 365 ERQRAILNQAWKMLKSGGALLYVTCSIFVEEGEDKANWFTEQHPNAVRLDA 415


>gi|320169159|gb|EFW46058.1| nucleolar family member protein [Capsaspora owczarzaki ATCC 30864]
          Length = 746

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 140/360 (38%), Gaps = 21/360 (5%)

Query: 93  ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK-IELLQRIAGISIIPEW 151
           +L   + D  +V    + AK     R  ++ +  + R ++             + + P  
Sbjct: 212 LLQQRIKDNIMV--LADFAKLRDPERSRSEYMEVLTRDLTLYYGYSDYLMGKLLELFPLG 269

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
                       R ++I    +     DL                    G + + + P  
Sbjct: 270 EIVEFLEANESPRPISIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLV-IFDSPVP 328

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268
           I + P +  G + +Q AS+ +PV       +  +L +CAAPGGKTA     + +   + A
Sbjct: 329 IGATPEYLAGHYMIQSASSFLPVMAMAPQEHERILTMCAAPGGKTAYCAALMKNTGVIFA 388

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPD 327
            D SK RL  L  N  R+ +    +   D   +      FD VL+DAPCS TG I +   
Sbjct: 389 NDASKDRLRALVANTHRMGITNTIVCNYDGRAFPKVMGNFDRVLLDAPCSGTGVIAKDQS 448

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           V   +  DDI++ +  Q++L+L  I  V    K GG +V+S CS+  +++E V+   LR 
Sbjct: 449 VKTNKSDDDIMRCSTLQKELILAAIDSVDANSKTGGYIVYSTCSITVEENEWVIDYALRK 508

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFFAVALRRL 441
             + +    L+                   R  P   +  +       MDGFF    +++
Sbjct: 509 RNVKLVETGLDFGQPGFKSFRE-------RRFHPTVSLSRRFYPHVHNMDGFFVAKFKKI 561


>gi|320169127|gb|EFW46026.1| ribosomal RNA small subunit methyltransferase b [Capsaspora
           owczarzaki ATCC 30864]
          Length = 732

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 140/360 (38%), Gaps = 21/360 (5%)

Query: 93  ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK-IELLQRIAGISIIPEW 151
           +L   + D  +V    + AK     R  ++ +  + R ++             + + P  
Sbjct: 243 LLQQRIKDNIMV--LADFAKLRDPERSRSEYMEVLTRDLTLYYGYSDYLMGKLLELFPLG 300

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
                       R ++I    +     DL                    G + + + P  
Sbjct: 301 EIVEFLEANESPRPISIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLV-IFDSPVP 359

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268
           I + P +  G + +Q AS+ +PV       +  +L +CAAPGGKTA     + +   + A
Sbjct: 360 IGATPEYLAGHYMIQSASSFLPVMAMAPQEHERILTMCAAPGGKTAYCAALMKNTGVIFA 419

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPD 327
            D SK RL  L  N  R+ +    +   D   +      FD VL+DAPCS TG I +   
Sbjct: 420 NDASKDRLRALVANTHRMGITNTIVCNYDGRAFPKVMGNFDRVLLDAPCSGTGVIAKDQS 479

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           V   +  DDI++ +  Q++L+L  I  V    K GG +V+S CS+  +++E V+   LR 
Sbjct: 480 VKTNKSDDDIMRCSTLQKELILAAIDSVDANSKTGGYIVYSTCSITVEENEWVIDYALRK 539

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFFAVALRRL 441
             + +    L+                   R  P   +  +       MDGFF    +++
Sbjct: 540 RNVKLVETGLDFGQPGFKSFRE-------RRFHPTVSLSRRFYPHVHNMDGFFVAKFKKI 592


>gi|300775571|ref|ZP_07085432.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910]
 gi|300505598|gb|EFK36735.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910]
          Length = 401

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 154/453 (33%), Gaps = 77/453 (16%)

Query: 8   RLVSS---HLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           R ++      L      K      +++     +       +D+ +V  I    +R+  R+
Sbjct: 6   RNLAIGIHDALQETFFEKNKYADKVIERLLKANKKWG--SQDRAVVSEIFYNIIRWKKRL 63

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +  +   +       K  +  LL                            K+   F  +
Sbjct: 64  EYYMGEGV-KPNNIYKLIIAYLL----------------------WSKTNYKKFEEFDGI 100

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
             + +    ++     +  A    IP+W  E LE   G      ++          +   
Sbjct: 101 KIADILTKLKKNTVPTK--AIEHSIPDWLAETLEKELGANWEREMTALNEQAP--TVLRA 156

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPES----------IVSLPGFAEGVWWVQDASASIP 233
             + T   +L + +   G +                  +     F EG++ VQDAS+   
Sbjct: 157 NSLRTTTKELISDLSDEGVVSFPVNGYPDAVQLEEKKNVFLTTAFKEGLFEVQDASSQKI 216

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
                      V+D CA  GGKT  L   + +  ++ ALD+   +L +L+    R   + 
Sbjct: 217 GYFLDVKEGQRVVDACAGAGGKTLHLAALMKNKGQIIALDIFDWKLAELKRRAKRAGAHN 276

Query: 291 EDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +   +  +       +  D +L+DAPCS  G ++R+PD  W  D D I +    Q+++L
Sbjct: 277 IETRMISDNKVIKRLHEKADRLLIDAPCSGLGVLKRNPDSKWKIDQDFIDRIKKEQQQIL 336

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+   ++   V++ ++++P    +        +         
Sbjct: 337 QDYSKMLKKGGKMVYATCSILPSENNLQVEEFIKNNPGFKMIKDEKVMPSE--------- 387

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                               G DGF+   + R+
Sbjct: 388 --------------------GYDGFYMALIERV 400


>gi|117921308|ref|YP_870500.1| Fmu (Sun) domain-containing protein [Shewanella sp. ANA-3]
 gi|117613640|gb|ABK49094.1| Fmu (Sun) domain protein [Shewanella sp. ANA-3]
          Length = 469

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 152/451 (33%), Gaps = 52/451 (11%)

Query: 12  SHLLS-CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
             LL   ++  +     +L   + +        +D+ ++R  +    R+     A  D  
Sbjct: 47  IKLLFDEILNTKQPADRVLANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFKATGDH- 103

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                 ++      +L  S    L        +     E A+   + +    L  + L  
Sbjct: 104 ------QQAPQFFAMLSASA---LIEAHPWQDIAQAWHELAQSPVDYQQLQSLSVNRLTD 154

Query: 131 VSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
                 +    ++     ++PEWF +         R   I      P         D +T
Sbjct: 155 KLALVRQQFPEVSFELTDLLPEWFWQVCPIAAEL-RPNLIEAMSSRPPIWGRAQGIDSQT 213

Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +L A+               L     ++  +  + EG   +QD ++ +  Q+     
Sbjct: 214 AVKQLQALEIDASLSPYFADAFNLGTKSMNLNEISLYKEGKIEIQDLASQVIGQICAPDP 273

Query: 242 NLSVLDLCAAPGGKTAQLIVSGA-----------KVTALDVSKRRLEKLRCNLDRLHLYA 290
                D C+  GGKT QL                 + + D+    LE+L     R     
Sbjct: 274 WQHWWDACSGAGGKTLQLRSLMQTAATKQNPLVGSIVSSDIRAHALEELSKRAQRARFDG 333

Query: 291 EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             I    +         FD VLVDAPCS TGT RR+PD+ W    D +   A  Q  +L 
Sbjct: 334 ISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKATLQLDILS 393

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    VK GG +V++ CSL   ++E+VV   L+  P    LVP+   +            
Sbjct: 394 RSSKAVKQGGSLVYATCSLSPVENEQVVSAFLQQHP-EFSLVPIRHPFTGEQT------- 445

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              + + P          +  DG F   ++R
Sbjct: 446 -KMLTVWP--------FEANTDGMFVARMQR 467


>gi|296131699|ref|YP_003638946.1| RNA methylase, NOL1/NOP2/sun family [Thermincola sp. JR]
 gi|296030277|gb|ADG81045.1| RNA methylase, NOL1/NOP2/sun family [Thermincola potens JR]
          Length = 460

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 129/308 (41%), Gaps = 26/308 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
           +  +P  F E+++   G+E      ++        + V       ++   ++   + P  
Sbjct: 1   MPELPAKFIEKMKLLLGEEEFNLFCESYGQEAAQGIRVNPLKISRDSLVSRVPFSLRPVP 60

Query: 202 GIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
             RL             P  A G++++Q+ SA   V++        +LDLCAAPGGK+  
Sbjct: 61  WCRLGFYYSPDDRPGKHPYHAAGLYYIQEPSAMAVVEILQPQPGERILDLCAAPGGKSTH 120

Query: 259 LIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVD 313
           +         + A +++  R++ L  NL+R       +          +    FD +LVD
Sbjct: 121 IYSYLGHTGLLVANEINANRVKALAENLERWGARNILVTNETPEKLAERMPAYFDKILVD 180

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+ P+           + A  Q+ LL Q  S +KPGG++V+S C+   +++
Sbjct: 181 APCSGEGMFRKLPEACLDWSEGKSQRCAAMQKNLLAQAASMLKPGGVLVYSTCTFSPEEN 240

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           EE V   L++     E+ P+ + +     +A      G +RI P  ++          G 
Sbjct: 241 EEQVNSFLQAH-NDFEICPVENDWLAPGTLA------GTVRIWPHKVQGE--------GH 285

Query: 434 FAVALRRL 441
           F   LR+ 
Sbjct: 286 FVARLRKK 293


>gi|281203041|gb|EFA77242.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
          Length = 403

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 130/320 (40%), Gaps = 27/320 (8%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK--------- 192
           +A       W  +     +     L   +A  +   + +                     
Sbjct: 1   MATYFGYSSWLVDVFLKIFNVSETLEFLEANETQRPLTIRTNTLKTKRKDLADVLSTRGV 60

Query: 193 -LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            L  +     G+ + +   +I + P +  G +  Q AS+ +PV          VLD+CA+
Sbjct: 61  HLEPIKWSQVGLTIYDSQVAIGATPEYLAGHYIQQSASSFLPVLALEPQPGERVLDMCAS 120

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT  +   + +   + A D++K R+  L  N+ RL +    +  +D  +Y  +   F
Sbjct: 121 PGGKTTYIASLMKNTGVLVANDINKERMRSLVANIHRLGVRNTVVSNLDGREYPSRMGGF 180

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VLVDAPC   G I +   +  T+   D+ K    Q++L+L  I  V    K GGI+V+
Sbjct: 181 DRVLVDAPCVGLGVIAKDQQIKMTKSERDVTKCTHIQKELILHAIDSVDANSKTGGIIVY 240

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
           S CSL  +++E VV   L+   + +    +        +           R  P+  + +
Sbjct: 241 STCSLTVEENEAVVDYALKKRHVQLVDTSIEFGVQGFTNYREQ-------RFNPNLILTK 293

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +    +  MDGF+    ++L
Sbjct: 294 RFYPHTHNMDGFYVAKFKKL 313


>gi|256071287|ref|XP_002571972.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
 gi|238657122|emb|CAZ28202.1| nucleolar protein nol1/nop2, putative [Schistosoma mansoni]
          Length = 479

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 24/316 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIETWAHKLNA----- 195
                  ++   +L + + KE V  +    +         T+K      A  L       
Sbjct: 162 CSRYSYNQFLMVKLLDLFPKEIVEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNL 221

Query: 196 ---VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
                    G+ +      + + P +  G + +Q AS+ +PV          +LDLCAAP
Sbjct: 222 DPLEPWSKVGLVVYSSQVPLGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAP 281

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FD 308
           GGKT  +   + +   + A +++  R + L  N  R+ +    I   +   +      FD
Sbjct: 282 GGKTTYIAQLMKNTGTIFANEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKIMSNFD 341

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VLVDAPCS TG I + P V  T++ D+I K    Q++LL+  I   K GG VV+S CS+
Sbjct: 342 RVLVDAPCSGTGIIAKDPSVKTTKNNDEIQKCVELQKRLLVAAIDSCKVGGYVVYSTCSI 401

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML--EKIDGV 426
             +++E VV   LR   + +E   L              +     +  P M    +    
Sbjct: 402 LVEENENVVNFALRRRKVRLEETKLFG--------EKGFTAFKGYQFHPHMTRVRRFYPH 453

Query: 427 SSGMDGFFAVALRRLI 442
              +DGFF   ++++ 
Sbjct: 454 KHNVDGFFVAKMKKMA 469


>gi|256820374|ref|YP_003141653.1| Fmu (Sun) domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581957|gb|ACU93092.1| Fmu (Sun) domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 412

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 158/453 (34%), Gaps = 67/453 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N        L+ +  +      +++ +           RD+  +   +   +R+ 
Sbjct: 9   MKLHRNLVDAVIEGLTFIFNEGQYADKVVEKQLKKDKRWG--ARDRAFIAETIYDIVRWK 66

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRV-SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                + +         + +++  L R+ +V                     K       
Sbjct: 67  RLYAEIAEVY-------EPFTVHNLRRMFAVW-----------------ATLKSIALPDW 102

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                ++  RR+  +  EL +       +P+W         G+        A  S   + 
Sbjct: 103 GNYFEDTPARRIKGKFDELSKVRKLRESVPDWLDTLGAQELGETLWTDELHALNSLAPVV 162

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASA 230
           L V      +E     L    + T  +R            +I     FA+G++ VQDAS+
Sbjct: 163 LRVNTLKTSLEHLQQFLRQEGVETYPLRDYPDALQLVERSNIFKTQAFADGLFEVQDASS 222

Query: 231 SIPVQLFG-TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
                          V+D CA  GGKT  L   + +  ++ A+D+ +++L++L+    R 
Sbjct: 223 QKVAPFMQIDDKVKRVIDTCAGAGGKTLHLATLMQNKGQIIAMDIYEQKLQELKRRARRN 282

Query: 287 HLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            ++  +   ++          FD VL+DAPCS  G +RR+PD  W    + + +    Q+
Sbjct: 283 GVFNIETKLIEPKQLKRMHGTFDRVLIDAPCSGLGVLRRNPDAKWKLQPEFLDEIRTTQQ 342

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L Q    +K GG +V++ CS+   ++ + VQ  L S       +              
Sbjct: 343 EILQQYSKLLKKGGKLVYATCSILPSENHQQVQTFLASEVGKEYRLEAEEV--------- 393

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                            I    SG DGF+   L
Sbjct: 394 -----------------IFAHQSGYDGFYMARL 409


>gi|256071289|ref|XP_002571973.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
 gi|238657123|emb|CAZ28203.1| nucleolar protein nol1/nop2, putative [Schistosoma mansoni]
          Length = 490

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 14/244 (5%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           +      + + P +  G + +Q AS+ +PV          +LDLCAAPGGKT  +   + 
Sbjct: 245 VYSSQVPLGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAPGGKTTYIAQLMK 304

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320
           +   + A +++  R + L  N  R+ +    I   +   +      FD VLVDAPCS TG
Sbjct: 305 NTGTIFANEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKIMSNFDRVLVDAPCSGTG 364

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            I + P V  T++ D+I K    Q++LL+  I   K GG VV+S CS+  +++E VV   
Sbjct: 365 IIAKDPSVKTTKNNDEIQKCVELQKRLLVAAIDSCKVGGYVVYSTCSILVEENENVVNFA 424

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML--EKIDGVSSGMDGFFAVAL 438
           LR   + +E   L              +     +  P M    +       +DGFF   +
Sbjct: 425 LRRRKVRLEETKLFG--------EKGFTAFKGYQFHPHMTRVRRFYPHKHNVDGFFVAKM 476

Query: 439 RRLI 442
           +++ 
Sbjct: 477 KKMA 480


>gi|282891223|ref|ZP_06299726.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498916|gb|EFB41232.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 417

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 172/448 (38%), Gaps = 45/448 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
             ++AR  +   +   +++   L+  L+      +   L   D    + I   ++R    
Sbjct: 2   PQIHAREAAFLAVYSFLKEGKFLSESLENWKQKESPSSL---DFSFAQDIAYGSVRMALA 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           +D +            K   + LLR ++ Q  +      YA+   +   AK+   +  F+
Sbjct: 59  LDYIAKSTAERQSLSLKVKERSLLRTAIYQAAFQRSTPLYAIGQESGNLAKKYC-HPTFS 117

Query: 122 KLVNSILRR-----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
             +N++LR+         +   LQ ++     P    E   + +G E+   + +    P 
Sbjct: 118 SFLNALLRKLGSGIPPLPEGNSLQDLSIRYSYPLPLVEAFLDDFGLEKCKQMLELGNHPA 177

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF-AEGVWWVQDASAS--IP 233
              + ++  +     +   +             +   +L  F      ++Q+ +    + 
Sbjct: 178 PTMVRIRPHVSLTEDEKEKLTCIPELSPHLACIKETGTLSIFSQSPHTYIQNGTPYLLME 237

Query: 234 VQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  ++LDLCA+PGGK   A      A + A DVS+R+L+ L+ N  +  L   
Sbjct: 238 HLRQSAENPQTILDLCASPGGKLLLAHDFYPSATLFANDVSERKLKTLQENCHKYQL-NV 296

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
            +       +   + FD ++VDAPCS+TG + + P+  W    + + +    Q +LL   
Sbjct: 297 SLSCSKGEFFASDRRFDLIIVDAPCSNTGVLNKRPEARWRFSPESLKQLEETQLQLLAHA 356

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
            + +   G + +  CS+  Q++E++ QK+ + S + +                       
Sbjct: 357 RTLLSDKGEIWYLTCSILSQENEKLAQKISQKSGLFMR---------------------- 394

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALR 439
                    + I   + G+DG FA ALR
Sbjct: 395 -------TSQTILPNALGLDGGFACALR 415


>gi|327192007|gb|EGE58988.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli CNPAF512]
          Length = 429

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 151/448 (33%), Gaps = 46/448 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++                        A    +++     + +    
Sbjct: 67  -----DSAAAMAHAVM-------------FRQWGFTPDRLAAELADDKFAPPSLAADALA 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
               +            IPEW +   E  +G   +     A  +   +DL       +  
Sbjct: 109 AFASRSLDDAPPHIRGDIPEWIQPSFEQAFGAGWLAEA-QALAARPTLDLRANILKASRD 167

Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237
             + A+                           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
              ++  +LD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 LAKDDEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +            D VLVDAPC+ TGT RR PD  W     ++ +    Q+  L Q   F
Sbjct: 288 DDPRGLSALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY-WKSIDMAMALSPEGWI 413
           VKPGG +++  CS+  Q++EE V++    +P    +  L +       D     S +G  
Sbjct: 348 VKPGGELIYVTCSVLPQENEEQVRRFAADNPDFQIVSALPAWDALFGKDAPRPHSSDG-- 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +   +   S+  DGFF   L+R 
Sbjct: 406 -----LAVTLTPASTDTDGFFFCRLQRK 428


>gi|157376427|ref|YP_001475027.1| Fmu (Sun) domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157318801|gb|ABV37899.1| Fmu (Sun) domain protein [Shewanella sediminis HAW-EB3]
          Length = 459

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 151/447 (33%), Gaps = 51/447 (11%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75
             VM K+     ++   +  +       +D+ ++R  +    R+       L+       
Sbjct: 41  HQVMDKQQPADRVVGEYFRVNKKHG--SKDRRVIRESLFAMFRWWG----WLNKFSD--- 91

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
             +       +  + A +     A + ++    E +  D     + +   S        K
Sbjct: 92  -AQSSQAWFSMLTATATM--ESHAWHDIIQAWGEFSGIDFSGSSYNQDAPSTAFPCVSSK 148

Query: 136 IELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
            E +             ++P WF +        +R+  +      P         D  T 
Sbjct: 149 CEWMNAQFAPLTFDTDELVPGWFWQVCPIEDAAQRLAMVESLSSRPPIWSRAQNIDTTTA 208

Query: 190 AHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
             +LN       A    +  I L     ++  L  + EG   +QD  + +   +     N
Sbjct: 209 IEQLNLVDVPATASDYFSDTINLGHKSINLNGLSLYKEGKLEIQDLGSQVIGHICAPKEN 268

Query: 243 LSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
               D C+  GGK          Q   S   + A D+ ++ LE+L     R       + 
Sbjct: 269 DLWWDTCSGAGGKSLQLRSLMLQQSSQSTGSIIASDIRRKPLEELAKRAKRAGFKGITVS 328

Query: 295 EMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              + +   P   FD VLVDAPCS TGT RR+PD+ W    + +      Q  +L +   
Sbjct: 329 PWKSDELPVPHAHFDGVLVDAPCSCTGTWRRNPDMRWIDAVEVVQDKPELQLDILRRSSQ 388

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VK GG +V++ CSL   ++EEVV   L                 +SI      +    +
Sbjct: 389 AVKRGGTLVYATCSLSPVENEEVVNAFLAEQSEF---------TLESITHPFTGNETEML 439

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
            + P          +  DG F   +RR
Sbjct: 440 TVFP--------FEADTDGMFVARMRR 458


>gi|237746959|ref|ZP_04577439.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS]
 gi|229378310|gb|EEO28401.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS]
          Length = 441

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 181/452 (40%), Gaps = 52/452 (11%)

Query: 8   RLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           RL  ++  ++ V  K  SL   L   + D +        +  ++ I   TLR L  +  +
Sbjct: 22  RLAGAADAVTRV-AKGQSLPDALTAVFSDVSA---DAAARGAIQDIAYHTLRQLGLVSFL 77

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAVVDLAVEQAKRDKENRHFAK 122
              +           LQ LL  ++A ++     L    Y  VD AVE A   +  R    
Sbjct: 78  TRKLTTRPPE--PVMLQSLLHCALALLIPENNTLRYEPYTTVDQAVEAAAAIRVLRKAKG 135

Query: 123 LVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           LVN++LRR  RE+        Q        P W+ E+ +  Y       I  A      +
Sbjct: 136 LVNAVLRRFLREQPNFLKAARQDSEASWNYPGWWIEQAQQAYPVHW-KTILSAGNGVPPL 194

Query: 179 DLTVKFDIETWAHKLN-AVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASAS 231
            L V     T    L  A     G + +            +  +PGF EG+  VQDA+A 
Sbjct: 195 TLRVNVRKTTVNDYLELAEAAGIGCMAIGPYAVKLIQPIPVNRIPGFMEGLVSVQDAAAQ 254

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA 290
           +   L G  + + VLD CAAPGGK   ++      + ALD  +RRL  ++ NL+RL L A
Sbjct: 255 LAAPLLGLEDGMKVLDACAAPGGKAGHMLEMAHIDLLALDRDRRRLRMIQENLERLGLRA 314

Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                +    D+  K LFD +L D PC+++G IRRHPD+ W R   D  + +    ++L 
Sbjct: 315 DIKTGDATRSDWWDKSLFDCILADVPCTASGIIRRHPDIRWLRRQSDSHELSLVSARILK 374

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                +KPGG ++ + CS+  ++SE   +                               
Sbjct: 375 NLWPMLKPGGKLLLATCSIWPEESERQAEAFAA--------------------------Y 408

Query: 410 EGWIRI-TPDMLEKIDGVSSGMDGFFAVALRR 440
            G +R+  P  L       +  DG F    ++
Sbjct: 409 SGALRLPAPGQLLPTVNGMNDHDGLFYALFKK 440


>gi|312377716|gb|EFR24477.1| hypothetical protein AND_10896 [Anopheles darlingi]
          Length = 885

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 134/335 (40%), Gaps = 28/335 (8%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK--- 183
             R        L + +       E+F   L + +    +L   +A      I +      
Sbjct: 297 PERSRCEYIDLLRKDLCLYYSYNEYFMNLLMDLFSPNELLEFLEASELQRPITIRTNSLK 356

Query: 184 FDIETWAHKLNAVM--------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 A  L                G+ +      + + P +  G + +Q  S+ +PV 
Sbjct: 357 TRRRDLAQALINRGINLDPIGKWSKDGLVVYTSQVPLGATPEYFAGHYMLQGGSSMLPVL 416

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                 N  +LD+CAAPGGK++ +   + +   +   D ++ RL  +  N  RL +    
Sbjct: 417 ALAPEENERILDMCAAPGGKSSHIAALMKNTGVLVVNDSNRERLHAVLGNFHRLGVQNAI 476

Query: 293 IIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           I  MD   +      FD VL+DAPC+ +G I + P V  ++   D+ K    QR+LLL  
Sbjct: 477 ITCMDGIKFRDAMKGFDRVLLDAPCTGSGVIAKDPSVKTSKTEIDVQKCYNLQRRLLLSA 536

Query: 352 ISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           I  +    K GG +V+S CS+  Q++E V+   L+     V LVPL   +         L
Sbjct: 537 IDCLSAKSKTGGYLVYSTCSVLPQENEWVIDFALKKR--NVRLVPLGIDFGV-----EGL 589

Query: 408 SPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440
           +  G  R    M    +    +  MDGFF   L++
Sbjct: 590 TRFGVQRYHSSMKLTRRFYPHTHNMDGFFVAKLQK 624


>gi|221069396|ref|ZP_03545501.1| sun protein [Comamonas testosteroni KF-1]
 gi|220714419|gb|EED69787.1| sun protein [Comamonas testosteroni KF-1]
          Length = 461

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 113/459 (24%), Positives = 176/459 (38%), Gaps = 54/459 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +  L  ++    S   +L           + QR +  V+A++   LR L R  A+   
Sbjct: 29  AVAKALHGIL-GGQSSKAVLAQ---------VPQRLRPGVQALLFQVLRNLGRAQALQRQ 78

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           ++  +   K  +L                  + +V+ AVE AK +   R  +  +N+ LR
Sbjct: 79  LVSRAPAPKVSALLSTALALAWDEAQAPYPPFTLVNQAVEAAK-NGAARAQSGFINACLR 137

Query: 130 RVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           R  RE+             +   P W+  RL+  + ++    I  A  +   + L V   
Sbjct: 138 RFLRERDALVSATDNDPVAVWNHPAWWIARLKKDHPQDW-QTILAANNAQPPMTLRVNAQ 196

Query: 186 IETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             T A   +A+                 E    +  LP F EG   VQDA+A     L  
Sbjct: 197 KSTAAQYQDALQAMGLKATAVAECGLQLEQAVPVQELPHFDEGWTSVQDAAAQAAAPLLL 256

Query: 239 TLNNL------SVLDLCAAPGGKTAQLIVSGAK----VTALDVSKRRLEKLRCNLDRLHL 288
                       VLD CAAPGGKTA LI         VTAL++   R  ++   L RL L
Sbjct: 257 AGLPQPQGRPLRVLDACAAPGGKTAHLIERAVPGSIEVTALEIDPERARRIDETLSRLGL 316

Query: 289 YA-EDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
            A   + +  A     +     + FDA+L+DAPC+++G +RR PDV W R   D+ + A 
Sbjct: 317 KAKVLVADASAPKDWFESQCGAQPFDAILLDAPCTASGIVRRQPDVRWLRRESDVAQLAD 376

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +LL      ++PGG +V+  CS+ K + +  +Q  L  +     L            
Sbjct: 377 IQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAA 436

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              ++S                      DGFF   L +L
Sbjct: 437 KHDSVSDN---------------PLGDHDGFFYALLEKL 460


>gi|316967738|gb|EFV52125.1| putative RNA methyltransferase NOL1 [Trichinella spiralis]
          Length = 472

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 141/338 (41%), Gaps = 30/338 (8%)

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
            N+ L+  S    +L + +       E+  E+L + +    +L    A  S   + +   
Sbjct: 110 TNASLKSRSYYVQKLKKYLCSFYGYNEFIMEKLIHIFKINELLEFLQANESQRPLVIRCN 169

Query: 184 F---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASI 232
                 +  A  L +  +    +                I + P +  G + +Q AS+ +
Sbjct: 170 TLKIRRKDLAQSLTSRGVNLQPLGKWSKVGLVVYGSQVPIGATPEYMCGFYILQGASSFM 229

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           PV       +  +LDLCAAPGGK++    ++ +   + A DVS+ R + +  N  RL + 
Sbjct: 230 PVLALDPQEDEKILDLCAAPGGKSSYISAMMKNTGILIANDVSRDRCKAITSNFHRLGVR 289

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              +  +D   +     FD VL+DAPCS +G I +   V  +++  DI + A  Q++L+L
Sbjct: 290 NAMVTCLDGRHFKQIL-FDRVLLDAPCSGSGVISKDVSVKVSKNLLDIQRCATLQKELIL 348

Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSID 402
             I  +      G I+V+S CS+  +++E V+   LR   + +    L      + +  +
Sbjct: 349 AAIDRLDARSPKGSILVYSTCSIFVEENEAVIDYALRKRNVKLVDTGLPFGIEGFVRFRE 408

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                + +   R  P            MDGFF   L++
Sbjct: 409 YRFHPTMKYCRRFYPH--------KHNMDGFFVAKLKK 438


>gi|330790279|ref|XP_003283225.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum]
 gi|325086906|gb|EGC40289.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum]
          Length = 672

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 136/331 (41%), Gaps = 27/331 (8%)

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
                   L + I        W  +     +     L   +A  +   + +         
Sbjct: 237 SRQVYMDRLKEDICTYFGYSSWLVDVFLKIFNAAEALEFFEANETHRPLTIRANTLKTRR 296

Query: 187 ETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           +  A  L A  +    I+       + +   +I + P +  G +  Q AS+ +PV     
Sbjct: 297 KDLAEALIARGVHLEPIKWSQVGLTIYDTQVAIGATPEYLAGQYIQQSASSFLPVLALAP 356

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
             N  VLD+CA+PGGKT     ++ +   + A DV+K R++ L  N+ RL +    +  M
Sbjct: 357 QPNERVLDMCASPGGKTTYIAAMMKNTGTLVANDVNKERIKSLVANIHRLGVKNCVVSNM 416

Query: 297 DAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
           D  +Y      FD VLVDAPC   G I + P +  ++   D++     Q++LLL+ I  V
Sbjct: 417 DGREYPSVLAGFDRVLVDAPCVGLGVISKDPQIKISKSEQDVITCTHTQKELLLRAIDAV 476

Query: 356 ----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
                 GGI+V+S CSL  +++E VV   LR+  + +    +            +     
Sbjct: 477 DANSATGGIIVYSTCSLTVEENEAVVDYALRNRDVIIVDTTIEFGVDGFTSFRES----- 531

Query: 412 WIRITPD--MLEKIDGVSSGMDGFFAVALRR 440
             R  P   + ++    +  MDGF+   L++
Sbjct: 532 --RFHPSLALTKRYYPHTHNMDGFYVAKLKK 560


>gi|126340043|ref|XP_001369382.1| PREDICTED: similar to nucleolar protein 1, 120kDa [Monodelphis
           domestica]
          Length = 727

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   ++ + +    ++   +A   P  I L            A  L    + 
Sbjct: 281 ATYYSYGDFLIGKIMDIFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 340

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 341 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYILQGASSMLPVIALAPQEHERILDMCCA 400

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +    I   D   +      F
Sbjct: 401 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHDDGRHFPKVVGGF 460

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI + A  Q++LLL  I  V    K GG +V+
Sbjct: 461 DRVLLDAPCSGTGVISKDPSVKTNKDDKDIKRCAHIQKELLLSAIDSVNAASKTGGYIVY 520

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV+  L+     V LVP    + +        +     R  P +    
Sbjct: 521 CTCSITVEENEWVVEYALKKR--NVRLVPTGLDFGQ-----EGFTHFRERRFHPTLRSTR 573

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF    ++
Sbjct: 574 RFYPHTHNMDGFFIAKFKK 592


>gi|319761189|ref|YP_004125126.1| sun protein [Alicycliphilus denitrificans BC]
 gi|330823049|ref|YP_004386352.1| sun protein [Alicycliphilus denitrificans K601]
 gi|317115750|gb|ADU98238.1| sun protein [Alicycliphilus denitrificans BC]
 gi|329308421|gb|AEB82836.1| sun protein [Alicycliphilus denitrificans K601]
          Length = 455

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/461 (25%), Positives = 189/461 (40%), Gaps = 44/461 (9%)

Query: 10  VSSHLLSCVMRKRISLTCLLDL-EYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +S  LS ++    S    +   + G +A        +  V+A++   LR L R  A+  
Sbjct: 11  AASAALSRLLDATASALQAIRAGQSGTAALAATDAALRPAVQALLFQVLRNLGRAQALRR 70

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +     P +  +L         +        + +V+ AVE AKR       A  +N+ L
Sbjct: 71  LLAPRKPPPRVDALLCTALALAWEPESAPYEPFTLVNQAVEAAKRSPARHGSAAFINACL 130

Query: 129 RRVSREKI----ELLQRIAGISIIPEWFKERLE-NFYGKERVLAISDACISPLYIDLTVK 183
           RR  RE+             +   P W+ +RL  +     + +  ++   +P+ + +  +
Sbjct: 131 RRFLREREGLVAATQGDETAVWNHPAWWIQRLRRDHPQCWQQILQANNAPAPMVLRVARQ 190

Query: 184 FDIETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--- 235
                   K  A +        G   +   P  +  LPGF EGV  VQDA+A +      
Sbjct: 191 KSTSALYQKALAAINIESTAVGGWGVVLARPVPVQRLPGFDEGVVSVQDAAAQMAAPLLL 250

Query: 236 -LFGTLNNLSVLDLCAAPGGKTAQLIVSG------AKVTALDVSKRRLEKLRCNLDRLHL 288
                  +L +LD CAAPGGKTA L+          +VTAL+V   R E++  NL RL L
Sbjct: 251 DGLDAGKSLRLLDACAAPGGKTAHLLEWAAALQAPWQVTALEVDVVRAERIHDNLRRLGL 310

Query: 289 YAEDIIEMD-------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            A  ++  D              + FDA+L+DAPC+++G +RRHPDV W R   D+ + A
Sbjct: 311 SA-QVLVADAGRPEAWWQQASGGEPFDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLA 369

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL      +KPGG +++  CS+ + + +  +Q  L  +     L      +  S 
Sbjct: 370 ALQARLLAALWPLLKPGGRMLYCTCSVFRAEGDAQIQAFLAHNTDARLLPSAGHLFPGSP 429

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           D   AL   G                   DGFF   L++  
Sbjct: 430 DKHGALRDNG---------------PGEHDGFFYALLQKAA 455


>gi|167540287|ref|XP_001741734.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893617|gb|EDR21802.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 505

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 25/320 (7%)

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKL--- 193
           Q +       E+  + + + +G +  +   +A  +P  + + V          A KL   
Sbjct: 186 QDMQTYYSCNEFLAKLVVDLFGPKGAVDFMEANEAPRPVTIRVNTLKSRRRELAQKLINR 245

Query: 194 ----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
               + +     G+ + +    I + P +  G + +Q +S+ + V       N  +LD+C
Sbjct: 246 GVNVDMIEWSKSGLVVYDSQVPIGATPEYLAGQYILQSSSSWVSVIALAPQPNEKILDMC 305

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KK 305
           AAPGGKT  +   +     + A D+SK RL+ +  N+ RL +    I   D  ++     
Sbjct: 306 AAPGGKTTHIAALMKDTGILVANDISKDRLKAVIGNVHRLGITNTIITNYDGHEFPKVMG 365

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIV 361
            FD VLVDAPC+  G I R   V  ++   DI      Q++L+L  I  V P    GG V
Sbjct: 366 QFDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNPKSKTGGYV 425

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--M 419
           V+S CS+  +++E V+   L+   + V  + L     +   +          R  P   M
Sbjct: 426 VYSTCSITVEENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQ-----YRFHPSVKM 480

Query: 420 LEKIDGVSSGMDGFFAVALR 439
            ++       MDGFF   L+
Sbjct: 481 AKRFFPHIQNMDGFFVCKLK 500


>gi|108763815|ref|YP_630153.1| RsmB/NOP family methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467695|gb|ABF92880.1| methyltransferase, RsmB/NOP family [Myxococcus xanthus DK 1622]
          Length = 427

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 92/446 (20%), Positives = 164/446 (36%), Gaps = 62/446 (13%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           V++  ++ V+    +   +LD    D     L++  ++ ++  V     +  R+  +L  
Sbjct: 30  VAADAIAQVLA-GSAAERVLDRTLRDRR--SLTREQRLALKEAVFNVGLWRRRLGFLLGR 86

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
              + L      L   L   +A      V        +   A                  
Sbjct: 87  EDAAPL-----FLLHALMHGLA-----GVPAV----ESAALAGLGDG------------- 119

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDI 186
                       +A  + +P+W  +     +G E           P  I L         
Sbjct: 120 APPPLVSAPPPTLALRASLPDWLADHFAREFGPE-ADDFCAHLNVPGPITLRANVLRTSR 178

Query: 187 ETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           E  A +L +              + ++    ++  L    EG++ VQD  + +   L   
Sbjct: 179 EALAERLRSEGVETRPGPWSPLALHIEGPRPNLYGLRSLQEGLFEVQDEGSQLLGLLVEA 238

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
               +VLDLCA  GGKT Q    +    ++ A D    RL++L     R HL    ++  
Sbjct: 239 RPGETVLDLCAGAGGKTLQLGADMKDSGRLLAYDPDPERLDRLLQRSSRAHLTRVQVL-- 296

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS  G++RR PD  +    + + +    Q+ +L +G   V+
Sbjct: 297 --RSLPESLDADRVLVDAPCSELGSLRRGPDQRFRIQPEVLTRFPALQQDILQRGARLVR 354

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V++ C++++ ++E+VV   L S P    + P       +  ++ A   +G++ + 
Sbjct: 355 PGGRLVYATCTVNRAENEDVVAAFLASRPDFRLVRP------GAGWLSDACLRDGFLFVA 408

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P           G D FFA  L R  
Sbjct: 409 PH--------RHGTDAFFAAVLERTA 426


>gi|291235462|ref|XP_002737664.1| PREDICTED: NOP2 protein-like [Saccoglossus kowalevskii]
          Length = 628

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 30/321 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   ++   +    ++   +A      I +            A  L    + 
Sbjct: 278 ASYYSYNDYLIGKIVELFAITELIEFLEANEVQRPITIRTNTLKTRRRDLAQALINRGVN 337

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       N  +LD+CAA
Sbjct: 338 LDPVGKWSKVGLVIYESSVPIGATPEYLAGHYMMQGASSFLPVMALAPQENERILDMCAA 397

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT+ +   + +   + A D +K R++ +  N+ R+ +    I   D   +      F
Sbjct: 398 PGGKTSYIASLMKNTGMLFANDANKERVKSIVGNIHRMGITNTVICNEDGRSFPKVIGNF 457

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TG I + P V   +D  D+ +    Q++LLL  I  V    K GG +V+
Sbjct: 458 DRVLLDAPCTGTGVISKDPSVKTNKDMLDVQRIVTIQKELLLSAIDSVDAKSKTGGYIVY 517

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           S CS+   ++E V+   L+   + +    L      + +  +     + E   R  P   
Sbjct: 518 STCSILVDENEWVIDYALKKRNVKLVSAGLDFGRPGFKRFRERRFHPTLEKTRRFYPH-- 575

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                 +  MDGFF   L+++
Sbjct: 576 ------THNMDGFFVAKLKKM 590


>gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 308

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 136/312 (43%), Gaps = 34/312 (10%)

Query: 141 RIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLT-VKFDIETWAHKLNAVML 198
             AG    P W  + L+  Y  +   +  ++   +P+++ +     + + +   L+A  +
Sbjct: 18  HDAGKYGHPSWLLKLLKQAYPNDVDAICAANNTKAPMWLRVNRQHHNRDEYRKLLDAEGI 77

Query: 199 PTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
            T              P  +  LPGF +G   VQDA+A + ++         +LD CAAP
Sbjct: 78  ATELHPQAGDALRLLSPCDVYKLPGFEQGWVSVQDAAAQLAIEYLQPQAGELILDCCAAP 137

Query: 253 GGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFD 308
           GGKTA     V  A+V A+D  + RL ++  NL RL+L A            +     FD
Sbjct: 138 GGKTAHILEHVPSAQVVAIDCDEHRLARVHDNLQRLNLQAKVLCADARYPEKWWDGDKFD 197

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L+DAPCS+TG IRRHPD+ W R  +DI   A  Q ++       +K GG +V++ CS+
Sbjct: 198 RILLDAPCSATGVIRRHPDIKWLRRGEDIAALAQLQAEIFDAMWLQLKSGGTLVYATCSI 257

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
             Q++ + V   L  +                  +  + +     +I P           
Sbjct: 258 TPQENRDQVSAFLTRTADA--------------TLVGSEATNPGRQILPG--------EE 295

Query: 429 GMDGFFAVALRR 440
            MDGF+   L++
Sbjct: 296 NMDGFYYAVLQK 307


>gi|224061242|ref|XP_002300386.1| predicted protein [Populus trichocarpa]
 gi|222847644|gb|EEE85191.1| predicted protein [Populus trichocarpa]
          Length = 476

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 30/338 (8%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
                     +L   +       E+    L   +    ++ + +A   P    L      
Sbjct: 52  EGSSRKDYVHQLKIDLCKYYGYNEFLIGALVEMFPVNELMELIEAFEKPRPTCLRTNTLK 111

Query: 185 -DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQ 235
                 A+ L    +    +                I + P +  G + +Q AS+ +PV 
Sbjct: 112 TRRRDLANVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGHYMLQSASSFMPVM 171

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                    ++D+ AAPGGKT  +   + +   + A ++  +RL  L  NL R+ +    
Sbjct: 172 ALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIYANEIKAQRLRSLTANLHRMGVTNTI 231

Query: 293 IIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
           +   D  +          D VL+DAPCS TG I +   V  ++ ++DI + A  Q++LLL
Sbjct: 232 VCNYDGRELPKTLGLNTVDRVLLDAPCSGTGVISKDESVKISKTSEDIEQCAHLQKQLLL 291

Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
             I  V    K GG +V+S CS+   ++E  V   L+     V+LVP    + +   +  
Sbjct: 292 AAIDMVDANSKSGGYIVYSTCSIMVAENEAAVDYALKKR--NVKLVPCGLDFGRPGFVRF 349

Query: 406 ALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRRL 441
                   R  P +    +       MDGFF   L++L
Sbjct: 350 RQH-----RFHPSLEKTRRFYPHVHNMDGFFVAKLKKL 382


>gi|221201862|ref|ZP_03574899.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD2M]
 gi|221207632|ref|ZP_03580640.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD2]
 gi|221172478|gb|EEE04917.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD2]
 gi|221178282|gb|EEE10692.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD2M]
          Length = 467

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 176/476 (36%), Gaps = 57/476 (11%)

Query: 2   KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
             G  ARL +  +    L             +R+  +L   L   +   A    +   + 
Sbjct: 11  SPGRAARLSALRVAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMASGAQALA-RG 69

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLP--------RKKYSLQQLLRVSVAQILYLDVA 99
             + +   T+R L  +D ++  ++  + P             L      +          
Sbjct: 70  ATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLAGALALLLDADGEAAY-------P 122

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKER 155
            + VVD AV      +E      +VN++LRR  RE+      +            W+ + 
Sbjct: 123 PFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAMHADPVAQWNYRAWWIDA 182

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKEL 208
           ++  +       ++        + L V     +    L                      
Sbjct: 183 VKRAWPDAWQAILAAGDRQGP-LTLRVNARRASVDAYLGTLRDNGIEAAAIGRHAVRLAS 241

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVT 267
              +  +PGFA+GV  VQDA A +  +  G  + + VLD CAAPGGKT  ++  + A+V 
Sbjct: 242 ALPVERIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVV 301

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRR 324
           AL+    R  ++  NL RL L A D+   D      +   + FD +L D PCS++G +RR
Sbjct: 302 ALESDASRATRIGENLARLSL-AADVRVGDAGAPDTWYDGRPFDRILADVPCSASGIVRR 360

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           HPD+ W R   DI      QR++L      +K GG +++  CS+  ++ E+  +    + 
Sbjct: 361 HPDIRWLRREADIPALVAEQRRILSALWPLLKQGGELLYVTCSIFPEEGEQQARWFEAAC 420

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              V L             +     EG           +   ++  DGFF    ++
Sbjct: 421 EDAVRLDA--PGQLLPRAASGGAGSEGT--------AGVPDPTTDHDGFFYARFQK 466


>gi|241765995|ref|ZP_04763917.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
 gi|241364022|gb|EER59271.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
          Length = 404

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 106/418 (25%), Positives = 172/418 (41%), Gaps = 42/418 (10%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109
           ++++   LR L R  A+   ++  + P    +L                  + +V+ AVE
Sbjct: 2   QSLLFHVLRALGRAQALRRKLVSRTPPPPADALLCTALALAWHADDAPYEPFTLVNQAVE 61

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERV 165
            AKR+   +  A  +N+ LRR  RE+                 P+W+  +L+  + +   
Sbjct: 62  AAKRNVATKAQAPFINACLRRFLRERDTLVAATDTDPVARWNHPQWWIAKLQKDHPQHWQ 121

Query: 166 LAISDAC-ISPLYIDLT-----VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
             +      +P+ + +      V    +  A                + P  +  LPGFA
Sbjct: 122 QILHANNGRAPMILRVNGQKSTVAQYQKALAAINIEATPVGEWGLALQHPRPVAELPGFA 181

Query: 220 EGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----KVTALD 270
           +G+  VQDA+A                L VLD CAAPGGKTA L+         +VTAL+
Sbjct: 182 QGLVSVQDAAAQQAAPLLLRGLDLAQPLRVLDACAAPGGKTAHLLEYAGASSPLQVTALE 241

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMD-------AFDYCPKKLFDAVLVDAPCSSTGTIR 323
           V   R  ++   LDRL L A  ++  D          +C    FDA+L+DAPC+++G +R
Sbjct: 242 VDVARSVRIHETLDRLGLRA-QVLVADAARPQEWWQPHCEGIPFDAILLDAPCTASGIVR 300

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           RHPDV W R   DI + A  Q +LL      ++PGG +++  CS+ +++ +  VQ  L  
Sbjct: 301 RHPDVRWLRREADIAQLAVQQARLLKALWPLLRPGGRLLYCTCSVFREEGDAQVQSFLA- 359

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L+P        I     +  +                    DGFF   L+++
Sbjct: 360 HNTDARLLPSPGHLIPGIANNGEVVRDN--------------APGDHDGFFYALLQKM 403


>gi|291288639|ref|YP_003505455.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885799|gb|ADD69499.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 379

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 104/402 (25%), Positives = 172/402 (42%), Gaps = 54/402 (13%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VAD 100
              +Q L R I   T R L  I+  LD +           L+  L +   QIL++D + D
Sbjct: 28  DSAEQRLYRKIYFETFRHLGFIEKCLDKLYTEMP---GPELRAALALGTCQILFMDDIPD 84

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY 160
           YA V+ +V   + +K        VN++LR V R K E L         PEWF +R E   
Sbjct: 85  YAAVNESVILVQMNKR-----SFVNAVLRNVGRRKEEFLSEYNVREDFPEWFVKRWETKL 139

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
           G E  + ++D    P +  +           +                            
Sbjct: 140 GDELDVFLTDLNQKPSFYGVDTDTMKIDKLEE--------------------------KS 173

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278
              ++ D ++    +L G    +S+LD CAAPGGKT         A++ A++   +R EK
Sbjct: 174 DDHYIMDRASYSVAKLAGECLPMSILDCCAAPGGKTFVLAKTYPDARIFAVEKYYKRFEK 233

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           L+ N+  L L   D I+ D F+   +  FD +++DAPCS+ GTI+RHP+V W R+  DI 
Sbjct: 234 LKENMTELGLGNVDCIKNDIFEMETEAEFDLIMLDAPCSALGTIKRHPEVRWFRNEKDIK 293

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           ++A  Q  +L +   F+  GG +++S CS++ +++ +V+++ +        + P     +
Sbjct: 294 ENARRQFGILKKVSKFLSKGGKIIYSVCSMEDEETVDVIKEFMEWDSSFKLVTPSCDEDF 353

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           K  D                   +     +  DGFF   L +
Sbjct: 354 KDGD-----------------FFRSLPYKNDADGFFGAVLTK 378


>gi|218662910|ref|ZP_03518840.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli IE4771]
          Length = 429

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 151/449 (33%), Gaps = 48/449 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       +++  
Sbjct: 10  AISVLADIDTRKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMND- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++                        A    +++     +++    
Sbjct: 67  -----DSAAAIAHAVM-------------FRQWGFTPDRLATELADDKFAPPPLSADALA 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
               +            IPEW +   E  +G   +     A  +   +DL       +  
Sbjct: 109 AFASRSLDDAPPHIRGDIPEWIQPSFEQAFGAAWLTEA-QALAARPTLDLRANILKASRD 167

Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237
             + A+                           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
              +   +LD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 LAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +            D VLVDAPC+ TGT RR PD  W     ++ +    Q+  L Q   F
Sbjct: 288 DDARGLSGLAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPEGW 412
           VKPGG +++  CS+  Q++EE V++    +     V  +P   A +         S    
Sbjct: 348 VKPGGELIYVTCSVLPQENEEQVRRFTAGNTDFQIVSALPAWDALFGKEAPRPHSSDAQT 407

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + +TP         S+  DGFF   ++R 
Sbjct: 408 VTLTP--------ASTDTDGFFFCRMQRK 428


>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040311|gb|ACT57107.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 429

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 160/450 (35%), Gaps = 48/450 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +  +L  +   +  +T  L        F      D+  +  IV+  LR       ++D
Sbjct: 8   AAAIEILKDIRTHKKPITNSLKDWGMSHRFAG--SSDRASISNIVHDVLRKYLSSAYIMD 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                     +  +  ++      +   D+    ++ +  E       +     L    +
Sbjct: 66  S------DDPESLVYAVI------MKDWDIPWEKMLSMLKE-------DLFSPPLPKESV 106

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
            +    +      +     IP+W +      Y K+  L  + +      +DL        
Sbjct: 107 IKSFHSRQLENAPLHIQGNIPQWLQSSF-QSYFKDTWLKEAKSLSMRAPLDLRTNTLKVN 165

Query: 189 WAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQ 235
                  +                           ++++   F  G + +QD  + I   
Sbjct: 166 RCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSN 225

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L    N+  +LD CA  GGKT   + L+ +  ++ A D +K R+  +   + R  ++   
Sbjct: 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +          ++ F  VLVDAPCS TGT RR PD+ W     ++++    Q+K+L +  
Sbjct: 286 LHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA 345

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPE 410
            FV+P G +V+  CS+  +++ + +   L  +P      ++   +  +   +        
Sbjct: 346 QFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIEN 405

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G   +TP          +  DGFF   L+R
Sbjct: 406 GCCVLTP--------FLTNTDGFFFCRLKR 427


>gi|257784669|ref|YP_003179886.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469]
 gi|257473176|gb|ACV51295.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469]
          Length = 463

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 93/480 (19%), Positives = 178/480 (37%), Gaps = 56/480 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-FRLLSQRDQILVRAIVNVTLRF 59
           M +   AR V+        R        +     +S  F  LS +D+     +       
Sbjct: 1   MATLTPARKVAYQAFFECRRN----NLCVRDYLRESKDFSELSAQDKAFATRLALGATLT 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ++D  L   L S +   +  +Q   R++V ++LYL+    A +   VE  K    ++ 
Sbjct: 57  KGKLDEALKNHLKSGIH-LEPKVQDAFRIAVFEVLYLETRRDAAISQGVELVKSV--SKR 113

Query: 120 FAKLVNSILRRVSRE--------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            + L N++LR++S                 ++  S IPEW    +    GK     +   
Sbjct: 114 SSGLANAVLRKISEHEANLARAKDPHTPSELSWASGIPEWICLEIIESLGKSAAQRLILN 173

Query: 172 CISPLYIDLTVKFDIETWAH----KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
             +P  + +  +   E        +L   +LP           ++ +     +      D
Sbjct: 174 LKNPAPVYVLQRNLSEQQLQNGSLELQKTLLPDVYEVKNPAQLNVGA--YVKKVQLVPAD 231

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGK-------TAQLIVSGAKVTALDV----SKRRL 276
            ++ +   L  +  + ++L++    G K          L      +TA+++    S    
Sbjct: 232 LASQLVAFLAASYVHQNILEIGQGRGTKSLLLSHAFEVLDKKNTYITAVELLKGKSHISK 291

Query: 277 EKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            +++    R  + +                  + FD V +DAPCS  GT+RRHP++ W  
Sbjct: 292 RRMKAAGLRDQVTSLMFDATQFASPEIPEELNQNFDVVFIDAPCSGLGTLRRHPEIAWNL 351

Query: 333 DT---DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PV 388
                 D  +    Q KLL    S V+ GG ++++ CSL   ++++VV+  L SS     
Sbjct: 352 SANSLYDGGELTVLQTKLLRSCSSRVEVGGYLIYATCSLSNSENQQVVEDFLASSEGFDF 411

Query: 389 ELVPLNSAYWKSIDMAMA-------LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           E+  L+    ++  +  A       ++PEG+++            S+  D  F    +R 
Sbjct: 412 EVQDLHECPARTNLIPEAQEFLDTCITPEGFLQT--------AFASADCDAHFMAVFKRK 463


>gi|121609061|ref|YP_996868.1| Fmu (Sun) domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553701|gb|ABM57850.1| Fmu (Sun) domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 423

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 95/451 (21%), Positives = 142/451 (31%), Gaps = 57/451 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             + L+   +R       ++   + D     L  R++  +   V   LR     + +   
Sbjct: 9   ACAELVRLTLRLEHPADAVVSRFFRDHR--GLGPRERATLAETVYTVLRKKLLFEHMA-- 64

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                        + L  +                      A                  
Sbjct: 65  -----PSGSGSRERCLAILG--------------------FAGTRDFLHGALTGQEKDWL 99

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENF-YGKERVLAISDACISPLYIDLTVKFDIET 188
                             +PEW    L+         L  S A  +PL + +    D   
Sbjct: 100 AQCDAVRPEDLPERHRHHLPEWLVPPLKAQLGAGFWPLVASLAQAAPLDLRVNTLKDKRA 159

Query: 189 WAHKLNA-------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              K  A           +      +   ++  L  F  G   VQD  + +   L     
Sbjct: 160 VVQKELAQAGIQARATPYSPWGLRIDGKPALARLEVFTRGAIEVQDEGSQLLALLLDAKR 219

Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294
              VLDLCA  GGK       + S  ++ A DVS  RL+ L+  L R  L          
Sbjct: 220 GEMVLDLCAGAGGKTLAIGACMRSTGRLYAFDVSAHRLDALKPRLARSGLSNVHPAAIAH 279

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E D          D VLVDAPCS  GT+RR+PD+ W +    + + A  Q  +L      
Sbjct: 280 ERDERIGRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSDRTVQELAARQSAILHSAARL 339

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG--- 411
            KPGG +V++ CSL  Q++E V      + P    L          +  A  L   G   
Sbjct: 340 PKPGGRLVYATCSLLAQENEAVAAAFGAAHPDFEPLDAGALLERLKVAGAKGLCSGGASG 399

Query: 412 --WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++R+ P +           DGFFA   RR
Sbjct: 400 SAYLRLWPHL--------HQTDGFFAAIWRR 422


>gi|238028941|ref|YP_002913172.1| Sun protein [Burkholderia glumae BGR1]
 gi|237878135|gb|ACR30468.1| Sun protein [Burkholderia glumae BGR1]
          Length = 483

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 98/413 (23%), Positives = 166/413 (40%), Gaps = 33/413 (7%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV----SVAQILYLDVADY 101
           +  ++ I   T+R L   D ++  ++  + P    +L          + A+  Y     +
Sbjct: 85  RGAIQDIAYRTMRRLGTSDWLIGTLVGKAPPEHVRALLACAFALLVDAPAEAAYT---PF 141

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLE 157
            VVD  V      +E      LVN++LRR  RE+     +             W+ E LE
Sbjct: 142 TVVDQTVSAIGARREFAFAKGLVNAVLRRFLRERETLVAQAQADRVARWNYRPWWIEALE 201

Query: 158 NFYGKERVLAISDACISPL-YIDLT-----VKFDIETWAHKLNAVMLPTGGIRLKELPES 211
             +  +    ++   ++    + +      V   + T   +                P  
Sbjct: 202 RAWPDDWQAILAAGDLAGPLTLRVNARQASVAAYLATLREQGIDAAAAGRYAVRLAAPLP 261

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALD 270
           +  +PGFA+G+  VQDA A +  +  G  + + VLD CAAPGGKT  L+  +  +V AL+
Sbjct: 262 VERIPGFADGMVSVQDAGAQLAAEWLGATDGMRVLDACAAPGGKTGHLLELADLEVVALE 321

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
               R  ++  NL RL L A ++   D      +   + FD +L D PCS++G +RRHPD
Sbjct: 322 SDASRATRIGENLARLKL-AAEVRVGDAGAPEGWHDGRPFDRILADVPCSASGIVRRHPD 380

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W R   DI      QR++L      +KPGG +++  CS+  ++ E   +    +    
Sbjct: 381 IRWLRRETDIAALVAEQRRILQALWPLLKPGGELLYVTCSVFPEEGEAQARWFEGAVQDA 440

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           V L        ++    +           P   E         DGFF    ++
Sbjct: 441 VRLDAPGQLLPRAAAGRLP---------YPGHDEAARQADH--DGFFYARFQK 482


>gi|162456172|ref|YP_001618539.1| Sun protein [Sorangium cellulosum 'So ce 56']
 gi|161166754|emb|CAN98059.1| Sun protein [Sorangium cellulosum 'So ce 56']
          Length = 496

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 161/475 (33%), Gaps = 59/475 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           V++ +L+ V       +  LD E   +    L  RD  L   +V   LR    ++A +  
Sbjct: 33  VAARVLARVWGSDAFASAALDAELRRAP--ALDPRDIGLATELVYGVLRAQAALEARIAE 90

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR--HFAKLVNS 126
               S       ++  + +    + +LD V  +A V  AV+ A+     R   FA  V  
Sbjct: 91  FAAKSRWTADPLVRAHVLMGAYSLCFLDRVPSFAAVSEAVDGAQAAGGPRVGAFANAVLR 150

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKF 184
            L              A ++  P W +  L    G+    A   A   P    + L    
Sbjct: 151 RLAAAVESGGRPPLASAVVASAPGWLRGALRRSLGRAAAEAFLSAGPVPPPTGLCLAPGE 210

Query: 185 DIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           D   W   L A            +    +      +  LPGF       Q+  A      
Sbjct: 211 DRGAWLEALRAAAPTATFEAGHVSPAAIVARGAGDLRRLPGFGAAWI-GQEEGAQALAFA 269

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL------------- 283
            G     +VLD C+  G K+  L  +     A+D +     KL                 
Sbjct: 270 LGARPGEAVLDACSGRGNKSWLLSRAVLPSGAVDAADLYPAKLSQLRAALGAPPASAEGA 329

Query: 284 ---------------DRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326
                           R      +   +D           +D VLVDAPCS  GT+RR P
Sbjct: 330 GAEAGDAQAGARDGLGRAAASVRETYAVDWTVGAGDVPEGYDRVLVDAPCSGVGTLRRRP 389

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           ++   R+ DD+ + A  Q  +  +  +  + GG +VF+ CS+ +++ E V  ++   +  
Sbjct: 390 EIALRREADDLPRLADLQVAIARRAATRARDGGRLVFAVCSVLREECEAVAARLAAPADD 449

Query: 387 P--VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
              V L P       + ++A         R+ P +         G DG+FA    
Sbjct: 450 DLGVRLEPAPFDAELARELAGGGDA---FRLLPHV--------HGTDGYFAAMFV 493


>gi|114562387|ref|YP_749900.1| Fmu (Sun) domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333680|gb|ABI71062.1| Fmu (Sun) domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 458

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 158/456 (34%), Gaps = 62/456 (13%)

Query: 12  SHLLS-CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L   VM   +    ++   + +        +D+ ++R  +    R+   ++ +    
Sbjct: 39  IETLFNQVMSTNMPADRIIGQYFREHKKHG--SKDRRVIRESLFGLFRWWGWLNQL---- 92

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL------- 123
             +S  +     QQL   ++ +                + A    +   + +        
Sbjct: 93  --NSSQKHTTWFQQLSTCAMLEQ-----------HEWNDVATAWNDFASWPQTRPDQVEL 139

Query: 124 -VNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             N+ L       + +          ++P+WF +        +  +  + +   P++   
Sbjct: 140 INNASLNDKLTAFMTVSGIDTCQLTQLLPQWFWQLCPIDDVDQYAVVNAMSSRPPIWARA 199

Query: 181 T------VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
                  V   +     +  A    +  I L     ++  +  + +G   +QD ++ +  
Sbjct: 200 QTLSTEKVIKSLGQAGIEAKANSYFSDAINLGHKSINLNEVNVYKQGYLEIQDLASQVIG 259

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRL 286
           Q+    N+    D C+  GGKT QL     +          A D+  + LE+LR    R 
Sbjct: 260 QICQPNNHDKWWDACSGAGGKTLQLYSLMLQQGSALTGSIIASDIRTKPLEELRKRAKRA 319

Query: 287 HLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                 +              FD VLVDAPCS TGT RR+PD+ W  D   +      Q 
Sbjct: 320 GFDNISVAPWKGDVLPVDANAFDGVLVDAPCSCTGTWRRNPDMRWLDDASAVTDKPMLQL 379

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L +    VK GG +V++ CSL   ++E++V+  L  +    EL P+   +   +    
Sbjct: 380 AILRRSAVAVKSGGKLVYATCSLSPSENEQIVKDFLSET-AEFELEPVTHPFTGQLCD-- 436

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  + I P             DG F   +RR 
Sbjct: 437 ------MLTIWPQQA--------NSDGMFVAKMRRK 458


>gi|115668627|ref|XP_787141.2| PREDICTED: similar to Im:6893299 protein [Strongylocentrotus
           purpuratus]
 gi|115941222|ref|XP_001192218.1| PREDICTED: similar to Im:6893299 protein [Strongylocentrotus
           purpuratus]
          Length = 1076

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 154/404 (38%), Gaps = 37/404 (9%)

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN-- 125
              L   + R K   +  L++S++Q     +     ++      +    ++   +++   
Sbjct: 468 SKKLDKKIKRDKKLAEDELQISISQTETFQLPSGEEIEKEDILLQHHMVHQRIKEVMEVL 527

Query: 126 -------SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                     R        L Q +       E+   ++ + +    ++   +A      +
Sbjct: 528 GDFKNRREEDRSRQEYVTMLRQDLMTYYSYNEFLITKIMDLFPLSELIEFLEANEVARPV 587

Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQD 227
            +            A  L    +    +                + + P +  G + +Q 
Sbjct: 588 TIRTNSLKTRRRDLAQALINRGVNLDPVGKWTKVGLVIYDSAVPVGATPEYMAGHYVLQG 647

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
           AS+ +PV          +LD+CA+PG KT  +   + +   + A D +K+R+  L  NL 
Sbjct: 648 ASSFLPVMALAPHEGEKILDMCASPGSKTTYIAALMKNTGMLFANDANKKRVSALVGNLH 707

Query: 285 RLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           R  +    I   D   +      FD VL+DAPCS TG I +   V  ++D  DI + +  
Sbjct: 708 RCGITNTVICNEDGKSFPKVMGGFDRVLLDAPCSGTGVIAKDTAVKLSKDEGDIQRCSHL 767

Query: 344 QRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
           Q++L+L  I  +    K GG +V+S CS+  +++E VV   L+     V LVP    + +
Sbjct: 768 QKELILAAIDSIDANSKTGGYLVYSTCSIMVEENEWVVDYALKKR--NVRLVPTGIDFGQ 825

Query: 400 SIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
                   S        P   +  +I   +  MDGF+   L++L
Sbjct: 826 -----DGFSRFKARHFHPSLKLSRRIYPHTHNMDGFYFAKLKKL 864


>gi|67479223|ref|XP_654993.1| Proliferating-cell nucleolar antigen p120 [Entamoeba histolytica
           HM-1:IMSS]
 gi|56472094|gb|EAL49607.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 495

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 135/320 (42%), Gaps = 25/320 (7%)

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKL--- 193
           Q +       E+    + + +G +  +   +A  +P  + + V          A KL   
Sbjct: 176 QDMQTYYSCNEFLATLVVDLFGPKGAVDFMEANEAPRPVTIRVNTLKSRRRELAQKLINR 235

Query: 194 ----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
               + +     G+ + +    I + P +  G + +Q +S+ + V       N  +LD+C
Sbjct: 236 GVNVDMIEWSKSGLVVYDSQVPIGATPEYLAGQYILQSSSSWVSVIALAPQPNEKILDMC 295

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KK 305
           AAPGGKT  +   +     + A D+SK RL+ +  N+ RL +    I   D  ++     
Sbjct: 296 AAPGGKTTHIAALMKDTGVLVANDISKDRLKAVIGNVHRLGITNTIITNCDGHEFPKVMG 355

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIV 361
            FD VLVDAPC+  G I R   V  ++   DI      Q++L+L  I  V P    GG V
Sbjct: 356 QFDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNPKSKTGGYV 415

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--M 419
           V+S CS+  +++E V+   L+   + V  + L     +   +          R  P   M
Sbjct: 416 VYSTCSITVEENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQ-----YRFHPSVKM 470

Query: 420 LEKIDGVSSGMDGFFAVALR 439
            ++       MDGFF   L+
Sbjct: 471 AKRFFPHIQNMDGFFVCKLK 490


>gi|170585061|ref|XP_001897306.1| NOL1/NOP2/sun family putative RNA methylase containing protein
           [Brugia malayi]
 gi|158595285|gb|EDP33851.1| NOL1/NOP2/sun family putative RNA methylase containing protein
           [Brugia malayi]
          Length = 739

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 130/326 (39%), Gaps = 30/326 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
                  E+  ++  + +     L             +     ++T   +L   ++  G 
Sbjct: 288 CSYYGYNEYLIQKFMSIFPNGTELLEFLEANEQPRPVIIRSNSLKTRRAELARNLINRGM 347

Query: 203 I------------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                         + +    + + P +  G + +Q  S+ +PV         ++LD+C+
Sbjct: 348 NVDPAAEWTKIGLIVYDSQVPVGATPEYLAGHYMLQGLSSFLPVMALAPRPEETILDVCS 407

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL- 306
           APGGK++ +   + +   + A D + +R   +  NL RL +    +  +D  ++      
Sbjct: 408 APGGKSSHIAALMKNTGVLYANDANMQRCRAVIGNLHRLGVNNAVVSNLDGREFAKIMPQ 467

Query: 307 -FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIV 361
            FD VL+DAPCS TG I +   V   RD+ D+ +    QR+L+L  +  +    K GG +
Sbjct: 468 GFDRVLLDAPCSGTGVIWKDGSVKTRRDSQDVQRCHTLQRELILAALDSINANSKTGGYL 527

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DM 419
           V+S CS+  +++E VV   LR     +  + L+             +     R  P   +
Sbjct: 528 VYSTCSVLVEENEAVVDYALRKRDCKLVPMGLDVGV-------QGFTKFREYRFHPSLCL 580

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQPK 445
             +       +DGFF    ++L   K
Sbjct: 581 TRRYYPHVHNIDGFFVAKFKKLSNSK 606


>gi|120537962|gb|AAI29564.1| LOC100036868 protein [Xenopus laevis]
          Length = 744

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++  E L + +    ++   +AC     I +            A  L      
Sbjct: 301 ATYYSYGDYMIETLSDLFPVSELVDFLEACEVHRPITIRTNTLKTRRRDLAQALINRSVN 360

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       N  VLD+C A
Sbjct: 361 LDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCA 420

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307
           PGGKT+ +   + +   V A D++  RL  +  NL RL +    I   D          F
Sbjct: 421 PGGKTSYIAQLMKNTGSVVANDMNAERLRSVVGNLHRLGVTNCIISNYDGRQISKILGGF 480

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +   DI + A  Q++L+L  I  +    + GG +V+
Sbjct: 481 DRVLLDAPCSGTGIISKDPAVKTNKSVQDIQRCAHIQKELVLSAIDALDAQSQTGGFLVY 540

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V+LVP    + K              R  P +    
Sbjct: 541 CTCSITVEENECVVDYALKKR--NVKLVPTGLDFGK-----EGFVRFKERRFHPSLRQTR 593

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF   LR+
Sbjct: 594 RFYPHTHNMDGFFIAKLRK 612


>gi|115528363|gb|AAI24994.1| LOC100036868 protein [Xenopus laevis]
          Length = 729

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++  E L + +    ++   +AC     I +            A  L      
Sbjct: 287 ATYYSYGDYMIETLSDLFPVSELVDFLEACEVHRPITIRTNTLKTRRRDLAQALINRSVN 346

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       N  VLD+C A
Sbjct: 347 LDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCA 406

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307
           PGGKT+ +   + +   V A D++  RL  +  NL RL +    I   D          F
Sbjct: 407 PGGKTSYIAQLMKNTGSVVANDMNAERLRSVVGNLHRLGVTNCIISNYDGRQISKILGGF 466

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +   DI + A  Q++L+L  I  +    + GG +V+
Sbjct: 467 DRVLLDAPCSGTGIISKDPAVKTNKSVQDIQRCAHIQKELVLSAIDALDAQSQTGGFLVY 526

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V+LVP    + K              R  P +    
Sbjct: 527 CTCSITVEENECVVDYALKKR--NVKLVPTGLDFGK-----EGFVRFKERRFHPSLRQTR 579

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF   LR+
Sbjct: 580 RFYPHTHNMDGFFIAKLRK 598


>gi|312086545|ref|XP_003145118.1| nucleolar protein [Loa loa]
 gi|307759717|gb|EFO18951.1| nucleolar protein [Loa loa]
          Length = 692

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 129/326 (39%), Gaps = 30/326 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
                  E+  ++    +     L             +     ++T   +L   ++  G 
Sbjct: 245 CSYYGYNEYLIQKFMGIFPNGTELLEFLEANEQPRPVIIRSNSLKTRRAELARNLINRGM 304

Query: 203 I------------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                         + +    + + P +  G + +Q  S+ +PV         ++LD+C+
Sbjct: 305 NVDPAAEWTKVGLIVYDSQVPVGATPEYLAGHYMLQGLSSFLPVMALAPQPEETILDVCS 364

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL- 306
           APGGK++ +   + +   + A D + +R   +  NL RL +    +  +D  ++      
Sbjct: 365 APGGKSSHIAALMKNTGVLYANDANMQRCRAVIGNLHRLGVNNAVVSNLDGREFAKIMPQ 424

Query: 307 -FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIV 361
            FD VL+DAPCS TG I +   V   RD+ D+ +    QR+L+L  +  +    K GG +
Sbjct: 425 GFDRVLLDAPCSGTGVIWKDESVKTRRDSQDVQRCHTLQRELILAALDSINANSKTGGYL 484

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DM 419
           V+S CS+  +++E VV   LR     +  + L+             +     R  P   +
Sbjct: 485 VYSTCSVLVEENEAVVDYALRKRDCKLVAMGLDIGV-------QGFTKFREYRFHPSLSL 537

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQPK 445
             +       +DGFF    ++L   K
Sbjct: 538 TRRYYPHVHNIDGFFVAKFKKLSNSK 563


>gi|241207260|ref|YP_002978356.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240861150|gb|ACS58817.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 429

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 152/448 (33%), Gaps = 46/448 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++                        A    +++     +++    
Sbjct: 67  -----DSPAAIAHAVM-------------FRQWGFTPDRLATELADDKFAPAPLSADAVA 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE--- 187
             + +            IPEW +   E  +G   +     A  +   +DL          
Sbjct: 109 AFQSRSLDDAPPHIRGDIPEWVQPSFEQAFGAGWLAEA-QALAARPTLDLRANSLKASRD 167

Query: 188 ---TWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLF 237
                  + NA         ++           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KVVKALERANAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
              +   VLD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 LAHDGEQVLDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +            D VLVDAPC+ TGT RR PD  W     ++ +    Q+  L Q  SF
Sbjct: 288 DDARALAALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASSF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS-AYWKSIDMAMALSPEGWI 413
           VK GG +++  CS+  Q++EE  ++    +P    +  L +       D     S +G  
Sbjct: 348 VKSGGELIYVTCSVLPQENEEQARRFTADNPDFQIVSALPAWDQLFGKDAPRPHSSDG-- 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +   +   S+  DGFF   ++R 
Sbjct: 406 -----LSVTLTPASTDTDGFFFCRMQRK 428


>gi|148910608|gb|ABR18374.1| unknown [Picea sitchensis]
 gi|224286369|gb|ACN40892.1| unknown [Picea sitchensis]
          Length = 641

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 131/349 (37%), Gaps = 24/349 (6%)

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           A R +       +   +                 + + P      L       R   +  
Sbjct: 176 ALRQEGTTRKDYVNQLVADLSLYYGYNDYLVQTFLEMFPVAEVVELIEANEISRPTCLRT 235

Query: 171 ACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
             +     DL  V  +       L        G+ + +    I + P +  G + +Q AS
Sbjct: 236 NTLKTRRRDLAGVLINRGVNLDPLGK--WSKVGLIVYDSQVPIGATPEYMAGHYMLQSAS 293

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +PV          VLD+ AAPGGKT  +   + +   + A ++   RL+ L  N+ R+
Sbjct: 294 SFLPVMALAPQEKERVLDMAAAPGGKTTYIAALMKNTGIIYANELKNSRLKSLSANIHRM 353

Query: 287 HLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            +    I   D  +          D VL+DAPCS TG I +  +V   +  +DI+K A  
Sbjct: 354 GVTNSIICNYDGRELPKVLGLNSLDRVLLDAPCSGTGIIWKDENVKSKKSAEDIMKCAFL 413

Query: 344 QRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
           Q++LLL  I  V    K GG +V+S CS+   ++E VV   L    + V    L+     
Sbjct: 414 QKQLLLAAIDMVDAGSKSGGYLVYSTCSITVAENEAVVNYALSKRDVKVVPCGLDFGQHG 473

Query: 400 SIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRRL--IQP 444
            +            R  P +    +       MDGFF   L+++   +P
Sbjct: 474 FVRFREH-------RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNTKP 515


>gi|86355962|ref|YP_467854.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli CFN 42]
 gi|86280064|gb|ABC89127.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli CFN 42]
          Length = 429

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 153/448 (34%), Gaps = 44/448 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++     Q  +    D    DLA         ++     +++    
Sbjct: 67  -----DSASAIAHAVM---FRQWGF--TPDSLGADLAD--------DKFAPTPLSADALA 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
               +            IPEW +   E  +G   +     A  +   +DL       +  
Sbjct: 109 AFASRSLDDAPPHIRGDIPEWVQPSFEQAFGAGWLAEA-QALAARPTLDLRANILKASRD 167

Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237
             + A+                           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
              +   +LD CA  GGKT  +   + +  +V A D  +RRL  +   L R       + 
Sbjct: 228 LAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRRRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +     +      D VLVDAPC+ TGT RR PD  W     ++ +    Q+  L Q   F
Sbjct: 288 DDVKGLFGLAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLAERTAQQQDALAQASGF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GG +++  CS+  Q++EE V++    +P    +  L +        A        + 
Sbjct: 348 VKTGGELIYVTCSVLPQENEEQVRRFTADNPDFQIVSALPAWDGLFGKDAPHPHSSDGLT 407

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +       +   S+  DGFF   ++R  
Sbjct: 408 V------TLTPASTDTDGFFFCRMQRKA 429


>gi|78067943|ref|YP_370712.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia sp. 383]
 gi|77968688|gb|ABB10068.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia sp. 383]
          Length = 463

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 100/440 (22%), Positives = 170/440 (38%), Gaps = 39/440 (8%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           R+  +L   L   +        +   +   + +   T+R L   D ++   +  + P   
Sbjct: 43  RRGTALPAALSAVFAQMPSGAQALA-RGATQDVAYRTMRRLGSADWLIGRFISKAPP--- 98

Query: 80  YSLQQLLRVSVAQIL----YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
             +  +L  + A +L          + VVD AV      +E      +VN++LRR  RE+
Sbjct: 99  AHVHAVLAGAFALLLDPADEAAYPAFTVVDQAVTVIGARRECAFAKGMVNAVLRRFLRER 158

Query: 136 IEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
             L       +        W+ + ++  +       ++        + L V     +   
Sbjct: 159 DALVAALQDDVVARWNYRAWWVDSVKRAWPDAWQAILAAGERQGP-LTLRVNARRASVDA 217

Query: 192 KLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            L+                        +  +PGFA+GV  VQDA A +  +  G  + + 
Sbjct: 218 YLDTLRANGIEATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGARDGMR 277

Query: 245 VLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFD 300
           VLD CAAPGGKT  ++  + A+V AL+    R  ++  NL RL L A D+   D      
Sbjct: 278 VLDACAAPGGKTGHILELADAEVVALESDATRAARIGENLVRLSLEA-DVRVGDAGAPGA 336

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           +   + FD +L D PCS++G +RRHPD+ W R   DI      QR++L      VKPGG 
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++  CS+  ++ E   +    +    V L          +    A              
Sbjct: 397 LLYVTCSVFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVQGGAA-------------- 442

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                 ++  DGFF    ++
Sbjct: 443 AGALDQNTDHDGFFYAQFQK 462


>gi|329120291|ref|ZP_08248959.1| RsmB/NOP family methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462632|gb|EGF08955.1| RsmB/NOP family methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 422

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 158/445 (35%), Gaps = 54/445 (12%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L+ ++        +L           L ++D+  +       +R   +        L  
Sbjct: 12  VLADILAFAQPADAVLSAYLRRHP--KLGRQDRSEIAETAFAAIRHYQK----TAAALPD 65

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              + + +    L +        +++    +    EQA          +  + +      
Sbjct: 66  PPAQARKAALAALVLG----RGFNISRLDGLADREEQAFLAALKARKNEFSDGLNT---- 117

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTVKF---DIETW 189
                       + +P+W  + L      +  +L    +   P  +DL         +  
Sbjct: 118 -----------AAELPQWLTDTLRGSGFPDEDILRFGRSVARPAPLDLRANTLKARRDKI 166

Query: 190 AHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              L    +             +         P F +G   VQD  + +   L G     
Sbjct: 167 LAALQQQGIQAEATPYSPWGIRLRDKAALYGHPLFLDGSIEVQDEGSQLTALLLGAKRGD 226

Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296
           +V+D CA  GGKT     +  +  ++ A D +++RL KL+  + R  L          E 
Sbjct: 227 TVIDFCAGAGGKTLALGAMTANKGRIYAFDTAEKRLSKLKPRMTRAGLTNIHPERIGSEH 286

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D            VLVDAPCS  GT+RR+PD+ + +    + + A  Q  +L      V 
Sbjct: 287 DPRISRLNAKAQRVLVDAPCSGLGTLRRNPDLKYRQSPATVAQLAEQQHSILAAAARLVI 346

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V++ CS+  Q++E+  ++ L   P   E  PL+ A   +    + L    ++R+ 
Sbjct: 347 PGGRLVYATCSILPQENEQQAERFLAEHP---EFEPLDCAALLAA-QKVPLDTGKYLRL- 401

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
                  D  +   DGFFA A RR 
Sbjct: 402 -------DTAAHHTDGFFAAAFRRK 419


>gi|301624894|ref|XP_002941729.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           [Xenopus (Silurana) tropicalis]
          Length = 749

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 133/327 (40%), Gaps = 32/327 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++  E L   +    ++   +AC     I +            A  L      
Sbjct: 296 ATYYSYGDYMIETLSELFPVSELVDFLEACEVQRPITIRTNTLKTRRRDLAQALINRSVN 355

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       N  VLD+C A
Sbjct: 356 LDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCA 415

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307
           PGGKT+ +   + +   V A D++  RL  +  NL RL +    I   D          F
Sbjct: 416 PGGKTSYMAQLMKNTGIVVANDMNADRLRSVVGNLHRLGVTNCIISNYDGRQISKVLGGF 475

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +   D+ + A  Q++L+L  I  +    + GG +V+
Sbjct: 476 DRVLLDAPCSGTGIISKDPAVKTNKSVQDVQRCAHIQKELILSAIDALDAQSQTGGFMVY 535

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V+LVP    + K              R  P +    
Sbjct: 536 CTCSITVEENECVVDYALKKR--NVKLVPTGLDFGK-----EGFVRFKERRFHPSLRQAR 588

Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444
           +    +  MDGFF   LR+    + +P
Sbjct: 589 RFYPHTHNMDGFFIAKLRKFSNTIPKP 615


>gi|221214672|ref|ZP_03587642.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD1]
 gi|221165562|gb|EED98038.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           multivorans CGD1]
          Length = 490

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 101/476 (21%), Positives = 176/476 (36%), Gaps = 57/476 (11%)

Query: 2   KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
            SG  ARL +  +    L             +R+  +L   L   +   A    +   + 
Sbjct: 34  SSGRAARLSALRVAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMASGAQALA-RG 92

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLP--------RKKYSLQQLLRVSVAQILYLDVA 99
             + +   T+R L  +D ++  ++  + P             L      +          
Sbjct: 93  ATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLAGALALLLDADGEAAY-------P 145

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKER 155
            + VVD AV      +E      +VN++LRR  RE+      +            W+ + 
Sbjct: 146 PFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAMHADPVAQWNYRAWWIDA 205

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKEL 208
           +   +       ++        + L V     +    L                      
Sbjct: 206 VRRAWPDAWQAILAAGDRQGP-LTLRVNARRASVDAYLGTLRDNGIEAAAIGRHAVRLAS 264

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVT 267
              +  +PGFA+G+  VQDA A +  +  G  + + VLD CAAPGGKT  ++  + A+V 
Sbjct: 265 ALPVERIPGFADGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVV 324

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRR 324
           AL+    R  ++  NL RL L A ++   D      +   + FD +L D PCS++G +RR
Sbjct: 325 ALESDASRATRIGENLARLSL-AAEVRVGDAGAPDGWYDGRPFDRILADVPCSASGIVRR 383

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           HPD+ W R   DI      QR++L      VKPGG +++  CS+  ++ E+  +    + 
Sbjct: 384 HPDIRWLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAAC 443

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              V L        ++                      +   ++  DGFF    ++
Sbjct: 444 EDAVRLDAPGQLLPRAASGGAGSE----------GAAGVPDPTTDHDGFFYARFQK 489


>gi|170727779|ref|YP_001761805.1| Fmu (Sun) domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169813126|gb|ACA87710.1| Fmu (Sun) domain protein [Shewanella woodyi ATCC 51908]
          Length = 460

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 145/451 (32%), Gaps = 57/451 (12%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             L   VM K+     ++   +  +       +D+ ++R  +    R+   +        
Sbjct: 43  YQLFHQVMDKQQPADRVVGEYFRVNKKHG--SKDRRVIRESLFALFRWWGWL-------- 92

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                 +    Q  L       + L +          E     +       + ++     
Sbjct: 93  -RKFDSQSEIEQTWL-------IQLTINARLESHPWSEFISAWETFAGLVSINSAPEFSH 144

Query: 132 SREKIELLQRIAGISII------PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
             ++   L               P+WF E   +   ++R+  +      P         D
Sbjct: 145 ISQRATWLNEQFSEHCFTTDELVPDWFWEVCPSENSEQRLALVESLSSRPPIWGRVQNID 204

Query: 186 IETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
           ++     L             +  I L     ++  L  + EG   +QD  + +  QL  
Sbjct: 205 LDDAIQSLQKLDIPAKGCEFFSDSINLGNKNINLNGLSLYKEGELEIQDLGSQVVGQLCQ 264

Query: 239 TLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              + +  D C+  GGK          Q   +   + A D+ ++ LE+L     R     
Sbjct: 265 PRADDNWWDTCSGAGGKSLQIRSLMLQQSQEAQGSIIASDIRRKPLEELAKRAKRAGFKK 324

Query: 291 EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                  + +   P   FD VLVDAPCS TGT RR+PD+ W    D ++     Q  +L 
Sbjct: 325 ITTSPWKSDELPVPHAHFDGVLVDAPCSCTGTWRRNPDMRWIDTIDTVLDKPSLQLDILT 384

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    VK G  +V++ CSL   ++EEVV+  L         +  +               
Sbjct: 385 RSSKAVKAGATLVYATCSLSPLENEEVVKAFLAQHSDFSLEITTHPFTGAK--------- 435

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   D +  +    +  DG F   + +
Sbjct: 436 --------DTMHTVVPYQADTDGMFVARMLK 458


>gi|209551883|ref|YP_002283800.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537639|gb|ACI57574.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 429

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 150/447 (33%), Gaps = 44/447 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++     Q  +               A    +++     +++    
Sbjct: 67  -----DSAAAIAHAVM---FRQWGFT----------PDSLAAELADDKFAPAPLSADALA 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
               +            IPEW +   E  +G   +     A  +   +DL         +
Sbjct: 109 AFESRSLDDAPPHIRGDIPEWVQSSFEQAFGAGWLTEA-QALAARPTLDLRANILKSSRD 167

Query: 188 TWAHKLNAVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASASIPVQLF 237
                L         +    +            ++ +   F +G + VQD  + I   L 
Sbjct: 168 KAVKALERAGAQAAKVARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 LAHEGDQVLDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +            + VLVDAPC+ TGT RR PD  W     ++ +    Q+  L Q   F
Sbjct: 288 DDARGLSGLAGRCEKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VKPGG +++  CS+  Q++EE V++    +P    +  L +        A        + 
Sbjct: 348 VKPGGELIYVTCSVLPQENEEQVRRFTADNPDFQIVSALPAWDGLFGKDAPRPHSSDGLT 407

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +       +   S+  DGFF   ++R 
Sbjct: 408 V------TLTPASTDTDGFFFCRMQRK 428


>gi|91793994|ref|YP_563645.1| Fmu (Sun) [Shewanella denitrificans OS217]
 gi|91715996|gb|ABE55922.1| Fmu (Sun) [Shewanella denitrificans OS217]
          Length = 464

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 45/444 (10%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+  +     +L   + ++       +D+ ++R  +    R+          +L   +  
Sbjct: 44  VLISKQPADRVLGQYFRENKKHG--SKDRRIIRETLFGLFRWWG----WGQQLLSKEIQA 97

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
            + ++   L  S A +      D      A         +     L   +      +   
Sbjct: 98  -EANIWYSLLSSTALLEQHAWQDIRSAWQAFAALDSQLIHESEQLLTQGVSVTHKLKAFS 156

Query: 138 L---LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194
               +       ++P WF +  +     +  L  + +   PL++ +         A   N
Sbjct: 157 SLTGVNEAKVDDLLPLWFWQHCKLDEAAKLPLIEAMSSRPPLWLRVQKHSRTAVIAELAN 216

Query: 195 ------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
                 A    +  + L     ++  +  + +G   VQD  + +  Q+     +    D 
Sbjct: 217 TEITAEASEYFSDALSLGYQSINLNEVSLYKQGHLEVQDLGSQVIGQICQPKADEHWWDT 276

Query: 249 CAAPGGKTAQLIVSGAKV-----------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           C+  GGKT QL     +            T+ D+    LE+L+    R       I + +
Sbjct: 277 CSGAGGKTLQLRSLMYQQANSSNGESGSITSSDIRSNALEELKKRAARAGFDGISIAKWN 336

Query: 298 AFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           +         FD VLVDAPCS TGT RR+PD+ W      I      Q  +L +    VK
Sbjct: 337 SDALPVEANAFDGVLVDAPCSCTGTWRRNPDMRWLDTASAIEDKPALQLDILTRSSKAVK 396

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V++ CSL   +++ VV   L ++     L   +    ++            + + 
Sbjct: 397 AGGQLVYATCSLADAENQAVVNDFLANNSEFELLEIEHPFNGETT---------KMLTVW 447

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P             DG F   + +
Sbjct: 448 PQDA--------NSDGMFVAKMVK 463


>gi|60416136|gb|AAH90742.1| Si:dkey-91i17.1 protein [Danio rerio]
          Length = 658

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 131/320 (40%), Gaps = 28/320 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  ++   +L + +    ++   +A      + +            A  L    + 
Sbjct: 268 CTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVN 327

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV         S+LD+ AA
Sbjct: 328 LDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGESMLDMSAA 387

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   + A D +  RL+ +  N+ RL +    I   D   +      F
Sbjct: 388 PGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQFPKVMGGF 447

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++SA  Q++L+L  I  V      GG +V+
Sbjct: 448 DRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNADSQTGGYLVY 507

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
             CS+  +++E VV   L+     V+LVP    + K        +     R  P   +  
Sbjct: 508 CTCSIMVEENEWVVDYALKKR--NVKLVPTGLDFGK-----EGFTRFKEKRFHPSLKLSR 560

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +    S  MDGFF   L++L
Sbjct: 561 RFYPHSHNMDGFFVAKLKKL 580


>gi|66812796|ref|XP_640577.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
 gi|60468601|gb|EAL66604.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
          Length = 647

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 27/331 (8%)

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
                   L + I       +W  E     +     L   +A  +   + +         
Sbjct: 237 SRQTYMDRLREDICTYFGYSQWLAEVFLKIFNASEALEFFEANETHRPLTIRANTLKVRR 296

Query: 187 ETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           +  A  L A  +    I+       + +   +I + P +  G +  Q AS+ +PV     
Sbjct: 297 KDLAEALIARGVHLEPIKWSQVGLTIYDTQVAIGATPEYLAGQYIQQSASSFLPVLALAP 356

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
             N  VLD+CA+PGGKT     ++ +   + A DV+K R++ L  N+ RL +    +  +
Sbjct: 357 QPNERVLDMCASPGGKTTYIAAMMKNTGTLVANDVNKDRIKSLVANIHRLGVKNCMVSNL 416

Query: 297 DAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
           D   Y      FD VLVDAPC   G I + P +  ++   D++     Q++LLL+ I  V
Sbjct: 417 DGRQYPSVLSGFDRVLVDAPCVGLGVISKDPQIKISKSEQDVITCTHTQKELLLKAIDSV 476

Query: 356 ----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
                 GGI+V+S CSL  +++E VV   LR+  + V    +            +     
Sbjct: 477 DASSPTGGIIVYSTCSLTVEENEAVVDYALRNRDVIVVDTTIEFGVDGFTSFRES----- 531

Query: 412 WIRITPD--MLEKIDGVSSGMDGFFAVALRR 440
             R  P   + ++    +  MDGF+   L++
Sbjct: 532 --RFHPSLALTKRYYPHTHNMDGFYVAKLKK 560


>gi|172062101|ref|YP_001809753.1| sun protein [Burkholderia ambifaria MC40-6]
 gi|171994618|gb|ACB65537.1| sun protein [Burkholderia ambifaria MC40-6]
          Length = 462

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 168/444 (37%), Gaps = 48/444 (10%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           R+  +L   L   +        +   +   + +   T+R L   D ++  ++  + P   
Sbjct: 43  RRGTALPAALAAVFAQMPADAQALA-RGATQDVAYRTMRRLGSADWLIGRLVGKAPPAHV 101

Query: 80  YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            ++              +           + +VD AV      +E      LVN++LRR 
Sbjct: 102 QAVLAAALALLLDPEETAAY-------PAFTIVDQAVTVIGARREFAFAKGLVNAVLRRF 154

Query: 132 SREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
            RE+  L                W+ + ++  +       ++        + L V     
Sbjct: 155 QRERDALVAALQDDPVARWNYRPWWIDAVKRAWPDTWQAILAAGERQGP-LTLRVNARRA 213

Query: 188 TWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +    L+                        +  +PGFA+GV  VQDA A +  +  G  
Sbjct: 214 SVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGAR 273

Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
           + + VLD CAAPGGKT  ++  +GA+V AL+    R  ++  NL RL L A D+   D  
Sbjct: 274 DGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSL-AADVCVGDAG 332

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
               +   + FD +L D PCS++G +RRHPD+ W R   DI      QR++L      VK
Sbjct: 333 APDAWYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVK 392

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +++  CS+  ++ E   +    +    V L          +               
Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGV--------------- 437

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P +       ++  DGFF    ++
Sbjct: 438 PAVAAGALDQNTDHDGFFYARFQK 461


>gi|322692462|gb|EFY84371.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium acridum CQMa
           102]
          Length = 657

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 171/444 (38%), Gaps = 62/444 (13%)

Query: 33  YGDSAFRLLSQR-DQILVRAIVNVTLRFLPR-----ID----AVLDFVLISSLPRKKYSL 82
              +    LS++ D+ L +                 ID     ++D      L  K  +L
Sbjct: 164 LTAANIEGLSRKLDRKLAQEAATNAAEMAESALQTNIDGDKPHIIDDDDDDELSAKANAL 223

Query: 83  QQ----LLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
                 LLR  + +       +  V+D     A+                R  S    +L
Sbjct: 224 LAPDLQLLRTRITE-------NIRVLDDFANLAE--------------DGRSRSEYTAQL 262

Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNA 195
           ++ +       E+  E+L N +      A  +A  +   + +    ++      A  L  
Sbjct: 263 IKDVCAYYGYSEYLAEKLYNLFTPREAFAFFEANETARPVVIRTNTLRTHRRDLAQALIN 322

Query: 196 VMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
             +    +                + + P +  G + +Q AS+ +P        N  VLD
Sbjct: 323 RGVTLEPVGKWSKVGLQVFESSVPLGATPEYLAGHYILQAASSFLPCMALDPQENERVLD 382

Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-P 303
           + AAPGGKT  +   + +   + A D +K R + L  N+ RL      +   DA ++  P
Sbjct: 383 MAAAPGGKTTYMAAMMKNTGVIIANDPNKARAKGLIGNIHRLGARNVIVSNYDAREFPKP 442

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGG 359
              FD VL+DAPCS TG I + P V   +   D ++    Q++LLL  I  V    K GG
Sbjct: 443 MGGFDRVLLDAPCSGTGVIAKDPSVKTNKTELDFMQLPHTQKQLLLAAIDSVNHSSKSGG 502

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD- 418
            +V+S CS+  +++E+VVQ  L+  P  V+LV    A+ K        +     R  P  
Sbjct: 503 YIVYSTCSVTIEENEQVVQYALKRRPN-VKLVDTGLAFGK-----EGFTSFMGKRFDPSL 556

Query: 419 -MLEKIDGVSSGMDGFFAVALRRL 441
            +  +    +  +DGF+    +++
Sbjct: 557 RLTRRYYPHAYNVDGFYVAKFKKI 580


>gi|121609225|ref|YP_997032.1| sun protein [Verminephrobacter eiseniae EF01-2]
 gi|121553865|gb|ABM58014.1| sun protein [Verminephrobacter eiseniae EF01-2]
          Length = 470

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 185/461 (40%), Gaps = 59/461 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +    +R   S T +L     D          +  V+A++   LR   R + +   +
Sbjct: 37  AVAVALQAIRSGQSGTAVLAAVDADL---------RPGVQALLFQVLRQAGRAELLRRQL 87

Query: 71  LISSLPRKKYSLQQLLRVSVAQILY--LDVA--DYAVVDLAVEQAKRDKENRHFAKLVNS 126
              + P    ++  LL V++A + +   D     + +V+ AVE AK     R  +  +N+
Sbjct: 88  AARTPP---PAVDALLCVALA-LCWNPEDAPYAPFTLVNQAVEAAKHSAAARAQSAFINA 143

Query: 127 ILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYI--DL 180
            LRR  RE+  LL             P W+  +L   + +     +         +    
Sbjct: 144 CLRRFLREREALLAATDDDPLARWNHPRWWIRQLRQDHPRHWQQILQANNRHAPMVLRVN 203

Query: 181 TVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQDASASIPV-- 234
             K  +  +   L+A+ +              P  + +LPGFA+G   VQDA+A      
Sbjct: 204 QRKCSLAQYLRALDAIDMQATVVADMGLALRQPVPVQALPGFAQGWVSVQDAAAQKAAPL 263

Query: 235 --QLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
             Q       L VLD CAAPGGKTA         +  +VTAL++   R  ++  +L RL 
Sbjct: 264 LLQGLDLRQPLRVLDACAAPGGKTAHLLELAGADAPLQVTALEIDATRSARIDASLQRLG 323

Query: 288 LYAEDIIEMD-------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           L A  ++  D          +C    FDA+L+DAPCS++G +RRHPDV W R   DI   
Sbjct: 324 LGA-QVLVADATRPQDWWQPHCGGAPFDAILLDAPCSASGIVRRHPDVRWLRRATDIAPL 382

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q +LL      ++PGG +++ +CS+ + + +  VQ  L        L+P        
Sbjct: 383 AALQARLLRALWPLLRPGGRLLYCSCSVFRAEGDAPVQAFLAHH-TDARLLPSPGHLLPG 441

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                   P+                    DGFF   L +L
Sbjct: 442 NADKDGAVPDN--------------AGGDHDGFFYALLHKL 468


>gi|146185731|ref|XP_001032410.2| NOL1/NOP2/sun family putative RNA methylase containing protein
           [Tetrahymena thermophila]
 gi|146143105|gb|EAR84747.2| NOL1/NOP2/sun family putative RNA methylase containing protein
           [Tetrahymena thermophila SB210]
          Length = 759

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 126/318 (39%), Gaps = 24/318 (7%)

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM 197
                        +     +    ++   ++      + +         +  A  L    
Sbjct: 163 YFMQYYNYNRDLVQLFMTMFNPNELVQFFESNEQQRPLTIRTNTLKTRRKELAQILIQRG 222

Query: 198 --------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
                       G+++ +    I + P +  G + +Q AS+ +PV       N  +LD+ 
Sbjct: 223 VNLDSLAEWTKVGLKIYDSKVPIGATPEYLAGHYMLQSASSFLPVIALAPQPNEKILDMA 282

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KK 305
           AAPGGKT  +   + +   + A DV   R + L  N+ R+ +    +   D         
Sbjct: 283 AAPGGKTTYIAQLMKNTGVLFANDVKADRNKALIFNVQRMGINNCIVTNYDGRKLNKVIH 342

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
             D VL+DAPC+  G I R P V  T+   D+ K A  QR+L+L  I   K GG VV+S 
Sbjct: 343 NCDRVLLDAPCTGLGIIARDPSVKATKQLIDVQKHAHLQRELILSAIDCCKKGGYVVYST 402

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKI 423
           CS+  Q++E VV   L++    V+LV +     +        +     R  P +    +I
Sbjct: 403 CSVTVQENESVVDYALKNR--FVKLVDMGIEVGE-----EGYTKYQDKRFDPQLKKTRRI 455

Query: 424 DGVSSGMDGFFAVALRRL 441
                 MDGF+   L++L
Sbjct: 456 LPHVHNMDGFYVAKLKKL 473


>gi|145344001|ref|XP_001416528.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576754|gb|ABO94821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 485

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 139/376 (36%), Gaps = 32/376 (8%)

Query: 90  VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS--ILRRVSREKIELLQRIAGISI 147
           V Q+   D  D  + DL+  Q +  +  R      N     +  +     L   +A    
Sbjct: 108 VYQLPDSDEEDDGIPDLSAIQMRIQEIVRVLKDFKNRRESGKSRNDYVERLTADLATYYG 167

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR 204
              +      + +  +  + + +A      + +            A  L    +    + 
Sbjct: 168 YNSFLIRYFLDTFSVDETMELLEANEQQRPVTIRTNTLKVRRRELAESLINRGVNLDPVG 227

Query: 205 LKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                          I + P +  G + +Q AS+ +P           VLD+ AAPGGKT
Sbjct: 228 KWSKVGLLVYDSRVPIGATPEYMAGHYILQSASSFLPCMALAPQEGERVLDMAAAPGGKT 287

Query: 257 AQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312
             L   + +   + A +  K+RL  L  NL RL      +   D           D VL+
Sbjct: 288 TYLAALMRNTGMIFANEYQKKRLNSLVANLQRLGCTNSTVCNYDGRALPKVIGHVDRVLL 347

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSL 368
           DAPCS TG I +   V  ++  +DI K A  Q++LL+  I       K GG VV+S CS+
Sbjct: 348 DAPCSGTGVIAKDSSVKTSKSAEDIAKCAHLQKELLVAAIDCCDANSKTGGYVVYSTCSI 407

Query: 369 DKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
             +++E VV  +LR   + +    L      +          S E   R  P +      
Sbjct: 408 AVEENEAVVDYILRKRDVKIVSSGLEFGRKGFTSYRGKNFHPSVEMARRFYPHV------ 461

Query: 426 VSSGMDGFFAVALRRL 441
               MDGFF   L++L
Sbjct: 462 --HNMDGFFVCKLKKL 475


>gi|297620390|ref|YP_003708527.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia
           chondrophila WSU 86-1044]
 gi|297375691|gb|ADI37521.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia
           chondrophila WSU 86-1044]
          Length = 421

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 168/451 (37%), Gaps = 45/451 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
               N R  +   L    R+   L   L            S +D  L R +   T R   
Sbjct: 4   TKTKNPREAAYLALLSSAREESFLIDSLAQWQAKCRP---SIQDYHLAREVAYGTTRMAL 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            +D +   +        K   + L R+ + Q  Y+D +  YA+VD  ++ AK    +  F
Sbjct: 61  ALDHLALQLADKKKLALKLREKILFRMGLYQFHYMDKIPLYAIVDETIKIAKIHC-HESF 119

Query: 121 AKLVNSILRRVSREKIE-----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            K +N+ LR+V     +      +  ++     P ++ + L   +G E+   I +A   P
Sbjct: 120 VKFLNACLRKVEEIDPQLPKGETVPELSIRYSYPAYYVQELVQNFGLEKAEEIMEAGNRP 179

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA---EGVWWVQDASASI 232
                 V+            +    G      +      +   +   +        +  +
Sbjct: 180 SQTMFRVRPQASRPKEANGEIDFLAGTRCGMGVIRDPSLISNISSSSDYYIQNATPAELM 239

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
                      ++LDLC++PGGK      +   A+++A DVS  +L+ L  N  +  +  
Sbjct: 240 SSLAQDFGAPKNILDLCSSPGGKLILAHDLYPDAELSANDVSSGKLKPLSENCAKYGIS- 298

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             +  +   ++   + FD V++D PCS+TG + + P+  W      + +    Q +LL +
Sbjct: 299 TTLSSVRGEEFPLAQKFDLVILDVPCSNTGVLNKRPEARWRLSQKTLEQLEEIQLQLLRR 358

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
           GI  +  GG + +  CS+ K+++  ++ KV +   +   L                    
Sbjct: 359 GIELLDKGGELWYLTCSVLKRENGRLIDKVCQELSLETRLKEA----------------- 401

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               I P+        + G DG F  ALR++
Sbjct: 402 ----ILPN--------ADGWDGGFGCALRKI 420


>gi|149200044|ref|ZP_01877070.1| tRNA and rRNA cytosine-C5-methylase [Lentisphaera araneosa
           HTCC2155]
 gi|149136917|gb|EDM25344.1| tRNA and rRNA cytosine-C5-methylase [Lentisphaera araneosa
           HTCC2155]
          Length = 407

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 97/450 (21%), Positives = 181/450 (40%), Gaps = 52/450 (11%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK         +++ +L    +         DLE          + D      +     R
Sbjct: 1   MKDNKTFKTLSLATQVLKNWTQSHN-----FDLELNRLRRSGNHESDLKRASQLCLCVFR 55

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
               ++ ++  +       +   +  LL  S+A +LY+D +      D AVE AK+   +
Sbjct: 56  KKESLEKIVKKLSQKRPRGR---VMHLLLPSMAAMLYMDKITPQGFADSAVEAAKKI-LS 111

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           +H A  +NS   ++  +K  LL+       +    ++  +  +  E+V + +        
Sbjct: 112 KHEANFLNSFFHKLVDQKENLLREAQNDLNLGSELEKNWKKSFSAEQVQSFASTLSLEAE 171

Query: 178 I-DLTVKFDIETWAHKLNAVML--PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
           +    + +D       L  +    P    ++ +  + I   P   +  +++QD + S+ +
Sbjct: 172 LNCRLINYDNHDLLSPLEDLAWDSPFQFYKINDAAKFISQTP---QENFYIQDPATSLCI 228

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
            L     +  + DLC+APGGKT  +        +V A D+S++RLE+LR NL        
Sbjct: 229 SLLKPQKDEVIADLCSAPGGKTLMISHLLEGTGQVFASDISEKRLERLRENLAHQ--SNV 286

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
            +  +DA      + FDA+L+D PCS+TG +RR PD  W+     + +    Q ++L Q 
Sbjct: 287 TVQCLDARSSDYSEKFDAILLDVPCSNTGVLRRKPDARWSFSQKKVNELVELQAEILAQA 346

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG + +S CS++  ++ + V+  ++S P   EL                     
Sbjct: 347 AKMLKAGGRICYSTCSIEAAENIQQVENFIKSHP-DFELSESR----------------- 388

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             ++ P             DG FA  L+R 
Sbjct: 389 --QLYPCPQ---------HDGAFAATLQRK 407


>gi|46581764|ref|YP_012572.1| sun protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46451187|gb|AAS97832.1| sun protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232323|gb|ADP85177.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris RCH1]
          Length = 507

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 95/505 (18%), Positives = 157/505 (31%), Gaps = 103/505 (20%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V+R  + +   LD          LS++D  L   +V   LR   R+  
Sbjct: 35  PARAGALVALDAVVRAGVDVQAALDDSLSH---ASLSRQDAALCTELVYGYLRSEIRLSW 91

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   L +   +    +  LL ++  ++   D V  YA +D AV   +        ++L 
Sbjct: 92  LVRRFLKAP-SKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALYGT-GVSRLA 149

Query: 125 NSILRRVSREKIEL------------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           N++LR V R                   R+      P W  +   + YG+E+  A+ +A 
Sbjct: 150 NAVLRNVDRLGDAWRVADFYACVGDNRDRLCVRHSAPRWLVDLWCDGYGEEKTTALLEAS 209

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGI----------RLKELPESIVSLPGFAEGV 222
           +      + +       A  L  ++    G                          +EG 
Sbjct: 210 LLHPAPGVRINLARADGADCLQQLLSGNAGTGRQAAGKAGVVFTSGGTPSEVTSLVSEGR 269

Query: 223 WWVQDASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLR 280
              Q  ++   +             D C   GGKTA L+ +G  V A  D S  RL  LR
Sbjct: 270 ASRQSGASQSALAALEPEVWPGPVWDCCCGRGGKTAALVETGVAVVAASDPSMSRLRGLR 329

Query: 281 CNLDRLHLY-----------------AEDIIEMDAFDYCPKKLFDA-------------- 309
            +  RL L                  A         D       D               
Sbjct: 330 RDFARLGLPVPLAVRASAVRPPFSCAASMARAGSCGDGGSPLAIDGIEVEVSRGQSATGL 389

Query: 310 --------------VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                         +LVDAPCS  GT+ R PD+   R T  I +    Q  +L      +
Sbjct: 390 VNASGLGSGGLFGTILVDAPCSGLGTLSRRPDIKRKRTTAQIAELVALQEAILDAVWPCL 449

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +  G++ +  C+ + Q++E  +   L    +   L        + +              
Sbjct: 450 RSDGVLAYITCTRNPQENELRIAAFLERH-LDARLEIAYETPLEDVSREF---------- 498

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                            F+A  LR+
Sbjct: 499 -----------------FYAARLRK 506


>gi|328784827|ref|XP_001121968.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Apis
           mellifera]
          Length = 657

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 136/335 (40%), Gaps = 28/335 (8%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK--- 183
           I R  S     L + +        +  E+L   +  + +L   +A      + +      
Sbjct: 314 INRSRSEYMNLLRRDLCTYYSYNNFLMEKLMQIFSLDELLEFLEASEVQRPMTIRTNILK 373

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQ 235
                 A  L    +    I                + + P +  G + +Q AS+ +PV 
Sbjct: 374 TRRRDLAEALINRGVNLDPIGKWTKVGLVVYSSQVPMGATPEYLAGHYILQGASSFLPVM 433

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                 N  +LD+CAAPGGK++ +   + +   + + DV++ R++ +  N  RL +    
Sbjct: 434 ALDPKENEKILDMCAAPGGKSSHIAALMKNTGVLFSNDVNEERIKAVVGNFHRLGITNSV 493

Query: 293 IIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +   D          FD VL+DAPC+ TG + + P V   +D  DI +    QR+LLL  
Sbjct: 494 VCTYDGRKLPSVIKNFDRVLLDAPCTGTGVVSKDPSVKTNKDEIDIQRCCTLQRELLLAA 553

Query: 352 ISFVK----PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           I         GGI+V+S CS+  +++E ++   L+     V+L+     +      A   
Sbjct: 554 IDCANARSESGGIIVYSTCSILPEENEWIIDYALKKR--DVKLISTGLEFG-----AEGF 606

Query: 408 SPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRR 440
           +     R  P   + ++    +  MDGFF   L++
Sbjct: 607 TSYRQFRFHPSLKLTKRFYPHTHNMDGFFVAKLKK 641


>gi|189529666|ref|XP_001922354.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Danio
           rerio]
          Length = 739

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 131/320 (40%), Gaps = 28/320 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  ++   +L + +    ++   +A      + +            A  L    + 
Sbjct: 273 CTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVN 332

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV         SVLD+ AA
Sbjct: 333 LDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGESVLDMSAA 392

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   + A D +  RL+ +  N+ RL +    I   D   +      F
Sbjct: 393 PGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQFPKVMGGF 452

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++SA  Q++L+L  I  V      GG +V+
Sbjct: 453 DRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNADSQTGGYLVY 512

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
             CS+  +++E VV   L+     V+LVP    + K        +     R  P   +  
Sbjct: 513 CTCSIMVEENEWVVDYALKKR--NVKLVPTGLDFGK-----EGFTRFKEKRFHPSLKLSR 565

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +    S  MDGFF   L++L
Sbjct: 566 RFYPHSHNMDGFFVAKLKKL 585


>gi|134025020|gb|AAI35007.1| Si:dkey-91i17.1 protein [Danio rerio]
          Length = 676

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 131/320 (40%), Gaps = 28/320 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  ++   +L + +    ++   +A      + +            A  L    + 
Sbjct: 273 CTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVN 332

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV         SVLD+ AA
Sbjct: 333 LDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGESVLDMSAA 392

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   + A D +  RL+ +  N+ RL +    I   D   +      F
Sbjct: 393 PGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQFPKVMGGF 452

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++SA  Q++L+L  I  V      GG +V+
Sbjct: 453 DRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNADSQTGGYLVY 512

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
             CS+  +++E VV   L+     V+LVP    + K        +     R  P   +  
Sbjct: 513 CTCSIMVEENEWVVDYALKKR--NVKLVPTGLDFGK-----EGFTRFKEKRFHPSLKLSR 565

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +    S  MDGFF   L++L
Sbjct: 566 RFYPHSHNMDGFFVAKLKKL 585


>gi|195401394|ref|XP_002059298.1| GJ18081 [Drosophila virilis]
 gi|194142304|gb|EDW58710.1| GJ18081 [Drosophila virilis]
          Length = 840

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 17/246 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           +      + + P +  G + VQ AS+ +PV       N  VLD+C+APGGK + +   + 
Sbjct: 394 IFNSTVPLGATPEYLAGHYMVQGASSMLPVIALAPQENERVLDMCSAPGGKGSHIAAVMK 453

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320
           +   + A D ++ R++ +  N  RL +    +   DA  +      FD VL+DAPC+ TG
Sbjct: 454 NTGVLFANDANRDRIKAVVANFHRLGIVNAVVSCEDATKFRSIMTGFDRVLLDAPCTGTG 513

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEV 376
            + + P V  T+   D+ +    QRKLLL  I  V      GG +V+S CS+  +++E V
Sbjct: 514 VVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDAKSATGGYIVYSTCSVLPEENEWV 573

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFF 434
           +   L+     V+LVPL   + +        +     R  P   + ++    ++ MDGF+
Sbjct: 574 IDYALKKR--NVKLVPLGIDFGEP-----GFTKFRQHRYHPSLHLSKRFYPHTNNMDGFY 626

Query: 435 AVALRR 440
              L++
Sbjct: 627 VAKLKK 632


>gi|239813610|ref|YP_002942520.1| sun protein [Variovorax paradoxus S110]
 gi|239800187|gb|ACS17254.1| sun protein [Variovorax paradoxus S110]
          Length = 442

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 173/433 (39%), Gaps = 42/433 (9%)

Query: 37  AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96
           AF  +    +  V+A+    LR+L R +A+   +   + P    +L            + 
Sbjct: 28  AFEAVEPAMRPGVQALGFQVLRWLGRAEALRRHLAKRTPPPLPDALLCTALALAWDAQHA 87

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWF 152
               + +VD AVE AKR+   R  A  +N+ LRR  RE+ EL+             P W+
Sbjct: 88  PYEPFTLVDQAVEAAKRNPATRAQASFINACLRRFLRERDELVAATDHEPVAQWNHPRWW 147

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA-------VMLPTGGIRL 205
            ERL+  + ++    +  A  +   + L V     T A    A        +        
Sbjct: 148 IERLKRDHPRDWQRVL-AADNAQPPMTLRVNLRKTTVASYQLALQAVGLTAVRVGEAGLQ 206

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT-------LNNLSVLDLCAAPGGKTAQ 258
                 +  LPGFA+G   VQDA+A +   L             L VLD CAAPGGKTA 
Sbjct: 207 LARARPVQQLPGFADGECSVQDAAAQLAAPLLLEGLLPAAGAAPLRVLDACAAPGGKTAH 266

Query: 259 LIVSG----AKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLV 312
           L+        +VTAL+V   R  ++   L RL L A            +     FDA+L+
Sbjct: 267 LLEFAGPAAIEVTALEVDAARSRRIDETLGRLGLSARVVVADAARPAAWWDGTPFDAILL 326

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPC+++G +RRHPDV W R   D  + A  Q  LL      V+PGG +++  CS+ +++
Sbjct: 327 DAPCTASGIVRRHPDVRWLRRESDTAQLAVQQAALLAALWPLVRPGGRLLYCTCSVFREE 386

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
             + +   L        L                  P+                S   DG
Sbjct: 387 GSQQIDAFLA-HNTDARLGASPGHLLPQSGANARAVPDN--------------PSGDHDG 431

Query: 433 FFAVALRRLIQPK 445
           FF   L +  +P+
Sbjct: 432 FFYALLEK--RPR 442


>gi|120601083|ref|YP_965483.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4]
 gi|120561312|gb|ABM27056.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4]
          Length = 507

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/505 (19%), Positives = 158/505 (31%), Gaps = 103/505 (20%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V+R  + +   LD          LS++D  L   +V   LR   R+  
Sbjct: 35  PARAGALVALDAVVRAGVDVQAALDDSLSH---ASLSRQDAALCTELVYGYLRSEIRLSW 91

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   L +   +    +  LL ++  ++   D V  YA +D AV   +        ++L 
Sbjct: 92  LVRRFLKAP-SKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALYGT-GVSRLA 149

Query: 125 NSILRRVSREKIEL------------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           N++LR V R                   R+      P W  +   + YG+E+  A+ +A 
Sbjct: 150 NAVLRNVDRLGDVWRVADFYACVADNRDRLCVRHSAPRWLVDLWCDGYGEEKATALLEAS 209

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPT----------GGIRLKELPESIVSLPGFAEGV 222
           +      L +       A  L  ++              G+               +EG 
Sbjct: 210 LLHPAPGLRINLARADGADCLQQLLSGNVGTGRQAAGKAGVVFTSGGTPSEVTSLVSEGR 269

Query: 223 WWVQDASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLR 280
              Q  ++   +             D C   GGKTA L+ +G  V A  D S  RL  LR
Sbjct: 270 ASRQSGASQSALAALEPEVWPGPVWDCCCGRGGKTAALVETGVAVVAASDPSMSRLRGLR 329

Query: 281 CNLDRLHLY-----------------AEDIIEMDAFDYCPKKLFDA-------------- 309
            +  RL L                  A         D       D               
Sbjct: 330 RDFARLGLPVPLAVRASAVRPPFSCAASMARAGSCGDGGSPLAIDGIEVEVSRGQSATGL 389

Query: 310 --------------VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                         +LVDAPCS  GT+ R PD+   R T  I +    Q  +L      +
Sbjct: 390 VNASGLGSGGLFGTILVDAPCSGLGTLSRRPDIKRKRTTAQIAELVALQEAILDAVWPCL 449

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +  G++ +  C+ + Q++E  +   L    +   L        + +              
Sbjct: 450 RSDGVLAYITCTRNPQENELRIAAFLERH-LDARLEIAYETPLEDVSREF---------- 498

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                            F+A  LR+
Sbjct: 499 -----------------FYAARLRK 506


>gi|193638967|ref|XP_001943714.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           [Acyrthosiphon pisum]
          Length = 657

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 143/365 (39%), Gaps = 28/365 (7%)

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156
            + ++  +    ++ K                R        LL+ +        +  E++
Sbjct: 243 KIDEHIPIPEVEQRIKDILLVLSNFNKFREENRSRQEYTELLLKDLCTYFSYNTFLMEKM 302

Query: 157 ENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE--- 210
            + +  E +++  +A  +P  + +            A  L    +    I          
Sbjct: 303 MHLFPLEDLMSFLEASETPRPVTIRTNSLKTRRRDLAQALINRGVNLDPIGNWSKVGLVV 362

Query: 211 -----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
                 I + P +  G + +Q AS+ +PV       N  +LD+C+APGGK + +   + +
Sbjct: 363 YNSTVPIGATPEYLAGHYMLQAASSMLPVMALAPQENELILDMCSAPGGKASHIAAIMKN 422

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGT 321
              + A DV+K R + +  N  R+ +    I   D          FD VL+DAPC+ TG 
Sbjct: 423 TGVLIANDVNKNRAKAVIGNFHRMGIANSVISTYDGRHIPQLFKNFDRVLLDAPCTGTGV 482

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEVV 377
           I +   V  ++D  D+ +    QR+LLL  I  +      GG +V+S CS+  +++E V+
Sbjct: 483 ISKDSGVKMSKDETDLQRCFTLQRELLLAAIDSLNFKSSTGGYLVYSTCSVLVEENECVI 542

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFA 435
              L+   + +    L+       ++          R  P M   ++    +  MDGFF 
Sbjct: 543 DYALKKRDVKLVDTGLSFGTEGFTNLRQH-------RFHPTMKLTKRFYPHTHNMDGFFV 595

Query: 436 VALRR 440
             L++
Sbjct: 596 AKLKK 600


>gi|94496910|ref|ZP_01303484.1| tRNA and rRNA cytosine-C5-methylase [Sphingomonas sp. SKA58]
 gi|94423586|gb|EAT08613.1| tRNA and rRNA cytosine-C5-methylase [Sphingomonas sp. SKA58]
          Length = 391

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 159/455 (34%), Gaps = 77/455 (16%)

Query: 1   MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  ++        +   L+   + +  +     RD+  VR  +  
Sbjct: 1   MTPS--ARIQAAIELLDAIIAAARDGGPAADTLIARYFKERRYAG--SRDRRAVRDHIYD 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R                   +         + + Q    D    A +      A    
Sbjct: 57  AIRR----------AAERPDTGRAA------MIGLTQ----DQPALAALFDGSPHAPLPI 96

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           E      L  ++   +       +++ A +   P   +                +   + 
Sbjct: 97  EPGEAGALARAVPGWLQPLLAAPVEQDALLGRAPVDLR---------------VNRLRAT 141

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
               + +  D    +   +A+ LP G          +   P + +G+  VQDA +     
Sbjct: 142 PAQVVPLLPDAIAISGLPDALRLPEGW--------PVEQHPAWQDGLVEVQDAGSQWIAA 193

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                + ++V+DLCA  GGKT   A  +    ++ A D  + RL +L    +R      D
Sbjct: 194 ACDARSGMTVVDLCAGAGGKTLALAAAMAGQGRLIAADTIRSRLARLEPRAERAGATFID 253

Query: 293 IIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
            + +D           ++  D VLVDAPCS TGT RR+P+  W      + +    Q ++
Sbjct: 254 TLLLDQSHEARGLAHLQEQADVVLVDAPCSGTGTWRRNPEARWRLTPARLDRLVAEQARI 313

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      V+PGG++V++ C+L  ++  + V   L      +          + ID+ +  
Sbjct: 314 LDFAAPLVRPGGLLVYATCALVDREGRDQVAAFLDRHEGWI---------AEPIDLPVGR 364

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +  G + +TP           G DGF+   LRR  
Sbjct: 365 AHGGGLLLTPGH--------DGSDGFYFARLRRQA 391


>gi|332018753|gb|EGI59318.1| Putative ribosomal RNA methyltransferase NOP2 [Acromyrmex
           echinatior]
          Length = 677

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 130/322 (40%), Gaps = 28/322 (8%)

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAV 196
             +        +  E+L   +  + +L   +A      + +            A  L   
Sbjct: 346 MDLCTYYSYNNFLMEKLMQIFPLDELLEFLEASEVQRPMTIRANTLKTRRRDLAEALINR 405

Query: 197 MLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
            +    I                + + P +  G + +Q AS+ +PV       N  +LD+
Sbjct: 406 GVNLDPIGKWTKIGLVVYSSQVPMGATPEYLAGHYMIQGASSFLPVMALDPKENERILDM 465

Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           CAAPGGK + +   + +   + A D++K RL+ +  N  RL +    I   D   +    
Sbjct: 466 CAAPGGKASHIAAIMKNTGTLFANDLNKERLKAVVGNFHRLGIVNCVICSYDGRKFPTII 525

Query: 306 L-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGI 360
             FD VL+DAPC+ TG + + P V   +   DI +    QR+LLL  I  V      G I
Sbjct: 526 KGFDRVLLDAPCTGTGVVAKDPSVKANKAEVDIQRCCTLQRELLLAAIDCVNARSESGAI 585

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD-- 418
           +V+S CS+  +++E ++   L+     V+L+P +  +          +     R  P   
Sbjct: 586 IVYSTCSILPEENEWIIDYALKKR--DVKLLPTDLEFG-----TDGFTSYRQYRFHPSLK 638

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + ++       MDGFF   L++
Sbjct: 639 LTKRFYPHVHNMDGFFVAKLKK 660


>gi|42522650|ref|NP_968030.1| putative sun protein [Bdellovibrio bacteriovorus HD100]
 gi|39575182|emb|CAE79023.1| putative sun protein [Bdellovibrio bacteriovorus HD100]
          Length = 395

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 152/455 (33%), Gaps = 76/455 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   +        L  +  +      ++      ++      RD+      V   +R+ 
Sbjct: 1   MKIHKHLVSEIVTALDEIFEQGFYADKVIQRHLKANSRWG--SRDRRFFAESVYEIVRWE 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +  + D    + L +                           +   +           
Sbjct: 59  RLLSHLAD---DNDLWKVW---------GAY--------WVRGGNELPDW---------- 88

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            + ++ +  +    + + +   A    IP+W  ER       E       A   P  + L
Sbjct: 89  -EELDGLDPKEVIAREKNVSSFAIAQSIPDWMHER-GTLELGEEWKDAMRALNKPAEVFL 146

Query: 181 TVK---FDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASA 230
                    +     L    +    +             +++     F +G++ VQDA++
Sbjct: 147 RTNTLKTTPDELIKTLEKDGINATKVSPDLPNALRLVERKNVFITESFKQGLFEVQDAAS 206

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +   L G      V+D CA  GGK+     ++ +  K+ +LD+   +L++L+    R  
Sbjct: 207 QMVAPLLGIEPGHRVIDACAGAGGKSLHMASMMKNKGKIISLDIHDWKLKELKVRARRDG 266

Query: 288 LYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +   +   +D+     +     D VL+D PCS  G +RR+PD  W    ++I +    Q 
Sbjct: 267 VDVIETRLIDSNKVIKRLYDTADRVLLDVPCSGMGVLRRNPDTKWKLSNEEIDRLHGLQY 326

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L    +  K GG +V++ CSL   ++E+ ++K +        L+              
Sbjct: 327 EILSTYCNMTKKGGQMVYATCSLLPSENEKQIEKFMAEHGKDWTLL-------------- 372

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                            +     G DGF+A  L+R
Sbjct: 373 -------------KQIHVRPDKEGYDGFYAALLKR 394


>gi|332285815|ref|YP_004417726.1| hypothetical protein PT7_2562 [Pusillimonas sp. T7-7]
 gi|330429768|gb|AEC21102.1| hypothetical protein PT7_2562 [Pusillimonas sp. T7-7]
          Length = 451

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 179/457 (39%), Gaps = 55/457 (12%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP- 76
           ++    ++  +L       +        +   +++    +R L    AV   ++  + P 
Sbjct: 18  ILASAQNVQAVLAGRSLSDSLAATPASLRASAQSVAFHVMRRLGIARAVKQILVRRTPPN 77

Query: 77  ------------RKKYSLQQLLRVSVAQILYLDVAD---YAVVDLAVEQAKRDKENRHFA 121
                           +L+     +     +  +     + VVD AV+ A      R + 
Sbjct: 78  PGFDALLLVSLALLDTALEYADDAAPDPAKWRHIPVYAVHTVVDQAVKAADSQHRMRTYK 137

Query: 122 KLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            L+N +LR   RE+     +  +    +   P W+ ++L   Y  +    +  A +    
Sbjct: 138 ALLNGVLRGFIRERSAILAQAGENPEAVFNHPAWWIDQLRRSYPDQWQALLHSANVPGPM 197

Query: 178 -IDLTVKFD-----IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
            + +  +       + + A      +           P  +  +PGF +G W VQD +A 
Sbjct: 198 TLRVNQRRSSVPQILASLAEAGIPAVHVRDEAIALLTPRPVHEVPGFEQGWWSVQDLAAQ 257

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
               L      + VLD CAAPGGKTA L   +  ++ ALD  + RLE++  NLDRL L +
Sbjct: 258 QAGLLLPVQPGMRVLDACAAPGGKTAHLLERADVELLALDADQGRLERVTQNLDRLGLNS 317

Query: 291 -----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                      D   +   + FDAVL D PC+++G +RRHPD+ W R + DI K+A  QR
Sbjct: 318 KSVSLCCADAADVPSWWDGRPFDAVLADVPCTASGVVRRHPDIRWLRRSADIAKTAALQR 377

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            ++    + VKPGG ++++ CS+  Q+ E+  +K        + L               
Sbjct: 378 SIVDALWTTVKPGGHMLYATCSIFPQEGEQQAKKFATRHSDAIRLAAPG----------- 426

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                   ++ P   ++        DGFF     +  
Sbjct: 427 --------QLLPLADDQAVSH----DGFFYALFAKTA 451


>gi|228472598|ref|ZP_04057358.1| ribosomal RNA small subunit methyltransferase B [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276011|gb|EEK14767.1| ribosomal RNA small subunit methyltransferase B [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 408

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 155/460 (33%), Gaps = 78/460 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N           +    +    +++             +D+  +   +   +R+ 
Sbjct: 1   MRLHRNLVDAVVDGFMQINNDGLYADKVIERLLKRDKRWG--SKDRAFIAETLYELVRYK 58

Query: 61  PRIDAVLDFVLISSLPRKKYS--LQQLLR-VSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                +       ++   +    +  +LR +++ +  +    +                 
Sbjct: 59  RLYTEIAQEKAPFTVQSSRRVFAVWAVLRGITLPEWYFEGTPE----------------- 101

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                      RR+     EL +  A    +P+W         G+E       A      
Sbjct: 102 -----------RRIKGRFDELSRVRALRESVPDWLDALGVAELGEEAWGEELHALNQQAA 150

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L V     D E    +L      T  +             ++     F +G++ +QDA
Sbjct: 151 VVLRVNTLKIDREALRAQLAKEGYETEPLEGYPDALQLKKRANVFLSEAFKQGLFELQDA 210

Query: 229 SASIPVQ-----LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLR 280
           S+             +  +L V D CA  GGKT     L+    K+ A+D+  ++L++L 
Sbjct: 211 SSQRVAPLLLGAWNPSQGSLKVADCCAGAGGKTLHLAALMGGKGKIVAMDIYPQKLDELS 270

Query: 281 CNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
               R   Y  +   ++       +  FD VL+DAPCS  G +RR+PD  W    + + +
Sbjct: 271 RRAKRNGAYNIETRLIETKYLKRQRGTFDRVLIDAPCSGLGVLRRNPDTKWKLTPEFLEE 330

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q +LL Q    VK GG +V++ CS+   ++E+ VQ  L S                
Sbjct: 331 IRQTQAQLLAQYSLLVKEGGSLVYATCSILPSENEQQVQHFLAS---------------- 374

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                  L  +  I             + G DGF+  ALR
Sbjct: 375 EAGKRFTLVEQHKI-----------SATQGYDGFYMAALR 403


>gi|261856758|ref|YP_003264041.1| Fmu (Sun) domain protein [Halothiobacillus neapolitanus c2]
 gi|261837227|gb|ACX96994.1| Fmu (Sun) domain protein [Halothiobacillus neapolitanus c2]
          Length = 430

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 158/444 (35%), Gaps = 50/444 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ +L  ++   +     L   +   A R + +RD+  ++ +V   LR    +D +L 
Sbjct: 24  QRAAAVLDVILSDGVPSDRALQHCFR--AERQMGKRDRAQLQTLVFFVLRHWRLLDELLG 81

Query: 69  ---FVLISSLPRKKYSLQ--QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
                + S+L R   ++    LL  ++A++    V     +D+    A+     R   + 
Sbjct: 82  VPPGEVASALGRVGMAVHLAGLLDETLAEL--TGVVARPQIDMVERIARSSPAKRFGLRD 139

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
            +      +          A ++  P   +        +     +    +    I     
Sbjct: 140 EDMARLEAAFGSDAAAVAKALLARAPVDIRVNSAVTEPRALAETLLALGLESTPIPGLPN 199

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                                     + + SL  +  G + +QDA +   V+     +  
Sbjct: 200 GLR-------------------LSDNKPLTSLDAYHAGAFEIQDAGSQWIVEACQAQSGQ 240

Query: 244 SVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLDLCA  GGK    A+ +     V A D    RL +L     R      +   +    
Sbjct: 241 HVLDLCAGAGGKSLGLAEAVGEQGHVLACDTEAERLARLPERSARAGWRNIECQPIADSA 300

Query: 301 YCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 +  FD VL+DAPCS +GT RRHP++       D+      Q +LL  G+   K 
Sbjct: 301 DPELQRRGPFDRVLIDAPCSGSGTWRRHPELRQI--PPDLEALCATQAQLLDDGVRLTKT 358

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            G+++++ CSL ++++E  +   L   P          A   +          G  RI P
Sbjct: 359 DGLLIYATCSLWREENEMQIASFLARHPDW------RVAELPAGMTHALTVVAGMARIRP 412

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
           D+         G DGFF   L+R 
Sbjct: 413 DIQ--------GSDGFFFCVLQRK 428


>gi|255081408|ref|XP_002507926.1| predicted protein [Micromonas sp. RCC299]
 gi|226523202|gb|ACO69184.1| predicted protein [Micromonas sp. RCC299]
          Length = 592

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 125/323 (38%), Gaps = 34/323 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP 199
           A       +  +   + +     + + +A  +   + L            A  L    + 
Sbjct: 166 ATYYGYNTFLIQYFLDTFSVAETMELLEANETQRPVTLRTNTLKCRRRELAASLINRGVN 225

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +P       +   VLD+ AA
Sbjct: 226 LDPIGKWSKVGLLVYDSRVPIGATPEYMAGHYMLQSASSFLPCMALAPQDGERVLDVAAA 285

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307
           PGGKT  L   + +   + A +  K+RL  L  NL R+      +   D           
Sbjct: 286 PGGKTTYLAALMRNTGMIFANEFQKKRLSSLVANLQRMGCTNATVCNYDGRQLPKVLGHV 345

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  ++   DI K A  Q++LL+  I       K GG VV+
Sbjct: 346 DRVLLDAPCSGTGVIAKDSSVKVSKSEADINKCAHLQKELLVAAIDCCDANSKTGGYVVY 405

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-----DMAMALSPEGWIRITPD 418
           S CS+  +++E V+  +L+     V+LVP    + +             S E   R  P 
Sbjct: 406 STCSITVEENEAVLDYILKKR--DVKLVPTGLEFGRPGFTSYRGKNFHPSVEKSRRFYPH 463

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           +          MDGFF   +++L
Sbjct: 464 V--------HNMDGFFVAKIKKL 478


>gi|160895962|ref|YP_001561544.1| sun protein [Delftia acidovorans SPH-1]
 gi|160361546|gb|ABX33159.1| sun protein [Delftia acidovorans SPH-1]
          Length = 462

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 176/457 (38%), Gaps = 52/457 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +  L  V+ +  S   +L                +  V+A++   LR L R  A+   
Sbjct: 30  AVAQCLQSVL-EGQSSRSVLARVAQPL---------RPGVQALLFQVLRQLGRAQALQKQ 79

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +   + P +  +L                  + +V+  VE AK+    R  +  +N+ LR
Sbjct: 80  LASRNPPPRVSALLNTALALAWDESRAPYPPFTLVNQTVEAAKQ-GPTRAQSGFINACLR 138

Query: 130 RVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLT-VK 183
           R  RE+         +   +   P W+  RL   +       +      P   + +   +
Sbjct: 139 RFLRERDALVAATDDQPQAVWNHPAWWIARLRKDHPDHWQAILQANNEQPPMTLRVNRQQ 198

Query: 184 FDIETWAHKLNA----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF-- 237
            D +++   L A     +         +    + SLPGF EG+  VQDA+A +   L   
Sbjct: 199 TDRQSYQAALQAMDVPSLAVADSGLQLQQALPVQSLPGFDEGLASVQDAAAQLAAPLLLQ 258

Query: 238 ----GTLNNLSVLDLCAAPGGKTAQLIVSGAKVT----ALDVSKRRLEKLRCNLDRLHLY 289
                    L VLD CAAPGGKTA L+   A  T    AL++   R  ++   L RL L 
Sbjct: 259 GLEQPAGRALRVLDACAAPGGKTAHLLEYAAPQTLEVTALEIDAERAARIADTLGRLRLQ 318

Query: 290 A-EDIIEMDAFDYCPKKLF-----DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           A   + +    D            DA+L+DAPC+++G +RR PDV W R   D+ + A  
Sbjct: 319 ARVVVADASRPDQWFDAQCGGQRFDAILLDAPCTASGIVRRQPDVRWLRRESDVRQLAEI 378

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +LL      ++PGG +++  CS+ +++ E  VQ  +  +     L           D 
Sbjct: 379 QARLLDTLWPLLQPGGRLLYCTCSVFREEGEAQVQAFVTRNSEARTLAAPGHLIPGKADK 438

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           A  L+                      DGFF   L++
Sbjct: 439 AGMLADN---------------ALGDHDGFFYALLQK 460


>gi|189348997|ref|YP_001944625.1| Sun protein [Burkholderia multivorans ATCC 17616]
 gi|189333019|dbj|BAG42089.1| Sun protein [Burkholderia multivorans ATCC 17616]
          Length = 467

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 101/476 (21%), Positives = 178/476 (37%), Gaps = 57/476 (11%)

Query: 2   KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
            SG  ARL +  +    L             +R+  +L   L   +   A    +   + 
Sbjct: 11  SSGRAARLSALRVAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMASGAQALA-RG 69

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV--------SVAQILYLDVA 99
             + +   T+R L  +D ++  ++  + P   +++              +          
Sbjct: 70  ATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLACALALLLDADGEAAY-------P 122

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKER 155
            + VVD AV      +E      +VN++LRR  RE+      +            W+ + 
Sbjct: 123 PFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAMHADPVAQWNYRAWWIDA 182

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKEL 208
           ++  +       ++        + L V     +    L                      
Sbjct: 183 VKRAWPDAWQAILAAGDRQGP-LTLRVNARRTSVDAYLGTLRDNGIEAAAIGRHAVRLAS 241

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVT 267
              +  +PGFA+GV  VQDA A +  +  G  + +  LD CAAPGGKT  ++  + A+V 
Sbjct: 242 ALPVERIPGFADGVVSVQDAGAQLAAEWLGARDGMRALDACAAPGGKTGHILELADAEVV 301

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRR 324
           AL+    R  ++  NL RL L A D+   D      +   + FD +L D PCS++G +RR
Sbjct: 302 ALESDASRATRIGENLARLSL-AADVRVGDAGAPDAWYDGRPFDRILADVPCSASGIVRR 360

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           HPD+ W R   DI      QR++L      VKPGG +++  CS+  ++ E+  +    + 
Sbjct: 361 HPDIRWLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAAC 420

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              V L        ++                      +   ++  DGFF    ++
Sbjct: 421 EDAVRLDAPGQLLPRAASGGAGSE----------GAAGVPDPTTDHDGFFYARFQK 466


>gi|332876864|ref|ZP_08444618.1| putative ribosomal RNA small subunit methyltransferase B
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685147|gb|EGJ57990.1| putative ribosomal RNA small subunit methyltransferase B
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 398

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 151/445 (33%), Gaps = 69/445 (15%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
                L  +  +      +++             RD+  V   +   +R+      + + 
Sbjct: 3   AVIEGLGFIFTENQYADKVVEKLLKKDKRWG--ARDRAFVAETIYDIVRWKRLYAEIAEV 60

Query: 70  VLISSLPRKKYSLQQLLRV-SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                   + +S+  L R+ +V                     K            ++  
Sbjct: 61  Y-------EPFSIHNLRRLFAVW-----------------ATLKGVALPDWGNYFEDTPT 96

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
           RR+  +  EL +       +P+W     E   G+        +  S   + L V      
Sbjct: 97  RRIKGKFDELSKIRKYRESVPDWLDALGEQELGEALWTDELHSLNSLAPVVLRVNTLKIS 156

Query: 186 IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFG- 238
            +     L    + +  ++            +I     F +G++ VQDAS+         
Sbjct: 157 RDRLQQLLREEGVESYPLQQYPDALQLVERSNIFKSQSFKDGLFEVQDASSQKVAPFMQI 216

Query: 239 TLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
             +   ++D CA  GGKT  L     +  ++ A+D+ +++L++L+    R   +  +   
Sbjct: 217 DNSVKRIIDTCAGAGGKTLHLATLLQNKGQIIAMDIYEQKLQELKRRARRNGAFNIETKL 276

Query: 296 MDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +D       +   D VL+DAPCS  G +RR+PD  W    + + +    Q+++L Q    
Sbjct: 277 IDPKQLKRMQGSADRVLIDAPCSGLGVLRRNPDAKWKLQPEFLDQIRTTQQEILQQYSKL 336

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           +K GG +V++ CS+   ++ + V   L   +    +L      +                
Sbjct: 337 LKKGGKLVYATCSVLPSENHQQVATFLASEAGKDFKLEAEEVIFA--------------- 381

Query: 414 RITPDMLEKIDGVSSGMDGFFAVAL 438
                         SG DGF+   L
Sbjct: 382 ------------HQSGYDGFYMARL 394


>gi|14591177|ref|NP_143253.1| proliferating-cell nucleolar protein p120 [Pyrococcus horikoshii
           OT3]
 gi|3257797|dbj|BAA30480.1| 315aa long hypothetical proliferating-cell nucleolar protein p120
           [Pyrococcus horikoshii OT3]
          Length = 315

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 135/302 (44%), Gaps = 17/302 (5%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
               W +  +      E+ L       +       +   +     +   V     G  L 
Sbjct: 24  YFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLT 83

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
             P SI S P F  G+ ++Q+AS+  P           V D+ AAPGGKT+ L   + + 
Sbjct: 84  REPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRND 143

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTI 322
             + A DV + RL + R NL RL +    +    +       + FD +L+DAPC+ +GTI
Sbjct: 144 GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTI 203

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            ++P+  W R  DDI      Q +LL +G+  +KPGGI+V+S CSL+ +++E V+Q  L 
Sbjct: 204 HKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD 263

Query: 383 SSPIPVELVPLNSAYWKSI-DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +    VEL+PL            + LS E     R+ PD+            GFF   +R
Sbjct: 264 NF--DVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDV--------HETSGFFIAKIR 313

Query: 440 RL 441
           +L
Sbjct: 314 KL 315


>gi|291190482|ref|NP_001167121.1| RNA methyltransferase NOL1 [Salmo salar]
 gi|223648240|gb|ACN10878.1| RNA methyltransferase NOL1 [Salmo salar]
          Length = 747

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 128/319 (40%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           +       +  ++L + +    ++   +A      + +            A  L    + 
Sbjct: 269 STYYSYNNFLIDKLLDIFPVSELIDFLEANEIQRPVTIRTNTLKTRRRDLAQALINRGVN 328

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV         +VLD+ +A
Sbjct: 329 LDPLGKWSKVGLVIFDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGETVLDMSSA 388

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   + A D S  RL+ +  N+ RL +    I   D   +      F
Sbjct: 389 PGGKTTYMAQLMRNTGVIVANDASADRLKSVVGNIHRLGVTNSMICNYDGRQFPKVMGGF 448

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363
           D VL+DAPCS TG I + P V  ++D  DI++ A  Q++L+L  I  V      GG +V+
Sbjct: 449 DRVLLDAPCSGTGVISKDPAVKTSKDESDILRLAHLQKELILAAIDSVNAESPSGGYLVY 508

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
             CS+  +++E VV   L+   + +    L+             +     R  P   +  
Sbjct: 509 CTCSIMVEENEWVVDYALKKRNVKLVQTGLDFG-------KEGFTRFKERRFHPSLKLSR 561

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    S  MDGFF   L++
Sbjct: 562 RFYPHSHNMDGFFVAKLKK 580


>gi|213405703|ref|XP_002173623.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275]
 gi|212001670|gb|EEB07330.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275]
          Length = 617

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 28/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                   +  E+L   +     +   +A  +P  + +       +    A  L    + 
Sbjct: 233 CTYYGYSRFLAEKLFEMFPVSEAIEFFEANETPRPMTIRTNTLKTNRRELAQALINRGVN 292

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I        ++ +    I + P +  G + +Q AS+ +PV       +  +LD+ +A
Sbjct: 293 LEPIGKWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMSSA 352

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306
           PGGK   +     +   + A D +K R++ L  N+ RL +    +   D   +  +    
Sbjct: 353 PGGKVTYIAALQKNSGVIFANDSNKARIKALSANIHRLGVRNTIVCNYDGRKFPEEVLGG 412

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD V++DAPCS TG I +   V   +   D       QR+LLL  I  V    K GG +V
Sbjct: 413 FDRVMLDAPCSGTGVIHKDQSVKANKTAHDFDMLGHLQRQLLLSAIDSVDAESKTGGYIV 472

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--ML 420
           +S CS+   + E V+Q  L+  P  V+LV     + +        +     R  P   + 
Sbjct: 473 YSTCSITVDEDEAVIQYALKKRPN-VKLVSTGLEFGR-----EGFTRYREKRFHPSLKLT 526

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
            +       +DGF+   L++L
Sbjct: 527 RRYYPHVHNIDGFYVAKLKKL 547


>gi|332159596|ref|YP_004424875.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2]
 gi|331035059|gb|AEC52871.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2]
          Length = 309

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 135/302 (44%), Gaps = 17/302 (5%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
               W +  L      E+ L       +       +   +     +   V     G  L 
Sbjct: 18  YYQLWGERALRIAEAMEKPLPRCFRVNTLKISIQELTKRLNKKGFQFKRVPWAREGFCLT 77

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
             P SI S P F  G+ ++Q+AS+  P        N  V D+ AAPGGKT+ L   + + 
Sbjct: 78  REPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPNEIVADMAAAPGGKTSYLAQLMENK 137

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTI 322
             + A DV + RL + R NL RL +    +    +         FD +L+DAPC+ +GTI
Sbjct: 138 GIIYAFDVDEDRLRETRLNLSRLGVLNVVLFHSSSLHIDELGVEFDKILLDAPCTGSGTI 197

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            ++P+  W R  +DI      Q K++ + +  +KPGGI+V+S CSL+ +++E V+Q VL 
Sbjct: 198 HKNPERKWNRTIEDIKFCQGLQMKMIEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLD 257

Query: 383 SSPIPVELVPLNSAYWKSI-DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +    VEL+PL            + LS E     R+ PD        +    GFF   +R
Sbjct: 258 NF--DVELLPLKYGEPALTNPFGVELSEEIRNARRLYPD--------THRTSGFFIAKIR 307

Query: 440 RL 441
           +L
Sbjct: 308 KL 309


>gi|161526289|ref|YP_001581301.1| sun protein [Burkholderia multivorans ATCC 17616]
 gi|160343718|gb|ABX16804.1| sun protein [Burkholderia multivorans ATCC 17616]
          Length = 488

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 101/476 (21%), Positives = 178/476 (37%), Gaps = 57/476 (11%)

Query: 2   KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47
            SG  ARL +  +    L             +R+  +L   L   +   A    +   + 
Sbjct: 32  SSGRAARLSALRVAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMASGAQALA-RG 90

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV--------SVAQILYLDVA 99
             + +   T+R L  +D ++  ++  + P   +++              +          
Sbjct: 91  ATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLACALALLLDADGEAAY-------P 143

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKER 155
            + VVD AV      +E      +VN++LRR  RE+      +            W+ + 
Sbjct: 144 PFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAMHADPVAQWNYRAWWIDA 203

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKEL 208
           ++  +       ++        + L V     +    L                      
Sbjct: 204 VKRAWPDAWQAILAAGDRQGP-LTLRVNARRTSVDAYLGTLRDNGIEAAAIGRHAVRLAS 262

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVT 267
              +  +PGFA+GV  VQDA A +  +  G  + +  LD CAAPGGKT  ++  + A+V 
Sbjct: 263 ALPVERIPGFADGVVSVQDAGAQLAAEWLGARDGMRALDACAAPGGKTGHILELADAEVV 322

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRR 324
           AL+    R  ++  NL RL L A D+   D      +   + FD +L D PCS++G +RR
Sbjct: 323 ALESDASRATRIGENLARLSL-AADVRVGDAGAPDAWYDGRPFDRILADVPCSASGIVRR 381

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           HPD+ W R   DI      QR++L      VKPGG +++  CS+  ++ E+  +    + 
Sbjct: 382 HPDIRWLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAAC 441

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              V L        ++                      +   ++  DGFF    ++
Sbjct: 442 EDAVRLDAPGQLLPRAASGGAGSE----------GAAGVPDPTTDHDGFFYARFQK 487


>gi|158292802|ref|XP_314123.4| AGAP005221-PA [Anopheles gambiae str. PEST]
 gi|157017164|gb|EAA44543.4| AGAP005221-PA [Anopheles gambiae str. PEST]
          Length = 824

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 133/335 (39%), Gaps = 28/335 (8%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK--- 183
             R        L + +       ++F   L   +    +L   +A      + +      
Sbjct: 318 PNRSRCEYIDLLRRDLCLYYSYNDFFMGLLMEIFSPNELLEFLEASEIQRPVTIRTNSLK 377

Query: 184 FDIETWAHKLNAVM--------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 A  L                G+ +      + + P +  G + +Q  S+ +PV 
Sbjct: 378 TRRRDLAQALINRGINLDPIGKWSKEGLVVYTSQVPLGATPEYLAGHYMLQGGSSMLPVM 437

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                 N  +LD+CAAPGGK++ +   + +   +   D +K RL  +  N  RL +    
Sbjct: 438 ALAPEENERILDMCAAPGGKSSHIAALMKNTGVLFVNDANKERLHAVLGNFHRLGIQNAV 497

Query: 293 IIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           I  MD   Y      FD VL+DAPC+ +G I + P V  T++  D+ +    QR+LLL  
Sbjct: 498 ITCMDGVKYGNIMKGFDRVLLDAPCTGSGVISKDPSVKATKNEIDVQRCFNLQRRLLLTA 557

Query: 352 ISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           I  +      GG +V+S CS+  Q++E V+   L+     V LVP    +         +
Sbjct: 558 IDCLSASSPTGGYLVYSTCSILPQENEWVIDFALKRR--NVRLVPTGLDFGV-----EGM 610

Query: 408 SPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440
           +  G  R  P M    +    +  +DGFF   L++
Sbjct: 611 TNFGAHRFHPTMKLTRRFYPHTHNLDGFFVAKLQK 645


>gi|11499621|ref|NP_070863.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648496|gb|AAB89215.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
           fulgidus DSM 4304]
          Length = 324

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 129/320 (40%), Gaps = 28/320 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      E+   R  + +  +    I  A    +   + +     D +    +L +    
Sbjct: 16  AVKYGYDEFIVRRWLH-FFGDETEDIIRAFEEGIPKYIRINTLKIDEKGLLERLESRGFK 74

Query: 200 ------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                      + E P SI + P +  G ++V D S+ IP           V+DL A+PG
Sbjct: 75  LKKTEVPYCFEVVEEPYSIGATPEYLMGYYYVMDKSSCIPPLALEPKPGEVVVDLAASPG 134

Query: 254 GKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDA 309
           GKT     L+ +   V A++  K RL+ L  N++R+      +I +D           D 
Sbjct: 135 GKTTFLSMLMENKGAVIAVEPQKERLQPLIDNINRMGAMNVAVINVDGRRVPAMGIKADR 194

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPC+  G I + P     R  +DI+  +  QR+L+L     +K GG++V+S CSL 
Sbjct: 195 VLLDAPCTGEGIIHKDPSRKTDRGKEDILFCSSLQRELVLAAFDCLKEGGVMVYSTCSLT 254

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
            +++E VV  +L      VE +           +   +S     R  P            
Sbjct: 255 PEENEFVVDFLLERRKGVVEEIEWGDEALALPGVKNEVSKA--RRFYPH--------RHQ 304

Query: 430 MDGFFAVALRRL----IQPK 445
             GFF   +R++     +P+
Sbjct: 305 CSGFFVARIRKVGDSKAKPE 324


>gi|327283575|ref|XP_003226516.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
           [Anolis carolinensis]
          Length = 707

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      ++   ++ + +    ++   ++   P  + L            A  L    + 
Sbjct: 277 AAYYSYSDFLIGKMMDLFPLSELVDFLESNEVPRPVTLRTNTLKTRRRDLAQALINRGVN 336

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV       N  +LD+C A
Sbjct: 337 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGQYMLQGASSLLPVMALAPQENERILDMCCA 396

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307
           PGGKT+ +   + +   + A D +  RL  +  NL RL +    +   D   +      F
Sbjct: 397 PGGKTSYIAQLMKNTGVILANDSNADRLHSVVGNLHRLGVTNTVVSHCDGRQFPKVLGGF 456

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363
           D VL+DAPCS TG I + P V   +D  DI++ A  Q++L+L  I  V      GG +V+
Sbjct: 457 DRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELILSAIDSVNAASETGGYIVY 516

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++E VV   L+     V LVP    + K        +     R  P +    
Sbjct: 517 CTCSVMVEENEWVVDYALKKR--NVRLVPTGLDFGK-----EGFTRFKERRFHPSLKSTR 569

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF   L++
Sbjct: 570 RFYPHTHNMDGFFVAKLKK 588


>gi|307182612|gb|EFN69780.1| Putative RNA methyltransferase NOL1 [Camponotus floridanus]
          Length = 696

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 133/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                   +  E+L   +  + +L   +A      + +            A  L +  + 
Sbjct: 377 CTYYSYNNFLMEKLMQIFPLDELLEFLEASEVERPMTIRTNTLKTRRRDLAEALISRGVN 436

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                + + P +  G + +Q A++ +PV +     N  +LD+CAA
Sbjct: 437 LDPIGKWTKVGLVVYSSQVPMGATPEYLAGHYIIQGAASFLPVMVLEPRENERILDMCAA 496

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A DV+K RL+ +  NL R+ +    I   D   +      F
Sbjct: 497 PGGKTSHIAALMKNTGILFANDVNKDRLKAVVGNLHRIGVVNSIICNYDGRQFPTIMKGF 556

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363
           D VL+DAPC+ TG I +   V   ++  DI +    QR+LLL  I  V      GGI+V+
Sbjct: 557 DRVLLDAPCTGTGVIAKDLSVKTNKEEVDIQRCCTLQRELLLAAIDCVNARSETGGIIVY 616

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
           S CS+  +++E ++   L+     V+L+P    +      A   +     R  P   + +
Sbjct: 617 STCSILPEENEWIIDYALKKR--NVKLLPTGLEFG-----ADGFTSYRQHRFHPSLKLTK 669

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +       M GFF   L++
Sbjct: 670 RYYPHVHNMYGFFVAKLKK 688


>gi|167521191|ref|XP_001744934.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776548|gb|EDQ90167.1| predicted protein [Monosiga brevicollis MX1]
          Length = 585

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 126/320 (39%), Gaps = 28/320 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  +   ER    +G + ++   +A      + +            A  L    + 
Sbjct: 143 CFYYGYNDCMMERFMQLFGLDELIEALEANEVERPVTIRTNTLKTRRRDLAQALINRGVS 202

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + VQ AS+ +PV     L N  VLD+ AA
Sbjct: 203 LDPVGKWSKVGLVIFESSVPIGATPEYLAGHYLVQSASSFLPVMALSPLPNEKVLDMAAA 262

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307
           PGGKT  +   + +   V   D +K R + L  N+ RL      I   D  ++      F
Sbjct: 263 PGGKTTHMAAMMKNTGMVVVNDFNKARTKSLFGNIHRLGCTNTVICNYDGREFPKVLGGF 322

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS +G I + P     +  DD ++ +  Q++L+L  I  V    K GG +V+
Sbjct: 323 DRVLLDAPCSGSGVIAKDPGAKNNKSEDDFMRCSTLQKELILSAIDSVDANSKTGGFIVY 382

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR   + +    L+             +     R  P  +   
Sbjct: 383 STCSIMVDENESVVDYALRKRNVKLVDTGLDFGRP-------GFTNFRGKRFHPTLEKTR 435

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +    +  MDGF+   L++L
Sbjct: 436 RYYPHAHNMDGFYVAKLQKL 455


>gi|332185131|ref|ZP_08386880.1| NOL1/NOP2/sun family protein [Sphingomonas sp. S17]
 gi|332014855|gb|EGI56911.1| NOL1/NOP2/sun family protein [Sphingomonas sp. S17]
          Length = 395

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 153/458 (33%), Gaps = 85/458 (18%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISL----TCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  ++    +       L+   +    +     +D+  VR +V  
Sbjct: 1   MTP--AARTQAAIELLDAIIASAAAGGAAADTLIARYFATRRYAG--SKDRRAVRELVYA 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R                +P    +   +L ++               DL    A    
Sbjct: 57  AIRQAG------------PVPASGRA--AVLALA---------------DLDPALAVNFD 87

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            + H    +++   R +                P W  E L              A I  
Sbjct: 88  GSPHGPAPIDAAEPRAAGGVA------------PAWLVEALGQSGL---TETQQAALIDR 132

Query: 176 LYIDLTVK---FDIETWAHKL-NAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASA 230
             +D+ +       E    +  +A   P   + L+      I     +  G+  VQD  +
Sbjct: 133 APLDVRINSLATTREAVLAEWPDATPTPLAPLGLRLPNGTPIEQSDLYRAGLIEVQDEGS 192

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +            ++DLCA  GGKT Q+   + +   + A D+ + RL++L    +R  
Sbjct: 193 QLVGAALAPQPGEWLVDLCAGAGGKTLQIGAAMDNRGALLACDIDRARLQRLAPRAERAG 252

Query: 288 LYAEDIIEMDA-----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           +   +   ++               D VL+DAPCS TGT RR+P+  W    + + +   
Sbjct: 253 VTIVESRLLNPGREREMLSDWIAKADGVLIDAPCSGTGTWRRNPEARWRLTPERLDRLRG 312

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q +++  G   VKPGG +V+  CSL   +  + +   L S P      P          
Sbjct: 313 MQAQVMSVGADLVKPGGRMVYVVCSLLDAEGSDQIAAFLESHPGWSVEAPAQVIG----- 367

Query: 403 MAMALSPEGWIRITPD-MLEKIDGVSSGMDGFFAVALR 439
                        TP     ++D  + G DGFF   LR
Sbjct: 368 -------------TPHGTGYRLDPATHGTDGFFVACLR 392


>gi|163741069|ref|ZP_02148461.1| NOL1/NOP2/sun family protein [Phaeobacter gallaeciensis 2.10]
 gi|161385422|gb|EDQ09799.1| NOL1/NOP2/sun family protein [Phaeobacter gallaeciensis 2.10]
          Length = 403

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 146/443 (32%), Gaps = 60/443 (13%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L  ++         L      S F     +D+  VR  V   LR L    A+ 
Sbjct: 7   RQAAIEILDHIL-TGEPAEKALTAWARRSRFAG--SKDRAAVRDHVFAALRCLRSYAALG 63

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                  +     + +Q L +     L  +  D A +   V  A    E    A +  + 
Sbjct: 64  GGGGAGEISDSNTTGRQ-LMLGA---LRAEGVDVAEIFNGVGHAPAPLEPAEEAAISTAP 119

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVK-FD 185
                        +      IP+W         G     A          ++ +  +  D
Sbjct: 120 -----------QMQPTEALDIPDWLWPAFAASLGDAAEAAARALQQRAPVHLRVNQRKTD 168

Query: 186 IETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +     L+   +             + E    + +   +  G+  +QDA++   ++   
Sbjct: 169 RDAALIALSEEGILAEAHPAADTALSVTEGARKLRNSSAYLTGLVELQDAASQAVIEALP 228

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
             +   VLD CA  GGK+  +   G     A D++ +R++ L    DR    A  ++  D
Sbjct: 229 LADGQRVLDFCAGGGGKSLAIAARGNLAVFAHDIAPQRMKDLPARADRAGA-AITVLAPD 287

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K  FD VL DAPCS +G+ RR P+  W      +      Q ++L      V P
Sbjct: 288 DV--AAKAPFDLVLCDAPCSGSGSWRRAPEGKWRLTQARLDDLCQTQAQILHNASRLVAP 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG + ++ CS+   ++ + V   L  +P                     L  +   ++  
Sbjct: 346 GGTLAYATCSMLNAENGDQVAAFLARNPNW------------------QLQQDHGWQVH- 386

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                      G DGF+   L R
Sbjct: 387 ----------GGTDGFYVAVLSR 399


>gi|283856450|ref|YP_163055.2| Fmu (Sun) domain-containing protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775454|gb|AAV89944.2| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 408

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 144/462 (31%), Gaps = 81/462 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  ++     +  +   L+   +    +     +D+  +R++V  
Sbjct: 1   MIP--QARVEAAIELLDQIIQAVRDEGSAADRLISQYFKTRRYAG--SKDRAAIRSLVYR 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R +   D  ++         +  +   LL         +            E AK  +
Sbjct: 57  AIREIG--DCPINGRAAMIQLAQNDAELALLFDG-----SMRAPAPISDKEFAEAAKISQ 109

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N                              +P W  E++             +A +  
Sbjct: 110 KNTSL---------------------------LPAWLAEKMAASDIDTA---EQNALLGR 139

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASA 230
             +D+     +      L A         L           +   P +  G   +QDA +
Sbjct: 140 APLDIRFNPHLTDIDTVLAAFPEGQVISGLPYAVRLPEGTKVDQSPLWKSGAIEIQDAGS 199

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEKLRCN 282
                +    + + V+DLCA  GGK         A    +   + A D  + RL +L+  
Sbjct: 200 QWASSICQAQSGMKVIDLCAGAGGKSLALASDMLANNNAAKLDLIACDTDRNRLSRLQPR 259

Query: 283 LDRLHLYAEDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            +R  L   +   ++               D VL+DAPCS +GT RR+P+  W  +   +
Sbjct: 260 AERAKLPPIEQRLLNPKQENKALGDLAHQADLVLIDAPCSGSGTWRRNPEARWRLNPTRL 319

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    Q  LL      V+P G +V+  CS+   +    +   L   P      P   A 
Sbjct: 320 QRVIDTQSHLLDVASQLVRPNGYLVYVVCSVLDDEGANQITAFLNRHPDWTVENPDIQA- 378

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                        G +R       +   +    DGFF   LR
Sbjct: 379 -------------GCLR---GDGRRFTVLQDKSDGFFVSRLR 404


>gi|39951239|ref|XP_363366.1| hypothetical protein MGG_01292 [Magnaporthe oryzae 70-15]
 gi|145020894|gb|EDK05023.1| hypothetical protein MGG_01292 [Magnaporthe oryzae 70-15]
          Length = 678

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/366 (23%), Positives = 150/366 (40%), Gaps = 36/366 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   V    + A   +E R  A+  N +L+ +                  E+
Sbjct: 241 QMLRTRITDTVRVLE--DFANLSEEGRSRAEYSNQLLKDICAY-----------YGYSEY 287

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             ++L + +      A  +A  +P  + +    ++      A  L    +    +     
Sbjct: 288 LAQKLMDLFPAREAFAFFEANETPRPVVIRTNTLRTSRRDLAQALVNRGVTLEPVGKWSK 347

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ +    + + P +  G + +Q AS+ +PV       N  VLD+ AAPGGKT    
Sbjct: 348 VGLQIFDSNVPLGATPEYLGGHYILQAASSFLPVMALCPQENERVLDMSAAPGGKTTHCA 407

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPC 316
             + +   + A D +K R + L  N+ RL +    +   DA +       FD VL+DAPC
Sbjct: 408 ALMKNTGVIIANDPNKARSKGLIGNIHRLGVKNSIVCNYDAREIPNLIGGFDRVLLDAPC 467

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S TG I + P V   +   D ++    Q++LLL  I   K GG +V+S CS+  +++E+V
Sbjct: 468 SGTGVISKDPSVKTNKTEKDFMQLPHVQKQLLLAAIDATKVGGYIVYSTCSVTVEENEQV 527

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFF 434
           V   L      VEL+     + K        +     +  P   M  +    +  +DGF+
Sbjct: 528 VNYALSRRSN-VELLETGLPFGK-----EGFTSFMGKKFHPSVKMTRRYYPHTYNVDGFY 581

Query: 435 AVALRR 440
               ++
Sbjct: 582 VAKFKK 587


>gi|127513667|ref|YP_001094864.1| Fmu (Sun) domain-containing protein [Shewanella loihica PV-4]
 gi|126638962|gb|ABO24605.1| Fmu (Sun) domain protein [Shewanella loihica PV-4]
          Length = 475

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 160/450 (35%), Gaps = 46/450 (10%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV-LDFV 70
             L    ++ ++    +L   +          +D+ ++R  +    R+   +  + L   
Sbjct: 48  HQLFCQTLQSKLPGDRILADYFRAHKKHG--SKDRRVIRETLFGLFRWHGWLKLIPLKDD 105

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA----KRDKENRHFAKLVNS 126
              ++ ++     QL   +  +          +V      A         +       ++
Sbjct: 106 SQQAITQQ--WFAQLAMTAALEAH----PWLDIVSAWRGFAELDEPAINAHTDSGSDTDA 159

Query: 127 ILRRVSREKIELLQRIAGISII-PEWFKERLENFYGKERVLAISDACISPLYIDLT---- 181
           +  + +  +     ++  ++ + P+WF    +     +  L  S +   P++  L     
Sbjct: 160 LKFKQAILEAAFPAQVFPLTALAPDWFWAHFDQDLEIQERLVSSLSSRPPIWGRLQGISL 219

Query: 182 --VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
              K  +     + +        I L     ++ ++  + EG   +QD  + +   +   
Sbjct: 220 AKAKAKLAQQEIEASGSDYFKDAINLGHKSINLNAVALYNEGKLEIQDLGSQVIGNICAP 279

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRLHLYAE 291
             + +  D C+  GGK+ QL     +          A D+ ++ LE+L     R      
Sbjct: 280 KADETWWDACSGAGGKSLQLRSLMLQQDSEASGSVVASDIRRKPLEELTKRAKRAGFSQI 339

Query: 292 DIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                 +         FD VLVDAPCS TGT RR+PD+ W  D   I   A  Q  +L +
Sbjct: 340 STQPWQSDALPVAAGYFDGVLVDAPCSCTGTWRRNPDMRWLDDASAITDKASLQLDILSR 399

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               V+PGG++V++ CS+   +++EVV+  L   P    L  L   +   +         
Sbjct: 400 ACEAVRPGGVLVYATCSISPVENQEVVEAFLAKRP-DFSLQTLTHPFTNEVTQ------- 451

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + + P          +  DG F   + R
Sbjct: 452 -MLTVLP--------YQADSDGMFVAKMIR 472


>gi|315229812|ref|YP_004070248.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
 gi|315182840|gb|ADT83025.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
          Length = 310

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 28/311 (9%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH----------KLNAVM 197
             + F ER    +G ER + I++A   PL     V                   +   V 
Sbjct: 10  YSKTFAERYYQLWG-ERAIRIAEAMEKPLPRCFRVNTLRTEIPKLTKLLNKKGFQFKRVP 68

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
               G  L   P SI S P +  G+ ++Q+AS+  P           V D+ AAPGGKT+
Sbjct: 69  WAKEGFCLTREPFSITSTPEYLSGLLYIQEASSMYPPIALEPKPGEVVADMAAAPGGKTS 128

Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVD 313
            +   + +G  + A DV + RL+++R NL RL +    +    +         FD +L+D
Sbjct: 129 YMAQLMKNGGIIYAFDVGEERLKEMRLNLSRLGVTNVVVFHKSSLYMGELGIEFDKILLD 188

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC+ +GTI ++P+    R  DDI      Q K++   +  +K GG++V+S CSL+ +++
Sbjct: 189 APCTGSGTIHKNPERKSNRTLDDIKFCQNLQMKMIKVALENLKKGGVLVYSTCSLEPEEN 248

Query: 374 EEVVQKVLRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           E VVQ VL +    VEL+PL     A  K   + ++   +   R  PD          G 
Sbjct: 249 EFVVQWVLDNF--EVELLPLRYGEPALVKPFGIELSEELKKARRFYPD--------KHGT 298

Query: 431 DGFFAVALRRL 441
            GFF   +R++
Sbjct: 299 SGFFVAKIRKI 309


>gi|302754002|ref|XP_002960425.1| hypothetical protein SELMODRAFT_437511 [Selaginella moellendorffii]
 gi|300171364|gb|EFJ37964.1| hypothetical protein SELMODRAFT_437511 [Selaginella moellendorffii]
          Length = 579

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 130/323 (40%), Gaps = 32/323 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
           A      E+  E     +     +   +A  +P  + L     ++T    L  V++  G 
Sbjct: 175 ASYYGYNEFLAEYFMQMFPVAEAVEFLEANETPRPLSLRTNT-LKTRRRDLAGVLINRGV 233

Query: 203 I------------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                         + +    + + P +  G + +Q AS+ +PV          ++D+ A
Sbjct: 234 NLDPIGKWSKVGLVVYDSQVPVGATPEYMAGHYMLQSASSFLPVMALAPQEKERIVDVAA 293

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---K 304
           APGGKT  +   + +   + A ++  +RL+ L  N+ R+ +    +   D  +      +
Sbjct: 294 APGGKTTYIAALMKNTGLIYANELKVQRLKSLTANIYRMGVTNSVVCNYDGRELPKVLGR 353

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGI 360
              D VL+DAPCS TG + +   V  T+  +DI + A  Q++L+L  I  V      GG 
Sbjct: 354 NSVDRVLLDAPCSGTGIVGKDQSVKLTKSLEDIQRCAFLQKELILAAIDLVDANSSSGGY 413

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM- 419
           +V+S CS+   ++E VV   L+   + V    L       I            R  P + 
Sbjct: 414 LVYSTCSVTVAENEAVVDYALKKRHVKVVPSGLEFGKEGFIRFREK-------RFHPSLA 466

Query: 420 -LEKIDGVSSGMDGFFAVALRRL 441
              +       MDGFF   L++L
Sbjct: 467 NTRRFYPHVHNMDGFFVAKLKKL 489


>gi|326436780|gb|EGD82350.1| hypothetical protein PTSG_03014 [Salpingoeca sp. ATCC 50818]
          Length = 880

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 24/318 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV------ 196
                  E   +RL + +    ++   +A      + +            + A+      
Sbjct: 299 CTYYGYNECMMQRLMDLFPLNELVDALEANEVRRPVTIRTNTLRTRQRDLMQALSNRGVS 358

Query: 197 -----MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + E    I + P +  G + +Q AS+ +PV       N  VLD+ AA
Sbjct: 359 LDSVGNWSKVGLVVFESNVPIGATPEYLCGHYIIQSASSFLPVMALAPQPNERVLDMAAA 418

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   + A D +K R++ L  N+ RL +    +   D   +      F
Sbjct: 419 PGGKTTYIAALMKNTGVLFANDANKARIKSLAANISRLGVTNTVVCNYDGRSFPTVIGGF 478

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D +L+DAPCS +G I +      T+D  D  + +  Q++L+L  I  V    K GG +V+
Sbjct: 479 DRILLDAPCSGSGVISKDASAKNTKDETDFRRCSTLQKELILAAIDSVDANSKTGGYIVY 538

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS+   ++EEVV   LR   + +    L               P+        +  + 
Sbjct: 539 STCSIMVDENEEVVNYALRKRNVKLVDTGLTFGRPGFKSYRGKHFPDTM-----QLTRRF 593

Query: 424 DGVSSGMDGFFAVALRRL 441
                 MDGFF   L++L
Sbjct: 594 YPHVHNMDGFFVAKLKKL 611


>gi|159044194|ref|YP_001532988.1| rRNA (cytosine-C(5)-)-methyltransferase [Dinoroseobacter shibae DFL
           12]
 gi|157911954|gb|ABV93387.1| rRNA (cytosine-C(5)-)-methyltransferase [Dinoroseobacter shibae DFL
           12]
          Length = 392

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 137/420 (32%), Gaps = 50/420 (11%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L   +    S    L        F     +D+  +R +V   LR 
Sbjct: 1   MTP--AARVQGAIEILEAYL-SGQSAEQALSRWCRSHRFAG--SKDRAALRDLVFDALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 +   +               L V       L              A  D  N  
Sbjct: 56  RASYAWLGGGLSARG-----------LMVGA-----LRK---------RGLAPEDLFNGQ 90

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                      +++              +P W   +L++ +G E  L +  A      +D
Sbjct: 91  TYAPFPVTGDEIAQFGQAENMPDDVALDMPGWLFAQLQDSFG-EAALGVCAALQQRAPVD 149

Query: 180 LTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           L V     +      A          V      +R+ E   S+V    F +G+  +QDA+
Sbjct: 150 LRVNTLKASVGQAEEALYEDGIATERVAGVATALRVVEGARSVVRSRAFTDGLVELQDAA 209

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHL 288
           + + V      +   +LD CA  GGK   L           D + +R+  L     R   
Sbjct: 210 SQLAVLRSPVPHKGRILDFCAGGGGKALALAAGSGGCIHVHDANLKRMRDLPDRAARAGA 269

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                  +  ++    + FD V  DAPCS +GT RR P+  WT   D + +    QR +L
Sbjct: 270 D------LRMWNRAEARAFDLVFCDAPCSGSGTWRRSPEAKWTLTPDRLAEYVATQRTVL 323

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 V+PGG +V++ CS+   ++       L++ P    L+  +    ++        
Sbjct: 324 TAAAPLVRPGGFLVYATCSILTVENAAQTAWFLQAFP-AFSLLEASQMLPENPGDGFYFG 382


>gi|171696268|ref|XP_001913058.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948376|emb|CAP60540.1| unnamed protein product [Podospora anserina S mat+]
          Length = 747

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 86/362 (23%), Positives = 139/362 (38%), Gaps = 22/362 (6%)

Query: 92  QILYLDVADYAVVDLAV-EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI-IP 149
           Q+L   + +   V     E A+     R  A+  N +L+ V             +    P
Sbjct: 235 QMLRTRITETIRVLEDFGELAEE---GRDRAEYTNQLLKDVCAYYGYNEFLAEKLMNLFP 291

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209
                         R + I    +     DL           +        G   + +  
Sbjct: 292 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQ-VFDSN 350

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKV 266
             + + P +  G + +Q AS+ +PV       N   LD+ +APGGKT  +   + +   +
Sbjct: 351 VPLGATPEYLAGHYILQAASSFLPVMALCPQENERCLDMASAPGGKTTHMAALMKNTGVI 410

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRH 325
            A D SK R + L  N+ RL +    +   DA ++      FD VL+DAPCS TG I + 
Sbjct: 411 FANDPSKARAKGLIGNIHRLGVRNTIVCNYDAREFPRVMGGFDRVLLDAPCSGTGVIAKD 470

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVL 381
           P V   RD  D  +    Q++L+L  I  V    K GG +V+S CS+  +++E+VV   L
Sbjct: 471 PSVKTNRDEKDFQQLPHLQKQLILAAIDSVNHASKTGGYLVYSTCSVAVEENEQVVAYAL 530

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALR 439
              P  V LV     + K        +        P   +  +       +DGFF    +
Sbjct: 531 SRRPN-VRLVETGLPFGK-----EGFTSFMGKEFHPSLKLTRRYYPHLYNVDGFFVAKFQ 584

Query: 440 RL 441
           ++
Sbjct: 585 KI 586


>gi|242010929|ref|XP_002426210.1| Proliferating-cell nucleolar antigen p120, putative [Pediculus
           humanus corporis]
 gi|212510261|gb|EEB13472.1| Proliferating-cell nucleolar antigen p120, putative [Pediculus
           humanus corporis]
          Length = 730

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 136/338 (40%), Gaps = 24/338 (7%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           K      R+       L + +       E+  E+  N +    +L   +A      + + 
Sbjct: 196 KKFRDENRKRQDYIDLLKRDLCSYYSYNEFLMEKFMNLFELNELLEFLEASEVHRPVTIR 255

Query: 182 VK---FDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230
                      A  L    +    +                I + P +  G + +Q AS+
Sbjct: 256 TNSLKTRRRDLAQALINRGVNLDPLGKWTKVGLVIFSSQVPIGATPEYLAGHYLIQGASS 315

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +PV       N  +LD+C+APGGK + +   + +   + A DV+  R   +  N  RL 
Sbjct: 316 LLPVMALAPRENERILDMCSAPGGKGSHIAAVMKNTGVLVANDVNADRNRAVVGNFHRLG 375

Query: 288 LYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +    I   D          FD VL+DAPC+ TG + + P V  ++D  DI +    Q++
Sbjct: 376 VSNSIICSYDGRKLPTVLKGFDRVLLDAPCTGTGVVAKDPTVKTSKDEKDIQRCINLQKE 435

Query: 347 LLLQGISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
           L+L  I  + P    GG +V+S CS+  +++E VV+  L+     V+LVP    + +   
Sbjct: 436 LILAAIDCLNPNSASGGYLVYSTCSVLVEENECVVEYALKKR--DVKLVPTGLEFGEQGF 493

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +    +       T ++  +    S  MDGFF   L++
Sbjct: 494 VNFRGNR---FHSTMNLTRRYYPHSHNMDGFFVAKLKK 528


>gi|255563570|ref|XP_002522787.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus
           communis]
 gi|223538025|gb|EEF39638.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus
           communis]
          Length = 624

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 132/335 (39%), Gaps = 30/335 (8%)

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
           R      +L   +       ++    L   +    ++ + +AC  P  I L         
Sbjct: 187 RRKDYVEQLKMDLCSYYGYNDFLIGVLVEMFPVNELIELIEACEKPRPICLRTNTLKTRR 246

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFG 238
              A  L    +    +                I + P +  G + +Q A++ +PV    
Sbjct: 247 RDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSANSFLPVMALA 306

Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                 ++D+ AAPGGKT  +   + +   + A ++   RL+ L  NL R+ +    +  
Sbjct: 307 PQEKERIVDMAAAPGGKTTYIAALMKNSGIIYANEIKVPRLKSLTANLHRMGVTNTIVCN 366

Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
            D  +          D VL+DAPCS TG I +   V  ++  DDI K A  Q++L+L  I
Sbjct: 367 YDGRELIKILGHNAVDRVLLDAPCSGTGVISKDESVKTSKSLDDIQKCAHLQKQLILAAI 426

Query: 353 SFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
             V    K GG +V+S CS+   ++E V+   L+     V+LVP    + +   +     
Sbjct: 427 DMVDANSKSGGYIVYSTCSMMVAENEAVIDYALKKR--DVKLVPCGLDFGRPGFIRFREH 484

Query: 409 PEGWIRITPDM--LEKIDGVSSGMDGFFAVALRRL 441
                R  P +    +       MDGFF   L+++
Sbjct: 485 -----RFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 514


>gi|294056140|ref|YP_003549798.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615473|gb|ADE55628.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
          Length = 421

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 157/383 (40%), Gaps = 23/383 (6%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  L+   +        LL+          +S++ +   +      +R   R  A L  
Sbjct: 18  LAVQLMEAYLSADNKADWLLEQL-----PDSISRQIRAASQTRFYGAIRHGHRCRAALKP 72

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
            L          ++ +L V+ A+I         +V  AV++AK+  ++     L+N++LR
Sbjct: 73  HLRKQPR---PRVEAILLVAGAEICTEAEKAPKIVHHAVDRAKQLVKSGEL-GLINALLR 128

Query: 130 RVSREKIELLQRIAGISI-IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           ++              +   P W  +R    +G E    + +         L +    + 
Sbjct: 129 KLPGLLDAQSANDPLSNWSHPSWLVQRWNQEFGSEHCQQLLEWNQQIPQNYLKLYQGTDA 188

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
               L              +PE + +      G+ +++D S  +  +L        +LDL
Sbjct: 189 ---GLPESQWSPFYKLDGPVPEPLKA--ELNRGLAYIKDPSTRLAPELLAPKAGDRILDL 243

Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR-----LHLYAEDIIEMDAFD 300
           CAAPGGK   L   +    ++TA+D+   R+ +LR NL +           +   ++   
Sbjct: 244 CAAPGGKAFDLAKLMQGRGQLTAIDLPGSRINRLRENLAKLESEDFQTEIIEEDVLELNR 303

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD V++DAPCS+TG I+R  DV W     DI   A  Q +LL     FVK GG 
Sbjct: 304 EQLPAPFDCVMLDAPCSNTGVIQRRIDVKWRLRQKDITACAKLQLQLLHSASRFVKNGGR 363

Query: 361 VVFSNCSLDKQDSEEVVQKVLRS 383
           +V+S CS++ +++ EV+ K L S
Sbjct: 364 LVYSTCSIEHEENTEVIDKFLAS 386


>gi|241761711|ref|ZP_04759798.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374019|gb|EER63552.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 408

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 146/467 (31%), Gaps = 91/467 (19%)

Query: 1   MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  ++     +  +   L+   +    +     +D+  +R++V  
Sbjct: 1   MIP--QARVEAAIELLDQIIQAVRDEGSAADRLISQYFKTRRYAG--SKDRAAIRSLVYR 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-----LDVADYAVVDLAVEQ 110
            +R +              +  +   +Q  L  + A++ +     +            E 
Sbjct: 57  AIREIGDC----------PINGRAAMIQ--LAQNDAELAFLFDGSMRAPAPISDKEFAEA 104

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           AK  ++N                              +P W  E++             +
Sbjct: 105 AKISQKNTSL---------------------------LPAWLAEKMAASDIDTA---EQN 134

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWV 225
           A +    +D+     +      L A         L           +   P +  G   +
Sbjct: 135 ALLGRAPLDIRFNPHLTDIDTVLAAFPEGQVISGLPYAVRLPEGTKVDQSPLWKSGAIEI 194

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLE 277
           QDA +     +      + V+DLCA  GGK         A    +   + A D  + RL 
Sbjct: 195 QDAGSQWASSICQAQLGMKVIDLCAGAGGKSLALASDMLANNNAAKLDLIACDTDRNRLS 254

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           +L+   +R  L   +   ++               D VL+DAPCS +GT RR+P+  W  
Sbjct: 255 RLQPRAERAKLPPIEQRLLNPKQEEKALGDLAHQADLVLIDAPCSGSGTWRRNPEARWRL 314

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
           +   + +    Q  LL      V+P G +V+  CS+   +    +   L   P      P
Sbjct: 315 NPTRLQRVIDTQSHLLDVASQLVRPNGYLVYVVCSVLDDEGANQITAFLNRHPDWTVENP 374

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
              A              G +R       +   +    DGFF   LR
Sbjct: 375 DIQA--------------GCLR---GDGRRFTVLQDKSDGFFVSRLR 404


>gi|255020224|ref|ZP_05292293.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970366|gb|EET27859.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
           caldus ATCC 51756]
          Length = 443

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 99/357 (27%), Positives = 153/357 (42%), Gaps = 41/357 (11%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI-IPEWFKERLE 157
            D+AVV+  V  A           LVN++LRR  RE+  L ++I       P+W   RL+
Sbjct: 91  PDFAVVNDWVG-ACALLHKEWARGLVNALLRRYLREREPLEEQIRDAHWNHPQWLVRRLQ 149

Query: 158 NFYGKERVLAISDACISPL-YIDLTVK-FDIETWAHKLNAVMLPTGGIR------LKELP 209
             Y  +    ++        ++ +  +      +A +L    LP             +  
Sbjct: 150 QVYPTQWPDILAANLREAPLWLRVNPQAITPAAYAERLAEASLPAQSHAGLPEALRLDTA 209

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-A 268
             + +LPG+  G   +QD +A     +     +  VLD CAAPGGKT  L+  G +   A
Sbjct: 210 VPVRALPGWERGWVSIQDGAAQRAAHILAPRPDERVLDACAAPGGKTTHLLSFGVRQLTA 269

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRH 325
           LD S+ RLE+LR  L RL L    +   D      +    +FDA+L+DAPC+++G IRRH
Sbjct: 270 LDRSQARLERLRRELQRLQLPLPSLHVADAADVDAWWDGMVFDAILLDAPCTASGVIRRH 329

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           PD+L  R  DD+ +    QR+LL      +KPGG +++  CS+  +++ E +   L    
Sbjct: 330 PDILLRRREDDVERVRHEQRRLLAALWRVLKPGGRLLYCTCSVLPEENGEQIASFLEEHD 389

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPD-MLEKIDGVSSGMDGFFAVALRRL 441
                                       R  P     +      GMDGFF   L ++
Sbjct: 390 DA--------------------------RALPHPQCGQRLPGEEGMDGFFYALLGKI 420


>gi|288932371|ref|YP_003436431.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
 gi|288894619|gb|ADC66156.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
          Length = 328

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 135/311 (43%), Gaps = 21/311 (6%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT-VKFDIETWAHKLNAVMLPT 200
           A      E+   R  N +G+E    + +       YI +  +K   +    +L       
Sbjct: 16  AKKYGYDEFIIRRWVNIFGEEEAAKLVEGMEKVPKYIRVNTIKISEDELVERLEERGFVL 75

Query: 201 GGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
               +    E      SI + P F  G ++V D S+ IP        +  V+D+ A+PGG
Sbjct: 76  NKTEVPFCYEVVEEPYSIGATPEFLMGYYYVMDKSSCIPPIELNPKESDLVVDMAASPGG 135

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAV 310
           K   +   + +   + A++ ++ R+  L  N+ R+ +    ++ M++   +      D +
Sbjct: 136 KATMISMLMKNKGVLIAIEGNEERIPPLIDNIHRMGVMNAIVLRMNSAKFHNLGIKADKI 195

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPC+  G I + P   W+R   DI+     Q+++L  GI  +KPGG++++S CSL  
Sbjct: 196 LLDAPCTGEGIIHKDPTRKWSRGVKDILFCTSLQKQMLEAGIKSLKPGGVLIYSTCSLTP 255

Query: 371 QDSEEVVQKVLRSSPIPVELVPL-NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           +++E V+   L++  I +E V     A  K  D+ ++       R+ P            
Sbjct: 256 EENEFVIDWALKNFEIRLEEVKFGEEALTKIGDVKLSSELRKAKRLYPHKHRCS------ 309

Query: 430 MDGFFAVALRR 440
             GFF   + +
Sbjct: 310 --GFFVAKIVK 318


>gi|326387633|ref|ZP_08209239.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207679|gb|EGD58490.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370]
          Length = 393

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 102/454 (22%), Positives = 160/454 (35%), Gaps = 78/454 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  +L  V+    R+  S   +    +    F  +  +D+  +R +   
Sbjct: 1   MNP--AARVQAAIDILDEVIAAARRQGASADRIAAEWFRQRRF--VGSKDRRAIRDLAWD 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R    I              +      +LR++                          
Sbjct: 57  AIRACGDI----------PADGRA----AILRLA-------------------------S 77

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAISDACI 173
            N   + L +    R     I+  +R A   + P W   RL       +E+   +  A +
Sbjct: 78  GNADLSALFDG--SRYGPAPIDPSERPASGGVAPGWLVRRLTQSGLDEREQAALLDRAPL 135

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
                 L V  D       + A   P              S P FAEG++ VQDA + + 
Sbjct: 136 DLRVNRLKVTRDALLARLPVAAEPGPVPDSLRLASGTPAESWPEFAEGLFEVQDAGSQLA 195

Query: 234 VQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
                     +V+DLCA  GGKT   A  + +  ++ A D+ + RL +L     R     
Sbjct: 196 CTALHAQPGETVIDLCAGAGGKTLALAAAMENRGRLVACDIDRARLSRLPERAARAGAT- 254

Query: 291 EDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            +   +DA              DAVLVDAPCS TGT RR+P+  W    + IV+ A  Q 
Sbjct: 255 VETCLLDAGREREALRGFAGKADAVLVDAPCSGTGTWRRNPEARWRLTPETIVRYARAQA 314

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            +L   +  V+PGG + F  CSL  ++  + V   L   P     VP+++   +      
Sbjct: 315 HVLDLAVELVRPGGRITFITCSLLDEEGADAVGAFLARYPGW-RTVPVDAPIGRGHGPGW 373

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                   R+TP           G DGF+   L 
Sbjct: 374 --------RLTPGH--------DGTDGFYFANLV 391


>gi|282891959|ref|ZP_06300438.1| hypothetical protein pah_c200o131 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498219|gb|EFB40559.1| hypothetical protein pah_c200o131 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 384

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 150/443 (33%), Gaps = 91/443 (20%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             LL   M + + L  ++   +       L  +D+  V   +   +R++  ID   +   
Sbjct: 13  FSLLDFYMEQELPLDLVISRYFKLRK--SLGSKDRAFVAEAIYGMMRWITLIDFFCEENA 70

Query: 72  ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                               +I   LD+                                
Sbjct: 71  SWEKK--------------WEIYQTLDIP------------------------------- 85

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIE 187
                 +           P+   + +   +G E+   I  A  +P    + V     D E
Sbjct: 86  --TLIKDTSIPEHIRFGFPKDLYDLILKSHGIEKGQEICLASNAPAPTTVRVNLLKTDRE 143

Query: 188 TWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           T   + +     +   R     +     +   LP F +G++ VQD  + +  +L      
Sbjct: 144 TLLSQWSEKYQISACSRSSTGIVFHKKINFFELPEFRQGLFEVQDEGSQLISELMQVEPG 203

Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             VLD C+  GGK    A  +    ++   D+ K+ L + +  L R  +    I+  D  
Sbjct: 204 QQVLDYCSGSGGKTLAFAPKMEKRGQIFLHDIRKKILLEAKKRLRRAGVQNSQIVNPDDE 263

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
               K     D VL D PCS  GT+RR+PD+ W    + + +    QR +  + +S++KP
Sbjct: 264 PKLKKLKKQMDWVLADVPCSGIGTLRRNPDMKWKFSEEMLTRLVGQQRTIFEKALSYMKP 323

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            G +V++ CS+  +++++ +   +++  + +                             
Sbjct: 324 EGHIVYATCSILNEENQQQIDHFVKTYDLEIV---------------------------- 355

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
               +       MDGFFA  LR+
Sbjct: 356 GETFQSIPHEGRMDGFFATVLRK 378


>gi|167464610|ref|ZP_02329699.1| 16S rRNA m(5)C 967 methyltransferase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 271

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 22/270 (8%)

Query: 184 FDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
              E    +L    +            +     ++     +A G + +QD S+ +  +L 
Sbjct: 11  HCREELIERLLDEGIQAEASFLAPQGIIITGGGNMALTKEYANGDYSIQDESSMLVAELV 70

Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                + VLD CAAPGGKT      + +   V A D+ + + + ++   +RL L + +  
Sbjct: 71  DPKEGMIVLDCCAAPGGKTTHLAEKMNNKGIVKAFDLYEHKEQLIQEQAERLQLTSVETA 130

Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA     +     FD +L+DAPCS  G IRR PD+ W +   DI +    Q+ LL   
Sbjct: 131 VADARKLGERFNRETFDRILLDAPCSGLGVIRRKPDLKWMKKEQDIEEIRKVQQDLLCAV 190

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +KPGGI+V+S C+++  ++E+ V + L   P  + ++     +    ++ + L   G
Sbjct: 191 PGLLKPGGILVYSTCTVEIAENEDQVNRFLEKHPDFIPVLEPVPGWPP--ELNVQLMNRG 248

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++I P   +         DGFF V LR+ 
Sbjct: 249 MVQIFPQDYQS--------DGFFMVRLRKK 270


>gi|195442109|ref|XP_002068802.1| GK17973 [Drosophila willistoni]
 gi|194164887|gb|EDW79788.1| GK17973 [Drosophila willistoni]
          Length = 866

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 147/376 (39%), Gaps = 35/376 (9%)

Query: 92  QILYLDVADYA-----VVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGIS 146
           +I  L   +        +   +++ K         K      R  S     L   +    
Sbjct: 253 EIFQLPSPEDDEEKDLTIQEVMQRIKDVTLVLSDFKKYRQADRARSEYIDLLRHDLCLYY 312

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--- 203
              E+  E+L + +    ++   +A      + +     ++T    L   ++  G     
Sbjct: 313 SYNEFLMEKLMDMFPLNELMEYLEASEVARPLTIRTN-SLKTRRRDLAGALINRGVNLDP 371

Query: 204 ---------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                     +      + + P +  G + +Q AS+ +PV       N  +LD+C+APGG
Sbjct: 372 LGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSMLPVMALAPQENERILDMCSAPGG 431

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310
           K + +   + +   + A D ++ R++ +  N  RL +    +   D   +      FD V
Sbjct: 432 KGSHIAAIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGFDRV 491

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNC 366
           L+DAPC+ TG + + P V  T+   D+ +    QRKLLL  I  V      GG +V+S C
Sbjct: 492 LLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSSGGYIVYSTC 551

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKID 424
           S+  +++E V+   L+   + +    L+      ++           R  P  ++  +  
Sbjct: 552 SVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFVNFRQH-------RFHPSLNLTRRYY 604

Query: 425 GVSSGMDGFFAVALRR 440
             +  MDGF+   L++
Sbjct: 605 PHTHNMDGFYVAKLKK 620


>gi|67902172|ref|XP_681342.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4]
 gi|40740505|gb|EAA59695.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4]
 gi|259480830|tpe|CBF73828.1| TPA: nucleolar RNA methyltransferase (Nop2), putative
           (AFU_orthologue; AFUA_5G01760) [Aspergillus nidulans
           FGSC A4]
          Length = 788

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 23/319 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  +P  + +    ++ +  + A  L    + 
Sbjct: 280 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 339

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  +LD+ +A
Sbjct: 340 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERILDMASA 399

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  +DA    PK +  
Sbjct: 400 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKAMGG 459

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPC+ TG I + P V   ++  D +     QR+LLL  I  V    K GG +V
Sbjct: 460 FDRVLLDAPCTGTGVIAKDPSVKTNKNERDFLAIPHMQRQLLLAAIDSVNHASKTGGYIV 519

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ VL+  P  V+LV      + S      +      ++T  M  +
Sbjct: 520 YSTCSVTVEENEAVVQYVLKKRPN-VKLVETGLGDFGSPGFTHYMGKHFDAKMT--MTRR 576

Query: 423 IDGVSSGMDGFFAVALRRL 441
                  +DGFF   L+++
Sbjct: 577 YFPHRENVDGFFVCKLKKI 595


>gi|297621733|ref|YP_003709870.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia
           chondrophila WSU 86-1044]
 gi|297377034|gb|ADI38864.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia
           chondrophila WSU 86-1044]
          Length = 393

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 145/440 (32%), Gaps = 88/440 (20%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             LL     + I L   +   + ++    L  +D+  +   +   +R+LP I+ +     
Sbjct: 28  LRLLKSYEGQEIPLDLCIHRYFKENR--SLGSKDRAEIAENIYGMIRWLPLINHLSGTHS 85

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                R +                                                    
Sbjct: 86  SWE-KRLETW---------------------------------------------TGLNP 99

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
              +             P+   +      GKE+   I   C SP    + V     T   
Sbjct: 100 EEYRHNSSIPSHIRYSFPKVLYDLCVAAMGKEKAEEICWECNSPAPTTVRVNRLKATRDK 159

Query: 192 KLNAVMLPTGGIRLKELPESIV--------SLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
            L            +E  E I          LP F  G + VQD  + +   +   L   
Sbjct: 160 LLKTWGKEYQVAPCEEAKEGIRFLKKINFFQLPEFQSGYFEVQDEGSQLLAAMVEALPGQ 219

Query: 244 SVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAF 299
            VLD C+  GGK    AQ +    ++   D+    L + +  L R  +    + +  D  
Sbjct: 220 KVLDYCSGSGGKTLAFAQNMDGKGQIYLHDIRTHILSEAKRRLKRAGIQNAQLLMPDDPK 279

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               KK FD VLVDAPCS TGT+RR+PD+ W    + + +    QR +  Q +S+VKPGG
Sbjct: 280 KKNLKKKFDWVLVDAPCSGTGTLRRNPDMKWKFSEEMLKRLLGQQRTIFEQALSYVKPGG 339

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CS+ KQ++++ V   L + PI +                               
Sbjct: 340 KIVYGTCSILKQENQDQVAHFLNTYPIKLH----------------------------GD 371

Query: 420 LEKIDGVSSGMDGFFAVALR 439
           + +       MDGFF    +
Sbjct: 372 IFQSYPAREKMDGFFGACFQ 391


>gi|325115470|emb|CBZ51025.1| ribosomal RNA small subunit methyltransferase F (RRNA(Cytosine-C)),
           related [Neospora caninum Liverpool]
          Length = 803

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 130/356 (36%), Gaps = 26/356 (7%)

Query: 112 KRDKENRHFAKLV-NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           +++  N+       +  +    +   +L   I           E     +  +   A  +
Sbjct: 245 RKNLGNQRSKDTDADGGVVTRRQLMDKLAADIVTYYQYRPELVEYFLQLFKPQEAYAFFE 304

Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFA 219
           A      + L            A  L A       +                + + P + 
Sbjct: 305 ANEENRPMTLRTNSLKTRRRDLAAALIARGCNVDPLGDWTKVGLKVYESSVPVGATPEYL 364

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRL 276
            G + +Q A++ IPV          V+D+ AAPGGKT  +     +   + A D  K R 
Sbjct: 365 AGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPGGKTTYIAQLLKNEGILFANDAKKERC 424

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
             L  NL RL +    +  +D           D  L+DAPC+ +G I R P +   R  +
Sbjct: 425 TSLMANLHRLGVTNCIVSCVDGRTLPTILPPMDRALLDAPCTGSGIIARDPSIKVKRKPE 484

Query: 336 DIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
           D  + +  Q++LL   +  V      GG +V+S CS+  +++E+VV  +L +    V+LV
Sbjct: 485 DFAEHSKLQKQLLCAAVDAVNADSPTGGYIVYSTCSISVEENEQVVDYILTARK--VKLV 542

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI--QPK 445
           PL       +          +    P    +     +  DGFF    ++L   +P+
Sbjct: 543 PLGVDI--GVPGLSGFRGRQFHHSIPLYTRRFYPHVNNFDGFFVAKFKKLSNKKPE 596


>gi|284161602|ref|YP_003400225.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
           5631]
 gi|284011599|gb|ADB57552.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
           5631]
          Length = 321

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 23/314 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      E+   R  NF+G E  + + +A    +   + V     D      +L      
Sbjct: 15  AKRYGYNEFIVRRWINFFGFEETVKLIEAMERGIPKHIRVNTIKIDENDLIERLRERGFK 74

Query: 200 TG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                     ++ E P SI + P +  G ++V + S+ IP  +    +N  V D  +APG
Sbjct: 75  LEKTEVPFCYKVVEEPYSIGATPEYLMGYYYVMEKSSCIPPLVLNPKSNELVADFASAPG 134

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDA 309
           GKT  L   + +   + A++ +K R++ L  N+ R+ +    +I M+           D 
Sbjct: 135 GKTTFLAQLMNNRGVLIAIEANKERIQALIDNIHRMGVLNTAVIHMNAVRFCNLGLKVDK 194

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G I +  D        DI   +  Q++L+   +  +KPGG++V+S C+L 
Sbjct: 195 ILLDAPCSGEGVIHKDKDRKRVSGRKDIEFCSKLQKELVESALKSLKPGGVLVYSTCTLA 254

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVS 427
            +++E V+Q VL    + +  +         I     L  +     R  P          
Sbjct: 255 PEENELVIQYVLDRFEVEIGEIEWGEPALTEIPNFGKLDKDIAKCRRFYPH--------K 306

Query: 428 SGMDGFFAVALRRL 441
               GFF   + ++
Sbjct: 307 HESSGFFVAKIVKV 320


>gi|19113319|ref|NP_596527.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|74582834|sp|O94268|NOP2_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase nop2;
           AltName: Full=Nucleolar protein 2
 gi|3810844|emb|CAA21805.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe]
          Length = 608

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 133/337 (39%), Gaps = 28/337 (8%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
             R  S    +LL  I        +  E+L   +     +   +A   P  + +      
Sbjct: 214 PGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELFSVSEAVEFFEANEMPRPVTIRTNTLK 273

Query: 185 -DIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 A  L    +    I        ++ E    I + P +  G + +Q AS+ +PV 
Sbjct: 274 TQRRELAQALINRGVNLEPIGKWSKVGLQVFESQVPIGATPEYLAGHYILQAASSFLPVM 333

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                 N  +LD+ +APGGK   +     +   + A D +K R + L  N+ RL +    
Sbjct: 334 ALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTKALSANIHRLGVRNAI 393

Query: 293 IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +   D   +  + +  FD VL+DAPCS TG I +   V   +   D    +  QR+LLL 
Sbjct: 394 VCNYDGRKFPNEVIGGFDRVLLDAPCSGTGVIYKDQSVKTNKSERDFDTLSHLQRQLLLS 453

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG +V+S CS+   + E V+Q  L+  P  V+LV     + +       
Sbjct: 454 AIDSVNADSKTGGFIVYSTCSITVDEDEAVIQYALKKRPN-VKLVSTGLEFGR-----EG 507

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     R  P   +  +       +DGFF   L+++
Sbjct: 508 FTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKLKKI 544


>gi|24373145|ref|NP_717188.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella oneidensis
           MR-1]
 gi|24347347|gb|AAN54632.1|AE015603_6 NOL1/NOP2/sun family putative RNA methylase [Shewanella oneidensis
           MR-1]
          Length = 486

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 151/447 (33%), Gaps = 50/447 (11%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75
             ++  +     +L   + +        +D+ ++R  +    R+     A  D       
Sbjct: 68  DEILSAKQPADRVLANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFKAAGDH------ 119

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA--KLVNSILRRVSR 133
            ++      +L  S    L        +     E ++   + +      + N   +    
Sbjct: 120 -QQAAHFFAMLSASA---LLEAHPWQDIAQAWHELSQSTHDYQRLQSIPVNNLTDKLALV 175

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-- 191
            ++     +    ++PEWF +       +   L  + +   P++            +   
Sbjct: 176 RQLFPQVVLELTDLLPEWFWQVCPIDAKRRPNLIEAMSSRPPIWGRAQSINSQTAVSQLQ 235

Query: 192 ----KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
               + +        I L     ++  +  + EG   +QD ++ +  Q+          D
Sbjct: 236 ALGIEASLSPFFEDAINLGSKSMNLNEITLYKEGNIEIQDLASQVIGQICAPEPWQHWWD 295

Query: 248 LCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
            C+  GGKT             Q       + + D+    LE+L     R       I  
Sbjct: 296 ACSGAGGKTLQLRSLMQTAATKQHTPLQGSIVSSDIRANALEELSKRAQRAQFDGISIAR 355

Query: 296 MDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
             +         FD VLVDAPCS TGT RR+PD+ W    D ++  A  Q  +L +    
Sbjct: 356 WRSDALPVAANYFDGVLVDAPCSCTGTWRRNPDMRWLDTLDAVMDKATLQLDILSRSSQA 415

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GG ++++ CSL   ++EEVV   L+  P    LVP+   +               + 
Sbjct: 416 VKAGGTLIYATCSLSPVENEEVVSAFLQQHP-EFNLVPIRHPFTGEQTE--------MLT 466

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + P          +  DG F   ++R 
Sbjct: 467 VWP--------FEANTDGMFVARMQRK 485


>gi|170049385|ref|XP_001855854.1| proliferating-cell nucleolar antigen p120 [Culex quinquefasciatus]
 gi|167871246|gb|EDS34629.1| proliferating-cell nucleolar antigen p120 [Culex quinquefasciatus]
          Length = 794

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 135/335 (40%), Gaps = 30/335 (8%)

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---F 184
            R  S     L + +       E+F + L   +    +L   +A      + +       
Sbjct: 279 NRSRSEYMELLQKDLCLYYSYNEFFMQLLIKLFSPNELLEFLEASEVQRPLTIRTNSLKT 338

Query: 185 DIETWAHKLNAVM--------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
                A  L                G+ +      + + P +  G + +Q AS+ +PV  
Sbjct: 339 RRRDLAQALINRGVNLDPIGKWSKEGLVVYSSQVPLGATPEYLAGHYMIQGASSMLPVMA 398

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                N  +LD+CAAPGGK++ +   + +   + A DV+K RL+ +  N  RL +    +
Sbjct: 399 LAPEENERILDMCAAPGGKSSHIAALMRNTGVLFANDVNKDRLQAVVGNFHRLGIQNAIV 458

Query: 294 IEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
              D   Y      FD VL+DAPC+ +G I + P V  T+   DI +    QRKLLL  I
Sbjct: 459 TSEDGTKYRDIMTGFDRVLLDAPCTGSGVISKDPSVKTTKTEIDIQRCYNLQRKLLLTAI 518

Query: 353 SFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM---AM 405
             +    + GG +V+S CS+  Q++E V+   LR   + +    L+      ++      
Sbjct: 519 DCLSANSETGGYLVYSTCSILPQENEWVIDYALRKRNVKLVPTGLDFGAEGLVNFCGQKY 578

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             S +   R  P            MDGFF   L++
Sbjct: 579 HPSMKLTRRFYPHTF--------NMDGFFVAKLQK 605


>gi|302335853|ref|YP_003801060.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084]
 gi|301319693|gb|ADK68180.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084]
          Length = 484

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 97/484 (20%), Positives = 163/484 (33%), Gaps = 59/484 (12%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
             AR V+  LL     +      LL       A   L +RD+ L   +V   +     +D
Sbjct: 15  TPARRVAVRLLRDQRVRDGRSRELLR---SSDALSALDERDRALATRLVLGVVASRGALD 71

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK-- 122
           A +D  L       +  ++  LR++  +++YLD    A V   VE  +            
Sbjct: 72  AAIDSHL-RPHSHLEPKVRDALRLASFELMYLDTPPSAAVSQGVELVRLASRRAAALANA 130

Query: 123 ----------LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
                        +  R         L+ +A  + +P W    L    G+     ++ + 
Sbjct: 131 VLRRVAERDAPSAAAARARVVADDCSLEDLALTAALPIWLVRALAASRGESFARQLALSL 190

Query: 173 ISPLYIDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
             P  + +      E          A  L  +            P  +            
Sbjct: 191 ADPAPVYVVGNAAREDATVTQALLSAAGLGPLPTGLPASFELAHPSGLARSDLVGGVRAV 250

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA------LDVSKRRLEK 278
             D ++ +   +       S+L++      KT  L  +  +  A      +++   +L  
Sbjct: 251 PADLASQLVALIAAPAPGGSLLEVGQGRATKTILLQGAALRGGASADIVSVELETGKLRL 310

Query: 279 LRCNLDRLHLYAEDII--------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
            R  L R  L                D      ++ F  V VDAPCS  GT+RRHP++ W
Sbjct: 311 ARERLARAGLSDHCRSLSLDARRLSDDDIPAELRRAFGCVFVDAPCSGAGTLRRHPEIAW 370

Query: 331 TRDTDDIVKS-ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPV 388
           + D+   + +    Q ++L    S V  GG +V+S CS    + E VV+  L S +    
Sbjct: 371 SLDSTAALGTLPTLQLQILSAASSRVALGGSLVYSTCSPLVSEDESVVRAFLASPAGQGF 430

Query: 389 ELVPLNSAYWKSID-------MAMALSPEGWI--RITPDMLEKIDGVSSGMDGFFAVALR 439
            +VP+ SA   S         +A ++S EG+   R  P             D  F   L 
Sbjct: 431 SVVPVASAPGLSNAGATAARLVAESMSAEGFFVARQLPGS----------HDAHFCARLV 480

Query: 440 RLIQ 443
           R  +
Sbjct: 481 RKGE 484


>gi|34809569|pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
           Protein From Pyrococcus Horikoshii
          Length = 315

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 133/302 (44%), Gaps = 17/302 (5%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
               W +  +      E+ L       +       +   +     +   V     G  L 
Sbjct: 24  YFQLWGERAIRIAEAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLT 83

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
             P SI S P F  G+ ++Q+AS+  P           V D  AAPGGKT+ L     + 
Sbjct: 84  REPFSITSTPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRND 143

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTI 322
             + A DV + RL + R NL RL +    +    +       + FD +L+DAPC+ +GTI
Sbjct: 144 GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTI 203

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            ++P+  W R  DDI      Q +LL +G+  +KPGGI+V+S CSL+ +++E V+Q  L 
Sbjct: 204 HKNPERKWNRTXDDIKFCQGLQXRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD 263

Query: 383 SSPIPVELVPLNSAYWKSI-DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +    VEL+PL            + LS E     R+ PD+            GFF   +R
Sbjct: 264 NF--DVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDV--------HETSGFFIAKIR 313

Query: 440 RL 441
           +L
Sbjct: 314 KL 315


>gi|322705288|gb|EFY96875.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium anisopliae
           ARSEF 23]
          Length = 659

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 153/371 (41%), Gaps = 40/371 (10%)

Query: 92  QILYLDVADYAVV-DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
           Q+L   + +   V D     A+                R  S    +L++ +       E
Sbjct: 230 QLLRTRITENIRVLDDFANLAE--------------DGRSRSEYTAQLIKDVCAYYGYSE 275

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKE 207
           +  E+L N +      A  +A  +   + +    ++      A  L    +    +    
Sbjct: 276 YLAEKLYNLFTPREAFAFFEANETARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWS 335

Query: 208 LPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
                       + + P +  G + +Q AS+ +P        N  VLD+ AAPGGKT  +
Sbjct: 336 KVGLQVFESSVPLGATPEYLAGHYILQAASSFLPCMALDPQENERVLDMAAAPGGKTTYM 395

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAP 315
              + +   + A D +K R + L  N+ RL      +   DA ++  P   FD VL+DAP
Sbjct: 396 AAMMKNTGVIIANDPNKARAKGLIGNIHRLGARNVIVSNYDAREFPKPMGGFDRVLLDAP 455

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V   +   D ++    Q++LLL  I  V    K GG +V+S CS+  +
Sbjct: 456 CSGTGVIAKDPSVKTNKTELDFMQLPHTQKQLLLAAIDSVNHSSKSGGYIVYSTCSVTIE 515

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGM 430
           ++E+VVQ  LR  P  V+LV    A+ K    +      +  +R+T     +    +  +
Sbjct: 516 ENEQVVQYALRRRPN-VKLVDTGLAFGKEGFTSFMGKKFDPSLRLT----RRYYPHAYNV 570

Query: 431 DGFFAVALRRL 441
           DGF+    +++
Sbjct: 571 DGFYVAKFKKI 581


>gi|195119298|ref|XP_002004168.1| GI19747 [Drosophila mojavensis]
 gi|193909236|gb|EDW08103.1| GI19747 [Drosophila mojavensis]
          Length = 839

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 17/246 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           +      + + P +  G + +Q AS+ +PV       N  +LD+C+APGGK + +   + 
Sbjct: 389 IFNSTVPLGATPEYLAGHYMIQGASSMLPVIALAPQENERILDMCSAPGGKGSHIAAVMK 448

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320
           +   + A D ++ R++ +  N  RL +    +   DA  +      FD VL+DAPC+ TG
Sbjct: 449 NTGVLFANDANRDRIKAVVANFHRLGIVNAIVSCEDATKFRNIMTGFDRVLLDAPCTGTG 508

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEV 376
            + + P V  T+   D+ +    QRKLLL  I  V      GG VV+S CS+  +++E V
Sbjct: 509 VVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDAKSSTGGYVVYSTCSVLPEENEWV 568

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFF 434
           +   L+     V+LVPL   + +        +     R  P  ++  +    ++ MDGFF
Sbjct: 569 IDYALKKR--NVKLVPLGIDFGEP-----GFTKFRQHRYHPSLNLCRRFYPHTNNMDGFF 621

Query: 435 AVALRR 440
              L++
Sbjct: 622 VAKLKK 627


>gi|156085270|ref|XP_001610117.1| nucleolar protein-like protein with NOL1/NOP2/sun family RNA
           methylase domain [Babesia bovis T2Bo]
 gi|154797369|gb|EDO06549.1| nucleolar protein-like protein with NOL1/NOP2/sun family putative
           RNA methylase domain [Babesia bovis]
          Length = 515

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 142/367 (38%), Gaps = 29/367 (7%)

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156
           D+ D + V   +E       N   A       ++      EL + +       +   +  
Sbjct: 58  DLTDLSAVKSRIESICGLLSNWSAASKAGIATKKRGSYLRELQEMVTAYYGYSDEMSDYF 117

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM--------LPTGGIRL 205
              +     +   +A   PL + L V       +  A  L A              G+ +
Sbjct: 118 LKLFSPTEAIQFFEANERPLPMTLRVNTLKTRRKELAAALIARGANVDPVGDWSKEGLVV 177

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                 I + P +  G + +Q A++ IPV      +   VLD+ AAPGGKT     ++ +
Sbjct: 178 HSSQVPIGATPEYLAGHYMMQSAASLIPVLALSPKDGEKVLDIAAAPGGKTTHIAQMMNN 237

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGT 321
           G  + A D +K R   L  N+ RL +    +   D  D        D VL DAPCS  G 
Sbjct: 238 GGILYANDFNKERCTALVANIHRLGITNTIVTNYDGLDLKGILPPLDRVLCDAPCSGLGV 297

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVV 377
           I + P V   R   D+ ++A  Q++LLL  I  +    K G  VV+S CS+  +++E+V+
Sbjct: 298 ISKDPSVKVKRTLMDLKQNADLQKRLLLCCIDMLSVNVKKGNCVVYSTCSISVEENEQVI 357

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP---DMLEKIDGVSSGMDGFF 434
              LR     V+LVPL            ALS        P       +       +DGFF
Sbjct: 358 DYALRMR--DVKLVPLGVEAGSP-----ALSSFRGRHFHPSIGQHARRFYPHLHNLDGFF 410

Query: 435 AVALRRL 441
              L +L
Sbjct: 411 VAKLVKL 417


>gi|320586046|gb|EFW98725.1| nucleolar RNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 722

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 23/318 (7%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVML 198
           +       E+  ++L   +      A  +A  +P  + L            A  L    +
Sbjct: 258 MCSYYGYSEYLADKLFRLFPPREAFAFFEANETPRPVVLRTNTLKTHRRELAQALINRGV 317

Query: 199 PTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
               +                + + P +  G + +Q AS+ +PV       +  VLD+ A
Sbjct: 318 TLEPVGRWSKVGLQVFESNVPLGATPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAA 377

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL 306
           APGGKT  +   + +   V A D SK R + L  N+ RL      +   DA D+      
Sbjct: 378 APGGKTTHMAALMKNTGVVFANDPSKARSKGLIGNIHRLGARNVIVCNYDARDFPRVIGG 437

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPCS TG I + P V   +   D ++    Q++LLL  I  V    K GG +V
Sbjct: 438 FDRVLLDAPCSGTGVIAKDPSVKTNKTEKDFMQLPHVQKQLLLAAIDSVNHASKTGGYLV 497

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VV   L+  P    +        +     M  + +  ++    M  +
Sbjct: 498 YSTCSVTVEENEAVVAYALKRRPNVRLVETGLPFGKEGFTSIMGKTFDPTLK----MTRR 553

Query: 423 IDGVSSGMDGFFAVALRR 440
                  +DGFF   L++
Sbjct: 554 FYPHHQNVDGFFVAKLQK 571


>gi|18977629|ref|NP_578986.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM
           3638]
 gi|18893351|gb|AAL81381.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 310

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 17/304 (5%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
                 W +  +      E+ L       +       +   +     +   V     G  
Sbjct: 16  ERYYQLWGERAIRIAEAMEKPLPRCFRVNTLKGTISEITKRLMKKGFQFTRVPWAREGFC 75

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           L   P SI S P +  G+ ++Q+AS+  P           V D+ AAPGGKT+ +   + 
Sbjct: 76  LTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYMAQLME 135

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320
           +   + A DV + RL++ R NL RL +     I +   +       FD +L+DAPC+ +G
Sbjct: 136 NKGLIFAFDVDEERLKETRLNLSRLGVLNTILIHKSSLYIDELNMSFDKILLDAPCTGSG 195

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           TI ++P+    R  DDI      Q K++ + +  +KPGGI+V+S CSL+ +++E V+Q  
Sbjct: 196 TIHKNPERKHNRTLDDIKFCQGLQMKMIEKALEVLKPGGILVYSTCSLEPEENEFVIQWA 255

Query: 381 LRSSPIPVELVPLNSAYWKSI-DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           L +    +EL+PL       I    + LSPE     R  PD        +    GFF   
Sbjct: 256 LDNF--DIELLPLRYGEPALINPFGIELSPEIKKARRFYPD--------THKTSGFFIAK 305

Query: 438 LRRL 441
           +R+ 
Sbjct: 306 IRKK 309


>gi|167624219|ref|YP_001674513.1| Fmu (Sun) domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354241|gb|ABZ76854.1| Fmu (Sun) domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 404

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 141/448 (31%), Gaps = 68/448 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L  V+     L       +       L   +Q  +  +V   LR L        
Sbjct: 12  ELVISILDLVLSDGKPLDRAYSQHFSGLK---LEPTEQGRITFVVGDILRRLNLYCF--- 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +             +LL V            + + +      K     +   K++ + +
Sbjct: 66  -LSDVKPEEMARLGTRLLNV------------WHLFNELP-LPKMQYSLQIDPKVLATRI 111

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDI 186
                + +            P+W  E  +   G       +              +K   
Sbjct: 112 EEAKAQPVLWDGC-------PDWLNEMGQKQMGDAWAAERAALNKPAKRFLRTNILKCTR 164

Query: 187 ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           E  A+ L    + T                ++     F +G +  QDA + +        
Sbjct: 165 EELANALRKEGVQTVNVDGVDTALEVTSDSALFRTEAFKKGWFEQQDAGSQLVALALDAK 224

Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
             + V+D CA  GGK    +  +    ++ A+DV + +L+ L+    R   +     II 
Sbjct: 225 PGMRVVDACAGAGGKTLSISAQMQGKGRLLAMDVEQWKLDNLKQRARRGGAHNVETRIIA 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                   K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      V
Sbjct: 285 SSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRMV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG++V++ CS+  +++ + V   L  +     +                         
Sbjct: 345 KVGGMLVYATCSIMPEENRDQVDAFLAENKHFKFIED----------------------- 381

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                E I    +G DGF+   L R+ +
Sbjct: 382 -----ETISPAETGFDGFYLAKLERIAE 404


>gi|157962778|ref|YP_001502812.1| Fmu (Sun) domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157847778|gb|ABV88277.1| Fmu (Sun) domain protein [Shewanella pealeana ATCC 700345]
          Length = 449

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 83/463 (17%), Positives = 158/463 (34%), Gaps = 51/463 (11%)

Query: 2   KSGMNARLVSS-------HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54
           ++G  A+  +         L   VM +++    ++   +  +       +D+ ++R  + 
Sbjct: 13  QAGTPAQKRALSYSNTIHQLFISVMNEKLPADRIVGEYFRINKKHG--SKDRRVIRESLF 70

Query: 55  VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKR 113
              R+   +  V       +  ++  +    L + VA++       ++        Q+  
Sbjct: 71  ALFRWWGWLKKV------HTSEQQDATWFACLSL-VAELEAHKWPQFSEAWREFANQSAE 123

Query: 114 DKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
              ++    L +   R     +           ++PEWF   +      ++   I   C 
Sbjct: 124 FSLSQASQILTSVSDRCEYLNQQFSHLSFNDAELLPEWFWT-VSQVNDADKQAVIEAMCS 182

Query: 174 SPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            P           E     L        A       + L     ++ ++  +  G   +Q
Sbjct: 183 RPPIWGRAQTLTQEQLIASLASKDIVAIASEFFDDAVSLGHKSINLNAIDAYQRGELEIQ 242

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEK 278
           D  + +  Q+     +    D C+  GGKT QL     +          + D+ ++ LE+
Sbjct: 243 DLGSQVIGQICAPKADEQWWDTCSGAGGKTLQLRSLMLRQDSSASGEIVSSDIRRKPLEE 302

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           L     R            + D       FD VLVDAPCS TGT RR+PD+ W  +   +
Sbjct: 303 LLKRAKRAGFNGITTAPWKSDDLPVKASSFDGVLVDAPCSCTGTWRRNPDMRWLDEASVV 362

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q  +L +    VK  G +V++ CSL   ++E+VV   L  +    EL  L   +
Sbjct: 363 TDKHALQLDILTRSAKAVKSQGQLVYATCSLSPIENEQVVNAFLAEN-SEFELQTLTHPF 421

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          + I P   +         DG F   +++
Sbjct: 422 TGEQTQL--------LTIWPHEAD--------TDGMFVAKMKK 448


>gi|329910997|ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546013|gb|EGF31091.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 437

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 113/451 (25%), Positives = 184/451 (40%), Gaps = 50/451 (11%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +   ++R   +L   L        +   S + +  ++ I    +R L R DA++
Sbjct: 16  RSAAHAV--ALVRGGTALPQALTRV---QGYADTSGQARGAIQDIAYRAMRGLGRADALV 70

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYL--DVAD----YAVVDLAVEQAKRDKENRHFA 121
             +   +      +L  LL  ++  I     D+      + VV+ AVE A  D    H  
Sbjct: 71  TLLTSRAPE--PAALHGLLCCALTLIDRDESDLPAPYEIFTVVNQAVEAASADPAMAHAK 128

Query: 122 KLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +VN++LRR  RE+     E+L++       P W+ + + N Y ++    +     +P  
Sbjct: 129 GMVNAVLRRFLRERATLLAEVLRQPVAEWNYPGWWIDTMRNAYPQQWQAILHAGNAAPPL 188

Query: 178 I------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
           I        T    +   A +              E P  ++ +PGF EG+  VQDA+A 
Sbjct: 189 ILRVNQRRTTPDAYLALLADQQILARQVGPDAIRLERPVPVLQIPGFMEGLVSVQDAAAQ 248

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYA 290
           +   L    + + VLD CAAPGGKT  L+        ALD   RRL+++  NL RL L A
Sbjct: 249 LAAPLLDARDGMRVLDACAAPGGKTGHLLERAQLDLIALDSDPRRLKRIEENLQRLQLTA 308

Query: 291 EDII-EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +  +  A D+   K FD +L D PC+++G +RRHPD+ W R   D  + A    ++L 
Sbjct: 309 RLVAGDAAATDWWDGKPFDRILADVPCTASGILRRHPDIRWLRRKADTAQLAALSSRILD 368

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                + P G ++F  CSL  Q+SE         +       P                 
Sbjct: 369 NLWRMLAPDGKLLFVTCSLWPQESEAQAAAFAMRNQAERLPAPG---------------- 412

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               ++ P     +   +   DG F    R+
Sbjct: 413 ----QLLP-----MATSNEDHDGLFYALFRK 434


>gi|313225604|emb|CBY07078.1| unnamed protein product [Oikopleura dioica]
          Length = 700

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 28/318 (8%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPT 200
                 E+  ER       ++++A  +A      + +            A  L    +  
Sbjct: 187 YYYGYNEYLCERFTELIPLDQLVAFFEANEVHRPVTIRTNTLKCRRRELAQALINRGVNL 246

Query: 201 GGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
             +                I + P +  G + +Q AS+ +PV          VLD+CAAP
Sbjct: 247 DPVGKWSKVGLVIYDSAVPIGATPEYLAGHYMLQSASSFLPVMALAPQEGEKVLDMCAAP 306

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFD 308
           GGKT  +   + +   V A D +K R++ L  N  RL          D   +   +  FD
Sbjct: 307 GGKTTYISQLMKNTGMVLANDKNKLRMKALVANSHRLGCSNVATCNYDGRSFPTIQGGFD 366

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFS 364
            V+ DAPC+ TG I + P    +++  D+ +    Q++LLL  I  V    K GG +++ 
Sbjct: 367 RVICDAPCAGTGVIAKDPSAKLSKEDKDVRRIVHIQKELLLAAIDSVDAKSKTGGYIIYC 426

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEK 422
            CSL  +++E VV   L++  + +    L              +     R  P  +  ++
Sbjct: 427 TCSLLVEENEWVVDYGLKNRNVKLVETGLELGE-------EGFTKYRSWRFHPSMNKTKR 479

Query: 423 IDGVSSGMDGFFAVALRR 440
                + MDGFF    ++
Sbjct: 480 YYPHINNMDGFFIAKFKK 497


>gi|212634133|ref|YP_002310658.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Shewanella piezotolerans
           WP3]
 gi|212555617|gb|ACJ28071.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Shewanella piezotolerans
           WP3]
          Length = 450

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 156/447 (34%), Gaps = 44/447 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             L + V  + +    ++   +  +       +D+ ++R  +    R+   +  V     
Sbjct: 30  HQLFNSVFEQEMPADRIVGEYFRANKKHG--SKDRRVIRESLFALFRWWGWLKKV----- 82

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKRDKENRHFAKLVNSILRR 130
            +S  + +     L  V+  ++   +   ++        Q+ +         +   + + 
Sbjct: 83  HTSTEQDESWFAALAMVA--ELEQHNWDQFSEAWREFANQSNQYSIVSSTKTMPTVVDKC 140

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
              ++           ++P WF + + +    + +  I      P       K   +   
Sbjct: 141 QYVQQSFTDIEFNPRDLLPIWFWD-ITDINAIDELALIEAMSSRPPIWGRAQKCTAQQLC 199

Query: 191 HKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
            +L +           +  + L     ++  +  +  G   +QD  + +  Q+   L++ 
Sbjct: 200 AQLQSESIDASTSEFFSDTVNLGHKSINLNGIKAYLNGQLEIQDLGSQVIGQICAPLSDD 259

Query: 244 SVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
           +  D C+  GGK+ QL               TA D+ ++ L +L     R          
Sbjct: 260 NWWDTCSGAGGKSLQLRSLMLTQDDKGLGSITASDIRRKPLAELAKRAKRAGFKGISTSP 319

Query: 296 M-DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
             D       + FD VLVDAPCS TGT RR+PD+ W  D   +      Q  +L +    
Sbjct: 320 WKDESLPVAAESFDGVLVDAPCSCTGTWRRNPDMRWLDDVSVVNDKQALQLDILSRSAKA 379

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK  G +V++ CSL   ++E+VV++ L   P             + +           + 
Sbjct: 380 VKLDGQLVYATCSLSPVENEQVVKQFLCLHPHF---------TLQQLSHPFTGRAATMLT 430

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + P   +         DG F   +RR+
Sbjct: 431 VWPQDAD--------TDGMFVAKMRRV 449


>gi|213620689|ref|ZP_03373472.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 224

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 27/236 (11%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTA 268
            + +LPGFAEG   VQDASA          N   +LDLCAAPGGKT     +   A V A
Sbjct: 11  PVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLA 70

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRH 325
           +D+ ++RL ++  NL RL + A  + + D      +C ++ FD +L+DAPCS+TG IRRH
Sbjct: 71  VDIDEQRLSRVYDNLKRLGMKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 129

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           PD+ W R   DI + A  Q ++L      +KPGG +V++ CS+  +++ + ++  L+ +P
Sbjct: 130 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 189

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                           ++      EG                   DGFF   L + 
Sbjct: 190 DAALSETGTPDQPGQQNLPGG--EEG-------------------DGFFYAKLIKK 224


>gi|160935586|ref|ZP_02082961.1| hypothetical protein CLOBOL_00476 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441330|gb|EDP19040.1| hypothetical protein CLOBOL_00476 [Clostridium bolteae ATCC
           BAA-613]
          Length = 531

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 106/261 (40%), Gaps = 19/261 (7%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
             +P                P    G++++Q+ SA   V+L        VLDLCAAPGGK
Sbjct: 115 ERIPWVKEGYYYSGSRPGKHPYHEAGLYYIQEPSAMAVVELLDPRPGERVLDLCAAPGGK 174

Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAV 310
           ++     +     + + ++   R   L  N++R+ +    +   DA          F  +
Sbjct: 175 SSHIASRMKGSGFLLSNEIHPARARILSQNMERMGVRNAVVSNEDAQSLAGTFDHFFHKI 234

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           +VDAPCS  G  R+  D       + +   A  Q ++L    S + PGG +V+S C+   
Sbjct: 235 VVDAPCSGEGMFRKDEDARSQWSEEHVKMCAARQGEILDHAASMLAPGGRMVYSTCTFAP 294

Query: 371 QDSEEVVQKVLRSSPIPV-ELVPLNSAYWKSIDMAMALSPEGW-----IRITPDMLEKID 424
           +++E  V   LR  P    E VP  S + K          EGW      RI P +LE   
Sbjct: 295 EENEGTVLAFLRRHPEFCTEQVPAYSGFTKGKPQWAGPEAEGWGLERTFRIMPHILEGE- 353

Query: 425 GVSSGMDGFFAVALRRLIQPK 445
                  G F   LR+  +P+
Sbjct: 354 -------GHFMAVLRKEGEPE 367


>gi|187476742|ref|YP_784766.1| ribosomal RNA small subunit methyltransferase [Bordetella avium
           197N]
 gi|115421328|emb|CAJ47833.1| ribosomal RNA small subunit methyltransferase [Bordetella avium
           197N]
          Length = 442

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 183/449 (40%), Gaps = 59/449 (13%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
             + +  SLT  L                +   +A+    +R++   D + + ++     
Sbjct: 26  QAVDEGRSLTEALAESEAGL---------RPATQAVSFHAMRYMGWADTIANRLVPREP- 75

Query: 77  RKKYSLQQLLRVSVAQILY---------LDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126
                   LLRV+++ +           + V A + VVD AV  A   +    F  L+N 
Sbjct: 76  --APLAGALLRVALSLLKEAPGADPLPGMPVYAPHTVVDQAVTAAAEHRRLAGFKGLING 133

Query: 127 ILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
            LRR  RE+ +   ++A         P+W+ + L   Y ++   ++  A   P  + L V
Sbjct: 134 SLRRFLREREQFEAQLANDPVVRWNHPQWWIKTLRQAYPQQW-QSLLAAANVPAPLTLRV 192

Query: 183 KFDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                +    L+A                +   P  +  LPGFAEG W VQDA A +   
Sbjct: 193 NRRRASREQVLDAFSHAGLPAREAGEWGVVVLEPRPVAQLPGFAEGWWSVQDAGAQLAAP 252

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           L    + + VLD CAAPGGKTA +  ++   + ALD    RLE++  NL RL L    ++
Sbjct: 253 LLPLADGMRVLDACAAPGGKTAHMLEIANLDLVALDSDASRLERVGQNLARLGLSGASLV 312

Query: 295 EMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
             DA     +   K FDAVL D PC+++G +RRHPD+ W R   D+ ++A  Q ++    
Sbjct: 313 AADAAKLDSWWDGKPFDAVLADVPCTASGIVRRHPDIRWLRRAPDVARTAALQARIADAL 372

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              V PGG +++  CS+                    E      A+      A+ L   G
Sbjct: 373 WRVVAPGGHLLYVTCSIFP-----------------AEGQAQAQAFAARHADAIVLPAPG 415

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++ P  L+         DGFF     +
Sbjct: 416 --QLLPVALDATPERQH--DGFFYALFAK 440


>gi|159476732|ref|XP_001696465.1| hypothetical protein CHLREDRAFT_38989 [Chlamydomonas reinhardtii]
 gi|158282690|gb|EDP08442.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 360

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/322 (24%), Positives = 127/322 (39%), Gaps = 30/322 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A      E+  +   N +     L + +A   P  + L            A  L    + 
Sbjct: 42  ATYYGYNEFMIDMYLNMFSVAEALELMEANEVPRPVTLRTNTLKTRRRELAAALIQRGVS 101

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV         +V+D+ AA
Sbjct: 102 LDPIGPWSKVGLVVYETKVPIGATPEYMAGHYMLQGASSFMPVMALAPQPEETVVDMAAA 161

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KK 305
           PGGKT  +   + +   V A +++K RL+ +  NL RL +    +   D  +      ++
Sbjct: 162 PGGKTTYIAALMRNTGTVFANEINKDRLKSITGNLTRLGVTNTVVCNYDGKELPQVLGQR 221

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIV 361
             D VL+DAPCS TG + + P V  ++   DI +    Q++LLL  I  V      GG V
Sbjct: 222 SVDRVLLDAPCSGTGVVSKDPSVKTSKSQQDIWRCGHLQKQLLLAAIDLVDANSTTGGYV 281

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--M 419
           V+S CS+  ++ E VV   LR   + V    L       I            R  P    
Sbjct: 282 VYSTCSVCVEEDEAVVNYALRKRNVKVVPTGLEFGREGFIRYR-------DFRFHPSLKH 334

Query: 420 LEKIDGVSSGMDGFFAVALRRL 441
             +    +  +DGFF   L++L
Sbjct: 335 ARRFYPHAHNLDGFFVCKLKKL 356


>gi|198460957|ref|XP_001361857.2| GA21153 [Drosophila pseudoobscura pseudoobscura]
 gi|198137190|gb|EAL26436.2| GA21153 [Drosophila pseudoobscura pseudoobscura]
          Length = 934

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
                  ++  E+L + +    ++   ++      + +            A  L      
Sbjct: 333 CLYYSYNDFLMEKLMDMFPLSELMEYLESSEVARPLTIRTNTLKIRRRQLAGALINRGVN 392

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ +      + + P +  G + +Q AS+ +PV       N  +LD+C+A
Sbjct: 393 LDPLGKWTKEGLVIFNSQVPLGATPEYLGGYYMIQGASSMLPVMALAPQENERILDMCSA 452

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGK + +   + +   + A D ++ R++ +  N  RL +    +   D   +      F
Sbjct: 453 PGGKGSHIAAAMKNSGVLFANDSNRDRIKAVVANFHRLGVVNSVVSCEDGTKFRKIMTGF 512

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D +L+DAPC+ TG + + P V  T+   D+ +    QRKLLL  I  V      GGI+V+
Sbjct: 513 DRILLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSTGGIIVY 572

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E V+   L+     V+LVP    +          +     R  P  ++ +
Sbjct: 573 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 625

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGF+   L++
Sbjct: 626 RYYPHTHNMDGFYVAKLKK 644


>gi|195170348|ref|XP_002025975.1| GL10113 [Drosophila persimilis]
 gi|194110839|gb|EDW32882.1| GL10113 [Drosophila persimilis]
          Length = 934

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
                  ++  E+L + +    ++   ++      + +            A  L      
Sbjct: 333 CLYYSYNDFLMEKLMDMFPLSELMEYLESSEVARPLTIRTNTLKIRRRQLAGALINRGVN 392

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ +      + + P +  G + +Q AS+ +PV       N  +LD+C+A
Sbjct: 393 LDPLGKWTKEGLVIFNSQVPLGATPEYLGGYYMIQGASSMLPVMALAPQENERILDMCSA 452

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGK + +   + +   + A D ++ R++ +  N  RL +    +   D   +      F
Sbjct: 453 PGGKGSHIAAAMKNSGVLFANDSNRDRIKAVVANFHRLGVVNSVVSCEDGTKFRKIMTGF 512

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D +L+DAPC+ TG + + P V  T+   D+ +    QRKLLL  I  V      GGI+V+
Sbjct: 513 DRILLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSTGGIIVY 572

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E V+   L+     V+LVP    +          +     R  P  ++ +
Sbjct: 573 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 625

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGF+   L++
Sbjct: 626 RYYPHTHNMDGFYVAKLKK 644


>gi|116250091|ref|YP_765929.1| methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254739|emb|CAK05813.1| putative methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 429

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 152/448 (33%), Gaps = 46/448 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       ++D  
Sbjct: 10  AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++                        A    +++     +++    
Sbjct: 67  -----DSPAAIAHGVM-------------FRQWGFSPDSLATELADDKFAPAPLSADAVS 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE--- 187
             + +            IPEW +   E  +G   +     A  +   +DL          
Sbjct: 109 AFQSRSLDDAPPHIRGDIPEWVQPSFEQAFGAGWLAEA-QALAARPTLDLRANLLKASRD 167

Query: 188 ---TWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLF 237
                  + NA         ++           ++ +   F +G + VQD  + I   L 
Sbjct: 168 KVVKALERANAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
              +   VLD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + 
Sbjct: 228 LAHDGEQVLDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +            D VLVDAPC+ TGT RR PD  W     ++ +    Q+  L Q  SF
Sbjct: 288 DDARALSALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASSF 347

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS-AYWKSIDMAMALSPEGWI 413
           VK GG +++  CS+  Q++EE  ++    +P    +  L +       D     S +G  
Sbjct: 348 VKSGGELIYVTCSVLPQENEEQARRFTADNPDFQIVSALPAWDQLFGKDAPRPHSSDG-- 405

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +   +   S+  DGFF   ++R 
Sbjct: 406 -----LSVTLTPASTDTDGFFFCRMQRK 428


>gi|291280368|ref|YP_003497203.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1]
 gi|290755070|dbj|BAI81447.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1]
          Length = 389

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 107/425 (25%), Positives = 177/425 (41%), Gaps = 51/425 (12%)

Query: 20  RKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
            +R     LL    G+           +   R I   T + L  I  +L   L    P +
Sbjct: 10  NRRRLFNLLLSFFKGELKEDFFHDSPYRKFYRKIYFETFKHLGFIQYILTSYLKKETPIE 69

Query: 79  KYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
                  L +  AQIL+L D+ +YA V+ +V   K  ++      LVN++LRR++  K  
Sbjct: 70  S---IAALTLGTAQILFLSDIPEYAAVNESVNLVKGKQK-----SLVNAVLRRIASNKEA 121

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197
           +L++ + +   PE+F +R +N +  +                     D E +   ++   
Sbjct: 122 ILKQYSILYDFPEYFIDRWKNKFNNQE--------------------DFEKFLKSIHEKP 161

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                      P        F +  ++  D ++     L+   N   +LD CAAPGGKT 
Sbjct: 162 EYYLLEVDTLKPTP--YFEDFDKKRYYPMDINSQRIPLLYEVKNPQKILDCCAAPGGKTI 219

Query: 258 Q--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315
                   +K+TA+D S+ RL  L+ N+    L     I  D  DY   + FD +L+DAP
Sbjct: 220 ILSKKYPESKITAMDKSRERLILLKNNIKNFSLENVTPILADFLDYKFNEKFDFILLDAP 279

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           C+S GTIR+HP+V+W ++  DI K +  Q++ L + +S +   GI+++S CSL+K++   
Sbjct: 280 CTSLGTIRKHPEVVWLKNDKDINKMSKIQKRFLDKALSLLNNNGILIYSVCSLEKEEGIN 339

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            +  ++        L P      +  D                         S  DGFFA
Sbjct: 340 NINYIINKYKNVKLLKPTIPLNSEEKD-----------------FFYTPFHLSKGDGFFA 382

Query: 436 VALRR 440
             L +
Sbjct: 383 AVLTK 387


>gi|321478295|gb|EFX89252.1| hypothetical protein DAPPUDRAFT_205675 [Daphnia pulex]
          Length = 474

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 129/317 (40%), Gaps = 26/317 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  ++  E     +    ++   +A  +P  + +            A  L    + 
Sbjct: 66  CTYYSYNDFLMEAFMETFPLGELIEFLEANETPRPMTIRTNTLKTRRRDLAQALINRGVN 125

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I         +      + + P +  G + +Q AS+ +PV          VLD+ AA
Sbjct: 126 LDPIGKWSKVGLVIYNSQVPVGATPEYLAGHYILQGASSFLPVMALAPQEGDKVLDMSAA 185

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT+ +   + +   + A D +  R + +  NL RL +    ++  D          +
Sbjct: 186 PGGKTSHIAALMKNTGMLFANDANPDRAKAVVGNLHRLGVTNAVVMTYDGKILPKMSRGY 245

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           + VL+DAPCS +G I + P    ++D+ DI + +  Q++L+L  I     GG +V+S CS
Sbjct: 246 NRVLLDAPCSGSGVISKDPSAKTSKDSKDIARCSHLQKELILAAIDCADEGGYIVYSTCS 305

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSIDMAMALSPEGWIRITPDMLEKID 424
           +  Q++E VV   L+   + V    L+     + +   +    S +   R  P       
Sbjct: 306 VLVQENEWVVDYALKKRHVKVVETGLDFGRDGFPRFQKLVFHPSVKLCKRFYPH------ 359

Query: 425 GVSSGMDGFFAVALRRL 441
             +  MDGFF   L+++
Sbjct: 360 --THNMDGFFVAKLKKI 374


>gi|156545253|ref|XP_001604770.1| PREDICTED: similar to CG8545-PA [Nasonia vitripennis]
          Length = 796

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 169/428 (39%), Gaps = 39/428 (9%)

Query: 26  TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQ 83
             LL +E  +   +   ++++ L  A +N ++      +   +  L +   L   +  +Q
Sbjct: 347 NNLLPIEKANKRLKKKQEKERKLAEAEMNESISHQQIFNFPTEEELSNPTNLKDVQQRIQ 406

Query: 84  QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143
            ++ V ++    L   D +     +E  K D                 +           
Sbjct: 407 DVIMV-LSDFKKLRQPDRSR-SEYLELLKTDL---------------CTYFSYNSFLMEK 449

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
            + + P             +R + I    +     DL     +      L+ +   T   
Sbjct: 450 LMQMFPLSELLEFLESSEVQRPMTIRTNTLKTRRRDLA--HALINRGVNLDPIGKWTNVG 507

Query: 204 RLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--- 259
            +    +  + + P +  G + +Q AS+ +PV       N  +LD+CAAPGGK++ +   
Sbjct: 508 LVVYSSQVPMGATPEYLAGHYILQGASSFLPVMALEPKINERILDMCAAPGGKSSHIAAL 567

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSS 318
           + +   + + DV+K R++ +  N  RL +    I   D          FD VL+DAPC+ 
Sbjct: 568 MKNTGVLFSNDVNKDRIKAVIGNFHRLGITNSVICSYDGRKLPSVIKGFDRVLLDAPCTG 627

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSE 374
           TG + + P V   +D  DI +    QR+LLL  I  V      GGI+V+S CS+  +++E
Sbjct: 628 TGVVAKDPSVKTNKDEVDIQRCCTLQRELLLAAIDSVNARSESGGIIVYSTCSILPEENE 687

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDG 432
            +V   LR     V++VP    +      A   +     R  P   + ++       MDG
Sbjct: 688 WIVDYALRKR--DVKVVPTGLEFG-----ADGFTNYRQHRFHPSLKLTKRFYPHMHNMDG 740

Query: 433 FFAVALRR 440
           F+   L++
Sbjct: 741 FYVAKLKK 748


>gi|119182737|ref|XP_001242484.1| hypothetical protein CIMG_06380 [Coccidioides immitis RS]
          Length = 682

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 156/370 (42%), Gaps = 36/370 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + A   +  +      + +LR +                   +
Sbjct: 232 QLLRTRITDTIRI--LGDLATLGQPGKSRVDYTDLLLRDICTY-----------YGYTPY 278

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      A  +A  +P  + +    ++ +  + A  L    +    +     
Sbjct: 279 LAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 338

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  VLD+ AAPGGKT  + 
Sbjct: 339 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMS 398

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   V A D +K R + L  N+ RL      +  +DA    PK +  FD VL+DAP
Sbjct: 399 ALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDARTAFPKAMGGFDRVLLDAP 458

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 459 CSGTGVISKDPSVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 518

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ VLR  P  V++V      + S         +   R+   M  +       +D
Sbjct: 519 ENEAVVQYVLRKRPN-VKIVDTGLGNFGSEGFKSYKGKQFDPRM--AMTRRYFPHRENVD 575

Query: 432 GFFAVALRRL 441
           GF+   L+++
Sbjct: 576 GFYVCKLKKI 585


>gi|194752730|ref|XP_001958672.1| GF12515 [Drosophila ananassae]
 gi|190619970|gb|EDV35494.1| GF12515 [Drosophila ananassae]
          Length = 896

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 131/319 (41%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L + +    ++   +A      + +            A  L    + 
Sbjct: 337 CLYYSYNEFLMEKLMDMFPLTELMEYLEASEVARPLTIRTNTLKTRRRDLAGALINRGVN 396

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  +LD+C+A
Sbjct: 397 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 456

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGK + +   + +   + A D ++ R++ +  N  RL +    +   D   +      F
Sbjct: 457 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 516

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TG + + P V  T+   D+ +    QRKLLL  I  V      GG +V+
Sbjct: 517 DRVLLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSSGGYIVY 576

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E V+   L+     V+LVP    +          +     R  P  ++ +
Sbjct: 577 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 629

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGF+   L++
Sbjct: 630 RYYPHTHNMDGFYVAKLKK 648


>gi|259419057|ref|ZP_05742974.1| Fmu [Silicibacter sp. TrichCH4B]
 gi|259345279|gb|EEW57133.1| Fmu [Silicibacter sp. TrichCH4B]
          Length = 393

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 138/452 (30%), Gaps = 77/452 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L  ++  + +    L      S F     +D+  VR  V   LR 
Sbjct: 5   MTPG--ARVQAAIEILDEILAGQAT-EKTLTNWGRRSRFAG--SKDRAAVRDHVYQALRC 59

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                A+        +            +               +D A     +      
Sbjct: 60  RRSYAALGGTATGRGV-----------MIGAC--------RDQGIDTADLFTGQ------ 94

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                 + L    +      +  A  + IPEW            +   ++ A  +   + 
Sbjct: 95  --GHAPAPLSESEQAHAGTFESDAEKNDIPEWLWPVF-ARSLGAQTEDVAQALRARASVH 151

Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDAS 229
           L V     D +    +L    + T           + E    + +   +  G   +QDA+
Sbjct: 152 LRVNLLKGDRDAAISRLQQDGISTEPHEASPTALVVTEGARRVKNAESYLSGFVELQDAA 211

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   V      +   VLD C+  GGK  A   +    V A D   RR+  +     R   
Sbjct: 212 SQAVVDALPLQSAPRVLDYCSGGGGKALAIAALRDGTVYAHDADPRRMRDIPERAARAGA 271

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               +   D         FD VL DAPCS +G+ RR P+  W    D + +    Q K+L
Sbjct: 272 DITCLDTAD---LSKSAPFDLVLCDAPCSGSGSWRRDPEGKWRLTPDALDEIVALQSKIL 328

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 V  GG++ F+ CS+   ++ +  Q  L                           
Sbjct: 329 DDAAQLVADGGVLAFATCSMLDVENHKQAQDFLTRHAG---------------------- 366

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     + E    V +G DGF+    +R
Sbjct: 367 -------WEHLSESAWHVHTGTDGFYVSVFQR 391


>gi|262037542|ref|ZP_06011001.1| putative ribosomal RNA small subunit methyltransferase B
           [Leptotrichia goodfellowii F0264]
 gi|261748472|gb|EEY35852.1| putative ribosomal RNA small subunit methyltransferase B
           [Leptotrichia goodfellowii F0264]
          Length = 442

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/445 (19%), Positives = 179/445 (40%), Gaps = 38/445 (8%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
            +LL  +M         L+  +    +    +++++ +  I+N+T++ L  ID +L+  +
Sbjct: 19  VNLLDEIM-SGKYSNIQLNHYFKTKNYL---KKEKLFITNIINITIKNLIYIDYLLEKTV 74

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI---- 127
            +   RK   ++QLLR+SVAQ+ + +  +  V+  AVE AK    ++  +  VN+     
Sbjct: 75  KNIQKRK---IKQLLRISVAQLFFTEADNAGVLYEAVEVAKIINNHQ--SGFVNATLQSV 129

Query: 128 --LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
              +    E I   ++   +   P+WF  +++  Y ++  + I  +  S  Y+ +     
Sbjct: 130 LRNKDEIIENIPKDRKDGILYSYPQWFVNKMKVDYPEDY-IDIMKSYKSRSYLSVRYNSK 188

Query: 186 I------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                  E    ++ + +L +          +I     +  G   +QDAS+ + V+    
Sbjct: 189 KLTKDRFEKILSEVKSGILFSADEVYYLSNSNIFDTEEYKNGNIIIQDASSYLAVKNLNV 248

Query: 240 LNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
                VLD CAAPGGK            + A D+ + +++ L     + +     ++  D
Sbjct: 249 EKGDVVLDACAAPGGKSLAILQNFEPELLVAEDIHEHKIKILENMKKKYNFSNLKVVLND 308

Query: 298 AFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           A         FD +L+D PCS  G +R+ P+ ++    + I      Q+K+     + +K
Sbjct: 309 ATQIESLNMKFDKILLDVPCSGLGVLRKKPEKIYDLTGEQIKSLKKLQKKIFDSAYNSLK 368

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
             GI+++S C+    ++   ++  L      V    +                 G     
Sbjct: 369 ENGIILYSTCTFSINENTNNLEYFLEKYRDLVIEEVVIPENVDIRKDQWG----GVYITH 424

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
            ++           DGF+   LR+ 
Sbjct: 425 KNIYN---------DGFYIAKLRKK 440


>gi|196007796|ref|XP_002113764.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens]
 gi|190584168|gb|EDV24238.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens]
          Length = 389

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 138/368 (37%), Gaps = 31/368 (8%)

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
            L+  D  +V   ++       N      +    R+       L   +A      ++  +
Sbjct: 7   RLEPPDLQLVHQRIKDTIAVLGNFKR---LRDPERKRKDYLDLLRHDLANYYNYNDYLMQ 63

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPE- 210
           +  + +  + ++   +A      + +            A  L    +    I        
Sbjct: 64  KFTDLFDIKELIEFLEANEVERPVTIRTNTLKSRRRDLAQALINRGVNLDPIGEWSKVGL 123

Query: 211 -------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260
                   I + P +  G + +Q AS+ +PV       N  VLD+C+APGGKT  +   +
Sbjct: 124 IVFDSPVPIGATPEYLAGHYMLQGASSMLPVMALAAQPNEKVLDMCSAPGGKTTYIAALM 183

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSST 319
            +   + A DV+K R + L  N+ RL +    +   +   +      FD VL+DAPCS T
Sbjct: 184 KNTGMIVANDVNKERCKALTANIHRLGVVNTIVCSENGRQFPKIVGGFDRVLLDAPCSGT 243

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEE 375
           G I +   V   +   DI++ +  Q++LLL  I  V      GG +V+  CS+  ++ E 
Sbjct: 244 GVISKDASVKSNKVEKDILRCSHIQKELLLSAIDSVDARSSTGGYIVYCTCSIMVEEDEW 303

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGF 433
           VV   L+   + +    L              +     R  P   +  +       MDGF
Sbjct: 304 VVDYALKRRSVKLVSTGLEFG-------REGFTKFKERRFHPTLKLTRRYYPHEHNMDGF 356

Query: 434 FAVALRRL 441
           F    ++L
Sbjct: 357 FVAKFKKL 364


>gi|320040863|gb|EFW22796.1| nucleolar RNA methyltransferase [Coccidioides posadasii str.
           Silveira]
          Length = 682

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 155/370 (41%), Gaps = 36/370 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + A   +  +      + +LR +                   +
Sbjct: 232 QLLRTRITDTIRI--LGDLATLGQPGKSRVDYTDLLLRDICTY-----------YGYTPY 278

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      A  +A  +P  + +    ++ +  + A  L    +    +     
Sbjct: 279 LAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 338

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  VLD+ AAPGGKT  + 
Sbjct: 339 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMS 398

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   V A D +K R + L  N+ RL      +  +DA    PK +  FD VL+DAP
Sbjct: 399 ALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDARTAFPKAMGGFDRVLLDAP 458

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D       Q++LLL  I       K GG +V+S CS+  +
Sbjct: 459 CSGTGVISKDPSVKTSKTERDFFALPHMQKQLLLAAIDSTTHASKTGGYIVYSTCSVTVE 518

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ VLR  P  V++V      + S         +   R+   M  +       +D
Sbjct: 519 ENEAVVQYVLRKRPN-VKIVDTGLGNFGSEGFKSYKGKQFDPRM--AMTRRYFPHRENVD 575

Query: 432 GFFAVALRRL 441
           GF+   L+++
Sbjct: 576 GFYVCKLKKI 585


>gi|303319389|ref|XP_003069694.1| Nucleolar protein NOP2, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109380|gb|EER27549.1| Nucleolar protein NOP2, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 682

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 155/370 (41%), Gaps = 36/370 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + A   +  +      + +LR +                   +
Sbjct: 232 QLLRTRITDTIRI--LGDLATLGQPGKSRVDYTDLLLRDICTY-----------YGYTPY 278

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      A  +A  +P  + +    ++ +  + A  L    +    +     
Sbjct: 279 LAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 338

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  VLD+ AAPGGKT  + 
Sbjct: 339 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMS 398

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   V A D +K R + L  N+ RL      +  +DA    PK +  FD VL+DAP
Sbjct: 399 ALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDARTAFPKAMGGFDRVLLDAP 458

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D       Q++LLL  I       K GG +V+S CS+  +
Sbjct: 459 CSGTGVISKDPSVKTSKTERDFFALPHMQKQLLLAAIDSTTHASKTGGYIVYSTCSVTVE 518

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ VLR  P  V++V      + S         +   R+   M  +       +D
Sbjct: 519 ENEAVVQYVLRKRPN-VKIVDTGLGNFGSEGFKSYKGKQFDPRM--AMTRRYFPHRENVD 575

Query: 432 GFFAVALRRL 441
           GF+   L+++
Sbjct: 576 GFYVCKLKKI 585


>gi|254173584|ref|ZP_04880256.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
 gi|214032276|gb|EEB73106.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
          Length = 309

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 136/304 (44%), Gaps = 17/304 (5%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
                 W +  L      E+ L       +       +   +     +   V     G  
Sbjct: 16  ERYYELWGERALAIAEAMEKPLPRCFRVNTLRIEVPKLTKLLNKKGFQFRRVPWAREGFC 75

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           L   P SI S P +  G+ ++Q+AS+  P          +V D+ +APGGKT+ L   + 
Sbjct: 76  LTREPFSITSTPEYLSGLLYIQEASSMYPPVALEPKPGETVADMASAPGGKTSYLAQLME 135

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320
           +   + A DV + RL++ R NL RL +    +    +         FD +L+DAPC+ +G
Sbjct: 136 NEGIIYAFDVGEDRLKETRLNLSRLGVTNTVLFHRSSLYIDELGVEFDKILLDAPCTGSG 195

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           TI ++P+    R  +D+      Q K+L + +S ++ GGI+V+S CSL+ +++E V+Q V
Sbjct: 196 TIHKNPERKANRTMEDVKFCQNLQMKMLEKALSVLRKGGILVYSTCSLEPEENEFVIQWV 255

Query: 381 LRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           L +    VEL+PL     A  K   + ++   +   R  PD          G  GFF   
Sbjct: 256 LDNF--DVELLPLRYGEPALTKPFGIELSEEIKKARRFYPD--------KHGTSGFFVAK 305

Query: 438 LRRL 441
           LR+L
Sbjct: 306 LRKL 309


>gi|145251900|ref|XP_001397463.1| ribosomal RNA methyltransferase Nop2 [Aspergillus niger CBS 513.88]
 gi|134083004|emb|CAK42767.1| unnamed protein product [Aspergillus niger]
          Length = 762

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 146/337 (43%), Gaps = 23/337 (6%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---V 182
           +  +  +     L+  I        +  E+L N +      A  +A  +P  + +    +
Sbjct: 244 APGKSRTDYTELLIADICTYYGYTPYLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTL 303

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
           + +  + A  L    +    +                + + P +  G + +Q AS+ +PV
Sbjct: 304 RTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGATPEYLAGHYIIQAASSFLPV 363

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  VLD+ +APGGKT  +   + +   V A D SK R + L  N+ RL     
Sbjct: 364 MALAPQPNERVLDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNT 423

Query: 292 DIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
            +  MDA    PK +  FD VL+DAPC+ TG I + P V  +++  D +     QR+LLL
Sbjct: 424 IVTNMDARTAFPKAMGGFDRVLLDAPCTGTGVISKDPGVKTSKNERDFLAIPHMQRQLLL 483

Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
             I  V    K GG VV+S CS+  +++E VVQ VLR  P  V+LV      + S  M  
Sbjct: 484 AAIDSVDHASKTGGYVVYSTCSVTVEENEAVVQYVLRKRPN-VKLVDTGLGDFGSPGMTS 542

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            +      ++T  +  +       +DGFF   L++  
Sbjct: 543 YMGKHFDPKMT--LTRRYFPHRENVDGFFVCKLKKTA 577


>gi|254477468|ref|ZP_05090854.1| NOL1/NOP2/sun family protein [Ruegeria sp. R11]
 gi|214031711|gb|EEB72546.1| NOL1/NOP2/sun family protein [Ruegeria sp. R11]
          Length = 403

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 149/449 (33%), Gaps = 70/449 (15%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L  ++         L      S F     +D+  VR  V   LR L    A+ 
Sbjct: 7   RQAAIEILDQILA-GEPAEKQLTAWARRSRFAG--SKDRAAVRDHVFDALRCLRSFAALG 63

Query: 68  D----FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
                 ++  +    +  +   LR                    VE         H    
Sbjct: 64  GGGRVDLIDHTTTTGRQLMLGALRA-----------------EGVEPDTLFTGEGHGPSA 106

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV- 182
           +N   R       EL    A    IP+W    L +    + V A   A  S   + L V 
Sbjct: 107 LNDDERAALARVPELSD--AERLDIPQWLWP-LFSESLGDGVEAAGRALQSRAPVHLRVN 163

Query: 183 --KFDIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDASASIP 233
               D      +L +  +             + E    + +   +A G+  +QDA++   
Sbjct: 164 RRHPDQAEAVARLASEGILAEPHPAADTALNVTEGARKLRNSLAYAHGLVELQDAASQAV 223

Query: 234 VQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           ++     + + VLD CA  GGK  A    +   + A D++ +R++ L    +R       
Sbjct: 224 IEALPLADGMRVLDYCAGGGGKSLALAARAKIDLYAHDIAAQRMKDLPVRAERAG---VK 280

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           +  ++      K  +D VL DAPCS +G+ RR P+  W      +      Q  +L +  
Sbjct: 281 VTLLEPRKTGAKAPYDLVLCDAPCSGSGSWRRAPEGKWRLSQSQLDTLCQTQSAILDEAA 340

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             V  GG++ ++ CS+   ++ + V   L                         L  +  
Sbjct: 341 ELVADGGVLAYATCSMLSVENRKQVDDFLARRS------------------GWQLQSDHG 382

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++             G DGF+   LRR+
Sbjct: 383 WQV-----------QGGTDGFYVAVLRRI 400


>gi|303388173|ref|XP_003072321.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303301460|gb|ADM10961.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 306

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 18/307 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM------- 197
             E+  E++   + ++      +         + +       +  +  L           
Sbjct: 4   YNEYLLEKICELFPRKEAEVFIEESEKQRPTTIRINTLLKRRKDVSKLLRGRGVDIDDLS 63

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
               G  + +    I + P +  G + +Q A++ +PV        L+V+DLCAAPGGKT 
Sbjct: 64  WTDSGCVIFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMELKEGLTVVDLCAAPGGKTT 123

Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDA 314
            +   + +   + A D+++ R+  L+ N+ R+ +    I+ MD          D VLVDA
Sbjct: 124 HIAALMENTGTIYANDMNEERIAGLKSNVQRMGVKNCIIMNMDGRKVNVG-KVDRVLVDA 182

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS TG I + P V   R   +I +    Q++L+L G   ++PGGI+++S CS+  +++E
Sbjct: 183 PCSGTGVISKDPSVKTNRTRSEIDRMVTLQKELILHGFEMLRPGGILMYSTCSVLVKENE 242

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           EVV  +L   P                      +  G ++    M  +I      MDGFF
Sbjct: 243 EVVNYLLNKCPSARMAQCEIDIGKDGFMSFKGRNYNGSLK----MARRIYPHVHNMDGFF 298

Query: 435 AVALRRL 441
              +++ 
Sbjct: 299 YAKIQKK 305


>gi|115443216|ref|XP_001218415.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624]
 gi|114188284|gb|EAU29984.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624]
          Length = 734

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 23/319 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  +P  + +    ++ +  + A  L    + 
Sbjct: 263 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 322

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV          +LD+ AA
Sbjct: 323 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPEERILDMAAA 382

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  +DA    PK +  
Sbjct: 383 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKAMGG 442

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPC+ TG I + P V   ++  D +     QR+LLL  I  V    K GG +V
Sbjct: 443 FDRVLLDAPCTGTGVISKDPGVKTNKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYIV 502

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ VL+  P  V+LV      + S      +      ++T  +  +
Sbjct: 503 YSTCSVTVEENEAVVQYVLKKRPN-VKLVDTGLGDFGSPGFTNYMGKHFDPKMT--LTRR 559

Query: 423 IDGVSSGMDGFFAVALRRL 441
                  +DGFF    +++
Sbjct: 560 YFPHRENVDGFFVSKFKKI 578


>gi|157128943|ref|XP_001661560.1| ribosomal RNA small subunit methyltransferase b (sun) [Aedes
           aegypti]
 gi|108872435|gb|EAT36660.1| ribosomal RNA small subunit methyltransferase b (sun) [Aedes
           aegypti]
          Length = 812

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 138/336 (41%), Gaps = 30/336 (8%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK--- 183
             R  S     L + +       E+F + L   +    +L   +A      + +      
Sbjct: 289 PNRSRSEYMELLCKDLCIYYSYNEFFMQLLLKLFSPNELLEFLEASEVQRPLTIRTNSLK 348

Query: 184 FDIETWAHKLNAVM--------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 A  L                G+ +      + + P +  G + +Q AS+ +PV 
Sbjct: 349 TRRRDLAQALINRGVNLDPIGKWSKEGLVVYTSQVPLGATPEYLAGHYMIQGASSMLPVI 408

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             G   N  +LDLCAAPGGK++ +   + +   + A DV+K RL+ +  N  RL +    
Sbjct: 409 ALGPEENERILDLCAAPGGKSSHIAALMKNTGVLFANDVNKDRLQAVVGNFHRLGIQNAI 468

Query: 293 IIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +  +D   Y      FD VL+DAPC+ +G I + P V  T+   DI +    QRKLLL  
Sbjct: 469 VTSIDGTKYRDVMTGFDRVLLDAPCTGSGVISKDPSVKTTKTDVDIQRCYNLQRKLLLTA 528

Query: 352 ISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA- 406
           I  +    + GG +V+S CS+  Q++E VV   LR   + +    L+      ++ A   
Sbjct: 529 IDCLSANSETGGYLVYSTCSILPQENEWVVDYALRKRNVRLVSTGLDFGNEGFVNFAGQK 588

Query: 407 --LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              S +   R  P            MDGFF   L++
Sbjct: 589 YHPSMKLTRRFYPHTF--------NMDGFFVAKLQK 616


>gi|254466156|ref|ZP_05079567.1| NOL1/NOP2/sun family protein [Rhodobacterales bacterium Y4I]
 gi|206687064|gb|EDZ47546.1| NOL1/NOP2/sun family protein [Rhodobacterales bacterium Y4I]
          Length = 390

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/452 (19%), Positives = 147/452 (32%), Gaps = 78/452 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  V+         L      S F     +D+  VR  V   LR 
Sbjct: 1   MTP--AARLQAAIEILDQVLA-GEPAEKALTSWGRRSRFAG--SKDRAAVRDHVFTALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L    A+        L      +   LR                   A +        + 
Sbjct: 56  LRSHAALGGARSGRGL------ILGALR------------------EAGQDPDEVFTGQG 91

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A        R+     E     A    IP+W      +        A + A  S   + 
Sbjct: 92  HAPAPLGESERLLPPPPEG----AEALDIPDWLWPAF-SASLGAGAEAAAQALRSRAPVH 146

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIR----------LKELPESIVSLPGFAEGVWWVQDAS 229
           L V     T      A+       R          + E    + +   +++G+  +QDA+
Sbjct: 147 LRVNTSRGTLQQAQEALAADGIATRPHPAAATALEVTEGARKLRNAKAYSDGLVELQDAA 206

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   V+     + +SVLD CA  GGK  A    +  ++ A D   +R++ L     R   
Sbjct: 207 SQAVVERLPLTDGMSVLDYCAGGGGKSLAMAARARIRLHAHDADPKRMKDLPERAARAGA 266

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               +   D     P   FD VL D PCS +G+ RR P+  W    + +      Q ++L
Sbjct: 267 GVTLLTSADFARTGP---FDLVLCDVPCSGSGSWRRAPEGKWRLTPEGLRALQETQSEIL 323

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                   PGG + ++ CS+ + ++ + VQ  + ++P                    +L+
Sbjct: 324 RTAAGLTAPGGTLAYATCSMLQAENTQQVQTFIGNNPEW------------------SLA 365

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E   ++             G DGF+   L R
Sbjct: 366 AEQSWQV-----------QDGTDGFYVAVLTR 386


>gi|297517906|ref|ZP_06936292.1| 16S rRNA methyltransferase B [Escherichia coli OP50]
          Length = 259

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 19/265 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE A   K  +  
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +LR+  R++ E            + P W  +RL+  Y  E+  +I +A      
Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173

Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + L +       ++W   L+   +                P  + +LPGF +G   VQDA
Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPG 253
           SA   +      N   +LDLCAAPG
Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPG 258


>gi|256043272|ref|ZP_05446209.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256111724|ref|ZP_05452708.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis
           bv. 3 str. Ether]
 gi|326410534|gb|ADZ67598.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis
           M28]
 gi|326553825|gb|ADZ88464.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis
           M5-90]
          Length = 364

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 130/342 (38%), Gaps = 23/342 (6%)

Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
             +R   + +++  R   + +          + +PEW    LE  +G ER ++   A  +
Sbjct: 28  HGDRFAPEGLDAARRAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALAT 86

Query: 175 PLYIDLTVKFDIETWAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEG 221
              +DL V     T    L A+                    E++   P       F +G
Sbjct: 87  RPAVDLRVNSLKATPEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDG 146

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278
            + VQD  + +     G      VLD CA  GGKT   A  + +  ++ A D  + RL  
Sbjct: 147 WFEVQDLGSQLAALFAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSP 206

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +   L R  +    +              D VL DAPC+ +GT RR PD  W  +   + 
Sbjct: 207 MHERLQRAGVRNTQVYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLE 266

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           +    Q+ +L     FVKPGG + +  CSL  +++   V + L  +P   E+ P      
Sbjct: 267 RRVQDQQDVLDSARRFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGT 326

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              D +          + P        +S+G DGF+   L+R
Sbjct: 327 VVQDDSAGKP------VFPSHGSVFSPLSTGTDGFYVSILQR 362


>gi|254461760|ref|ZP_05075176.1| Fmu [Rhodobacterales bacterium HTCC2083]
 gi|206678349|gb|EDZ42836.1| Fmu [Rhodobacteraceae bacterium HTCC2083]
          Length = 398

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 157/451 (34%), Gaps = 68/451 (15%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +   L  +    +     L      S F     +D+  VR  V   LR 
Sbjct: 1   MTPG--ARISAAIECLDLIFD-GMPAEKALTGWARRSRFAG--SKDRNAVRDHVFDALRR 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 +   +   S+            + +  + + D+   A+ +              
Sbjct: 56  RDTCATIGGELTGRSV-----------MIGLV-LFHDDLGFDALFN------GVGHAPDE 97

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             +   S L +V   ++      +    + +W  ++L + +  +    I++A  S   +D
Sbjct: 98  LNEEEKSRLSKVLSSEVNAAGGASTSWDLQDWCCDKLSSSHP-QNARHIAEALKSRAPVD 156

Query: 180 LTVKFDIE---TWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDAS 229
           + V            +L+A  +            RLK+    I     + +G+  +QDA 
Sbjct: 157 VRVNLRRSMVSQAQEQLHAEAIEAETCSLAPAALRLKQNARKIARSQTYLDGIIELQDAG 216

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   V      +  +VLD CA  GGK+  +   S A+V A D+S  R+  +    +R  +
Sbjct: 217 SQALVGALPLDDCKTVLDYCAGGGGKSLAICDLSDAQVFAHDISVARMADIPKRAERAGV 276

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               +   D   + P   FD VL DAPCS +G+ RR PD  W    +   +    Q ++L
Sbjct: 277 SITCLASEDLPKHAP---FDLVLCDAPCSGSGSWRRSPDAKWRITPEKFNELLGLQFEIL 333

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    V P G + ++ CSL  +++   V++ L   P                       
Sbjct: 334 CKAQKLVVPMGYLAYATCSLFAEENGYQVRRFLEKHPNFER------------------- 374

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                       +     +   DGFF   ++
Sbjct: 375 ----------KSQHNWTPADECDGFFVCVMQ 395


>gi|167585080|ref|ZP_02377468.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia ubonensis
           Bu]
          Length = 465

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 171/444 (38%), Gaps = 45/444 (10%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           R+  +L   L   +   A    +   +   + +   T+R L   D ++  ++  + P   
Sbjct: 43  RRGTALPAALATVFAGMASGAQALA-RGATQDVAYRTMRRLGSADWLIGRLVSKAPPAHV 101

Query: 80  YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            ++              +           + VVD AV      +E      +VN++LRR 
Sbjct: 102 QAVLACALALLLDEGDAAAY-------PAFTVVDQAVTAIGARREVAFAKGMVNAVLRRF 154

Query: 132 SREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
            RE+      +            W+++ ++  +       ++        + L V     
Sbjct: 155 LRERDAQVAAMQDDPVARWNYRAWWRDAVQAAWPDGWQAMLAAGDRPGP-LTLRVNARRT 213

Query: 188 TWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           T    L+ +                   P  +  +PGFA+GV  VQDA A +  +  G  
Sbjct: 214 TVDAYLDTLRSHGIDAAAIGKHAVRLASPLPVERIPGFADGVVSVQDAGAQLAAEWLGAA 273

Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
           + + VLD CAAPGGKT  ++  + A+V AL+    R  ++  NL RL L A D+   D  
Sbjct: 274 DGMRVLDACAAPGGKTGHILELADAEVIALESDAARATRIGENLARLSLVA-DVRVGDAG 332

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
              ++   + FD +L D PCS++G +RRHPD+ W R   DI      QR++L      VK
Sbjct: 333 APGEWHDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVK 392

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +++  CS+  ++ E   +    +    V L        ++                
Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPRAASGGAQAG-------- 444

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
                     ++  DGFF    ++
Sbjct: 445 ----AAGPDQNTDHDGFFYARFQK 464


>gi|17989235|ref|NP_541868.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260564480|ref|ZP_05834965.1| hypothetical protein BAWG_1695 [Brucella melitensis bv. 1 str. 16M]
 gi|265989698|ref|ZP_06102255.1| fmu domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993197|ref|ZP_06105754.1| fmu domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265999158|ref|ZP_06111585.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|17985095|gb|AAL54132.1| 16S ribosomal RNA m(5)c 967 methyltransferase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260152123|gb|EEW87216.1| hypothetical protein BAWG_1695 [Brucella melitensis bv. 1 str. 16M]
 gi|262764067|gb|EEZ10099.1| fmu domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000367|gb|EEZ13057.1| fmu domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092467|gb|EEZ16720.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9]
          Length = 380

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 130/342 (38%), Gaps = 23/342 (6%)

Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
             +R   + +++  R   + +          + +PEW    LE  +G ER ++   A  +
Sbjct: 44  HGDRFAPEGLDAARRAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALAT 102

Query: 175 PLYIDLTVKFDIETWAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEG 221
              +DL V     T    L A+                    E++   P       F +G
Sbjct: 103 RPAVDLRVNSLKATPEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDG 162

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278
            + VQD  + +     G      VLD CA  GGKT   A  + +  ++ A D  + RL  
Sbjct: 163 WFEVQDLGSQLAALFAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSP 222

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +   L R  +    +              D VL DAPC+ +GT RR PD  W  +   + 
Sbjct: 223 MHERLQRAGVRNTQVYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLE 282

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           +    Q+ +L     FVKPGG + +  CSL  +++   V + L  +P   E+ P      
Sbjct: 283 RRVQDQQDVLDSARRFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGT 342

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              D +          + P        +S+G DGF+   L+R
Sbjct: 343 VVQDDSAGKP------VFPSHGSVFSPLSTGTDGFYVSILQR 378


>gi|115353229|ref|YP_775068.1| sun protein [Burkholderia ambifaria AMMD]
 gi|115283217|gb|ABI88734.1| sun protein [Burkholderia ambifaria AMMD]
          Length = 462

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 169/444 (38%), Gaps = 48/444 (10%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           R+  +L   L   +        +   +   + +   T+R L   D ++  ++  + P   
Sbjct: 43  RRGTALPAALAAVFAQMPADAQALA-RGATQDVAYRTMRRLGSADWLIGRLVSKAPPAHV 101

Query: 80  YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            ++              +           + +VD AV      +E      LVN++LRR 
Sbjct: 102 QAVLAAALALLLDPEETAAY-------PAFTIVDQAVTVIGARREFAFAKGLVNAVLRRF 154

Query: 132 SREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
            RE+  L                W+ + ++  +       ++        + L V     
Sbjct: 155 QRERDALVAALRDDPVARWNYRPWWIDAVKRAWPDAWQAILAAGERQGP-LTLRVNARRA 213

Query: 188 TWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +    L+                        +  +PGFA+GV  VQDA A +  +  G  
Sbjct: 214 SVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGAR 273

Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
           + + VLD CAAPGGKT  ++  +GA+V AL+    R  ++  NL RL L A D+   D  
Sbjct: 274 DGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSLTA-DVRVGDAG 332

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
               +   + FD +L D PCS++G +RRHPD+ W R   DI      QR++L      VK
Sbjct: 333 APDAWYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVK 392

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +++  CS+  ++ E   +    +    V L          +    A + +      
Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVPAGAAGARD------ 446

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
                     ++  DGFF    ++
Sbjct: 447 ---------QTTDHDGFFYARFQK 461


>gi|157961827|ref|YP_001501861.1| Fmu (Sun) domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157846827|gb|ABV87326.1| Fmu (Sun) domain protein [Shewanella pealeana ATCC 700345]
          Length = 405

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 148/448 (33%), Gaps = 68/448 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L  V+ +   L       +       L   +Q  +  +V   LR L        
Sbjct: 12  ELVISILDLVLSEGKPLDRAYSQHFS---GLKLEPTEQGRITFVVGDILRRLNLYCY--- 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +   +         +LL V            + + +          + ++  ++  + L
Sbjct: 66  -LSDVTPEEMARLGSRLLNV------------WHLFNELP-----LPKMQYSLQVDTADL 107

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYID-LTVKFDI 186
                          G    P+W  +  E   G +      +    +  ++    +K   
Sbjct: 108 ASRIESAKAQPVLWDG---CPDWLNQMGEAQMGDKWPAERAALNKPAKRFLRTNILKCTR 164

Query: 187 ETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +  A+ L    + T  +   +         ++     F +G +  QDA + +        
Sbjct: 165 DELANALRKEGVQTASVEGVDTALEVVSDSALFRTEAFKKGWFEQQDAGSQLVALALDAK 224

Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
             + V+D CA  GGK    +  +    ++ A+DV + +L+ L+    R   +     II 
Sbjct: 225 PGMRVVDACAGAGGKTLSISAQMQGKGRLLAMDVEQWKLDNLKQRARRAGAHNVETRIIA 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                   K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      V
Sbjct: 285 SSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRMV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GGI+V++ CS+  +++ + +   L  +     +                         
Sbjct: 345 KVGGILVYATCSIMPEENRDQIDAFLAENKHFRFIED----------------------- 381

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                E I    +G DGF+   L R+ +
Sbjct: 382 -----ETISPAETGFDGFYLAKLERISE 404


>gi|321252144|ref|XP_003192304.1| nucleolar RNA m(5)C methyltransferase; Nop2p [Cryptococcus gattii
           WM276]
 gi|317458772|gb|ADV20517.1| Nucleolar RNA m(5)C methyltransferase, putative; Nop2p
           [Cryptococcus gattii WM276]
          Length = 696

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 132/338 (39%), Gaps = 25/338 (7%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
             +  S   ++L   IA       +   +L   +  +  LA  ++  SP  + +      
Sbjct: 290 PGKSRSDHMLQLQHDIATYFGYNTFLVGKLMKLFAADEALAFFESNESPRPVTIRANTLR 349

Query: 185 -DIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 A  L    +    I        ++ E P  I + P +  G + +Q AS+ +PV 
Sbjct: 350 TRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPIGATPEYLAGHYMLQAASSFLPVI 409

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                 N  VLD+ +APGGKT  +     +   V A D +K R + L  N+ R+      
Sbjct: 410 ALAPQPNERVLDMASAPGGKTTYISALLQNTGIVFANDSNKARTKSLTANVHRMGCKNVV 469

Query: 293 IIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +   DA ++      FD VL+DAPCS TG I +   V   +   D    A  Q++L+L  
Sbjct: 470 VCNYDAREFPKVMGGFDRVLLDAPCSGTGVISKDASVKVNKTERDFQLLAHLQKQLILCA 529

Query: 352 ISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           I  V P    GG +V+S CS+   ++E VV   LR  P     V L              
Sbjct: 530 IDSVNPNSSTGGYLVYSTCSVTVDENESVVDYALRKRPN----VKLVETGLDFGVHGFKS 585

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                   +  +  +       MDGFF    +  ++P+
Sbjct: 586 FEGKNFHSSVSLTRRFYPHKHNMDGFFVAKFK--VEPR 621


>gi|195026871|ref|XP_001986354.1| GH21314 [Drosophila grimshawi]
 gi|193902354|gb|EDW01221.1| GH21314 [Drosophila grimshawi]
          Length = 843

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 17/246 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           +      + + P +  G + +Q AS+ +PV          VLD+C+APGGK + +   + 
Sbjct: 410 IFNSTVPLGATPEYLAGHYMIQGASSMLPVIALAPQEKERVLDMCSAPGGKGSHIAAVMK 469

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320
           +   + A D ++ R++ +  N  RL +    +   DA  +      FD VL+DAPC+ TG
Sbjct: 470 NTGVLFANDANRDRIKAVVANFHRLGIVNAVVSCEDATKFRNIMTGFDRVLLDAPCTGTG 529

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEV 376
            + + P V  T+   D+ +    QRKLLL  I  V      GG +V+S CS+  +++E V
Sbjct: 530 VVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDAKSSTGGYIVYSTCSVLPEENEWV 589

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFF 434
           +   L+     V+LVPL   + +        +     R  P  ++ ++    ++ MDGF+
Sbjct: 590 IDYALKKR--NVKLVPLGIDFGEP-----GFTKFRQHRYHPSLNLSKRFYPHTNNMDGFY 642

Query: 435 AVALRR 440
              L++
Sbjct: 643 VAKLKK 648


>gi|291563058|emb|CBL41874.1| tRNA and rRNA cytosine-C5-methylases [butyrate-producing bacterium
           SS3/4]
          Length = 496

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 16/254 (6%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           A +         E        P    G +++Q+ SA    +         +LDLCAAPGG
Sbjct: 67  AKVPWAEEGFYYEADMRPGRHPFHEAGAYYIQEPSAMSVAEAVSPKPGEQILDLCAAPGG 126

Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309
           K+      +     +   ++   R + L  N++RL +    +  MD F   P     FD 
Sbjct: 127 KSTHLAGKMGGQGLLVCNEIHPARAKILSQNIERLGVKNAVVTNMDPFQLAPAFPEFFDG 186

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           ++VDAPCS  G  R+  +       D + + A  Q  +L    + +K GG + +S C+  
Sbjct: 187 IVVDAPCSGEGMFRKDENARNEWSPDHVKQCAGLQDGILDCAAAMLKDGGRIAYSTCTFS 246

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGV 426
            +++E+ + + L   P    + P    Y+       A   E     +RI P + +     
Sbjct: 247 PEENEQSIARFLERHPEFSVVQPELVKYFSGGHPEWADGDEELKKTVRIWPHLADGE--- 303

Query: 427 SSGMDGFFAVALRR 440
                G F   L +
Sbjct: 304 -----GHFLALLVK 312


>gi|210633282|ref|ZP_03297747.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279]
 gi|210159200|gb|EEA90171.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279]
          Length = 495

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 162/479 (33%), Gaps = 46/479 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  +   L            + D+         LS RD      +        
Sbjct: 23  MAGLTPARRATLDALMQAQESGRY---VRDIFAHGDQLGRLSSRDAAFALRLALGVTATE 79

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +D  L+  L     +    ++  LR+S  + LYLD     VV   VE  +     +  
Sbjct: 80  GCLDDALNSHLAKP-GKVSARVRCCLRISAYEALYLDTPADVVVSQGVELVRSC--AKSA 136

Query: 121 AKLVNSILRRVSREKIEL------------LQRIAGISIIPEWFKERLENFYGKERVLAI 168
           + L N++LRRV   + +             +   A  S +P W    +   +  E    +
Sbjct: 137 SGLANAVLRRVCENRTQFLSAEDAVDEQRPIVSAARRSGLPVWLVRAITRAHPLESSRVL 196

Query: 169 SDACISPL---YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
           +          +++  +     +W  +    +L   G        ++     F       
Sbjct: 197 AAQTRPAPTAVHLNARLDGSKPSWLDQAQPALLGLAGAYRVAHVGAVAHAGAFDRADAVA 256

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK------VTALDVSKRRLEKL 279
            D SA +         +   L++ A  G KT  +     +        ALD+ + +    
Sbjct: 257 SDFSAQLIATAAVAAGS--CLEIGAGRGTKTFVMQSQAIRAGLTRTHVALDLYEGKCAAN 314

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTGTIRRHPDV 328
              ++            DA D              +  FD VLVDAPCS TGT+RRH ++
Sbjct: 315 ARRIELAEYPRVKTAFGDARDLDAVLGALDREAARRMEFDTVLVDAPCSGTGTMRRHGEI 374

Query: 329 LWTRDTDDIVK-SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-PI 386
            W     D+ +     Q  LL    + V  GG ++++ CS+  +++E V+++  RS    
Sbjct: 375 PWRLARTDVTRDLPELQLALLSAAAARVAVGGQLLYATCSIMPEENEGVLERFARSEMGS 434

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRRLIQ 443
              + PL+ A    ++     +    IR   D   L          DG F   + R  Q
Sbjct: 435 AFRVEPLSQAPAFCLEPFRHAAD--VIRGHEDERGLFHTYPAPDEFDGHFCARMVRRSQ 491


>gi|163736396|ref|ZP_02143815.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107]
 gi|161390266|gb|EDQ14616.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107]
          Length = 403

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 146/443 (32%), Gaps = 60/443 (13%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L  ++         L      S F     +D+  VR  V   LR L    A+ 
Sbjct: 7   RQAAIEILDHIL-TGEPAEKALTAWARRSRFAG--SKDRAAVRDHVFAALRCLRSYAALG 63

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                  +     + +Q L +     L  +  D A +   V  A    E    A +  + 
Sbjct: 64  GGGGAGEISDSNTTGRQ-LMLGA---LRAEGVDVAEIFSGVGHAPAPLEPAEEAAISTAP 119

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVK-FD 185
                        +   +  IP+W         G     A          ++ +  +  D
Sbjct: 120 -----------QMQPTEVLDIPDWLWPAFAASLGDAAEAAARALQQRAPVHLRVNQRKTD 168

Query: 186 IETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +     L+   +             + E    + +   +  G+  +QDA++   ++   
Sbjct: 169 RDAALIALSEEGILAEAHPAADTALSVTEGARKLRNSSAYLTGLVELQDAASQAVIEALP 228

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
             +   VLD CA  GGK+  +   G     A D++ +R++ L    DR    A  ++  D
Sbjct: 229 LADGQRVLDFCAGGGGKSLAIAARGNLAVFAHDIAPQRMKDLPARADRAGA-AITVLAPD 287

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K  FD VL DAPCS +G+ RR P+  W      +      Q ++L      V  
Sbjct: 288 DV--AAKAPFDLVLCDAPCSGSGSWRRAPEGKWRLTQARLDDLCQTQAQILNDASQLVAT 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG + ++ CS+   ++ + V   L  +P                     L  +   ++  
Sbjct: 346 GGTLAYATCSMLNAENCDQVAAFLARNPNW------------------QLQQDHGWQVH- 386

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                      G DGF+   L R
Sbjct: 387 ----------GGTDGFYVAVLSR 399


>gi|221484442|gb|EEE22738.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505587|gb|EEE31232.1| ribosomal RNA small subunit methyltransferase B, putative
           [Toxoplasma gondii VEG]
          Length = 804

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 120/322 (37%), Gaps = 25/322 (7%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG 201
                    E     +  +   A  +A      + L            A  L A      
Sbjct: 280 YYQYRPELVEYFLQLFKPQEAYAFFEANEENRPMTLRTNSLKTRRRDLAAALIARGCNVD 339

Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            +                + + P +  G + +Q A++ IPV          V+D+ AAPG
Sbjct: 340 PLGEWTKVGLKVYESTVPVGATPEYLAGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPG 399

Query: 254 GKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDA 309
           GKT  +     +   + A D  K R   L  NL RL +    +  +D           D 
Sbjct: 400 GKTTYIAQLLKNEGILFANDAKKERCTSLMANLHRLGVTNCIVSCVDGRTLPTMLPPMDR 459

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSN 365
            L+DAPC+ +G I R P +   R  +D  + +  Q++LL   +  V      GG +V+S 
Sbjct: 460 ALLDAPCTGSGIIARDPSIKVKRKPEDFAEHSKLQKQLLCAAVDAVNADSPTGGYIVYST 519

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+  +++E+VV  +L +    V+LVPL       +        + +    P    +   
Sbjct: 520 CSISVEENEQVVDYILTAR--NVKLVPLGVDI--GVPGLSGFRGQQFHNSVPLYTRRFYP 575

Query: 426 VSSGMDGFFAVALRRLI--QPK 445
             +  DGFF    ++L   +P+
Sbjct: 576 HVNNFDGFFVAKFKKLSNKKPE 597


>gi|167624961|ref|YP_001675255.1| Fmu (Sun) domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354983|gb|ABZ77596.1| Fmu (Sun) domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 449

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 151/446 (33%), Gaps = 44/446 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             L   VM +++    ++   +          +D+ ++R  +    R+   +  +     
Sbjct: 30  YQLFVSVMNEKLPADRIVGEYFRTHKKHG--SKDRRVIRESLFALFRWWGWLKKI----- 82

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKRDKENRHFAKLVNSILRR 130
             +  ++  S    L + VA++       ++        Q+     +     LV+   R 
Sbjct: 83  -HTSEQQDTSWFACLSL-VAELEAHKWPQFSDAWREFANQSPEFNLSPATQALVSVSDRC 140

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
               +           ++PEWF   L      ++   I   C  P           +   
Sbjct: 141 AYLNQQFANISFCDTELLPEWFW-LLAEVDNSDKQAIIEAMCSRPPIWGRAQTITQQQLI 199

Query: 191 HKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
             L        A       + L     +  ++  +  G   +QD  + +  Q+     + 
Sbjct: 200 ASLANDEITAVANEYFDDAVSLGHKSVNFNAITAYQRGELEIQDLGSQVIGQICAPKADE 259

Query: 244 SVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
              D C+  GGKT QL     +          + D+ ++ LE+L     R          
Sbjct: 260 KWWDTCSGAGGKTLQLRSLMLRQGSSAQGSIVSSDIRRKPLEELTKRAKRAGFNGITTAP 319

Query: 296 MDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
             +         FD VLVDAPCS TGT RR+PD+ W  D   +      Q  +L +  + 
Sbjct: 320 WKSEALPVNANAFDGVLVDAPCSCTGTWRRNPDMRWLDDQSVVTDKHALQLDILTRSANA 379

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK  G +V++ CSL   ++E+VV   L ++    EL  L   +               + 
Sbjct: 380 VKSQGQLVYATCSLSPIENEQVVNAFLAAN-TEFELQTLTHPFTGEQTQ--------MLS 430

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           I P   +         DG F   +++
Sbjct: 431 IWPHEAD--------TDGMFVAKMKK 448


>gi|145512139|ref|XP_001441986.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409258|emb|CAK74589.1| unnamed protein product [Paramecium tetraurelia]
          Length = 554

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 130/319 (40%), Gaps = 26/319 (8%)

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM 197
            +               + +    ++A  DA  +P  I + V       +  A  L    
Sbjct: 196 HLCTYYGYNSDLMSHFSSMFKPAELVAFLDANDAPRPITIRVNTLRTRRKELAQTLVQRG 255

Query: 198 LPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
           +    +                I + P +  G + +Q AS+ +PV       N  +LD+ 
Sbjct: 256 VNLDSVGDWTKVGLVIYESKVPIGATPEYLSGHYMLQSASSFLPVLALAPQMNERILDMA 315

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           AAPGGKT  +   + +   + A D SK R + L  NL R+ +    +   D   +     
Sbjct: 316 AAPGGKTTYIAQLMKNSGVIFANDTSKDREKALFYNLQRMGVTNCIVTNYDGRKFPKVMK 375

Query: 307 -FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD VL+DAPC+  G I + P +   +   DI+K +  Q++L+L  I   K GGIVV+S 
Sbjct: 376 NFDRVLLDAPCTGLGIISKDPSIKAQKQMRDILKHSHLQKELILSAIDCCKKGGIVVYST 435

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           CS+   ++E V+Q  L +  + +    L   N    K  D     S     RI P +   
Sbjct: 436 CSVSVHENEVVLQYALNNRHVKLIETGLEVGNPGLLKFDDKKFHPSMNLARRIYPHV--- 492

Query: 423 IDGVSSGMDGFFAVALRRL 441
                  MDGFF   L+++
Sbjct: 493 -----HNMDGFFYAKLKKI 506


>gi|307212380|gb|EFN88172.1| Putative RNA methyltransferase NOL1 [Harpegnathos saltator]
          Length = 778

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 17/246 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           +      + + P +  G + +Q AS+ +PV+      N  +LD+CAAPGGK + +   + 
Sbjct: 523 VYSSQVPMGATPEYLAGHYIIQGASSFLPVEALNPKENERILDMCAAPGGKASHIAALMK 582

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320
           +   + A DV++ RL+ +  N  RL +    +   D   +      FD VL+DAPC+ TG
Sbjct: 583 NTGVLFANDVNQDRLKAVVGNFHRLGIVNSVVCSYDGRKFPTIMKGFDRVLLDAPCTGTG 642

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEV 376
            + + P V   +D  DI +    QR+LLL  I  V      G I+V+S CS+  +++E +
Sbjct: 643 VVAKDPSVKTNKDEVDIQRCCTLQRELLLAAIDCVNARSETGSIIVYSTCSILPEENEWI 702

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFF 434
           +   L+     V+L+P +  +          +     R  P   + ++       MDGFF
Sbjct: 703 IDYALKKR--DVKLLPTDLEFG-----TDGFTSYRQHRFHPSLKLTKRFYPHVHNMDGFF 755

Query: 435 AVALRR 440
              L++
Sbjct: 756 VAKLKK 761


>gi|325190500|emb|CCA24999.1| ribosomal RNA methyltransferase nop2like protein put [Albugo
           laibachii Nc14]
          Length = 597

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 122/314 (38%), Gaps = 28/314 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM------- 197
                 E     +     L   +A      + +            A  L           
Sbjct: 189 YNRELVEMFLKIFSPAECLEFIEANEQTRPLVIRTNTLKARRRDLAQHLIQRGVNLDPLA 248

Query: 198 -LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                G+++ + P  I + P +  G + +Q AS+   V       N  VLD+  APGGKT
Sbjct: 249 KWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSMCAVVALAPQLNERVLDMACAPGGKT 308

Query: 257 AQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLV 312
             +   + +   V A D+ K+RL+    NL RL +    +   D          FD VL+
Sbjct: 309 TYIAQLMKNTGTVIANDLKKQRLKATVANLHRLGVRNCSVCCYDGRQLPALFKGFDRVLL 368

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSL 368
           DAPC+  G I R P +   +   D+ + A  Q++LLL  I  V    K  G +V+S CS+
Sbjct: 369 DAPCTGLGVISRDPSIKTQKTEKDVERLAHLQKELLLAAIDAVDARSKTAGYIVYSTCSV 428

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGV 426
             +++E V+   L      V+LV     + KS       +     R  P   M ++    
Sbjct: 429 MVEENEAVIDYALGKR--CVKLVDPGLDHGKS-----GFTRYQHQRFHPSLSMSKRFYPH 481

Query: 427 SSGMDGFFAVALRR 440
              MDGFF   L++
Sbjct: 482 VHNMDGFFVAKLKK 495


>gi|171319444|ref|ZP_02908549.1| sun protein [Burkholderia ambifaria MEX-5]
 gi|171095336|gb|EDT40317.1| sun protein [Burkholderia ambifaria MEX-5]
          Length = 462

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 168/444 (37%), Gaps = 48/444 (10%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           R+  +L   L   +            +   + +   T+R L  +D ++  ++  + P   
Sbjct: 43  RRGTALPTALATVFAQMP-AGAQALARGATQDVAYRTMRRLGSVDWLIGRLVSKAPPAHV 101

Query: 80  YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            ++              +           + +VD AV      +E      LVN++LRR 
Sbjct: 102 QAVLAGALALLLDPEETAAY-------PAFTIVDQAVTVIGARREFAFAKGLVNAVLRRF 154

Query: 132 SREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
            RE+      L            W+ + ++  +       ++        + L V     
Sbjct: 155 QRERDVLVAALQDDPVARWNYRPWWIDAVKRAWPDAWQAILAAGERQGP-LTLRVNARRA 213

Query: 188 TWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +    L+                        +  +PGFA+GV  VQDA A +  +  G  
Sbjct: 214 SVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGAR 273

Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
           + + VLD CAAPGGKT  ++  +GA V AL+    R  ++  NL RL L A D+   D  
Sbjct: 274 DGMRVLDACAAPGGKTGHILELAGADVVALESDATRAARIGENLARLSL-AADVRVGDAG 332

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
               +   + FD +L D PCS++G +RRHPD+ W R   DI      QR++L      VK
Sbjct: 333 APGAWYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVK 392

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +++  CS+  ++ E   +    +    V L          +    A + +      
Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVHAGAAGALD------ 446

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
                     ++  DGFF    ++
Sbjct: 447 ---------QNTDHDGFFYARFQK 461


>gi|147778971|emb|CAN71575.1| hypothetical protein VITISV_037193 [Vitis vinifera]
          Length = 741

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 34/326 (10%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                E+    L   +    ++ + +A   P  I L            A  L    +   
Sbjct: 207 YYGYNEFLIGVLVEMFPVIELMELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLD 266

Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            +                I + P +  G + +Q AS+ +PV          ++D+ AAPG
Sbjct: 267 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPG 326

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A ++ + RL+ L  NL R+ +    +   D  +          
Sbjct: 327 GKTTYIAALMKNSGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGHNTV 386

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  ++  +DI K A  Q++L+L  I  V    K GG +V+
Sbjct: 387 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDANSKSGGYIVY 446

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           S CS+   ++E V+   L+   + +    L      + +  +     S E   R  P + 
Sbjct: 447 STCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLEKTRRFYPHV- 505

Query: 421 EKIDGVSSGMDGFFAVALRRL--IQP 444
                    MDGFF   L+++   +P
Sbjct: 506 -------HNMDGFFVAKLKKMSNSKP 524


>gi|238485520|ref|XP_002373998.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
           flavus NRRL3357]
 gi|220698877|gb|EED55216.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
           flavus NRRL3357]
          Length = 751

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 23/318 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  +P  + +    ++ +  + A  L    + 
Sbjct: 264 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 323

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  VLD+ +A
Sbjct: 324 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASA 383

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  +DA    PK +  
Sbjct: 384 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTLVTHLDARTAFPKAMGG 443

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPC+ TG I + P V  ++   D +     QR+LLL  I  V    K GG +V
Sbjct: 444 FDRVLLDAPCTGTGVISKDPAVKTSKTERDFLAIPHMQRQLLLAAIDSVDHSSKTGGYIV 503

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ VLR  P  V++V      + S      +      ++T  M  +
Sbjct: 504 YSTCSVTVEENEAVVQYVLRKRPN-VKIVDTGLGDFGSPGFKEYMGKHFDAKMT--MTRR 560

Query: 423 IDGVSSGMDGFFAVALRR 440
                  +DGF+   L++
Sbjct: 561 YFPHRENVDGFYVCKLKK 578


>gi|169771881|ref|XP_001820410.1| ribosomal RNA methyltransferase Nop2 [Aspergillus oryzae RIB40]
 gi|83768269|dbj|BAE58408.1| unnamed protein product [Aspergillus oryzae]
          Length = 751

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 23/318 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  +P  + +    ++ +  + A  L    + 
Sbjct: 264 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 323

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  VLD+ +A
Sbjct: 324 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASA 383

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  +DA    PK +  
Sbjct: 384 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTLVTHLDARTAFPKAMGG 443

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPC+ TG I + P V  ++   D +     QR+LLL  I  V    K GG +V
Sbjct: 444 FDRVLLDAPCTGTGVISKDPAVKTSKTERDFLAIPHMQRQLLLAAIDSVDHSSKTGGYIV 503

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ VLR  P  V++V      + S      +      ++T  M  +
Sbjct: 504 YSTCSVTVEENEAVVQYVLRKRPN-VKIVDTGLGDFGSPGFKEYMGKHFDAKMT--MTRR 560

Query: 423 IDGVSSGMDGFFAVALRR 440
                  +DGF+   L++
Sbjct: 561 YFPHRENVDGFYVCKLKK 578


>gi|328767857|gb|EGF77905.1| hypothetical protein BATDEDRAFT_1711 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 445

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 143/345 (41%), Gaps = 37/345 (10%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           K +    R  S    +L++ IA       +  E+L + +    V+   +A      + + 
Sbjct: 112 KTMREADRSRSEYVDQLIKDIAYYYGYNHFLAEKLFHLFDLGEVIEFFEANEVARPVVIR 171

Query: 182 VKF---DIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASA 230
                      A  L    +    I        ++ + P  I + P +  G + +Q A++
Sbjct: 172 ANTLKTRRRDLAQCLINRGVNLEPIGKWSKVGIQVFDSPVPIGATPEYLAGHYMLQAAAS 231

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +PV      +N  +LD+CAAPGGKT  +   + +   + A D+SK RL+ L  N  R+ 
Sbjct: 232 FLPVMSLAPQSNERILDMCAAPGGKTTYIAALMKNTGCLFANDISKDRLKSLNANCHRMG 291

Query: 288 LYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +    +   D   +      FD VL+DAPCS TG I +   V   +  +D       Q++
Sbjct: 292 VRNTVVCCYDGKQFPNVIGGFDRVLLDAPCSGTGVISKDQSVKINKGDEDFQILTQIQKE 351

Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
           L+L  I  +      GG +V+S C++  +++EEV+   L   P             K +D
Sbjct: 352 LILSAIDSIDAHSSTGGYLVYSTCAITVEENEEVINYALNRRPN-----------VKLVD 400

Query: 403 MAMALSPEGWI-----RITPDM--LEKIDGVSSGMDGFFAVALRR 440
             +    EG+I     +  P M    +    +  MDGFF   L++
Sbjct: 401 SGLDFGREGFISFRGKQFHPSMALTRRYYPHTQNMDGFFVAKLKK 445


>gi|85691089|ref|XP_965944.1| nucleolar protein [Encephalitozoon cuniculi GB-M1]
 gi|19068511|emb|CAD24979.1| NUCLEOLAR PROTEIN (NOL1/NOP2 family) [Encephalitozoon cuniculi
           GB-M1]
          Length = 370

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 134/297 (45%), Gaps = 11/297 (3%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
            P    E       K+R + I    +     D+            L+A+     G  + +
Sbjct: 80  FPRKEVEAFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGV--DLDALSWTDSGCVVFK 137

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264
               I + P +  G + +Q A++ +PV        L+V+DLCAAPGGKT  +   + +  
Sbjct: 138 SSVPIGATPEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAALMENTG 197

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
            + A DV++ R+  L+ N+ R+ +    ++ MD       ++ D VL+DAPCS TG I +
Sbjct: 198 VIYANDVNEERIAGLKSNIQRMGVRNCIVMNMDGRKVNVGRV-DRVLLDAPCSGTGVISK 256

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P V  +R   +I +    Q++L+L G   +KPGGI+++S CS+  +++EEVV  +L   
Sbjct: 257 DPSVKTSRTRSEIDRMVTLQKELILHGFGMLKPGGILMYSTCSVLVKENEEVVNYLLSKC 316

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA-LRR 440
           P                      +  G ++    M  +I      MDGFF    L++
Sbjct: 317 PSAKMAECEIDIGKDGFMSFKGKNYNGSLK----MARRIYPHVHNMDGFFYAKILKK 369


>gi|260752276|ref|YP_003225169.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551639|gb|ACV74585.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 408

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 144/462 (31%), Gaps = 81/462 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  ++     +  +   L+   +    +     +D+  +R +V  
Sbjct: 1   MIP--QARVEAAIELLDQIIQAVRDEGSAADRLISQYFKTRRYAG--SKDRAAIRNLVYR 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R +   D  ++         +  +   LL         +            E AK  +
Sbjct: 57  AIREIG--DCPINGRAAMIQLAQNDAELALLFDG-----SMRAPAPISDKEFAEAAKISQ 109

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           +N                              +P W  E++             +A +  
Sbjct: 110 KNTSL---------------------------LPAWLAEKMAASDIDTA---EQNALLGR 139

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASA 230
             +D+     +      L A         L           +   P +  G   +QDA +
Sbjct: 140 APLDIRFNPHLTDIDTVLAAFPEGQVISGLPYAVRLREGTKVDQSPLWKSGAIEIQDAGS 199

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEKLRCN 282
                +    + + V+DLCA  GGK         A    +   + A D  + RL +L+  
Sbjct: 200 QWASSICQAQSGMKVIDLCAGAGGKSLALASDMLANNNAAKLNLIACDTDRNRLSRLQPR 259

Query: 283 LDRLHLYAEDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            +R  L   +   ++               D VL+DAPCS +GT RR+P+  W  ++  +
Sbjct: 260 AERAKLPPIEQRLLNPKQENKALGDLAHQADLVLIDAPCSGSGTWRRNPEARWRLNSTRL 319

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            +    Q  LL      V+P G +V+  CS+   +    +   L   P      P   A 
Sbjct: 320 QRVIDTQSHLLDVASQLVRPNGYLVYVVCSVLDDEGANQITAFLNRHPDWTVENPDIQA- 378

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                        G +R       +   +    DGFF   LR
Sbjct: 379 -------------GHLR---GDGRRFTVLQDKSDGFFVSRLR 404


>gi|330861820|emb|CBX71992.1| ribosomal RNA small subunit methyltransferase B [Yersinia
           enterocolitica W22703]
          Length = 292

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 134/297 (45%), Gaps = 19/297 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  +S V+ +  SL+ +L         + +S +D+ L++ +   TLR L
Sbjct: 1   MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----QKSISDKDRALLQELCFGTLRVL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++  +  ++   +  K+     L+ V + Q++Y  +  +A +   VE A   K  +  
Sbjct: 56  PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114

Query: 121 AKLVNSILRRVSREKI---ELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R+++   E         + P W   R++  Y  +    +  +    P+
Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSHYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174

Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229
           ++ +  +      +   L    +                P ++  LPGF  G   VQDAS
Sbjct: 175 WLRVSRLHHSRIEYLGLLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLD 284
           A   V L        +LDLCAAPGGKT  ++     A V A+D+ ++RL +++   +
Sbjct: 235 AQGCVDLLDPQEGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKETYN 291


>gi|328850880|gb|EGG00040.1| hypothetical protein MELLADRAFT_45567 [Melampsora larici-populina
           98AG31]
          Length = 468

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 132/342 (38%), Gaps = 27/342 (7%)

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
             A    +  +       +    I       E+    L   +G E  LA  +A  +   +
Sbjct: 27  WRALGSKAGGKSRIDLVTQTCSDICEYFGYNEFLASTLWELFGPEEALAFFEANETARPV 86

Query: 179 DLT---VKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQD 227
            +    ++ +    A  L    +    I                I + P +  G + +Q 
Sbjct: 87  TIRTNTLRTNRRDLAQCLINRGVNLEPIGKWSKVGLQVFESSVPIGATPEYLAGQYMLQA 146

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLD 284
           AS+ +PV       N   LD+ AAPGGKT  +           A D SK R + L  N+ 
Sbjct: 147 ASSFLPVIALAPQPNERCLDMSAAPGGKTTFMSAMMQNTGVLFANDASKNRCKSLMANVT 206

Query: 285 RLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           RL  +   I   DA ++      FD VL+DAPCS TG I +   V   +   D++  +  
Sbjct: 207 RLGCHNVVICNHDAREFPKVMGGFDRVLLDAPCSGTGVISKDASVKVNKSEKDLLLLSHL 266

Query: 344 QRKLLLQGISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
           Q++L+L  I  V P    GG +V+S CS+  +++E VV   LR  P  V+LV     + +
Sbjct: 267 QKQLILCAIDSVSPHSVKGGFLVYSTCSVTTEENESVVDYALRKRPN-VKLVESGLTFGR 325

Query: 400 SIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALR 439
                   +        P   +  +       +DGFF   LR
Sbjct: 326 -----EGFTNFRGKTFHPSLKLTRRFYPHVHNVDGFFVAKLR 362


>gi|195485322|ref|XP_002091044.1| GE12467 [Drosophila yakuba]
 gi|194177145|gb|EDW90756.1| GE12467 [Drosophila yakuba]
          Length = 902

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L +      ++   +A      + +            A  L    + 
Sbjct: 336 CLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVN 395

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  +LD+C+A
Sbjct: 396 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 455

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGK + +   + +   + A D ++ R++ +  N  RL +    +   D   +      F
Sbjct: 456 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 515

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TG + + P V  T+   D+ +    QRKLLL  I         GG +V+
Sbjct: 516 DRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVY 575

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E V+   L+     V+LVP    +          +     R  P  ++ +
Sbjct: 576 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 628

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGF+   L++
Sbjct: 629 RYYPHTHNMDGFYVAKLKK 647


>gi|194883628|ref|XP_001975903.1| GG20307 [Drosophila erecta]
 gi|190659090|gb|EDV56303.1| GG20307 [Drosophila erecta]
          Length = 897

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L +      ++   +A      + +            A  L    + 
Sbjct: 333 CLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVN 392

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  +LD+C+A
Sbjct: 393 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 452

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGK + +   + +   + A D ++ R++ +  N  RL +    +   D   +      F
Sbjct: 453 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 512

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TG + + P V  T+   D+ +    QRKLLL  I         GG +V+
Sbjct: 513 DRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVY 572

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E V+   L+     V+LVP    +          +     R  P  ++ +
Sbjct: 573 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 625

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGF+   L++
Sbjct: 626 RYYPHTHNMDGFYVAKLKK 644


>gi|22024126|ref|NP_610786.2| CG8545 [Drosophila melanogaster]
 gi|21627400|gb|AAF58504.2| CG8545 [Drosophila melanogaster]
 gi|254039763|gb|ACT56594.1| LD11307p [Drosophila melanogaster]
          Length = 891

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L +      ++   +A      + +            A  L    + 
Sbjct: 326 CLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVN 385

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  +LD+C+A
Sbjct: 386 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 445

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGK + +   + +   + A D ++ R++ +  N  RL +    +   D   +      F
Sbjct: 446 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 505

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TG + + P V  T+   D+ +    QRKLLL  I         GG +V+
Sbjct: 506 DRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVY 565

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E V+   L+     V+LVP    +          +     R  P  ++ +
Sbjct: 566 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 618

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGF+   L++
Sbjct: 619 RYYPHTHNMDGFYVAKLKK 637


>gi|57640807|ref|YP_183285.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
 gi|57159131|dbj|BAD85061.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           kodakarensis KOD1]
          Length = 309

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
                 W +  L      ER L       +       +   +     +   V     G  
Sbjct: 16  ERYYQLWGERALAIAEAMERPLPRCFRVNTLRIEVHKLTKLLNKKGFQFKRVPWAREGFC 75

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           L   P SI S P +  G+ ++Q+AS+  P    G      V D+ AAPGGKT+ +   + 
Sbjct: 76  LTREPFSITSTPEYLSGLLYIQEASSMYPPVALGPKPGEVVADMAAAPGGKTSYMAQLME 135

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320
           +G  + A DV + RL + R NL RL +    +    +         FD +L+DAPC+ +G
Sbjct: 136 NGGIIYAFDVGEDRLRETRLNLSRLGVTNTILFHSSSLHIDELGVEFDKILLDAPCTGSG 195

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           TI ++P+    R  +D+      Q KLL +G+S +K GG++V+S CSL+ +++E V+Q V
Sbjct: 196 TIHKNPERKANRTMEDVKFCQGLQMKLLEKGLSVLKKGGVLVYSTCSLEPEENEFVIQWV 255

Query: 381 LRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           L +    VEL+PL     A  K   + ++   +   R  PD          G  GFF   
Sbjct: 256 LDNF--EVELLPLRYGEPALTKPFGIELSEEIKKARRFYPD--------RHGTSGFFVAK 305

Query: 438 LRRL 441
           +++L
Sbjct: 306 IKKL 309


>gi|46123731|ref|XP_386419.1| hypothetical protein FG06243.1 [Gibberella zeae PH-1]
          Length = 678

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 149/371 (40%), Gaps = 40/371 (10%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + +   V    + AK  +E R   + V+ +L+ +                   +
Sbjct: 240 QLLRTRITENIRV--LDDFAKLSEEGRSRTEYVSQLLKDICSY-----------YGYSAY 286

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
             E+L N +      A  +A  S   + +    ++      A  L    +    +     
Sbjct: 287 LAEKLFNLFTPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSK 346

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                      + + P +  G + +Q AS+ +P        N  VLD+ +APGGKT  + 
Sbjct: 347 VGLQVFESSVPLGATPEYLAGHYILQAASSFLPCMALDPQENERVLDMASAPGGKTTYMS 406

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPC 316
             + +   V A D +K R + L  N+ RL      +   DA ++  P   FD VL+DAPC
Sbjct: 407 AMMKNTGIVVANDPNKARAKGLIGNIHRLGCRNVIVSNYDAREFPKPMGGFDRVLLDAPC 466

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQD 372
           S TG I + P V   +   D ++    Q++LLL  I  V    K GG +V+S CS+  ++
Sbjct: 467 SGTGVIAKDPSVKTNKTELDFMQLPHLQKQLLLAAIDSVNHASKTGGYIVYSTCSVTVEE 526

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGM 430
           +E+VV   L   P  V LV     + K        +     +  P   +  +    S  +
Sbjct: 527 NEQVVNYALSRRPN-VRLVDAGLTFGK-----EGFTSYMGKKFDPSVSLTRRFYPHSLNV 580

Query: 431 DGFFAVALRRL 441
           DGF+    +++
Sbjct: 581 DGFYVAKFQKI 591


>gi|311029974|ref|ZP_07708064.1| sun protein [Bacillus sp. m3-13]
          Length = 275

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 17/244 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +  L  ++     F  G   +QD S+ +  +  G   +  V D CAAPGGKT  +     
Sbjct: 43  IVSLKGNMAYSNAFKNGYMTIQDESSMLVARALGVEKDDFVYDCCAAPGGKTTHIAELLK 102

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSS 318
              +V + D+ + +++ ++   +RL L   +   +D+    +   ++ FD +LVDAPCS 
Sbjct: 103 DSGRVISTDLHEHKVKLIKDQAERLQLSNIEAQALDSRKAQEIFKEEQFDKILVDAPCSG 162

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G IRR PD+ +T+   DI + A  Q  +L +    VK GG +V+S C++DK+++ +VVQ
Sbjct: 163 FGVIRRKPDLKYTKSMQDIKQLASIQLAILKEVAPLVKKGGTLVYSTCTIDKEENADVVQ 222

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             L ++        +     + ++   +   EG +++ P           G DGFF V L
Sbjct: 223 AFLEANKEFEIDFNIKELLPEKVN---SYVKEGMLQLLPHYF--------GTDGFFIVRL 271

Query: 439 RRLI 442
           +R +
Sbjct: 272 KRQV 275


>gi|328874823|gb|EGG23188.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
          Length = 713

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 128/319 (40%), Gaps = 27/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
           A       +  E     +     L   +A  +   + +         +  A  L    + 
Sbjct: 285 ATYFGYNTFLIEVFLKLFRVSECLEFLEANETQRPLTIRTNTLKARRKDLADALGGRGVH 344

Query: 200 TGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
              I+       + +   +I + P +  G +  Q AS+ +PV          +LDLCA+P
Sbjct: 345 LEPIKWSPVGLTIYDTQVAIGATPEYLAGHYIQQSASSFLPVVALEPQPGERILDLCASP 404

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FD 308
           GGKT  +   + +   + A D+++ R+  L  N+ RL +    +  +D  +Y      FD
Sbjct: 405 GGKTTYVAALMKNTGTLVANDINEERMRSLVANIHRLGVKNTIVSNLDGREYPKTMGGFD 464

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFS 364
             LVDAPC   G I +   +  ++   D+      Q++L+L  I  V      GGI+V+S
Sbjct: 465 RCLVDAPCVGLGVIAKDQQIKLSKSQRDVDLCVNMQKELILHAIDSVDAKSPTGGIIVYS 524

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEK 422
            CSL  +++E VV   LR+    V L+     +          +     R  P   + ++
Sbjct: 525 TCSLTVEENEGVVDYALRNR--DVILLDTGVEFGV-----QGFTAYRHHRFHPSVALTKR 577

Query: 423 IDGVSSGMDGFFAVALRRL 441
               +  MDGF+    +++
Sbjct: 578 YYPHTHNMDGFYVAKFKKI 596


>gi|326468870|gb|EGD92879.1| nucleolar protein NOP2 [Trichophyton tonsurans CBS 112818]
          Length = 690

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + +   +  +  A   + +L  +                   +
Sbjct: 238 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 284

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      +  +A  SP  I +    ++ +  + A  L    +    +     
Sbjct: 285 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 344

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  +LD+ AAPGGKT    
Sbjct: 345 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 404

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   + A D SK R + L  N+ RL      +  MDA    PK +  FD VL+DAP
Sbjct: 405 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGGFDRVLLDAP 464

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 465 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHTSKTGGYIVYSTCSVTVE 524

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + +      ++ +   R  P +  +       +D
Sbjct: 525 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMNKKFDDR-MP-LTRRYYPHRENVD 581

Query: 432 GFFAVALRR 440
           GFF   L++
Sbjct: 582 GFFVCKLKK 590


>gi|237837991|ref|XP_002368293.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211965957|gb|EEB01153.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
           ME49]
          Length = 804

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 120/322 (37%), Gaps = 25/322 (7%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG 201
                    E     +  +   A  +A      + L            A  L A      
Sbjct: 280 YYQYRPELVEYFLQLFKPQEAYAFFEANEENRPMTLRTNSLKTRRRDLAAALIARGCNVD 339

Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            +                + + P +  G + +Q A++ IPV          V+D+ AAPG
Sbjct: 340 PLGEWTKVGLKVYESTVPVGATPEYLAGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPG 399

Query: 254 GKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDA 309
           GKT  +     +   + A D  K R   L  NL RL +    +  +D           D 
Sbjct: 400 GKTTYIAQLLKNEGILFANDAKKERCTSLMANLHRLGVTNCIVSCVDGRTLPTMLPPMDR 459

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSN 365
            L+DAPC+ +G I R P +   R  +D  + +  Q++LL   +  V      GG +V+S 
Sbjct: 460 ALLDAPCTGSGIIARDPSIKVKRKPEDFAEHSKLQKQLLCAAVDAVNADSPTGGYIVYST 519

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+  +++E+VV  +L +    V+LVPL       +        + +    P    +   
Sbjct: 520 CSVSVEENEQVVDYILTAR--NVKLVPLGVDI--GVPGLSGFRGQQFHNSVPLYTRRFYP 575

Query: 426 VSSGMDGFFAVALRRLI--QPK 445
             +  DGFF    ++L   +P+
Sbjct: 576 HVNNFDGFFVAKFKKLSNKKPE 597


>gi|225461969|ref|XP_002266863.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 633

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 34/326 (10%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                E+    L   +    ++ + +A   P  I L            A  L    +   
Sbjct: 205 YYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLD 264

Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            +                I + P +  G + V  AS+ +PV          ++D+ AAPG
Sbjct: 265 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMVSGASSFLPVMALAPQEKERIVDMAAAPG 324

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A ++ + RL+ L  NL R+ +    +   D  +          
Sbjct: 325 GKTTYIAALMKNSGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGHNTV 384

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  ++  +DI K A  Q++L+L  I  V    K GG +V+
Sbjct: 385 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDANSKSGGYIVY 444

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           S CS+   ++E V+   L+   + +    L      + +  +     S E   R  P + 
Sbjct: 445 STCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLEKTRRFYPHV- 503

Query: 421 EKIDGVSSGMDGFFAVALRRL--IQP 444
                    MDGFF   L+++   +P
Sbjct: 504 -------HNMDGFFVAKLKKMSNSKP 522


>gi|156383674|ref|XP_001632958.1| predicted protein [Nematostella vectensis]
 gi|156220021|gb|EDO40895.1| predicted protein [Nematostella vectensis]
          Length = 415

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 123/319 (38%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP 199
                  E+  E+    +    ++   +A      + +            A  L    + 
Sbjct: 93  CTYYSYGEFLMEKFLEMFQLNELIEFLEANEVHRPVTIRTNSLKTRRRDLAQALINRGVN 152

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q +S+ +PV          VLD+CAA
Sbjct: 153 LDPVGKWSKVGLVVYDSSVPIGATPEYLAGHYMIQGSSSMLPVMALAPQEKERVLDMCAA 212

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  L   + +   V A D  K R + L  N+ RL +    +   D   +      F
Sbjct: 213 PGGKTTYLAALMKNTGIVVANDAKKERTKALVANIHRLGVTNTVVCNYDGRAFPKVMGGF 272

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D  L+DAPCS TG I + P V   +   DI++ +  Q++L+L  I  V      GG +V+
Sbjct: 273 DRTLLDAPCSGTGVISKDPSVKTNKTEKDILRCSHVQKELILAAIDSVDAKSPTGGYIVY 332

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
           S CS+  ++ E VV   L      V+LVP    + +        S        P   +  
Sbjct: 333 STCSIMVEEDEWVVDYALSKR--HVKLVPTGLDFGR-----EGFSKFRGRHFHPSLKLTR 385

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  MDGFF   L++
Sbjct: 386 RFYAHAHNMDGFFVAKLKK 404


>gi|119499195|ref|XP_001266355.1| nucleolar RNA methyltransferase (Nop2), putative [Neosartorya
           fischeri NRRL 181]
 gi|119414519|gb|EAW24458.1| nucleolar RNA methyltransferase (Nop2), putative [Neosartorya
           fischeri NRRL 181]
          Length = 750

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 138/318 (43%), Gaps = 23/318 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  +P  + +    ++ +  + A  L    + 
Sbjct: 271 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 330

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  VLD+ AA
Sbjct: 331 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAA 390

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  +DA    PK    
Sbjct: 391 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKALGG 450

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPC+ TG I + P V  +++  D +     QR LLL  I  V    K GG +V
Sbjct: 451 FDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRNLLLAAIDSVDHASKTGGYIV 510

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ VLR  P  V+LV      + S      +  +   ++T  +  +
Sbjct: 511 YSTCSVTVEENEAVVQYVLRKRPN-VKLVDTGLGDFGSPGFTSYMGKKFDPKMT--LTRR 567

Query: 423 IDGVSSGMDGFFAVALRR 440
                  +DGFF   L++
Sbjct: 568 YFPHRENVDGFFVCKLKK 585


>gi|70985320|ref|XP_748166.1| nucleolar RNA methyltransferase (Nop2) [Aspergillus fumigatus
           Af293]
 gi|66845794|gb|EAL86128.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
           fumigatus Af293]
 gi|159125911|gb|EDP51027.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
           fumigatus A1163]
          Length = 751

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 137/318 (43%), Gaps = 23/318 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  +P  + +    ++ +  + A  L    + 
Sbjct: 271 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 330

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  VLD+ AA
Sbjct: 331 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAA 390

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  +DA    PK    
Sbjct: 391 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKALGG 450

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPC+ TG I + P V  +++  D +     QR LLL  I  V    K GG +V
Sbjct: 451 FDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRNLLLAAIDSVDHASKTGGYIV 510

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ  LR  P  V+LV      + S      +  +   ++T  +  +
Sbjct: 511 YSTCSVTVEENEAVVQYALRKRPN-VKLVDTGLGDFGSPGFTSYMGKKFDPKMT--LTRR 567

Query: 423 IDGVSSGMDGFFAVALRR 440
                  +DGFF   L++
Sbjct: 568 YFPHRENVDGFFVCKLKK 585


>gi|85708834|ref|ZP_01039900.1| tRNA and rRNA methylase [Erythrobacter sp. NAP1]
 gi|85690368|gb|EAQ30371.1| tRNA and rRNA methylase [Erythrobacter sp. NAP1]
          Length = 393

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 96/453 (21%), Positives = 148/453 (32%), Gaps = 77/453 (16%)

Query: 1   MKSGMNAR-LVSSHLLSCVMR----KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  ++     K      L+   +    +     +D+  VR +V  
Sbjct: 1   MTP--AARVQAAIELLDAIIEGARNKGAPADRLISEYFKARRYAG--SKDRRAVRELVYR 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R            L   +P    S    L                             
Sbjct: 57  AVR------------LCGPVPADGRSAMLAL----------------------------- 75

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            NR  + +          + I   +  A   + P W  ERL    G E   A++    +P
Sbjct: 76  SNRDESLVPLFDGSTHGPQTIAPNETSAETGVAPHWLIERLSIS-GIESDEAMALLDRAP 134

Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
           L I +   K D  T         L             +     + +G+  +QD  +    
Sbjct: 135 LDIRVNALKADRGTIELPEEGEPLIASQGLRFASGTQVEQWREWRDGLVEIQDHGSQWVC 194

Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
           +        +V+DLCA  GGKT   A    +   + A D  KRRL  L     R     +
Sbjct: 195 EAVLAQPGDAVIDLCAGAGGKTLALAARFGNAVSLIAADTDKRRLGNLAPRASRAGAQVD 254

Query: 292 DIIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
             + ++               D VLVDAPCS +GT RR+P+  W  D  ++V+    Q  
Sbjct: 255 HTVLLNPGREIEALEPWVGKADHVLVDAPCSGSGTWRRNPESRWRLDKAELVRFTKLQAH 314

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L      V+PGG + F  CSL  ++    V   L                 + +++ + 
Sbjct: 315 VLDIAAKLVRPGGSITFVTCSLLDEEGSGQVDAFLDRHSGW---------EAEGLELPVG 365

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                 IR+TP           G DGFF   LR
Sbjct: 366 RRRGKGIRLTP--------YHDGTDGFFVANLR 390


>gi|99081068|ref|YP_613222.1| Fmu (Sun) [Ruegeria sp. TM1040]
 gi|99037348|gb|ABF63960.1| Fmu (Sun) [Ruegeria sp. TM1040]
          Length = 391

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 92/452 (20%), Positives = 150/452 (33%), Gaps = 77/452 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L  ++    ++   L      S F     +D+  VR  V   LR 
Sbjct: 1   MTPG--ARVQAAIEILDEILA-GQAVEKTLTNWARRSRFAG--SKDRAAVRDHVYQALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 +                   L +                D  ++QA       H
Sbjct: 56  RRSYAVLGGSETGRG-----------LMLGA------------CKDQGLDQAVLFHGEGH 92

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
               +++  + ++ E        A    IPEW         G E  +A + A  S   + 
Sbjct: 93  APSPLSAAEQSIAPEFHSD----AERHDIPEWLWPVFSRSLGTE-AIAAATALRSRAAVH 147

Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDAS 229
           L V     D +    +L    + T           + E    I +   + +G   +QDA+
Sbjct: 148 LRVNLLKGDRDNAIKRLTREGIATEPHPASPTALTVTEGARRIKNAESYLQGFVELQDAA 207

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   V      N   +LD C+  GGK  A    + A+V A D   RR+  +     R   
Sbjct: 208 SQAVVDKLPVQNAPRILDYCSGGGGKALAIAAQTQAEVYAHDADPRRMRDIPERAMRAGA 267

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I  + + +   +  FD VL DAPCS +G+ RR P+  W    D +  +   Q ++L
Sbjct: 268 D---IRCLTSEELVTQAPFDLVLCDAPCSGSGSWRRDPEGKWRLTQDTLDDTVALQARIL 324

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    V PGG++ F+ CS+   ++    Q+                             
Sbjct: 325 DEAAQRVAPGGVLAFATCSMLDVENSLQTQRFQERHTGWA-------------------- 364

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     + E    V SG DGF+    RR
Sbjct: 365 ---------HLSETAWHVHSGTDGFYVSVFRR 387


>gi|212275840|ref|NP_001130579.1| hypothetical protein LOC100191678 [Zea mays]
 gi|194689536|gb|ACF78852.1| unknown [Zea mays]
          Length = 718

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 125/318 (39%), Gaps = 26/318 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                ++  E L   +    ++ + +A        L            A  L        
Sbjct: 235 YYGYNDFLVEALIEMFPAVELVELLEAFEKRPPECLRTNTLKSRRRDLAAALIPRGFNLD 294

Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I        +         +   +  G +  Q AS+ +PV          ++D+ AAPG
Sbjct: 295 PIGKWSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 354

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A + +++RL  L  N+ R+ +    I   D  +          
Sbjct: 355 GKTTYIGALMKNTGIIYANEFNEKRLHGLMGNIHRMGVTNTIICNYDGKELPKVLGMNSV 414

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TGTI +   +  ++D +DI   A  Q++LLL  I  V    K GG +V+
Sbjct: 415 DRVLLDAPCTGTGTIWKDLQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDANSKTGGYIVY 474

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS+   ++E V+   L+     V+LVP    + +          E     + +   + 
Sbjct: 475 STCSIMIPENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRYREHRFHTSLEKTRRF 529

Query: 424 DGVSSGMDGFFAVALRRL 441
               + MDGFF   L++L
Sbjct: 530 YPHVNNMDGFFVAKLKKL 547


>gi|152981119|ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp.
           Marseille]
 gi|151281196|gb|ABR89606.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp.
           Marseille]
          Length = 437

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 180/442 (40%), Gaps = 51/442 (11%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
           + ++L   L   +  +     + + +  ++ +    +R + R +A+L+ +          
Sbjct: 26  RGVALPQALAQIFAQTHA---TPQARGAIQDLSYHCMRHIGRAEALLNAMTTKQTE--PA 80

Query: 81  SLQQLLRVSVAQILYLDVA-------DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            L  LL  ++A I   D A        + VVD AV  A  D +  H   +VN++LRR  R
Sbjct: 81  ILHGLLCCALALISDPDEAESEARYSAFTVVDQAVTAAAADPDMAHAKGMVNAVLRRFLR 140

Query: 134 EKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET- 188
           E+                 P+W+ +R+ + Y +    AI +A  +   + L V     T 
Sbjct: 141 ERDALLKSAGGTQFARWNYPDWWIDRMRSAYPQNW-QAILEAGNAAPPLTLRVNRRKTTV 199

Query: 189 ------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
                  A +  A             P  +  +PGF EG+  VQDA+A +   L    + 
Sbjct: 200 DAYLALLAEQSVAATRIGPDAVKLAQPTPVGQIPGFNEGLVSVQDAAAQLAASLLDLRDG 259

Query: 243 LSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFD 300
           + VLD CAAPGGK+  +   +  ++ ALD   RR+ ++  NL+RL L A     +  A D
Sbjct: 260 MRVLDACAAPGGKSGHILESADVELIALDNEARRMPRIAENLERLQLQATLLTGDASATD 319

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           +   K FD +L D PC+++G +RRHPD+ W R   D  + A     +L      ++P G 
Sbjct: 320 WWDGKPFDRILADVPCTASGIVRRHPDIRWLRRKGDTTQLAAISATILDNLWQMLQPDGK 379

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           ++F  CSL  Q+SE         +       P                     ++ P   
Sbjct: 380 LLFVTCSLWPQESEAQAAAFAVRNNATRLPAPG--------------------QLLP--- 416

Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
                  S  DG F    ++ +
Sbjct: 417 --TANAESDHDGLFYALFQKTV 436


>gi|328955666|ref|YP_004372999.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2]
 gi|328455990|gb|AEB07184.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2]
          Length = 470

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 165/459 (35%), Gaps = 54/459 (11%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78
            ++ + +  LLD    D   R L +RD      +          +D V+D  L     R 
Sbjct: 22  YQRGVHVRELLDGVARD---RHLDRRDAAFAMRLALGATVTSGALDEVIDMHLDHP-RRV 77

Query: 79  KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
              ++  LR++  +++YL+      V   VE        R    L N++LRRV+  +   
Sbjct: 78  SARVRIALRIAAFELIYLERPPAVAVSQGVELVGSI--ARSATGLANAVLRRVATSRRSY 135

Query: 139 ------------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
                       +  +A  + +P W    +E   G E    + D  ++   I + +    
Sbjct: 136 LAAADAPLKDRRVVSLARCAGMPVWLAGAIEGSLGPELAGRLFDTQLTAAPIAIHLNPLR 195

Query: 187 ETWA-HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           E+    K+   +   G       PE + S              +  I           + 
Sbjct: 196 ESADFAKVLGSIELPGCAGPVPGPELLASSALERGDAVVSDAVAQLIATAATAV---GTC 252

Query: 246 LDLCAAPGGKTAQLIVSGAK------VTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDA 298
           L++ +  G KT  +     +        ALD+  RR E     L R  L      +  D 
Sbjct: 253 LEIGSGRGTKTFVMASQAHRAGFARHHVALDIDSRRAESCGQRLRRAGLDEGVRTLVADG 312

Query: 299 FD-------YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS-ACFQRKLLLQ 350
            D          ++LF+ V VDAPCS TGT+RRHP++ W     D+ +     QR LL  
Sbjct: 313 CDLEGALGDSDRRRLFETVFVDAPCSGTGTMRRHPEICWRLRPCDVERGLPDLQRALLAS 372

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVL------RSSPIPVELVPLNSAYWKSIDMA 404
             S V  GG +++S CS+   ++++V+   L            V   P+  +   +    
Sbjct: 373 AASRVAMGGQLLYSTCSVLSSENDDVIDDFLGGETGRAFRLDRVSAAPILRSAGFADAKR 432

Query: 405 MALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A + E   G ++            +   DG F   L R
Sbjct: 433 FAETLESARGTLQ--------SVPRTGDFDGHFCARLIR 463


>gi|241173797|ref|XP_002410886.1| nucleolar protein, putative [Ixodes scapularis]
 gi|215495039|gb|EEC04680.1| nucleolar protein, putative [Ixodes scapularis]
          Length = 420

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 19/247 (7%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           +      + + P +  G + +Q A++ +PV       N  +LD+CAAPGGKT  +   + 
Sbjct: 33  VYNSQVPVGATPEYLAGHYVLQGAASMLPVMALAPQENERILDMCAAPGGKTTHIAAIMK 92

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320
           +   + A ++ + R + +  NL RL +    +   D   +      FD VL+DAPCS TG
Sbjct: 93  NTGLLFANELHQERCKAIIGNLHRLGVNNTIVCSYDGRKFPEVVKGFDRVLLDAPCSGTG 152

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV-----KPGGIVVFSNCSLDKQDSEE 375
            + + P V   ++  DI++ +  Q++L+L  I        KP G +V+S CS+  +++E 
Sbjct: 153 VVSKDPAVKTNKEEKDILRCSQLQKQLILAAIDCADCSDNKP-GYIVYSTCSVMPEENEW 211

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGF 433
           V+   L+     V+LVP    + +       L+     R  P  +   +    +  M+GF
Sbjct: 212 VIDYALKKR--NVKLVPTGLDFGR-----EGLTRYREYRFHPSLNRTRRFYPHAHNMEGF 264

Query: 434 FAVALRR 440
           F   L++
Sbjct: 265 FVAKLKK 271


>gi|229544321|ref|ZP_04433380.1| Fmu (Sun) domain protein [Bacillus coagulans 36D1]
 gi|229325460|gb|EEN91136.1| Fmu (Sun) domain protein [Bacillus coagulans 36D1]
          Length = 458

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 19/248 (7%)

Query: 203 IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--- 259
               E  +     P  A G++++Q+ SA       G      VLDLCAAPGGK+ Q+   
Sbjct: 63  YYFDEEKDKPGKHPYHAAGLYYIQEPSAMFIAGQLGLEKGDKVLDLCAAPGGKSTQIASG 122

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCS 317
           I     + A ++  +R+  L  N++RL      +     +      +  FD +LVDAPCS
Sbjct: 123 IGENGFLLANEIHPKRVRALSENIERLGFSNTVVTNETPEKLSRHFENYFDKILVDAPCS 182

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P+       + +   A  QR +L      +KPGG +V+S C+   +++E+ +
Sbjct: 183 GEGMFRKDPEAARFWSQEHVEACAQKQRAILEHAWKMLKPGGTLVYSTCTFSPEENEQTI 242

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGMDG 432
           +  L      + LVP+   +          + +        R+ P  L+          G
Sbjct: 243 EAFLARH-EDMALVPIPHEHGVGPGKPEWATEKRQDLSNAARLWPHRLKGE--------G 293

Query: 433 FFAVALRR 440
            FA  +R+
Sbjct: 294 HFAAKMRK 301


>gi|58263482|ref|XP_569151.1| nucleolus protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134108332|ref|XP_777117.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259802|gb|EAL22470.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223801|gb|AAW41844.1| nucleolus protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 695

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 132/338 (39%), Gaps = 25/338 (7%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
             +  S   ++L   IA       +   +L   +  +  LA  ++  SP  + +      
Sbjct: 289 PGKSRSDHMLQLQHDIATYFGYNTFLVGKLMKLFAADEALAFFESNESPRPVTIRANTLR 348

Query: 185 -DIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 A  L    +    I        ++ E P  I + P +  G + +Q AS+ +PV 
Sbjct: 349 TRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPIGATPEYLAGHYMLQAASSFLPVI 408

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                 N  VLD+ +APGGKT  +     +   V A D +K R + L  N+ R+      
Sbjct: 409 ALAPQPNERVLDMASAPGGKTTYISALLQNTGIVFANDSNKARTKSLTANVHRMGCKNVV 468

Query: 293 IIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +   DA ++      FD VL+DAPCS TG I +   V   +   D    A  Q++L+L  
Sbjct: 469 VCNYDAREFPKVMGGFDRVLLDAPCSGTGVISKDASVKVNKTERDFQLLAHLQKQLILCA 528

Query: 352 ISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           I  V P    GG VV+S CS+   ++E VV   LR  P     V L              
Sbjct: 529 IDSVNPNSSTGGYVVYSTCSVTVDENESVVDYALRKRPN----VKLVETGLDFGVHGFKS 584

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                   +  +  +       MDGFF    +  ++P+
Sbjct: 585 FEGKNFHSSVSLTRRFYPHKHNMDGFFVAKFK--VEPR 620


>gi|326334933|ref|ZP_08201134.1| sun protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692970|gb|EGD34908.1| sun protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 405

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 159/459 (34%), Gaps = 77/459 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   N           +  + +    +++             +D+  +   +   +R+L
Sbjct: 1   MRLHRNLVDAVVDGFMQINNEGLYADKVIERLLKRDKRWG--SKDRAFIAETLYELVRYL 58

Query: 61  PRIDAVLDFVLISSLPRKKYS--LQQLLR-VSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                +    +  ++   +    +  +LR +S+ +  +    +                 
Sbjct: 59  RLYSEIATEKVPYTVQSSRRVFAVWAVLRGISLPEWYFEGTPE----------------- 101

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                      RR+     EL         +P+W      +  G+E   A   A      
Sbjct: 102 -----------RRIKGRFDELSHERKYRESVPDWLDTLGASELGEEAWSAELHALNQIAP 150

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDA 228
           + L         E     L A    T  +R      +     ++     F +G++ +QDA
Sbjct: 151 VVLRANTLKTTPEELQKILLAQGYETERLRGIPDALVLAKRANLFLTDAFKQGLFELQDA 210

Query: 229 SASIPVQLFGTLNNL----SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281
           S+     L     +      + D CA  GGKT     L+    ++ A+D+  ++L++L  
Sbjct: 211 SSQRVAPLLLQDLDKGKSLKIADCCAGAGGKTLHLAALMQGKGRLVAMDLYPQKLQELSR 270

Query: 282 NLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
              R   +  +   ++       +  FDAVL+DAPCS  G +RR+PD  W    + + + 
Sbjct: 271 RAKRNGAFNIETRLIEPKYLKRHRGAFDAVLIDAPCSGLGVLRRNPDAKWKLTPEFLDQI 330

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QR++L Q  S V  GG +V++ CS+   ++   VQ  L+SS                
Sbjct: 331 RTTQREILQQYSSLVGEGGTLVYATCSVLPSENHLQVQAFLQSSK--------------- 375

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                +L  E  I             + G DGF+   ++
Sbjct: 376 -GSDFSLVEERMI-----------SATEGFDGFYIAKMK 402


>gi|326480150|gb|EGE04160.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Trichophyton equinum CBS
           127.97]
          Length = 690

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + +   +  +  A   + +L  +                   +
Sbjct: 238 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 284

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      +  +A  SP  I +    ++ +  + A  L    +    +     
Sbjct: 285 LAEKLFSLFTPMEASSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 344

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  +LD+ AAPGGKT    
Sbjct: 345 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 404

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   + A D SK R + L  N+ RL      +  MDA    PK +  FD VL+DAP
Sbjct: 405 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGGFDRVLLDAP 464

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 465 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHTSKTGGYIVYSTCSVTVE 524

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + +      ++ +   R  P +  +       +D
Sbjct: 525 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMNKKFDDR-MP-LTRRYYPHRENVD 581

Query: 432 GFFAVALRR 440
           GFF   L++
Sbjct: 582 GFFVCKLKK 590


>gi|261214774|ref|ZP_05929055.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
 gi|260916381|gb|EEX83242.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
          Length = 252

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + G+ ARL ++ LL  V+ K  SL  L D  +G   +  L  RD+ LVRAI+   LR   
Sbjct: 26  RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            I+  ++  L   LP    +L+ LL V+VAQI YLD+ D++ VDLAVE A  D  NR +A
Sbjct: 86  SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145

Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            LVN++LRR    ++  L       + +PEWF + + + YG E+   I         ID 
Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           TVK D + WA KL  V LP G +RL+ +  ++  LPGFAEG WW
Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWW 249


>gi|330818681|ref|YP_004362386.1| Sun protein [Burkholderia gladioli BSR3]
 gi|327371074|gb|AEA62430.1| Sun protein [Burkholderia gladioli BSR3]
          Length = 476

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 99/412 (24%), Positives = 171/412 (41%), Gaps = 30/412 (7%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSV----AQILYLDVADY 101
           +  ++ I    +R L   + ++  ++  + P    +L       +    A+  Y     +
Sbjct: 77  RGAIQDIAYRAMRRLGTAEWLVGALVSKAPPEHVRALLACALALLLDDEAEAAYT---PF 133

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWFKERLE 157
            VVD AV      +E      LVN++LRR  RE+     +             W+ + +E
Sbjct: 134 TVVDQAVTAVGARREFAFAKGLVNAVLRRFLRERETFAAQWQADRGARWNYRGWWIDAVE 193

Query: 158 NFYGKERVLAISDACISPL-YIDLTVKF-DIETWAHKLNAVMLPTGGIRLKE----LPES 211
             + +     ++ A       + +  +  D++ +   L    +    +         P  
Sbjct: 194 RAWPEHWQSILAAAERPGPLTLRVNARHTDVDAYLATLREHGIEADAVGRHAVRLASPLP 253

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALD 270
           +  +PGFA+GV  VQDA A +  +  G  + + VLD CAAPGGKT  L+  +  +V AL+
Sbjct: 254 VDRIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHLLELADVEVVALE 313

Query: 271 VSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
               R E++  NL RL L AE           +   + FD +L D PCS++G +RRHPD+
Sbjct: 314 SDATRAERIGENLARLKLAAEVRVGDAGAPEAWHDGRAFDRILADVPCSASGIVRRHPDI 373

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            W R   DI      QR++LL     +KPGG +++  CS+  ++ E+  +    +    V
Sbjct: 374 RWLRREADIAALVAEQRRILLALWPLLKPGGELLYVTCSIFPEEGEQQARWFEDAVQDAV 433

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            L        ++             R+  D         +  DGFF    ++
Sbjct: 434 RLDAPGQLLPRAAAS----------RLPGDAGHDEAARQADHDGFFYARFQK 475


>gi|222423014|dbj|BAH19490.1| AT5G55920 [Arabidopsis thaliana]
          Length = 625

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 21/250 (8%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           + +    I + P +  G + +Q AS+ +PV       N  ++D+ AAPGGKT  +   + 
Sbjct: 323 IYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMK 382

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318
           +   + A ++   RL+ L  NL R+ +    +   D  +      +   D VL+DAPCS 
Sbjct: 383 NTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSG 442

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374
           TG I +   V  T+  D+I K A  Q++LLL  I  V    K GG +V+S CS+   ++E
Sbjct: 443 TGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTENE 502

Query: 375 EVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
            V+   L+   + +    L      + +  +     S +   R  P +          MD
Sbjct: 503 AVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYPHV--------HNMD 554

Query: 432 GFFAVALRRL 441
           GFF   L+++
Sbjct: 555 GFFVAKLKKM 564


>gi|30696661|ref|NP_850927.1| nucleolar protein, putative [Arabidopsis thaliana]
 gi|9758212|dbj|BAB08657.1| nucleolar protein-like [Arabidopsis thaliana]
 gi|332009316|gb|AED96699.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana]
          Length = 682

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 21/250 (8%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           + +    I + P +  G + +Q AS+ +PV       N  ++D+ AAPGGKT  +   + 
Sbjct: 323 IYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMK 382

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318
           +   + A ++   RL+ L  NL R+ +    +   D  +      +   D VL+DAPCS 
Sbjct: 383 NTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSG 442

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374
           TG I +   V  T+  D+I K A  Q++LLL  I  V    K GG +V+S CS+   ++E
Sbjct: 443 TGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTENE 502

Query: 375 EVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
            V+   L+   + +    L      + +  +     S +   R  P +          MD
Sbjct: 503 AVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYPHV--------HNMD 554

Query: 432 GFFAVALRRL 441
           GFF   L+++
Sbjct: 555 GFFVAKLKKM 564


>gi|156936862|ref|YP_001434658.1| ribosomal RNA methyltransferase NOP2 [Ignicoccus hospitalis KIN4/I]
 gi|156565846|gb|ABU81251.1| ribosomal RNA methyltransferase NOP2 [Ignicoccus hospitalis KIN4/I]
          Length = 326

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 13/261 (4%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +E+    L  V+       +   P S+ S P   +G +++QD ++++P  + G     +V
Sbjct: 74  LESRGFVLKQVLWCPHAYEVLREPFSLSSTPEHLDGWFYIQDKASTLPPLVLGPKPGETV 133

Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            DL +APGGK   L   + +  ++  ++  + R + L  NL+R+ +   ++I  DA++  
Sbjct: 134 ADLASAPGGKATHLAQLMGNSGRLILIERRRDRAKALMSNLERMEILNANVIIDDAYNAS 193

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD  L+DAPC+  G I R P    +R  +D+      Q  LL + +  +KPGG +V
Sbjct: 194 KYGPFDKALLDAPCTGEGVIARDPSRKRSRRPEDLALMHKVQAMLLNRALDSLKPGGELV 253

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDML 420
           +S CS+  +++E V++ +L++      L    +      +      P      R+ P + 
Sbjct: 254 YSTCSIAPEENELVIETILKTRDDVEVLDGGEAGSPGIEEYLGWEFPFAYKCRRLWPHV- 312

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                   G +GFF   LR+L
Sbjct: 313 -------HGSEGFFVCKLRKL 326


>gi|310794553|gb|EFQ30014.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001]
          Length = 741

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 27/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                  E+  E+L N +      A  +A  S   + +    ++      A  L +  + 
Sbjct: 268 CAYYGYSEYLAEKLFNLFSPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALISRGVT 327

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +        ++ E    + + P +  G + +Q AS+ +PV       N  VLD+ AA
Sbjct: 328 LEPVGKWSKVGLQIFESNVPLGATPEYLAGYYILQAASSFLPVMALEPQENERVLDMAAA 387

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLF 307
           PGGKT  +   + +   + A D SK+R + L  N+ RL      +   DA ++  P   F
Sbjct: 388 PGGKTTHMAAMMKNTGVIVANDPSKQRAKGLIGNIHRLGARNVVVSNYDAREFPKPMGGF 447

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V   +   D +     Q++L+L  I  V    K GG +V+
Sbjct: 448 DRVLLDAPCSGTGVIAKDASVKTNKTERDFMLLPHMQKQLILAAIDSVNHHSKTGGYIVY 507

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
           S CS+  +++E VVQ  L   P  V LV  N  + +        +     +  P   +  
Sbjct: 508 STCSVTVEENEAVVQYALSRRPN-VRLVDTNLPFGR-----EGFTSYMGKKFDPSLKLTR 561

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    +  +DGFF    ++
Sbjct: 562 RYYPHTYNVDGFFVAKFQK 580


>gi|170697712|ref|ZP_02888799.1| sun protein [Burkholderia ambifaria IOP40-10]
 gi|170137327|gb|EDT05568.1| sun protein [Burkholderia ambifaria IOP40-10]
          Length = 462

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 168/444 (37%), Gaps = 48/444 (10%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
           R+  +L   L   +            +   + +   T+R L   D ++  ++  + P   
Sbjct: 43  RRGTALPAALAAVFAQMP-AGAQALARGATQDVAYRTMRRLGSADWLIGRLVGKAPPAHV 101

Query: 80  YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            ++              +           + +VD AV      +E      LVN++LRR 
Sbjct: 102 QAVLAGALALLLDPEETAAY-------PAFTIVDQAVTVIGARREFAFAKGLVNAVLRRF 154

Query: 132 SREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
            RE+  L                W+ + ++  +       ++        + L V     
Sbjct: 155 QRERDALVAALQDDPVARWNYRPWWIDAVKRAWPDAWQAILAAGERQGP-LTLRVNARRA 213

Query: 188 TWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +    L+                        +  +PGFA+GV  VQDA A +  +  G  
Sbjct: 214 SVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGAR 273

Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
           + + VLD CAAPGGKT  ++  +GA+V AL+    R  ++  NL RL L A D+   D  
Sbjct: 274 DGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSL-AADVRVGDAG 332

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
               +   + FD +L D PCS++G +RRHPD+ W R   DI      QR++L      VK
Sbjct: 333 APDAWYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVK 392

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +++  CS+  ++ E   +    +    V L          +    A + +      
Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVPAGAAGALD------ 446

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
                     ++  DGFF    ++
Sbjct: 447 ---------QNTDHDGFFYARFQK 461


>gi|83951869|ref|ZP_00960601.1| NOL1/NOP2/sun family protein [Roseovarius nubinhibens ISM]
 gi|83836875|gb|EAP76172.1| NOL1/NOP2/sun family protein [Roseovarius nubinhibens ISM]
          Length = 384

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 132/443 (29%), Gaps = 62/443 (13%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   ++ +L  ++   ++    L      + F     +D+  VR  V   LR 
Sbjct: 1   MTP--AARYQTAAEILDEIL-GGVAAEKALTNWARRARFAG--SKDRAAVRDHVFDVLRQ 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                           P  +  +  LLR                +D              
Sbjct: 56  R-------QSCAARGGPDGRGLILGLLR-------------GDGIDPDTVFTGDGYGPAV 95

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            ++             +           + E F         +  V+   +   S     
Sbjct: 96  LSEAEREAGDAGDVLDLPAWIVAPMREALGEDFDRTEHALRERAPVMLRVNLAKSDPAAA 155

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                D    A  +         + + E    I     + +G+  +QD S+   V     
Sbjct: 156 RAALADEGVIAEPVAGSAT---ALVVTEGARRIRLGRAYLDGLVELQDGSSQAAVAALAG 212

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
                VLD CA  GGK+  L     A++ A D    R+  L     R       I  +D 
Sbjct: 213 RAPARVLDYCAGGGGKSLALAALCSAEIYAHDADPARMSDLPERAARAGAD---ITRLDR 269

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
            +      +D V+ D PCS +GT RR P++ W     D+      Q ++L +  + V PG
Sbjct: 270 EEIAGHAPYDLVICDVPCSGSGTWRRTPEMKWRFSEADLAALVQTQAEILDEAAAHVAPG 329

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G + +  CS+  +++E   +      P                         G  R    
Sbjct: 330 GYLAYMTCSILAEENEAQAEGFGARHPGFALR--------------------GTRR---- 365

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
                  VS+  DGFF     R+
Sbjct: 366 -----WPVSASGDGFFLAQFERV 383


>gi|134297372|ref|YP_001121107.1| sun protein [Burkholderia vietnamiensis G4]
 gi|134140529|gb|ABO56272.1| sun protein [Burkholderia vietnamiensis G4]
          Length = 494

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 163/437 (37%), Gaps = 34/437 (7%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRK 78
           R+  +L   L   +       +    +   + +   T+R L   D ++  ++        
Sbjct: 75  RRGTALPAALATVFAQMP-ADVRAFARGATQDVAYRTMRRLGSADWLIGRLVSKAPPAHV 133

Query: 79  KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
              L   L + +          + VVD AV      +E      LVN++LRR  RE+  L
Sbjct: 134 HAVLAGALALLLDPADAAAYPAFTVVDQAVTVIGARREYAFAKGLVNAVLRRFERERDTL 193

Query: 139 ----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194
                           W+ + ++  +       ++        + L V     +    L+
Sbjct: 194 VAALQDDPVARWNYRPWWIDAVKRAWPDAWQAVLAAGDRQGP-LTLRVNARRASVDAYLD 252

Query: 195 -------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
                                   +  +PGF +GV  VQDA A +  +  G  + + VLD
Sbjct: 253 TLRANGIDATAIGRHAVRLASALPVDRIPGFGDGVVSVQDAGAQLAAEWLGARDGMRVLD 312

Query: 248 LCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCP 303
            CAAPGGKT  ++  +   V AL+    R E++  NL RL L A D+   D      +  
Sbjct: 313 ACAAPGGKTGHILELADVDVVALESDAARAERIGENLARLSLSA-DVRVGDAGAPQAWYD 371

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FD +L D PCS++G +RRHPD+ W R   DI      QR++L      VKPGG +++
Sbjct: 372 GRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILSALWPLVKPGGELLY 431

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
             CS+   + E   +    +    V L                    G +R         
Sbjct: 432 VTCSIFPDEGELQARWFEAACEDAVRLDAPGQLLP------------GGVR---GATAGA 476

Query: 424 DGVSSGMDGFFAVALRR 440
              ++  DGFF    ++
Sbjct: 477 LDPTTDHDGFFYARFQK 493


>gi|301119835|ref|XP_002907645.1| ribosomal RNA methyltransferase nop2-like protein [Phytophthora
           infestans T30-4]
 gi|262106157|gb|EEY64209.1| ribosomal RNA methyltransferase nop2-like protein [Phytophthora
           infestans T30-4]
          Length = 645

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 123/319 (38%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           AG         +     +     +   +A   P  + +            A  L      
Sbjct: 204 AGYFGYNRELIDMFLKMFSPAECVEFVEANEQPRPLVIRTNTLKARRRDLAQALIQRGVN 263

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+++ + P  I + P +  G + +Q AS+   V       N  VLD+  A
Sbjct: 264 LDPLAKWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSICAVMALAPQMNERVLDMACA 323

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGKT  +   + +   V A D+ K+RL+    NL RL +    +   D          F
Sbjct: 324 PGGKTTYIAQLMKNTGTVIANDLKKQRLKATVANLHRLGVKNTSVSCYDGRKVPSLFKGF 383

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+  G I R P +   +   D+ + A  Q++LLL  I  V    K GG +++
Sbjct: 384 DRVLLDAPCTGMGVIARDPSIKTQKGEKDVQRLAHLQKELLLAAIDAVDAKSKTGGYILY 443

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR     V+LV     + K        +     R  P   +  
Sbjct: 444 STCSVMVDENESVVDYALRKR--CVKLVDTGLDHGKP-----GFTRYQQQRFHPSVQLTR 496

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +       MDGF+    ++
Sbjct: 497 RFYPHVHNMDGFYVAKFKK 515


>gi|289620653|emb|CBI52784.1| unnamed protein product [Sordaria macrospora]
          Length = 744

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 151/372 (40%), Gaps = 42/372 (11%)

Query: 92  QILYLDVADYAVV-DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
           Q+L   + D   V D     A+  K                +    +L++ I       E
Sbjct: 225 QMLRTRITDAIRVLDDFSSLAEEGK--------------SRAEYTSQLIKDICAYYGYNE 270

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI---- 203
           +  E+L N +      A  +A  S   + +    ++      A  L    +    +    
Sbjct: 271 FLAEKLFNLFPPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWS 330

Query: 204 ----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
               ++ +    + + P +  G + +Q AS+ +PV          VLD+ +APGGKT  +
Sbjct: 331 KVGLQVFDSNVPLGATPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHM 390

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAP 315
              + +   + A D SK+R + L  N+ RL      +   DA ++      FD VL+DAP
Sbjct: 391 AALMKNTGVIFANDPSKQRAKGLIGNIHRLGARNVIVCNYDAREFPRVMGGFDRVLLDAP 450

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V   RD  D ++    Q++LLL  I  V    K GG VV+S CS+  +
Sbjct: 451 CSGTGVIAKDPSVKTNRDEKDFLQLPHLQKQLLLAAIDSVDHASKTGGYVVYSTCSVAVE 510

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSG 429
           ++E+VV   L   P  V+LV    A+ K        +        P   +  +       
Sbjct: 511 ENEQVVAYALSRRPN-VKLVETGLAFGK-----EGFTSFMGKSFHPSLKLTRRYYPHLYN 564

Query: 430 MDGFFAVALRRL 441
           +DGFF    ++L
Sbjct: 565 VDGFFVAKFQKL 576


>gi|302915517|ref|XP_003051569.1| hypothetical protein NECHADRAFT_38896 [Nectria haematococca mpVI
           77-13-4]
 gi|256732508|gb|EEU45856.1| hypothetical protein NECHADRAFT_38896 [Nectria haematococca mpVI
           77-13-4]
          Length = 673

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 27/320 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                  E+  E+L N +      A  +A  S   + +    ++      A  L    + 
Sbjct: 274 CAYYGYSEYLAEKLFNLFTPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVT 333

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +        ++ E    + + P +  G + +Q AS+ +P        N  VLD+ AA
Sbjct: 334 LEPVGKWSKVGLQVFESNVPLGATPEYLAGHYILQAASSFLPCMALEPQENERVLDMAAA 393

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLF 307
           PGGKT  +   + +   + A D +K R + L  N+ RL      +   DA ++  P   F
Sbjct: 394 PGGKTTYMAAMMKNTGVIVANDPNKARAKGLIGNIHRLGTRNVVVSNYDAREFPKPMGGF 453

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   +   D ++    Q++L+L  I  V    K GG +V+
Sbjct: 454 DRVLLDAPCSGTGVIAKDPSVKTNKTERDFMQLPHIQKQLVLAAIDSVNHASKTGGYIVY 513

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
           S CS+  +++E+VVQ  L   P  V LV     + K        +     +  P      
Sbjct: 514 STCSVTVEENEQVVQYALSRRPN-VRLVESGLPFGK-----EGFTSYMGKKFDPSMRHTR 567

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +    +  +DGFF     ++
Sbjct: 568 RYYPHTYNVDGFFVAKFHKI 587


>gi|85119485|ref|XP_965642.1| hypothetical protein NCU02511 [Neurospora crassa OR74A]
 gi|28927454|gb|EAA36406.1| hypothetical protein NCU02511 [Neurospora crassa OR74A]
          Length = 746

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 27/320 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                  E+  E+L N +      A  +A  S   + +    ++      A  L    + 
Sbjct: 271 CAYYGYNEYLAEKLFNLFPPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVT 330

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +        ++ +    + + P +  G + +Q AS+ +PV          VLD+ +A
Sbjct: 331 LEPVGKWSKVGLQVFDSNVPLGATPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASA 390

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   + A D SK+R + L  N+ RL      +   DA ++      F
Sbjct: 391 PGGKTTHMAALMKNTGVIFANDPSKQRAKGLIGNIHRLGARNVIVCNYDAREFPRVMGGF 450

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   RD  D ++    Q++LLL  I  V    K GG VV+
Sbjct: 451 DRVLLDAPCSGTGVIAKDPSVKTNRDEKDFLQLPHLQKQLLLAAIDSVDHASKTGGYVVY 510

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
           S CS+  +++E+VV   L   P  V+LV    A+ K        +        P   +  
Sbjct: 511 STCSVAVEENEQVVAYALSRRPN-VKLVETGLAFGK-----EGFTSFMGKSFHPSLKLTR 564

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +       +DGFF    ++L
Sbjct: 565 RYYPHLYNVDGFFVAKFQKL 584


>gi|315049127|ref|XP_003173938.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS
           118893]
 gi|311341905|gb|EFR01108.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS
           118893]
          Length = 696

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 141/319 (44%), Gaps = 23/319 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L + +      +  +A  SP  I +    ++ +  + A  L    + 
Sbjct: 276 CVYYGYTPYLAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVV 335

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +        ++ E P  + + P +  G + +Q AS+ +PV       +  +LD+ AA
Sbjct: 336 LEPVGKWSKVGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAA 395

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
           PGGKT      + +   + A D SK R + L  N+ RL      +  MDA    PK +  
Sbjct: 396 PGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGG 455

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPCS TG I + P V  ++   D +     Q++LLL  I       K GG +V
Sbjct: 456 FDRVLLDAPCSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIV 515

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ  LR  P  V++V      + +      ++ +   +  P +  +
Sbjct: 516 YSTCSVTVEENEGVVQYALRKRPN-VKIVDTGLGSFGTPGFKSYMNKKFDDK-MP-LTRR 572

Query: 423 IDGVSSGMDGFFAVALRRL 441
                  +DGFF   L+++
Sbjct: 573 YYPHRENVDGFFVCKLKKI 591


>gi|240103453|ref|YP_002959762.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
 gi|239911007|gb|ACS33898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
          Length = 309

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 135/304 (44%), Gaps = 17/304 (5%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
                 W +  L      E+ L       +       +   +     +   +     G  
Sbjct: 16  ERYYELWGERALSIAEAMEKPLPRCFRVNTLRIEIPKLTKLLNKKGFQFRRIPWAREGFC 75

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           L   P SI S P +  G+ ++Q+AS+  P           V D+ AAPGGKT+ L   + 
Sbjct: 76  LTREPFSITSTPEYLSGLLYIQEASSMYPPVALEPKPGEVVADMAAAPGGKTSYLAQLME 135

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320
           +   + A DV + RL++ R NL RL +    +    +         FD +L+DAPC+ +G
Sbjct: 136 NEGIIYAFDVGEERLKETRLNLSRLGVTNTVLFHRSSLYIDELGVEFDKILLDAPCTGSG 195

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           TI ++P+    R  +D+      Q K+L +G+S ++ GGI+V+S CSL+ +++E V+Q V
Sbjct: 196 TIHKNPERKANRTIEDVKFCQNLQMKMLEKGLSVLRKGGILVYSTCSLEPEENEFVIQWV 255

Query: 381 LRSSPIPVELVPLNSAYWK-SIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           L +    VEL+PL       +    + LS E     R  PD          G  GFF   
Sbjct: 256 LDNF--DVELLPLRYGEPALTRPFGIELSEEIKKARRFYPD--------RHGTSGFFVAK 305

Query: 438 LRRL 441
           LR+L
Sbjct: 306 LRKL 309


>gi|242770399|ref|XP_002341972.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218725168|gb|EED24585.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 770

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 151/369 (40%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   V    + A   +  +  A  +  +L  +                   +
Sbjct: 251 QLLRTRITDTLRV--LGDLATLGQPGQSRADYMQLLLDDICTY-----------YGYTPY 297

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
             E+L + +      A  +A   P  + +    ++ +  T A  L    +    +     
Sbjct: 298 LAEKLMSLFTPMEAFAFFEANEIPRPVVIRTNTLRTNRRTLAQALINRGVVLQPVGKWSK 357

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                      + + P +  G + +Q AS+ +PV       N  VLD+ +APGGKT  + 
Sbjct: 358 VGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYIS 417

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
             + +   V A D SK R + L  N+ RL      +   +A +  PK    FD VL+DAP
Sbjct: 418 ALMRNTGIVVANDASKARTKGLIGNIHRLGCKNTIVCNYNAQEAFPKILGGFDRVLLDAP 477

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           C+ TG I + P V   +   D +     QR+LLL  I       K GG +V+S CS+  +
Sbjct: 478 CTGTGVISKDPSVKTNKTERDFLAIPHLQRQLLLAAIDSTDHHSKTGGYIVYSTCSVTVE 537

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E+VVQ VLR  P  V++V      + S      +  +   ++T  +  +       +D
Sbjct: 538 ENEQVVQYVLRKRPN-VKIVDTGLGSFGSEGFTSYMGKKFDEKMT--LTRRYFPHRENVD 594

Query: 432 GFFAVALRR 440
           GFF   L++
Sbjct: 595 GFFVCKLKK 603


>gi|212223580|ref|YP_002306816.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
 gi|212008537|gb|ACJ15919.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
          Length = 371

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
                 W +  L      E+ L       +      T+   +     +   V     G  
Sbjct: 78  ERYYQLWGERALAIAEAMEKPLPRCFRVNTLRVEIPTLTKLLNKKGFQFRRVPWAREGFC 137

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           L   P SI S P +  G+ ++Q+AS+  P           V D+ AAPGGKT+ L   + 
Sbjct: 138 LTREPFSITSTPEYLSGLLYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMK 197

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320
           +   + A DV + RL++ R NL RL +     I +           FD +L+DAPC+ +G
Sbjct: 198 NEGIIYAFDVGEERLKETRLNLSRLGITNTILIHKSSLHMGELGIEFDKILLDAPCTGSG 257

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           TI ++P+    R  +DI      Q +++   +  +KPGGI+V+S CSL+ +++E V+Q  
Sbjct: 258 TIHKNPERKSNRTMEDIKFCQGLQMQMIKVALENLKPGGILVYSTCSLEPEENEFVIQWT 317

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L S    VEL+PL       I     +   G I+       +      G  GFF   LR+
Sbjct: 318 LDSF--DVELLPLRYGEPALI-KPFGVKLSGEIK----KARRFYPDRHGTSGFFVAKLRK 370

Query: 441 L 441
           L
Sbjct: 371 L 371


>gi|327400250|ref|YP_004341089.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6]
 gi|327315758|gb|AEA46374.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6]
          Length = 319

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 21/311 (6%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT-VKFDIETWAHKLNAVMLPT 200
           A      E+   R    +G E V  I         YI +  +K + +    +L       
Sbjct: 16  AECYGYDEFIIRRWFGIFGDEAVELIEAMEKGVPKYIRVNTLKIEEKELIRRLEKRKFVV 75

Query: 201 GGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
               +    +      SI + P +  G ++V D ++ IP       +   V+D  A+PGG
Sbjct: 76  EQTEVPFCYKVVGEPYSIGATPEYLMGYYYVMDKASCIPPLALSPSSRDVVVDFAASPGG 135

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310
           KT  L   + +   + A++ +  R++ L  N+ R+ +    +++M+A  +       D +
Sbjct: 136 KTTFLAQLMGNRGVLLAIEANPDRIQPLIDNIHRMGVLNAAVVQMNAAKFHKIGIKPDKI 195

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS  G I + P    +R  +DI+  +  QR L+   I  +K GG +V+S CSL  
Sbjct: 196 LLDAPCSGEGIIHKDPSRKTSRGEEDILFCSGLQRDLIDSAIRSLKSGGALVYSTCSLTP 255

Query: 371 QDSEEVVQKVLRSSPIPVE-LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           +++E V+Q  L + P+ +E +   + A  K  D+  +   +   R  P            
Sbjct: 256 EENEMVIQWALDNHPVRLEKIEWGDPALTKVGDIRFSNEMKKARRFYPH--------RHE 307

Query: 430 MDGFFAVALRR 440
             GFF   L +
Sbjct: 308 CSGFFVAKLVK 318


>gi|50546513|ref|XP_500726.1| YALI0B10560p [Yarrowia lipolytica]
 gi|49646592|emb|CAG82971.1| YALI0B10560p [Yarrowia lipolytica]
          Length = 609

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L N +     +   +A   P  + +            A  L    + 
Sbjct: 221 CSYYGYNEYLAEKLFNLFTPSEAIEFFEANEVPRPVTIRANTLKTRRRDLAQSLVNRGVN 280

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV          VLD+ A+
Sbjct: 281 LQPIGKWTKVGLQIFDSAVPIGATPEYLCGHYILQAASSFLPVMAMDPQEGERVLDMAAS 340

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A DVSK R++ L  N+ RL      +   DA ++      F
Sbjct: 341 PGGKTTYISALMKNTGMVFANDVSKPRIKSLIANIHRLGCKNTVVCNYDAREFPKVIGGF 400

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D +L+DAPCS TG I +   V   R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 401 DRILLDAPCSGTGVISKDQAVKTNRSEKDFIQLPHLQKQLLLSAIDSVDANSATGGVIVY 460

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E VV   LR  P  V LV       K        +       +P   +  
Sbjct: 461 STCSVMVEENEAVVDYALRKRPN-VRLVETGLEIGK-----EGFTSFRGKTFSPKLKLTR 514

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGF+    +++ 
Sbjct: 515 RYYPHTYNVDGFYVAKFQKIA 535


>gi|212541847|ref|XP_002151078.1| nucleolar RNA methyltransferase (Nop2), putative [Penicillium
           marneffei ATCC 18224]
 gi|210065985|gb|EEA20078.1| nucleolar RNA methyltransferase (Nop2), putative [Penicillium
           marneffei ATCC 18224]
          Length = 764

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 150/369 (40%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   V    + A   +  +  A  +  +L  +                   +
Sbjct: 249 QLLRTRITDTLRV--LGDLATLGQPGKSRADYMQLLLDDICTY-----------YGYTPY 295

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
             E+L + +      A  +A   P  + +    ++ +  T A  L    +    +     
Sbjct: 296 LAEKLMSLFTPMEAFAFFEANEIPRPVVIRTNTLRTNRRTLAQALINRGVVLQPVGKWSK 355

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                      + + P +  G + +Q AS+ +PV       N  VLD+ +APGGKT  + 
Sbjct: 356 VGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYIS 415

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
             + +   V A D SK R + L  N+ RL      +   +  +  PK    FD VL+DAP
Sbjct: 416 ALMRNTGIVVANDASKVRTKGLIGNIHRLGCKNTIVCNYNGQEAFPKILGGFDRVLLDAP 475

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           C+ TG I + P V   +   D +     QR+LLL  I       K GG +V+S CS+  +
Sbjct: 476 CTGTGVISKDPSVKTNKTERDFLAIPHMQRQLLLAAIDSTDHHSKTGGYIVYSTCSVTVE 535

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E+VVQ VLR  P  V++V      + S      +  +   ++T  +  +       +D
Sbjct: 536 ENEQVVQYVLRKRPN-VKIVDTGLGSFGSEGFTSYMGKKFDEKMT--LTRRYFPHRENVD 592

Query: 432 GFFAVALRR 440
           GFF   L++
Sbjct: 593 GFFVCKLKK 601


>gi|124027641|ref|YP_001012961.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
           butylicus DSM 5456]
 gi|123978335|gb|ABM80616.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
           butylicus DSM 5456]
          Length = 424

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 160/444 (36%), Gaps = 35/444 (7%)

Query: 9   LVSSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
            V++ +L+  +R+R SL    +     +     +    + +VR +     R    +D VL
Sbjct: 6   EVAARILAETVRRRASLRDVAVGFFSRNPELDYM----KPIVRVLTLGVARHYLLLDRVL 61

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             +        +  +    RV V + L   +          + A++   +      +   
Sbjct: 62  VSLGYGPPSHSQRWMLA--RVLVYEALSGKLKPTRA----RKLAEKAGLDPDKLLELRGA 115

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKFDI 186
             R   + +  L R++ +   P W  E L      +    +      P+ +I +    D 
Sbjct: 116 DPREFVKGLSGLDRLSVLYSFPRWMLEELLEARIPDLPKLLEVLNSDPVRWIRIRPGVDR 175

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI-------VSLPGFAEGVWWVQDASASIPVQLFGT 239
           +  A +L    +     +       I            + EG++ +QD ++++   +   
Sbjct: 176 KWLAERLQEQGVVIEPDKDLPDVARIVKGASEATRTREYQEGLYTIQDKASTLVGWVASP 235

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
                  D  A    K + +   GA+ V A DV  +RL++ +  L RL L     + +  
Sbjct: 236 RGR-VAADPTAGAAIKASHMAWLGARYVVAGDVKPQRLQEAKRTLSRLGLGHIVDLAVGD 294

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 +  D V+VD PC+  G ++  P+V       D+      Q ++L      +  G
Sbjct: 295 ARMPYWRKLDVVIVDPPCTDIGRLQYEPEVKLWLTRGDLHYYRRLQLRILASVAKSLPRG 354

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
             +V+S C+L + ++  V++++L + P    + P      +   +  A       R+ P 
Sbjct: 355 ATIVYSVCTLTRSETVWVLRRLLETHPDVEIVEPEPVLGERPQGLPKAQ------RMLPH 408

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           +            GFF   L ++ 
Sbjct: 409 L--------HKTQGFFIAKLAKIA 424


>gi|327301379|ref|XP_003235382.1| nucleolar protein NOP2 [Trichophyton rubrum CBS 118892]
 gi|326462734|gb|EGD88187.1| nucleolar protein NOP2 [Trichophyton rubrum CBS 118892]
          Length = 690

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    +     +  +  A   + +L  +                   +
Sbjct: 238 QLLRTRITDTIRI--LGDLTTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 284

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      +  +A  SP  I +    ++ +  + A  L    +    +     
Sbjct: 285 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 344

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  +LD+ AAPGGKT    
Sbjct: 345 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 404

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   + A D SK R + L  N+ RL      +  MDA    PK +  FD VL+DAP
Sbjct: 405 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGGFDRVLLDAP 464

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 465 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 524

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + +      ++ +   +  P +  +       +D
Sbjct: 525 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSFMNKKFDDK-MP-LTRRYYPHRENVD 581

Query: 432 GFFAVALRR 440
           GFF   L++
Sbjct: 582 GFFVCKLKK 590


>gi|325108338|ref|YP_004269406.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324968606|gb|ADY59384.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 495

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 107/475 (22%), Positives = 183/475 (38%), Gaps = 60/475 (12%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGD----SAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +R  +  LL     ++  +   L L   D       +     ++ ++             
Sbjct: 24  SRQWTYRLLEGWRTEQQLIRDQLQLFRQDQITSDTHQGAGWAERAII---------RQRT 74

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           ID VL   +  +    +  L  LLR+  A++L+    A YA +   VE A R   +  + 
Sbjct: 75  IDRVLREAVSRARENVQNELWTLLRMGAAELLFGPRDAQYAAISETVELA-RWVGHSEWT 133

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEW------------------------------ 151
             +N +LR V R   E      G    P                                
Sbjct: 134 GFLNGVLRGVQRMLSEEESDTVGKDCFPVADNIYRKLNKPIFPDPETQTVDYIGLAFSLP 193

Query: 152 --FKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLK 206
               +   + Y  + +  +  + +SP  + L +     D + W  +  A  +  G     
Sbjct: 194 GTLAKAWASRYSHDELWPVVWSTLSPPPLGLRINRVATDPQEWLARCEAAGVEIGTTEFP 253

Query: 207 ELPE-----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-- 259
           E  +      +  +PGF EG   VQD +A   V+L        VLDLCA PG KT Q+  
Sbjct: 254 EAFQLLSKTRLHDIPGFTEGEVVVQDLTAMHAVRLLNPYPKDDVLDLCAGPGTKTTQMAE 313

Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCS 317
            ++    +TA DV++ RL+++  N +RL       + ++          FDAVL D PCS
Sbjct: 314 LMLDQGSITATDVTQARLDQISENAERLSFSCIHPMWIERTKPEIDNGPFDAVLADVPCS 373

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           +TG + + P+  W    +DIV+    QR+LL    S V+  G +V+S CS++  ++E+ +
Sbjct: 374 NTGVLGKRPEARWRYSPEDIVELNKLQRRLLDVAASQVEEDGRIVYSTCSIEPAENEQFI 433

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
            + LR+ P   E V + +            +   +        E  +   +  DG
Sbjct: 434 VEWLRAHP-EFECVEMKTVLPSPEHDGGFCARLEYRETDEADGENAEADETAGDG 487


>gi|302501985|ref|XP_003012984.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371]
 gi|291176545|gb|EFE32344.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371]
          Length = 689

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + +   +  +  A   + +L  +                   +
Sbjct: 237 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 283

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      +  +A  SP  I +    ++ +  + A  L    +    +     
Sbjct: 284 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 343

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  +LD+ AAPGGKT    
Sbjct: 344 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 403

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   + A D SK R + L  N+ RL      +  MDA    PK +  FD VL+DAP
Sbjct: 404 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGGFDRVLLDAP 463

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 464 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 523

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + +      ++ +   +  P +  +       +D
Sbjct: 524 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMNKKFDEK-MP-LTRRYYPHRENVD 580

Query: 432 GFFAVALRR 440
           GFF   L++
Sbjct: 581 GFFVCKLKK 589


>gi|24373769|ref|NP_717812.1| sun protein, putative [Shewanella oneidensis MR-1]
 gi|24348152|gb|AAN55256.1|AE015663_6 sun protein, putative [Shewanella oneidensis MR-1]
          Length = 404

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 139/447 (31%), Gaps = 70/447 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  ++L+ V+ +   L       +       L   +Q  +  +    LR L        
Sbjct: 12  ELVINILAMVLSEGKPLDRAYSQHFSGLK---LVPAEQARITTVTGDILRRLNLYCF--- 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +        +    +LL V            + +    +E  K           + + +
Sbjct: 66  -LADIKPEEMERLGSKLLNV------------WHLFHE-LELPKMQYSLPVDPDDLVARI 111

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
            +     +            PEW         G         A   P    L V      
Sbjct: 112 EQAKTNPVLWDGC-------PEWLDTMGREQLGASW-EKERAALNRPPKRFLRVNGLKVS 163

Query: 186 IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            +    KL    + T  +   +         ++     F EG++  QDA +         
Sbjct: 164 RDELVQKLATEFVSTQVVDSVDSALEVTSDSALFRTNSFKEGLFEQQDAGSQRVAAALDA 223

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
              + V+D CA  GGKT      +    ++ A+DV + +L+ L+    R   +  +    
Sbjct: 224 KPGMRVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRLI 283

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                    K   D VL+D PCS  G ++R+PD  W    D +      Q+ +L      
Sbjct: 284 VGSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDAKWRDTADRLPVLMELQKHILSSYSRM 343

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GGIVV++ CS+   ++   V   L  +P    L                        
Sbjct: 344 VKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLED---------------------- 381

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 E I    +G DGF+   L R+
Sbjct: 382 ------ETISPADTGFDGFYLAKLERI 402


>gi|302385720|ref|YP_003821542.1| RNA methylase, NOL1/NOP2/sun family [Clostridium saccharolyticum
           WM1]
 gi|302196348|gb|ADL03919.1| RNA methylase, NOL1/NOP2/sun family [Clostridium saccharolyticum
           WM1]
          Length = 466

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 118/308 (38%), Gaps = 22/308 (7%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLY-IDLT-VKFDIETWAHKLN---AVMLPTG 201
            +P+ F+E+++    +E    +       +  + +  +K   E +          +    
Sbjct: 3   QLPDGFREKMKGLLEEEYDSFMESYHKERVQGLRINPLKISRENFMEICPFQLKKIPWAE 62

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
                   E     P    G++++Q+ SA   V+L        +LDLCAAPGGKT  +  
Sbjct: 63  EGYYYPADERPGKHPYHEAGLYYIQEPSAMAVVELLDPRPGERILDLCAAPGGKTTHIAG 122

Query: 262 S---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPC 316
                  + + ++   R   L  N++RL +    +   D+     +    FD ++VDAPC
Sbjct: 123 RLKGNGFLLSNEIHPARARILSQNVERLGIGNCVVSNEDSQSLSRRFPSFFDRIVVDAPC 182

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G  R+            +   A  Q ++L      +KPGG +V+S C+   +++E+V
Sbjct: 183 SGEGMFRKDETARQEWTPGHVTVCAARQEEILSNAAVMLKPGGTMVYSTCTFSPEENEQV 242

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDG 432
           ++  L S P                    + +  G +    RI PD  E          G
Sbjct: 243 IEAFLFSHPDFSIKDEGKRPGLSPGRPEWSRTGLGDLKKTFRIWPDRSEGE--------G 294

Query: 433 FFAVALRR 440
            F   L++
Sbjct: 295 HFLAVLKK 302


>gi|303273764|ref|XP_003056234.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462318|gb|EEH59610.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 353

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 119/319 (37%), Gaps = 30/319 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP 199
           A       +        +     + + +A  +   + L            A  L    + 
Sbjct: 43  ATYYGYNTFLTRYFIETFSVAETMELLEANETQRPVTLRTNTLKCRRRELAAALINRGVN 102

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +P       +   VLD+ AA
Sbjct: 103 LDPIGKWSKVGLLVYDSRVPIGATPEYMAGHYMLQSASSFLPCMALAPQDGERVLDMAAA 162

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307
           PGGKT  +   + +  ++ A +  K+RL  L  NL R+      +   D           
Sbjct: 163 PGGKTTYVAALMRNTGQIFANEFQKKRLSSLVANLQRMGCTNAVVCNYDGRQLPKVLGRV 222

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  ++   DI K A  Q++LL+  +       K GG VV+
Sbjct: 223 DRVLLDAPCSGTGVIAKDSSVKVSKSEADIAKCAHLQKELLVAAVDCCDATSKTGGYVVY 282

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           S CS+  +++E VV  +L+   + +    L     A+          S     R  P + 
Sbjct: 283 STCSVTVEENEAVVDYLLKKRDVKLVSTGLEFGREAFASYRGKNFHPSVTKARRFYPHV- 341

Query: 421 EKIDGVSSGMDGFFAVALR 439
                    MDGFF   ++
Sbjct: 342 -------HNMDGFFVAKIK 353


>gi|89054474|ref|YP_509925.1| Fmu (Sun) [Jannaschia sp. CCS1]
 gi|88864023|gb|ABD54900.1| Fmu (Sun) [Jannaschia sp. CCS1]
          Length = 387

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 126/389 (32%), Gaps = 31/389 (7%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M+    AR   +  +L       +++   L      + +     +D+  VR  V   LR 
Sbjct: 1   MQP--AARYAAAIEVLDAWCD-GLAVEQALTRWARGARYAG--SKDRAAVRDHVYDVLRQ 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
               +A L       L      +  LLR+           D   V   V  A      R 
Sbjct: 56  KGSCEA-LGNGTGRGL------ILGLLRI--------QGRDAEAVFSGVGHAPDPLSERE 100

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            +    S+        I         S +P+     L +   +     +           
Sbjct: 101 KSSPQTSLD---PPMNIPDWTLPHLRSRVPDALPVLLSSLTHRA---PLWLRVNLSRTTR 154

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
             V   +     +  A       + + + P  +     +  G+   QD S    +Q    
Sbjct: 155 AAVADALADDGIETRAHEAVPTALEVTDGPRKLRQSAAYLSGLVEPQDLSVQWAMQRVDW 214

Query: 240 LNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
             +  +LD CA  GGK  A    +GA + A D   +R+  L     R       +   D 
Sbjct: 215 PADGRILDYCAGGGGKALAIADRTGADLFAHDALPQRMADLGPRAGRAGAKITTLESDDF 274

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
               P   FD VL D PCS +GT RR P+  W   +  +      Q  +L      V PG
Sbjct: 275 GQEDP---FDLVLTDVPCSGSGTWRRDPEAKWRLTSQGLEDLVKTQSAILDAAADLVLPG 331

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           G +V+  CSL + ++E  +   L   P  
Sbjct: 332 GRLVYMTCSLFEVENEAQITAFLARHPDW 360


>gi|240277116|gb|EER40626.1| nucleolar protein NOP2 [Ajellomyces capsulatus H143]
 gi|325096756|gb|EGC50066.1| nucleolar protein NOP2 [Ajellomyces capsulatus H88]
          Length = 670

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 151/369 (40%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   +A+   +    +     K  +  A   N +L  +                   +
Sbjct: 221 QLLRTRIAETTRI--LGDLPSLGKPTKSRADYTNLLLSDICTY-----------YGYTPF 267

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
             E+L   +      A  +A  SP  + +    ++ +  + A  L    +    +     
Sbjct: 268 LAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 327

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                      + + P +  G + +Q AS+ +PV       N  VLD+ AAPGGKT  + 
Sbjct: 328 VGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYIS 387

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
             + +   V A D SK R + L  N+ RL      I  +DA    PK    FD VL+DAP
Sbjct: 388 ALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILGGFDRVLLDAP 447

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS----FVKPGGIVVFSNCSLDKQ 371
           CS TG I + P++  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 448 CSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIVYSTCSVTVE 507

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR+ P  V++V      + +      +  +   ++   +  +       +D
Sbjct: 508 ENEAVVQYALRNRPN-VKIVDTGLGNFGTPGFKSYMGKKFDDKM--SLSRRYFPHRENVD 564

Query: 432 GFFAVALRR 440
           GF+   L++
Sbjct: 565 GFYVCKLKK 573


>gi|170739290|ref|YP_001767945.1| Fmu (Sun) domain-containing protein [Methylobacterium sp. 4-46]
 gi|168193564|gb|ACA15511.1| Fmu (Sun) domain protein [Methylobacterium sp. 4-46]
          Length = 437

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 100/461 (21%), Positives = 158/461 (34%), Gaps = 61/461 (13%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L+ +  +R      L        F      D+  +  +V   LR 
Sbjct: 1   MTPS--ARLSAAIEVLADIAARRRPAADALKDWGLAHRFAG--SGDRAAIAGLVYDALRR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                 ++D             L   LR+   +A                   A      
Sbjct: 57  RASAAWIMDDDAPR------AVLIGSLRLQRGLA---------------GATIAGLCSGE 95

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           R     +    R            +     +PEW    L    G + +L    A      
Sbjct: 96  RFAPAPLTEAERARLDTATLADAPLHVAGDVPEWVLPSLVAALGDD-LLPELKALARRAP 154

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSL---------PGFAEGVWWV 225
           +D+ V     D +  A  L  +           L   +            P F EG++ +
Sbjct: 155 LDIRVNTLKADRDRVAAALAHLNPAPTPHAPDGLRIPVPDDGRGPALHVEPEFLEGLFEI 214

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCN 282
           QD  + +  +L G     +V+DLCA  GGKT   A LI +  ++ A D   RRL  +   
Sbjct: 215 QDEGSQLAARLTGARPGETVIDLCAGGGGKTLALAALIANRGRLVATDGDPRRLAPIHER 274

Query: 283 LDRLHLYAEDIIE-----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           L R    AE                     D VLVDAPC+ +GT RR+PD  W      +
Sbjct: 275 LRRAGAVAEVRTPRGGRGAPDALADLAGAADLVLVDAPCTGSGTWRRNPDAKWRLRPGSL 334

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q  +L +    ++PGG +V+  CSL  ++++  V  +L        L  +  A 
Sbjct: 335 AARRAEQEAVLDRAAGLIRPGGRIVYVTCSLLPEENDGAVAGLLARRS---SLRAVPLAL 391

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
              ++ A+  +  G I++TP          +G DGF+   L
Sbjct: 392 APDLEPALRRTAHG-IQMTP--------ARTGTDGFYVALL 423


>gi|225011697|ref|ZP_03702135.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A]
 gi|225004200|gb|EEG42172.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A]
          Length = 403

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 146/451 (32%), Gaps = 68/451 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N  L     L  +   +I L   L      +       RD+ L+  ++   +R+ 
Sbjct: 1   MKLHRNIALGVVEGLQNIFTNKIPLRVELQRLLKLNRKWG--SRDRRLLGEVLLDCIRWK 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
               A L      +       L   L +   ++                   + +E    
Sbjct: 59  TTY-AFLGNFDDKTKHFNWKLLGVWLLLKEYEL------------------PKWEELIDL 99

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            KL N++     +    +         IP+W  +   + +G+               + L
Sbjct: 100 KKLQNTLPLEPKKTTRVI------RHSIPDWLDKVGMDAFGEVIWEKELSKQNEGGPLVL 153

Query: 181 TVKF---DIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASA 230
            V       E     L         +        + E    +  L  + +G++ +QDA++
Sbjct: 154 RVNTLKTTPEKLQKLLEKKFGILSNLNESYPEALILEKHSKLTHLEPYQKGLFEIQDANS 213

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +          + ++D CA  GGKT  +   + +   + A+D   ++LE+L     R  
Sbjct: 214 QLVSHWVNPKPGMKIIDACAGAGGKTLHMAALMENKGNIIAIDNYPKKLEQLIKRAHRNR 273

Query: 288 LYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           +      +              D VL+DAPCS  G +RR+P   W    + + +    Q 
Sbjct: 274 INIIQTNDASEITVFESNLEKADVVLIDAPCSGLGILRRNPAAKWHMTPERMEELQKLQL 333

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L +    VK GG ++++ CS+   ++   +Q  L +                      
Sbjct: 334 QILKKNAPLVKKGGRLIYATCSIFPSENSLQIQSFLNT---------------------- 371

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
               E   R      E      +G DGFF  
Sbjct: 372 ----ESGKRFNLKKEETFLAYKTGFDGFFIA 398


>gi|291617715|ref|YP_003520457.1| YebU [Pantoea ananatis LMG 20103]
 gi|291152745|gb|ADD77329.1| YebU [Pantoea ananatis LMG 20103]
          Length = 488

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 20/268 (7%)

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                +  +L  V     G  +    E   + S+     G++++Q+AS+ +PV       
Sbjct: 68  TQTAHYGWQLTPVPWCAEGFWINREDESLPLGSVAEHLSGLFYIQEASSMLPVTALFEAQ 127

Query: 242 N--LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
              +SV+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   
Sbjct: 128 PDAMSVMDMAAAPGSKTTQIAACMHNRGVILANEFSASRVKVLHANITRCGVTNSALTHF 187

Query: 297 DAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           DA  + P     FDA+L+DAPCS  G +R+  D L           A  QR L+      
Sbjct: 188 DARVFGPALPEQFDAILLDAPCSGEGVMRKDADALKNWSLTSTQTIAQTQRDLIESAFHA 247

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +KPGG +V+S C+L++ ++++VV  +L   P  VE+ PLN  +        A +PEG++ 
Sbjct: 248 LKPGGTLVYSTCTLNQIENQQVVAWLLARYPDAVEIAPLNGLF---AGAERAATPEGYLH 304

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P + +          GFF   LR+  
Sbjct: 305 VFPHLFDSE--------GFFVACLRKTA 324


>gi|330915499|ref|XP_003297055.1| hypothetical protein PTT_07336 [Pyrenophora teres f. teres 0-1]
 gi|311330482|gb|EFQ94850.1| hypothetical protein PTT_07336 [Pyrenophora teres f. teres 0-1]
          Length = 745

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 146/363 (40%), Gaps = 24/363 (6%)

Query: 92  QILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI-SIIP 149
           Q+L         V+D     A+     R  A+ + S+L+ V             + ++ P
Sbjct: 227 QLLRTRLTDTIRVLDDFKNLAEE---GRSRAEYMASLLKDVCAYYGYSEFLADKLLNLFP 283

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI-RLKEL 208
               +         R + I     +       +   +     +L  V   +    ++ + 
Sbjct: 284 PREAQAFFEANETPRPIVIRT--NTLRTHRRELAQTLINRGVQLEPVGKWSKVGLQIFDT 341

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265
              + + P +  G + +Q AS+ +PV       N  VLD+ AAPGGKT  L   + +   
Sbjct: 342 QVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHLAALMKNTGC 401

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRR 324
           + A D +K R + L  N+ RL      +    A ++      FD VL+DAPCS TG I +
Sbjct: 402 IFANDANKDRAKGLIGNIHRLGARNVIVSHYSALEFPRVMGGFDRVLLDAPCSGTGVIAK 461

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKV 380
              V   +   D +K    Q++LLL  I  V    K GG +V+S CS+  +++E+VVQ  
Sbjct: 462 DASVKTNKTEADFMKLPHLQKQLLLAAIDSVNHSSKTGGYIVYSTCSVTLEENEQVVQYA 521

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVAL 438
           L   P  V+LV     + K        +        P   M  +    +  +DGFF    
Sbjct: 522 LNKRPN-VKLVETGLTFGK-----EGFTKIQGKIFHPSMKMTRRYYPHTYNVDGFFVAKF 575

Query: 439 RRL 441
           +++
Sbjct: 576 KKI 578


>gi|189190438|ref|XP_001931558.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973164|gb|EDU40663.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 739

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 146/363 (40%), Gaps = 24/363 (6%)

Query: 92  QILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI-SIIP 149
           Q+L         V+D     A+     R  A+ + S+L+ V             + ++ P
Sbjct: 227 QLLRTRLTDTIRVLDDFKNLAEE---GRSRAEYMASLLKDVCAYYGYSEFLADKLLNLFP 283

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI-RLKEL 208
               +         R + I     +       +   +     +L  V   +    ++ + 
Sbjct: 284 PREAQAFFEANETPRPIVIRT--NTLRTHRRELAQTLINRGVQLEPVGKWSKVGLQIFDT 341

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265
              + + P +  G + +Q AS+ +PV       N  VLD+ AAPGGKT  L   + +   
Sbjct: 342 QVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHLAALMKNTGC 401

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRR 324
           + A D +K R + L  N+ RL      +    A ++      FD VL+DAPCS TG I +
Sbjct: 402 IFANDANKDRAKGLIGNIHRLGARNVIVSHYSALEFPRVMGGFDRVLLDAPCSGTGVIAK 461

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKV 380
              V   +   D +K    Q++LLL  I  V    K GG +V+S CS+  +++E+VVQ  
Sbjct: 462 DASVKTNKTEADFMKLPHLQKQLLLAAIDSVNHSSKTGGYIVYSTCSVTLEENEQVVQYA 521

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVAL 438
           L   P  V+LV     + K        +        P   M  +    +  +DGFF    
Sbjct: 522 LNKRPN-VKLVETGLTFGK-----EGFTKIQGKIFHPSMKMTRRYYPHTYNVDGFFVAKF 575

Query: 439 RRL 441
           +++
Sbjct: 576 KKI 578


>gi|114562965|ref|YP_750478.1| Fmu (Sun) domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114334258|gb|ABI71640.1| Fmu (Sun) domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 404

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 148/448 (33%), Gaps = 68/448 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  ++L+ V+ +   L       +       L+  +Q  +  +    LR L     ++D
Sbjct: 12  ELVLNVLTMVLTRGKPLDRAYSEHFS---GLTLNPSEQARITQVTGDILRRLNLYCFLVD 68

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                          +LL             +   V   ++  K     +       + L
Sbjct: 69  I----KPEEFDRLGSKLL-------------NGWHVFHGLDLPKMQYSLQLEQAAFEANL 111

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLT-VKFDI 186
            +   + +            PEW  E  +   G +      + A     Y+ +  +K + 
Sbjct: 112 EQAKTDPVLWDGC-------PEWLNELGQVQLGDKWPAERAALAEQPKRYLRVNELKCNR 164

Query: 187 ETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +    +L    +                  ++     F +G +  QDA + +        
Sbjct: 165 DALIERLKKEGVTAIEVSDVASAIEVTSDSALFRTDAFKDGWFEQQDAGSQLVANAVDAK 224

Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
             + V+D CA  GGKT      +    ++ A+D+ + +L+ L+    R   +     II 
Sbjct: 225 PGMRVVDACAGAGGKTLHIAAQMQGKGRLLAMDIEQWKLDNLKTRAKRAGAHNVETRIIA 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                   K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      V
Sbjct: 285 SSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDSKWRDTPERLPVLVELQKHILQSYSRMV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GGI++++ CS+  +++ + +   L  +P    +   N    +                
Sbjct: 345 KVGGILIYATCSIMPEENRDQIDAFLADNPQFTLIEDENILVSER--------------- 389

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        G DGF+   + R+ +
Sbjct: 390 -------------GFDGFYLAKMERIAE 404


>gi|242066150|ref|XP_002454364.1| hypothetical protein SORBIDRAFT_04g029465 [Sorghum bicolor]
 gi|241934195|gb|EES07340.1| hypothetical protein SORBIDRAFT_04g029465 [Sorghum bicolor]
          Length = 640

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 26/318 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                ++  E L   +    ++ + +A        L            A  L        
Sbjct: 172 YYGYNDFLVEALIEMFPAVELVELLEAFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 231

Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I        +         +   +  G +  Q AS+ +PV          ++D+ AAPG
Sbjct: 232 PIGKWSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 291

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A + +++RL  L  N+ R+ +    +   D  +          
Sbjct: 292 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVSNYDGKELPKVLGMNSV 351

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TGTI +   +  ++D +DI   A  Q++LLL  I  V    K GG +V+
Sbjct: 352 DRVLLDAPCTGTGTIWKDLQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDANSKTGGYIVY 411

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS+   ++E V+   L+     V+LVP    + +          E     + +   + 
Sbjct: 412 STCSIMIPENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRYREHRFHTSLEKTRRF 466

Query: 424 DGVSSGMDGFFAVALRRL 441
               + MDGFF   L++L
Sbjct: 467 YPHVNNMDGFFVAKLKKL 484


>gi|71408722|ref|XP_806747.1| nucleolar protein [Trypanosoma cruzi strain CL Brener]
 gi|70870582|gb|EAN84896.1| nucleolar protein, putative [Trypanosoma cruzi]
          Length = 538

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 119/311 (38%), Gaps = 20/311 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGG 202
               E+  + +   +     +   +A   P    + V             L    +    
Sbjct: 162 YEYNEFLTDAVLLLFPPAEAVEFFEAMEKPRPTTIRVNTLKAKRRDLVQALLKRGMHVEP 221

Query: 203 IRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           +                I     +  G + +Q A + +PV          VLD+ AAPGG
Sbjct: 222 LEKWSKVGLQVFESNVPIAGTIEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGG 281

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310
           KT  +   + +   + A DVS+ R + L  NL RL +    +   D   Y      FD V
Sbjct: 282 KTTYIAQLMKNTGVLFANDVSEPRTKALNANLQRLGVTNTVVTNYDGAGYNKIMKNFDRV 341

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPC+ +G I R   +  ++  +D+ +++  QR LLL  I  VK GG VV+S CS   
Sbjct: 342 LLDAPCTGSGIISRDKSIKSSKHYEDVQRASQQQRTLLLSAIDAVKVGGYVVYSTCSFLV 401

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           +++E VV+  +R   + +  + L                E           +       M
Sbjct: 402 EENEAVVEFAVRRRHVEIVEMGLPFGRPGLTKYRHHRFQEKM-----QCSRRFFPHVHNM 456

Query: 431 DGFFAVALRRL 441
           DGFF   L++L
Sbjct: 457 DGFFVCKLKKL 467


>gi|320581196|gb|EFW95417.1| RNA m(5)C methyltransferase, putative [Pichia angusta DL-1]
          Length = 608

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                   +  E+L N +     +   +A      + +            A  L    + 
Sbjct: 223 CEYFGYTPFLAEKLFNLFSPSEAIEFFEANEIHRPVTIRTNTLVTRRRELAQTLVNKGVN 282

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 283 LQPIGPWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERILDMAAA 342

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 343 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCTNTVVCNYDAREFPKVIGGF 402

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +  +V   R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 403 DRVLLDAPCSGTGVIAKDQNVKVNRTEKDFIQIPHLQKQLLLSAIDSVDAHSATGGVIVY 462

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E VV   LR  P  V+LV    A  K        +     +  P   +  
Sbjct: 463 STCSVAVEENEAVVDYALRKRPN-VKLVETGLAIGKP-----GFTSYRGKQFNPKVSLTR 516

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGFF    +++ 
Sbjct: 517 RYYPHAYNVDGFFVAKFQKVA 537


>gi|154277144|ref|XP_001539413.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
 gi|150412998|gb|EDN08381.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
          Length = 1980

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 152/369 (41%), Gaps = 36/369 (9%)

Query: 92   QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
            Q+L   +A+   +    +     K ++  A   N +L  +                   +
Sbjct: 1583 QLLRTRIAETTRI--LGDLPSLGKPSKSRADYTNLLLSDICNY-----------YGYTPF 1629

Query: 152  FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
              E+L   +      A  +A  SP  + +    ++ +  + A  L    +    +     
Sbjct: 1630 LAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 1689

Query: 209  PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                       + + P +  G + +Q AS+ +PV       N  VLD+ AAPGGKT  + 
Sbjct: 1690 VGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYIS 1749

Query: 260  --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
              + +   V A D SK R + L  N+ RL      I  +DA    PK    FD VL+DAP
Sbjct: 1750 ALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILGGFDRVLLDAP 1809

Query: 316  CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS----FVKPGGIVVFSNCSLDKQ 371
            CS TG I + P++  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 1810 CSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIVYSTCSVTVE 1869

Query: 372  DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
            ++E VVQ  LR+ P  V++V      + +      +  +   ++   +  +       +D
Sbjct: 1870 ENEAVVQYALRNRPN-VKIVDTGLGNFGTPGFKSYMGKKFDDKM--SLSRRYFPHRENVD 1926

Query: 432  GFFAVALRR 440
            GF+   L++
Sbjct: 1927 GFYVCKLKK 1935


>gi|152999908|ref|YP_001365589.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS185]
 gi|151364526|gb|ABS07526.1| Fmu (Sun) domain protein [Shewanella baltica OS185]
          Length = 453

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 152/449 (33%), Gaps = 50/449 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L   +   ++    +L   + +        +D+ ++R  +    R+      + D    
Sbjct: 32  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQQAS 89

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
            ++     S   LL     Q          + +   E ++   + +    L    L    
Sbjct: 90  -AVYFASLSASALLEAHAWQ---------EIANAWHELSQSPIDYQQAQALTVESLDDKL 139

Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188
                L       +   +P+WF +       ++  L  + +   P++         D  T
Sbjct: 140 ALIQYLFPATECKAQDLLPDWFWQVCPVDAAQQTQLIAAMSSRPPIWGRAQGITSQDAAT 199

Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
               L               L     ++  +  + +G   +QD ++ +  Q+     +  
Sbjct: 200 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDDH 259

Query: 245 VLDLCAAPGGKTAQLIVSG------------AKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             D C+  GGKT QL                  + + D+    LE+L     R H     
Sbjct: 260 WWDACSGAGGKTLQLHSLMLAKAADNQTSSAGSIISSDIRSNALEELTKRAQRAHFNGIS 319

Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +    +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L + 
Sbjct: 320 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 379

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VK GGI+V++ CSL   ++++VV   L+  P    L P+   +              
Sbjct: 380 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 430

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + + P          +  DG F   + R
Sbjct: 431 MLTVWP--------FEANSDGMFVARMLR 451


>gi|121719340|ref|XP_001276369.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
           clavatus NRRL 1]
 gi|119404567|gb|EAW14943.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
           clavatus NRRL 1]
          Length = 755

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 137/318 (43%), Gaps = 23/318 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  +P  + +    ++ +  + A  L    + 
Sbjct: 273 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 332

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  VLD+ AA
Sbjct: 333 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAA 392

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  +DA    PK    
Sbjct: 393 PGGKTTYISALMRNTGCVVANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKALGG 452

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPC+ TG I + P V  +++  D +     QR LLL  I  V    K GG VV
Sbjct: 453 FDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRNLLLAAIDSVDHTSKTGGYVV 512

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ VLR  P  V+LV      + +      +  +   ++T  +  +
Sbjct: 513 YSTCSVTVEENEAVVQYVLRKRPN-VKLVDTGLGDFGTPGFTAYMGKKFDPKMT--LTRR 569

Query: 423 IDGVSSGMDGFFAVALRR 440
                  +DGFF    ++
Sbjct: 570 YFPHRENVDGFFVSKFKK 587


>gi|45735882|dbj|BAD12915.1| putative proliferating cell nuclear protein P120 [Oryza sativa
           Japonica Group]
 gi|45736012|dbj|BAD13040.1| putative proliferating cell nuclear protein P120 [Oryza sativa
           Japonica Group]
          Length = 682

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 26/318 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                ++  E     +    ++ + ++        L            A  L        
Sbjct: 229 YYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 288

Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I        +         +   +  G +  Q AS+ +PV          ++D+ AAPG
Sbjct: 289 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 348

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A + +++RL  L  N+ R+ +    +   D  +          
Sbjct: 349 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 408

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TGTI + P +  ++  +DI   A  Q++LLL  I  V    K GG +V+
Sbjct: 409 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSKTGGYIVY 468

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CSL   ++E VV   L+     V+LVP    + +          E     + D   + 
Sbjct: 469 STCSLMIPENEAVVDYALKKR--NVKLVPCGLDFGRP---GFIRFREHRFHTSLDKTRRF 523

Query: 424 DGVSSGMDGFFAVALRRL 441
               + MDGFF   L++L
Sbjct: 524 YPHVNNMDGFFVAKLKKL 541


>gi|296817387|ref|XP_002849030.1| nucleolar protein NOP2 [Arthroderma otae CBS 113480]
 gi|238839483|gb|EEQ29145.1| nucleolar protein NOP2 [Arthroderma otae CBS 113480]
          Length = 683

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + +   +  +  A   + +L  +                   +
Sbjct: 241 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 287

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      +  +A  SP  I +    ++ +  + A  L    +    +     
Sbjct: 288 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 347

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  +LD+ AAPGGKT    
Sbjct: 348 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 407

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   + A D SK R + L  N+ RL      +  +DA    PK +  FD VL+DAP
Sbjct: 408 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNLDARTAFPKAVGGFDRVLLDAP 467

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 468 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 527

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + +      ++ +   +  P +  +       +D
Sbjct: 528 ENEGVVQYALRKRPN-VKIVDTGLGSFGTPGFKSYMNKKFDDK-MP-LTRRYYPHRENVD 584

Query: 432 GFFAVALRR 440
           GFF   L++
Sbjct: 585 GFFVCKLKK 593


>gi|310767840|gb|ADP12790.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia sp. Ejp617]
          Length = 472

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 124/266 (46%), Gaps = 21/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241
           E +   L  +     G  +         + S      G++++Q+AS+ +PV         
Sbjct: 53  EPYQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGHM 112

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              V+D+ AAPG KT Q+         + A + S  R++ L  NL R  +    +   D 
Sbjct: 113 PQRVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDG 172

Query: 299 FDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             + P   + FDAVL+DAPCS  G +R+  D L         + A  QR L+      ++
Sbjct: 173 RVFGPALPECFDAVLLDAPCSGEGVVRKDADALRNWSETSTAEIAATQRDLINSAFHALR 232

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S C+L+  ++++V++ +L   P  VE+ PL++ +  + ++A   + EG++ + 
Sbjct: 233 PGGTLVYSTCTLNLSENQQVIRWLLEQYPDAVEIEPLDTLFNGAKEVA---TAEGFLHVF 289

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P + +          GFF   LR++ 
Sbjct: 290 PHIFDSE--------GFFVARLRKVA 307


>gi|255955391|ref|XP_002568448.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590159|emb|CAP96330.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 733

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 142/320 (44%), Gaps = 23/320 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  +P  + +    ++ +  + A  L    + 
Sbjct: 251 CTYYGYTRFLAEKLFNLFTPREAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 310

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +        ++ E P  + + P +  G + +Q AS+ +PV       N  VLD+ +A
Sbjct: 311 LEPVGKWSKVGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASA 370

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  MDA    PK +  
Sbjct: 371 PGGKTTYMSALMRNTGCVVANDASKPRAKGLIGNIHRLGCKNTIVTNMDARTAFPKAMGG 430

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPC+ TG I + P V  +++  D +     QR+LLL  I  V    K GG +V
Sbjct: 431 FDRVLLDAPCTGTGVISKDPGVKTSKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYIV 490

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ VLR  P  V++V      + S      +      ++   +  +
Sbjct: 491 YSTCSVTVEENEAVVQYVLRKRPN-VKIVDTGLGGFGSPGFLSYMGKTFDPKM--ALTRR 547

Query: 423 IDGVSSGMDGFFAVALRRLI 442
                  +DGF+   L++  
Sbjct: 548 YFPHRENVDGFYVCKLKKTA 567


>gi|258571405|ref|XP_002544506.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704]
 gi|237904776|gb|EEP79177.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704]
          Length = 1027

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 153/371 (41%), Gaps = 40/371 (10%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + A   +  +  +   + +L+ +                   +
Sbjct: 188 QLLRTRITDTIRI--LGDLATLGQPRKSRSDYTDLLLQDICTY-----------YSYTPY 234

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      A  +A  +P  + +    ++ +  + A  L    +    +     
Sbjct: 235 LAEKLYSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 294

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  +LD+ AAPGGKT  + 
Sbjct: 295 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYMS 354

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
             + +   V A D +K R + L  N+ RL      +  +DA    PK    FD VL+DAP
Sbjct: 355 ALMRNTGCVMANDANKERAKGLIGNIHRLGCKNTIVTNLDARTAFPKALGGFDRVLLDAP 414

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 415 CSGTGVISKDPSVKTSKTERDFMAIPHTQKQLLLAAIDSTNHASKTGGYIVYSTCSVAVE 474

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSG 429
           ++E VVQ VLR  P  V +V      + S             +  P M    +       
Sbjct: 475 ENEAVVQYVLRKRPN-VRIVDTGLGTFGSEGFKSYKGK----QFDPKMALTRRYFPHREN 529

Query: 430 MDGFFAVALRR 440
           +DGF+   L++
Sbjct: 530 VDGFYVCKLKK 540


>gi|302652446|ref|XP_003018073.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517]
 gi|291181678|gb|EFE37428.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517]
          Length = 690

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + D   +    + +   +  +  A   + +L  +                   +
Sbjct: 238 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 284

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203
             E+L + +      +  +A  SP  I +    ++ +  + A  L    +    +     
Sbjct: 285 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 344

Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
              ++ E P  + + P +  G + +Q AS+ +PV       +  +LD+ AAPGGKT    
Sbjct: 345 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 404

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             + +   + A D SK R + L  N+ RL      +  +DA    PK +  FD VL+DAP
Sbjct: 405 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNLDARTAFPKAIGGFDRVLLDAP 464

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 465 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 524

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + +      ++ +   +  P +  +       +D
Sbjct: 525 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKTYMNKKFDDK-MP-LTRRYYPHRENVD 581

Query: 432 GFFAVALRR 440
           GFF   L++
Sbjct: 582 GFFVCKLKK 590


>gi|222642043|gb|EEE70175.1| hypothetical protein OsJ_30252 [Oryza sativa Japonica Group]
          Length = 688

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 26/318 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                ++  E     +    ++ + ++        L            A  L        
Sbjct: 234 YYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 293

Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I        +         +   +  G +  Q AS+ +PV          ++D+ AAPG
Sbjct: 294 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 353

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A + +++RL  L  N+ R+ +    +   D  +          
Sbjct: 354 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 413

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TGTI + P +  ++  +DI   A  Q++LLL  I  V    K GG +V+
Sbjct: 414 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSKTGGYIVY 473

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CSL   ++E V+   L+     V+LVP    + +          E     + D   + 
Sbjct: 474 STCSLMIPENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRFREHRFHTSLDKTRRF 528

Query: 424 DGVSSGMDGFFAVALRRL 441
               + MDGFF   L++L
Sbjct: 529 YPHVNNMDGFFVAKLKKL 546


>gi|115480547|ref|NP_001063867.1| Os09g0551300 [Oryza sativa Japonica Group]
 gi|50726314|dbj|BAD33889.1| putative nucleolar protein [Oryza sativa Japonica Group]
 gi|113632100|dbj|BAF25781.1| Os09g0551300 [Oryza sativa Japonica Group]
 gi|218202587|gb|EEC85014.1| hypothetical protein OsI_32305 [Oryza sativa Indica Group]
          Length = 699

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 26/318 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                ++  E     +    ++ + ++        L            A  L        
Sbjct: 234 YYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 293

Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I        +         +   +  G +  Q AS+ +PV          ++D+ AAPG
Sbjct: 294 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 353

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A + +++RL  L  N+ R+ +    +   D  +          
Sbjct: 354 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 413

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TGTI + P +  ++  +DI   A  Q++LLL  I  V    K GG +V+
Sbjct: 414 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSKTGGYIVY 473

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CSL   ++E V+   L+     V+LVP    + +          E     + D   + 
Sbjct: 474 STCSLMIPENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRFREHRFHTSLDKTRRF 528

Query: 424 DGVSSGMDGFFAVALRRL 441
               + MDGFF   L++L
Sbjct: 529 YPHVNNMDGFFVAKLKKL 546


>gi|149184704|ref|ZP_01863022.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21]
 gi|148832024|gb|EDL50457.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21]
          Length = 393

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 150/453 (33%), Gaps = 81/453 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMR----KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   S  LL  ++     K      +L   + ++ F     +D+  +R     
Sbjct: 1   MTP--AARVQTSIELLDAIIEAARSKGAPADRILAEWFRNNRFAG--SKDRRAIR----- 51

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
                                               +++Y  +     V  +   A    
Sbjct: 52  ------------------------------------ELVYSAIRACGPVPESGRAAMLRL 75

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
                + +            I+  +  A   + P W  +RL            ++A +  
Sbjct: 76  SESDASLVPLFDGSNYGPAPIDAGEESAEGGVAPAWLAQRLAQSGIDGE---EAEALLGR 132

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             ++L V     D  T +  +             E    +     + EG + VQD  +  
Sbjct: 133 APLELRVNTLKADRATLSLPVETANTAAPHGLRLEPGTQVEQWAEWREGTFEVQDTGSQF 192

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                      +V+DLCA  GGKT   A  + +  ++ A D  + RL +L    +R    
Sbjct: 193 ACLAADANPGETVIDLCAGGGGKTLALAAAMDNLGRLIASDADRGRLSRLAPRAERAGAT 252

Query: 290 AEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
             +   ++           +   DAV++DAPCS TGT RR+P+  W  D  ++ +    Q
Sbjct: 253 IIETRLLNPKREFEALADLEGQADAVMIDAPCSGTGTWRRNPEARWRLDEAELARLTALQ 312

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +LL      VKPGG +++  CSL  ++     +  L+          +N+   + I + 
Sbjct: 313 SELLDLATRLVKPGGRIIYVTCSLLDEEGAGQFEAFLKR---------VNTFSSQEISLP 363

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
                   IR+TP           G DGFF   
Sbjct: 364 AGRPRGNGIRLTP--------YHDGTDGFFIAR 388


>gi|224000816|ref|XP_002290080.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973502|gb|EED91832.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 494

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 129/325 (39%), Gaps = 30/325 (9%)

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNA- 195
           Q +A +    +   +   + +G    L   +A   P  + + V       +  A  L   
Sbjct: 118 QDMAELFGYLQELVDYFLSMFGPNECLEFLEASDKPRPLVVRVNTLKARRKDLAAALMKR 177

Query: 196 -------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
                        G+++ E    I + P +  G + +Q A++  PV   G      VLD+
Sbjct: 178 GVRLDPLAPWSKVGLKIYESTVPIGATPEYLAGHYMLQSAASMCPVMALGPQPGDRVLDM 237

Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK- 304
            AAPGGKT+ +   + +   V A D+   R +    NL RL +        D      + 
Sbjct: 238 SAAPGGKTSYVSQLMKNKGVVIANDLKPERQKATVANLHRLGVRNVVTCVYDGRKIGNQL 297

Query: 305 -KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV-----KPG 358
              FD +L+DAPCS  G I R P V   R   D+ + A  Q++LLL  I  +     K G
Sbjct: 298 RNSFDRILLDAPCSGLGVISRDPSVKVQRTIPDVQRCAHLQKELLLAAIDALNAKSKKGG 357

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S CS+   ++EEVV  +L    + +    L+                   R  P 
Sbjct: 358 GCMVYSTCSVAVAENEEVVNYLLSKRDVKLVETGLDFGKPGFTRFEHK-------RFHPS 410

Query: 419 --MLEKIDGVSSGMDGFFAVALRRL 441
             +  +       MDGF+   +++L
Sbjct: 411 LALTRRFYPHVHNMDGFYVAKIQKL 435


>gi|254569392|ref|XP_002491806.1| Probable RNA m(5)C methyltransferase [Pichia pastoris GS115]
 gi|238031603|emb|CAY69526.1| Probable RNA m(5)C methyltransferase [Pichia pastoris GS115]
 gi|328351694|emb|CCA38093.1| Putative ribosomal RNA methyltransferase Nop2 [Pichia pastoris CBS
           7435]
          Length = 608

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 27/320 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                   +  E+L N +     +   +A      + +            A KL    + 
Sbjct: 228 CTYFGYTPFLAEKLFNLFSPSEAIEFFEANEIARPVTVRTNTLKARRRDLAQKLVNKGVN 287

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I        ++ +    I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 288 LQPIGKWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERILDMAAA 347

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT     ++ +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 348 PGGKTTFISAMMKNTGCVFANDSNKARTKSLIANIHRLGCRNTVVSNYDAREFPKVIGGF 407

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +  +V   R   D ++    QR+LLL  I  V    + GGI+V+
Sbjct: 408 DRVLLDAPCSGTGVIAKDSNVKVARTEKDFIQIPYLQRQLLLSAIDSVNANSRSGGIIVY 467

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E VV   L+  P  V LV       K        +    ++  P  ++  
Sbjct: 468 STCSVAVEENEAVVNYALKKRPN-VRLVDTGLTIGKP-----GFTSYRGMKYHPSVNLTR 521

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           +    +  +DGFF    +++
Sbjct: 522 RYYPHTYNVDGFFVAKFKKI 541


>gi|50291427|ref|XP_448146.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527457|emb|CAG61097.1| unnamed protein product [Candida glabrata]
          Length = 619

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 138/342 (40%), Gaps = 37/342 (10%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R  S     LL+ I        +  E+L N +     L   +A      I +     
Sbjct: 222 AEGRSRSEYTDRLLKDICEYFGYTPFLAEKLFNLFSPAEALEFFEANEIARPITIRTNTL 281

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 282 KTSRRDLAQALVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGNYILQAASSFLPV 341

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  VLD+ +APGGKT  +   + +   V A D +K+R + L  N+ RL     
Sbjct: 342 VALDPQENERVLDMASAPGGKTTYISALMKNTGCVFANDANKKRTKSLIANIHRLGCTNT 401

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD VL+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 402 IVCNYDAREFPKVIGGFDRVLLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 461

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E VV   LR  P             K +D  + 
Sbjct: 462 AIDSVDANSKKGGVIVYSTCSVAVEEDEAVVDYALRKRPN-----------VKLVDTGLQ 510

Query: 407 LSPEGWI-----RITPD--MLEKIDGVSSGMDGFFAVALRRL 441
           +  EG++     +  P   +  +    +  +DGFF    +++
Sbjct: 511 IGKEGFVSFRGKKFHPSLKLTRRYYPHTYNVDGFFVAKFQKI 552


>gi|302691038|ref|XP_003035198.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8]
 gi|300108894|gb|EFJ00296.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8]
          Length = 422

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 122/318 (38%), Gaps = 27/318 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE---TWAHKLNAVMLP 199
           A      E+   +L   +     +   +A   P  + +            A  L    + 
Sbjct: 33  ASYYGYNEFLATKLFQLFSVPEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQTLINRGVN 92

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       +  VLD+ +A
Sbjct: 93  LEPIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALDPQPHERVLDMASA 152

Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +     +   V A D +K+R + L  N+ R+      +   D  ++      F
Sbjct: 153 PGGKTTHIAALLQNTGVVFANDANKQRTKSLTANVHRMGCKNVVVCSYDGREFPKVIGGF 212

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V   +   D    A  Q++L+L  +  V    K GG VV+
Sbjct: 213 DRVLLDAPCSGTGVISKDASVKINKSERDFTLLAHLQKQLILCALDSVTPNSKTGGYVVY 272

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E V+   LR  P  V+LV     + +      A +        P   +  
Sbjct: 273 STCSVTVDENEAVIDYALRKRPN-VKLVDTGLEFGRP-----AYTSFRGKTFHPSVGLAR 326

Query: 422 KIDGVSSGMDGFFAVALR 439
           +       MDGFF    +
Sbjct: 327 RFYPHVHNMDGFFVAKFK 344


>gi|260575597|ref|ZP_05843595.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2]
 gi|259022240|gb|EEW25538.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2]
          Length = 388

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 143/452 (31%), Gaps = 78/452 (17%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L  V+    S    L      S F      D++ VR +V   +R 
Sbjct: 1   MTP--AARLSAAIDILDRVLA-GNSAEQALTNWGRASRFAG--SGDRLAVRDLVFAAIRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                A+        L      +   LR              A VD       +      
Sbjct: 56  RRSFAALGGAETGRGL------VLGGLR-------------DAGVDPGPLFTGQGHAPPP 96

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             +  +     +                 P+W    L    G +    +  A  +   + 
Sbjct: 97  LTEADSLPPTELPDLVALDC---------PDWLAPPLRAALGADFA-PVMAALRARASVF 146

Query: 180 LTVK---FDIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDAS 229
           L V       E     L +  +             + E    I S   +  G+  +QDA+
Sbjct: 147 LRVNSARISREGAIAALASEGIAAQPHGLSSFALEVTENARKIQSSQTYLTGLVELQDAA 206

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHL 288
           +   VQ     +   VLD CA  GGKT  +  +G     A D + RR+  L    +R  +
Sbjct: 207 SQAVVQALPLRSGQRVLDYCAGGGGKTLAMAAAGGLQLFAHDANPRRMRDLPARAERAGV 266

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               +   D   + P   FD VL D PCS +G+ RR P+  W      + +    Q  +L
Sbjct: 267 RLRLLETADLPRHAP---FDLVLTDVPCSGSGSWRRAPEAKWALTPARLAELCRIQAGIL 323

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    V PGG + ++ CS+ + ++   +   L  SP  +                    
Sbjct: 324 DRVAPLVAPGGHLAYATCSMLQAENSAQIAAFLARSPGWLL------------------- 364

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                        ++     G DGFF   LRR
Sbjct: 365 ----------QSSRLFTPLDGGDGFFVAILRR 386


>gi|162148166|ref|YP_001602627.1| ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786743|emb|CAP56326.1| putative ribosomal RNA small subunit methyltransferase B
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 433

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 133/437 (30%), Positives = 200/437 (45%), Gaps = 29/437 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
             R ++  ++  V+  R  L   LD            +     + A V   LR +     
Sbjct: 23  PTRDIAFDIVQGVLEHRRMLETSLDQSAAARDADARDRAAAHRLAATV---LRHMGTAGM 79

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           VL+  L    P     ++ +L + VAQIL+LD   +A V  AV  A+R +    FA LVN
Sbjct: 80  VLEPFLKKEPP---LPVRTVLLIGVAQILFLDTPAHAAVGTAVSLARR-RGLVPFAGLVN 135

Query: 126 SILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           ++LRRV++     L+ +      +P W      +         +++A      +DLT++ 
Sbjct: 136 AVLRRVAQAGAGALEGLDQARLDVPPWLWGAWGSL-----ARPVAEALGQEAPLDLTLRP 190

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            +         VMLPTG +RL      +  LPG+A+G +WVQDA+A++P +L        
Sbjct: 191 GLPEAERPPGGVMLPTGTLRLPAGT-RVADLPGYAQGAFWVQDAAAALPARLLAPRAGER 249

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDYCP 303
           + DLCAAPGGKTAQL V+GA+VTA++    RL +L+ N           +++ DA  + P
Sbjct: 250 IADLCAAPGGKTAQLAVAGAEVTAIEREPGRLARLKENWTASDWPTGCKLVQGDAATWRP 309

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
               DAVL+DAPCS+TGT  RHPDVLW +       +    R+     +    P G+   
Sbjct: 310 DAPLDAVLLDAPCSATGTAHRHPDVLWIKRPRLTALTEGQDRRRATCCVPC--PAGL--- 364

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
             C +         +   R+      L P      +   +  AL+ EGW+R  P +    
Sbjct: 365 --CGVLA---PARRRAGTRTRGRGDGLEPDPFTAEELAVLPEALTKEGWLRTHPGLW--- 416

Query: 424 DGVSSGMDGFFAVALRR 440
                GMDGFFA   RR
Sbjct: 417 -TEQGGMDGFFAARFRR 432


>gi|304409500|ref|ZP_07391120.1| Fmu (Sun) domain protein [Shewanella baltica OS183]
 gi|307303858|ref|ZP_07583611.1| Fmu (Sun) domain protein [Shewanella baltica BA175]
 gi|304352018|gb|EFM16416.1| Fmu (Sun) domain protein [Shewanella baltica OS183]
 gi|306912756|gb|EFN43179.1| Fmu (Sun) domain protein [Shewanella baltica BA175]
          Length = 463

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 150/449 (33%), Gaps = 50/449 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L   +   ++    +L   + +        +D+ ++R  +    R+      + D    
Sbjct: 42  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQQ-E 98

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S++     S   LL     Q          +     E ++   + +    L    L    
Sbjct: 99  SAIYFASLSASALLEAHAWQ---------DIASAWHELSQSPIDYQQAQALAVESLDDKL 149

Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188
                L       +   +P+WF +       ++  L  + +   P++         D  T
Sbjct: 150 ALIQHLFPATEFKAQDLLPDWFWQVCPVDTAQQTQLIAAMSSRPPIWGRAQGITSQDAAT 209

Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
               L               L     ++  +  + +G   +QD ++ +  Q+        
Sbjct: 210 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPYAH 269

Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             D C+  GGKT                 S   + + D+    LE+L     R H     
Sbjct: 270 WWDACSGAGGKTLQLRSLMLAKAADNQTSSAGSIISSDIRSNALEELTKRAQRAHFNGIS 329

Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +    +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L + 
Sbjct: 330 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 389

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VK GGI+V++ CSL   ++++VV   L+  P    L P+   +              
Sbjct: 390 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 440

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + + P          +  DG F   + R
Sbjct: 441 MLTVWP--------FEANSDGMFVARMLR 461


>gi|261214775|ref|ZP_05929056.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
 gi|260916382|gb|EEX83243.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
          Length = 252

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 102/220 (46%), Positives = 136/220 (61%), Gaps = 9/220 (4%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           QD +AS+P +L G +    V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L  NL+R
Sbjct: 38  QDVAASLPARLMGDIKGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLER 97

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L   A+ +   +  D+ P +LFDAVL+DAPCSSTGT+RRHPDV WT+   DI K A  Q 
Sbjct: 98  LGFEAKTV-ATNLMDFKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQG 156

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           KLL    + VKPGG++VFSNCSL   + EE+ +K     P    L P          +  
Sbjct: 157 KLLAHAATLVKPGGVIVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEG 212

Query: 406 ALSPEGWIRITPDMLE----KIDGVSSGMDGFFAVALRRL 441
            ++ EG++R TP  L       +   +GMDGFFA   +R+
Sbjct: 213 LVTAEGFLRSTPADLPPDRLDGNPHMAGMDGFFAARFKRV 252


>gi|282163719|ref|YP_003356104.1| NOL1/NOP2/sun family putative RNA methylase [Methanocella
           paludicola SANAE]
 gi|282156033|dbj|BAI61121.1| NOL1/NOP2/sun family putative RNA methylase [Methanocella
           paludicola SANAE]
          Length = 320

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 20/309 (6%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVML--- 198
           A     PE+   R E F         S       YI +  ++ +      +L        
Sbjct: 18  AKKYRYPEYMVARFERFVPDLEKFLASMEAPPRTYIRVNTLRINANALTKRLTDKGFTLR 77

Query: 199 ---PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
                  + +   P SI +   +  G ++VQD S+ IP           V+D+ A+PGGK
Sbjct: 78  ETDIPDCLEVTAEPYSIGASAEYLLGYFYVQDKSSVIPPLALAPQPGDVVIDMAASPGGK 137

Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311
           T Q   ++ +   + A++V   R+  LR NL R  +    +  MDA D    +   D +L
Sbjct: 138 TTQLAQMMDNKGLLIAIEVEIARIAGLRSNLGRCGVMNTALFHMDARDIKKLEVKADKIL 197

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           +DAPC+  G I +      +R   DI   +  Q +L+    + +KPGG++V+S CS   +
Sbjct: 198 LDAPCTGEGVIAKDRTRKTSRGESDIQFCSGLQEELIDAAYACMKPGGVLVYSTCSFAPE 257

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           ++E +V  +++   + VE VP      +S  DM      +   R+ P +         G 
Sbjct: 258 ENERIVDHLIKKYGMKVEPVPYGEPGIESFGDMKFDPQVKNARRLYPHL--------HGT 309

Query: 431 DGFFAVALR 439
            GFF   L+
Sbjct: 310 SGFFVARLK 318


>gi|323702581|ref|ZP_08114243.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532400|gb|EGB22277.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 448

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 122/311 (39%), Gaps = 25/311 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM---L 198
           ++ +P  F +R+     +E   +   +        L +     D   +  ++   +    
Sbjct: 1   MTQLPVQFIQRMRETMTEEEFTSFMASYQERPRQGLRLNPLKIDRAEFVARMPFSLTPVP 60

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                      +     P  A G++++Q+ SA   V++        VLDLCAAPGGK   
Sbjct: 61  WCDTGFYYSEADRPGKHPYHAAGLYYIQEPSAMAVVEVLQPEAGDKVLDLCAAPGGKATH 120

Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVD 313
               +     + A +++ +R   L  NL+R       +               FD ++VD
Sbjct: 121 IAGCLGHTGLLVANEINAKRARALSENLERWGARHILVTNEQPEKLAGRFAGFFDKIVVD 180

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+ P+         + + A  Q+ +L      +KPGG++V+S C+  + ++
Sbjct: 181 APCSGEGMFRKLPEACTDWSEAKVAQCAVIQKDILPLAGRMLKPGGLMVYSTCTFSRAEN 240

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           EE ++  L + P         +++++  D+         +R+ P  +           G 
Sbjct: 241 EEQIENFLGNHPEFTLEPVPKASFFQPGDLPD------TVRLWPHKISGE--------GH 286

Query: 434 FAVALRRLIQP 444
           F   LR+  +P
Sbjct: 287 FIARLRKSGEP 297


>gi|296283759|ref|ZP_06861757.1| tRNA and rRNA cytosine-C5-methylase [Citromicrobium bathyomarinum
           JL354]
          Length = 396

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 93/454 (20%), Positives = 145/454 (31%), Gaps = 79/454 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMR----KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  +L  V+     +      ++      + +     +D+  VR     
Sbjct: 1   MTP--AARVQAAIAILDKVIEAAKGQGAPADRIVADWAKANRYAG--SKDRRAVR----- 51

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
                                               +++Y  +     V  +   A    
Sbjct: 52  ------------------------------------ELVYDAIRHCGPVPESGRAAMLAL 75

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
             R           +     I+  + +A     P W  +RL     K        A +  
Sbjct: 76  AKRDTTISALFDGSQYGPAAIQPEEPVAKSGFAPAWLAKRLSASDVKGA---EGAALMGR 132

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             +D+ V     D  +         L        E    I   P + EG   VQD  + I
Sbjct: 133 APLDVRVNALKADRASIDLPEPGEPLAAPHALRFEAGTQIEQWPAYREGRIEVQDHGSQI 192

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                      +V+DLCA  GGKT   A  + +  ++ A D  KRRL +L    +R    
Sbjct: 193 ACLAAEARAGETVIDLCAGAGGKTLALAAAMENRGRLIASDTDKRRLSQLGPRAERAGAS 252

Query: 290 AEDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
             +   +D               D VL+DAPCS TGT RR P+  W    D + + +  Q
Sbjct: 253 NVEQRLLDPGKEMEALGDLAGQADCVLIDAPCSGTGTWRRKPEAKWRLTPDRLARFSATQ 312

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSIDM 403
             LL  G   VKPGG +VF  CSL  ++  +   + L S      +L PL     +  + 
Sbjct: 313 DALLALGAKLVKPGGRLVFITCSLLDEEGADRFARFLDSHDGWRADLPPLPLGRPRGGEN 372

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           A  +              ++     G DGFF   
Sbjct: 373 AQGI--------------RMSPFHDGTDGFFVAR 392


>gi|297803436|ref|XP_002869602.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315438|gb|EFH45861.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 650

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           + +    I + P +  G + +Q AS+ +PV          V+D+ AAPGGKT  +   + 
Sbjct: 285 VYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMK 344

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318
           +   + A ++   RL+ L  NL R+ +    +   D  +      +   D VL+DAPCS 
Sbjct: 345 NTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRELPKVLGQNSVDRVLLDAPCSG 404

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374
           TG I +   V  ++  DDI K A  Q++L+L  I  V    K GG +V+S CS+   ++E
Sbjct: 405 TGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSIMIPENE 464

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDG 432
            V+   L++    V+LVP    + +    +         R  P +    +       MDG
Sbjct: 465 AVIDYALKNR--DVKLVPCGLDFGRPGFSSFIEH-----RFHPSLEKTRRFYPHIHNMDG 517

Query: 433 FFAVALRRL 441
           FF   L+++
Sbjct: 518 FFVAKLKKM 526


>gi|294139860|ref|YP_003555838.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella violacea
           DSS12]
 gi|293326329|dbj|BAJ01060.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella violacea
           DSS12]
          Length = 459

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 155/463 (33%), Gaps = 43/463 (9%)

Query: 1   MKSGMNARLVSS-------HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53
           M +   A+  +         L + +M K+     ++   +  +       +D+ ++R  +
Sbjct: 15  MNAETPAQKRALSYANTILQLFTQIMAKKQPADRIVGEYFRVNKKHG--SKDRRVIRESL 72

Query: 54  NVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
               R+   ++        S+      +   +L ++  ++       +           +
Sbjct: 73  FALFRWWGWLNKFSTSTGTSTANTGTQAWFTMLTLNA-RLESHSWEPFIAAWTGFSGQGK 131

Query: 114 DKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
           +      + L N   +     +           ++P WF +       ++R+  +     
Sbjct: 132 NLTLEAGSALENVSEKCDWLTRQFPTISFTTDDLVPAWFWQTCPIQDAEQRLAMVQALSS 191

Query: 174 SPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
            P         +      KL        A    +  I L     ++  L  + EG   +Q
Sbjct: 192 RPPIWARVQNIETNEAIEKLAKLDITTTASEYFSDSISLGHKSINLNGLSLYREGELEIQ 251

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDVSKRRLEK 278
           D  + +  Q+     N +  D C+  GGK+ Q           +   + A DV ++ LE+
Sbjct: 252 DLGSQVVGQVCNPSPNDNWWDTCSGAGGKSLQLRSLMLAKDKQATGTIIASDVRRKPLEE 311

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           L     R            + D       FD VLVDAPCS TGT RR+PD+ W    + +
Sbjct: 312 LAKRAKRAGFKGITASPWKSDDLPVAHNHFDGVLVDAPCSCTGTWRRNPDMRWIDAIETV 371

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           +     Q  +L +    VK G  +V++ CSL   ++E+VV   L         V  +   
Sbjct: 372 LDKPGLQLDILSRSSQAVKAGATLVYATCSLSPLENEDVVNAFLAKHTDFSLEVTTHPFT 431

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                M + L                    +  DG F   ++R
Sbjct: 432 GIEASMHLIL-----------------PYQADTDGMFVARMKR 457


>gi|212635464|ref|YP_002311989.1| Sun protein [Shewanella piezotolerans WP3]
 gi|212556948|gb|ACJ29402.1| Sun protein, putative [Shewanella piezotolerans WP3]
          Length = 417

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 148/448 (33%), Gaps = 68/448 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L  V+++   L       +       L   +Q  +  +V   +     +   L 
Sbjct: 24  ELVISILDLVLKEGKPLDRAYSQHFS---GLQLEPSEQGRIT-LVTGAILRRLNLYCFLS 79

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            V    + R    L  +  +   Q+    +     VD   E A R +  +    L +   
Sbjct: 80  DVKPEEMARMGSRLLNVWHL-FHQLPLPKMKYALQVDEQ-ELATRIETAKQKPVLWDGC- 136

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLT-VKFDI 186
                               P+W  E  +   G        +    +  ++ +  +K   
Sbjct: 137 --------------------PDWLDEMGQAQMGDRWPAERAALNKPAKRFLRVNTLKCTR 176

Query: 187 ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +  A KL    + T                ++     F +G +  QDA + +  +     
Sbjct: 177 DELAKKLRNERVQTVEVEGVETALEVVSDSALFRTECFKKGWFEQQDAGSQLIAKALDAK 236

Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
             + V+D CA  GGK    +  +    ++ A+DV + +L+ L+    R   +     II 
Sbjct: 237 PGMRVVDACAGAGGKTLSISAQMEGKGRLLAMDVEQWKLDNLKQRARRAAAHNVETRIIA 296

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                   K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      V
Sbjct: 297 SSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRMV 356

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GGI++++ CS+  +++   V   L  +     +   N                     
Sbjct: 357 KVGGILIYATCSIMPEENRHQVDAFLAENKHFRFIEDEN--------------------- 395

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  I    +G DGF+   L R+ +
Sbjct: 396 -------ISPAETGFDGFYYAKLERIAE 416


>gi|332978163|gb|EGK14897.1| NOL1/NOP2/sun family protein [Desmospora sp. 8437]
          Length = 459

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 123/307 (40%), Gaps = 22/307 (7%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY------IDLTVKFDIETWAHKLNAVMLPTG 201
           +PE +++++     +E  + I      P        + L+V    +    +L  V     
Sbjct: 4   LPEDYQKQMRELLKEEYPVFIRTYDDPPHRGLRINTLKLSVAEGRQRLPFRLEPVPWCDT 63

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258
           G       +        A G++++QD SA  PV+         +LDLCAAPGGKT Q   
Sbjct: 64  GFFYDHDRDRPGKHVYHAAGLYYIQDPSAMAPVEALQPRPGEKILDLCAAPGGKTTQIAA 123

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPC 316
            +     + A ++SK R + L  NL+R  +    I+  D           FD VL+DAPC
Sbjct: 124 HMKGKGILVANEISKERRKTLVENLERCGVPNALILGEDPRHLSTRFTGWFDRVLIDAPC 183

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G  R+ PD            +A  Q  +L      ++PGG +V+S C+ + +++E V
Sbjct: 184 SGEGMFRKDPDTRERWSHRSTEAAAELQLSILEAAAPMLRPGGRLVYSTCTFNPRENEGV 243

Query: 377 VQKVLRSSPIPV---ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           +Q+ L   P           +    +   +  + +     R+ P  L+          G 
Sbjct: 244 LQRFLHQHPHFTPGQVPQAAHYRPARPDWIDASPTLAKGARLWPHHLKGE--------GH 295

Query: 434 FAVALRR 440
           F   L +
Sbjct: 296 FVAVLEK 302


>gi|269859444|ref|XP_002649447.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi
           H348]
 gi|220067210|gb|EED44677.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi
           H348]
          Length = 311

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 22/303 (7%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
            P+   E   +   K+R + +    +     D+           ++  +     GI    
Sbjct: 21  FPKKEVEVFLDANEKKRPIILRVNTMLKRRKDILNLLYQRKV--EMEKLEWCEEGIIAFS 78

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264
               + + P +  G + VQ A++ +PV      N+L+V+DLCAAPGGKT  +   + +  
Sbjct: 79  SAVPLGATPEYLAGYYIVQSANSFLPVLNLELNNDLTVVDLCAAPGGKTTHIAAIMNNTG 138

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
            V A ++ K R   LR N+ R+      I  MDA  +      D VL+DAPCS TG I +
Sbjct: 139 IVYANEICKERTYALRSNIQRMGFTNCIITNMDAKLFNIG-KVDRVLLDAPCSGTGVISK 197

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
              +  ++  D+I K    Q+ L+L     +KP GI+++S CS   +++EE+V+ ++R+ 
Sbjct: 198 DMSIKTSKSLDEIKKLQREQKILILHAFDMLKPNGILMYSTCSFLVEENEEIVEHLIRNR 257

Query: 385 PI------PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                    V +       +K  D +  L      RI P +          MDGFF   +
Sbjct: 258 KNAKIQNLDVNIGKDGFMSFKGQDFSNELRKAK--RIYPHV--------HNMDGFFYCKI 307

Query: 439 RRL 441
           +++
Sbjct: 308 KKI 310


>gi|84994868|ref|XP_952156.1| nucleolar protein [Theileria annulata strain Ankara]
 gi|65302317|emb|CAI74424.1| nucleolar protein, putative [Theileria annulata]
          Length = 463

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 86/368 (23%), Positives = 148/368 (40%), Gaps = 25/368 (6%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           ++      D   +    E+ +         K +NS  R       EL Q +       E 
Sbjct: 102 ELTGNKSVDLMDLSTVKERIENICGILSKWKSLNSTTRNRESYINELKQLVTVYYGYSEE 161

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM--------LPT 200
             +     +     +   DA   PL + +         +  A  L               
Sbjct: 162 LSDYFFKLFNPLEAIQFFDANEQPLPLTIRTNTLKTKRKDLAVNLINRGANVDPIGDWTK 221

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
            G+ +      I + P +  G + +Q AS+ IPV       N  +LD+CAAPGGKT  + 
Sbjct: 222 EGLVVHSSKVPIGATPEYLAGHYILQSASSLIPVLSLSPKPNEMILDMCAAPGGKTTHIG 281

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPC 316
             + +   + A D +K+R + L  N+ RL +    +      +        D +L+DAPC
Sbjct: 282 QLMNNTGILFANDSNKQRCKSLVSNIHRLGILNSIVCNYKGEELLKVLPKMDRILLDAPC 341

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G I R P +   R+  D+ +++  Q++LL   I+ VKP GI+V+S CSL  +++E+V
Sbjct: 342 SGLGVISRDPSIKIKRNLKDLQRNSNLQKQLLSVSINLVKPNGIIVYSTCSLSIEENEQV 401

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML---EKIDGVSSGMDGF 433
           +   L+     ++L+PL            A+S     +  P +     +       +DGF
Sbjct: 402 LHYCLKKF--NIKLLPLGLEIGSP-----AISNFRGKKFHPSISKFARRFYPHKHNLDGF 454

Query: 434 FAVALRRL 441
           F   + +L
Sbjct: 455 FIAKIIKL 462


>gi|168051136|ref|XP_001778012.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670660|gb|EDQ57225.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 492

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 32/374 (8%)

Query: 77  RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
           +    L  +LR          + D   V  + + A R +       +             
Sbjct: 117 KGPPDLPNILR---------RIKDIVRVLSSFK-ALRPEGAARADYVKQLSSDLSLYYGY 166

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196
                   + + P            K R +++    +     DL                
Sbjct: 167 NDFLISTFLQMFPPAEVLEFLESNEKPRPISLRTNTLKSRRRDLAQVLINRGVNLDPLGK 226

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
               G + + E    + + P +  G + +Q  S+ +PV          V+D+ AAPGGKT
Sbjct: 227 WTKVGLV-VYESQVPVGATPEYMAGHYMLQSGSSFLPVMALAPQEKERVVDMAAAPGGKT 285

Query: 257 AQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAV 310
             +   + +   + A ++ + R++ L  NL R+ +    I   D      K   +  D V
Sbjct: 286 TYIAALMKNTGVIYANELKEPRIKSLSANLHRMGVTNTIICNYDGRQLPHKLGLRSVDRV 345

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNC 366
           L+DAPCS TG + +   V  T+  +DI + A  Q++L+L  I  V    K GG +V+S C
Sbjct: 346 LLDAPCSGTGVVGKDESVKVTKSAEDIQRCAFLQKELILAAIDMVDANSKTGGYLVYSTC 405

Query: 367 SLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S+   ++E VV   LR   + +    L      + K  +     + +   R  P +    
Sbjct: 406 SVMVAENEAVVDYALRKRDVKIVPTGLEFGREGFTKFRESRFHHTLKNTRRFYPHV---- 461

Query: 424 DGVSSGMDGFFAVA 437
                 MDGFF   
Sbjct: 462 ----HNMDGFFVAK 471


>gi|50310429|ref|XP_455234.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644370|emb|CAG97942.1| KLLA0F03399p [Kluyveromyces lactis]
          Length = 619

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 129/336 (38%), Gaps = 27/336 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  +  +     LL+ I        +  E+L N +     +   +A      + +     
Sbjct: 216 AEGKSRTEYVDRLLKDICHYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPVTIRTNTL 275

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 276 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 335

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 336 IALDPQENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNT 395

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 396 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFMQIPHLQKQLLLS 455

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+   ++E VV   LR  P       +     K       
Sbjct: 456 AIDSVDSNSKTGGVIVYSTCSVAVDENEAVVDYALRKRPN------VKLVETKLAIGKEG 509

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRR 440
            +        P   M  +    +  +DGFF    ++
Sbjct: 510 FTSYRGKTFHPSVKMTRRYYPHTYNVDGFFVAKFQK 545


>gi|315266772|gb|ADT93625.1| Fmu (Sun) domain protein [Shewanella baltica OS678]
          Length = 463

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 153/449 (34%), Gaps = 50/449 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L   +   ++    +L   + +        +D+ ++R  +    R+      + D    
Sbjct: 42  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQ--- 96

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
               ++       L  S   +L        + +   E ++   + +    L    L    
Sbjct: 97  ----QESAVYFASLSASA--LLEAHT-WQDIANAWHELSQTPIDYQQAQALAVESLDDKL 149

Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188
                L       +   +P+WF +       ++  L  + +C  P++         D  T
Sbjct: 150 ALIQYLFPATEFKAQDLLPDWFWQVCPVDAAQQTQLIAAMSCRPPIWGRAQGITSQDAAT 209

Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
               L               L     ++  +  + +G   +QD ++ +  Q+     +  
Sbjct: 210 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAH 269

Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             D C+  GGKT                +S   + + D+    LE+L     R +     
Sbjct: 270 WWDACSGAGGKTLQLRSLMLAKAADNQTLSAGSIISSDIRSNALEELTKRAQRANFNGIS 329

Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +    +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L + 
Sbjct: 330 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 389

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VK GGI+V++ CSL   ++++VV   L+  P    L P+   +              
Sbjct: 390 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 440

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + + P          +  DG F   + R
Sbjct: 441 MLTVLP--------FEANSDGMFVARMLR 461


>gi|302828600|ref|XP_002945867.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f.
           nagariensis]
 gi|300268682|gb|EFJ52862.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f.
           nagariensis]
          Length = 829

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 31/325 (9%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV-------- 196
                ++  +   N +     L + +A   P  I L              A+        
Sbjct: 223 YYGYNDFMIDMYLNMFSVAEALELMEANEVPRPITLRTNTLRTRRRELAAALIQRGVSLD 282

Query: 197 ---MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                   G+ + E    I + P +  G + +Q AS+ +PV         +V+D+ AAPG
Sbjct: 283 PIGPWSKVGLVVYESKVPIGATPEYMAGHYMLQGASSFMPVMALAPQPEETVVDMAAAPG 342

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A ++SK RL+ +  NL RL +    +   D  +      ++  
Sbjct: 343 GKTTYIAALMRNTGTIFANEISKDRLKSITGNLTRLGVTNTIVCNYDGRELPGVLGERSV 402

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG + + P V  ++   DI +    Q++LLL  I  V      GG +V+
Sbjct: 403 DRVLLDAPCSGTGVVSKDPTVKTSKSQQDIWRCGHLQKELLLAAIDMVDANSPTGGYIVY 462

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421
           S CS+  ++ E ++   LR   + V    L       +            R  P      
Sbjct: 463 STCSVCVEEDEVIINYALRKRNVKVVPTGLEFGREGFVRYR-------DFRFHPSLKHAR 515

Query: 422 KIDGVSSGMDGFFAVALRRLI-QPK 445
           +    +  +DGFF   L++L  +PK
Sbjct: 516 RFYPHAHNLDGFFVCKLKKLSNEPK 540


>gi|297796467|ref|XP_002866118.1| hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311953|gb|EFH42377.1| hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 674

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 21/250 (8%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           + +    I + P +  G + +Q AS+ +PV       N  ++D+ AAPGGKT  +   + 
Sbjct: 314 IYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMK 373

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318
           +   + A ++   RL+ L  NL R+ +    +   D  +      +   D VL+DAPCS 
Sbjct: 374 NTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSG 433

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374
           TG I +   V  T+  D+I K A  Q++LLL  I  V    K GG VV+S CS+   ++E
Sbjct: 434 TGIISKDESVKITKTVDEIKKFAHLQKQLLLGAIDMVDANSKTGGYVVYSTCSIMVTENE 493

Query: 375 EVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
            V+   L+   + +    L      + +  +     S +   R  P +          MD
Sbjct: 494 AVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYPHV--------HNMD 545

Query: 432 GFFAVALRRL 441
           GFF   L+++
Sbjct: 546 GFFVAKLKKM 555


>gi|225554205|gb|EEH02543.1| nucleolar protein NOP2 [Ajellomyces capsulatus G186AR]
          Length = 704

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 136/318 (42%), Gaps = 23/318 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L   +      A  +A  SP  + +    ++ +  + A  L    + 
Sbjct: 258 CTYYGYTPFLAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVV 317

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  VLD+ AA
Sbjct: 318 LEPVGKWSKVGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAA 377

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      I  +DA    PK    
Sbjct: 378 PGGKTTYISALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILGG 437

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS----FVKPGGIVV 362
           FD VL+DAPCS TG I + P++  ++   D +     Q++LLL  I       K GG +V
Sbjct: 438 FDRVLLDAPCSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIV 497

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ  LR+ P  V++V      + +      +  +   ++   +  +
Sbjct: 498 YSTCSVTVEENEAVVQYALRNRPN-VKIVDTGLGNFGTPGFKSYMGKKFDDKM--SLSRR 554

Query: 423 IDGVSSGMDGFFAVALRR 440
                  +DGF+   L++
Sbjct: 555 YFPHKENVDGFYVCKLKK 572


>gi|262089596|gb|ACY24694.1| Sun protein [uncultured organism]
          Length = 301

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 132/309 (42%), Gaps = 32/309 (10%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVMLPTGGIR 204
            P W +++L+ F+  E   AI  A  +   + L V       + + ++L  V        
Sbjct: 7   HPRWLQKQLKAFWP-EHWQAICAANNAHPPLILRVNRRHGSRDEYLNELRTVGFDAEACP 65

Query: 205 LKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                        + +LPGFAEG   VQD +A +   L        VLD C APGGKT  
Sbjct: 66  FSRDGIRLLAACDVTTLPGFAEGRVSVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCH 125

Query: 259 LIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVD 313
           L+ +      V A+D+ ++RL ++R NL RL L A            +   + F  +L+D
Sbjct: 126 LLEAEPALAGVVAVDLEQKRLVRVRENLQRLGLEAELIAADARAVDAWWDGQAFQRILLD 185

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS+TG IRRHPD+  TR  +DI   A  Q ++L      +  GGI++++ CS    ++
Sbjct: 186 APCSATGVIRRHPDIKLTRQPEDITALAQLQGEMLDALWPTLAVGGILLYATCSTLPTEN 245

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
            EV++  L  +    EL                               ++    +G DGF
Sbjct: 246 TEVIEAFLARTSGARELDIAGPFGLPQP-----------------HGRQLLAQENGHDGF 288

Query: 434 FAVALRRLI 442
           +   L ++ 
Sbjct: 289 YYAKLIKIA 297


>gi|260426055|ref|ZP_05780034.1| Fmu [Citreicella sp. SE45]
 gi|260420547|gb|EEX13798.1| Fmu [Citreicella sp. SE45]
          Length = 384

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 126/454 (27%), Gaps = 82/454 (18%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   ++ +L  +          L      S F     +D+  VR  V   LR 
Sbjct: 1   MTP--AARIQAAAEILDRI-ASGTPAEQALLGWSRASRFAG--SKDRAAVRDHVFDVLRR 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                AV          R +  +  LLR         D  D   +      A        
Sbjct: 56  WRSTAAV------GGGERGRARMLGLLR--------QDGIDPDTLFTGEGHAPSPLSEDE 101

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A                 +   A    +P+W      +       +  ++A      + 
Sbjct: 102 RAAG--------------RVPEGAEALDMPDWLWPGF-SANLGAEAVPAAEALRHRAPVF 146

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE----------LPESIVSLPGFAEGVWWVQDAS 229
           L V     T      A+     G R                 I     F EG+  +QDA+
Sbjct: 147 LRVNTLRNTLDEAQAALATEGIGTRPHPLADTALEVIAGARGIARSAAFTEGLVELQDAA 206

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHL 288
           +   V          VLD CA  GGK   +         A D    R+  L     R   
Sbjct: 207 SQAVVAQLPLGPGQRVLDYCAGGGGKALAMAARLRGAVEAHDADPGRMSDLPARAARAGA 266

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                 +       P   +D VL D PCS +G+ RR P+  W    D + +    Q  +L
Sbjct: 267 EIVRTAK-------PSGRYDLVLCDVPCSGSGSWRRAPEGKWRLTEDGLTRLLSVQAGIL 319

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 V  GG + ++ CS+   ++   V+  L        +                  
Sbjct: 320 DTVAPLVADGGTLAYATCSMLAPENAAQVEGFLGRHAGWQVVT----------------- 362

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                +  P           G DGFF   L R  
Sbjct: 363 ---QRQFLP---------RDGGDGFFMACLTRTA 384


>gi|288932862|ref|YP_003436922.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
 gi|288895110|gb|ADC66647.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
          Length = 306

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 19/275 (6%)

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           + + VK  +E  + +     +P          E I   P FA G+ ++Q+AS+ IP  + 
Sbjct: 43  LKIDVKSVVERLSEEFELERVPWCKEGFFVYGEGITKTPEFALGLIFMQEASSMIPPVVM 102

Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
               NL VLD+ AAPG K    +Q + +   V A DV   RL  L  N+ +       + 
Sbjct: 103 DLKENLFVLDMAAAPGAKTTQISQYMNNTGCVIANDVKYSRLNILISNVQKYGCINVVVT 162

Query: 295 EMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           E D   +   +  FD VL+DAPCS+ G IR++   L      ++   +  Q+ L+L    
Sbjct: 163 EKDGRYFGRFRDTFDRVLLDAPCSNVGMIRKNYKYLKLWRQMEVEALSRLQKSLILAAYK 222

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE- 410
            +KP G++V+S C+LD +++EEV+  +L ++   +E +  P+ S            S E 
Sbjct: 223 ALKPKGVLVYSTCTLDPEENEEVIDYLLYNTDAKLEKIKLPVKSTEPILEFNGKRYSEEV 282

Query: 411 -GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
              +RI P          +  +GFF     ++++P
Sbjct: 283 KKCLRIHPQD--------NDTEGFFVA---KVVKP 306


>gi|126726573|ref|ZP_01742414.1| NOL1/NOP2/sun family protein [Rhodobacterales bacterium HTCC2150]
 gi|126704436|gb|EBA03528.1| NOL1/NOP2/sun family protein [Rhodobacterales bacterium HTCC2150]
          Length = 390

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 151/453 (33%), Gaps = 76/453 (16%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  +M     +   L        F      D+  +R I    LR 
Sbjct: 1   MTP--PARHAAAIQILDLIM-SGQDVEKALKDWARGHRFAG--SGDRAAIRDICFEVLRK 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              + A+       SL      +  LLR                 D   + +       +
Sbjct: 56  KRSVAALGSGETGRSL------VLGLLR-----------------DQQRDPSDIFTGATY 92

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
              ++      ++      +      +  P W    +    G +    +     +   + 
Sbjct: 93  APPVL--TDDELATGDDVGILAEDVAADCPAWLWPIVNKSLG-DECGDVFQILRNRAPLT 149

Query: 180 LTVKFDIETWAHKLNAVMLP----------TGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +       T    + A+                I L + P ++ +LP + EG+  +QD +
Sbjct: 150 MRANLRKSTRKQAMTALADHGINAVENPISPAAIDLPDYPRNLKNLPPYLEGLVELQDGA 209

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT-AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   V+L   L +  +LD CA  GGKT A         TA D   +R++ +    +R  +
Sbjct: 210 SQAIVELLPDLVDADILDFCAGGGGKTLAIAGKLSGTFTAHDAFVQRMKDIPARAERAGI 269

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             E +  +       ++ FD V  DAPCS +G+ RR P   W      +      QRK+L
Sbjct: 270 EVEILDAL----PDEERKFDLVFCDAPCSGSGSWRRDPAGKWNISPTSLTDVCDLQRKIL 325

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
           +Q   FV   G + ++ CS    ++ + V+  L + P                     L+
Sbjct: 326 VQAAEFVAADGYLAYATCSFLPDENTDQVKAFLEADP------------------KWRLT 367

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            E   +  P             DGF+   L+RL
Sbjct: 368 TEK--QFLPTPQ---------GDGFYIAILKRL 389


>gi|311109240|ref|YP_003982093.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310763929|gb|ADP19378.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
           xylosoxidans A8]
          Length = 445

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 178/441 (40%), Gaps = 47/441 (10%)

Query: 25  LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84
           +  +LD      A   +    +   +A+    +R+L   DAV   ++         SL  
Sbjct: 25  VEGVLDGRSLTDALSDVESALRPATQAVSFHAMRYLGWADAVGREMVQRYPSVLFESLLL 84

Query: 85  LLRV-------SVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
           +          + + +  + V A + VVD AV  A R +E   F  ++N+ LRR  RE+ 
Sbjct: 85  VSLTLLKEEGEAASALPGMPVYAPHTVVDQAVTAASRSRELASFKGMLNACLRRFLRERA 144

Query: 137 ELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
            L   +A         P W+ ++L   Y +E    ++ A +    + L V     +    
Sbjct: 145 ALEAAVADSPEAQWNHPGWWVKQLSVAYPREWREILAAANLPAP-LTLRVNRRRASREQV 203

Query: 193 LNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           L A                +   P+ +  LPGFAEG W VQDA A +  +L    + + V
Sbjct: 204 LAAFQAAGLAAEPVGQSGLVLATPKPVTQLPGFAEGWWSVQDAGAQLAAELLAPADGMRV 263

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE-KLRCNLDRLHLYAEDII-----EMDAF 299
           LD C+APGGKTA L+           +      ++  NLDRL L ++ +        D  
Sbjct: 264 LDACSAPGGKTAHLLELADIDLLALDADADRLVRVGQNLDRLGLASDRVQLKAADAADLD 323

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
            +   K FDAVL D PC+++G +RRHPD+ W R  +D+ ++A  Q  +L      V PGG
Sbjct: 324 AWWDGKPFDAVLADVPCTASGIVRRHPDIRWLRRENDVRRTATLQSSILDALWRTVAPGG 383

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +++  CS+   +      + ++  P    L                       ++ P  
Sbjct: 384 RLLYVTCSIFPIEGARQALEFMQRHPDAQRLEAPG-------------------QLLPVA 424

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           ++         DGFF     +
Sbjct: 425 VDATPAAQH--DGFFYALFAK 443


>gi|255535827|ref|YP_003096198.1| ribosomal RNA small subunit methyltransferase B [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342023|gb|ACU08136.1| ribosomal RNA small subunit methyltransferase B [Flavobacteriaceae
           bacterium 3519-10]
          Length = 401

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 156/441 (35%), Gaps = 70/441 (15%)

Query: 12  SHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L       R     +++     +        D+ +V  I    +R+  R++  +   
Sbjct: 13  HDALQETFFEDRKYADKVIERLLKANRKWG--SEDRKVVSQIFYDIIRWKKRLEYYMGEG 70

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +           + +L      +                     K+   F  + N+ +  
Sbjct: 71  VK-----PNNIYKLIL---TYCL---------------WTKTHYKKFEEFDGIKNAEILN 107

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIET 188
             ++     +  +    IPEW  E +E   G      ++        I    T+K   + 
Sbjct: 108 KLKKNTVPTK--SIEHSIPEWLAETMEKELGPTWEREMNALNEQAPTILRANTLKTTTKE 165

Query: 189 WAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L    + +  IR           +++     F +G++ VQDAS+    +L      
Sbjct: 166 LISDLKDENVESSTIRNYPDAVQLVEKKNVFLTSAFKDGLFEVQDASSQKIGELLDVQEG 225

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           + V+D CA  GGKT  L   +++  ++ ALD+   +L +L+    R   +  +   +D  
Sbjct: 226 MRVIDACAGAGGKTLHLAALMINKGQIIALDIYAWKLAELKRRAKRAGAHNIEARLIDDN 285

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
               +     D VL+DAPCS  G ++R+PD  W  D D I +    Q+++L      +K 
Sbjct: 286 KVIKRLHGTADRVLIDAPCSGLGVLKRNPDSKWKIDQDFIDRIKKEQQQILQDYSKMLKK 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V++ CS+   ++ E V   L+++                      +  E  +    
Sbjct: 346 GGKMVYATCSILPSENSEQVGIFLKNNEEF-----------------TLIREEKVM---- 384

Query: 418 DMLEKIDGVSSGMDGFFAVAL 438
                    S G DGF+   +
Sbjct: 385 --------PSDGFDGFYMALI 397


>gi|71404146|ref|XP_804805.1| nucleolar protein [Trypanosoma cruzi strain CL Brener]
 gi|70867957|gb|EAN82954.1| nucleolar protein, putative [Trypanosoma cruzi]
          Length = 328

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 9/242 (3%)

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260
           ++ E    I     +  G + +Q A + +PV          VLD+ AAPGGKT  +   +
Sbjct: 21  QVFESNVPIAGTIEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLM 80

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSST 319
            +   + A DVS+ R + L  NL RL +    +   D   Y      FD VL+DAPC+ +
Sbjct: 81  KNTGVLFANDVSEPRTKALNANLQRLGVTNTVVTNYDGAGYNKIMKNFDRVLLDAPCTGS 140

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G I R   +  ++  +D+ +++  QR LLL  I  VK GG VV+S CS   +++E VV+ 
Sbjct: 141 GIISRDKSIKSSKHYEDVQRASQQQRTLLLSAIDAVKVGGYVVYSTCSFLVEENEAVVEF 200

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            +R   + +  + L                E           +       MDGFF   L+
Sbjct: 201 AVRRRHVEIVEMGLPFGRPGLTKYRHHRFQEKM-----QCSRRFFPHVHNMDGFFVCKLK 255

Query: 440 RL 441
           +L
Sbjct: 256 KL 257


>gi|217974125|ref|YP_002358876.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS223]
 gi|217499260|gb|ACK47453.1| Fmu (Sun) domain protein [Shewanella baltica OS223]
          Length = 463

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 152/449 (33%), Gaps = 50/449 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L   +   ++    +L   + +        +D+ ++R  +    R+      + D    
Sbjct: 42  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQQ-E 98

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S++     +   LL     Q          + +   E ++   + +    L    L    
Sbjct: 99  SAVYFASLNASALLEAHAWQ---------DIANAWHELSQSPIDYQQAQALAVESLDDKL 149

Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188
                L       +   +P+WF +       ++  L  + +   P++         D  T
Sbjct: 150 ALIQHLFPATEFKAQDLLPDWFWQVCPVDAAQQTQLIAAMSSRPPIWGRAQGITSQDAAT 209

Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
               L               L     ++  +  + +G   +QD ++ +  Q+     +  
Sbjct: 210 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAH 269

Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             D C+  GGKT                 S   + + D+    LE+L     R H     
Sbjct: 270 WWDACSGAGGKTLQLRSLMLAKAADNQTSSAGSIISSDIRSNALEELTKRAQRAHFNGIS 329

Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +    +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L + 
Sbjct: 330 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 389

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VK GGI+V++ CSL   ++++VV   L+  P    L P+   +              
Sbjct: 390 CRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 440

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + + P          +  DG F   + R
Sbjct: 441 MLTVWP--------FEANSDGMFVARMLR 461


>gi|327355493|gb|EGE84350.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ATCC
           18188]
          Length = 692

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 36/370 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + +   +    + +   + ++  A   N ++  +                   +
Sbjct: 213 QLLRSRITETIRI--LGDLSTLGRPSKSRADYTNLLISDICTY-----------YGYTPY 259

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
             E+L N +      A  +A  SP  + +    ++ +  + A  L    +    +     
Sbjct: 260 LAEKLFNLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 319

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                      + + P +  G + +Q AS+ +PV       N  VLD+ AAPGGKT  + 
Sbjct: 320 VGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYIS 379

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
             + +   V A D SK R + L  N+ RL      +  +DA +  PK    FD +L+DAP
Sbjct: 380 ALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIVSNLDAREAFPKILGGFDRILLDAP 439

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P +  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 440 CSGTGVISKDPSIKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVE 499

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + S      +  +   +  P +  +       +D
Sbjct: 500 ENEGVVQYALRKRPN-VKIVDTGLGNFGSPGFKSYMGKKFDDK-MP-LTRRYYPHRENVD 556

Query: 432 GFFAVALRRL 441
           GF+   L+++
Sbjct: 557 GFYVCKLKKM 566


>gi|261200155|ref|XP_002626478.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239593550|gb|EEQ76131.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239607570|gb|EEQ84557.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 654

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 36/370 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   + +   +    + +   + ++  A   N ++  +                   +
Sbjct: 213 QLLRSRITETIRI--LGDLSTLGRPSKSRADYTNLLISDICTY-----------YGYTPY 259

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
             E+L N +      A  +A  SP  + +    ++ +  + A  L    +    +     
Sbjct: 260 LAEKLFNLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 319

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                      + + P +  G + +Q AS+ +PV       N  VLD+ AAPGGKT  + 
Sbjct: 320 VGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYIS 379

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
             + +   V A D SK R + L  N+ RL      +  +DA +  PK    FD +L+DAP
Sbjct: 380 ALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIVSNLDAREAFPKILGGFDRILLDAP 439

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P +  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 440 CSGTGVISKDPSIKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVE 499

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + S      +  +   +  P +  +       +D
Sbjct: 500 ENEGVVQYALRKRPN-VKIVDTGLGNFGSPGFKSYMGKKFDDK-MP-LTRRYYPHRENVD 556

Query: 432 GFFAVALRRL 441
           GF+   L+++
Sbjct: 557 GFYVCKLKKM 566


>gi|218191489|gb|EEC73916.1| hypothetical protein OsI_08757 [Oryza sativa Indica Group]
          Length = 695

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 125/325 (38%), Gaps = 40/325 (12%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                ++  E     +    ++ + ++        L            A  L        
Sbjct: 229 YYGYNDFLVEAFIEMFPAVELVELLESFEKKPPECLRTNTLKTRRRDLAAALIPRGFNLD 288

Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I        +         +   +  G +  Q AS+ +PV          ++D+ AAPG
Sbjct: 289 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 348

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A + +++RL  L  N+ R+ +    +   D  +          
Sbjct: 349 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 408

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TGTI + P +  ++  +DI   A  Q++LLL  I  V    K GG +V+
Sbjct: 409 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLSAIDLVDANSKTGGYIVY 468

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML--- 420
           S CSL   ++E VV   L+     V+LVP    + +           G+IR         
Sbjct: 469 STCSLMIPENEAVVDYALKKR--NVKLVPCGLDFGRP----------GFIRFREHRFDTS 516

Query: 421 ----EKIDGVSSGMDGFFAVALRRL 441
                +     + MDGFF   L++L
Sbjct: 517 LDKTRRFYPHVNNMDGFFVAKLKKL 541


>gi|13435750|gb|AAH04733.1| Nop2 protein [Mus musculus]
          Length = 432

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 21/224 (9%)

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  +  +LD+C APGGKT+ +   + +   + A D +  RL+ +  NL RL +   
Sbjct: 1   MALAPQEHERILDMCCAPGGKTSYIAQLMENTGVILANDANADRLKSVVGNLHRLGVTNT 60

Query: 292 DIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            I   D   +      FD VL+DAPCS TG I + P V   +D  DI + A  Q++LLL 
Sbjct: 61  IISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLS 120

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG +V+  CS+  +++E VV   L+     V LVP    + +       
Sbjct: 121 AIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EG 173

Query: 407 LSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR----LIQP 444
            +     R  P +    +    +  MDGFF    ++    + QP
Sbjct: 174 FTRFQARRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQP 217


>gi|67619571|ref|XP_667654.1| nucleolar protein-like [Cryptosporidium hominis TU502]
 gi|54658807|gb|EAL37423.1| nucleolar protein-like [Cryptosporidium hominis]
          Length = 542

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 138/339 (40%), Gaps = 29/339 (8%)

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL---T 181
           NS     S    +L   I+ +          + N +  +  L   +A  +   + +    
Sbjct: 107 NSKKASRSELMDKLADDISILYGYNTELTNYILNLFSPKEALDFFEANENKRPLTIRTNM 166

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIP 233
           +K      A KL +                        I + P +  G + +Q AS+ IP
Sbjct: 167 LKSRRRDLAQKLISRGANVDPTGEWTKVGLTIYSSSVPIGATPEYLAGHYMIQSASSLIP 226

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
           V          +LD+ AAPGGKT  +   + +   + A D+ K R   L  NL R+ +  
Sbjct: 227 VMALAPQPGEKILDMAAAPGGKTTYIGQLMKNSGILYANDLRKDRCTGLIANLHRMGINN 286

Query: 291 EDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             ++ MD  +        D VL+DAPC+  G I R P V   R   ++ + +  Q++LL 
Sbjct: 287 SIVVNMDGKELGSFLPKLDRVLLDAPCTGLGIIARDPSVKVKRSIKELAQHSLLQKELLK 346

Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
             +  V    K GG +V+S CS+  +++E VV  +LR+    V+LVPL          + 
Sbjct: 347 AAVDMVDANSKTGGYIVYSTCSISIEENEMVVDYILRTR--HVKLVPLGVEIG-----SN 399

Query: 406 ALSPEGWIRITP---DMLEKIDGVSSGMDGFFAVALRRL 441
            +S     R  P       +I    + MDGFF   L+++
Sbjct: 400 GISKFREHRFNPTISTYTRRIYPHLNNMDGFFVAKLKKI 438


>gi|157375527|ref|YP_001474127.1| Fmu (Sun) domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157317901|gb|ABV36999.1| Fmu (Sun) domain protein [Shewanella sediminis HAW-EB3]
          Length = 419

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 141/449 (31%), Gaps = 70/449 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L  V+ +   L     + +       L+  +Q  +  +    LR L        
Sbjct: 27  ELVISVLDMVLSEGKPLDRAYSVHFS---GLQLAPSEQARITKVAGDILRRLNLYCF--- 80

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +                R+         +  + +                    +  + 
Sbjct: 81  -LSDVKPEEMS-------RLGT-----RLINAWHLFHELE--------LPKLQYSLPLVE 119

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185
                   E  ++ A     PEW  E  ++  G+        A  +     +        
Sbjct: 120 AEYFARLEEAKKQPALWDGCPEWLDEMGQSQLGEAWAK-ERAALNTQPKRFIRTNLLKCT 178

Query: 186 IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            E  A KL    + T  +   +         ++     F +G +  QDA + +       
Sbjct: 179 REELAKKLRNEQVQTQEVEGVDTALEVTSDSALFRTESFKKGWFEQQDAGSQLVAAAVDA 238

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DII 294
              + V+D CA  GGK    A  +    ++ A+DV + +L+ L+    R +       II
Sbjct: 239 KPGMRVIDACAGAGGKTLSIASQMKGKGRLLAMDVEQWKLDSLKQRARRANADNIETRII 298

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                    K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      
Sbjct: 299 ASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRM 358

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GG++V++ CS+  +++   V   L  +     +                        
Sbjct: 359 VKVGGMLVYATCSIMPEENRNQVDAFLAENDHFKFIED---------------------- 396

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                 E I    SG DGF+   L R+ +
Sbjct: 397 ------ETISVADSGFDGFYLAKLERIAE 419


>gi|255261330|ref|ZP_05340672.1| Fmu [Thalassiobium sp. R2A62]
 gi|255103665|gb|EET46339.1| Fmu [Thalassiobium sp. R2A62]
          Length = 391

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 139/450 (30%), Gaps = 73/450 (16%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +   L  ++        +L        F     +D+  +R  V   LR 
Sbjct: 1   MTPS--ARVAAAIECLDAILVGGA-AEKVLTTWARTHRFAG--SKDRAAIRDHVFGALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                A+        +            +       LD       D       +      
Sbjct: 56  RRSYAAIGGAETGRGI-----------MIGAC----LDT----GGDSDAWFDGKGYGAAI 96

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--- 176
             +     +   + +        +    + +W  E+ +   G +                
Sbjct: 97  LTQDEQDGIGTFASQDR------SVQMDVQDWMVEQFDTSLGAQATDIALKLRERAPVFV 150

Query: 177 --YIDLTVKFDIETWAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASA 230
              + L    D        +  ++    +     + + P  +     +  G+  +QDA++
Sbjct: 151 RVNLRLGTVDDAVVQLGLDDIEVVRHPDVATALEVTKNPRRVQLSSAYLGGLIELQDAAS 210

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              V          +LD CA  GGK  A   ++ A++ A D +  R++ L    DR    
Sbjct: 211 QAVVAAIPLPEQGRILDYCAGGGGKSLAMAALTKAEIFAHDSAPERMKDLWTRADRAG-- 268

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +I   D  +      F+ VL DAPCS +G  RR P   W    +D+      Q  +L 
Sbjct: 269 -VNIANFDTNNAPQGADFNVVLCDAPCSGSGAWRRAPAGKWAFTPEDLSAFCQTQAGILD 327

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
               +V PGG++ ++ CSL   ++ + V   L  +P                      + 
Sbjct: 328 DAKKWVMPGGLLAYATCSLFAVENADQVDAFLGKNPSW--------------------TC 367

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           E  I+ TP             DGFF   LR
Sbjct: 368 ESQIQFTP---------LDHGDGFFVALLR 388


>gi|226290863|gb|EEH46291.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb18]
          Length = 660

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 151/369 (40%), Gaps = 36/369 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   +     + +  + +   +  +  A   N +L  +                   +
Sbjct: 227 QLLRSRI--MESIRILSDLSTLGQTGKSRADYTNLLLADICTY-----------YGYTPF 273

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
             E+L N +      A  +A  SP  + +    ++ +  + A  L    +    +     
Sbjct: 274 LAEKLFNLFPPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 333

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                      + + P +  G + +Q AS+ +PV       N  +LD+ AAPGGKT  + 
Sbjct: 334 VGLQVFESSVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGKTTYIS 393

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315
             + +   V A D SK R + L  N+ RL      +  +DA +  PK    FD +L+DAP
Sbjct: 394 ALMRNTGCVLANDASKHRAKGLIGNIHRLGCKNTIVSHLDAGEAFPKILGGFDRILLDAP 453

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +
Sbjct: 454 CSGTGVISKDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVE 513

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VVQ  LR  P  V++V      + +      +  +   ++   +  +       +D
Sbjct: 514 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMGKKFDEKM--ALTRRYYPHRENVD 570

Query: 432 GFFAVALRR 440
           GF+   L++
Sbjct: 571 GFYVCKLKK 579


>gi|126173630|ref|YP_001049779.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS155]
 gi|125996835|gb|ABN60910.1| Fmu (Sun) domain protein [Shewanella baltica OS155]
          Length = 453

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 151/449 (33%), Gaps = 50/449 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L   +   ++    +L   + +        +D+ ++R  +    R+      + D    
Sbjct: 32  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQQ-E 88

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           S++     S   LL     Q          +     E ++   + +    L    L    
Sbjct: 89  SAIYFASLSASALLEAHAWQ---------DIASAWHELSQSPIDYQQAQALAVESLDDKL 139

Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188
                L       +   +P+WF +       ++  L  + +   P++         D  T
Sbjct: 140 ALIQHLFPATEFKAQDLLPDWFWQVCPVDTAQQTQLIAAMSSRPPIWGRAQGITSQDAAT 199

Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
               L               L     ++  +  + +G   +QD ++ +  Q+     +  
Sbjct: 200 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAH 259

Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             D C+  GGKT                 S   + + D+    LE+L     R H     
Sbjct: 260 WWDACSGAGGKTLQLRSLMLAKAADNQTSSAGSIISSDIRSNALEELMKRAQRAHFNGIS 319

Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +    +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L + 
Sbjct: 320 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 379

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VK GGI+V++ CSL   ++++VV   L+  P    L P+   +              
Sbjct: 380 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 430

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + + P          +  DG F   + R
Sbjct: 431 MLTVWP--------FEANSDGMFVARMLR 451


>gi|66475704|ref|XP_627668.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa
           II]
 gi|32398900|emb|CAD98365.1| nucleolar protein-like, probable [Cryptosporidium parvum]
 gi|46229100|gb|EAK89949.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa
           II]
 gi|323508963|dbj|BAJ77374.1| cgd6_3230 [Cryptosporidium parvum]
          Length = 542

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 83/339 (24%), Positives = 138/339 (40%), Gaps = 29/339 (8%)

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL---T 181
           NS     S    +L   I+ +          + N +  +  L   +A  +   + +    
Sbjct: 107 NSKKASRSELMDKLADDISILYGYNTELTNYILNLFSPKEALDFFEANENKRPLTIRTNM 166

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIP 233
           +K      A KL +                        I + P +  G + +Q AS+ IP
Sbjct: 167 LKSRRRDLAQKLISRGANVDPTGEWTKVGLTIYSSSVPIGATPEYLAGHYMIQSASSLIP 226

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
           V          +LD+ AAPGGKT  +   + +   + A D+ K R   L  NL R+ +  
Sbjct: 227 VMALAPQPGEKILDMAAAPGGKTTYIGQLMKNSGILYANDLRKDRCTGLIANLHRMGINN 286

Query: 291 EDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             ++ MD  +        D VL+DAPC+  G I R P V   R   ++ + +  Q++LL 
Sbjct: 287 SIVVNMDGKELGSFLPKLDRVLLDAPCTGLGIIARDPSVKVKRSIKELAQHSLLQKELLK 346

Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
             +  V    K GG +V+S CS+  +++E V+  +LR+    V+LVPL          + 
Sbjct: 347 AAVDMVDANSKTGGYIVYSTCSISIEENEMVIDYILRTR--HVKLVPLGVEIG-----SN 399

Query: 406 ALSPEGWIRITP---DMLEKIDGVSSGMDGFFAVALRRL 441
            +S     R  P       +I    + MDGFF   L+++
Sbjct: 400 GISKFREHRFNPTISTYTRRIYPHLNNMDGFFVAKLKKI 438


>gi|219112587|ref|XP_002178045.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410930|gb|EEC50859.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 528

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 144/394 (36%), Gaps = 38/394 (9%)

Query: 76  PRKKYSLQQLLRVSVAQI-----LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              + +++  L  SV  +     L  DV             +   E     K      R 
Sbjct: 140 EEMRRTVR--LHTSVYHLPTTEELQRDVDRVVPPSEIRSHIESILEVLADFKTRREPGRA 197

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187
                 +L   +A I        E     +G    +   +A      + +         +
Sbjct: 198 RKEYIDQLGLFLAEIQGYLPELIEYFLTMFGPAETVEFVNASDKTRPLVIRANTLKTRRK 257

Query: 188 TWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
             A  L                G+++ E P  I + P +  G++ +Q A++  PV     
Sbjct: 258 DLAAALMKRGVTLDPLANWSKVGLKIMESPVPIGATPEYLSGMYMLQSAASMCPVLALAP 317

Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                VLD+ AAPGGKT+ +   + +   + A D+   R +    N+ RL +        
Sbjct: 318 EPKERVLDMSAAPGGKTSYIAQLMRNTGTIVANDLKPERQKATVANMHRLGVKNVIACAH 377

Query: 297 DAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           D        K  FD +L+DAPCS  G I R P V   R   D+ + A  Q++LLL  I  
Sbjct: 378 DGRKMGVMFKNRFDRILLDAPCSGLGVISRDPSVKVQRTIADVNQCAHLQKELLLAAIDA 437

Query: 355 VKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSIDMAMAL 407
           +K     GG +V+S CS+   ++EEVV   L    I +    L+     + + +      
Sbjct: 438 LKSKGTSGGFMVYSTCSVAVAENEEVVNYALSKRDIKIVDTGLDFGKPGFTRYMQKRFHS 497

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           S     R  P +          MDGFF   +++L
Sbjct: 498 SVALTRRFYPHV--------HNMDGFFVCKIQKL 523


>gi|3288669|dbj|BAA31227.1| Fmv [Vibrio alginolyticus]
          Length = 225

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 116/237 (48%), Gaps = 26/237 (10%)

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAK 265
            P  ++ LPGF +G   VQDA+A + +      +   +LD CAAPGGKTA      SG++
Sbjct: 8   APCDVMKLPGFDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSE 67

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
           V A+D    RL+++  NL RL+L A        +  ++   + FD +L+DAPCS+TG IR
Sbjct: 68  VVAIDCDDTRLKRVHENLKRLNLQAKVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIR 127

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           RHPD+ W R  DDI   A  Q ++     + +KPGG +V++ CS+  Q++ E V+  L  
Sbjct: 128 RHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLAR 187

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +     L        +              +I P            MDGF+   L +
Sbjct: 188 TADAQLLDSDPDQPGR--------------QILPG--------EEDMDGFYYAVLTK 222


>gi|152970898|ref|YP_001336007.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955747|gb|ABR77777.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 462

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 126/264 (47%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +  +L  V     G  ++   +    + S      G++++Q+AS+ +PV           
Sbjct: 45  YGWQLAPVPWCAEGFWIEREDDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNRQPE 104

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 105 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 164

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+  D L     +  +  A  QR+L+      ++PG
Sbjct: 165 FGAALPETFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 224

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++ V++ +L   P  VE++PL   +  + D   AL+ EG++ + P 
Sbjct: 225 GTLVYSTCTLNREENQSVIEWLLSRYPQAVEILPLGELFPGAAD---ALTAEGFLHVFPQ 281

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 282 IYDCE--------GFFVARLRKTA 297


>gi|238895411|ref|YP_002920146.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330001320|ref|ZP_08303939.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella sp. MS
           92-3]
 gi|257096809|sp|A6TB06|RSMF_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|238547728|dbj|BAH64079.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537743|gb|EGF63946.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella sp. MS
           92-3]
          Length = 477

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 126/264 (47%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +  +L  V     G  ++   +    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWQLAPVPWCAEGFWIEREDDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNRQPE 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+  D L     +  +  A  QR+L+      ++PG
Sbjct: 180 FGAALPETFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++ V++ +L   P  VE++PL   +  + D   AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENQSVIEWLLSRYPQAVEILPLGELFPGAAD---ALTAEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 297 IYDCE--------GFFVARLRKTA 312


>gi|261327715|emb|CBH10692.1| nucleolar protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 579

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 125/314 (39%), Gaps = 26/314 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195
               E+  + +   +     +   +A   P    + V          + A          
Sbjct: 204 YGYNEFLTDSILLLFSPTEAVEFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEP 263

Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++ E    I     +  G + +Q A + +PV       N  VLD+ AAPGG
Sbjct: 264 LEKWSKVGLQVFESNVPISGTVEYLAGHYMLQSAVSFLPVMALAPQINERVLDMAAAPGG 323

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310
           KT  +   + +   + A DVS+ R + L  NL RL +    +   D   +      FD +
Sbjct: 324 KTTYIAQLMKNTGVIFANDVSEPRTKSLNANLQRLGVTNTVVTNYDGVGFEKVMKNFDRI 383

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPC+ +G I R   +  ++  +D+ +++  QR LLL  I  V+ GG +V+S CS   
Sbjct: 384 LLDAPCTGSGIISRDKSIKTSKQYEDVQRASQLQRSLLLSAIDAVRVGGYIVYSTCSFLV 443

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVS 427
           +++E VV  VL    + +    L                +      R+ P +        
Sbjct: 444 EENEAVVDFVLHRRDVAIVEAGLPFGRPGLTKYRHHRFHDKLQNARRLFPHV-------- 495

Query: 428 SGMDGFFAVALRRL 441
             MDGFF   L++L
Sbjct: 496 HNMDGFFVCKLKKL 509


>gi|331226503|ref|XP_003325921.1| Yna1p [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309304911|gb|EFP81502.1| Yna1p [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 601

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 28/257 (10%)

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260
           ++ E    I + P +  G + +Q AS+ +PV           LD+ AAPGGKT  +   +
Sbjct: 229 QVFESSVPIGATPEYLAGHYMLQAASSFLPVIALDPQPGEKCLDMSAAPGGKTTFMSAMM 288

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319
            +  K+ A D SK R + L  N+ R+  +   I   DA D+      F+ VL+DAPCS T
Sbjct: 289 KNTGKLFANDSSKARCKSLMANVSRMGCHNVIISNHDARDFPKVMGGFNRVLLDAPCSGT 348

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIVVFSNCSLDKQDSEE 375
           G I +   V   +   D++  +  Q++L+L  I  V P    GG +V+S CS+  +++E 
Sbjct: 349 GVISKDASVKNNKSEKDLLLLSHLQKQLILSAIDSVSPHSTNGGYLVYSTCSVTVEENES 408

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT-----PD--MLEKIDGVSS 428
           VV   L+  P             K ++  +    EG++R       P   M  +      
Sbjct: 409 VVDYALKKRPN-----------VKLVETGIGFGKEGFVRFRGKIFNPSLKMTRRFYPHVH 457

Query: 429 GMDGFFAVALRRLIQPK 445
            +DGFF   L+  + PK
Sbjct: 458 NVDGFFVAKLK--VNPK 472


>gi|160874533|ref|YP_001553849.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS195]
 gi|160860055|gb|ABX48589.1| Fmu (Sun) domain protein [Shewanella baltica OS195]
          Length = 453

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 153/449 (34%), Gaps = 50/449 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L   +   ++    +L   + +        +D+ ++R  +    R+      + D    
Sbjct: 32  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQ--- 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
               ++       L  S   +L        + +   E ++   + +    L    L    
Sbjct: 87  ----QESAVYFASLSASA--LLEAHT-WQDIANAWHELSQTPIDYQQAQALAVESLDDKL 139

Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188
                L       +   +P+WF +       ++  L  + +C  P++         D  T
Sbjct: 140 ALIQYLFPATEFKAQDLLPDWFWQVCPVDAAQQTQLIAAMSCRPPIWGRAQGITSQDAAT 199

Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
               L               L     ++  +  + +G   +QD ++ +  Q+     +  
Sbjct: 200 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAH 259

Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
             D C+  GGKT                +S   + + D+    LE+L     R +     
Sbjct: 260 WWDACSGAGGKTLQLRSLMLAKAADNQTLSAGSIISSDIRSNALEELTKRAQRANFNGIS 319

Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +    +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L + 
Sbjct: 320 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 379

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              VK GGI+V++ CSL   ++++VV   L+  P    L P+   +              
Sbjct: 380 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 430

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + + P          +  DG F   + R
Sbjct: 431 MLTVLP--------FEANSDGMFVARMLR 451


>gi|114047702|ref|YP_738252.1| Fmu (Sun) domain-containing protein [Shewanella sp. MR-7]
 gi|113889144|gb|ABI43195.1| Fmu (Sun) domain protein [Shewanella sp. MR-7]
          Length = 404

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 143/448 (31%), Gaps = 72/448 (16%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +  +    LR L        
Sbjct: 12  ELVISILAMVLSEGKPLDRAYSQHFSGLK---LVPAEQARIATVTGDILRRLNLYCF--- 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +        +    +LL V    + + L++                         +   
Sbjct: 66  -LAEIKPEEMERLGSKLLNV--WHLFHKLELPKMQ-------------------YSLPVD 103

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
             R++    +   +       PEW     +   G         A  +P    L V     
Sbjct: 104 ADRLAERIEQAQNQPVLWDGCPEWLDTMGQAQLGTSW-EKERAALSTPPKRFLRVNGLKV 162

Query: 185 DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             +  A KL A  + T  +   +         ++     F +G++  QDA +        
Sbjct: 163 SRDELAQKLAAEFVTTQAVEGVDSALEVTSDSALFRTDCFKDGLFEQQDAGSQRVAAALD 222

Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII- 294
               + V+D CA  GGKT      +    ++ A+DV + +L+ L+    R   +  +   
Sbjct: 223 AKPGMRVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRL 282

Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                     K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L     
Sbjct: 283 IVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILSSYSR 342

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VK GGIVV++ CS+   ++   V   L  +P    L                       
Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLED--------------------- 381

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  E I    SG DGF+   L R+
Sbjct: 382 -------ETISPADSGFDGFYLAKLERI 402


>gi|303326115|ref|ZP_07356558.1| sun protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864031|gb|EFL86962.1| sun protein [Desulfovibrio sp. 3_1_syn3]
          Length = 464

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/414 (21%), Positives = 149/414 (35%), Gaps = 45/414 (10%)

Query: 20  RKRISLTCLLDLEYGDSAFRL------LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
              +S    L                 L Q+++ L   +V   LR   RI  +L  VL  
Sbjct: 30  DSGLSAQEALADALSGPLGEGGKAVAVLPQQERHLCSELVYGCLRAEIRIAYLLGRVLPK 89

Query: 74  SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
              R    L+ +L ++V  +L+   V D+A V  AV QA+R    R  A++ N  LR + 
Sbjct: 90  P-ERLPLPLRHILELAVYALLFQERVPDHAAVHSAVAQAERLFG-RSLARVTNGALRSIQ 147

Query: 133 REKI-----------------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
           R                    +    +     +P W  +   + YG+E  L +     + 
Sbjct: 148 RFGTAVDTREFYVVGKEGALADEWGGLCRYYSLPRWLGDLWHDAYGREAALCLMRRSFAR 207

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGF-----------A 219
            +  + V    E     L  +                +  +   LP             +
Sbjct: 208 PWSGVRVNARHEAAEELLAGLRHCAKEGCGEAVGRWGVAFAPGELPAHVLGQSLSLWRAS 267

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEK 278
             +      S      L     +  V D CA  GGK+  L+  G  VT   D S  RL  
Sbjct: 268 GALSLQSAGSQLAVQALELDCWDAPVWDACAGFGGKSFALLEQGIDVTLCTDRSWSRLRH 327

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW--TRDTDD 336
           L      LHL    +   DA     +     +L+DAPCS  G + R PD+     R   D
Sbjct: 328 LPGVCRELHLPRPAVCLADACAPPLRGWNGHILLDAPCSGLGVLARRPDIRKDSRRTPAD 387

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           + + A  Q ++LL+  + ++ G  + +  C+L+  ++E  V ++L +    + L
Sbjct: 388 LKQLAALQDRMLLRLSALLQQGRELAYITCTLNPTENELAVARLLAARSELMLL 441


>gi|319425708|gb|ADV53782.1| Fmu (Sun) domain protein [Shewanella putrefaciens 200]
          Length = 463

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 155/447 (34%), Gaps = 46/447 (10%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            L   +   ++    +L   + +        +D+ ++R  +    R+      + +    
Sbjct: 42  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRIGEQQAS 99

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           ++      S   LL     Q       D A     + Q+  D +      + +   +   
Sbjct: 100 ATYFA-NLSASALLEAHAWQ-------DIATAWHELSQSPIDYQLAQALAVDSLDDKLTL 151

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
            + +    ++    ++P+WF +       ++  L    +   P++         +     
Sbjct: 152 MQHLFPAAKLKPQDLLPDWFWQVCPVDAAQQTQLIEVMSSRPPIWGRAQGITSQDAATQL 211

Query: 193 LNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
               +  + G    +         ++  +  + +G   +QD ++ +  Q+     +    
Sbjct: 212 QALDIDASYGHYFNDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAHWW 271

Query: 247 DLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           D C+  GGKT                 S   + + D+    LE+L     R H     + 
Sbjct: 272 DACSGAGGKTLQLRSLMLAKAADNQTPSAGSIISSDIRSNALEELTKRAQRAHFNNISVA 331

Query: 295 EMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L +   
Sbjct: 332 RWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRSSR 391

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VK GG++V++ CSL   ++++VV   L+  P    L P+   +               +
Sbjct: 392 AVKAGGVLVYATCSLSPLENQDVVTAFLQQHP-EFMLTPIRHPFTGEQTE--------ML 442

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
            + P          +  DG F   + R
Sbjct: 443 TVWP--------FEANSDGMFVARMLR 461


>gi|170726563|ref|YP_001760589.1| Fmu (Sun) domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169811910|gb|ACA86494.1| Fmu (Sun) domain protein [Shewanella woodyi ATCC 51908]
          Length = 404

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 139/449 (30%), Gaps = 70/449 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L  V+ +   L     + +       L   +Q  +  +V   LR L        
Sbjct: 12  ELVISILDMVLSEGKPLDRAYSVHFS---GLQLIPSEQARITKVVGDILRRLNLYCF--- 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +                 ++   + + L++                         +   
Sbjct: 66  -LSDVKPEEISR--LGSRLMNAWHLFHELELP-------------------KLQYSLPLA 103

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFD 185
                    E   + A     PEW     +   G+      +     P        +K  
Sbjct: 104 EAEYFARLEEAKLQPALWDGCPEWLDTMGQAQLGEAWAKERAALNTQPKRFIRTNILKCT 163

Query: 186 IETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            E  A KL    + T                ++     F +G +  QDA + +       
Sbjct: 164 REELAKKLRNEQVQTTEVDGVDTALEVVSDSALFRTESFKKGWFEQQDAGSQLVAAAVDA 223

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DII 294
              + V+D CA  GGK    A  +    ++ A+DV + +L+ L+    R +       II
Sbjct: 224 KPGMRVIDACAGAGGKTLSIAAQMKGKGRLLAMDVEQWKLDNLKQRARRANASNVETRII 283

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                    K   D +L+D PCS  G ++R+PD  W    D +      Q+ +L      
Sbjct: 284 ASSKTIKRLKLSADRLLLDVPCSGLGVLKRNPDAKWRDTPDRLPVLVELQKHILQSYSRM 343

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GGI++++ CS+  +++ + V   L  +     L                        
Sbjct: 344 VKVGGILIYATCSIMPEENRDQVDAFLAENEHFTFLED---------------------- 381

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                 E I    SG DGF+   L R+ +
Sbjct: 382 ------ETISVADSGFDGFYMARLERIAE 404


>gi|197120707|ref|YP_002132658.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. K]
 gi|196170556|gb|ACG71529.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. K]
          Length = 436

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 104/451 (23%), Positives = 160/451 (35%), Gaps = 50/451 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +   V  +       L+          L   ++  V   V   LR   ++D +L 
Sbjct: 18  ALVLEVHGLVHDQGWLADRALERVLRRER--ALWANERRAVAEAVYGILRAQGQLDFLLG 75

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                S P        L+R              A V  A   A+     R  A L  +  
Sbjct: 76  ----GSPPLATRYAAWLVR-------------SAGVAPAQAAARLGAAPRALAGLAEADA 118

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK----- 183
           R       + L R A  + +P W  ERL +  G+    A++        + +        
Sbjct: 119 R--IAAIPDPLDRFAVEASLPRWIAERLVSELGEAEARALAAVLNRRAPLTVRANALAGD 176

Query: 184 ---FDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                    A  + A         L  +  ++  +L  F  G + +QD  + +     G 
Sbjct: 177 REALRAALAAEGVPAEPTHFSPWGLTLDGHQNAFALEAFRTGGFEIQDEGSQLIALACGA 236

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--- 293
                V+D CA  GGK    A  + +   + ALD    RLE  R    R H++       
Sbjct: 237 RPGQVVVDACAGAGGKSLALAAEMHNKGSLHALDSDAGRLEDARRRARRAHVHNLRTRVV 296

Query: 294 ---IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
               E +A         D VLVDAPCS  GT+RR PD  W     D  + A  QR+LL +
Sbjct: 297 PAGPEAEAAVADLAGKADVVLVDAPCSGLGTLRRKPDARWRLQPGDPERFAAIQRELLGR 356

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
                +PGG VV++ C++ + +++E V          + L P   A +   + A AL   
Sbjct: 357 FARLARPGGRVVYATCAMGRTENDE-VADFAER---ELGLAPAPLAPFLGAERARALGA- 411

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G  R        +     G DGFF  A R++
Sbjct: 412 GESRC------ALYPHRHGTDGFFFAAFRKV 436


>gi|72388220|ref|XP_844534.1| nucleolar protein [Trypanosoma brucei TREU927]
 gi|62359769|gb|AAX80199.1| nucleolar protein, putative [Trypanosoma brucei]
 gi|70801067|gb|AAZ10975.1| nucleolar protein, putative [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
          Length = 525

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 125/314 (39%), Gaps = 26/314 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195
               E+  + +   +     +   +A   P    + V          + A          
Sbjct: 150 YGYNEFLTDSILLLFSPTEAVEFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEP 209

Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++ E    I     +  G + +Q A + +PV       N  VLD+ AAPGG
Sbjct: 210 LEKWSKVGLQVFESNVPISGTVEYLAGHYMLQSAVSFLPVMALAPQINERVLDMAAAPGG 269

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310
           KT  +   + +   + A DVS+ R + L  NL RL +    +   D   +      FD +
Sbjct: 270 KTTYIAQLMKNTGVIFANDVSEPRTKSLNANLQRLGVTNTVVTNYDGVGFEKVMKNFDRI 329

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPC+ +G I R   +  ++  +D+ +++  QR LLL  I  V+ GG +V+S CS   
Sbjct: 330 LLDAPCTGSGIISRDKSIKTSKQYEDVQRASQLQRSLLLSAIDAVRVGGYIVYSTCSFLV 389

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVS 427
           +++E VV  VL    + +    L                +      R+ P +        
Sbjct: 390 EENEAVVDFVLHRRDVAIVETGLPFGRPGLTKYRHHRFHDKLQNARRLFPHV-------- 441

Query: 428 SGMDGFFAVALRRL 441
             MDGFF   L++L
Sbjct: 442 HNMDGFFVCKLKKL 455


>gi|22328952|ref|NP_194390.2| nucleolar protein, putative [Arabidopsis thaliana]
 gi|17979390|gb|AAL49920.1| unknown protein [Arabidopsis thaliana]
 gi|22136852|gb|AAM91770.1| unknown protein [Arabidopsis thaliana]
 gi|332659825|gb|AEE85225.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana]
          Length = 671

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           + +    I + P +  G + +Q AS+ +PV          V+D+ AAPGGKT  +   + 
Sbjct: 306 VYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMK 365

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318
           +   + A ++   RL+ L  NL R+ +    +   D  +      +   D VL+DAPCS 
Sbjct: 366 NTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRELTKVLGQSSVDRVLLDAPCSG 425

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374
           TG I +   V  ++  DDI K A  Q++L+L  I  V    K GG +V+S CS+   ++E
Sbjct: 426 TGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVMIPENE 485

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDG 432
            V+   L++    V+LVP    + +        S     R  P +    +       MDG
Sbjct: 486 AVIDYALKNR--DVKLVPCGLDFGRP-----GFSSFREHRFHPSLEKTRRFYPHVHNMDG 538

Query: 433 FFAVALRRL 441
           FF   L+++
Sbjct: 539 FFVAKLKKM 547


>gi|300121088|emb|CBK21470.2| unnamed protein product [Blastocystis hominis]
          Length = 690

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 127/333 (38%), Gaps = 28/333 (8%)

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186
                   L    A          E     +  +  +   DA  S   + +         
Sbjct: 156 SREEYMDRLRSYCARFYGYNPNLVEYFFYMFSPQECVEWFDANESDRPLVIRTNTLKTRR 215

Query: 187 ETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
              A  L    +    +        ++ + P  I + P +  G + +Q AS+ +PV    
Sbjct: 216 RDLAQVLINRGINLDPLGEWSRLGLKIYDTPVPIGATPEYLAGHYMLQSASSMLPVMALN 275

Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
              N  +LD+CAAPGGKT  +   + +   + A D+ K RL     NL RL +    +  
Sbjct: 276 PQPNERILDMCAAPGGKTTHIAQLMKNTGVLVANDLKKERLIATVANLHRLGVTNTIVTN 335

Query: 296 MDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                +      FD VL+DAPC+  G I R P V  +R   D+V++A  Q+ L+L  I  
Sbjct: 336 YHGCKFPKVMGGFDRVLLDAPCTGLGVISRDPSVKMSRTVKDMVQNAFVQKLLILAAIDS 395

Query: 355 V----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
           +    K GG++V+S CS+   ++E VV   LR   + +    L              +  
Sbjct: 396 IDANSKSGGVLVYSTCSVSVYENEAVVNYALRKRHVKLVDTGLTFGTP-------GFTSF 448

Query: 411 GWIRITP--DMLEKIDGVSSGMDGFFAVALRRL 441
              +  P   M  +       MDGFF   L +L
Sbjct: 449 RQFKYHPSMSMTRRYYPHVHNMDGFFVAKLVKL 481


>gi|182415654|ref|YP_001820720.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1]
 gi|177842868|gb|ACB77120.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1]
          Length = 451

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 101/444 (22%), Positives = 160/444 (36%), Gaps = 75/444 (16%)

Query: 39  RLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV 98
           R    RD+ L R ++  TLR+LP I+           P  +   +Q +R+    I +L  
Sbjct: 40  RRFGSRDRRLYRELIYTTLRYLPWIE-----------PELERDAEQAVRL----IAWLAA 84

Query: 99  ADYAVVDLAVEQAKRDK-ENRHFAKLVNSILRR-VSREKIELLQRIAGISIIPEWFKERL 156
              A      E            A+    + +R  + +      R A  +++P WF E  
Sbjct: 85  DAPATAHFRHELIGEWPPCPAPLAEKAAMLAQRVGAADTAAGAGRFAPEALLPRWFHEHC 144

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----S 211
            + +   ++  +     +PL++ L         A              L    +      
Sbjct: 145 ADAFAPVQLDPL--LARAPLWLRLQTDEPRSVTAEFEQLGWTACSSAVLPGALQLLDEVD 202

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTA 268
           +     F  G+  VQD  + + +           LD CA  GGKT QL      G  V A
Sbjct: 203 VTRTDAFQNGLIEVQDLGSQLLLAAAQVAAGGHWLDACAGAGGKTLQLAALLGPGGTVDA 262

Query: 269 LDVSKRRLEKLRCNLDRLHLY------------AEDIIEMDAFDYC-------------- 302
            DV +  L++L     R  +                I                       
Sbjct: 263 HDVRRAALDELALRARRAGIPLTRSSSRSDVGRDIPIPAGAPVSDRSSPRAAPKRPAATV 322

Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                 P+ L+D VLVDAPCS +GT RR P + WT     I ++A  QR+LL Q    V+
Sbjct: 323 RILSTIPETLYDGVLVDAPCSGSGTWRRAPHLKWTTTPAHIDQAAGRQRELLEQFAQRVR 382

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG ++++ CSL ++++++VV   L S P          A          +   G + + 
Sbjct: 383 PGGRLIYATCSLSRRENQDVVAGFLASRPEFA-------AEPPPATFGAPVDAFG-LTLL 434

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P +           DGFF   +RR
Sbjct: 435 PGL--------HNTDGFFVACMRR 450


>gi|256823370|ref|YP_003147333.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Kangiella koreensis
           DSM 16069]
 gi|256796909|gb|ACV27565.1| RNA methylase, NOL1/NOP2/sun family [Kangiella koreensis DSM 16069]
          Length = 479

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 132/274 (48%), Gaps = 22/274 (8%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVS----LPGFAEGVWWVQDASASIPVQLF 237
           V  + +   +KL+ +     G  + E  + +      L     G +++Q++S+ +PV   
Sbjct: 49  VVNEWQQAGYKLDPIPWCDDGFWIDETYKPLADGFGKLLPHLAGQFYIQESSSMLPVSAL 108

Query: 238 GTLNNL--SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
              +     VLD+ AAPG KT Q+   + +   V A ++S  RL+ L  NL+R  +    
Sbjct: 109 FAAHPDPTMVLDVAAAPGSKTTQISAAMNNDGLVVANELSSSRLKVLYANLERTGVSNTI 168

Query: 293 IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +   D   +       FDA+L+DAPC   GT+R+ P+ L       ++  +  Q++L++ 
Sbjct: 169 LCHHDGRQFGEATKQTFDAILLDAPCGGEGTVRKDPEALSNWSLASVLSISELQKELIMS 228

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             + +KPGG +V+S C+L K++++ V Q +L +    VE+ PLN+ +          +PE
Sbjct: 229 AFNALKPGGTLVYSTCTLSKEENQLVCQHLLDTHSNSVEIFPLNALF---AGADKVATPE 285

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           G++ + P + +          GFF    ++   P
Sbjct: 286 GYLHLYPHLFDSE--------GFFVACFKKKPTP 311


>gi|332524650|ref|ZP_08400849.1| Sun protein [Rubrivivax benzoatilyticus JA2]
 gi|332107958|gb|EGJ09182.1| Sun protein [Rubrivivax benzoatilyticus JA2]
          Length = 436

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 177/455 (38%), Gaps = 56/455 (12%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           +  +  V R+  SLT +L           +    +  V+A+    +R+L         + 
Sbjct: 11  ADAVHAV-RQGRSLTDVLAR---------VPPDARPGVQALSFHVMRWLGSAGEARALMA 60

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA--KRDKENRHFAKLVNSILR 129
             S P     ++ LL  ++A +              V+QA     +     A  +N++LR
Sbjct: 61  PKSPP---PHVESLLLTALALLWPTGEPSPYADHTLVDQAVHAAHQRTPVAAGFINAVLR 117

Query: 130 RVSREKIELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           R  RE+ +L              P W+ ER+ + +  +   A+  A        L V   
Sbjct: 118 RFVRERDKLAAAARHQPLGAFNHPLWWIERVRHDWPTQW-QALLQASNVHPPFTLRVNRR 176

Query: 186 I---ETWAHKLNAVMLPT---------GGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
               E +  +L A              G   +   P  +  LPGFAEG   VQDA+A   
Sbjct: 177 RGSGEAYVQRLAAQGRAATLVDDAALGGQAVVLAEPCPVTQLPGFAEGEVSVQDAAAQRA 236

Query: 234 VQ---LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289
                  G      VLD CAAPGGKT  L+        ALD    RL +++ NL+RL L 
Sbjct: 237 APLLVGDGLPAGARVLDACAAPGGKTGHLLELADLDVLALDSDPVRLARVQENLNRLQLQ 296

Query: 290 AEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A        D   +   + FDA+L+DAPCS+ G +RRHPDV W R  DDI   A  Q ++
Sbjct: 297 ATLRAGDARDTARWWDGRPFDAILLDAPCSAAGIVRRHPDVRWLRRPDDITALARLQGEI 356

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSA-YWKSIDMAM 405
           L      + PGG +V++ CSL + +  E +   L+        L PL+        D   
Sbjct: 357 LDALWPLLAPGGRLVYATCSLFRSEGAEQIDAFLQRHADSGASLDPLSPGHLLPLADNPS 416

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             S    +                 DGF+   + +
Sbjct: 417 QPSARQAL----------------HDGFYYALVHK 435


>gi|322823742|gb|EFZ29411.1| nucleolar protein, putative [Trypanosoma cruzi]
          Length = 538

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 122/298 (40%), Gaps = 10/298 (3%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
            P            K R   I    +     DL V+  ++   H          G+++ E
Sbjct: 176 FPPAEAVEFFEAMEKPRPTTIRVNTLKAKRRDL-VQALLKRGMHVEPLEKWSKVGLQVFE 234

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264
               I     +  G + +Q A + +PV          VLD+ AAPGGKT  +   + +  
Sbjct: 235 SNVPIAGTVEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLMKNTG 294

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIR 323
            + A D+S+ R + L  NL RL +    +   D   Y      FD VL+DAPC+ +G I 
Sbjct: 295 VLFANDMSEPRTKALNANLQRLGVTNTVVTNYDGAGYNKIMKNFDRVLLDAPCTGSGIIS 354

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R   +  ++  +D+ +++  QR LLL  I  VK GG VV+S CS   +++E VV+  +R 
Sbjct: 355 RDKSIKSSKHYEDVQRASQQQRTLLLSAIDAVKVGGYVVYSTCSFLVEENEAVVEFAVRR 414

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  + L                E           +       MDGFF   L++L
Sbjct: 415 RHVEIVEMGLPFGRPGLTKYRHHRFHEKM-----QCSRRFFPHVHNMDGFFVCKLKKL 467


>gi|115378451|ref|ZP_01465611.1| tRNA and rRNA cytosine-C5-methylase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364557|gb|EAU63632.1| tRNA and rRNA cytosine-C5-methylase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 448

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 164/458 (35%), Gaps = 40/458 (8%)

Query: 4   GMNARLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           G  +R  ++  +     + +   L   L     ++    L  +++      V    R   
Sbjct: 7   GRPSRRAATAAIEAHVAVLRGEPLKASLATALREAE--GLGGQERRFAALAVRELSRHQR 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL---AVEQAKRDKENR 118
            +DA    +            Q L+R ++ + ++       +            R  ++ 
Sbjct: 65  LLDAAARALGHPPGKVGLTEDQALVRYALWRRIFCGEGWARIGPEVRLPGPVRPRTIKDD 124

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-- 176
             A +V   L  +   +    +  A     P W  ERL   +    + A+  A       
Sbjct: 125 LLAGVVEKPLPDMPLPESATERL-AMRYSFPTWLVERLAALHTPPILEALLAALDEEPAL 183

Query: 177 YIDLTVKFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +  +      +    +L        AV L    +R+ +    +        G   VQD  
Sbjct: 184 HFRVRPSGTRDEVLARLTEEGVAAEAVALAPDAVRIADSSHRVFETRAMKTGRLQVQDVG 243

Query: 230 ASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282
           + +  ++           +V D+CA  GGKT  L        +V A D S+RRL +    
Sbjct: 244 SQLIAEVCRPPGGSLEGRTVADVCAGAGGKTLALADMVGSAGRVLAGDRSRRRLAQA--- 300

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             R  +    +  +      P    D +LVDAPCS TG++ R PD  W      I +   
Sbjct: 301 --RERVRELSVRNVAFPHPLPLSEADVLLVDAPCSGTGSLGREPDQKWKLTAKAISEFQA 358

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  LL +     +PG ++V++ CSL  ++++EVV+  L  +P    L P+        +
Sbjct: 359 TQLTLLEEVGREARPGALIVYATCSLLPEENDEVVRGFLAKAPG-FTLEPVAPVL--GAE 415

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A AL    ++R  P  +           GFFA  LR+
Sbjct: 416 RAEALCDGPFLRPIPPRVPGG--------GFFAARLRK 445


>gi|288934704|ref|YP_003438763.1| RNA methylase, NOL1/NOP2/sun family [Klebsiella variicola At-22]
 gi|288889413|gb|ADC57731.1| RNA methylase, NOL1/NOP2/sun family [Klebsiella variicola At-22]
          Length = 477

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243
           +  +L  V     G  ++   +    + S      G++++Q+AS+ +PV      N    
Sbjct: 60  YGWQLTPVPWCEEGFWIERDGDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNPQPE 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+  D L     +  +  A  QR+L+      ++PG
Sbjct: 180 FGAALPETFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++ VVQ +L   P  VE++PL   +  + D   AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENQSVVQWLLSRYPQAVEILPLGDLFSGAAD---ALTAEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 297 IYDCE--------GFFVARLRKTA 312


>gi|110636611|ref|YP_676818.1| tRNA/rRNA cytosine-C5-methylase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279292|gb|ABG57478.1| tRNA/rRNA cytosine-C5-methylase (sun family protein) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 416

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/457 (17%), Positives = 149/457 (32%), Gaps = 75/457 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N        L  +         ++      +       RD+  + + +   +R+ 
Sbjct: 19  MKLHPNNIQSIIQALKKIFLDGAYADDVVRNLLQSNPKWG--SRDRRFIASSIYSIVRWW 76

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD---VADYAVVDLAVEQAKRDKEN 117
            R   + D          +  L   L+       Y D         ++  +  ++     
Sbjct: 77  KRYVFIADT-TKKDSDCFEKVLSAYLKE-----TYGDGLLTPLPVELNEEIFASRIKAAT 130

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                                    A  + IP+W         GKE              
Sbjct: 131 AD----------------------RAVQASIPDWMDALGVKELGKELWERELHFSNLEAD 168

Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228
           + + V            +LNA  +                 + +  L  +  G + +QD+
Sbjct: 169 VFIRVNTLKHTSAEIIKQLNAEGIEATQFGPYPETLKLAERKPLQRLHSYLNGGYEIQDS 228

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            + +         N  V+D CA  GGKT     L+ +  K+ ++D+   +L++L    +R
Sbjct: 229 GSQVIAHYLKPSPNAFVIDACAGAGGKTLHLSALMGNKGKIVSMDIEAFKLKELERRAER 288

Query: 286 LHLYAEDIIEM-DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                     + +      K   D +L+D PCS  G +RR+PD  W    + I +    Q
Sbjct: 289 AGTTIIQTKVIREGVITSLKNKADYLLLDVPCSGIGVLRRNPDDKWKLSAERIQELTQIQ 348

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +++L +  S VKPGG++V++ CS+   +++  +++ L+S+                    
Sbjct: 349 QQILQEYSSMVKPGGVLVYATCSILPIENDNQIEQFLKSN-------------------- 388

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                E    I P         S G DG+F   L + 
Sbjct: 389 TGFQLEKKQTIYP---------SEGGDGYFMARLIKK 416


>gi|323335828|gb|EGA77107.1| Nop2p [Saccharomyces cerevisiae Vin13]
          Length = 618

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549


>gi|323331975|gb|EGA73387.1| Nop2p [Saccharomyces cerevisiae AWRI796]
          Length = 485

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 74  AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 133

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 134 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 193

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 194 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 253

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 254 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 313

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 314 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 367

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 368 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 404


>gi|323307446|gb|EGA60720.1| Nop2p [Saccharomyces cerevisiae FostersO]
          Length = 618

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549


>gi|259149299|emb|CAY82541.1| Nop2p [Saccharomyces cerevisiae EC1118]
          Length = 618

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549


>gi|256273278|gb|EEU08219.1| Nop2p [Saccharomyces cerevisiae JAY291]
          Length = 618

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549


>gi|151944473|gb|EDN62751.1| nucleolar protein [Saccharomyces cerevisiae YJM789]
          Length = 618

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549


>gi|51013571|gb|AAT93079.1| YNL061W [Saccharomyces cerevisiae]
          Length = 618

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549


>gi|603587|emb|CAA58502.1| Yna1p [Saccharomyces cerevisiae]
          Length = 473

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 74  AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 133

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 134 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 193

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 194 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 253

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 254 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 313

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 314 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 367

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 368 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 404


>gi|6324268|ref|NP_014338.1| Nop2p [Saccharomyces cerevisiae S288c]
 gi|730166|sp|P40991|NOP2_YEAST RecName: Full=Putative ribosomal RNA methyltransferase Nop2;
           AltName: Full=Nucleolar protein 2
 gi|576442|emb|CAA57979.1| Nop2p [Saccharomyces cerevisiae]
 gi|1098483|gb|AAA99650.1| Ynl2428p [Saccharomyces cerevisiae]
 gi|1301934|emb|CAA95934.1| NOP2 [Saccharomyces cerevisiae]
 gi|190409050|gb|EDV12315.1| nucleolar protein NOP2 [Saccharomyces cerevisiae RM11-1a]
 gi|207341676|gb|EDZ69664.1| YNL061Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|285814591|tpg|DAA10485.1| TPA: Nop2p [Saccharomyces cerevisiae S288c]
 gi|1093321|prf||2103264A nuclear protein
          Length = 618

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  ++ E V+   LR  P  V+LV    A  K      A
Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +     +  P   +  +    +  +DGFF    +++
Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549


>gi|71030964|ref|XP_765124.1| nuclear protein [Theileria parva strain Muguga]
 gi|68352080|gb|EAN32841.1| nuclear protein, putative [Theileria parva]
          Length = 428

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 129/315 (40%), Gaps = 25/315 (7%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM---- 197
                E   +     +     +   DA   PL + +         +  A  L        
Sbjct: 106 YYGYSEELSDYFFKLFNPLEAIQFFDANEQPLPLTIRTNTLKTKRKDLAVSLINRGANVD 165

Query: 198 ----LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                   G+ +      I + P +  G + +Q AS+ IPV       N  VLD+CAAPG
Sbjct: 166 PIGDWTKEGLVVHSSKVPIGATPEYLAGHYILQSASSLIPVLSLAPRPNELVLDMCAAPG 225

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDA 309
           GKT  +   + +   + A D +K R + L  N+ RL +    +      +        D 
Sbjct: 226 GKTTHIGQLMNNTGILFANDSNKSRCKSLVSNIHRLGILNSIVCNYKGDELVRVLPKMDR 285

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G I R P +   R   D+ +++  Q++LL   I+ VKP GI+V+S CSL 
Sbjct: 286 ILLDAPCSGLGVISRDPSIKVKRGLKDLQRNSNLQKQLLTASINLVKPNGIIVYSTCSLS 345

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM---LEKIDGV 426
            +++E+V+   +R     V+LVPL            A S     +  P +     +    
Sbjct: 346 IEENEQVIHYAIRKF--NVKLVPLGLEIGTP-----AFSSFRGRKFHPSIAKFARRFYPH 398

Query: 427 SSGMDGFFAVALRRL 441
              +DGFF   L +L
Sbjct: 399 KHSLDGFFVAKLIKL 413


>gi|209881801|ref|XP_002142338.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
 gi|209557944|gb|EEA07989.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
          Length = 539

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 29/318 (9%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDL---TVKFDIETWAHKLNAVMLPTGG 202
                   E L N +  +  +   DA  +   + +    +K      AHKL +       
Sbjct: 121 YGYNVELAEYLLNLFSPKEAIEFFDANENQRPLTIRTNMLKTRRRDLAHKLISRGANVDP 180

Query: 203 IRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           I                I + P +  G + +Q AS+ IPV          +LD+ AAPGG
Sbjct: 181 IGEWTKVGLIVYSSSVPIGATPEYLSGYYMIQSASSLIPVMALAPQPGEKILDMAAAPGG 240

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAV 310
           KT  +   + +   + A D+ + R   L  NL R+ +    +I MD  +        D +
Sbjct: 241 KTTYIGQLMKNSGILYANDLRRDRCTALIANLHRMGICNSVVINMDGKELGKYLPKLDRI 300

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNC 366
           L+DAPC+  G I R P V   R   ++ + +  Q++LL   I  +    K GG VV+S C
Sbjct: 301 LLDAPCTGLGIISRDPSVKVKRTIKELNEYSLLQKELLKSAIDMIDANSKTGGFVVYSTC 360

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD---MLEKI 423
           S+  +++E VV  +L+   + +  + +                    R+ P       +I
Sbjct: 361 SISFEENEAVVDYILKVRNVKLVPLGIEIGSPGLSKFREN-------RLNPTISKYSRRI 413

Query: 424 DGVSSGMDGFFAVALRRL 441
               + MDGFF    +++
Sbjct: 414 YPHKNNMDGFFVAKFKKI 431


>gi|290508835|ref|ZP_06548206.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
           1_1_55]
 gi|289778229|gb|EFD86226.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp.
           1_1_55]
          Length = 477

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243
           +  +L  V     G  ++   +    + S      G++++Q+AS+ +PV      N    
Sbjct: 60  YGWQLTPVPWCEEGFWIERDGDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNPQPE 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+  D L     +  +  A  QR+L+      ++PG
Sbjct: 180 FGAALPEAFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++ VVQ +L   P  VE++PL   +  + D   AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENQSVVQWLLSRYPQAVEILPLGDLFSGAAD---ALTAEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 297 IYDCE--------GFFVARLRKTA 312


>gi|11498459|ref|NP_069687.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
           fulgidus DSM 4304]
 gi|2649749|gb|AAB90385.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
           fulgidus DSM 4304]
          Length = 317

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 16/261 (6%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
               +L    +P          +    +P    G+ + Q+A++ IP  +      ++VLD
Sbjct: 64  ENLKELITGRVPWCEEGFYLSIDEFSRIPEHQLGLIFSQEAASMIPPLVMELEPKMTVLD 123

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CP 303
           + A+PG KT Q    + +   + A DV   R+  L  NL R  +    +   D   +   
Sbjct: 124 IAASPGAKTTQIAQYLQNEGCIVANDVKHSRINILISNLQRCGVLIAKVTVKDGRYFGRF 183

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +  FDAVLVDAPCS+ G IR++   +      D    +  Q+ LL+     VKPGG+VV+
Sbjct: 184 RNRFDAVLVDAPCSNMGMIRKNYRNIRLWKMRDCYGLSKLQKSLLMAAYKAVKPGGVVVY 243

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE--GWIRITPDM 419
           S C+L+  ++EEVV  +LR++   +E V  P+      +       S E    +R+ P  
Sbjct: 244 STCTLEPIENEEVVDYILRNTDAEIEEVNLPVKGVEPFTKFDGKEYSEEVRKCLRLHPQ- 302

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
                  SS  +GFF   LR+
Sbjct: 303 -------SSDTEGFFVAKLRK 316


>gi|255718325|ref|XP_002555443.1| KLTH0G09460p [Lachancea thermotolerans]
 gi|238936827|emb|CAR25006.1| KLTH0G09460p [Lachancea thermotolerans]
          Length = 637

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 139/338 (41%), Gaps = 27/338 (7%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK-- 183
           +  R  S     LL+ I       ++  E+L N +     L   +A      + +     
Sbjct: 230 AEGRSRSEYVDRLLKDICEYFGYSQFLAEKLFNLFSPTEALEFFEANEVSRPVTIRTNSL 289

Query: 184 -FDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
                  A  L                G+++ +    I + P +  G + +Q AS+ +PV
Sbjct: 290 KTRRRDLAQTLVNRGVNLKPIGPWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 349

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 350 VALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNT 409

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 410 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIAKDQSVKVSRTDKDFMQIPHLQKQLLLS 469

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG++V+S CS+  +++E VV   LR  P  V+LV    A  K      A
Sbjct: 470 AIDSVDANSKTGGVIVYSTCSVAVEENEAVVDYALRKRPN-VKLVDAGLAIGK-----EA 523

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRLI 442
                  +  P   +  +       +DGFF    +++ 
Sbjct: 524 FVSYRGKKFHPSVKLARRYYPHVYNVDGFFVAKFQKIA 561


>gi|325845413|ref|ZP_08168708.1| NOL1/NOP2/sun family protein [Turicibacter sp. HGF1]
 gi|325488563|gb|EGC90977.1| NOL1/NOP2/sun family protein [Turicibacter sp. HGF1]
          Length = 464

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 119/312 (38%), Gaps = 24/312 (7%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDA-CISPLYIDLTVKFDIETWAHKLNAVM----LP 199
           +  +P+ F ++++   G+E    I          + L +         + N +       
Sbjct: 9   MMSLPQDFLDKMQQLLGEEFDEFIKSYDHEKSHGLRLNLLKTSMESFKEKNKLTLDSIPW 68

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258
                  +  E     P    GV+++Q+ SA              VLDLCAAPGGK+   
Sbjct: 69  VEEGFFYKGEERPGKHPYHEAGVYYIQEPSAMSVGAFVEAKPGEKVLDLCAAPGGKSTHV 128

Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314
              +     + A ++  +R + L  N++R+ +    ++              FD ++VDA
Sbjct: 129 ASQLGQKGLLVANEIYPQRAKILSQNIERMGVKNAIVLNETPARLAKHFPLYFDRIVVDA 188

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+          +++   A  Q ++L +    +KPGG +V+S C+   +++E
Sbjct: 189 PCSGEGMFRKDVVAQEEWSLENVKLCAARQNEILEEAAKMLKPGGRLVYSTCTFAPEENE 248

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-----LSPEGWIRITPDMLEKIDGVSSG 429
           + + + +   P   E+  +N+                   E   R+ P  +         
Sbjct: 249 QAIAQFISHHP-EFEIESINAYESFKPGRGEWSQIAVEGIEKTYRLWPHYI--------N 299

Query: 430 MDGFFAVALRRL 441
            +G +   LR++
Sbjct: 300 GEGHYLAVLRKV 311


>gi|206579412|ref|YP_002237778.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae 342]
 gi|226725340|sp|B5XQ35|RSMF_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|206568470|gb|ACI10246.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae 342]
          Length = 477

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243
           +  +L  V     G  ++   +    + S      G++++Q+AS+ +PV      N    
Sbjct: 60  YGWQLTPVPWCEEGFWIERDGDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNPQPE 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+  D L     +  +  A  QR+L+      ++PG
Sbjct: 180 FGAALPEAFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++ VVQ +L   P  VE++PL   +  + D   AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENQSVVQWLLSRYPQAVEILPLGDLFSGAAD---ALTAEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 297 IYDCE--------GFFVARLRKTA 312


>gi|50425343|ref|XP_461265.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
 gi|49656934|emb|CAG89654.1| DEHA2F21054p [Debaryomyces hansenii]
          Length = 611

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 128/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  ++L N +     +   +A      I +            A  L    + 
Sbjct: 234 CEYFGYSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVN 293

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 294 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAA 353

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT     ++ +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 354 PGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 413

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D +L+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 414 DRILLDAPCSGTGVIAKDETVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSATGGVIVY 473

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E VV   LR  P  V+LV       K        +       +P   +  
Sbjct: 474 STCSVAVEENESVVDYALRKRPN-VKLVDAGLQIGK-----EGFTSYRGKHFSPSISLTR 527

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGF+    +++ 
Sbjct: 528 RYYPHTYNVDGFYVAKFKKIA 548


>gi|293374841|ref|ZP_06621143.1| NOL1/NOP2/sun family protein [Turicibacter sanguinis PC909]
 gi|292646510|gb|EFF64518.1| NOL1/NOP2/sun family protein [Turicibacter sanguinis PC909]
          Length = 455

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 118/311 (37%), Gaps = 24/311 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDA-CISPLYIDLTVKFDIETWAHKLNAVM----LPT 200
             +P+ F ++++   G+E    I          + L +         + N +        
Sbjct: 1   MSLPQDFLDKMQQLLGEEFDEFIKSYDHEKSHGLRLNLLKTSMESFKEKNKLTLDSIPWV 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 +  E     P    GV+++Q+ SA              VLDLCAAPGGK+    
Sbjct: 61  EEGFFYKGEERPGKHPYHEAGVYYIQEPSAMSVGAFVEAKPGEKVLDLCAAPGGKSTHVA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             +     + A ++  +R + L  N++R+ +    ++              FD ++VDAP
Sbjct: 121 SQLGQKGLLVANEIYPQRAKILSQNIERMGVKNAIVLNETPARLAKHFPLYFDRIVVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+          +++   A  Q ++L +    +KPGG +V+S C+   +++E+
Sbjct: 181 CSGEGMFRKDVVAQEEWSLENVKLCATRQNEILEEAAKMLKPGGRLVYSTCTFAPEENEQ 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----SPEGWIRITPDMLEKIDGVSSGM 430
            + + +   P   E+  +N+                   E   R+ P  +          
Sbjct: 241 AIAQFISHHP-EFEIESVNAYESFKPGRGEWSQIAVGGIEKTYRLWPHYI--------NG 291

Query: 431 DGFFAVALRRL 441
           +G +   LR++
Sbjct: 292 EGHYLAVLRKV 302


>gi|212639278|ref|YP_002315798.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized
           domain [Anoxybacillus flavithermus WK1]
 gi|212560758|gb|ACJ33813.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized
           domain [Anoxybacillus flavithermus WK1]
          Length = 457

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 120/314 (38%), Gaps = 23/314 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDAC----ISPLYIDLTVKFDIETWAHKLNAVMLPTG 201
             +P+ F  ++      E     +              L V               +P  
Sbjct: 7   CHLPKEFVTKMNALLQDEAERFFATYNEEKVNGLRINSLKVSPSTFLNISPWELEPIPFC 66

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-- 259
                         P  A G++++Q+ SA    ++        VLDLCAAPGGKT QL  
Sbjct: 67  PTGFYYYNAQPGKHPYHAAGLYYIQEPSAMFVAEVLAPSPGERVLDLCAAPGGKTTQLAA 126

Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPC 316
            + +   + A ++  +R++ L  N++RL +    +            +  FD +LVDAPC
Sbjct: 127 LMNNEGFLLANEIHPKRVKALSENIERLGITNAVVTNETPEKLSETFEGFFDKILVDAPC 186

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G  R+  + +     + + K A  QR +L      +  GG +V+S C+   +++E++
Sbjct: 187 SGEGMFRKDEEAIQFWSLEHVQKCAQTQRHILSCAYKMLSEGGTLVYSTCTFSPEENEQI 246

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGMD 431
           +   L +    +EL+P+   +     ++   +          R+ P  L+          
Sbjct: 247 IDWFLATY-EDMELIPIEKKHGIQPGVSHWTNTHRGNIAHTARLWPHHLKGE-------- 297

Query: 432 GFFAVALRRLIQPK 445
           G F   +R+    K
Sbjct: 298 GHFVAKMRKRGSTK 311


>gi|125975638|ref|YP_001039548.1| NOL1/NOP2/sun family RNA methylase [Clostridium thermocellum ATCC
           27405]
 gi|256003627|ref|ZP_05428616.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
           2360]
 gi|281416646|ref|ZP_06247666.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum JW20]
 gi|125715863|gb|ABN54355.1| putative RNA methylase, NOL1/NOP2/sun family [Clostridium
           thermocellum ATCC 27405]
 gi|255992418|gb|EEU02511.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
           2360]
 gi|281408048|gb|EFB38306.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum JW20]
 gi|316939755|gb|ADU73789.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM
           1313]
          Length = 456

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 16/252 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
             T         E+    P +  G++++Q+ SA +P  +        VLDLCAAPGGKT 
Sbjct: 59  PWTKDGFYYNEGENPGKHPYYHAGLYYIQEPSAMLPGAVINAEEGDYVLDLCAAPGGKTV 118

Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
           Q+   +     + A D+S  R++ L  N++   +    +     D         FD +LV
Sbjct: 119 QMAAGMKGKGLLIANDISSDRVKALVKNIELCGITNAIVTNESPDRLAKKLCAFFDRILV 178

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+  D   +       K    QR++L      +KPGG +V+S C+   ++
Sbjct: 179 DAPCSGEGMFRKDEDAAKSWGKFKCDKCCAMQREILESADVMLKPGGYLVYSTCTFSPEE 238

Query: 373 SEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSG 429
           +E ++ + L       +  +P               + E     RI P  +         
Sbjct: 239 NEGMISEFLSRHKNYDILEIPKAYGIDNGRPEWWDNNKELLKTARIWPHKVRGE------ 292

Query: 430 MDGFFAVALRRL 441
             G F   L++ 
Sbjct: 293 --GHFVALLKKK 302


>gi|307294658|ref|ZP_07574500.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1]
 gi|306879132|gb|EFN10350.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1]
          Length = 395

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 144/459 (31%), Gaps = 81/459 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  ++        +   L+   + +  +     RD+  VR  V  
Sbjct: 1   MTPS--ARVQAAIELLDAIIASARDGGPAADTLIARYFKERRYAG--SRDRRAVRDHVYD 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R           V       +         V +A                 E A    
Sbjct: 57  AVRR----------VAERPESGRAA------MVGLA-------------RERAELAALFD 87

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            + H    +                  A   I+P W +  L      ER   +  A +  
Sbjct: 88  GSAHGPAPIVDGEA------------GAPAGIVPGWIEPLL--AAPVERDALLGRAPVDL 133

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
               L    D     +   A +              +     +  G   VQDA + +   
Sbjct: 134 RVNRLKADPDRVAQHYPEAARIAGLPDALRLPEGSPVEQSDPWKWGQVEVQDAGSQLISA 193

Query: 236 LFGTLNNLSVLDLCAAPGGKT-------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                  ++V+DLCA  GGKT                + A D  + RL +L    +R   
Sbjct: 194 ACNAAPGMTVIDLCAGAGGKTLALASALGGNGGGKGVLIAADTIRSRLARLDPQAERAGA 253

Query: 289 YAEDIIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              + + +D               D VLVDAPCS TGT RR+P+  W      + +    
Sbjct: 254 TFIETLLLDQGHEAGALESLNGRADIVLVDAPCSGTGTWRRNPEARWRLTPARLDRLVAE 313

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q ++L      + PGG +V++ C+L  ++  + V+  L                 + I+ 
Sbjct: 314 QARILDFAAPLLAPGGALVYAVCALTDREGRDQVRAFLERHDGWAV---------ERIEA 364

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           AM  +    + +TP           G DGF+   LRR +
Sbjct: 365 AMGRAHGDGLLLTPGH--------DGTDGFYVARLRRTV 395


>gi|289579009|ref|YP_003477636.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter italicus
           Ab9]
 gi|289528722|gb|ADD03074.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter italicus
           Ab9]
          Length = 459

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G++++Q+ +A   V++        +LD+ AAPGGKT      I     + A ++ K+R++
Sbjct: 83  GLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKIGDEGLIVANEIDKKRIK 142

Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N++RL +    I     +      +  FD +LVDAPCS  G  R+ P        +
Sbjct: 143 ALVENVERLGIRNIVITNETPEKLTTAFEGYFDKILVDAPCSGEGMFRKDPTARKIWSLN 202

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           +++  +  Q+ +L      +KPGGI+V+S C+   +++E V++K L   P         S
Sbjct: 203 NVISCSITQKNILRNVAPLLKPGGILVYSTCTFSPEENEGVIKKFLEEYPEFKVEKSEMS 262

Query: 396 AYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++          PE     +R+ P  +           G F   LR+ 
Sbjct: 263 KFFDRGYPEWVEGPEDLKKCMRLWPHKVRGE--------GHFIAKLRKK 303


>gi|117920752|ref|YP_869944.1| Fmu (Sun) domain-containing protein [Shewanella sp. ANA-3]
 gi|117613084|gb|ABK48538.1| Fmu (Sun) domain protein [Shewanella sp. ANA-3]
          Length = 404

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 143/448 (31%), Gaps = 72/448 (16%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +  +    LR L        
Sbjct: 12  ELVISILAMVLSEGKPLDRAYSQHFSGLK---LVPAEQARIATVTGDILRRLNLYCF--- 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +        +    +LL V    + + L++                         +   
Sbjct: 66  -LAEIKPEEMERLGSKLLNV--WHLFHNLELPKMQ-------------------YSLPVD 103

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
             R++    +   +       PEW  + +              A  +P    L V     
Sbjct: 104 AERLAERIEQAKNQPVLWDGCPEWL-DAMGQAQLAASWEKERAALSTPPKRFLRVNGLKV 162

Query: 185 DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             +  A KL A  + T  +   +         ++     F +G++  QDA +        
Sbjct: 163 TRDDLAQKLAAEFVTTQAVEGVDSALEVTSDSALFRTNCFKDGLFEQQDAGSQRVAAALD 222

Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII- 294
               + V+D CA  GGKT      +    ++ A+DV + +L+ L+    R   +  +   
Sbjct: 223 AKPGMRVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRL 282

Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                     K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L     
Sbjct: 283 IVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILSSYSR 342

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VK GGIVV++ CS+   ++   V   L  +P    L                       
Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLED--------------------- 381

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  E I    +G DGF+   L R+
Sbjct: 382 -------ETISPAETGFDGFYLAKLERI 402


>gi|259908244|ref|YP_002648600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia pyrifoliae
           Ep1/96]
 gi|224963866|emb|CAX55368.1| Ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae
           Ep1/96]
 gi|283478175|emb|CAY74091.1| Ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae
           DSM 12163]
          Length = 462

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 21/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241
           E +   L  +     G  +         + S      G+ ++Q+AS+ +PV         
Sbjct: 43  EPYQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLLYIQEASSMLPVSALFAGGHM 102

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              V+D+ AAPG KT Q+         + A + S  R++ L  NL R  +    +   D 
Sbjct: 103 PQRVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDG 162

Query: 299 FDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +     + FDAVL+DAPCS  G +R+  D L         + A  QR L+      ++
Sbjct: 163 RVFGSALPECFDAVLLDAPCSGEGVVRKDADALRNWSETSTAEIAATQRDLINSAFHALR 222

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S C+L+  ++++V++ +L   P  VE+ PL++ +          + EG++ + 
Sbjct: 223 PGGTLVYSTCTLNLSENQQVIRWLLEQYPDAVEIEPLDTLF---NGAEQVATAEGFLHVF 279

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P + +          GFF   LR++ 
Sbjct: 280 PHIFDSE--------GFFVARLRKVA 297


>gi|169626371|ref|XP_001806586.1| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15]
 gi|160705823|gb|EAT76170.2| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15]
          Length = 725

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 32/334 (9%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VK 183
             R  +  + ++L+ I       E+  ++L N +      A  +A  +P  I +    ++
Sbjct: 247 PGRSRTEYRAQMLKDICAYYGYSEFLADKLLNLFPAREAFAFFEANETPRPIVIRTNTLR 306

Query: 184 FDIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                 A  L    +    +        ++ E    + + P +  G + +Q AS+ +PV 
Sbjct: 307 THRRELAQSLINRGVQLEPVGKWSKVGLQIFESQVPLGATPEYLAGHYILQAASSFLPVM 366

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                 +  VLD+ AAPGGKT  +   + +   + A D +K R + L  N+ RL +    
Sbjct: 367 ALAPQEHERVLDMTAAPGGKTTHIAALMKNTGCIFANDANKDRAKGLIGNIHRLGVRNSV 426

Query: 293 IIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           +    A ++      FD VL+DAPCS TG I +   V   +   D +K    Q++L+L  
Sbjct: 427 VCHYSALEFPRVMGGFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLILSA 486

Query: 352 ISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           I  V    K GG +V+S CS+  +++E+V+Q  L   P  V+LV     + K     +A 
Sbjct: 487 IDSVDHHSKTGGYIVYSTCSVTVEENEQVIQYALNKRPN-VKLVETGLTFGKEGFTNIA- 544

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              G +R  P            +DGFF    +++
Sbjct: 545 ---GKVRYYPHTY--------NVDGFFVAKFKKI 567


>gi|146094454|ref|XP_001467280.1| nucleolar protein [Leishmania infantum JPCM5]
 gi|134071645|emb|CAM70335.1| putative nucleolar protein [Leishmania infantum JPCM5]
          Length = 628

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 124/314 (39%), Gaps = 24/314 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195
               E+  + +   +     +   +A        + V          + A          
Sbjct: 230 YEYSEFLMDSILQLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEP 289

Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++ E    I     +  G + +Q A++ +PV       N  VLD+ AAPGG
Sbjct: 290 LEKWSKVGLQVFESNVPIAGTIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGG 349

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310
           KT  +   + +   + A DVS+ R + L  NL RL +    +   D   Y    + FD V
Sbjct: 350 KTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGTGYERVMRNFDRV 409

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS TG I R   +  ++  +DI +++  QR LLL  I   K GG VV+S CS   
Sbjct: 410 LLDAPCSGTGIISRDKSIKTSKQHEDIQRASQLQRALLLSAIDACKIGGYVVYSTCSFLV 469

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSS 428
           ++ E +V   LR   + V  + L              +     R    +    +      
Sbjct: 470 EEDEAIVDFALRRRDVQVVEMGLPFGRP-------GFTKYRHHRYHDSLEFSRRYFPHVH 522

Query: 429 GMDGFFAVALRRLI 442
            MDGFF   L++L 
Sbjct: 523 NMDGFFICKLKKLT 536


>gi|255721331|ref|XP_002545600.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404]
 gi|240136089|gb|EER35642.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404]
          Length = 623

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L N +     +   +A      + +            A  L    + 
Sbjct: 245 CEYFGYSEFLAEKLFNLFSPAEAMEFFEANEIARPVTIRTNTLKTRRRDLAQALVNKGVN 304

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 305 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALEPQENERILDMAAA 364

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 365 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 424

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 425 DRVLLDAPCSGTGVIAKDASVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSPTGGVIVY 484

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+LV       K        +        P   +  
Sbjct: 485 STCSIAVDENEAVVDYALRKRPN-VKLVDTGLTIGK-----EGFTSYRGKHFNPKIALTR 538

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGF+    +++ 
Sbjct: 539 RYYPHTYNVDGFYVAKFKKIA 559


>gi|45187619|ref|NP_983842.1| ADL254Wp [Ashbya gossypii ATCC 10895]
 gi|44982357|gb|AAS51666.1| ADL254Wp [Ashbya gossypii ATCC 10895]
          Length = 603

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 136/338 (40%), Gaps = 23/338 (6%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           K + +  R  S     LL+ I        +  E+L N +     +   +A      + + 
Sbjct: 202 KHMAAEGRSRSEYIDRLLKDICQYFGYTPFLAEKLFNLFSPAEAMEFFEANEVARPVTIR 261

Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230
                      A  L    +    I                + + P +  G + +Q AS+
Sbjct: 262 TNTLKTRRRDLAQNLVNRGVNLQPIGSWTKVGLQIFDSQVPVGATPEYLAGHYILQAASS 321

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
            +PV       N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL 
Sbjct: 322 FLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLG 381

Query: 288 LYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                +   DA ++      FD +L+DAPCS TG I +   V   R   D ++    Q++
Sbjct: 382 CTNTIVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQ 441

Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
           L+L  I  V    K GG++V+S CS+  +++E VV   LR  P  V+LV    A  K   
Sbjct: 442 LILSAIDSVDSNSKHGGVIVYSTCSVAVEENEAVVDYALRKRPN-VKLVETGLAIGKE-G 499

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +    I  ++  +    +  +DGFF    ++
Sbjct: 500 FTSYRGKKFHHTI--NLTRRYYPHTYNVDGFFVAKFQK 535


>gi|146292408|ref|YP_001182832.1| Fmu (Sun) domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145564098|gb|ABP75033.1| Fmu (Sun) domain protein [Shewanella putrefaciens CN-32]
          Length = 463

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 147/450 (32%), Gaps = 52/450 (11%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF-VL 71
            L   +   ++    +L   + +        +D+ ++R  +    R+      + D    
Sbjct: 42  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRIGDQQAS 99

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            +       S   LL     Q          +     E ++   + +    L    L   
Sbjct: 100 ATYFASLSAS--ALLEAHAWQ---------DIATAWHELSQSPIDYQQAQALAVDSLDDK 148

Query: 132 SREKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                 L           +P WF +        +     + +   P++         +  
Sbjct: 149 LTLMQHLFPAAKLKPQDLLPNWFWQVCPIDAALQTQSIEAMSSRPPIWGRAQGITSQDAA 208

Query: 190 AHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                  +  + G    +         ++  +  + +G   +QD ++ +  Q+     + 
Sbjct: 209 TQLQALGIDASYGHYFNDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDA 268

Query: 244 SVLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
              D C+  GGKT               I S   + + D+    LE+L     R H    
Sbjct: 269 HWWDACSGAGGKTLQLRSLMLAKAADNQIPSAGSIISSDIRSNALEELTKRAQRAHFNNI 328

Query: 292 DIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +    +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L +
Sbjct: 329 SVARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGIEAVADKAALQLDILSR 388

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               VK GG++V++ CSL   ++++VV   L+  P    L P+   +             
Sbjct: 389 SSRAVKAGGVLVYATCSLSPLENQDVVTAFLQQHP-EFTLTPIRHPFTGEQTE------- 440

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + + P          +  DG F   + R
Sbjct: 441 -MLTVWP--------FEANSDGMFVARMLR 461


>gi|310821489|ref|YP_003953847.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309394561|gb|ADO72020.1| Methyltransferase, RsmB/NOP family [Stigmatella aurantiaca DW4/3-1]
          Length = 456

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 164/458 (35%), Gaps = 40/458 (8%)

Query: 4   GMNARLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           G  +R  ++  +     + +   L   L     ++    L  +++      V    R   
Sbjct: 15  GRPSRRAATAAIEAHVAVLRGEPLKASLATALREAE--GLGGQERRFAALAVRELSRHQR 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL---AVEQAKRDKENR 118
            +DA    +            Q L+R ++ + ++       +            R  ++ 
Sbjct: 73  LLDAAARALGHPPGKVGLTEDQALVRYALWRRIFCGEGWARIGPEVRLPGPVRPRTIKDD 132

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-- 176
             A +V   L  +   +    +  A     P W  ERL   +    + A+  A       
Sbjct: 133 LLAGVVEKPLPDMPLPESATERL-AMRYSFPTWLVERLAALHTPPILEALLAALDEEPAL 191

Query: 177 YIDLTVKFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +  +      +    +L        AV L    +R+ +    +        G   VQD  
Sbjct: 192 HFRVRPSGTRDEVLARLTEEGVAAEAVALAPDAVRIADSSHRVFETRAMKTGRLQVQDVG 251

Query: 230 ASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282
           + +  ++           +V D+CA  GGKT  L        +V A D S+RRL +    
Sbjct: 252 SQLIAEVCRPPGGSLEGRTVADVCAGAGGKTLALADMVGSAGRVLAGDRSRRRLAQA--- 308

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
             R  +    +  +      P    D +LVDAPCS TG++ R PD  W      I +   
Sbjct: 309 --RERVRELSVRNVAFPHPLPLSEADVLLVDAPCSGTGSLGREPDQKWKLTAKAISEFQA 366

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q  LL +     +PG ++V++ CSL  ++++EVV+  L  +P    L P+        +
Sbjct: 367 TQLTLLEEVGREARPGALIVYATCSLLPEENDEVVRGFLAKAPG-FTLEPVAPVL--GAE 423

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            A AL    ++R  P  +           GFFA  LR+
Sbjct: 424 RAEALCDGPFLRPIPPRVPGG--------GFFAARLRK 453


>gi|304316052|ref|YP_003851197.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777554|gb|ADL68113.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 466

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 110/252 (43%), Gaps = 18/252 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  +          G++++Q+ SA   V+    +    VLDL AAPGGK+ 
Sbjct: 72  PWCDTGFYYDQNDKPGKHYYHDAGLFYIQEPSAMAVVEALNPVPGDIVLDLSAAPGGKST 131

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
            +         + + +++ +R++ L  N++R+ +    I+    +  +   K  FD +LV
Sbjct: 132 HIASKLNGEGLLVSNEINSKRVKVLAENIERIGIRNAVILNESPEKLEKTFKDYFDKILV 191

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+          ++++  A  Q+K+L      +KPGGI+V+S C+   ++
Sbjct: 192 DAPCSGEGMFRKDETARDEWSLENVLSCAYRQKKILDSASCMLKPGGIMVYSTCTFSPEE 251

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSS 428
           +E V+   L++     EL+ +          +  ++        +R+ P +L+       
Sbjct: 252 NEGVIDHFLKNH-SDFELIEIYKHEGFDNGHSEWVNGCSDLRKCVRLWPHLLKGE----- 305

Query: 429 GMDGFFAVALRR 440
              G F   LR+
Sbjct: 306 ---GHFIAKLRK 314


>gi|126140362|ref|XP_001386703.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054]
 gi|126093987|gb|ABN68674.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054]
          Length = 625

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 127/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L N +     +   +A      I +            A  L    + 
Sbjct: 247 CEYFGYSEFLAEKLFNLFSPSEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVN 306

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  VLD+ AA
Sbjct: 307 LQPIGSWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVIALAPQENERVLDMAAA 366

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 367 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 426

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GGI+V+
Sbjct: 427 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSATGGIIVY 486

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+L+       K        +        P  ++  
Sbjct: 487 STCSIAVDENESVVDYALRKRPN-VKLIEAGLEIGK-----EGFTSYRGKHFNPSLNLTR 540

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGFF    +++ 
Sbjct: 541 RYYPHTYNVDGFFVAKFKKIA 561


>gi|297545215|ref|YP_003677517.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842990|gb|ADH61506.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 459

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G++++Q+ +A   V++        +LD+ AAPGGKT      I     + A ++ K+R++
Sbjct: 83  GLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKIGDEGLIVANEIDKKRMK 142

Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N++R+ +    I     +      +  FD +LVDAPCS  G  R+ P        +
Sbjct: 143 ALVENVERMGIRNIVITNETPEKLTTAFEGYFDKILVDAPCSGEGMFRKDPTARKIWSLN 202

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           +++  +  Q+ +L      +KPGGI+V+S C+   +++E V++K L   P         S
Sbjct: 203 NVISCSITQKNILRNVAPLLKPGGILVYSTCTFSPEENEGVIKKFLEEYPEFKVEKSEMS 262

Query: 396 AYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++          PE     +R+ P  +           G F   LR+ 
Sbjct: 263 KFFDRGYPEWVEGPEDLKKCMRLWPHKVRGE--------GHFIAKLRKK 303


>gi|149915201|ref|ZP_01903729.1| Fmu (Sun) [Roseobacter sp. AzwK-3b]
 gi|149810922|gb|EDM70761.1| Fmu (Sun) [Roseobacter sp. AzwK-3b]
          Length = 388

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 140/455 (30%), Gaps = 81/455 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  V+         L      S F     +D+  VR  V   LR 
Sbjct: 1   MTP--EARIQAAIEVLDGVLAGDA-AEKALTSWGRRSRFAG--SKDRAAVRDHVFQALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVS--VAQILYLDVADYAVVDLAVEQAKRDKEN 117
                 +        L      +   LR      + ++        V    E A      
Sbjct: 56  RRSYACLGGAETGRGL------MLGALRAGGVAPETVFTGQGHAPEVLSQHEAA------ 103

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
              A +                        +P+W    L      +   A +        
Sbjct: 104 AGAAPVTVGD-----------------RLDLPDWMVP-LFEAALGDGAEAAAVMLRERAP 145

Query: 178 IDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           + L V   + + +  +              +    + + E    +     +A G   +QD
Sbjct: 146 VCLRVNIRMNSVSEVIEYMMESGISVRRTEVAEEALIVTEGARKVAQSELYARGGIELQD 205

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
            ++   +          VLD CA  GGK         A   A D   RR+  L     R 
Sbjct: 206 GASQAAMAALEITPGARVLDYCAGGGGKVLALAARHDAMWFAHDADPRRMADLPARGARA 265

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +    +   D     P   FD VL D PCS +GT RR PD  W    + +      QR+
Sbjct: 266 GVEVTQLEVGDLAAAGP---FDLVLCDVPCSGSGTWRRAPDAKWRLTPERLDALCAIQRE 322

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    + V PGG +V + CS+ + ++E+     L+S P          A+ +++     
Sbjct: 323 ILESAAALVAPGGQLVLTTCSVFRCENEDQSAAFLQSYP----------AWGETLRRRWP 372

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +S EG                   DGFF    +R+
Sbjct: 373 VSAEG-------------------DGFFLSVFKRI 388


>gi|295658139|ref|XP_002789632.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb01]
 gi|226283185|gb|EEH38751.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb01]
          Length = 677

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 137/318 (43%), Gaps = 23/318 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +      A  +A  SP  + +    ++ +  + A  L    + 
Sbjct: 265 CTYYGYSPFLAEKLFNLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVV 324

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 325 LEPVGKWSKVGLQVFESSVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAA 384

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306
           PGGKT  +   + +   V A D SK R + L  N+ RL      +  +DA +  PK    
Sbjct: 385 PGGKTTYISALMRNTGCVLANDASKLRAKGLIGNIHRLGCKNTIVSHLDAREAFPKILGG 444

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD +L+DAPCS TG I + P V  ++   D +     Q++LLL  I       K GG +V
Sbjct: 445 FDRILLDAPCSGTGVISKDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIV 504

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+  +++E VVQ  LR  P  V++V      + +      +  +   ++T  +  +
Sbjct: 505 YSTCSVTVEENESVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMGKKFDEKMT--LTRR 561

Query: 423 IDGVSSGMDGFFAVALRR 440
                  +DGF+   L++
Sbjct: 562 YFPHRENVDGFYVCKLKK 579


>gi|160875201|ref|YP_001554517.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS195]
 gi|160860723|gb|ABX49257.1| Fmu (Sun) domain protein [Shewanella baltica OS195]
 gi|315267394|gb|ADT94247.1| Fmu (Sun) domain protein [Shewanella baltica OS678]
          Length = 404

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 139/448 (31%), Gaps = 72/448 (16%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +       LR L      L 
Sbjct: 12  ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALTTGDILRRLNLYCY-LA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +    + R    L          + + L++                         +   
Sbjct: 68  EISPDEMERFGSKLLN-----AWHLFHGLELPKMQ-------------------YSLQVD 103

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
             R++    +   +       PEW  + +      E       A  +     L       
Sbjct: 104 EARLAERTEQAKTKPVLWDGCPEWL-DAMGREQLGESWEKERAALSTAPKRFLRANGLKV 162

Query: 185 DIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             E  A KL A       +             ++     F +G++  QDA +        
Sbjct: 163 TREELAAKLAAEFVSTLSVDGVDSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALD 222

Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DI 293
               + V+D CA  GGKT      +    ++ A+DV + +L+KL+    R   +     +
Sbjct: 223 AKPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAHNVETRV 282

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           I         K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L     
Sbjct: 283 IVSSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTVERLPVLMELQKHILTSYSR 342

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VK GGIVV++ CS+   ++   V   L  +P    +                       
Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLIED--------------------- 381

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  E I    SG DGF+   L R+
Sbjct: 382 -------ESISPADSGFDGFYLAKLERI 402


>gi|311279266|ref|YP_003941497.1| RNA methylase, NOL1/NOP2/sun family [Enterobacter cloacae SCF1]
 gi|308748461|gb|ADO48213.1| RNA methylase, NOL1/NOP2/sun family [Enterobacter cloacae SCF1]
          Length = 499

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 129/264 (48%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +  +L  V     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 81  YGWQLTPVPWCEEGFWIERNDEEDVPLGSTAEHLSGLFYIQEASSMLPVTALFADGNRPQ 140

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 141 RVMDVAAAPGSKTTQIAARMGNQGAILANEYSASRVKVLHANISRCGISNAALTHFDGRV 200

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +     A  QR+L+      ++PG
Sbjct: 201 FGAALPETFDAILLDAPCSGEGVVRKDPDALKNWSPESNQAIAATQRELIDSAFHALRPG 260

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++EEV+  ++   P  +E++PLN+ +    D A AL+PEG++ + P 
Sbjct: 261 GTLVYSTCTLNREENEEVLAWLMARFPQALEILPLNALFP---DAAKALTPEGFLHVFPQ 317

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 318 IYDCE--------GFFVARLRKTA 333


>gi|322501342|emb|CBZ36420.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 628

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 124/313 (39%), Gaps = 24/313 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195
               E+  + +   +     +   +A        + V          + A          
Sbjct: 230 YEYSEFLMDSILQLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEP 289

Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++ E    I     +  G + +Q A++ +PV       N  VLD+ AAPGG
Sbjct: 290 LEKWSKVGLQVFESNVPIAGTIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGG 349

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310
           KT  +   + +   + A DVS+ R + L  NL RL +    +   D   Y    + FD V
Sbjct: 350 KTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGTGYERVMRNFDRV 409

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS TG I R   +  ++  +DI +++  QR LLL  I   K GG VV+S CS   
Sbjct: 410 LLDAPCSGTGIISRDKSIKTSKQHEDIQRASQLQRALLLSAIDACKIGGYVVYSTCSFLV 469

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSS 428
           ++ E +V   LR   + V  + L              +     R    +    +      
Sbjct: 470 EEDEAIVDFALRRRDVQVVEMGLPFGRP-------GFTKYRHHRYHDSLEFSRRYFPHVH 522

Query: 429 GMDGFFAVALRRL 441
            MDGFF   L++L
Sbjct: 523 NMDGFFICKLKKL 535


>gi|113970468|ref|YP_734261.1| Fmu (Sun) domain-containing protein [Shewanella sp. MR-4]
 gi|113885152|gb|ABI39204.1| Fmu (Sun) domain protein [Shewanella sp. MR-4]
          Length = 404

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 143/448 (31%), Gaps = 72/448 (16%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +  +    LR L        
Sbjct: 12  ELVISILAMVLSEGKPLDRAYSQHFSGLK---LVPAEQARIATVTGDILRRLNLYCF--- 65

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +        +    +LL V    + + L++                         +   
Sbjct: 66  -LAEIKPEEMERLGSKLLNV--WHLFHKLELPKMQ-------------------YSLPVD 103

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
             R++    +  ++       PEW     +   G         A  +P    L V     
Sbjct: 104 AERLAERIEQAQRQPVLWDGCPEWLDTMGQAQLGTSW-EKERAALSTPPKRFLRVNGLKV 162

Query: 185 DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             +  A KL    + T  +   +         ++     F +G++  QDA +        
Sbjct: 163 SRDELAQKLATEFVTTQAVEDVDSALEVTSDSALFRTNSFKDGLFEQQDAGSQRVAAALD 222

Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII- 294
               + V+D CA  GGKT      +    ++ A+DV + +L+ L+    R   +  +   
Sbjct: 223 AKPGMRVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRL 282

Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                     K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L     
Sbjct: 283 IVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILSSYSR 342

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VK GGIVV++ CS+   ++   V   L  +P    L                       
Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLED--------------------- 381

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  E I    SG DGF+   L R+
Sbjct: 382 -------ETISPADSGFDGFYLAKLERI 402


>gi|261419971|ref|YP_003253653.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC61]
 gi|319766785|ref|YP_004132286.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC52]
 gi|261376428|gb|ACX79171.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC61]
 gi|317111651|gb|ADU94143.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC52]
          Length = 454

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 24/310 (7%)

Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             +PE F  +++       +   A+ +           +K D   WA      + P    
Sbjct: 1   MRLPEAFVAKMKKLLDEEADEFFAVYENEKINGLRVNPLKTDPGAWAKTAPFSLSPVPFC 60

Query: 204 RLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 E        P  A G++++Q+ SA    +        +VLDLCAAPGGKT Q  
Sbjct: 61  PTGFYYEPDEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGETVLDLCAAPGGKTTQLG 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
            ++ +   + A ++  +R++ L  N++R  L    ++         +    FD +LVDAP
Sbjct: 121 AMMENKGLLVANEIHPKRVKALAENVERFGLTNTVVVNETPEALAERFPGFFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+  +         + + A  QR++L    + +K GGI+V+S C+   +++E+
Sbjct: 181 CSGEGMFRKDEEAASFWSPAYVEECAARQRRILESAYAMLKEGGILVYSTCTFSPEENEQ 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGM 430
            ++ +L +    + L+P+  A                      R+ P  L+         
Sbjct: 241 TIEWLLEAH-DDLRLLPIAKAGGLEPGQPEWTKTNRSDLIHAARLWPHRLKGE------- 292

Query: 431 DGFFAVALRR 440
            G F   L++
Sbjct: 293 -GHFVAKLQK 301


>gi|294086051|ref|YP_003552811.1| tRNA/rRNA cytosine-C5-methylase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665626|gb|ADE40727.1| tRNA/rRNA cytosine-C5-methylase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 448

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 152/460 (33%), Gaps = 37/460 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+ +   +   M         L        +      D+  +  +     R  
Sbjct: 1   MTP--AARIAAVIEILQDMPDGQLAGQGLRAGMQRRRYAG--SGDRAAISTLFWQVQRAR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRV-----SVAQILYLDV----ADYAVVDLAVEQA 111
            RID  LD +    +  +   +  L+ +     ++A + + D           +     A
Sbjct: 57  ARIDWHLDAIAA-DISPRNQVIAALVMIDQQHENLAHL-FTDTITHAPPALNDNEQAMAA 114

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
              +     AK+   +        +E  +      I  +   E        E    +   
Sbjct: 115 NLAERTLDDAKMPVDVALEWPEFLLEDARTAISRVIDDKQSVEAELAALLDEAPTDLRIN 174

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
            I      L                + P G    K        L  + +G + +QD  + 
Sbjct: 175 PIKLDDRRLLRDRLAGRGIKCYATSLSPWGVRLAKRTRTD--ELQEWKKGQFDIQDEGSQ 232

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           I   L      + V D+CA  GGK    A  + +  +V A+D S  RLE+    L R  +
Sbjct: 233 IAALLCDARPGMQVADVCAGAGGKSLVMAARMQNKGRVLAIDSSAERLERSGERLRRAGI 292

Query: 289 YAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  +   +D        +  FD V++DAPCS +GT RR  D  W    D + +    Q+ 
Sbjct: 293 HNVERKAVDDKWGTRKWRAKFDRVVIDAPCSGSGTWRRQVDARWRLTPDILARYQATQQG 352

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP-------IPVELVPLNSAYWK 399
           LL +  + V PGG +++  CSL   + E  +   +  +P         +    +      
Sbjct: 353 LLEKARAMVLPGGRIIYITCSLLASECEAQIAAFMADAPELEMADIGDIWDDTIGRLNGG 412

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +      L+  G +R+ P             DGFF   ++
Sbjct: 413 ACPQTATLNASGMLRLLP--------RRDNTDGFFIAIIQ 444


>gi|213419467|ref|ZP_03352533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 207

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 27/229 (11%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRR 275
           FAEG   VQDASA          N   +LDLCAAPGGKT     +   A V A+D+ ++R
Sbjct: 1   FAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQR 60

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           L ++  NL RL + A  + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R
Sbjct: 61  LSRVYDNLKRLGMKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLR 119

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              DI + A  Q ++L      +KPGG +V++ CS+  +++ + ++  L+ +P       
Sbjct: 120 RDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSET 179

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    ++      EG                   DGFF   L + 
Sbjct: 180 GTPDQPGQQNLPGG--EEG-------------------DGFFYAKLIKK 207


>gi|315648477|ref|ZP_07901576.1| Fmu (Sun) domain protein [Paenibacillus vortex V453]
 gi|315276171|gb|EFU39517.1| Fmu (Sun) domain protein [Paenibacillus vortex V453]
          Length = 537

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 27/266 (10%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +L  +   + G  +++        P +  G++++Q+ SA  PV+L G      VLDLCAA
Sbjct: 55  ELEPIPWCSTGFYIRDGERP-GRHPYYHAGLYYIQEPSAMAPVELLGVAPGDIVLDLCAA 113

Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
           PGGK+ Q+         + + D+   R + L  NL+   +    ++  D           
Sbjct: 114 PGGKSTQIAAKLKGEGVLVSNDLHPDRTKALAKNLEMYGVRNAVVLNEDPERIAGAFPRF 173

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           F  +L+DAPCS  G  R+   +L   +    +K A  QR++L      + PGG +V+S C
Sbjct: 174 FTKILIDAPCSGEGMFRKDESMLKYWEESSPLKFAEMQREILTSAAKMLTPGGRLVYSTC 233

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------R 414
           +   +++E ++ + L +      LVP+  + + S      L+ +G +            R
Sbjct: 234 TFSPEENEGMIAEFLNNH-QDFRLVPVEHSDYFSPGETKWLTGQGHVGDDVLIQLTGTAR 292

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           + P  ++          G F   L+R
Sbjct: 293 LWPHKVKGE--------GHFMAVLQR 310


>gi|294887892|ref|XP_002772268.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus
           marinus ATCC 50983]
 gi|239876343|gb|EER04084.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus
           marinus ATCC 50983]
          Length = 658

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/323 (23%), Positives = 126/323 (39%), Gaps = 29/323 (8%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVML 198
            A      E     + + +     + + +A   P  + +    +K      A +L A   
Sbjct: 229 CANYYGYNEELAAYILDMFAPGEAVQLFEANDRPRPMTIRANTIKTRRRLLAQQLIARGC 288

Query: 199 PTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                                I + P +  G + +Q AS+ +PVQ        +VLD+ A
Sbjct: 289 QVEPTGEWTKVGLTVKESKVPIGATPEYLSGRYMLQSASSFVPVQALNAQPGETVLDMSA 348

Query: 251 APGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KL 306
           APGGKT     ++ +   + A D+ + R   L  N+ RL L    +  MD          
Sbjct: 349 APGGKTTYIGQMMQNQGVLFANDLREDRCTALIANVHRLGLSNVVVTAMDGRKLKDMLPK 408

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-------PGG 359
            D VL+DAPCS +G I R P +   R+  +  + A  QR+LLL  I  V         GG
Sbjct: 409 LDRVLLDAPCSGSGIIARDPKIKVKRNVKEFTEHAALQRELLLSAIDMVDADTKTTGEGG 468

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD- 418
           +VV+S CS+  ++ E V+  +L++  + V        +      +   +     +  P  
Sbjct: 469 VVVYSTCSMAVEEDEMVIDAILKARNVRVVAFDDVVNFG-----SEGFTSFRGKQFHPSL 523

Query: 419 -MLEKIDGVSSGMDGFFAVALRR 440
               +       MDGFF   L++
Sbjct: 524 KHSRRFFPHVHNMDGFFVCKLQK 546


>gi|190344542|gb|EDK36232.2| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 641

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L N +     +   +A      + +            A +L    + 
Sbjct: 266 CEYFGYSEFLAEKLFNLFSPSEAMEFFEANEIARPVTIRTNTLKSRRRDLAQRLVNRGVN 325

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 326 LQPIGAWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALQPQENERILDMAAA 385

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 386 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 445

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 446 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTGGVIVY 505

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+LV       K        +       +P   +  
Sbjct: 506 STCSVAVDENEAVVDYALRKRPN-VKLVDTELQIGK-----EGFTSYRGKNFSPKLSLTR 559

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGFF    +++ 
Sbjct: 560 RYYPHTYNVDGFFVAKFKKIA 580


>gi|146422021|ref|XP_001486953.1| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 641

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L N +     +   +A      + +            A +L    + 
Sbjct: 266 CEYFGYSEFLAEKLFNLFSPSEAMEFFEANEIARPVTIRTNTLKSRRRDLAQRLVNRGVN 325

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 326 LQPIGAWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALQPQENERILDMAAA 385

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 386 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 445

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 446 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTGGVIVY 505

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+LV       K        +       +P   +  
Sbjct: 506 STCSVAVDENEAVVDYALRKRPN-VKLVDTELQIGK-----EGFTSYRGKNFSPKLSLTR 559

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGFF    +++ 
Sbjct: 560 RYYPHTYNVDGFFVAKFKKIA 580


>gi|126090208|ref|YP_001041689.1| hypothetical protein Sbal_4571 [Shewanella baltica OS155]
 gi|126174501|ref|YP_001050650.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS155]
 gi|217973468|ref|YP_002358219.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS223]
 gi|125997706|gb|ABN61781.1| Fmu (Sun) domain protein [Shewanella baltica OS155]
 gi|125999864|gb|ABN63934.1| hypothetical protein Sbal_4571 [Shewanella baltica OS155]
 gi|217498603|gb|ACK46796.1| Fmu (Sun) domain protein [Shewanella baltica OS223]
          Length = 404

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 139/448 (31%), Gaps = 72/448 (16%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +       LR L      L 
Sbjct: 12  ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALTTGDILRRLNLYCY-LA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +    + R    L          + + L++                         +   
Sbjct: 68  EISPDEMERFGSKLLN-----AWHLFHGLELPKMQ-------------------YSLQVD 103

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
             R++    +   +       PEW  + +      E       A  +     L       
Sbjct: 104 EARLAERTEQAKTKPVLWDGCPEWL-DAMGREQLGESWEKERAALSTAPKRFLRANGLKV 162

Query: 185 DIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             E  A KL A       +             ++     F +G++  QDA +        
Sbjct: 163 TREELAAKLAAEFVSTLSVDGVDSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALD 222

Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DI 293
               + V+D CA  GGKT      +    ++ A+DV + +L+KL+    R   +     +
Sbjct: 223 AKPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAHNVETRV 282

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           I         K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L     
Sbjct: 283 IASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTVERLPVLMELQKHILTSYSR 342

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VK GGIVV++ CS+   ++   V   L  +P    +                       
Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLIED--------------------- 381

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  E I    SG DGF+   L R+
Sbjct: 382 -------ESISPADSGFDGFYLAKLERI 402


>gi|297530072|ref|YP_003671347.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. C56-T3]
 gi|297253324|gb|ADI26770.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. C56-T3]
          Length = 454

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 24/310 (7%)

Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             +PE F  +++       +   A+ +           +K D   WA      + P    
Sbjct: 1   MRLPEAFVAKMKKLLDEEADEFFAVYENEKINGLRVNPLKTDPGAWAKTAPFSLSPVPFC 60

Query: 204 RLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 E        P  A G++++Q+ SA    +        +VLDLCAAPGGKT Q  
Sbjct: 61  LTGFYYEPDEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGETVLDLCAAPGGKTTQLG 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
            ++ +   + A ++  +R++ L  N++R  L    ++         +    FD +LVDAP
Sbjct: 121 AMMENKGLLVANEIHPKRVKALAENVERFGLTNTVVVNETPEALAERFPGFFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+  +         + + A  QR++L    + +K GGI+V+S C+   +++E+
Sbjct: 181 CSGEGMFRKDEEAASFWSPAYVEECAARQRRILESAYAMLKEGGILVYSTCTFSPEENEQ 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGM 430
            ++ +L +    + L+P+  A                      R+ P  L+         
Sbjct: 241 TIEWLLEAH-DDLRLLPIAKAGGLEPGRPEWTKTNRSDLVHAARLWPHRLKGE------- 292

Query: 431 DGFFAVALRR 440
            G F   L++
Sbjct: 293 -GHFVAKLQK 301


>gi|260944772|ref|XP_002616684.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
 gi|238850333|gb|EEQ39797.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
          Length = 599

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 127/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L N +     +   +A      I +            A  L    + 
Sbjct: 224 CEYFGYSEFLAEKLFNLFSPSEAMEFFEANEVARPITIRTNTLKTRRRDLAQTLVNRGVN 283

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  VLD+ AA
Sbjct: 284 LQPIGAWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERVLDMAAA 343

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 344 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIQRLGCKNTIVCHYDAREFPKVIGGF 403

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 404 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSPTGGVIVY 463

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+LV       K        +     R  P   M  
Sbjct: 464 STCSIAVDENEAVVDYALRKRPN-VKLVETGLQIGK-----EGFTSYRGKRFNPKISMTR 517

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGF+    +++ 
Sbjct: 518 RYYPHTYNVDGFYVAKFKKIA 538


>gi|238879878|gb|EEQ43516.1| nucleolar protein NOP2 [Candida albicans WO-1]
          Length = 618

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  ++L N +     +   +A      I +            A  L    + 
Sbjct: 240 CEYFGYSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVN 299

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 300 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAA 359

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 360 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 419

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 420 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVY 479

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+LV       K        +        P   +  
Sbjct: 480 STCSIAVDENEAVVDYALRKRPN-VKLVDTGLTIGK-----EGFTSYRGKHFNPKISLTR 533

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGF+    +++ 
Sbjct: 534 RYYPHTYNVDGFYVAKFKKIA 554


>gi|241958522|ref|XP_002421980.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36]
 gi|223645325|emb|CAX39981.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36]
          Length = 620

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  ++L N +     +   +A      I +            A  L    + 
Sbjct: 242 CEYFGYSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVN 301

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 302 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAA 361

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 362 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 421

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 422 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVY 481

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+LV       K        +        P   +  
Sbjct: 482 STCSIAVDENEAVVDYALRKRPN-VKLVDTGLTIGK-----EGFTSYRGKHFNPKISLTR 535

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGF+    +++ 
Sbjct: 536 RYYPHTYNVDGFYVAKFKKIA 556


>gi|68476951|ref|XP_717453.1| hypothetical protein CaO19.8131 [Candida albicans SC5314]
 gi|68477142|ref|XP_717364.1| hypothetical protein CaO19.501 [Candida albicans SC5314]
 gi|46439073|gb|EAK98395.1| hypothetical protein CaO19.501 [Candida albicans SC5314]
 gi|46439166|gb|EAK98487.1| hypothetical protein CaO19.8131 [Candida albicans SC5314]
          Length = 618

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  ++L N +     +   +A      I +            A  L    + 
Sbjct: 240 CEYFGYSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVN 299

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 300 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAA 359

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 360 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 419

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 420 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVY 479

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+LV       K        +        P   +  
Sbjct: 480 STCSIAVDENEAVVDYALRKRPN-VKLVDTGLTIGK-----EGFTSYRGKHFNPKISLTR 533

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGF+    +++ 
Sbjct: 534 RYYPHTYNVDGFYVAKFKKIA 554


>gi|154303546|ref|XP_001552180.1| hypothetical protein BC1G_09344 [Botryotinia fuckeliana B05.10]
 gi|150854655|gb|EDN29847.1| hypothetical protein BC1G_09344 [Botryotinia fuckeliana B05.10]
          Length = 718

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 134/322 (41%), Gaps = 33/322 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                  E+  E+L N +  +   A  +A  +P  + +    ++      A  L    + 
Sbjct: 273 CAYYGYSEFLAEKLFNLFPPKEAYAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVV 332

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  VLD+ +A
Sbjct: 333 LEPVGKWSKVGLQIFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASA 392

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   + A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 393 PGGKTTHIAALMKNTGCIFANDSNKSRAKGLIGNIHRLGAKNVIVCNYDAREFPRVIGGF 452

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V   +   D +     Q++LLL  I  V    K GG +V+
Sbjct: 453 DRVLLDAPCSGTGVIAKDASVKTNKTERDFLMLPHLQKQLLLSAIDSVDHASKTGGYIVY 512

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS-----IDMAMALSPEGWIRITPD 418
           S CS+  +++E+VVQ VL   P  V+LV    A+ K      +  +   + +   R  P 
Sbjct: 513 STCSVTVEENEQVVQYVLNKRPN-VKLVETGLAFGKEGFTSYMGKSFDKNMKMTRRYYPH 571

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
                      +DGFF    ++
Sbjct: 572 AY--------NVDGFFVSKFKK 585


>gi|323706599|ref|ZP_08118147.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534054|gb|EGB23857.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 455

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 113/253 (44%), Gaps = 18/253 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                       +          G++++Q+ SA   V+    +    VLDL AAPGGK+ 
Sbjct: 60  PWCDTGFYYNQDDKPGKHYYHDVGLYYIQEPSAMAVVEALNPMPGDMVLDLSAAPGGKST 119

Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
            +         + + +++ +R++ L  N++R+ +    I+    +  +    ++FD +LV
Sbjct: 120 HIASKLKGEGLLVSNEINSKRVKVLAENIERMGIRNVVILNESPERLENKFARVFDKILV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+    +     ++++  +  Q+K+L    + +KPGGI+V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDEIAINEWSLENVLSCSLRQKKILDSAANMLKPGGIMVYSTCTFSPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSS 428
           +E V+   L++     EL+ + +           ++     +  +R+ P +++       
Sbjct: 240 NEGVIDYFLKNH-SDFELIEIYNHEGFDNGHPEWVNGCSDLKKCVRLWPHLIKGE----- 293

Query: 429 GMDGFFAVALRRL 441
              G F   LR+ 
Sbjct: 294 ---GHFITKLRKK 303


>gi|94502186|ref|ZP_01308683.1| sun protein [Oceanobacter sp. RED65]
 gi|94425689|gb|EAT10700.1| sun protein [Oceanobacter sp. RED65]
          Length = 234

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 22/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVT 267
           ++  LPGF+ G   VQD +A +  Q+        +LD C APGGKT  L+ +     K+T
Sbjct: 15  NVSELPGFSLGSCSVQDEAAQLAAQIMKPKEGELILDACCAPGGKTGHLLEASQGLAKIT 74

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325
           ALD   +RL+++  NL+RL   A+ +        ++   + FD +L+D PCS+TG IRRH
Sbjct: 75  ALDSDAKRLQRVHENLERLGYTAKVLQGEAQAPENWWDGQAFDGILLDVPCSATGVIRRH 134

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           PD+   R  +DI   A  Q+ +L +  + +KPGG ++++ CS+ + +++  ++  L++ P
Sbjct: 135 PDIKLLRQREDIDNLAQLQQAILSKAWTLLKPGGRLLYATCSVTQAENQNNIEAFLQTHP 194

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     +    +     L  +   +  PD   +        DGFF   LR+
Sbjct: 195 D---------SELVQLHFNTGLDTKYGWQFFPDKNAQ--------DGFFYALLRK 232


>gi|146296789|ref|YP_001180560.1| NOL1/NOP2/sun family RNA methylase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410365|gb|ABP67369.1| putative RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 455

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 14/253 (5%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
             +              +   P +  G+ ++Q+ SA  PV+         VLDLCAAPGG
Sbjct: 55  EKVPWCEDGFYINDEIRLSKHPYYFAGLIYIQEPSAMFPVEALDVKEGEKVLDLCAAPGG 114

Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDA 309
           KT Q    I     + + DV   R++ L  N++ L L    I+     +        FD 
Sbjct: 115 KTIQIAAKIGPNGMLVSNDVKPTRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFDK 174

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +LVDAPCS  G  R+ P       ++   K    QR ++ +    +K GG +V+S C+ +
Sbjct: 175 ILVDAPCSGEGMFRKDPTSAKKWTSNHPQKYVNLQRSIMTEVDELLKVGGEIVYSTCTFE 234

Query: 370 KQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
            +++E ++   L+      V  +     +   +++   L  +  +RI P  ++       
Sbjct: 235 PEENEGIIDWFLKKHKNYEVVEIKKYPGFSDGLEINGNLELKKTVRIYPHKVKGE----- 289

Query: 429 GMDGFFAVALRRL 441
              G F   L+++
Sbjct: 290 ---GHFVCKLKKV 299


>gi|188533653|ref|YP_001907450.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia tasmaniensis
           Et1/99]
 gi|254766866|sp|B2VJ83|RSMF_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|188028695|emb|CAO96557.1| Conserved hypothetical protein YebU [Erwinia tasmaniensis Et1/99]
          Length = 478

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 123/266 (46%), Gaps = 21/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241
           E +   L  +     G  +         + S      G++++Q+AS+ +PV         
Sbjct: 59  EPYQWALTPIPWCQEGFWISRDDADTLPLGSTAEHLAGLFYIQEASSMLPVSALFDGGDM 118

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              V+D+ AAPG KT Q    + +   + A + S  R++ L  NL R  +    +   D 
Sbjct: 119 PQRVMDMAAAPGSKTTQIAAHMGNRGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDG 178

Query: 299 FDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             + P   + FDAVL+DAPCS  G +R+  D L         + A  Q+ L+      ++
Sbjct: 179 RVFGPALPECFDAVLLDAPCSGEGVVRKDADALRNWSQSSTEEIAATQQALINSAFHALR 238

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S C+L+ +++++VV  +L   P  V++ PL++ +   +    A + EG++ + 
Sbjct: 239 PGGTLVYSTCTLNTRENQQVVNGLLEQYPDAVKVEPLDTLF---MGAERATTAEGYLHVF 295

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P + +          GFF   LR++ 
Sbjct: 296 PHIFDSE--------GFFVARLRKVA 313


>gi|167629053|ref|YP_001679552.1| nol1/nop2/sun family putative RNA methylase [Heliobacterium
           modesticaldum Ice1]
 gi|167591793|gb|ABZ83541.1| nol1/nop2/sun family putative RNA methylase [Heliobacterium
           modesticaldum Ice1]
          Length = 503

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 118/305 (38%), Gaps = 25/305 (8%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PT 200
            +P  F  R+     +    A  ++  S     L +     + A  L  +          
Sbjct: 3   PLPPPFINRMTALLLESERNAFFESYESGPVQGLRLNPLKLSRAEFLAIMPFRLDPVAWC 62

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
                 +  E     P  A G++++Q+ SA   V+         VLDLCAAPGGK  Q+ 
Sbjct: 63  PTGFYVDGEERPGKHPFHAAGLYYIQEPSAMAVVEALDPQPGERVLDLCAAPGGKATQIA 122

Query: 261 VS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAP 315
                   + A ++  +R++ L  NL+R       + +   +         FD ++VDAP
Sbjct: 123 GRLAGRGLLVANEIHPKRVKALSENLERWGARNILVTQESPERLAGRFIADFDRIVVDAP 182

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P+ +     + + + A  QR+LL      ++PGG++V+S C+   +++E 
Sbjct: 183 CSGEGMFRKLPEAMDDWSEEKVFRCAAMQRELLPLAARMLRPGGVLVYSTCTFAPEENER 242

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            ++  LR      E     +    +         E   R+ P  L           G F 
Sbjct: 243 QIEAFLRDH-REFERESFPAMEHFATGYL-----EKTARLWPHRLRGE--------GHFI 288

Query: 436 VALRR 440
             LR+
Sbjct: 289 ARLRK 293


>gi|257096808|sp|A7MKH5|RSMF_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 480

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +  +L  V     G  ++   E    + S      G +++Q+AS+ +PV           
Sbjct: 61  YGWQLTPVPWCPEGFWIERDDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPA 120

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  ++   +   D   
Sbjct: 121 RVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIHNVGLTHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L         + A  QR+L+      + PG
Sbjct: 181 FGAALPEQFDAILLDAPCSGEGVVRKDPDALRNWSPQSDQEIAATQRELIDSAFHALAPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++E V+ +L   P  VE++ L + +        AL+ EG++ + P 
Sbjct: 241 GTLVYSTCTLNREENQETVRWLLARYPQAVEVLSLEALFP---GADAALTEEGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDCE--------GFFVARLRKTA 313


>gi|262041948|ref|ZP_06015131.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040754|gb|EEW41842.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 477

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 124/264 (46%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +  +L  V     G  ++   +    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWQLAPVPWCAEGFWIEREDDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNRQPE 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DA CS  G +R+  D L     +  +  A  QR+L+      ++PG
Sbjct: 180 FGAALPETFDAILLDATCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++ V++ +L   P  VE++PL   +  + D    L+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENQSVIEWLLSRYPQAVEILPLGELFPGAADT---LTAEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 297 IYDCE--------GFFVARLRKTA 312


>gi|119774800|ref|YP_927540.1| tRNA and rRNA cytosine-C5-methylase [Shewanella amazonensis SB2B]
 gi|119767300|gb|ABL99870.1| tRNA and rRNA cytosine-C5-methylase [Shewanella amazonensis SB2B]
          Length = 416

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 144/449 (32%), Gaps = 70/449 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L           +   L   +Q  +  +    +R L     + D
Sbjct: 24  ELVLGILNQVLMEGSPLDRA---YSRHFSGLKLESEEQARIATVTGELIRRLNLFCFLAD 80

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                 + R+   +      +  +   L +          E    ++  R  A+ +    
Sbjct: 81  T-TPERIEREGSRVLN----AWHRFHGLPIPRLRYTLDIEEAVFAERLERAKAEPL---- 131

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185
                               P+W  ++L      +   A   A        L        
Sbjct: 132 ---------------LWDGCPDWL-DKLGQAELGDTWAAERAALSLAPKRYLRTNGLKCT 175

Query: 186 IETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            +  A +L A  + T                ++     FA+G +  QDA + +       
Sbjct: 176 RDELATRLAAEGVQTVPVDGVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDV 235

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
              + V+D CA  GGKT      +    ++ A+DV + +L+ L+    R   +  +    
Sbjct: 236 KPGMRVIDACAGAGGKTLHLAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLI 295

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                    K   D +L+D PCS  G ++R+PD  W    + +      Q  +L      
Sbjct: 296 AGSKTIKRLKLSADRLLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRM 355

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GGI+V++ CS+   ++   V   L ++P    L   N                    
Sbjct: 356 VKVGGILVYATCSIMPCENRGQVDAFLAANPNFRLLEDEN-------------------- 395

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                   I   +SG DGF+   L R+ +
Sbjct: 396 --------ITPATSGFDGFYLAKLERIAE 416


>gi|153000565|ref|YP_001366246.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS185]
 gi|304408637|ref|ZP_07390258.1| Fmu (Sun) domain protein [Shewanella baltica OS183]
 gi|307305466|ref|ZP_07585214.1| Fmu (Sun) domain protein [Shewanella baltica BA175]
 gi|151365183|gb|ABS08183.1| Fmu (Sun) domain protein [Shewanella baltica OS185]
 gi|304352458|gb|EFM16855.1| Fmu (Sun) domain protein [Shewanella baltica OS183]
 gi|306911769|gb|EFN42194.1| Fmu (Sun) domain protein [Shewanella baltica BA175]
          Length = 404

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 139/448 (31%), Gaps = 72/448 (16%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +       LR L      L 
Sbjct: 12  ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALTTGDILRRLNLYCY-LA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +    + R    L          + + L++                         +   
Sbjct: 68  EISPDEMERFGSKLLN-----AWHLFHGLELPKMQ-------------------YSLQVD 103

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184
             R++    +   +       PEW  + +      E       A  +     L       
Sbjct: 104 EARLAERTEQAKTKPVLWDGCPEWL-DAMGREQLGESWEKERAALSTAPKRFLRANGLKV 162

Query: 185 DIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
             +  A KL A       +             ++     F +G++  QDA +        
Sbjct: 163 TRDELAAKLAAEFVSTLSVDGVDSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALD 222

Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DI 293
               + V+D CA  GGKT      +    ++ A+DV + +L+KL+    R   +     +
Sbjct: 223 AKPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAHNVETRV 282

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           I         K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L     
Sbjct: 283 IASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTVERLPVLMELQKHILTSYSR 342

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            VK GGIVV++ CS+   ++   V   L  +P    +                       
Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLIED--------------------- 381

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  E I    SG DGF+   L R+
Sbjct: 382 -------ESISPADSGFDGFYLAKLERI 402


>gi|332530506|ref|ZP_08406447.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624]
 gi|332040075|gb|EGI76460.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624]
          Length = 469

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 119/459 (25%), Positives = 173/459 (37%), Gaps = 64/459 (13%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRK 78
           R   S +  ++               +  V+A+    LR L R +A+   +     +P  
Sbjct: 34  RAGRSASDAIEAVAAGL---------RPGVQALAYAALRGLGRAEALRALLAPRKPVPAV 84

Query: 79  KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD--KENRHFAKLVNSILRRVSREKI 136
              L   L ++  Q    D   + +V+ AVE AKR   +   + A  +N+ LRR  RE++
Sbjct: 85  DALLCLALALASTQAQ--DYDAHTLVNQAVEAAKRHGSRSVSNSAGFLNACLRRFLRERV 142

Query: 137 ELLQRIAG--------ISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKFDI- 186
           +LL  I              P W+ ERL           +      P   + + +     
Sbjct: 143 DLLADIDEDPATALVARWNHPRWWIERLRQEAPAHWQAVLDANNNPPPLTLRVNLAQGPV 202

Query: 187 ETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD--------ASASIPV 234
           ET+   L     A           E P  +  +PGFA+G   VQD               
Sbjct: 203 ETYLADLQVAGLAAWRNGAQGVTLEQPLPVHRIPGFAQGRVSVQDAAAQLAAPLLLDDLP 262

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ------LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                   + VLD CAAPGGKTA            A+V ALDV   R  ++  NL RL L
Sbjct: 263 AARTPGRPIRVLDACAAPGGKTAHLLELIAARGLDAEVIALDVDAERCRRIDENLQRLGL 322

Query: 289 YAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
            A+ +                    FDA+L+DAPC+++G +RRHPDV W R   DI   A
Sbjct: 323 RAQVVAADAGQAAAWRAAGLGDDLRFDAILLDAPCTASGIVRRHPDVRWLRRESDIANLA 382

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
             Q +LL      + PGG +++  CS+ K + EE V   L        L P     W   
Sbjct: 383 RQQARLLAALWPRLLPGGRMLYCTCSVFKAEGEEQVLAFLA-HNKEASLRPAPGHLWPHS 441

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +      +  IR              G DGF+   L +
Sbjct: 442 AIQSEALTDNAIR--------------GHDGFYYALLSK 466


>gi|156933592|ref|YP_001437508.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531846|gb|ABU76672.1| hypothetical protein ESA_01414 [Cronobacter sakazakii ATCC BAA-894]
          Length = 464

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +  +L  V     G  ++   E    + S      G +++Q+AS+ +PV           
Sbjct: 45  YGWQLTPVPWCPEGFWIERDDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPA 104

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  ++   +   D   
Sbjct: 105 RVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIHNVGLTHFDGRV 164

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L         + A  QR+L+      + PG
Sbjct: 165 FGAALPEQFDAILLDAPCSGEGVVRKDPDALRNWSPQSDQEIAATQRELIDSAFHALAPG 224

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++E V+ +L   P  VE++ L + +        AL+ EG++ + P 
Sbjct: 225 GTLVYSTCTLNREENQETVRWLLARYPQAVEVLSLEALFP---GADAALTEEGFLHVFPQ 281

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 282 IYDCE--------GFFVARLRKTA 297


>gi|56420302|ref|YP_147620.1| hypothetical protein GK1767 [Geobacillus kaustophilus HTA426]
 gi|56380144|dbj|BAD76052.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 454

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 24/310 (7%)

Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             +PE F  +++       +   A+ +           +K D   WA      + P    
Sbjct: 1   MRLPEAFVAKMKKLLDEEADEFFAVYENEKINGLRVNPLKTDPGAWAKTAPFSLSPVPFC 60

Query: 204 RLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 E        P  A G++++Q+ SA    +         VLDLCAAPGGKT Q  
Sbjct: 61  PTGFYYEPDEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGERVLDLCAAPGGKTTQLG 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
            ++ +   + A ++  +R++ L  N++R  L    ++         +    FD +LVDAP
Sbjct: 121 AMMENKGLLVANEIHPKRVKALAENVERFGLTNTVVVNETPEALAEQFPGFFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+  +         + + A  QR++L    + +K GGI+V+S C+   +++E+
Sbjct: 181 CSGEGMFRKDEEAASFWSPAYVEECAARQRRILESAYAMLKEGGILVYSTCTFSPEENEQ 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGM 430
            ++ +L +    + L+P+  A                      R+ P  L+         
Sbjct: 241 TIEWLLETY-DDLRLLPIAKAGGLEPGRPEWTKTNRSDLVHAARLWPHRLKGE------- 292

Query: 431 DGFFAVALRR 440
            G F   L++
Sbjct: 293 -GHFVAKLQK 301


>gi|308187115|ref|YP_003931246.1| rRNA methyltransferase F [Pantoea vagans C9-1]
 gi|308057625|gb|ADO09797.1| putative rRNA methyltransferase F [Pantoea vagans C9-1]
          Length = 460

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             +  +L  V     G  +    E   + S+     G++++Q+AS+ +PV          
Sbjct: 43  AGYDWQLTPVPWCDEGFWISREDESLPLGSVAEHLSGLFYIQEASSMLPVTALFDAQPEV 102

Query: 245 --VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   DA 
Sbjct: 103 SAVMDMAAAPGSKTTQIAARMGNQGVILANEFSSSRVKVLHANISRCGVSNSALTHFDAR 162

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            + P     FDA+L+DAPCS  G IR+  D L         + A  QR LL      +KP
Sbjct: 163 VFGPALPEQFDAILLDAPCSGEGVIRKDADALKNWSLASTEEIAATQRDLLDSAFHALKP 222

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            G +V+S C+L++ ++++V+  +L+  P  VE+VPL+  +        A +PEG++ + P
Sbjct: 223 SGTLVYSTCTLNQIENQQVIDWLLQRYPDAVEVVPLDGLFE---GAERAATPEGYLHVFP 279

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            M +          GFF   LR+  
Sbjct: 280 QMFDSE--------GFFVARLRKTA 296


>gi|309363032|emb|CAP27286.2| CBR-NOL-1 protein [Caenorhabditis briggsae AF16]
          Length = 678

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           A      G+ + +    + + P +  G + +Q  ++ +PV          VLD+C+APGG
Sbjct: 271 AAEWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 330

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309
           KT+ +   + +   + A D S  R   +  NL RL +    +  +   ++   K   FD 
Sbjct: 331 KTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGEEFSKIKPNGFDR 390

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSN 365
           +L+DAPCS TG I +   V  ++D+ D+ +    QR+L+L  +  +      GG +V+S 
Sbjct: 391 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLDANSPNGGYLVYST 450

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKI 423
           CS+  +++E VV  +L       ELVP   A           +     R  P   M ++ 
Sbjct: 451 CSVLVEENEAVVNFLLERRHC--ELVPTGLAIGV-----DGYTRFRDYRFHPSLSMTKRY 503

Query: 424 DGVSSGMDGFFAVALRRL 441
                 +DGF+   +++L
Sbjct: 504 YPHVHNIDGFYVAKIKKL 521


>gi|268534138|ref|XP_002632199.1| C. briggsae CBR-NOL-1 protein [Caenorhabditis briggsae]
          Length = 664

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           A      G+ + +    + + P +  G + +Q  ++ +PV          VLD+C+APGG
Sbjct: 258 AAEWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 317

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309
           KT+ +   + +   + A D S  R   +  NL RL +    +  +   ++   K   FD 
Sbjct: 318 KTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGEEFSKIKPNGFDR 377

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSN 365
           +L+DAPCS TG I +   V  ++D+ D+ +    QR+L+L  +  +      GG +V+S 
Sbjct: 378 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLDANSPNGGYLVYST 437

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKI 423
           CS+  +++E VV  +L       ELVP   A           +     R  P   M ++ 
Sbjct: 438 CSVLVEENEAVVNFLLERRHC--ELVPTGLAIGV-----DGYTRFRDYRFHPSLSMTKRY 490

Query: 424 DGVSSGMDGFFAVALRRL 441
                 +DGF+   +++L
Sbjct: 491 YPHVHNIDGFYVAKIKKL 508


>gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 323

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 135/325 (41%), Gaps = 11/325 (3%)

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             ++ +       R  +        ++ +     ERL       R    ++  +      
Sbjct: 3   LPEIDDRCHELAERYGVRPYMVARYLTFLGRSETERLLKHMEDIRPAIRTNTILIDPEEL 62

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
             V  +   +  K     +  G   L + P SI +   +  G +  QDA++ +P  +   
Sbjct: 63  RRVLEEKRGFELKRCPEPVDVGFWILNDPPISIGATLEYMMGYYVPQDAASMLPPVVLDP 122

Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                VLD CAAPGGKT  L   + +   + A+DV   R+  L+ NL R  +     + M
Sbjct: 123 KPGDRVLDACAAPGGKTTHLAQLMDNEGTLIAIDVDPDRMRALKSNLARCGVANAVALRM 182

Query: 297 DAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
           +A D       FD +L+DAPC+  GTI + P    +RD +DI   A  QR+L+   +  +
Sbjct: 183 NALDLPSTDWEFDRILLDAPCTGEGTIHKDPSRKTSRDPEDIATCARLQRRLIDAVVDVL 242

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +PGG++V+S C+   +++E +VQ  +    +  E V +    W    + +        R 
Sbjct: 243 RPGGVLVYSTCTFSPEENELIVQYAVDEHGLEPEPVDVG---WADRGLRVPGVEPKVRRT 299

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                 ++     GM  FF   LR+
Sbjct: 300 ----CARLYPHRHGMGIFFVARLRK 320


>gi|323487165|ref|ZP_08092470.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
 gi|323692320|ref|ZP_08106559.1| fmu domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323399517|gb|EGA91910.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
 gi|323503645|gb|EGB19468.1| fmu domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 461

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 120/309 (38%), Gaps = 22/309 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTV-KFDIETWAHK---LNAVMLPT 200
             +P  F+ER++   G E    +          + L + K   E +  K   +   +   
Sbjct: 1   MELPLPFRERMKQMLGDEYGEFLESYDRERSQGLRLNLLKTGREEFLAKTSFMLEPIPWA 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
                 +  +     P    GV+++Q+ SA   V          VLDLCAAPGGKT Q+ 
Sbjct: 61  ESGFYYQPQDRPGRHPYHEAGVYYIQEPSAMAVVSFLDPQPGEKVLDLCAAPGGKTTQIA 120

Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
                   + + ++   R   L  N++R+ +    +   D+          FD + VDAP
Sbjct: 121 SRLQGKGFLLSNEIHPARARILSQNVERMGVRNAVVTNEDSGRLAEYFPEFFDRIAVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+  + +    T+++   A  Q+++L      +K GG +V+S C+   Q++E 
Sbjct: 181 CSGEGMFRKDEEAVREWSTENVEHCALRQQEILANAARMLKAGGRLVYSTCTFAPQENEM 240

Query: 376 VVQKVLRSSPIP-VELVPLNSAYWKSI---DMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
            V+  +   P   +E  P+       +       A   E  +RI P              
Sbjct: 241 AVETFIAGHPEFTIEETPVYEGLSSGVREWGNGSAAGIENTVRIWPHRTRGE-------- 292

Query: 432 GFFAVALRR 440
           G F   LR+
Sbjct: 293 GHFIAVLRK 301


>gi|295400402|ref|ZP_06810381.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977677|gb|EFG53276.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 463

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 110/253 (43%), Gaps = 19/253 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E     P  A G++++Q+ SA    ++       +VLDLCAAPGGKT 
Sbjct: 66  PFCPTGFYYDGGEQPGKHPYHAAGLYYIQEPSAMFVAEVLAPNPGETVLDLCAAPGGKTT 125

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           Q   ++ +   + A ++  +R++ L  N++R  +    +               FD +LV
Sbjct: 126 QLAAMMKNQGLIVANEIHPKRVKALSENIERFGITNALVTNETPEKLAKYFPGFFDKILV 185

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+  + +       + + A  QR +L    S +K GG++V+S C+   ++
Sbjct: 186 DAPCSGEGMFRKDEEAVRFWSQAHVEQCASKQRHILDCAYSMLKEGGVLVYSTCTFSPEE 245

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVS 427
           +E++++  L++    +EL+ +   +          +      E   R+ P  L+      
Sbjct: 246 NEQMIEAFLQTY-DDLELLSIEKVHGIQPGRREWTNTGLEEIERTARLWPHCLKGE---- 300

Query: 428 SGMDGFFAVALRR 440
               G F   +++
Sbjct: 301 ----GHFVAKMKK 309


>gi|86138310|ref|ZP_01056884.1| NOL1/NOP2/sun family protein [Roseobacter sp. MED193]
 gi|85824835|gb|EAQ45036.1| NOL1/NOP2/sun family protein [Roseobacter sp. MED193]
          Length = 389

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 134/449 (29%), Gaps = 75/449 (16%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  ++    +    L      + +     +D+  VR  V   LR 
Sbjct: 1   MTP--AARQQAAIEILDLILD-GEAAEKALTSWGRRNRYAG--SKDRAAVRDHVFTALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 +        L      +   LR                VD     + +      
Sbjct: 56  RRSFAVLGGAQTGRGL------VLGSLR-------------AEGVDPETVFSGQGYGPSP 96

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178
             +  ++     + +        A    IP+W         G     A          ++
Sbjct: 97  LTEAESAEPADFASD--------AERLDIPDWVWPSFSESIGLAAEAAGLALQERAPVHL 148

Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASA 230
            +  ++ +       L    +             + +    I +   FA+G+  +QDA++
Sbjct: 149 RVNLLRSNRSDAIEALAEESILCEPHPASETALEVTQGGRKIRNSDCFADGLVELQDAAS 208

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              V      + + VLD CA  GGK  A    +   + A D +  R+  L     R    
Sbjct: 209 QAVVDKLPLEDGMRVLDFCAGGGGKSLAMAGRAKIDLFAYDANTSRMNDLPLRAQRAGAD 268

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              I  +   +      FD VL D PCS +G+ RR P+  W      + +    Q ++L 
Sbjct: 269 ---ITCLSEDELENAAAFDLVLCDVPCSGSGSWRRAPEGKWRLTRAMLDEIRLSQGQILQ 325

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                V+ GG + ++ CS+  +++   +Q  L                            
Sbjct: 326 DAAQLVREGGHLAYATCSMLDEENSAQIQGFLDRHDGWKVAE------------------ 367

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                      +    V  G DGFF   L
Sbjct: 368 -----------QASWQVQDGTDGFFVTVL 385


>gi|157872965|ref|XP_001685003.1| nucleolar protein [Leishmania major strain Friedlin]
 gi|68128074|emb|CAJ08197.1| putative nucleolar protein [Leishmania major strain Friedlin]
          Length = 629

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 123/313 (39%), Gaps = 24/313 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195
               E+  + +   +     +   +A        + V          + A          
Sbjct: 231 YEYSEFLMDSILQLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMSVEP 290

Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++ E    I     +  G + +Q A++ +PV       N  VLD+ AAPGG
Sbjct: 291 LEKWSKVGLQVFESNVPIAGTIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGG 350

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310
           KT  +   + +   + A DVS+ R + L  NL RL +    +   D   Y    + FD V
Sbjct: 351 KTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGTGYERVMRNFDRV 410

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS TG I R   +  ++   DI +++  QR LLL  I   K GG VV+S CS   
Sbjct: 411 LLDAPCSGTGIISRDKSIKTSKQYKDIQRASQLQRALLLSAIDACKIGGYVVYSTCSFLV 470

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSS 428
           ++ E +V   LR   + V  + L              +     R     ++         
Sbjct: 471 EEDEAIVDFALRRRDVQVVEMGLPFGRP-------GFTKYRHHRYHDSLELSRHYFPHVH 523

Query: 429 GMDGFFAVALRRL 441
            MDGFF   L++L
Sbjct: 524 NMDGFFICKLKKL 536


>gi|170087176|ref|XP_001874811.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650011|gb|EDR14252.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 561

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 123/322 (38%), Gaps = 27/322 (8%)

Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE---TWAHKLNA 195
           +  IA      ++  E+    +     +   +A      + +            A  L  
Sbjct: 179 MADIASYYGYNDFLVEKFFQLFPVAEAIEFFEANEVSRPVTIRTNTLRTRRRDLAQALVN 238

Query: 196 VMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
             +    I                I + P +  G + +Q AS+ +PV       N  VLD
Sbjct: 239 RGVNLEPIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSLLPVIALSPQPNERVLD 298

Query: 248 LCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP- 303
           + +APGGKT  +     +   V A D +K R + L  N+ RL      +   D  ++   
Sbjct: 299 MASAPGGKTTHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKV 358

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGG 359
              FD VL+DAPCS TG I +   V   +   D    +  Q++L+L  I  V    K GG
Sbjct: 359 MGGFDRVLLDAPCSGTGVISKDSSVKLNKSDRDFTLLSHLQKQLILCAIDSVSPESKTGG 418

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP-- 417
            +V+S CS+   ++E VV   LR  P  V+LV    ++ +        +        P  
Sbjct: 419 YLVYSTCSVTVDENEAVVDYALRKRPN-VKLVDTGLSFGR-----EGFTKYRGKTFNPSL 472

Query: 418 DMLEKIDGVSSGMDGFFAVALR 439
           ++  +       MDGFF    +
Sbjct: 473 NLTRRFYPHVHNMDGFFVSKFK 494


>gi|163751727|ref|ZP_02158945.1| sun protein, putative [Shewanella benthica KT99]
 gi|161328379|gb|EDP99538.1| sun protein, putative [Shewanella benthica KT99]
          Length = 404

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 147/448 (32%), Gaps = 68/448 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  ++L  V+ +   L       +       L+  +Q  +  +    LR L      L 
Sbjct: 12  ELVINVLDMVLSEGKPLDRAYSHHFS---GLQLAPSEQARITVVAGDILRKLNLYCY-LS 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            V    + R    L  +  +   ++    +     VD      + +K     A       
Sbjct: 68  DVKSEEMSRMGTRLLNVWHM-FHELELPKMQYALQVDEREYFDRLEKAKAQPALWD---- 122

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYIDLTV-KFDI 186
                               PEW     +   G        + +     Y+ + + K   
Sbjct: 123 ------------------GCPEWLDTMGQAQLGDAWARERAALSTQPKRYLRVNLLKCTR 164

Query: 187 ETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           E    KL    + T  +   +         ++     F +G +  QDA + +        
Sbjct: 165 EDLGKKLRNEQVQTKEVEGVDTALEVTSDSALFRTESFKKGWFEQQDAGSQLVAAAVDAK 224

Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
             + V+D CA  GGK    A  +    ++ A+DV + +L+ L+    R + +     II 
Sbjct: 225 PGMRVIDACAGAGGKTLSIAAQMQGKGRLLAMDVEQWKLDSLKQRARRANAHNVETRIIA 284

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                   K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      V
Sbjct: 285 SSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRMV 344

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GGI++++ CS+  +++ + +   L  +     +   N                     
Sbjct: 345 KVGGILIYATCSIMPEENRDQIDAFLAENEHFKLIEDEN--------------------- 383

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                  I    SG DGF+   L R+ +
Sbjct: 384 -------ISVADSGFDGFYLAKLERISE 404


>gi|284921753|emb|CBG34826.1| conserved hypothetical protein [Escherichia coli 042]
          Length = 481

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 123/264 (46%), Gaps = 21/264 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241
            ++   L  +     G  ++   E    + S      G++++Q+AS+ +PV         
Sbjct: 60  ASYGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 119

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 120 PQRVMDVAAAPGSKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGIRNVALTHFDG 179

Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++
Sbjct: 180 RVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR 239

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + 
Sbjct: 240 PGGTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVF 296

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P + +          GFF   LR+
Sbjct: 297 PQIYDCE--------GFFVARLRK 312


>gi|126729799|ref|ZP_01745612.1| possible NOL1/NOP2/sun family protein [Sagittula stellata E-37]
 gi|126709918|gb|EBA08971.1| possible NOL1/NOP2/sun family protein [Sagittula stellata E-37]
          Length = 386

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 133/451 (29%), Gaps = 83/451 (18%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   ++ L+  ++    +    L      S F     +D+  VR  V   LR 
Sbjct: 1   MTP--AARIQAAAELIDRIVA-GEAAEKALTTWGRTSRFAG--SKDRAAVRDHVFDVLRM 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                      +       +  +  LLR+           D   +      A        
Sbjct: 56  WR------STAVKGGGEHGRARMLGLLRL--------RGIDPDTLFDGKGHAPAPLTEAE 101

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG----------KERVLAIS 169
            A                 +   A    +P+W  +R  +  G          +ER     
Sbjct: 102 RAA--------------GRMPDGADAWDLPDWLADRFRSDLGEAAGPTALALRERAPVFL 147

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
                   +                  + PT    L      +V    F +G   +QDA+
Sbjct: 148 RVNTLKCALAAARDRLAAEGVETAPHTLSPTALEVLSCARG-LVRTGAFTDGWVELQDAA 206

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           +   V L        VLD CA  GGKT      + GA + A D    R+  L     R  
Sbjct: 207 SQAVVDLIPPEGAGRVLDFCAGGGGKTLALAARLPGAALFAHDADPGRMSDLPQRAARAG 266

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                  +       P+  FD V+ D PCS +G  RR P+  W    D +      Q  +
Sbjct: 267 AKVTVTRQ-------PEGAFDLVIADVPCSGSGAWRRAPEGKWRLTEDRLTDLQSIQADI 319

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L    SFV PGG + ++ CS+   ++E  V + L   P                      
Sbjct: 320 LATCASFVAPGGCLAYATCSVLAAENEAQVARFLAERPGWRRGPS--------------- 364

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                 +  P         S G DGFF   L
Sbjct: 365 -----RQFLP---------SDGGDGFFVCCL 381


>gi|254775818|ref|ZP_05217334.1| Fmu [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 390

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 133/379 (35%), Gaps = 37/379 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  +L  V  +       L     +   R ++ RD      +   T R    +DA
Sbjct: 18  PARGAAFEVLRAVSERDAYANLALPALLRE---RGITGRDAAFATELTYGTCRTRGLLDA 74

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+              L  LLR+   Q+L   V  +A V   VEQA  +  +   A  VN
Sbjct: 75  VIGAAAGRPPEAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAAIEFGSAR-AGFVN 133

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKE--RLENFYGKERVLAISD 170
            +LRR++                       A +   P W  +            + A+  
Sbjct: 134 GVLRRIAGRDERSWVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAAELDAVLA 193

Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +         A  +   +       +         L    +G+  VQD
Sbjct: 194 SDDERPQVHLAARPGALTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRDGLALVQD 253

Query: 228 ASASIPVQ----LFGTLNNLSVLDLCAAPGGKT--------AQLIVSGAKVTALDVSKRR 275
             + +  +         +    LDLCA PGGKT         +      +VTA++ + RR
Sbjct: 254 EGSQLVARALTLAPVDGDCGRWLDLCAGPGGKTALLASLGAQRFSGPQFRVTAVEPAPRR 313

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            + +  N     L   +++ +D      +  FD VLVDAPC+  G +RR P+  W R   
Sbjct: 314 ADLVVENT--RGLP-VEVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWRRQPG 370

Query: 336 DIVKSACFQRKLLLQGISF 354
           D+      QR+LL   I+ 
Sbjct: 371 DVPTLTKLQRELLGAAIAL 389


>gi|312111072|ref|YP_003989388.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y4.1MC1]
 gi|311216173|gb|ADP74777.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y4.1MC1]
          Length = 463

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 110/253 (43%), Gaps = 19/253 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E     P  A G++++Q+ SA    ++       +VLDLCAAPGGKT 
Sbjct: 66  PFCPTGFYYDGGEQPGKHPYHAAGLYYIQEPSAMFVAEVLAPNPGETVLDLCAAPGGKTT 125

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           Q   ++ +   + A ++  +R++ L  N++R  +    +               FD +LV
Sbjct: 126 QLAAMMKNQGLIVANEIHPKRVKALSENIERFGITNALVTNETPEKLAKYFPGFFDKILV 185

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+  + +       + + A  QR +L    S +K GG++V+S C+   ++
Sbjct: 186 DAPCSGEGMFRKDEEAVRFWSQAHVEQCASKQRHILDCAYSMLKEGGVLVYSTCTFSPEE 245

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVS 427
           +E++++  L++    +EL+ +   +          +      E   R+ P  L+      
Sbjct: 246 NEQMIEAFLQTY-DDLELLSIEKVHGIQPGRREWTNTGLEEIERTARLWPHCLKGE---- 300

Query: 428 SGMDGFFAVALRR 440
               G F   +++
Sbjct: 301 ----GHFVAKMKK 309


>gi|331701427|ref|YP_004398386.1| RNA methylase, NOL1/NOP2/sun family [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128770|gb|AEB73323.1| RNA methylase, NOL1/NOP2/sun family [Lactobacillus buchneri NRRL
           B-30929]
          Length = 454

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 112/304 (36%), Gaps = 20/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F  + +   GK        +   P      +     +    L+           
Sbjct: 1   MNLPTDFVNKYQQLMGKSEAAQFIASFDEPTTPGFRLNPLKASQPIDLDLSEPTEHCQFG 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                S         G  + Q+ SA    ++        VLDLCAAPGGKT      + +
Sbjct: 61  YHGQVS-GKTVDHQSGAVYSQEPSAMYVGEVAHPNLGERVLDLCAAPGGKTTHLGSYLQN 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              + A ++  +R + L  N++R  +    +   D      +    FD +LVDAPCS  G
Sbjct: 120 TGLLIANEIDSKRAKALVENVERFGMTNTIVTNTDPDHLAAQLPEFFDRILVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D  ++ A  QR +L Q +  +KPGG +++S C+   ++ E+++  +
Sbjct: 180 MFRKDPDAVQYWSVDYPIECAARQRTILTQAVKNLKPGGELIYSTCTFAPEEDEQIIAWL 239

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAV 436
           + +     E+ P+                       +RI P             +G F  
Sbjct: 240 VDTYG--FEIQPIKKFAGMDDGQPDWADGNQDLTNCVRIFPHHF--------NGEGHFIA 289

Query: 437 ALRR 440
            L++
Sbjct: 290 KLKK 293


>gi|156063948|ref|XP_001597896.1| hypothetical protein SS1G_02092 [Sclerotinia sclerotiorum 1980]
 gi|154697426|gb|EDN97164.1| hypothetical protein SS1G_02092 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 713

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/322 (24%), Positives = 133/322 (41%), Gaps = 33/322 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199
                   +  E+L N +  +   A  +A  +P  + +    ++      A  L    + 
Sbjct: 274 CAYYGYSGFLAEKLFNLFPPKEAFAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVV 333

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  VLD+ +A
Sbjct: 334 LEPVGKWSKVGLQIFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASA 393

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   + A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 394 PGGKTTHIAALMKNTGCIFANDSNKSRAKGLIGNIHRLGAKNVIVCNYDAREFPKVIGGF 453

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I +   V   +   D +     Q++LLL  I  V    K GG +V+
Sbjct: 454 DRVLLDAPCSGTGVIAKDASVKTNKTERDFLMLPHLQKQLLLSAIDSVDHASKTGGYIVY 513

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS-----IDMAMALSPEGWIRITPD 418
           S CS+  +++E+VVQ VL   P  V+LV    A+ K      +  +   + +   R  P 
Sbjct: 514 STCSVTVEENEQVVQYVLNKRPN-VKLVETGLAFGKEGFTSYMGKSFDKNMKMTRRYYPH 572

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
                      +DGFF    ++
Sbjct: 573 AY--------NVDGFFVSKFKK 586


>gi|149239082|ref|XP_001525417.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146450910|gb|EDK45166.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 637

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 128/321 (39%), Gaps = 27/321 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  ++L N +     +   +A      I +            A  L    + 
Sbjct: 253 CEYFGYSEFLADKLFNLFSPAEAIEFFEANEIARPITIRTNTLKTRRRDLAQSLVNRGVN 312

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 313 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAA 372

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT     ++ +   + A D +K R + L  N+ RL      +   DA ++      F
Sbjct: 373 PGGKTTYISAMMKNTGCIFANDANKARTKSLIANIHRLGCRNTIVCNYDAREFPKVIGGF 432

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D +L+DAPCS TG I +   V  +R   D ++    Q++LLL  I  V      GG++V+
Sbjct: 433 DRILLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSPTGGVIVY 492

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+   ++E VV   LR  P  V+LV    A  K        +        P  ++  
Sbjct: 493 STCSVAVDENEAVVDYALRKRPN-VKLVETGLAIGK-----EGFTSYRGKHFNPKLNLTR 546

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
           +    +  +DGF+    +++ 
Sbjct: 547 RYYPHTYNVDGFYVAKFKKIA 567


>gi|116181006|ref|XP_001220352.1| hypothetical protein CHGG_01131 [Chaetomium globosum CBS 148.51]
 gi|88185428|gb|EAQ92896.1| hypothetical protein CHGG_01131 [Chaetomium globosum CBS 148.51]
          Length = 722

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 90/363 (24%), Positives = 140/363 (38%), Gaps = 29/363 (7%)

Query: 92  QILYLDVADYAVVDL-AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
           Q+L   + +   V       A+     R  A+  N +L+ V              ++ P 
Sbjct: 242 QMLRTRITETIRVLEDFSNLAED---GRSRAEYTNQLLKDVCAYYGYN------ENLFPP 292

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210
                        R + I    +     DL           +        G   + E   
Sbjct: 293 REAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQ-VFESTV 351

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
            + + P +  G + +Q AS+ +PV       N   LD+ AAPGGKT  +   + +   V 
Sbjct: 352 PLGATPEYLAGHYILQAASSFLPVMALCPQENERCLDMAAAPGGKTTHMSALMKNTGVVF 411

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A D SK R + L  N+ RL      +   DA ++      FD VL+DAPCS TG I + P
Sbjct: 412 ANDPSKSRAKGLIGNIHRLGARNVIVCNYDAREFPRVMGGFDRVLLDAPCSGTGVIAKDP 471

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDS--EEVVQKV 380
            V   RD  D ++    Q++LLL  I  V    K GG VV+S CS+  +++  E+VV   
Sbjct: 472 SVKTNRDEKDFIQLPHTQKQLLLAAIDSVNHASKTGGYVVYSTCSVAIEENFSEQVVAYA 531

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVAL 438
           L   P  V+LV     + K        +        P   +  +       +DGFF    
Sbjct: 532 LSRRPN-VKLVETGLPFGK-----EGFTSYMGKAFHPSLKLTRRYYPHLYNVDGFFVAKF 585

Query: 439 RRL 441
           +++
Sbjct: 586 QKV 588


>gi|282850876|ref|ZP_06260250.1| putative ribosomal RNA small subunit methyltransferase B
           [Lactobacillus gasseri 224-1]
 gi|282557828|gb|EFB63416.1| putative ribosomal RNA small subunit methyltransferase B
           [Lactobacillus gasseri 224-1]
          Length = 308

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 128/306 (41%), Gaps = 32/306 (10%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML--------P 199
            P+W  E L + +G+++   I      P    + +  + + +     A+           
Sbjct: 17  FPKWLVEYLLDNFGEDQTKEILVRSNQPAANSIRMAVEEDKFEEIKEALKKDGFDFKESC 76

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
                L      +     F +G   +QDA+AS+ V  F    +  VLD C+APGGKT Q+
Sbjct: 77  LTAHNLNLNKGGVAQTNLFKDGKITIQDAAASLAVDAFKFTGDEQVLDACSAPGGKTVQI 136

Query: 260 IVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKK---LFDAVLVD 313
                   V ALD+ + +L  ++    RLH+        +DA           FD +LVD
Sbjct: 137 AEKLTTGNVIALDIHENKLRLVKNAAKRLHVSDKVKTKALDARKAQEYFTAGQFDKILVD 196

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G IRR P++   +  +DI   A  Q  +L      +  GG +V+S C++  ++ 
Sbjct: 197 APCSGLGLIRRKPEIRCEKSLNDIKNLARIQLSILENISGLLTAGGELVYSTCTISLEED 256

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E VV + L+  P   ELVP+                +  +RI P         + G DGF
Sbjct: 257 EGVVNQFLKLHP-DFELVPVQVGKLP---------KQNMVRIFPS--------ADGSDGF 298

Query: 434 FAVALR 439
           F   L+
Sbjct: 299 FIAKLK 304


>gi|260598310|ref|YP_003210881.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter
           turicensis z3032]
 gi|260217487|emb|CBA31639.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
           turicensis z3032]
          Length = 480

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243
           +  +L  V     G  ++   E    + S      G +++Q+AS+ +PV      NN   
Sbjct: 61  YGWQLTPVPWCPEGFWIEREDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADNNAPA 120

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 121 RVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIRNVGLTHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L         + A  QR+L+      + PG
Sbjct: 181 FGAALPEQFDAILLDAPCSGEGVVRKDPDALRNWSPQSNQEIAATQRELIDSAFHALAPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++++++E V+ +L   P  VE++ L + +        AL+ EG++ + P 
Sbjct: 241 GTLVYSTCTLNREENQETVRWLLARYPQAVEVLSLEALFP---GADAALTEEGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDCE--------GFFVARLRKTA 313


>gi|148553330|ref|YP_001260912.1| Fmu (Sun) domain-containing protein [Sphingomonas wittichii RW1]
 gi|148498520|gb|ABQ66774.1| Fmu (Sun) domain protein [Sphingomonas wittichii RW1]
          Length = 389

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 150/457 (32%), Gaps = 86/457 (18%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISL----TCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M  G  A   +  LL  ++R           L+   +    +     +D+  +R ++   
Sbjct: 1   MTPGARA-QAAIELLDGIVRAAREGGAAADTLIARYFKTRRYAG--SKDRRAIRELIYRA 57

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
           +R                      S +  L V +A                   A     
Sbjct: 58  IRRTGE---------------VPASGRAAL-VGLA-------------REDAALAAAFDG 88

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
             H    + +                +    +P W  +R++             A +   
Sbjct: 89  APHTPAPIAADEE------------GSPAGALPRWLADRIDPS--------EHAALLERA 128

Query: 177 YIDLTVKFDIET----WAHKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASAS 231
            +DL V           A   +A   P     L+      I +   + +G+  +QD  + 
Sbjct: 129 PLDLRVNHSRADRDAIAALLPDAQPTPFAPHGLRLPEGTPIEASAPWVDGLVEIQDEGSQ 188

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +          ++VLDLCA  GGKT   A  +  G ++ A D ++ RL++L     R   
Sbjct: 189 LIALAGQAAGGMTVLDLCAGAGGKTLALADDMGGGGRLIASDTNRARLDRLAPRAQRSGF 248

Query: 289 YAEDIIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              +   +D           +   D VLVDAPCS TGT RR+P+  W    D + +    
Sbjct: 249 GGIETRLLDPGREMATLGDLRDACDVVLVDAPCSGTGTWRRNPEARWRLTPDRLARLVET 308

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +LL      V+PGG +V++ CSL  ++    ++  L                   +  
Sbjct: 309 QARLLDLAADLVRPGGALVYAVCSLLDEEGAGQLRAFLGRRSSFA---------AAQLPF 359

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +     +G   ++P           G DGFF   L R
Sbjct: 360 SAGRYQDGGTLLSPGH--------DGTDGFFVARLVR 388


>gi|17536757|ref|NP_493742.1| NucleOLar protein family member (nol-1) [Caenorhabditis elegans]
 gi|14574242|gb|AAC78177.2| Hypothetical protein W07E6.1 [Caenorhabditis elegans]
          Length = 664

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           A      G+ + +    + + P +  G + +Q  ++ +PV          VLD+C+APGG
Sbjct: 259 AADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 318

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309
           KT+ +   + +   + A D +  R   +  NL RL +    +  +   ++   +   FD 
Sbjct: 319 KTSHIAALMKNSGVLFANDANFTRCRAIIGNLHRLGVNNTVVCNLGGEEFSKIRPNGFDR 378

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSN 365
           +L+DAPCS TG I +   V  ++D+ D+ +    QR+L+L  +  +      GG +V+S 
Sbjct: 379 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTMQRQLILSALDSLDANSPNGGYLVYST 438

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKI 423
           CS+  +++E VV  +L       ELVP   +           +     R  P   M ++ 
Sbjct: 439 CSVLVEENEAVVNFLLERRHC--ELVPTGLSIGV-----DGYTRFRDYRFHPSLSMTKRY 491

Query: 424 DGVSSGMDGFFAVALRRL 441
                 +DGF+   +++L
Sbjct: 492 YPHVHNIDGFYVAKIKKL 509


>gi|308456988|ref|XP_003090900.1| CRE-NOL-1 protein [Caenorhabditis remanei]
 gi|308260037|gb|EFP03990.1| CRE-NOL-1 protein [Caenorhabditis remanei]
          Length = 677

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           A      G+ + +    + + P +  G + +Q  ++ +PV          VLD+C+APGG
Sbjct: 270 AADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 329

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309
           KT+ +   + +   + A D S  R   +  NL RL +    +  +   ++   +   FD 
Sbjct: 330 KTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGEEFAKIRPNGFDR 389

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSN 365
           +L+DAPCS TG I +   V  ++D+ D+ +    QR+L+L  +  +      GG +V+S 
Sbjct: 390 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLDANSPNGGYLVYST 449

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKI 423
           CS+  +++E VV  +L       ELVP   +           +     R  P   M ++ 
Sbjct: 450 CSVLVEENEAVVNFLLERRHC--ELVPTGLSIGV-----DGYTRFRDYRFHPSLSMTKRY 502

Query: 424 DGVSSGMDGFFAVALRRL 441
                 +DGF+   +++L
Sbjct: 503 YPHVHNIDGFYVAKIKKL 520


>gi|163746276|ref|ZP_02153634.1| NOL1/NOP2/sun family protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380161|gb|EDQ04572.1| NOL1/NOP2/sun family protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 386

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 146/451 (32%), Gaps = 77/451 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L  +    ++    L      S F     +D+  VR  V   LR 
Sbjct: 1   MTPG--ARVSAAIEVLDAI-AGGLAAEQALTRWARQSRFAG--SKDRAAVRDHVFDVLRQ 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                                     L + V   L+   AD   +      A     +  
Sbjct: 56  RRTAAHYGCGETGR-----------ALMIGV---LHGQGADLDTLFTGEGHAPTPLSDE- 100

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI- 178
                        R+  +  +  A  + +P+W     +     +                
Sbjct: 101 ------------ERQVPDAPEDRATKNNLPDWLLPLFDAALADKADAVAVALQARGPICL 148

Query: 179 -----DLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
                 + V       A    +  A  L    + + E    I +   F++G   +QDA++
Sbjct: 149 RVNTARIEVPAAQALLAEDGVQTCANPLADAALTVTEGARRIRNSRAFSDGYVELQDAAS 208

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289
              V          VLD CA  GGK   L +  ++   A D+  RR+  L    +R    
Sbjct: 209 QAVVAALPL--GGRVLDYCAGGGGKALALAMDPSREITAHDIDPRRMSDLTPRAERAG-- 264

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              I   DA        +D VL DAPCS +G  RR  +  WT   D + +    Q ++L 
Sbjct: 265 -VSITLADAEQAKAGGPYDLVLCDAPCSGSGAWRRAAEGKWTLTPDRLAELTGIQDQILD 323

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
              +   P G++ ++ CSL ++++E  V+  L   P          A+  +      ++P
Sbjct: 324 TAAALTAPQGVLAYATCSLFREENEARVEAFLTRHP----------AWKIARMDRYDVTP 373

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +G                   DGFF+  L R
Sbjct: 374 DG-------------------DGFFSAQLTR 385


>gi|225028078|ref|ZP_03717270.1| hypothetical protein EUBHAL_02348 [Eubacterium hallii DSM 3353]
 gi|224954548|gb|EEG35757.1| hypothetical protein EUBHAL_02348 [Eubacterium hallii DSM 3353]
          Length = 485

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 124/309 (40%), Gaps = 22/309 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-----KLNAVMLPT 200
             +PE ++ +++   G +  L   D+        L V    +  A       L+  +   
Sbjct: 1   MNLPEDYQNKMQKMLGGDEYLQYLDSFNYSYGQTLRVNQLKKEPADFIRRFLLDGQVSWC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 E  + + + P +  GV+++Q+ SA  P           VLDLCAAPGGK+    
Sbjct: 61  STGFYYEGEQKLSAHPYYYAGVYYLQEPSAMAPAAFLPVEPGDKVLDLCAAPGGKSTALA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAP 315
             +     + + D+S  R + L  N++   +          +         FD +LVDAP
Sbjct: 121 AKLQGEGFLLSNDISASRCKPLLKNMEMAGVKNSVITCESPEKLAGRFAGYFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  RR P ++ +   +++ + A  QR++L      +KPGG +++S C+  K++ E+
Sbjct: 181 CSGEGMFRREPSMVKSWSPEEVERYAKLQREILTSAAQMIKPGGYLLYSTCTFAKEEDEQ 240

Query: 376 VVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMD 431
            V+  L       ++ +PL     +          E      R  P  ++          
Sbjct: 241 TVEYFLEQHRDFSLQELPLCDGIEEGKPEWTIRGREDVKNCRRFLPHKVKGE-------- 292

Query: 432 GFFAVALRR 440
           G FA   R+
Sbjct: 293 GHFAALFRK 301


>gi|163749486|ref|ZP_02156734.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella benthica
           KT99]
 gi|161330895|gb|EDQ01822.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella benthica
           KT99]
          Length = 458

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 150/446 (33%), Gaps = 36/446 (8%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
            HL + VM K+     ++   +  +       +D+ ++R  +    R+   ++       
Sbjct: 33  LHLFTQVMEKKQPADRVVGEYFRVNKKHG--SKDRRVIRESLFALFRWWGWLNKFSTHTG 90

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             ++     S   +L ++  ++       +          K+         L     +  
Sbjct: 91  TCTVNTGTQSWFTMLTLNA-RLESHSWEPFIAAWTGFSGQKQALILDADTPLETVSAKCD 149

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
                          ++PEWF +       ++R+  +      P                
Sbjct: 150 WLASQFPAISFTTDDLVPEWFWQTCPIQDAEQRLAMVQALSSRPPIWARVQNIATNEAIA 209

Query: 192 KLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           KL        A    +  I L     ++  +  + EG   +QD  + +  Q+     N +
Sbjct: 210 KLAKLDITATASEYFSDSISLGHKSINLNGMSLYREGELEIQDLGSQVVGQICNPSPNDN 269

Query: 245 VLDLCAAPGGKTAQ--------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
             D C+  GGK+ Q           +   +   DV ++ LE+L     R           
Sbjct: 270 WWDTCSGAGGKSLQLRSLMLAKDKQARGTIIVSDVRRKPLEELAKRAKRAGFKGITASPW 329

Query: 297 DAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            + D   P   FD VLVDAPCS TGT RR+PD+ W    + +      Q  ++ +    V
Sbjct: 330 KSDDLPVPHNHFDGVLVDAPCSCTGTWRRNPDMRWIDGIEAVQDKPDLQLDIISRSSQAV 389

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K GG +V++ CSL   ++E+VV   L        +V  +               E  + +
Sbjct: 390 KIGGTLVYATCSLSPLENEDVVNAFLAKHADFTLVVTRHP----------FTGVEACMHL 439

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                  +    +  DG F   ++R 
Sbjct: 440 -------VLPYQADTDGMFVARMKRK 458


>gi|218673656|ref|ZP_03523325.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli GR56]
          Length = 389

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 139/413 (33%), Gaps = 42/413 (10%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           D+  +  IV   LR       ++D                ++                  
Sbjct: 2   DRAAIGNIVYDALRMRLSHAWLMDD------DSAAAIAHAVM-------------FRQWG 42

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
                 A    +++     +++        +            IPEW +   E  +G   
Sbjct: 43  FTPDRLAAELADDKFAPPPLSADALAAFASRSLDDAPPHIRGDIPEWIQPSFERAFGAGW 102

Query: 165 VLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELP----------ES 211
           +     A  +   +DL         +     L         I    +            +
Sbjct: 103 LAEA-QALAARPTLDLRANILKSSRDKAVKALERAGAQAAKIARYGIRIAAGEGASRLPN 161

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268
           + +   F +G + VQD  + I   L    +   +LD CA  GGKT  +   + +  +V A
Sbjct: 162 VTAELSFQKGWFEVQDEGSQIVADLVLAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHA 221

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
            D  ++RL  +   L R       + +            D VLVDAPC+ TGT RR PD 
Sbjct: 222 YDADRKRLAPIIERLKRAGTRNVQVHDDARGLSGLAGRCDKVLVDAPCTGTGTWRRRPDT 281

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            W     ++ +    Q+  L Q   FVKPGG +++  CS+  Q++EE V++    +P   
Sbjct: 282 KWRLTAKNLDERTAQQQDALAQAGGFVKPGGELIYVTCSVLPQENEEQVRRFAADNPDFQ 341

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  L +        A        + +       +   S+  DGFF   ++R 
Sbjct: 342 IVGALPAWDALFGRDAPRPHSSDGLTV------TLTPASTDTDGFFFCRMQRK 388


>gi|84686867|ref|ZP_01014751.1| possible NOL1/NOP2/sun family protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665064|gb|EAQ11544.1| possible NOL1/NOP2/sun family protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 390

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 143/449 (31%), Gaps = 75/449 (16%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L   +        +L      + +     +D+  +R IV   +R 
Sbjct: 1   MTP--AARLSAAIEILDNWLAGAAP-EQVLTRWGRANRYAG--SKDRAAIRDIVYDAVRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 +        L      +   LR + A        D   +      A        
Sbjct: 56  RRSFATLGGGETGRGL------VLGGLRAAGA--------DPDGLFTGDRFAPSPLTEE- 100

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYI 178
                                  A    +P+W    +++  G +   +A S    +P+++
Sbjct: 101 -----------ERTVLDLRNAPPAVRLDLPDWVLPLMQDSLGADCEAVAHSLRHRAPVFL 149

Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDASA 230
            +   K         L    + T    L +           +     + +G+  +QDA++
Sbjct: 150 RVNTAKVSRAGAQAALADEGIGTTEHTLSDTALEVTSGARRVHISRVYQDGLVELQDAAS 209

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
              V L      + VLD CA  GGK   L   GA VTA D+   R+  L     R  +  
Sbjct: 210 QAVVDLLDVTPGMRVLDYCAGGGGKALALAAQGAAVTAHDIDAGRMRDLPERARRAGVDI 269

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +      +        FD V  DAPCS +G+ RR P   W+   D +      Q  +L +
Sbjct: 270 DI-----SAPGQSGDGFDLVFADAPCSGSGSWRRAPQGKWSLTRDGLDALCLMQATILDE 324

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               V+PGG + ++ CSL  +++   ++  +   P                      +  
Sbjct: 325 IADHVRPGGRIAYATCSLFDEENMSQIKAFVARRPEW--------------------TLT 364

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
              R TP           G DGFF   L 
Sbjct: 365 ASRRFTP---------LDGGDGFFVAILE 384


>gi|323968602|gb|EGB64008.1| NOL1/NOP2/sun family protein [Escherichia coli M863]
          Length = 481

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERNDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|292488502|ref|YP_003531386.1| ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
           CFBP1430]
 gi|291553933|emb|CBA20978.1| Ribosomal RNA small subunit methyltransferase F [Erwinia amylovora
           CFBP1430]
          Length = 462

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  +         + S      G++++Q+AS+ +PV           
Sbjct: 45  YQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQ 104

Query: 244 SVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q+         + A + S  R++ L  NL R  +    +   D   
Sbjct: 105 RVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRV 164

Query: 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +     + FDAVL+DAPCS  G +R+  D L         + A  QR L+      ++PG
Sbjct: 165 FGSALPECFDAVLLDAPCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHALRPG 224

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++ ++++VV+ +L   P  V + PLN+ +          + EG++ + P 
Sbjct: 225 GTLVYSTCTLNRSENQQVVRWLLEQYPDAVAIEPLNTLF---NGAEQVATAEGFLHVFPH 281

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 282 IFDSE--------GFFVARLRKV 296


>gi|304396187|ref|ZP_07378069.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. aB]
 gi|304356556|gb|EFM20921.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. aB]
          Length = 547

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             +  +L  V     G  +    E   + S+     G++++Q+AS+ +PV          
Sbjct: 130 AGYGWQLTPVPWCEEGFWISREDESLPLGSVAEHLSGLFYIQEASSMLPVTALFDTQPEV 189

Query: 245 --VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   DA 
Sbjct: 190 SAVMDMAAAPGSKTTQIAARMGNQGVILANEFSSSRVKVLHANISRCGVSNSALTHFDAR 249

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            + P     FDA+L+DAPCS  G IR+  D L           A  QR LL      +K 
Sbjct: 250 VFGPALPEQFDAILLDAPCSGEGVIRKDADALKNWSLASTEAIADTQRDLLDSAFHALKA 309

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S C+L++ ++++V+  +L+  P  VE+VPL   +        A +PEG++ + P
Sbjct: 310 GGTLVYSTCTLNQIENQQVIDWLLQRYPDAVEVVPLEGLF---SGAEKAATPEGYLHVFP 366

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            M +          GFF   LR+  
Sbjct: 367 QMFDSE--------GFFVARLRKTA 383


>gi|120599595|ref|YP_964169.1| Fmu (Sun) domain-containing protein [Shewanella sp. W3-18-1]
 gi|120559688|gb|ABM25615.1| Fmu (Sun) domain protein [Shewanella sp. W3-18-1]
          Length = 463

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 156/448 (34%), Gaps = 48/448 (10%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF-VL 71
            L   +   ++    +L   + +        +D+ ++R  +    R+      + D    
Sbjct: 42  QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRIGDQQAS 99

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            +       S   LL     Q       D A     + Q+  D +      + +   +  
Sbjct: 100 ATYFASLSAS--ALLEAHAWQ-------DTATAWHELSQSPIDYQLAQALAVDSLDGKLT 150

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
             + +    ++    ++P+WF +        +  L  + +   P++         +    
Sbjct: 151 LMQHLFPAAKLKPQDLLPDWFWQVCPIDAALQTQLIEAMSSRPPIWGRAQGITSQDAATQ 210

Query: 192 KLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
                +  + G    +         ++  +  + +G   +QD ++ +  Q+     +   
Sbjct: 211 LQAIGIDASYGHYFNDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAHW 270

Query: 246 LDLCAAPGGKTAQ------------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
            D C+  GGKT Q               S   + + D+    LE+L     R H     +
Sbjct: 271 WDACSGAGGKTLQLRSLMLTKAADTQTPSTGSIISSDIRSNALEELTKRAQRAHFNGISV 330

Query: 294 IEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +     P   FD VLVDAPCS TGT RR+PD+ W    + +   A  Q  +L +  
Sbjct: 331 ARWKSVALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDSVEAVADKAALQLDILSRSS 390

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             VK GG++V++ CSL   ++++VV   L+  P    L P+   +               
Sbjct: 391 HAVKAGGVLVYATCSLSPLENQDVVTAFLQQHP-EFTLTPIRHPFTGEQTE--------M 441

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + + P          +  DG F V + R
Sbjct: 442 LTVWP--------FEANSDGMFVVRMLR 461


>gi|117926743|ref|YP_867360.1| Fmu (Sun) domain-containing protein [Magnetococcus sp. MC-1]
 gi|117610499|gb|ABK45954.1| Fmu (Sun) domain protein [Magnetococcus sp. MC-1]
          Length = 404

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 31/312 (9%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG 201
              +P+W  +     YG++    ++ A +    +DL V       E  A +L    + + 
Sbjct: 107 YYSLPDWLWQAWCEQYGQDAAQMLAAAMLEQAPVDLRVNRQRASREGVAQRLLESGVESA 166

Query: 202 GIRLKELPESIV------SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
            + +      +         P F EG+  +QD  +     L   +    ++D CA  GGK
Sbjct: 167 PLAISADGLRLTKRHLLRDHPVFLEGLAEIQDGGSQCIAPLLQPVAGQLLVDFCAGGGGK 226

Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFD 308
           T  L   + +  ++ ALD  + RL++L   L R  +          E D +        D
Sbjct: 227 TVHLAALMQNKGRILALDTQEHRLKRLAPRLKRNQIKMVQSHTIRHERDPWLSRWYGKAD 286

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VLVDAPCS +GT+RRHP++ W  +   +   A  Q  LL      VK GG +V++ CSL
Sbjct: 287 GVLVDAPCSGSGTLRRHPEIKWQLEPGQVGSLAIQQGALLEGAAHLVKRGGRLVYATCSL 346

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
             Q++EEVV+  LR++                      +   G ++       K+    +
Sbjct: 347 LAQENEEVVEAFLRTNRGF---------------RLEEIQGLGDLQRLATPYLKVMPQQA 391

Query: 429 GMDGFFAVALRR 440
             DGFF+  L R
Sbjct: 392 QTDGFFSAVLIR 403


>gi|312172646|emb|CBX80902.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia amylovora
           ATCC BAA-2158]
          Length = 478

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  +         + S      G++++Q+AS+ +PV           
Sbjct: 61  YQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQ 120

Query: 244 SVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q+         + A + S  R++ L  NL R  +    +   D   
Sbjct: 121 RVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRV 180

Query: 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +     + FDAVL+DAPCS  G +R+  D L         + A  QR L+      ++PG
Sbjct: 181 FGSALPECFDAVLLDAPCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHALRPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++ ++++VV+ +L   P  V + PLN+ +          + EG++ + P 
Sbjct: 241 GTLVYSTCTLNRSENQQVVRWLLEQYPDAVAIEPLNTLF---NGAEQVATAEGFLHVFPH 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 298 IFDSE--------GFFVARLRKV 312


>gi|218281184|ref|ZP_03487710.1| hypothetical protein EUBIFOR_00271 [Eubacterium biforme DSM 3989]
 gi|218217630|gb|EEC91168.1| hypothetical protein EUBIFOR_00271 [Eubacterium biforme DSM 3989]
          Length = 435

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 19/288 (6%)

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
                K+   A  ++   PLY  + +           +             + + + + P
Sbjct: 10  MKELLKDEYDAYMESLSKPLYRGMRINLKKAELNEFDHLESPSQFCKESYYVDKPLGNHP 69

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKR 274
               G +++Q+ SAS  V++     +  VLDLCAAPGGK+ Q+   +    + + ++  +
Sbjct: 70  YHICGCFYLQEPSASSAVEILDVQEDDYVLDLCAAPGGKSTQIASHLKSGYLVSNEIDAK 129

Query: 275 RLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R+ +    +     D         FD +LVDAPCS  G I++H   L   
Sbjct: 130 RAQILLSNIERMGVKNVAVTNSSVDKLAKVFDCCFDKILVDAPCSGEGMIKKHDIALNHW 189

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             ++I   A  Q+++L    S +KPGG +V+S C+   ++ E+VV   L           
Sbjct: 190 SIENIELCAARQKEILEYAYSMLKPGGTLVYSTCTYALEEDEDVVLSFLEKH------ED 243

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +     + +            RI P           G +G F    ++
Sbjct: 244 IQLVDPEVLWGRKGFKDLNVRRIFP---------MDGGEGHFIAKFKK 282


>gi|331683339|ref|ZP_08383940.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli H299]
 gi|331079554|gb|EGI50751.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli H299]
          Length = 479

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|319426572|gb|ADV54646.1| Fmu (Sun) domain protein [Shewanella putrefaciens 200]
          Length = 404

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 138/447 (30%), Gaps = 70/447 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +  +    LR L      L 
Sbjct: 12  ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALVTGDILRRLNLYCY-LA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +    + R    L        A  L+ D+                         +    
Sbjct: 68  EISPDEMERYGSKLLN------AWHLFHDLP-----------------LPKMQYSLPVDE 104

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
           +R++    +   ++      PEW         GK        A  +     L        
Sbjct: 105 QRLAERIEQAKTQLVLWDGCPEWLDTMGREQLGKSW-EKERAALSTAPKRFLRANGLKVT 163

Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            +    KL A                     ++     F EG++  QDA +         
Sbjct: 164 RDELIAKLAAEYVSTLPVDTVNSALEVTSDSALFRTQSFKEGLFEQQDAGSQRVAAALDA 223

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
              + V+D CA  GGKT      +    ++ A+DV + +L+KL+    R   Y  +    
Sbjct: 224 KPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAYNVETRLI 283

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                    K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      
Sbjct: 284 ASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILNSYSRM 343

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GGI+V++ CS+   ++   V   L  +P    +                        
Sbjct: 344 VKVGGILVYATCSIFPCENRGQVDAFLAENPNFRLIED---------------------- 381

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 E I    +G DGF+   + R+
Sbjct: 382 ------ETISPADTGFDGFYLAKIERI 402


>gi|292899688|ref|YP_003539057.1| hypothetical protein EAM_1978 [Erwinia amylovora ATCC 49946]
 gi|291199536|emb|CBJ46653.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
          Length = 478

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  +         + S      G++++Q+AS+ +PV           
Sbjct: 61  YQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQ 120

Query: 244 SVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q+         + A + S  R++ L  NL R  +    +   D   
Sbjct: 121 RVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRV 180

Query: 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +     + FDAVL+DAPCS  G +R+  D L         + A  QR L+      ++PG
Sbjct: 181 FGSALPECFDAVLLDAPCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHALRPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++ ++++VV+ +L   P  V + PLN+ +          + EG++ + P 
Sbjct: 241 GTLVYSTCTLNRSENQQVVRWLLEQYPDAVAIEPLNTLF---NGAEQVATAEGFLHVFPH 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 298 IFDSE--------GFFVARLRKV 312


>gi|296423329|ref|XP_002841207.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637442|emb|CAZ85398.1| unnamed protein product [Tuber melanosporum]
          Length = 643

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 127/326 (38%), Gaps = 31/326 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L + +      +  +A        +            A  L    + 
Sbjct: 253 CAYYGYSEFLAEKLFHLFSPHEAFSFFEANEKERPHVIRTNTLKTGRRELAQALINRGVT 312

Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +        ++ E    + + P +  G + +Q AS+ +PV       N  +LD+ AA
Sbjct: 313 LEPVGKWSKVGLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQENERILDMAAA 372

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGKT  +   + +   V A D ++ R + L  N+ RL +    +   DA ++      F
Sbjct: 373 PGGKTTYISALMKNTGCVFANDSNRARTKGLIGNIHRLGVKNTIVCNYDAKEFPKVIGGF 432

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPCS TG I + P V   ++  D +     Q++LLL  I  V      GG +V+
Sbjct: 433 DRVLLDAPCSGTGVISKDPSVKTNKNAKDFMLLPHLQKQLLLCAIDSVDYASPTGGYLVY 492

Query: 364 SNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGW---IRITPDM 419
           S CS+  +++E VV+  LR  P   +    L                E      R  P M
Sbjct: 493 STCSVTVEENESVVEYALRKRPNVKLVETGLTFGREGFTSYRGKTFNEKMKWARRFYPHM 552

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQPK 445
                     +DGFF    +++   K
Sbjct: 553 Y--------NVDGFFVAKFKKIGPTK 570


>gi|303242957|ref|ZP_07329415.1| RNA methylase, NOL1/NOP2/sun family [Acetivibrio cellulolyticus
           CD2]
 gi|302589506|gb|EFL59296.1| RNA methylase, NOL1/NOP2/sun family [Acetivibrio cellulolyticus
           CD2]
          Length = 457

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 118/310 (38%), Gaps = 22/310 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------P 199
             +P  F ++++N            +   P +  L V     +    L            
Sbjct: 1   MKLPVEFLDKIKNLLDAAEYEDFIKSYDLPRFYGLRVNTLKISVEEFLKISPFKLEPIPW 60

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
           T         E+    P +  G++++Q+ SA +P  +       ++LDLCAAPGGKT Q+
Sbjct: 61  TKDGFYYNEGENPGKHPYYYAGLYYIQEPSAMLPGAVIDAKPGENILDLCAAPGGKTVQI 120

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDA 314
              +     + A D++  R++ L  N++   +    +      +        FD +L+DA
Sbjct: 121 AAGMKGKGLLVANDINSDRVKALVKNIELCGITNAVVTNDSPQNLSAKFNHFFDKILIDA 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+  D   +         +  QR +L      +KPGG +V+S C+   +++E
Sbjct: 181 PCSGEGMFRKDEDAAKSWGKYKCDLCSGMQRDILGHVDGMLKPGGYLVYSTCTFSPEENE 240

Query: 375 EVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMD 431
           +++   L S P   +  VP               + E     R+ P  ++          
Sbjct: 241 QMIAAFLESHPDYELFEVPKTGGIDDGRPQWSDNNSELKKTARLWPHKIKGE-------- 292

Query: 432 GFFAVALRRL 441
           G F   L + 
Sbjct: 293 GHFVALLHKK 302


>gi|119774223|ref|YP_926963.1| Fmu (Sun) [Shewanella amazonensis SB2B]
 gi|119766723|gb|ABL99293.1| Fmu (Sun) [Shewanella amazonensis SB2B]
          Length = 454

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 158/458 (34%), Gaps = 67/458 (14%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI-------DA----- 65
           + ++R     +L   + +        +D+ L+R  +    R+   +       DA     
Sbjct: 28  IFKQREGADRVLANYFREHKKHG--SKDRKLIRETLFGLFRWWGWLKNLPAADDANANIE 85

Query: 66  -------VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
                  + +        +        L  ++    + D+          +      E  
Sbjct: 86  DSGFSSGLGEAHSPRWFTQLS------LVAAIENHQWQDIRSG----WLSQANLSQLEIP 135

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            F     ++    +    +     A  +++P+W  E +      +++  +   C  P   
Sbjct: 136 AFGDTPENLNIICAALIKQFGGEFAPPNLLPDWAWEHISVAGS-DKLAFVDALCRRPPLW 194

Query: 179 DLTVKFDIETWAHKLNA-------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
                   E    +L A         +    I L     ++ ++  +  G   VQD ++ 
Sbjct: 195 TRAQGTSREQVLKQLEADDIGAVPSKVFADAIELASQSINLDAVTAYTSGKLEVQDLASQ 254

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA------KVTALDVSKRRLEKLRCNLDR 285
              ++          D CA  GGK+ QL           ++ A D+  + LE+L    D+
Sbjct: 255 AIGEVAAPKAGERWWDACAGAGGKSLQLFSLMQKRGGVGELVASDIRPKALEELLRRADK 314

Query: 286 LHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
             +    +    +         FD VLVDAPCS TGT RR+PD+ W  D   I+     Q
Sbjct: 315 AGVAPIQLSPWRSDKLPVKADYFDGVLVDAPCSCTGTWRRNPDMRWIDDASAILDKPALQ 374

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             +L +  + V+ GG++V++ CSL + ++E VV+  L            +   ++    A
Sbjct: 375 LDILRRASAAVRSGGVLVYATCSLARAENEAVVEAFLA-----------SDEDFELDTTA 423

Query: 405 MALSPEGW--IRITPDMLEKIDGVSSGMDGFFAVALRR 440
              S E    + + P             DG F   +RR
Sbjct: 424 HPFSGEHCAVMTLWPQQA--------NADGMFVARMRR 453


>gi|323977982|gb|EGB73068.1| NOL1/NOP2/sun family protein [Escherichia coli TW10509]
          Length = 479

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|301026587|ref|ZP_07190010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           69-1]
 gi|300395420|gb|EFJ78958.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           69-1]
          Length = 481

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL + +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGNLFP---GADKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|170769367|ref|ZP_02903820.1| ribosomal RNA small subunit methyltransferase F [Escherichia
           albertii TW07627]
 gi|170121691|gb|EDS90622.1| ribosomal RNA small subunit methyltransferase F [Escherichia
           albertii TW07627]
          Length = 479

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   +    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWTLTPIPWCEEGFWIERSDDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNSPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  ++ A  QR+L+      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ I P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLF---SGADKALTEEGFLHIFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|300938813|ref|ZP_07153523.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           21-1]
 gi|300456246|gb|EFK19739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           21-1]
          Length = 481

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANICRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTKEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|127512819|ref|YP_001094016.1| Fmu (Sun) domain-containing protein [Shewanella loihica PV-4]
 gi|126638114|gb|ABO23757.1| Fmu (Sun) domain protein [Shewanella loihica PV-4]
          Length = 418

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 149/448 (33%), Gaps = 68/448 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  ++L+ V+ +   L       +       L+  +Q  +  +    LR L      L 
Sbjct: 24  ELVINVLAMVLEEGKPLDRAYSHHFSGLK---LAPSEQARITYVTGDLLRRLNFYCY-LA 79

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +    + R    L                  + + +                  +    
Sbjct: 80  DISTDEIARMGSRLLN---------------AWHMANELPI--------PKLQYTLAIEE 116

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYIDLT-VKFDI 186
               +      Q+ A     PEW     +   G +      + A     Y+ +  +K + 
Sbjct: 117 DDFYQRLEAAKQQAALFDGCPEWLDTLGQEQLGDDWAKERAALAQAPKRYLRVNPLKTNS 176

Query: 187 ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           E  A +L    + T  +             ++     F +G++  QDA +       G  
Sbjct: 177 EDLAKRLAKEGVETREVPGVPSALEVISDAALFRTECFKQGLFEQQDAGSQHVAAAVGAE 236

Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295
             + V+D CA  GGK    A  +    ++ A+DV + +L+ L+    R   +     II 
Sbjct: 237 PGMRVIDACAGAGGKTLAIAAQMQGKGRLLAMDVEQWKLDNLKQRARRAGAHNVETRIIA 296

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                   K   D VL+D PCS  G ++R+PD  W    D +      QR++L      V
Sbjct: 297 SSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTPDRLPVLVELQREILQSYSRMV 356

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K  GI++++ CS+  Q++ + V   L ++P    +                         
Sbjct: 357 KVDGILIYATCSIMPQENRQQVDAFLAANPHFSFIDD----------------------- 393

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                E +    +G DGF+   ++R  +
Sbjct: 394 -----ETVSVADTGFDGFYLARMKRTAE 416


>gi|331673368|ref|ZP_08374136.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli TA280]
 gi|331069566|gb|EGI40953.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli TA280]
          Length = 481

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|126737808|ref|ZP_01753538.1| NOL1/NOP2/sun family protein [Roseobacter sp. SK209-2-6]
 gi|126721201|gb|EBA17905.1| NOL1/NOP2/sun family protein [Roseobacter sp. SK209-2-6]
          Length = 392

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 140/451 (31%), Gaps = 75/451 (16%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  ++    S    L      S F     +D+  VR  V  +LR 
Sbjct: 1   MTP--AARLQAAIEILDQILV-GKSAEQQLTAWGRRSRFAG--SKDRAAVRDHVFQSLRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L     +        L      +  LLR         +             ++     R 
Sbjct: 56  LRSYAVLGGAKTGRGL------ILGLLR------HKGEDPSAFFTGEGHAPSELTLSERG 103

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178
            A   +S                A    IPEW         G++  LA +        ++
Sbjct: 104 AAGQFSSE---------------AEELDIPEWLWNSFSQSLGQDAPLAAAALQGRAPVHL 148

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWWVQDASA 230
            +         A K  A                 +      + +   +  G+  +QDA++
Sbjct: 149 RVNRLKGTVEAAQKALAEEGIDSAAHPASPWALEVTSNARRLRNSQAYLCGLVELQDAAS 208

Query: 231 SIPVQLFGTLNNLSVLDLC-AAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              + +    + L+VLDLC    G   A    +  K+ A D+ ++R++ +     R    
Sbjct: 209 QAVIDVLPLEDGLNVLDLCAGGGGKSLAMAAAAKLKLFAHDIEQKRMKDIPDRAKRAGAR 268

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              +         P   +D VL DAPCS +G+ RR P+  W    D + +    Q  +L 
Sbjct: 269 IALLATEQLARTGP---YDLVLCDAPCSGSGSWRRAPEGKWNLSRDRLDEIKALQAGILD 325

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           Q    +   G + ++ CS+  +++E+ VQ  L       E                    
Sbjct: 326 QATQLISATGTLAYATCSMLAEENEDQVQAFLARHSGWSETA------------------ 367

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       K      G DGFF   L R
Sbjct: 368 -----------RKSWKTHEGTDGFFVSVLTR 387


>gi|123446653|ref|XP_001312075.1| NOL1/NOP2/sun family RNA methylase containing protein [Trichomonas
           vaginalis G3]
 gi|121893909|gb|EAX99145.1| NOL1/NOP2/sun family putative RNA methylase containing protein
           [Trichomonas vaginalis G3]
          Length = 476

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 124/312 (39%), Gaps = 20/312 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGG 202
                +  E++ +      ++   DA      + +    ++         L+   +  G 
Sbjct: 116 YGYNRYLLEQIASLVPVAEIIDFIDANEHQRPVVIRTNTLRTRRNELERVLSERGVRLGP 175

Query: 203 IRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           +                I + P +  G + +Q  S+ +PV        +  LD+CAAPGG
Sbjct: 176 VDKWTKLGLIVYDSQVPIGATPEYLSGHYMIQSPSSFLPVMALNPQPGMRTLDMCAAPGG 235

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310
           KT  +   + +   + A D+++ R + L  N+ RL +    ++  D   +      FDAV
Sbjct: 236 KTTHMAQLMKNQGVIIANDINRTRAQALIANIHRLGVTNTIVVNYDGRAFPTVMGGFDAV 295

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVVFSNCSLD 369
           + DAPCS TG I R P V  ++   D+      Q++++L     +   GG + +  CSL 
Sbjct: 296 MCDAPCSGTGVISRDPSVKTSKSEQDLKVLTQNQKEIILHAYDSISSKGGKLCYCTCSLL 355

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVS 427
            +++E VV  ++ +    V  +P         D+A  +         P   +  ++    
Sbjct: 356 VEENEAVVDYLINNRKCKV--IPSGLDSDFDQDLAEGIVNYKGHHFHPSVQLSRRVYPHR 413

Query: 428 SGMDGFFAVALR 439
             MDGF+   + 
Sbjct: 414 LNMDGFYFALIE 425


>gi|120599031|ref|YP_963605.1| Fmu (Sun) domain-containing protein [Shewanella sp. W3-18-1]
 gi|120559124|gb|ABM25051.1| Fmu (Sun) domain protein [Shewanella sp. W3-18-1]
          Length = 404

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 138/447 (30%), Gaps = 70/447 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +  +    LR L      L 
Sbjct: 12  ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALVTGDILRRLNLYCY-LA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +    + R    L        A  L+ D+                         +    
Sbjct: 68  EISPDEMERYGSKLLN------AWHLFHDLP-----------------LPKMQYSLPVDE 104

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
           +R++    +   ++      PEW         GK        A  +     L        
Sbjct: 105 QRLAERIEQAKTQLVLWDGCPEWLDTMGREQLGKSW-EKERAALSTAPKRFLRANGLKVT 163

Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            +    KL A                     ++     F EG++  QDA +         
Sbjct: 164 RDELMAKLAAEYVSTLPVDTVNSALEVTSDSALFRTQSFKEGLFEQQDAGSQRVAAALDA 223

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
              + V+D CA  GGKT      +    ++ A+DV + +L+KL+    R   Y  +    
Sbjct: 224 KPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAYNVETRLI 283

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                    K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      
Sbjct: 284 ASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILNSYSRM 343

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GGI+V++ CS+   ++   V   L  +P    +                        
Sbjct: 344 VKVGGILVYATCSIFPCENRGQVDAFLAENPNFRLIED---------------------- 381

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 E I    +G DGF+   + R+
Sbjct: 382 ------ETISPADTGFDGFYLAKIERI 402


>gi|327394137|dbj|BAK11559.1| Sun protein YebU [Pantoea ananatis AJ13355]
          Length = 372

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 16/205 (7%)

Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           +SV+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   DA 
Sbjct: 15  MSVMDMAAAPGSKTTQIAACMHNRGVILANEFSASRVKVLHANITRCGVTNSALTHFDAR 74

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            + P     FDA+L+DAPCS  G +R+  D L           A  QR L+      +KP
Sbjct: 75  VFGPALPEQFDAILLDAPCSGEGVMRKDADALKNWSLTSTQTIAQTQRDLIESAFHALKP 134

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S C+L++ ++++VV  +L   P  VE+ PLN  +        A +PEG++ + P
Sbjct: 135 GGTLVYSTCTLNQIENQQVVAWLLARYPDAVEIAPLNGLF---AGAERAATPEGYLHVFP 191

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   LR+  
Sbjct: 192 HLFDSE--------GFFVACLRKTA 208


>gi|134093422|ref|YP_001098497.1| putative S-adenosyl-L-methionine-dependent RNA methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 449

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 111/450 (24%), Positives = 191/450 (42%), Gaps = 52/450 (11%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  ++ V  + I+L   L   +   A    + + +  ++ I    +R + R +A+L+ +
Sbjct: 29  AAQAVADV-GRGIALPQSLARIF---AQTNATPQARGAIQDISYHCMRHIGRAEALLNAM 84

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-------YLDVADYAVVDLAVEQAKRDKENRHFAKL 123
                      L  LL  ++A I            + + VVD AV  A  D +  H   +
Sbjct: 85  TTKQTE--PPILHGLLCCALALISDPEEAVSGARYSAFTVVDQAVTAAAADTDMAHAKGM 142

Query: 124 VNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           VN+ILRR  RE+  L++  AG        P+W+ +R+ + Y ++   AI +A  +   + 
Sbjct: 143 VNAILRRFLRERDALMKSAAGTQLARWNYPDWWIDRMRSAYPRDW-QAILEAGNAAPPLT 201

Query: 180 LTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           L V              A +  A  L          P  +  +PGF++G+  VQDA+A +
Sbjct: 202 LRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDAAAQL 261

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA- 290
              L    + + VLD CAAPGGK+  ++ +   ++TALD  +RRL ++  NL RL L A 
Sbjct: 262 AAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQLNAS 321

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             + +     +   K F+ +L D PC+++G +RRHPD+ W R   D V+ A    ++L  
Sbjct: 322 LLVGDATGNSWWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQLAAISAQILDN 381

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++  G ++F  CSL  Q+SE         +       P                  
Sbjct: 382 LWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNRAIRLPAPG----------------- 424

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              ++ P             DG F    ++
Sbjct: 425 ---QLLP-----TANAEDDHDGLFYALFQK 446


>gi|218510626|ref|ZP_03508504.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli Brasil 5]
          Length = 418

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 144/445 (32%), Gaps = 45/445 (10%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L+ +  ++  +   L        F      D+  +  IV   LR       ++D     
Sbjct: 1   MLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD---- 54

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                      ++                        A    +++     + +       
Sbjct: 55  --DSAAAIAHAVM-------------FRQWGFTPDRLAAELADDKFAPPPLAADALAAFA 99

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
            +            IPEW +   E  +G   +     A  +   +DL       +    +
Sbjct: 100 GRSLDDAPPHIRGDIPEWIQPSFEQAFGAGWLAEA-QALAARPTLDLRANILKASRDKAV 158

Query: 194 NAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
            A+                           ++ +   F +G + VQD  + I   L    
Sbjct: 159 KALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLVLAK 218

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           +   +LD CA  GGKT  +   + +  +V A D  ++RL  +   L R       + +  
Sbjct: 219 DGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVHDDA 278

Query: 298 AFDYCPKKLFD-AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
              + P +          PC+ TGT RR PD  W     ++ +    Q+  L Q   FVK
Sbjct: 279 RGLFGPCRALRQRCWSMRPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGFVK 338

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +++  CS+  Q++EE V++    +P    +  L +        A        + + 
Sbjct: 339 PGGELIYVTCSVLPQENEEQVRRFTTGNPDFQIVSALPAWDALFGKDAPRPHSCDALTV- 397

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
                 +   S+  DGFF   ++R 
Sbjct: 398 -----TLTPASTDTDGFFFCRMQRK 417


>gi|114319781|ref|YP_741464.1| Fmu (Sun) domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226175|gb|ABI55974.1| Fmu (Sun) domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 474

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 14/306 (4%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201
                ++ +W              +    A I+   +       +         V     
Sbjct: 11  FRYRDVVDDWPAFETAVASPLPATIWAHPARITREALR----SLLAEAGIDARPVAWQPS 66

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI- 260
            +RL           G A G++  Q+ ++ +PV L        VLDLCAAPG KTAQ   
Sbjct: 67  ALRLPAGLRPGAHW-GQAAGLYHAQEEASMVPVTLLDPQPGHRVLDLCAAPGNKTAQAAL 125

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCS 317
              +   V A DV+K RL  +R  + RL L    +    A DY P    FD V+ D PCS
Sbjct: 126 ALGNRGTVVANDVAKGRLAAIRHLIKRLGLMNVSVTCRPAQDYSPHAGGFDRVIADVPCS 185

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             GT+R+          +   +    Q  +L + +   +PGG +V+S C+   +++E+VV
Sbjct: 186 CEGTVRKSSQPSAQALCETRERLVARQTAILDKAVRLCRPGGRIVYSTCTFAPEENEQVV 245

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFA 435
             +LR  P  + L+P++      + +A  L+        P++ +  ++    +   GFF 
Sbjct: 246 DALLRRYPDELRLLPVS---LPGLYLAPGLTGWRGRTFLPELAQAVRLWPHHNNTGGFFI 302

Query: 436 VALRRL 441
             L R+
Sbjct: 303 ALLERV 308


>gi|194467993|ref|ZP_03073979.1| Fmu (Sun) domain protein [Lactobacillus reuteri 100-23]
 gi|194452846|gb|EDX41744.1| Fmu (Sun) domain protein [Lactobacillus reuteri 100-23]
          Length = 457

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 115/304 (37%), Gaps = 20/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
             +P  F  + +   G E    +S  A  S          + +  A    A         
Sbjct: 1   MQLPNEFVTKYKKLMGTEADEFLSALAQSSYSGFRENPLKNGQPVATIEKATGKVPYVPT 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +  SL     G  + Q+ SA    ++        VLDLCAAPGGKT      + 
Sbjct: 61  GYYGQVNGKSLDHV-TGWVYSQEPSAMFVGEVVNPQAGERVLDLCAAPGGKTTHLIAKMN 119

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319
           +   + A ++  +R + L  NL+R       +      D   +    FD +LVDAPCS  
Sbjct: 120 NQGLLIANEIFPKRAKILAENLERWGAKNAVVTSESPADLEKQFPQYFDRILVDAPCSGE 179

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ P  +     +   + A  Q+K+L   +  +KPGG +V+S C+   ++ E+ +  
Sbjct: 180 GMFRKEPAGIEYWSPEYPAECANRQQKILASAMKMLKPGGTLVYSTCTFAPEEDEQNISW 239

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFA 435
           +L + P  ++L+P+  A                    +R+ P  L+          G F 
Sbjct: 240 LLNNYP-DLKLIPIEKATGMDDGRPEWADGNEELKKTVRLFPHHLKGE--------GHFI 290

Query: 436 VALR 439
             L 
Sbjct: 291 AKLV 294


>gi|283795445|ref|ZP_06344598.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1]
 gi|291077106|gb|EFE14470.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1]
          Length = 489

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 20/269 (7%)

Query: 184 FDIETWAHKLNAVM---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
            D E +  +    +               +     P    GV+++Q+ SA   V L    
Sbjct: 41  TDRERFREETEFSLKPIPWAEEGYYYGAKDRPGRHPYHEAGVYYIQEPSAMAVVSLLDPK 100

Query: 241 NNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               VLDLCAAPGGKT+ +         + + ++   R   L  N +R+ +    +   D
Sbjct: 101 PGDRVLDLCAAPGGKTSHIASRLQGKGFLLSNEIHPARARILSQNAERMGIANGAVFNED 160

Query: 298 AFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
           +          FD ++VDAPCS  G  R+          D +   A  Q ++L    + +
Sbjct: 161 SARLSAAFPEYFDKIVVDAPCSGEGMFRKDEGARAEWSPDKVRLCAQRQAEILENASAML 220

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPEG 411
           KPGG + +S C+   ++ E+ V+  L++ P      V+  P  S       +        
Sbjct: 221 KPGGTMAYSTCTFSPEEDEQAVEAFLKAHPEFKIKKVKKYPGMSDGVPGWALEGREELSC 280

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +RI P          +G +G F   L +
Sbjct: 281 AVRIWPH--------RTGGEGHFIAILEK 301


>gi|325497021|gb|EGC94880.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia
           fergusonii ECD227]
          Length = 479

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 21/264 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241
            T+   L  +     G  ++   E    + S      G++++Q+AS+ +PV         
Sbjct: 58  ATYNWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 117

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 118 PQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG 177

Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++
Sbjct: 178 RVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR 237

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S C+L+++++E V   +  + P  VE +PL + +        AL+ EG++ + 
Sbjct: 238 PGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGNLFP---GANKALTEEGFLHVF 294

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P + +          GFF   LR+
Sbjct: 295 PQIYDCE--------GFFVARLRK 310


>gi|225679156|gb|EEH17440.1| Yna1p [Paracoccidioides brasiliensis Pb03]
          Length = 664

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 146/366 (39%), Gaps = 43/366 (11%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q+L   +     + +  + +   +  +  A   N +L  +                   +
Sbjct: 227 QLLRSRI--MESIRILSDLSTLGQTGKSRADYTNLLLADICTY-----------YGYTPF 273

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208
             E+L N +      A  +A  SP  + +    ++ +  + A  L    +    +     
Sbjct: 274 LAEKLFNLFPPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 333

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
                      + + P +  G + +Q AS+ +PV       N  +LD+ AAPGG      
Sbjct: 334 VGLQVFESSVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGG------ 387

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSS 318
                V A D SK R + L  N+ RL      +  +DA +  PK    FD +L+DAPCS 
Sbjct: 388 ----CVLANDASKHRAKGLIGNIHRLGCKNTIVSHLDAREAFPKILGGFDRILLDAPCSG 443

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374
           TG I + P V  ++   D +     Q++LLL  I       K GG +V+S CS+  +++E
Sbjct: 444 TGVISKDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVEENE 503

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
            VVQ  LR  P  V++V      + +      +  +   ++   +  +       +DGF+
Sbjct: 504 GVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMGKKFDEKM--ALTRRYYPHRENVDGFY 560

Query: 435 AVALRR 440
              L++
Sbjct: 561 VCKLKK 566


>gi|225389450|ref|ZP_03759174.1| hypothetical protein CLOSTASPAR_03198 [Clostridium asparagiforme
           DSM 15981]
 gi|225044485|gb|EEG54731.1| hypothetical protein CLOSTASPAR_03198 [Clostridium asparagiforme
           DSM 15981]
          Length = 495

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 23/263 (8%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                       +     P    G +++Q+ SA   V+L   +    VLDLCAAPGGKT 
Sbjct: 76  PWVRDGFYYREEDRPGKHPYHEAGAYYIQEPSAMAVVELADPIPGDRVLDLCAAPGGKTT 135

Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
            +         + + ++   R + L  N++R+ +    +         P+    FD ++V
Sbjct: 136 HIASRLKGKGFLLSNEIHPARAKILSQNVERMGVQNAVVTNEAPERLSPRFPEFFDKIVV 195

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        D +   A  Q  +L Q    +KPGG +V+S C+   ++
Sbjct: 196 DAPCSGEGMFRKDPQAADQWSPDHVAMCAARQGDILDQAAGMLKPGGRMVYSTCTFAPEE 255

Query: 373 SEEVVQKVLRSSPIP-------VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKI 423
           +E  V   L   P          E        W  +D    L  +     R+ P  LE  
Sbjct: 256 NEGTVLHFLERHPDFEVEAVNGYEGFDCGKPRWAGVDPETDLGRQLARTFRLFPHRLEGE 315

Query: 424 DGVSSGMDGFFAVALRRLIQ-PK 445
                   G +   L++  + P+
Sbjct: 316 --------GHYMAVLKKRGEAPE 330


>gi|110641953|ref|YP_669683.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 536]
 gi|110343545|gb|ABG69782.1| hypothetical protein YebU [Escherichia coli 536]
          Length = 481

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV       N   
Sbjct: 62  YGWTLTPIPWCEEGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|146292898|ref|YP_001183322.1| Fmu (Sun) domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145564588|gb|ABP75523.1| Fmu (Sun) domain protein [Shewanella putrefaciens CN-32]
          Length = 404

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 138/447 (30%), Gaps = 70/447 (15%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +L+ V+ +   L       +       L   +Q  +  +    LR L      L 
Sbjct: 12  ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALVTGDILRRLNLYCY-LA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +    + R    L        A  L+ D+                         +    
Sbjct: 68  EISPDEMERYGSKLLN------AWHLFHDLP-----------------LPKMQYSLPVDE 104

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
           +R++    +   ++      PEW         GK        A  +     L        
Sbjct: 105 QRLAERIEQAKTQLVLWDGCPEWLDTMGREQLGKSW-EKERAALSTAPKRFLRANGLKVT 163

Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            +    KL A                     ++     F +G++  QDA +         
Sbjct: 164 RDELMAKLAAEYVSTLPVDTVNSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALDA 223

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294
              + V+D CA  GGKT      +    ++ A+DV + +L+KL+    R   Y  +    
Sbjct: 224 KPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAYNVETRLI 283

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                    K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      
Sbjct: 284 ASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILNSYSRM 343

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           VK GGI+V++ CS+   ++   V   L  +P    +                        
Sbjct: 344 VKVGGILVYATCSIFPCENRGQVDAFLAENPNFRLIED---------------------- 381

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 E I    +G DGF+   + R+
Sbjct: 382 ------ETISPADTGFDGFYLAKIERI 402


>gi|222033584|emb|CAP76325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           LF82]
 gi|312946433|gb|ADR27260.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 481

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|193222202|emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiimonas
           arsenicoxydans]
          Length = 453

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 111/450 (24%), Positives = 191/450 (42%), Gaps = 52/450 (11%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  ++ V  + I+L   L   +   A    + + +  ++ I    +R + R +A+L+ +
Sbjct: 33  AAQAVADV-GRGIALPQSLARIF---AQTNATPQARGAIQDISYHCMRHIGRAEALLNAM 88

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-------YLDVADYAVVDLAVEQAKRDKENRHFAKL 123
                      L  LL  ++A I            + + VVD AV  A  D +  H   +
Sbjct: 89  TTKQTE--PPILHGLLCCALALISDPEEAVSGARYSAFTVVDQAVTAAAADTDMAHAKGM 146

Query: 124 VNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           VN+ILRR  RE+  L++  AG        P+W+ +R+ + Y ++   AI +A  +   + 
Sbjct: 147 VNAILRRFLRERDALMKSAAGTQLARWNYPDWWIDRMRSAYPRDW-QAILEAGNAAPPLT 205

Query: 180 LTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
           L V              A +  A  L          P  +  +PGF++G+  VQDA+A +
Sbjct: 206 LRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDAAAQL 265

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA- 290
              L    + + VLD CAAPGGK+  ++ +   ++TALD  +RRL ++  NL RL L A 
Sbjct: 266 AAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQLNAS 325

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             + +     +   K F+ +L D PC+++G +RRHPD+ W R   D V+ A    ++L  
Sbjct: 326 LLVGDATGNSWWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQLAAISAQILDN 385

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               ++  G ++F  CSL  Q+SE         +       P                  
Sbjct: 386 LWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNRAIRLPAPG----------------- 428

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              ++ P             DG F    ++
Sbjct: 429 ---QLLP-----TANAEDDHDGLFYALFQK 450


>gi|312129034|ref|YP_003996374.1| fmu (sun) domain protein [Leadbetterella byssophila DSM 17132]
 gi|311905580|gb|ADQ16021.1| Fmu (Sun) domain protein [Leadbetterella byssophila DSM 17132]
          Length = 395

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 144/443 (32%), Gaps = 75/443 (16%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              L     K+  +  +L              RD+  V       +R    I  +L    
Sbjct: 15  LEALQSAETKK--VDHVLPALLKAQPKWG--SRDRNFVAENTYEVVRNKRFIQFLLGG-- 68

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            ++  +          +    IL                           ++   +   V
Sbjct: 69  DATPSKM---------LGAWLIL-------------------KGLYDPEEEIFRYLDPEV 100

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIET 188
            ++       +     +P+   +R +   G +R    ++A      + L V       + 
Sbjct: 101 IQDNARSDMPLEIRFSLPDELSQRAKRELGDDRWAKEAEAMHGQAPVYLRVNERWITRDK 160

Query: 189 WAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
               L +  +    +        +        L  + +G + +QDA +            
Sbjct: 161 LVSVLLSKDIAVEPVASVPSAIKVLKRAGLNQLEEYKKGFFEIQDAGSQEIAHFLDPQAG 220

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             ++D CA  GGKT  L     + AK+ ALDV + +LE+L     R  +   +    +  
Sbjct: 221 EFIVDTCAGAGGKTLHLADLSRNKAKILALDVEEGKLEELEKRAARNRVSQVETSLWNND 280

Query: 300 DYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                +   DAVL+D PCS  G +RR+PD         I      Q ++L +  + V+ G
Sbjct: 281 ILDQYRGQADAVLMDVPCSGLGVLRRNPDAKELLTEAYIDSIRDVQAEILQKYSALVRKG 340

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V++ CSL   ++E  V++ L +     EL+                      +I P 
Sbjct: 341 GRLVYATCSLLPSENEGQVKRFLENH-GDFELI-------------------KDKQIWPS 380

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
                    +  DGF+   LR+ 
Sbjct: 381 --------ETDFDGFYMALLRKK 395


>gi|148544131|ref|YP_001271501.1| Fmu (Sun) domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|184153502|ref|YP_001841843.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227364558|ref|ZP_03848619.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682327|ref|ZP_08161844.1| NOL1/NOP2/sun family protein [Lactobacillus reuteri MM4-1A]
 gi|148531165|gb|ABQ83164.1| Fmu (Sun) domain protein [Lactobacillus reuteri DSM 20016]
 gi|183224846|dbj|BAG25363.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227070395|gb|EEI08757.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978166|gb|EGC15116.1| NOL1/NOP2/sun family protein [Lactobacillus reuteri MM4-1A]
          Length = 455

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 115/310 (37%), Gaps = 32/310 (10%)

Query: 146 SIIPEWFKERLENFYGKERVLAI-------SDACISPLYIDLTVKFDIETWAHKLNAVML 198
             +P  F  + +   G E    +                 +      IE    K+  V  
Sbjct: 1   MQLPNEFVTKYKKLMGAEADEFLSALAQSSYSGFRENPLKNGQPVATIEKATEKVPYVPT 60

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
              G    +  + +        G  + Q+ SA    ++        VLDLCAAPGGKT  
Sbjct: 61  GYYGQVNGKSLDHVT-------GWVYSQEPSAMFVGEVVNPQAGERVLDLCAAPGGKTTH 113

Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVD 313
               + +   + A ++  +R + L  NL+R       +      D   +    FD +LVD
Sbjct: 114 LIAKMNNQGLLVANEIFPKRAKILAENLERWGAKNAVVTSESPADLEKQFPQYFDRILVD 173

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+ P  +     +   + A  Q+K+L   +  +KPGG +V+S C+   ++ 
Sbjct: 174 APCSGEGMFRKEPAGIEYWSPEYPAECANRQQKILASAMKMLKPGGTLVYSTCTFAPEED 233

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSG 429
           E+ +  +L S P  ++L+P+  A                    +R+ P  L+        
Sbjct: 234 EQNISWLLNSYP-DLKLIPIEKASGMDDGRPEWADGNEELKKTVRLFPHHLKGE------ 286

Query: 430 MDGFFAVALR 439
             G F   L 
Sbjct: 287 --GHFIAKLV 294


>gi|146325692|sp|Q0TGZ7|RSMF_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 479

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV       N   
Sbjct: 60  YGWTLTPIPWCEEGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|300982043|ref|ZP_07175862.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           200-1]
 gi|300307345|gb|EFJ61865.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           200-1]
 gi|324011607|gb|EGB80826.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           60-1]
          Length = 481

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|117619085|ref|YP_855944.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560492|gb|ABK37440.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 437

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 149/421 (35%), Gaps = 56/421 (13%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL-------RVSVA------QIL 94
           LV AIV+  L     +D            + +   +  L       R+S+       Q+ 
Sbjct: 47  LVVAIVDDVLGQGLTLDRAYARHFSGIELKPQEQARIALVTGDLLRRLSLYCALTGIQVR 106

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
             +   + ++       K  + N       N    R    + +    +  +   P W ++
Sbjct: 107 QAEKNVWPLLHSWHAFHKIAQPNHPTLDRFNEEAFRRRLTEAKKNPVL--MDGCPTWLEK 164

Query: 155 RLENFYGKER-VLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT------GGIRLK 206
                 G+       + A +   Y+ +  +K   E     L    + T            
Sbjct: 165 LGSEQLGEAWPAERAALAWMPKRYLRVNSLKCTREELQAALAKEQVTTIPVEGVDSALQV 224

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263
               ++     FA+G +  QDA +            + V+D CA  GGKT     ++   
Sbjct: 225 TSDAALFRTKAFADGWFEQQDAGSQQVAAALEVSPGMRVIDACAGAGGKTLHLAAMMEGK 284

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
            ++ A+DV + +LE L+    R   +     +I         K+  D VL+D PCS  G 
Sbjct: 285 GRLLAMDVEEWKLENLKQRARRAGAHNVETRVITSSKTVKRLKESADRVLLDVPCSGLGV 344

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           ++R+PD  W    + +      Q ++L +    VK GG++V++ CS+  +++ + V K L
Sbjct: 345 LKRNPDAKWRDTAERLPVLVALQAEILQRYSQMVKVGGLLVYATCSILPEENRQQVDKFL 404

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++                             R+  D    +   ++G DGF+   + R+
Sbjct: 405 AANEN--------------------------YRLRDDH--TVSPAATGFDGFYMARIERI 436

Query: 442 I 442
            
Sbjct: 437 A 437


>gi|226329513|ref|ZP_03805031.1| hypothetical protein PROPEN_03422 [Proteus penneri ATCC 35198]
 gi|225202699|gb|EEG85053.1| hypothetical protein PROPEN_03422 [Proteus penneri ATCC 35198]
          Length = 206

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 34/232 (14%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVS 272
           LPGFA+G   VQD SA    +L    N   +LDLCAAPGGKT     I   A+V A+D+ 
Sbjct: 4   LPGFADGWVTVQDRSAQRCAELLAPENKEQILDLCAAPGGKTTHILEIAPQAQVLAIDID 63

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           ++RL++++ NL RL L A  +   D      +C    FD +L+DAPCS+TG IRRHPD+ 
Sbjct: 64  EQRLKRVKENLTRLKLNAV-VKSGDGRYPEKWCAGMQFDRILLDAPCSATGVIRRHPDIK 122

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           W R  DDI + A  Q+++L     ++K GG +V++ CS+  +++++ ++  L S+     
Sbjct: 123 WLRRNDDIEQLAQIQKEILHAIWPYLKSGGTLVYATCSILPEENKQQIEAFLASTKDAQC 182

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                       D   +      G DGFF   ++++
Sbjct: 183 ----------------------------DYQHQCLPEEEGGDGFFYALIKKI 206


>gi|77464024|ref|YP_353528.1| NOL1/NOP2/sun family protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388442|gb|ABA79627.1| possible NOL1/NOP2/sun family protein [Rhodobacter sphaeroides
           2.4.1]
          Length = 387

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 143/451 (31%), Gaps = 77/451 (17%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L  ++         L      S F      D+  VR +V   LR 
Sbjct: 1   MTP--AARLSAAIGILDRIL-GGTPAEQALTNWGRASRFAG--SGDRAAVRDLVFDALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                          L      +   LR++  +           +      A        
Sbjct: 56  RRSFARAGGAETGRGL------VLGGLRMAGQE--------VGDLFTGEGHAPAPPAGSE 101

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPLYI 178
                 + L  +                 P+W    L +  G +    +      +P+++
Sbjct: 102 LKPQAPAELEALD---------------CPDWLAPALRDSLGADFAPVMEALRHRAPVFL 146

Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASA 230
            +   + D    A +L A  + T    L E    +   P        + EG   +QDA++
Sbjct: 147 RVNLARTDRAAAAAELAAEGIVTQPHPLAETALEVTENPRRLQASAAYREGRVELQDAAS 206

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289
              V          VLD CA  GGK+  +         A D   RR+  L     R  + 
Sbjct: 207 QAIVAALPLAPGDRVLDYCAGGGGKSLAMAARAPIDLSAHDADPRRMRDLPERAARAGVK 266

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              +   D     P   FD VL D PCS +G+ RR P+  W+   + + +    Q  +L 
Sbjct: 267 VRRLAPGDPARRGP---FDLVLADVPCSGSGSWRRAPEGKWSLTPERLAELRAIQSTILD 323

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    V+PGG + ++ CSL   ++    +  L  +     +                   
Sbjct: 324 EVAPLVRPGGHLAYATCSLLASENAGQTEAFLERTSGWTRV------------------- 364

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +R+TP           G DGFF   L+R
Sbjct: 365 -HQLRLTP---------LDGGDGFFLDLLQR 385


>gi|315299940|gb|EFU59178.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           16-3]
          Length = 481

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|260868356|ref|YP_003234758.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257764712|dbj|BAI36207.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
          Length = 481

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL+  +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLDDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|332089959|gb|EGI95059.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
           5216-82]
          Length = 325

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|191172977|ref|ZP_03034511.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           F11]
 gi|190906688|gb|EDV66293.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           F11]
          Length = 479

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|221194743|ref|ZP_03567800.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626]
 gi|221185647|gb|EEE18037.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626]
          Length = 480

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 164/456 (35%), Gaps = 47/456 (10%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89
           D         +L ++D+ L   ++  ++  +  +D VL   L       +  L+  LR++
Sbjct: 27  DFLRTSHRMDVLGEKDRALATRLLLGSVSAVGELDRVLASYLPKR-RHLEPKLRDALRLA 85

Query: 90  VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA------ 143
             +ILYL    +  V   VE A+R   +     L N+ILRR++ +    + +        
Sbjct: 86  TFEILYLHTPKHVAVSQGVEMARR--ASAQATGLANAILRRIATDVSPRVDKAYARLRAG 143

Query: 144 ----------GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI-ETWAHK 192
                      +S  P+W  ++L    G      +    + P  + + ++  + +     
Sbjct: 144 NDECLLEDLVCVSGQPDWLCQKLVASMGVSVATPLLLHVLEPAPVYVALREGLSQDVLSA 203

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
            +            E P  + +    A       D S+ +   L  +    ++L++    
Sbjct: 204 FDPYTSIAPQSFFLESPAGLAASDLVARAKVLPADISSQLVALLALSGREKTLLEIGQGR 263

Query: 253 GGKTAQLIVSGA------KVTALDVSKRRLEKLRCNLDRLHLYAEDII------------ 294
           G KT  L  + A       +TA+D+  +++E  R  L    +  +               
Sbjct: 264 GTKTILLQQNAALLNHVLHITAIDIDPQKVEIARKRLVEAAVDNQVTSVVFNAAELGARE 323

Query: 295 -EMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDT---DDIVKSACFQRKL 347
              +     P      FD V +DAPCS  GT+RRHP++ W+ D             Q+ +
Sbjct: 324 ANSEPPCKLPGELAHTFDTVFIDAPCSGAGTLRRHPEIGWSLDEGAVCSDGILPKVQKDI 383

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL-NSAYWKSIDMAM 405
           L+     V   G +V++ CS   ++ E VV+  L        E   +  SA +K +  A 
Sbjct: 384 LVAASRKVAAHGTLVYATCSPLYEEDEAVVEAFLATEEGSSFEPEDIVESAVFKLLSDAG 443

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +     T              D  F   LRR+
Sbjct: 444 KQVVQKAQTKTGYAHFGYQLDILDADQHFLAKLRRI 479


>gi|170683942|ref|YP_001743410.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           SMS-3-5]
 gi|170521660|gb|ACB19838.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           SMS-3-5]
          Length = 481

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|323186840|gb|EFZ72159.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           RN587/1]
          Length = 479

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|324007208|gb|EGB76427.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           57-2]
          Length = 481

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|221056324|ref|XP_002259300.1| methyltransferase [Plasmodium knowlesi strain H]
 gi|193809371|emb|CAQ40073.1| methyltransferase, putative [Plasmodium knowlesi strain H]
          Length = 641

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 126/315 (40%), Gaps = 22/315 (6%)

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKL--- 193
                     E   + L   +  + +    +    P  I L    VK   +   + L   
Sbjct: 218 FYYTYFYEYSEELIKYLYYLFDLKELYWFLEMNNLPKEIHLRTNTVKITRKNLMNILKSQ 277

Query: 194 -----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
                        GI + ++  ++ SL  +  G + +Q AS+ IPV       + +VLD+
Sbjct: 278 NINAEEGENWNNVGIVINDVNSNVGSLNEYMYGYYMIQSASSLIPVLELNVQPDDTVLDM 337

Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCP 303
           CAAPGGK   +     +   V A D++K R + +  N  R+ ++   I   D        
Sbjct: 338 CAAPGGKCTFICALQKNRGFVYANDINKMRCKAIEANASRMGIHNLVITSFDALKVGQKW 397

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
             LFD +++DAPCS TG + ++      +   +I + A  QRKLL   IS VK GGIVV+
Sbjct: 398 NFLFDKIILDAPCSGTGVVNKNKGAR-RKTLKEIRELAQKQRKLLNNAISLVKNGGIVVY 456

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS+  +++E+V+  +L+   + +  +                           +  +I
Sbjct: 457 STCSITVEENEQVINYILKKRDVNILPLDTQIGDPGITHYRKKEFSSKV-----SLCRRI 511

Query: 424 DGVSSGMDGFFAVAL 438
                  D FF   L
Sbjct: 512 YLHKHNYDNFFVAKL 526


>gi|299753547|ref|XP_001833346.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea
           okayama7#130]
 gi|298410351|gb|EAU88451.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea
           okayama7#130]
          Length = 576

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 20/314 (6%)

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
             L +R+        +  E+L   +     +   +A      + +              A
Sbjct: 207 HTLQRRMPSYYGYNYYLAEKLFLLFPVAEAIEFFEANEVSRPVTIRTNTLRTRRRDLAQA 266

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
           ++                + P +  G + +Q AS+ +PV       N  VLD+ +APGGK
Sbjct: 267 LINRGSSKVPSPSC----ATPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAPGGK 322

Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311
           T  +   + +   + A D +K R + L  N+ RL      +   D  ++      FD +L
Sbjct: 323 TTHMAALMQNTGVIFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVMGGFDRIL 382

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCS 367
           +DAPCS TG I +   V   +   D +  +  Q++L+L  I  V    K GG  V+S CS
Sbjct: 383 LDAPCSGTGVISKDSSVKVNKSDRDFILLSHLQKQLILCAIDSVSPDSKTGGYFVYSTCS 442

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDG 425
           +  +++E VV   L+  P  V LV    ++ +        +        P   +  +   
Sbjct: 443 VTVEENEAVVDYALKKRPN-VRLVDTGLSFGR-----EGFTQYRGKTFHPSVKLTRRFYP 496

Query: 426 VSSGMDGFFAVALR 439
               MDGF+    +
Sbjct: 497 HVHNMDGFYVAKFK 510


>gi|323180615|gb|EFZ66160.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           1180]
          Length = 479

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL+  +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLDDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|218689772|ref|YP_002397984.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           ED1a]
 gi|254766865|sp|B7MVW5|RSMF_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|218427336|emb|CAR08231.2| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
           ED1a]
          Length = 479

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|110805371|ref|YP_688891.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5
           str. 8401]
 gi|110614919|gb|ABF03586.1| putative nucleolar proteins [Shigella flexneri 5 str. 8401]
          Length = 481

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298
            V+D+ AAPG KT Q    + +   + A + S   ++ L  N+ R  +    +       
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 181

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           F     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|85374245|ref|YP_458307.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
 gi|84787328|gb|ABC63510.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
          Length = 393

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 142/453 (31%), Gaps = 81/453 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMR----KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  +L  V+     +      ++     ++ +     +D+  VR     
Sbjct: 1   MTP--AARVQAAIDILDRVIDAARSEGAPADRIIADWARNNRYAG--SKDRRAVR----- 51

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
                                               +++Y  +     V      A    
Sbjct: 52  ------------------------------------ELVYSAIRICGEVPETGRAALLAL 75

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
                +        +   E+I   + +A   I P W  E L +           +A +  
Sbjct: 76  AEEDTSLRECFDGSQYGPERIGEEEGVASRGIAPGWLTEALAHSGVSHE---EREALLGR 132

Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
             +D+ +       ET     +   L             +   P + +G   VQD  + +
Sbjct: 133 APLDIRINTLKASTETVELPQDGEPLALPNALRFASGTQVEQWPAYRDGKIEVQDLGSQL 192

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
             +        +VLDLCA  GGKT   A  +    ++ A D   RR  +L    +R    
Sbjct: 193 ACRAADARPGETVLDLCAGAGGKTLALAASMELRGRLIASDTDLRRGRQLLPRAERAGAA 252

Query: 290 AEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
             +   +D               D VLVDAPCS TGT RR P+  W      + + A  Q
Sbjct: 253 GIETRLLDPGRELEVLGDLTGQVDCVLVDAPCSGTGTWRRKPEAKWRLTPHALQRYADLQ 312

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             LL      VKPGG VVF  CSL   +  +  +  L  +      +P         ++ 
Sbjct: 313 DHLLDVAARLVKPGGRVVFVTCSLLDAEGPDRFEAFLVGNSRWEADIP---------ELP 363

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +       IR++P           G DGFF   
Sbjct: 364 LGRQRGKGIRLSP--------FHDGTDGFFIAR 388


>gi|257096807|sp|B1LD37|RSMF_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 479

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|91793095|ref|YP_562746.1| Fmu (Sun) [Shewanella denitrificans OS217]
 gi|91715097|gb|ABE55023.1| Fmu (Sun) [Shewanella denitrificans OS217]
          Length = 404

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 147/442 (33%), Gaps = 56/442 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  ++LS V+ +   L       +       L   +Q  V  +V   LR L      L 
Sbjct: 12  ELVINILSMVLSQHKPLDRAYSQHFS---GLTLPPSEQARVTQVVGDILRKLNLYCY-LA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            +      R    L          I + L++ +          A +        +L ++ 
Sbjct: 68  DIQPEEFERLGSKLLN-----AWHIFHGLELPNMQ-------YALQVNLEDFETRLAHAK 115

Query: 128 LRRVSREKIELLQRIAGISIIPE-WFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
            +    +         G   + + W  ER       +R + +++   +   +      + 
Sbjct: 116 TQAPLWDGCPQWLDELGSEQLGDAWPLERAALSLAPKRFIRVNELKCTKAQL-----IER 170

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                     +             ++     F  G +  QDA + +          + V+
Sbjct: 171 LAKEAVEAIEVEGVDSALEVISDSALFRTETFKAGWFEQQDAGSQLVAAALDAKPGMRVV 230

Query: 247 DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDY 301
           D CA  GGKT      +    ++ A+DV + +L+ L+    R   +     II       
Sbjct: 231 DACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKIRARRAGAHNVETRIIASSKTIK 290

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             K   D VL+D PCS  G ++R+PD  W    + +      Q+++L      VK  GI+
Sbjct: 291 RMKLTADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPILMALQKQILQSYSRMVKVDGIL 350

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ CS+   ++   V   L  +P  V L+  N                           
Sbjct: 351 VYATCSIMPAENRLQVDAFLAENPQFVLLMDEN--------------------------- 383

Query: 422 KIDGVSSGMDGFFAVALRRLIQ 443
            I    SG DGF+   ++R+ +
Sbjct: 384 -ITVADSGFDGFYLAKMQRVSE 404


>gi|156121251|ref|NP_001095773.1| NOL1/NOP2/Sun domain family, member 5 [Bos taurus]
 gi|151556204|gb|AAI49961.1| NSUN5 protein [Bos taurus]
 gi|296472990|gb|DAA15105.1| NOL1/NOP2/Sun domain family, member 5 [Bos taurus]
          Length = 462

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 175/455 (38%), Gaps = 42/455 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           M     ++ +L+ V  ++ SL   +    + +             + A+V  T R+   +
Sbjct: 1   MAVYSAAAAVLAGVESRQGSLKGLVYASNFQNVKQ----------LYALVCETQRYSAVL 50

Query: 64  DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD--KENRHF 120
           DAV+    L+ +  + +  L ++L   V  +L L               +R   +     
Sbjct: 51  DAVIANAGLLRAEKKLRPHLAKVL---VYDLL-LGKGFRGRGGRWKPLLERHQARLKAEL 106

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           A+L        + + +E+  +    S +P + +  +     ++ +        S      
Sbjct: 107 ARLKVRQGVSRNEDLLEVGSKPGSASQVPRFVRVNILKTCAEDAIDYFKRQGFSYQG-RA 165

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +   DI     K   +      + +      + + P +  G   +QD ++ +P  L    
Sbjct: 166 SSLNDIRALKGKCFLLDPLLPELLVFPAQTDLHNHPLYQAGHLILQDKASCLPAMLLAPP 225

Query: 241 NNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               V+D CAAPG KT+ L     +  K+ A D   +RL  +   L R  +   ++ E D
Sbjct: 226 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDQDAKRLASMATLLARAGVSCCELAEQD 285

Query: 298 AFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT--DDIVKSACFQRKLLLQG 351
                P          +L+D  CS +G   R  +   +     + +   A FQ++ L   
Sbjct: 286 FLAVSPSDQRYCQVQYILLDPSCSGSGMPSRQLEEPKSCTPSPERLRALAAFQQRALSHA 345

Query: 352 ISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           ++F  ++    +V+S CS+ ++++E+VV+  L+ SP    L P+  + W    ++     
Sbjct: 346 LTFPALR---RLVYSTCSVCQEENEDVVRAALQQSPGAFRLAPVLPS-WPHRGLSAFPGA 401

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           E  +R +P+             GFF   L R+ +P
Sbjct: 402 EHCLRASPETTL--------TGGFFIAVLERVEEP 428


>gi|254443830|ref|ZP_05057306.1| NOL1/NOP2/sun family protein [Verrucomicrobiae bacterium DG1235]
 gi|198258138|gb|EDY82446.1| NOL1/NOP2/sun family protein [Verrucomicrobiae bacterium DG1235]
          Length = 419

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 103/452 (22%), Positives = 159/452 (35%), Gaps = 62/452 (13%)

Query: 5   MNARLVSSHLLSC---VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            N R +S  L+     +++     T  L   +          +D+ L R ++   LR+LP
Sbjct: 16  HNQRRISYSLIERSRTLLQPGTPFTRELHELFRS--QGKFGSKDRRLYRELIYTYLRYLP 73

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            +D +                         Q  ++D     ++ LA   A+         
Sbjct: 74  WLDPIYKE----------------------QQKFMDT----LICLAAPTAEIQSLYPTLP 107

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI------SDACISP 175
                 +    R K+   +      ++P+WF +          +L +             
Sbjct: 108 DKQPPEIPADQRFKLLGREAHEISELLPDWFGKHTNRPVSSRSLLHLLTRPPLWLRVQKD 167

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIP 233
              DL  +        +   +            P    +  LP F EG+  +QD S+ I 
Sbjct: 168 PNNDLLAQLRAAATPEQAEQITKHPLIPDCIHAPADFSLGELPCFLEGLVEIQDISSQIL 227

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
           +QL       + LD CA  GGKT QL        KV A D     + +L+  L R  L  
Sbjct: 228 LQLLKDRPTGNWLDACAGAGGKTLQLAKALQPSGKVAAYDPRPSAIRELQSRLKRSGLRN 287

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
             ++         +  +D VLVDAPCS +GT RRHP +L      D++K A  Q  +L  
Sbjct: 288 ASVL----DRRPTEGAYDGVLVDAPCSGSGTWRRHPYLLRQTRERDVLKYAETQLDILKN 343

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               V  GGI+V+S CSL + ++EEV QK L S P   +  PL S Y             
Sbjct: 344 YAPLVAQGGILVYSTCSLSRHENEEVAQKFLESRP-EFQRQPLASRYGYEDT-------- 394

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                       +       DG +    RR  
Sbjct: 395 -------GHGITVYPEDHNGDGLYVTTFRRTT 419


>gi|157157684|ref|YP_001463137.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           E24377A]
 gi|253773210|ref|YP_003036041.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260844181|ref|YP_003221959.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|297517982|ref|ZP_06936368.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           OP50]
 gi|300924905|ref|ZP_07140836.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           182-1]
 gi|300928863|ref|ZP_07144369.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           187-1]
 gi|301327598|ref|ZP_07220815.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           78-1]
 gi|157079714|gb|ABV19422.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli
           E24377A]
 gi|253324254|gb|ACT28856.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|257759328|dbj|BAI30825.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|300418923|gb|EFK02234.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           182-1]
 gi|300463153|gb|EFK26646.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           187-1]
 gi|300845847|gb|EFK73607.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           78-1]
 gi|323961889|gb|EGB57488.1| NOL1/NOP2/sun family protein [Escherichia coli H489]
          Length = 481

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|331657881|ref|ZP_08358843.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli TA206]
 gi|320194451|gb|EFW69082.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
           WV_060327]
 gi|331056129|gb|EGI28138.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli TA206]
          Length = 479

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|218699594|ref|YP_002407223.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           IAI39]
 gi|226725335|sp|B7NS84|RSMF_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|218369580|emb|CAR17349.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
           IAI39]
          Length = 479

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|215487048|ref|YP_002329479.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312967035|ref|ZP_07781253.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           2362-75]
 gi|254766863|sp|B7USL2|RSMF_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|215265120|emb|CAS09508.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288499|gb|EFR16401.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           2362-75]
          Length = 479

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|24051702|gb|AAN42992.1| putative nucleolar proteins [Shigella flexneri 2a str. 301]
          Length = 406

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 45  YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 104

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298
            V+D+ AAPG KT Q    + +   + A + S   ++ L  N+ R  +    +       
Sbjct: 105 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 164

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           F     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 165 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 224

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 225 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 281

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 282 IYDCE--------GFFVARLRK 295


>gi|146325706|sp|Q0T529|RSMF_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|146325707|sp|Q83RJ3|RSMF_SHIFL RecName: Full=Putative ribosomal RNA small subunit
           methyltransferase F; AltName: Full=16S rRNA m5C1407
           methyltransferase; AltName: Full=rRNA
           (cytosine-C(5)-)-methyltransferase rsmF
 gi|332762420|gb|EGJ92685.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri 4343-70]
 gi|333004220|gb|EGK23751.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri K-218]
          Length = 479

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298
            V+D+ AAPG KT Q    + +   + A + S   ++ L  N+ R  +    +       
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 179

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           F     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|254488907|ref|ZP_05102112.1| rRNA small subunit methyltransferase B [Roseobacter sp. GAI101]
 gi|214045776|gb|EEB86414.1| rRNA small subunit methyltransferase B [Roseobacter sp. GAI101]
          Length = 386

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 130/399 (32%), Gaps = 50/399 (12%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L+ +  + +     +      S F     +D+  VR  V   LR 
Sbjct: 1   MTPG--ARVSAAIEILNAM-AEGLPAEQAMTRWARSSRFAG--SKDRAAVRDYVFDVLRQ 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                                     L +    +L    AD   +      A +   +  
Sbjct: 56  RRTAAYFGGGETGR-----------ALMIG---LLRAQGADLETLFTGEGHAPQPLADA- 100

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                        +   +     A +  +P+W         G ++  A++ A  S   I 
Sbjct: 101 ------------EQTVPDAPTDTATLWNLPDWIIPDFNESLG-DQAEAVAFALQSRAPIT 147

Query: 180 LTVK----------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           L V             +        A       + + E    I + P + EG   +QDAS
Sbjct: 148 LRVNLAQSNPGSVSAQLSDLGIDTRANPRAPSALTVVEGERKIRNSPLYLEGKVELQDAS 207

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   V          VLD CA  GGK     +  G +V A D+  RR+  L     R   
Sbjct: 208 SQAIVAAMP--KAGRVLDYCAGGGGKALGIAMYPGTEVFAHDIDPRRMSDLPARAARAGC 265

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I   D      K  FD VL DAPCS +G  RR  +  WT     + +    Q  +L
Sbjct: 266 VIPQIETED---LPAKAPFDVVLCDAPCSGSGAWRRSAEGKWTLTAARLEELTHIQDSIL 322

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                     G +V++ CS+ K ++E+ ++  L   P  
Sbjct: 323 DAAAELTTENGCLVYATCSVLKFENEDRIKAFLTRHPDW 361


>gi|281178902|dbj|BAI55232.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 481

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|191168496|ref|ZP_03030283.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B7A]
 gi|193066047|ref|ZP_03047104.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           E22]
 gi|194429657|ref|ZP_03062175.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B171]
 gi|218695401|ref|YP_002403068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           55989]
 gi|254161895|ref|YP_003045003.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B
           str. REL606]
 gi|254766864|sp|B7L7N7|RSMF_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|257096803|sp|A7ZMV8|RSMF_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|190901449|gb|EDV61211.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B7A]
 gi|192926284|gb|EDV80921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           E22]
 gi|194412299|gb|EDX28603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B171]
 gi|218352133|emb|CAU97871.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
           55989]
 gi|242377556|emb|CAQ32311.1| 16S rRNA m[5]C1407 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253973796|gb|ACT39467.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253977990|gb|ACT43660.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|320198015|gb|EFW72623.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
           EC4100B]
 gi|323158681|gb|EFZ44695.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           E128010]
 gi|323186416|gb|EFZ71764.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           1357]
 gi|332343560|gb|AEE56894.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 479

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|323972658|gb|EGB67861.1| NOL1/NOP2/sun family protein [Escherichia coli TA007]
          Length = 481

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|126462869|ref|YP_001043983.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104533|gb|ABN77211.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 387

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 141/451 (31%), Gaps = 77/451 (17%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L  ++         L      S F      D+  VR +V   LR 
Sbjct: 1   MTP--AARLSAAIGILDRIL-GGTPAEQALTNWGRASRFAG--SGDRAAVRDLVFDALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                          L      +   LR++                   E A+      H
Sbjct: 56  RRSFARAGGAETGRGL------VLGGLRMA-----------------GQEVAELFTGEGH 92

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPLYI 178
                                        P+W    L +  G +    +      +P+++
Sbjct: 93  APAPPAGSELEPQAPAELDALDC------PDWLAPALRDSLGADFAPVMEALRHRAPVFL 146

Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASA 230
            +   + D    A +L A  + T    L E    +   P        + EG   +QDA++
Sbjct: 147 RVNLARTDRAAAAAELAAEGIATQPHPLAETALEVTENPRRLQASAAYREGRVELQDAAS 206

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289
              V      +   VLD CA  GGK+  +         A D   RR+  L     R    
Sbjct: 207 QAIVAALPLASGDRVLDYCAGGGGKSLAMAARAPIDLSAHDADPRRMRDLPERAARAGAE 266

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              +   D     P   FD VL D PCS +G+ RR P+  W+   + + +    Q  +L 
Sbjct: 267 VRRLAPGDPARRGP---FDLVLADVPCSGSGSWRRAPEGKWSLTPERLAELRAIQSTILD 323

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    V+PGG + ++ CSL   ++       L  SP    +                   
Sbjct: 324 EVAPLVRPGGHLAYATCSLLASENAGQTDAFLERSPGWARV------------------- 364

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +R+TP           G DGFF   L+R
Sbjct: 365 -HQLRLTP---------LDGGDGFFLDLLQR 385


>gi|317131030|ref|YP_004090344.1| RNA methylase, NOL1/NOP2/sun family [Ethanoligenens harbinense
           YUAN-3]
 gi|315469009|gb|ADU25613.1| RNA methylase, NOL1/NOP2/sun family [Ethanoligenens harbinense
           YUAN-3]
          Length = 471

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 99/234 (42%), Gaps = 16/234 (6%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTAL 269
              P    GV+++Q+ SA   V          VLDLCAAPGGK+ Q+         + A 
Sbjct: 87  GRHPWHHAGVFYLQEPSAMSAVTALDPRPGQRVLDLCAAPGGKSTQIAARLGGQGLLVAN 146

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           ++   R + L  NL+R  +    +     +         FDAVLVDAPCS  G  RR P 
Sbjct: 147 EIVPGRAKILLSNLERFGVRNACVYNETPERLCAAFPGFFDAVLVDAPCSGEGMFRREPA 206

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                  +     A  QR +L    + ++PGG++V+S C+   +++E VV   L+ +P  
Sbjct: 207 AAAEWTPETPAACARRQRAILDWAKTALRPGGVLVYSTCTFAPEENECVVAAFLKENPDF 266

Query: 388 -VELVPLNSAYWKSIDMAMA-LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            +E +P         D      S E   RI P           G +G F   LR
Sbjct: 267 SMEPIPCAFGRPARPDWGGGEPSLELARRIFPQ---------DGGEGHFVARLR 311


>gi|331647332|ref|ZP_08348426.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli M605]
 gi|331044115|gb|EGI16251.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli M605]
          Length = 481

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|301025409|ref|ZP_07188961.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           196-1]
 gi|299880085|gb|EFI88296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           196-1]
          Length = 464

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 45  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 104

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 105 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 164

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 165 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 224

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 225 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 281

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 282 IYDCE--------GFFVARLRK 295


>gi|194439069|ref|ZP_03071152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           101-1]
 gi|194422028|gb|EDX38032.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           101-1]
          Length = 479

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|74311854|ref|YP_310273.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sonnei
           Ss046]
 gi|73855331|gb|AAZ88038.1| putative nucleolar proteins [Shigella sonnei Ss046]
          Length = 481

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|294012545|ref|YP_003546005.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S]
 gi|292675875|dbj|BAI97393.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S]
          Length = 391

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 146/455 (32%), Gaps = 77/455 (16%)

Query: 1   MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  +M        +   L+   + +  +     RD+  VR  V  
Sbjct: 1   MTPS--ARVQAAIELLDAIMASARDGGPAADTLIARYFKERRYAG--SRDRRAVRDHVYD 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R           V       +         V +A                 E A    
Sbjct: 57  AVRR----------VAERPESGRAA------MVGLA-------------RERAELAALFD 87

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            + H    +                  A   ++P W +  L      ER   +  A +  
Sbjct: 88  GSAHGPAPIAHSEA------------GAPAGVVPGWIEPLL--AAPVERDALLGRAPVDL 133

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
               L    D     +     +              +     +  G   VQDA + +   
Sbjct: 134 RVNRLKGAPDRVAQHYPDAVRIAGLPDALRLPEGAPVEQSDPWKWGQVEVQDAGSQLISA 193

Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                  ++V+DLCA  GGKT   A  +     + A D  + RL +L    DR      +
Sbjct: 194 ACAAAPGMTVIDLCAGAGGKTLALAAAMGGKGVLIAADTIRSRLARLDPRADRAGATFIE 253

Query: 293 IIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
            + +D           K   D VLVDAPCS TGT RR+P+  W      + + A  Q ++
Sbjct: 254 TLLLDQGHEAGALESLKGRADVVLVDAPCSGTGTWRRNPEARWRLTPARLDRLAAEQARI 313

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      + PGG ++++ C+L  ++  + V+  L                 + I+ AM  
Sbjct: 314 LDFAAPLLAPGGALIYAVCALTDREGRDQVRAFLERHDGWTV---------ERIEAAMGR 364

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +    + +TP           G DGF+   LRR  
Sbjct: 365 AHGDGLLLTPGH--------DGTDGFYFARLRRTA 391


>gi|161485915|ref|NP_707285.2| putative nucleolar proteins [Shigella flexneri 2a str. 301]
 gi|332760448|gb|EGJ90737.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri 2747-71]
 gi|332767094|gb|EGJ97289.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri
           2930-71]
          Length = 421

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298
            V+D+ AAPG KT Q    + +   + A + S   ++ L  N+ R  +    +       
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 179

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           F     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|331653241|ref|ZP_08354246.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli M718]
 gi|331049339|gb|EGI21411.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli M718]
          Length = 481

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDIAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|260855695|ref|YP_003229586.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|300904700|ref|ZP_07122533.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           84-1]
 gi|301304407|ref|ZP_07210519.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           124-1]
 gi|257754344|dbj|BAI25846.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|300403367|gb|EFJ86905.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           84-1]
 gi|300840258|gb|EFK68018.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           124-1]
 gi|315257353|gb|EFU37321.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           85-1]
          Length = 481

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|323449480|gb|EGB05368.1| hypothetical protein AURANDRAFT_59367 [Aureococcus anophagefferens]
          Length = 373

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 126/308 (40%), Gaps = 26/308 (8%)

Query: 156 LENFYGKERVLAISDACISPLYI--DLTVKFDIETWAHKLNAVMLPTGGIRLK------- 206
           L  F   E V  +         +    T+K   +  A  L    +    +          
Sbjct: 64  LTIFSPSECVEFMDANDKPRPVVIRTNTLKTRRKDLAQTLIKRGVHLEPMAAWSKVALKI 123

Query: 207 -ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
            E    + + P +  G + +Q A++  PV   G      VL+L AAPGGK++     + +
Sbjct: 124 TESSVPVGATPEYLAGHYMLQSAASQCPVLALGPEPGERVLELAAAPGGKSSYCAQLMKN 183

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGT 321
              +   D+ K R +    NL RL +    +   D   +      FD VL+DAPC+  G 
Sbjct: 184 SGTLVCNDLKKERHKATVANLHRLGVSNAVVCCHDGRAFPGVMGGFDRVLLDAPCTGLGV 243

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV--KPGGIVVFSNCSLDKQDSEEVVQK 379
           I R   +  TR  +D+ K A  Q++L+L  I  V  K  G+VV+S CS+   ++E+VVQ 
Sbjct: 244 ISRDQSIKGTRTLEDVKKLAHLQKELILAAIDSVDDKKAGVVVYSTCSVAVLENEDVVQY 303

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVA 437
            L    + +    L  A         A    G  R  P M    +    +  MDGFF   
Sbjct: 304 ALDKRNVKLVDAGLPFA-------CDAFVRCGQKRYHPSMALARRFYPHTHNMDGFFVAK 356

Query: 438 LRRLIQPK 445
           L++L  PK
Sbjct: 357 LQKLS-PK 363


>gi|330911643|gb|EGH40153.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           AA86]
          Length = 479

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|301645651|ref|ZP_07245579.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           146-1]
 gi|301076080|gb|EFK90886.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           146-1]
          Length = 481

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCGEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|146325708|sp|Q3Z2H4|RSMF_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|323166480|gb|EFZ52243.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella sonnei
           53G]
          Length = 479

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|147921688|ref|YP_684492.1| tRNA/rRNA cytosine-C5-methylase [uncultured methanogenic archaeon
           RC-I]
 gi|110619888|emb|CAJ35166.1| putative tRNA/rRNA cytosine-C5-methylase (Nop2/Sun family)
           [uncultured methanogenic archaeon RC-I]
          Length = 316

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 119/309 (38%), Gaps = 20/309 (6%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVML--- 198
           A      E+   R             S       YI +  +K        +L        
Sbjct: 14  AKKYKYNEYMVARFARLVPDLEKFLESMEAPPATYIRVNTLKIAPNALLKRLTDKGFTLK 73

Query: 199 ---PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
                    +   P SI +      G ++VQD S+ IP          +V+D+ A+PGGK
Sbjct: 74  PADIPDCFEVTGEPYSIGASAEHLLGYFYVQDKSSMIPPLALAPNPGDTVIDMAASPGGK 133

Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311
           T  +   + +   + A++    R+  LR N+ R  +    I  MDA +        D +L
Sbjct: 134 TTHIAQLMNNEGLIVAIEKEPGRIPSLRTNIGRCGVMNTAIYNMDALEADKIGVKADKIL 193

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           +DAPC+  G I R      +R+  DI   +  Q +L+   +  +KPGG +V+S CS   +
Sbjct: 194 LDAPCTGEGVIARDRSRKTSREEADIQFCSTVQHELIDAALKVLKPGGTLVYSTCSYAPE 253

Query: 372 DSEEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           ++E ++   ++   + V+ VP       K   +  A   +   R+ P +           
Sbjct: 254 ENELIIDYAVKKYGLKVDPVPYGVPGIEKFGSLTFAPEVKNARRMYPHI--------HNT 305

Query: 431 DGFFAVALR 439
            GFF   LR
Sbjct: 306 TGFFVARLR 314


>gi|256022501|ref|ZP_05436366.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
           4_1_40B]
 gi|300951450|ref|ZP_07165288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           116-1]
 gi|300956658|ref|ZP_07168934.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           175-1]
 gi|331642446|ref|ZP_08343581.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli H736]
 gi|260449044|gb|ACX39466.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli DH1]
 gi|300316536|gb|EFJ66320.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           175-1]
 gi|300449302|gb|EFK12922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           116-1]
 gi|315136478|dbj|BAJ43637.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli DH1]
 gi|331039244|gb|EGI11464.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli H736]
          Length = 481

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|323948280|gb|EGB44268.1| NOL1/NOP2/sun family protein [Escherichia coli H120]
          Length = 479

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|323153088|gb|EFZ39356.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           EPECa14]
          Length = 479

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|193069919|ref|ZP_03050868.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           E110019]
 gi|192956819|gb|EDV87273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           E110019]
          Length = 479

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|188494314|ref|ZP_03001584.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           53638]
 gi|188489513|gb|EDU64616.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           53638]
          Length = 481

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|254511064|ref|ZP_05123131.1| NOL1/NOP2/sun family protein [Rhodobacteraceae bacterium KLH11]
 gi|221534775|gb|EEE37763.1| NOL1/NOP2/sun family protein [Rhodobacteraceae bacterium KLH11]
          Length = 387

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 140/453 (30%), Gaps = 80/453 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  ++     +   L      S F     +D+  +R  V   LR 
Sbjct: 1   MTP--AARVQAAIGILDDIL-SGAPVEKALTGWARRSRFAG--SKDRAAIRDHVFDALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENR 118
                            R      + L +    +    +              +  + ++
Sbjct: 56  KRSF-----------AARGGAGTGRGLMIGA--LRSSGIDPALIFTGEGYAPTQLTERDQ 102

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-Y 177
             A   ++                     IPEW     +    +    A   +      +
Sbjct: 103 GRALQTDAE-----------------RLDIPEWLWPAFQASLAEAAEPAAVASQSRAPVH 145

Query: 178 IDLT-VKFDIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDAS 229
           + +   K D+      L A  +        +           +     FA G+  +QDA+
Sbjct: 146 LRVNLAKTDVPAAIRALAAEGIQAQPHPACDTALEVVEGARKLSQGAAFAAGLVELQDAA 205

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           +   +        + VLD CA  GGKT       SG +V A D +  R+  L     R  
Sbjct: 206 SQAVIAALDLQPGMRVLDYCAGGGGKTLALAARGSGVQVFAHDANPGRMRDLPARAQRAG 265

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                + +        +  FD VLVD PCS +G+ RR P   W    D + +    Q  +
Sbjct: 266 ADIAILTQ---DQVAARAPFDIVLVDVPCSGSGSWRRAPAGKWALTQDRLHELTEIQASI 322

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      V  GG + ++ CS+ + +++ VV   L++ P                      
Sbjct: 323 LTNVAPLVAGGGTLAYATCSMLRVENDAVVDGFLQAHPDW-------------------- 362

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              G+ +           VS G DGF+   L R
Sbjct: 363 -KSGFRKTW--------LVSHGTDGFYTAHLTR 386


>gi|89108675|ref|AP_002455.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111341|ref|NP_416349.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|170081491|ref|YP_001730811.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|238901050|ref|YP_002926846.1| putative methyltransferase [Escherichia coli BW2952]
 gi|307138495|ref|ZP_07497851.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           H736]
 gi|3915994|sp|P76273|RSMF_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|226725337|sp|B1XHA3|RSMF_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|259495488|sp|C4ZZJ2|RSMF_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|85675140|dbj|BAA15648.2| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|87081985|gb|AAC74905.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|169889326|gb|ACB03033.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238862668|gb|ACR64666.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|323940499|gb|EGB36690.1| NOL1/NOP2/sun family protein [Escherichia coli E482]
          Length = 479

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|257871095|ref|ZP_05650748.1| NOL1/NOP2/sun family protein [Enterococcus gallinarum EG2]
 gi|257805259|gb|EEV34081.1| NOL1/NOP2/sun family protein [Enterococcus gallinarum EG2]
          Length = 454

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 13/226 (5%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I   +        VLDLCAAPGGKT Q    +     + + ++  +
Sbjct: 76  HQAGYVYSQEPSAMIVATIADAQPGEKVLDLCAAPGGKTTQLASQMQGKGLLVSNEIFTK 135

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    +      +  P     FD ++VDAPCS  G  R+ P  +   
Sbjct: 136 RAKILSENVERWGISNVVVTNHAPQELTPHFPQFFDKIVVDAPCSGEGMFRKDPVAIAEW 195

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D  ++ A  Q+++L + ++ +KPGG +++S C+   +++E +++ ++ + P  +E + 
Sbjct: 196 QADSPLQCAQRQKEILAEAVAMLKPGGQLIYSTCTFAPEENEAIIEWLVSAYPFSIEPIE 255

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L +      D A     E  IR+ P   +          G FA  L
Sbjct: 256 LENVSHGRHDWAPMNDIEKTIRLWPHKNQGE--------GHFAAKL 293


>gi|323175088|gb|EFZ60702.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           LT-68]
          Length = 479

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|209919201|ref|YP_002293285.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           SE11]
 gi|256017977|ref|ZP_05431842.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
 gi|300824225|ref|ZP_07104343.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           119-7]
 gi|307314087|ref|ZP_07593699.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W]
 gi|331677714|ref|ZP_08378389.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli H591]
 gi|332279011|ref|ZP_08391424.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
 gi|209912460|dbj|BAG77534.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300523296|gb|EFK44365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           119-7]
 gi|306906225|gb|EFN36742.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W]
 gi|315061138|gb|ADT75465.1| predicted methyltransferase [Escherichia coli W]
 gi|323378285|gb|ADX50553.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli KO11]
 gi|324018025|gb|EGB87244.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           117-3]
 gi|331074174|gb|EGI45494.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli H591]
 gi|332101363|gb|EGJ04709.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9]
          Length = 481

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|322493784|emb|CBZ29073.1| putative nucleolar protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 625

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 125/313 (39%), Gaps = 24/313 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195
               E+  + +   +     +   +A        + V          + A          
Sbjct: 227 YEYSEFLMDAVLQLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEP 286

Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++ E    I     +  G + +Q A++ +PV       N  VLD+ AAPGG
Sbjct: 287 LEKWSKVGLQVFESNVPIAGTIEYLAGHYMLQAAASFLPVMALAPQENDRVLDMSAAPGG 346

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310
           KT  +   + +   + A DVS+ R + L  NL RL +    +   D   Y    + FD V
Sbjct: 347 KTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGTGYERVMRNFDRV 406

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS TG I R   +  ++  +DI +++  QR LLL  I   K GG VV+S CS   
Sbjct: 407 LLDAPCSGTGIISRDKSIKTSKQYEDIQRASQLQRALLLGAIDACKIGGYVVYSTCSFLV 466

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--PDMLEKIDGVSS 428
           ++ E +V   LR   + V  + L              +     R     ++  +      
Sbjct: 467 EEDEAIVDFALRRRDLQVVEMGLPFGRP-------GFTKYRHHRYHNSLELSRRYFPHVH 519

Query: 429 GMDGFFAVALRRL 441
            MDGFF   +++L
Sbjct: 520 NMDGFFICKMKKL 532


>gi|218509188|ref|ZP_03507066.1| probable RNA methyltransferase - sun protein [Rhizobium etli Brasil
           5]
          Length = 250

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 104/205 (50%), Positives = 136/205 (66%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +++ L   LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA +  +L S LP 
Sbjct: 46  VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 105

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
              +L  +L +  AQILYLDV D++ VDLAVEQA +D  NR FAKLVN++LRR+ REK  
Sbjct: 106 GARALHHVLSIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDA 165

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197
           +L  I  ++ +P WF  RLE  YG++  LAIS + + P  IDLTVK D E WA +LN V 
Sbjct: 166 VLAEIGKVAPMPSWFLARLEKAYGRDAALAISRSQLEPAAIDLTVKSDAEGWAKRLNGVA 225

Query: 198 LPTGGIRLKELPESIVSLPGFAEGV 222
           LPTGG+RL      I SL GF EG 
Sbjct: 226 LPTGGVRLAAFDGGIPSLEGFDEGA 250


>gi|320183016|gb|EFW57882.1| Ribosomal RNA small subunit methyltransferase F [Shigella flexneri
           CDC 796-83]
          Length = 479

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|56696906|ref|YP_167268.1| NOL1/NOP2/sun family protein [Ruegeria pomeroyi DSS-3]
 gi|56678643|gb|AAV95309.1| NOL1/NOP2/sun family protein [Ruegeria pomeroyi DSS-3]
          Length = 391

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 146/454 (32%), Gaps = 82/454 (18%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  ++         L      S F     +D+  +R  V   LR 
Sbjct: 1   MTP--AARLQSAIEVLDEILA-GKPAEQALTGWARRSRFAG--SKDRAALRDHVFDALRA 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLR---VSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                A         L      +  L R   ++VA + +  +          EQA     
Sbjct: 56  RRSFAARGGAETGRGL------ILGLCRAQGLAVADL-FTGIGHAPAPLTPEEQAGGRDP 108

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-YGKERVLAISDACISP 175
                                     A  + IP+W   R E     +           +P
Sbjct: 109 APG-----------------------AEAADIPDWLWPRFEASLGARAEAAGQVMQSRAP 145

Query: 176 LYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQD 227
           +++ +   + D  +    L    +        +           I     + +G+  +QD
Sbjct: 146 VHLRVNTARTDRASAIAALAGEGIVAQPHPACDTALEVTEGARGIARSAAYLDGLVELQD 205

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A++   V        + VLD CA  GGKT     V G +V A D + +R+  L     R 
Sbjct: 206 AASQAIVAALPLAPGMRVLDYCAGGGGKTLALAAVPGIEVFAHDAAPQRMRDLPARAARA 265

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +  +D  +      FD VL DAPCS +G+ RR P   W    +        QR+
Sbjct: 266 GA---QVRLLDTAEAARMAPFDLVLADAPCSGSGSWRRAPAGKWELSEEKFAALLAVQRE 322

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L    +   PGG++ ++ CS+  ++++  VQ  L +    +                  
Sbjct: 323 ILHCAAALTAPGGVLAYATCSMLSEENDGAVQAFLDTGGWKL------------------ 364

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +   R           V SG DGFF   L R
Sbjct: 365 ---DDCHR---------WDVLSGTDGFFLALLTR 386


>gi|218554409|ref|YP_002387322.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           IAI1]
 gi|293446207|ref|ZP_06662629.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B088]
 gi|331668527|ref|ZP_08369375.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli TA271]
 gi|226725336|sp|B7M2B1|RSMF_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|257096806|sp|B6IBR3|RSMF_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|218361177|emb|CAQ98760.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
           IAI1]
 gi|291323037|gb|EFE62465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B088]
 gi|324118895|gb|EGC12784.1| NOL1/NOP2/sun family protein [Escherichia coli E1167]
 gi|331063721|gb|EGI35632.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli TA271]
          Length = 479

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|320181122|gb|EFW56041.1| Ribosomal RNA small subunit methyltransferase F [Shigella boydii
           ATCC 9905]
          Length = 479

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNTPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|300917592|ref|ZP_07134245.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           115-1]
 gi|300415192|gb|EFJ98502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           115-1]
          Length = 481

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 Y--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGVAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCMWLKETYPDAVEFLPLGELFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|82543759|ref|YP_407706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii
           Sb227]
 gi|81245170|gb|ABB65878.1| putative nucleolar proteins [Shigella boydii Sb227]
          Length = 481

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|187732363|ref|YP_001880634.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii CDC
           3083-94]
 gi|187429355|gb|ACD08629.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii
           CDC 3083-94]
          Length = 481

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|328950272|ref|YP_004367607.1| RNA methylase, NOL1/NOP2/sun family [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450596|gb|AEB11497.1| RNA methylase, NOL1/NOP2/sun family [Marinithermus hydrothermalis
           DSM 14884]
          Length = 450

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 119/313 (38%), Gaps = 21/313 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISD--ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
              P+ F  R+ +  G+E    +    A      + +            L+   L     
Sbjct: 1   MRFPKAFLHRMHDLLGEEYPAFLKALTAQDRSYGLRVNTLKLEPRAFQALSPWPLEPIPW 60

Query: 204 RLKELPESIVS----LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258
             +       +     P F  G++++Q+ SA     L        VLDL AAPGGKT   
Sbjct: 61  CPEGFYYPPEARPGPHPYFYAGLYYIQEPSAQAVGVLAAPKPGERVLDLAAAPGGKTTHL 120

Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAP 315
              +     + A +V  RR+  L  N++R     A     ++         FD V++DAP
Sbjct: 121 AARMQGQGLLIANEVDGRRVRGLLENVERWGARLAVVSARVEQLAQAWGGYFDRVVLDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P+ +         +++  QR+L+L   + V+PGG++V++ C+   +++E 
Sbjct: 181 CSGEGMFRKDPEAVRHWGPGSPARASRIQRRLILAAAALVRPGGVLVYATCTFAPEENEA 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSGMDG 432
           VV  +L + P            +     A        E   R+ P  L           G
Sbjct: 241 VVAALLEAHPEFEVEDARFHPAFAPGVPAWGGGEVRLERTARLWPHRLRGE--------G 292

Query: 433 FFAVALRRLIQPK 445
            +   LRR   P+
Sbjct: 293 HYLARLRRTDGPE 305


>gi|171060673|ref|YP_001793022.1| sun protein [Leptothrix cholodnii SP-6]
 gi|170778118|gb|ACB36257.1| sun protein [Leptothrix cholodnii SP-6]
          Length = 453

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 136/350 (38%), Gaps = 36/350 (10%)

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIA-----GISIIPEWFKERLENFYGKERV 165
           A         A  VN++LRR  RE+  L+ R            P W+ ++L+  + K+  
Sbjct: 118 ACAHVRAPASASFVNAVLRRFLRERDALVPRWEAADPVVRHQHPRWWIDQLQRDWPKQWQ 177

Query: 166 LAISDACISPLY-IDLTVKFD-----IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
             +  A       + +  +           A       + +    +   P  + +LPGF 
Sbjct: 178 ALLGAANQHAPMALRVNARQTDAAGYRAELAAIGIEAQVVSSHALVLHKPAPVQALPGFE 237

Query: 220 EGVWWVQDASASIPVQL------FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD-VS 272
            G   VQD SA +   L              VLD CAAPGGKTA L+           V 
Sbjct: 238 RGRVSVQDLSAQVAAPLLIGSGPDRLAPGARVLDACAAPGGKTAHLLELAELDLLALDVD 297

Query: 273 KRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             RL ++   L R+ L A        +   +   + FDA+L+DAPCS++G +RRHPDV W
Sbjct: 298 ATRLARVEQTLQRVGLRAALAVADAGEPSRWWDGQPFDAILLDAPCSASGIVRRHPDVRW 357

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            R   DI   A  Q +LL      +KPGG +V++ CS+ + +    V   L+ +P  +  
Sbjct: 358 LRRASDIKALAATQSRLLDALWGLLKPGGRLVYATCSVFRAEGSGQVAAFLQRTPGAIAR 417

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            P        +D                        S   DGFF   L +
Sbjct: 418 -PSPGHLLGVVDNPAQAGE---------------VASVAGDGFFYARLDK 451


>gi|300816275|ref|ZP_07096497.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           107-1]
 gi|300530965|gb|EFK52027.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           107-1]
          Length = 481

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV       N   
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAAQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 Y--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGVAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCMWLKETYPDAVEFLPLGELFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|333003634|gb|EGK23170.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri VA-6]
          Length = 479

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +       
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFGGRV 179

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           F     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGASVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|261408370|ref|YP_003244611.1| Fmu (Sun) domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261284833|gb|ACX66804.1| Fmu (Sun) domain protein [Paenibacillus sp. Y412MC10]
          Length = 534

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 26/260 (10%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E     P +  G++++Q+ SA  PV+L        VLDLCAAPGGK+ 
Sbjct: 60  PWCPTGYYIQEGERPGRHPYYHAGLYYIQEPSAMAPVELLDVTPGDRVLDLCAAPGGKST 119

Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           Q+         + + D+   R + L  NL+   +    ++  +           F  +L+
Sbjct: 120 QIAAKLKGQGMLISNDLHPDRTKALAKNLEMYGVRNAVVLNEEPERIAGAFPEFFTKILI 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+   +L   +    +K A  QR +L    + + PGG +V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDESMLKYWEESSPLKFAEMQRDILKSAAAMLCPGGRLVYSTCTFSPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------RITPDML 420
           +E ++ + L   P    +VP++ + + S      ++ +G +            R+ P  +
Sbjct: 240 NEGMIAEFLSEHP-DFRVVPVDHSEFFSPGETDWMAGQGNVKDDVLGQLAGTARLWPHKV 298

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                      G F   L+R
Sbjct: 299 RGE--------GHFMAVLQR 310


>gi|320177052|gb|EFW52072.1| Ribosomal RNA small subunit methyltransferase F [Shigella
           dysenteriae CDC 74-1112]
          Length = 479

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|196249240|ref|ZP_03147939.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. G11MC16]
 gi|196211469|gb|EDY06229.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. G11MC16]
          Length = 454

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 129/310 (41%), Gaps = 24/310 (7%)

Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             +PE F  +++       +   A+ +   +       +K   ++WA      + P    
Sbjct: 1   MRLPEAFVAKMKKLLHEEADEFFAVYENEKTNGLRVNPLKTSPDSWAKMAPFSLTPVPFC 60

Query: 204 RLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 +        P  A G++++Q+ SA    +        +VLDLCAAPGGKT Q  
Sbjct: 61  PTGFYYDRSEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGETVLDLCAAPGGKTTQLG 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
            ++ +   + A ++  +R++ L  N++RL L    ++         +    FD +LVDAP
Sbjct: 121 AMMENKGLLVANEIHPKRVKALAENVERLGLTNTVVVNETPEALAERFPGFFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+  +         + + A  QR++L    + +K GGI+V+S C+   +++E+
Sbjct: 181 CSGEGMFRKEEEAASFWSQAYVEECAARQRRILQSAYAMLKEGGILVYSTCTFSPEENEQ 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSGM 430
            ++ +L++    + +VP+                     E   R+ P  ++         
Sbjct: 241 TIEWLLQTY-DDLRMVPIEKTGGIEPGRPEWTKTNRAELEHAARLWPHRVKGE------- 292

Query: 431 DGFFAVALRR 440
            G F   L++
Sbjct: 293 -GHFIAKLQK 301


>gi|227524487|ref|ZP_03954536.1| tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227088357|gb|EEI23669.1| tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
          Length = 467

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 18/303 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ FK +     G++  L    +          +    +     +N  +        
Sbjct: 1   MQLPDDFKNKYTKLLGQQEALQFLASFSKTANHGFRLNPLKQN--QPVNIDLSHPTAHCQ 58

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +         G  + Q+ SA    ++        VLDLCAAPGGKT      + 
Sbjct: 59  LGYYGDVSGKTVAHQSGAVYSQEPSAMYVGEVAAPKPGERVLDLCAAPGGKTTHVGSYMA 118

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319
           +   + A ++  +R + L  N++R  L    +          +    FD +LVDAPCS  
Sbjct: 119 NLGLLIANEIDHKRSKVLMENVERFGLTNTIVTNSTPEIIAKQLPNFFDRILVDAPCSGE 178

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +     D   + A  QR++L + +  +KPGG +++S C+   ++ E+++  
Sbjct: 179 GMFRKDPDAVSYWSLDYPEECATRQRQILNETVKNLKPGGELIYSTCTFAPEEDEQIIAW 238

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +++     +  V                +P+    +RI P+            +G F   
Sbjct: 239 LVKQYHFDILPVKKFPGMDSGRPDWADGNPDLVNCVRIFPNHF--------NGEGHFIAK 290

Query: 438 LRR 440
           L++
Sbjct: 291 LKK 293


>gi|242398230|ref|YP_002993654.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sibiricus MM 739]
 gi|242264623|gb|ACS89305.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sibiricus MM 739]
          Length = 310

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 17/257 (6%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +   +     G  L   P SI S P +  G+ ++Q+AS+  P           + D+ AA
Sbjct: 63  QFKRISWAREGFCLTREPFSITSTPEYLGGLIYIQEASSMYPPVALEPKPGEIIADMAAA 122

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLF 307
           PGGKT+ +   + +   + A DV + RL++ R NL RL +     I +   +       F
Sbjct: 123 PGGKTSYMAQLMKNKGVIYAFDVGRDRLKETRLNLSRLGVTNTILIHKSSLYMGELGIEF 182

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L+DAPC+ +GTI ++P+    R  +D+      Q +++   +  +K GG++V+S CS
Sbjct: 183 DKILLDAPCTGSGTIHKNPERKADRTIEDVKFCQNLQMQMIKVALENLKVGGVLVYSTCS 242

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK---SIDMAMALSPEGWIRITPDMLEKID 424
           L+ +++E V+Q  L +    + L+PL           D+ ++       R  PD      
Sbjct: 243 LEPEENEFVIQWALDNF--DIALLPLRFGEPALTSPFDIELSSELAKARRFYPD------ 294

Query: 425 GVSSGMDGFFAVALRRL 441
                  GFF   +++ 
Sbjct: 295 --EHNTSGFFVAKIQKK 309


>gi|222529210|ref|YP_002573092.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456057|gb|ACM60319.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 455

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 19/307 (6%)

Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200
             +PE F  ++        ++ + I D      +   T K  ++ +  K+      +   
Sbjct: 1   MNLPEEFLSKMREILNDEFDQFIKIYDFDSYKGFRVNTAKVSVKEFIDKMGIEFERIPWC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                      +   P +  G+ ++Q+ SA  PV+         VLDLCAAPGGK+ Q  
Sbjct: 61  KDGFFYTEELRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315
             +     + + DV   R++ L  N++ L L    I+     +        FD +LVDAP
Sbjct: 121 ARLGQNGLLISNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P       ++   K    QR ++ +    +K GG +V+S C+ + +++E 
Sbjct: 181 CSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEVEENEG 240

Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           ++   L+      V  +     +   I++    + +  +RI P  +           G F
Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAVRIYPHRVRGE--------GHF 292

Query: 435 AVALRRL 441
              LR++
Sbjct: 293 ICKLRKV 299


>gi|170290689|ref|YP_001737505.1| RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174769|gb|ACB07822.1| RNA methylase, NOL1/NOP2/sun family [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 329

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 28/311 (9%)

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA--------HKLNAVMLPT 200
           PE+ +   E    +        A      I +        W          +L+ +    
Sbjct: 26  PEFERRYRELLGDEYETFLSFMAKRPVPSIRVNPMKIDPEWLLSVLRANGWELSQIPWYG 85

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
            G R+   PE + +      G+++VQ+A++ +P  L        VLDL A+PG K  Q  
Sbjct: 86  YGYRVIRGPERLGNTEWHQLGLYYVQEAASMVPPVLLSPKPGERVLDLAASPGSKATQIS 145

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDA 314
            +++    V A DVS  R++ L  N+ R+      +   D         ++ FD VL+D+
Sbjct: 146 EMMLYKGLVVANDVSPERVDSLSSNVQRMGSMNVVVTMFDGRRAPDVLGRESFDKVLLDS 205

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCSS G +RR    L      ++ K +  Q  L       +KPGG++V+S C+ + +++E
Sbjct: 206 PCSSLGEVRRSWGALARWSPRNVEKISRLQVSLAKAAYETLKPGGLMVYSTCTFEPKENE 265

Query: 375 EVVQKVLR-----SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
            VV K+L        P    LV       K +D       E  +RI P          + 
Sbjct: 266 WVVYKLLEIGAVIEEPEVKGLVW-RKGLRKWMDWDFGNEMEKCMRIYPQD--------ND 316

Query: 430 MDGFFAVALRR 440
             GFF   LR+
Sbjct: 317 TIGFFIAVLRK 327


>gi|257096822|sp|B2U477|RSMF_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 479

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|146325704|sp|Q321Y0|RSMF_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|332096600|gb|EGJ01594.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii
           3594-74]
          Length = 479

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|309794215|ref|ZP_07688639.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           145-7]
 gi|308122120|gb|EFO59382.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           145-7]
          Length = 481

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P+ VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPVAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|221639886|ref|YP_002526148.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221160667|gb|ACM01647.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides KD131]
          Length = 387

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 144/451 (31%), Gaps = 77/451 (17%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L  ++         L      S F      D+  VR +V   LR 
Sbjct: 1   MTP--AARLSAAIGILDRIL-GGTPAEQALTNWGRASRFAG--SGDRAAVRDLVFDALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                          L      +   LR++  +           +      A        
Sbjct: 56  RRSFARAGGAETGRGL------VLGGLRMAGQE--------VGDLFTGEGHAPAPPAGSE 101

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPLYI 178
                 + L  +                 P+W    L +  G +    +      +P+++
Sbjct: 102 LKPQAPAELEALD---------------CPDWLAPALRDSLGADFAPVMEALRHRAPVFL 146

Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASA 230
            +   + D    A +L A  + T    L E    +   P        + EG   +QDA++
Sbjct: 147 RVNLARTDRAAAAAELAAEGIVTQPHPLAETALEVTENPRRLQASAAYREGRVELQDAAS 206

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289
              V      +   VLD CA  GGK+  +         A D   RR+  L     R    
Sbjct: 207 QAIVAALPLASGDRVLDYCAGGGGKSLAMAARAPIDLSAHDADPRRMRDLPERAARAGA- 265

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             ++  +       +  FD VL D PCS +G+ RR P+  W+   + + +    Q  +L 
Sbjct: 266 --EVRRLAPGAPERRGPFDLVLADVPCSGSGSWRRAPEGKWSLTPERLAELRAIQSTILD 323

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    V+PGG + ++ CSL   ++       L  SP    +                   
Sbjct: 324 EVAPLVRPGGHLAYATCSLLASENAGQTDAFLERSPGWARV------------------- 364

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +R+TP           G DGFF   L+R
Sbjct: 365 -HQLRLTP---------LDGGDGFFLDLLQR 385


>gi|138895319|ref|YP_001125772.1| tRNA and rRNA cytosine-C5-methylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266832|gb|ABO67027.1| tRNA and rRNA cytosine-C5-methylase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 457

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 129/308 (41%), Gaps = 24/308 (7%)

Query: 148 IPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
           +PE F  +++       +   A+ +   +       +K   ++WA      + P      
Sbjct: 6   LPEAFVAKMKKLLHEEADEFFAVYENEKTNGLRVNPLKTSPDSWAKMAPFSLTPVPFCPT 65

Query: 206 KELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
               +        P  A G++++Q+ SA    +        +VLDLCAAPGGKT Q   +
Sbjct: 66  GFYYDRSEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGETVLDLCAAPGGKTTQLGAM 125

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCS 317
           + +   + A ++  +R++ L  N++RL L    ++         +    FD +LVDAPCS
Sbjct: 126 MENKGLLVANEIHPKRVKALAENVERLGLTNTVVVNETPEALAERFPGFFDKILVDAPCS 185

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+  +         + + A  QR++L    + +K GGI+V+S C+   +++E+ +
Sbjct: 186 GEGMFRKEEEAASFWSQAYVEECAARQRRILQSAYAMLKEGGILVYSTCTFSPEENEQTI 245

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSGMDG 432
           + +L++    + +VP+                     E   R+ P  ++          G
Sbjct: 246 EWLLQTY-DDLRMVPIEKTGGIEPGRPEWTKTNRAELEHAARLWPHRVKGE--------G 296

Query: 433 FFAVALRR 440
            F   L++
Sbjct: 297 HFIAKLQK 304


>gi|308068497|ref|YP_003870102.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus polymyxa E681]
 gi|305857776|gb|ADM69564.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus polymyxa E681]
          Length = 558

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 32/314 (10%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLY-------IDLTVKFDIETWAHKLNAVMLP 199
            +P  F +R       +   A   A     +       + + ++   E    +L  +   
Sbjct: 8   QLPTAFVKR-MEQLLGDEFEAFMTAYDHTPHAGIRVNTLKIPMEDFKERSPFELRPIPWC 66

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
             G  +    +     P +  G+++VQ+ SA  PV+L     + +VLDLCAAPGGK+ Q+
Sbjct: 67  ATGFYIPHGTKP-GLHPYYHAGLYYVQEPSAMSPVELLNVAQDEAVLDLCAAPGGKSTQI 125

Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDA 314
                    +   D+S  R + L  N++   +    ++    D         FD +L+DA
Sbjct: 126 AAKLQGSGVLVTNDISADRTKALAKNVELYGVRNAVVLNESPDRIAAAFPHFFDKILIDA 185

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+  D+    +T  + K    QR +L    S +  GG +V+S C+   +++E
Sbjct: 186 PCSGEGMFRKDEDMAKQWETHSVDKCVVMQRDILRVAASMLSAGGRIVYSTCTFAPEENE 245

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---------GWIRITPDMLEKIDG 425
            ++ + L + P   ++VP+ S    +      +S E         G  R+ P ++E    
Sbjct: 246 GMIAEFLEAHP-DFDVVPVPSEAGFAPGHPEWMSEEVAAAHPELRGTARLWPHLVEGE-- 302

Query: 426 VSSGMDGFFAVALR 439
                 G F   L+
Sbjct: 303 ------GHFIAVLQ 310


>gi|145298386|ref|YP_001141227.1| Fmu (Sun)/ nucleolar NOL1/Nop2p [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851158|gb|ABO89479.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 403

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 150/420 (35%), Gaps = 56/420 (13%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFV---LISSLPRKKYSLQ---QLLR-VSVA------QIL 94
           LV AIV+  L     +D         +      +         LLR +S+       Q+ 
Sbjct: 13  LVVAIVDDVLGQGLTLDRAYARHFSGIEIKPQEQARIALVTGDLLRRLSLYCALTGIQVR 72

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
             +   + ++       K  + N       N    R    + +    +  +   P W ++
Sbjct: 73  QAEKNVWPLLHSWHAFHKIVQSNHPTLDRFNEEAFRRRLTEAKKNPVL--MDGCPAWLEK 130

Query: 155 RLENFYGKER-VLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT------GGIRLK 206
                 G+       + A +   Y+ +  +K   E     L    + T            
Sbjct: 131 LGSEQLGEAWPAERAALAWMPKRYLRVNTLKCTREQLQAALAKEQVNTIPVEGVATALQV 190

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263
               ++     FA+G +  QDA + +          + V+D CA  GGKT     ++   
Sbjct: 191 TSDAALFRTKAFADGWFEQQDAGSQLVAAALEVTPGMRVIDACAGAGGKTLHIAAMMQGK 250

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
            ++ A+DV + +LE L+    R   +     +IE        K   D VL+D PCS  G 
Sbjct: 251 GRLLAMDVEEWKLENLKQRARRAGAHNVETRVIESSKTVKRLKGTADRVLLDVPCSGLGV 310

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           ++R+PD  W    + +      Q ++L +    VK GG++V++ CS+  Q++ + V K L
Sbjct: 311 LKRNPDAKWRDTAERLPVLVALQEEILQRYSQMVKVGGLLVYATCSILPQENRQQVDKFL 370

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++                             R+  D    +   ++G DGF+   + R+
Sbjct: 371 AANDN--------------------------YRLRDDH--TVSPSATGFDGFYMARIERI 402


>gi|256811186|ref|YP_003128555.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus fervens
           AG86]
 gi|256794386|gb|ACV25055.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus fervens
           AG86]
          Length = 265

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 124/255 (48%), Gaps = 25/255 (9%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                     + + P SI S P +  G +  Q  S+ IP  +        +LD+CAAPGG
Sbjct: 28  KETFLDYAFEVIKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPKEQDFILDMCAAPGG 87

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKL 306
           KT  L   + +   + A+++SK R++ L+ N++R+ +    II  D   Y       +  
Sbjct: 88  KTTHLAQLMKNNGTIVAVEISKTRVKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIF 147

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L+DAPCS      +  +V      +DI   +  Q++L+  GI  +K GG +V+S C
Sbjct: 148 FDKILLDAPCSGNIIKDKDRNV----SKEDIKYCSLRQKELIDIGIDLLKEGGELVYSTC 203

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           S++ +++EEV++ +L+     VEL+ +N   +K I++      EG +R+ P         
Sbjct: 204 SMEIEENEEVIRYILQKR-DDVELIKINKDEFKGINVKSGYI-EGTLRVFPPNEP----- 256

Query: 427 SSGMDGFFAVALRRL 441
                 FF   LR++
Sbjct: 257 ------FFIAKLRKI 265


>gi|333006730|gb|EGK26227.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri K-272]
 gi|333018648|gb|EGK37941.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri K-227]
          Length = 479

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +       
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFGGRV 179

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           F     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|218548605|ref|YP_002382396.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia
           fergusonii ATCC 35469]
 gi|226725339|sp|B7LPL0|RSMF_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|218356146|emb|CAQ88763.1| putative RNA AdoMet-dependent methyltransferase [Escherichia
           fergusonii ATCC 35469]
          Length = 479

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GADKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|194434523|ref|ZP_03066782.1| ribosomal RNA small subunit methyltransferase F [Shigella
           dysenteriae 1012]
 gi|194417235|gb|EDX33345.1| ribosomal RNA small subunit methyltransferase F [Shigella
           dysenteriae 1012]
 gi|332093311|gb|EGI98370.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           dysenteriae 155-74]
          Length = 479

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|227513344|ref|ZP_03943393.1| tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227083217|gb|EEI18529.1| tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577]
          Length = 467

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 18/303 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ FK +     G++  L    +          +    +     +N  +        
Sbjct: 1   MQLPDDFKNKYTKLLGQQETLQFLASFSKTANHGFRLNPLKQN--QPVNIDLSHPTAHCQ 58

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                ++         G  + Q+ SA    ++        VLDLCAAPGGKT      + 
Sbjct: 59  LGYYGNVSGKTVAHQSGAVYSQEPSAMYVGEVAAPKPGERVLDLCAAPGGKTTHVGSYMA 118

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319
           +   + A ++  +R + L  N++R  L    +          +    FD +LVDAPCS  
Sbjct: 119 NLGLLIANEIDHKRSKVLMGNVERFGLTNTIVTNSTPEIIAKQLPNFFDRILVDAPCSGE 178

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +     D   + A  QR++L + +  +KPGG +++S C+   ++ E+++  
Sbjct: 179 GMFRKDPDAVSYWSLDYPEECATRQRQILNETVKNLKPGGELIYSTCTFAPEEDEQIIAW 238

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +++     +  V                +P+    +RI P+            +G F   
Sbjct: 239 LVKQYHFDILPVKKFPGMDSGRPDWADGNPDLVNCVRIFPNHF--------NGEGHFIAK 290

Query: 438 LRR 440
           L++
Sbjct: 291 LKK 293


>gi|124804351|ref|XP_001347976.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23496230|gb|AAN35889.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 634

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 11/252 (4%)

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                   GI +K++  ++ SL  +  G + +Q +S+ +PV       +  VLD+CAAPG
Sbjct: 257 EGESWNHVGITIKDVNTNVGSLNEYLYGYYIIQSSSSLMPVLELNIQEDDMVLDMCAAPG 316

Query: 254 GKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFD 308
           GK   +         V A D++K R + +  +  R+ +    +  +DA          FD
Sbjct: 317 GKCTFMCTLKKNRGVVYANDINKLRCKAIEAHASRMGINNLIVTCIDALKIQKHLTFQFD 376

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L+DAPCS TG + ++      +   +I   A  Q+ LL   I+ +K GGIVV+S CS+
Sbjct: 377 KILLDAPCSGTGVVNKNKTAR-RKTIKEIRDLAQKQKILLNNAINLLKNGGIVVYSTCSI 435

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
             +++E+V+  +L+   + +    +N                        + ++I     
Sbjct: 436 SVEENEQVINYILKKRDVNLLPTNINIGDPGITQYRKKQFSSKI-----SLCKRIYLHKH 490

Query: 429 GMDGFFAVALRR 440
             D FF   L +
Sbjct: 491 NHDNFFIAKLIK 502


>gi|254576911|ref|XP_002494442.1| ZYRO0A01562p [Zygosaccharomyces rouxii]
 gi|238937331|emb|CAR25509.1| ZYRO0A01562p [Zygosaccharomyces rouxii]
          Length = 617

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 26/253 (10%)

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260
           ++ +    I + P +  G + +Q AS+ +PV       N  +LD+ AAPGGKT  +   +
Sbjct: 309 QIFDSQVPIGATPEYLAGNYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISALM 368

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319
            +   V A D +K R + L  N+ RL      +   DA ++      FD +L+DAPCS T
Sbjct: 369 KNTGCVFANDANKSRTKSLVANIHRLGCTNTIVCNYDAREFPRVIGGFDRILLDAPCSGT 428

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEE 375
           G I +   V  +R   D ++    Q++LLL  I  V    K GGI+V+S CS+  ++ E+
Sbjct: 429 GVIGKDQSVKVSRTEKDFMQIPHLQKQLLLSAIDSVDSHSKTGGIIVYSTCSVAVEEDEQ 488

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-----IRITPD--MLEKIDGVSS 428
           VV   LR  P             K I+  +A+  EG+      +  P   +  +    + 
Sbjct: 489 VVDYALRKRPN-----------IKLIETGLAIGKEGFASYRGKKFHPSLKLTRRYYPHTY 537

Query: 429 GMDGFFAVALRRL 441
            +DGFF    ++L
Sbjct: 538 NVDGFFVAKFQKL 550


>gi|156842997|ref|XP_001644568.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115214|gb|EDO16710.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 633

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 148/372 (39%), Gaps = 32/372 (8%)

Query: 92  QILYLDVADYAVVDLAV-EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
           +++     D   V   + E  K  ++ R+ A    +  R  +     LL+ I        
Sbjct: 203 ELMADQPPDLTAVRTRILEIVKVLEDFRNLA----AEGRSRTEYIDRLLKDICSYFGYSP 258

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE 207
           +  E++ N +     L   +A   P  I +            A  L    +    I    
Sbjct: 259 FLAEKIFNLFSPAEALEFFEANEVPRPISIRTNTLKTRRRDLAQALVNKGVNLQPIGAWT 318

Query: 208 LPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
                       I +   +  G + +Q AS+ +PV       N  VLD+ AAPGGKT  +
Sbjct: 319 KVGLQIFDSQVPIGATSEYLAGQYILQAASSFLPVVALDPQENERVLDMAAAPGGKTTYI 378

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAP 315
              + +   V A D +K R + L  N+ RL      +   DA ++      FD +L+DAP
Sbjct: 379 SALMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFDRILLDAP 438

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371
           CS TG I +   V  +R   D ++    Q++LLL  I  V    K GG++V+S CS+  +
Sbjct: 439 CSGTGVIGKDQSVKSSRTEKDFIQIPHLQKQLLLSAIDSVDANSKTGGVIVYSTCSVAVE 498

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSG 429
           + E VV   LR  P  V+LV    A  K        +     +  P   +  +    +  
Sbjct: 499 EDEAVVDYALRKRPN-VKLVESGLAIGK-----EGFTSFRGKKFHPSLKLTRRYYPHTYN 552

Query: 430 MDGFFAVALRRL 441
           +DGF+    +++
Sbjct: 553 VDGFYVAKFQKI 564


>gi|293415150|ref|ZP_06657793.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B185]
 gi|291432798|gb|EFF05777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B185]
          Length = 479

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAALSEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|309702059|emb|CBJ01373.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|323937093|gb|EGB33373.1| NOL1/NOP2/sun family protein [Escherichia coli E1520]
          Length = 479

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGVILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEVVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|114793858|pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
           From E.Coli
 gi|114793859|pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
           From E.Coli
 gi|114793860|pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
           From E.Coli
 gi|114793861|pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
           From E.Coli
          Length = 479

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V D+ AAPG KT Q      +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVXDVAAAPGSKTTQISARXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEXFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|312135035|ref|YP_004002373.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           owensensis OL]
 gi|311775086|gb|ADQ04573.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           owensensis OL]
          Length = 455

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 19/307 (6%)

Query: 146 SIIPEWFKERLENF--YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200
             +PE F  +++       E+ + I +      +   T K  +E +  K+      +   
Sbjct: 1   MNLPEEFLSKMKEILKEEFEQFIKIYEFDSYKGFRVNTAKVSVEEFVDKMGIEFEKVPWC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                      +   P +  G+ ++Q+ SA  PV+         VLDLCAAPGGK+ Q  
Sbjct: 61  KDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315
             +     + + DV   R++ L  N++ L L    ++     +        FD +LVDAP
Sbjct: 121 ARLGQNGLLVSNDVKPTRIKALVKNVENLGLTNVVVLNNKPKEIAESYGAYFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P       ++   K    QR ++ +    +K GG +V+S C+ + +++E 
Sbjct: 181 CSGEGMFRKDPTTAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEVEENEG 240

Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           ++   L+      V  +     +   I++    + +  +RI P  +           G F
Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAVRIYPHRVRGE--------GHF 292

Query: 435 AVALRRL 441
              L+++
Sbjct: 293 ICKLKKV 299


>gi|329929423|ref|ZP_08283171.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Paenibacillus sp.
           HGF5]
 gi|328936510|gb|EGG32955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Paenibacillus sp.
           HGF5]
          Length = 534

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 26/260 (10%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E     P +  G++++Q+ SA  PV+L        VLDLCAAPGGK+ 
Sbjct: 60  PWCPTGYYIQEGERPGRHPYYHAGLYYIQEPSAMAPVELLDVTPGDRVLDLCAAPGGKST 119

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           Q+         + + D+   R + L  NL+   +    ++  +           F  +L+
Sbjct: 120 QIAAKLQGQGVLISNDLHPDRTKALAKNLEMYGVRNAVVLNEEPERIAGAFPEFFTKILI 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+   +L   +    +K A  QR +L    + + PGG +V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDESMLKYWEESSPLKFAEMQRDILKSAAAMLCPGGRLVYSTCTFSPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------RITPDML 420
           +E ++ + L   P    +VP++ + + S      ++ +G +            R+ P  +
Sbjct: 240 NEGMIAEFLSEHP-DFRVVPVDHSEFFSPGETDWMASQGNVKDDVLGQLAGTARLWPHKV 298

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                      G F   L+R
Sbjct: 299 RGE--------GHFMAVLQR 310


>gi|218281416|ref|ZP_03487880.1| hypothetical protein EUBIFOR_00445 [Eubacterium biforme DSM 3989]
 gi|218217428|gb|EEC90966.1| hypothetical protein EUBIFOR_00445 [Eubacterium biforme DSM 3989]
          Length = 444

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 18/248 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG---G 254
             T         +     P +  G++++Q+ SA +P Q+     N  VLD CAAPG    
Sbjct: 58  PWTNDGFYYSSEDKPSKHPYYYAGLYYLQEPSAMLPAQVLPVDENDIVLDTCAAPGGKST 117

Query: 255 KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           K A  +     + + D+S  R + L  N++        +   D  +        FD +LV
Sbjct: 118 KLATKLNHTGLLISNDISSSRCQGLLKNVELFGCDNAWVTSEDLTNMEQHYPETFDKILV 177

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ PD++ +    D       Q+ +L   +S +KPGG +V+S C+    +
Sbjct: 178 DAPCSGEGMFRKEPDLIKSWIEKDDTFYPPIQKNILNAAVSMLKPGGSIVYSTCTFSIHE 237

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +EEV+Q VL   P  + LVP+         M   ++ E  +R+ P  ++          G
Sbjct: 238 NEEVIQDVLDKHP-DLHLVPIEKID----GMMPGINMEECVRLYPHKIKGE--------G 284

Query: 433 FFAVALRR 440
            F   L +
Sbjct: 285 HFVALLVK 292


>gi|146278411|ref|YP_001168570.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556652|gb|ABP71265.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 399

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 147/454 (32%), Gaps = 81/454 (17%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L  ++         L      S F      D+  VR +V   LR 
Sbjct: 13  MTP--AARLSAAIGILDRIL-TGAPAEQALTNWARASRFAG--SGDRAAVRDLVFDALRC 67

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKEN 117
                 +        L      +   LR S  +I  L+   A         E A +    
Sbjct: 68  RRSFARLGGAGTGRGL------ILGGLRASGQEIAALFTGEAHAPAPPEGPELAPQAASE 121

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPL 176
                                          P+W    L+   G +    +      +P+
Sbjct: 122 LEALDC-------------------------PDWLAPDLQASLGADFAPVMEALRHRAPV 156

Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDA 228
           ++ +   + D  T A  L    + T    L +           I +   + +G+  +QDA
Sbjct: 157 FLRVNLARGDRPTVAAGLAIEGIATRSHPLADTALEVTGNARRIQTSAAYRDGLVELQDA 216

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           ++   V+         VLD CA  GGK  A    +  ++ A D   RR+  L     R  
Sbjct: 217 ASQAVVEALPLEEGARVLDFCAGGGGKSLAMAGRARLRLWAHDADPRRMRDLPARAARAG 276

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
               D+  +   +      FD VL D PCS +G+ RR P+  W+   + +      Q  +
Sbjct: 277 ---VDVRLLAPGEPARHGPFDLVLADVPCSGSGSWRRAPEGKWSLTPERLQALLGIQSGI 333

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L +  + V+PGG + ++ CSL   ++       L  S     +                 
Sbjct: 334 LDETAALVRPGGHLAYATCSLLGCENGLQTDAFLARSGGWRRVR---------------- 377

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +R+TP           G DGFF   L R+
Sbjct: 378 ----QLRLTP---------LDGGDGFFLDLLERI 398


>gi|300899079|ref|ZP_07117364.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           198-1]
 gi|300357288|gb|EFJ73158.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           198-1]
          Length = 481

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 21/264 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241
            ++   L  +     G  ++   E    + S      G++++Q+AS+ +PV         
Sbjct: 60  ASYGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 119

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 120 PQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDG 179

Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      + 
Sbjct: 180 RVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALC 239

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + 
Sbjct: 240 PGGTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVF 296

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P + +          GFF   LR+
Sbjct: 297 PQIYDCE--------GFFVARLRK 312


>gi|56807939|ref|ZP_00365759.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Streptococcus
           pyogenes M49 591]
          Length = 320

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 135/304 (44%), Gaps = 17/304 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +  ++  +  +       L+ +  + A   LS +D+ L+  IV  T+     ++  
Sbjct: 9   TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   +     +    +  LL +S+ Q+ YLD +  +A+V+ AV  AK     +   K VN
Sbjct: 66  LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124

Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176
           +ILR+ +   +  +       +  +    +P W  ++LE+ +G +R +AI ++    S  
Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
            I +T    +E  A  L+A         L +      +   F  G   +QD S+ +    
Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244

Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293
                +  +LD C+APGGKT+ +   +   KV ALD+   +LE ++ N +RL +    + 
Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304

Query: 294 IEMD 297
            ++D
Sbjct: 305 RKLD 308


>gi|149202698|ref|ZP_01879670.1| NOL1/NOP2/sun family protein [Roseovarius sp. TM1035]
 gi|149143980|gb|EDM32014.1| NOL1/NOP2/sun family protein [Roseovarius sp. TM1035]
          Length = 383

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 148/453 (32%), Gaps = 83/453 (18%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L  + R        L      + +     +D+  +R  V   LR 
Sbjct: 1   MTPG--ARVAAAIEVLERI-RAGEPAEKALTNWARTARYAG--SKDRAALRDHVFSVLRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                A                    L +   ++  +D             A        
Sbjct: 56  WRSCAAWGGGEDGR-----------ALMLGSLRLQGID-------------ADTVFTGEG 91

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A    + + RVS            +  +P+W  ER           A  +A      I 
Sbjct: 92  HAPAPLTEVERVSAVPDAT-----AVRDLPDWLWERF-EASLGANAEAAVEALRVRAPIM 145

Query: 180 LTVKFDIETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           L V     T A               V +    +++ +    I +   +AEG   +QD S
Sbjct: 146 LRVNARRATRAAAQARLASEGIVAQPVEIARHALQVIDGERKITTSQCYAEGWVELQDGS 205

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   ++     +   VLD CA  GGK             A D + +R+  L     R  +
Sbjct: 206 SQAAMEALDLPDGARVLDYCAGGGGKVLALAARVTGAFFAHDAAPQRMRDLPVRAARAGV 265

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               + +       P+  FD VL DAPCS +GT RR P+  W    + + +    Q  +L
Sbjct: 266 DVGLLTQ-------PEGEFDLVLCDAPCSGSGTWRRTPEAKWALTPERLEELTRLQLGIL 318

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    V P G +V++ CS+ K+++++V+ +    +P                       
Sbjct: 319 SEAAPLVAPAGRLVYATCSVLKEENQDVIARFASENPEWTVR------------------ 360

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +++  P        +S   DGFF   L R+
Sbjct: 361 ---YMQHWP--------ISETGDGFFLSQLERV 382


>gi|157161302|ref|YP_001458620.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli HS]
 gi|170019820|ref|YP_001724774.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli ATCC
           8739]
 gi|157066982|gb|ABV06237.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli HS]
 gi|169754748|gb|ACA77447.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli ATCC 8739]
          Length = 481

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 Y--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGVAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +  +     AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCMWLKETYPDAVEFLPLGELFPAA---NKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|266623221|ref|ZP_06116156.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479]
 gi|288865004|gb|EFC97302.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479]
          Length = 474

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 19/253 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  +     P    G++++Q+ SA   V+L        VLDLCAAPGGKT 
Sbjct: 59  PWAREGYYYDSSDRPGKHPYHEAGLYYIQEPSAMAVVELLDPKPGDCVLDLCAAPGGKTT 118

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           Q+    +    + + ++   R + L  N++R+ +    +          +    FD ++V
Sbjct: 119 QIAGRLMGEGFLLSNEIHPARAKILSQNVERMGIRNAVVANETPERLAERFPEFFDGMVV 178

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+  +       D +V  A  QR++L      +K GG +V+S C+   ++
Sbjct: 179 DAPCSGEGMFRKDEEACRQWSPDHVVMCAARQRQILDSAARMLKAGGRMVYSTCTFSPEE 238

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-----LSPEGWIRITPDMLEKIDGVS 427
            E+ ++  L   P   E+  +      S            +  G  RI P + E      
Sbjct: 239 DEQTIEMFLSEHP-EFEIEDMGVREGLSPGKPEWGISAAETLRGTYRIWPHLSEGE---- 293

Query: 428 SGMDGFFAVALRR 440
               G +   LR+
Sbjct: 294 ----GHYLAVLRK 302


>gi|312127718|ref|YP_003992592.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777737|gb|ADQ07223.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 455

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 19/307 (6%)

Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200
             +PE F  +++       ++ + + D      +   T K  +E +  K+      +   
Sbjct: 1   MNLPEEFLSKMKEILNDEFDQFIKVYDFDSYKGFRVNTAKVSVEEFIEKMGIEFEKVPWC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                      +   P +  G+ ++Q+ SA  PV+         VLDLCAAPGGK+ Q  
Sbjct: 61  KDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315
             +     + + DV   R++ L  N++ L L    I+     +        FD +LVDAP
Sbjct: 121 ARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P       ++   K    QR ++ +    +K GG +V+S C+ + +++E 
Sbjct: 181 CSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEVEENEG 240

Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           ++   L+      V  +     +   I++    + +  +RI P  +           G F
Sbjct: 241 IIDWFLKKHKNYEVIEIKKYEGFSDGIEINGNKNLKKAVRIYPHRVRGE--------GHF 292

Query: 435 AVALRRL 441
              L+++
Sbjct: 293 ICKLKKV 299


>gi|312622543|ref|YP_004024156.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203010|gb|ADQ46337.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 455

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 19/306 (6%)

Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200
             +PE F  +++       ++ + I D      +   T K  +E +  K+      +   
Sbjct: 1   MNLPEEFLSKMKEILNDEFDQFIKIYDFDSYKGFRVNTAKVSVEEFIDKIGIEFERIPWC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                      +   P +  G+ ++Q+ SA  PV+         VLDLCAAPGGK+ Q  
Sbjct: 61  KDGFYYTEELRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315
             +     + + DV   R++ L  N++ L L    I+     +        FD +LVDAP
Sbjct: 121 ARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P       ++   K    QR ++ +    +K GG +V+S C+ + +++E 
Sbjct: 181 CSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEVEENEG 240

Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           ++   L+      V  +     +   I++    + +  +RI P  +           G F
Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAVRIYPHRVRGE--------GHF 292

Query: 435 AVALRR 440
              LR+
Sbjct: 293 ICKLRK 298


>gi|218887132|ref|YP_002436453.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758086|gb|ACL08985.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 530

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 142/411 (34%), Gaps = 68/411 (16%)

Query: 37  AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96
               +S++D  L   +V   LR   RI  +L   L +   +        L V+  +I++L
Sbjct: 85  RHAGISRQDAALATELVYGYLRSEIRISWLLRRFLTAP-EKLPQEALLTLGVAAHEIVHL 143

Query: 97  D-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE----- 150
           D + DYA VD AV   ++        KL N++LR V+R   +        + +PE     
Sbjct: 144 DRIPDYAAVDWAVTHIRQRFGP-GLGKLANAVLRNVARLGDDARNAEMYHADLPEPRDFL 202

Query: 151 --------WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
                   W  +   + YG  R   +  A        + V      W    + ++   GG
Sbjct: 203 SVHHAAPRWLVDLWCDAYGPGRAADLLAASAQAPAPAVRVNAARSGWQALRDQLIADHGG 262

Query: 203 IRLKELPE--SIVSLPG-----FAEGVWWVQDASASIPVQLFGTLNNLSV-LDLCAAPGG 254
                      +   P         G+   Q A++   +             D C   GG
Sbjct: 263 TACGHAGVVFPVGGFPAEVAALERAGLLSRQGAASQEVLDALLPDTWEGPVWDACCGRGG 322

Query: 255 KTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------- 304
           K   L+  G  V    D +  RL  LR + +RL L    I+   A               
Sbjct: 323 KALALLERGVDVRLCSDPNAGRLRGLRADAERLGLTVPAIVRASATQPPCATDSPSAAGG 382

Query: 305 ----------------------------------KLFDAVLVDAPCSSTGTIRRHPDVLW 330
                                                  +L+DAPCS  GT+ R PD+  
Sbjct: 383 PAGPALPVQPVQPVTPDTSGTPHTPGTNDGTTSSCALRTILIDAPCSGLGTLSRRPDIKL 442

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R   D+   A  Q ++L   +S +  GG +V+  C+L+  ++E  V+++L
Sbjct: 443 RRSPADLDALAALQGRILDAALSVLPTGGRLVYITCTLNPAENEAQVERLL 493


>gi|160933800|ref|ZP_02081188.1| hypothetical protein CLOLEP_02661 [Clostridium leptum DSM 753]
 gi|156867677|gb|EDO61049.1| hypothetical protein CLOLEP_02661 [Clostridium leptum DSM 753]
          Length = 526

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 21/254 (8%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +L+     +    +    + + S P    G ++VQ+ SA+  V +        VLDLCAA
Sbjct: 130 RLSPAPFCSESYYIDPAAQGVGSHPLHHAGAYYVQEPSAAGAVTVLDPKPGDRVLDLCAA 189

Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306
           PGGK+ Q+         + + +  K R   L  N++R+ L    +     +         
Sbjct: 190 PGGKSTQIGTALRGKGLLWSNEFVKSRTGSLLSNVERMGLRNCVVSSCYPETLCKRLAGW 249

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VLVDAPCS  G  RR+PD +     +     A  Q  +L      VKPGG++V+S C
Sbjct: 250 FDKVLVDAPCSGEGMFRRNPDAVKEWSLNHTKACAQRQEAILQTASGAVKPGGVLVYSTC 309

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +    ++E VV+  L+ +    EL+    ++ +   +  A       RI P         
Sbjct: 310 TFSPLENEGVVETFLKRN-RDFELIDCGVSFGRPSGLPEA------RRIFP--------- 353

Query: 427 SSGMDGFFAVALRR 440
             G +G F   LR+
Sbjct: 354 MDGGEGHFIAKLRK 367


>gi|260433751|ref|ZP_05787722.1| NOL1/NOP2/sun family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417579|gb|EEX10838.1| NOL1/NOP2/sun family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 387

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 138/452 (30%), Gaps = 77/452 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  ++         L      S F     +D+  +R  V   +R 
Sbjct: 1   MTP--AARVQAAIEILDEIL-SGTPAEKALTGWARRSRFAG--SKDRAAIRDHVFDAVRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           +    A    +               L +                    EQ      +  
Sbjct: 56  MRSYAARGGAMTGRG-----------LMLGA----------LRATGEDPEQVFTGDRHAP 94

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178
                + + R  +          A    IPEW     E   G++   A +        ++
Sbjct: 95  APVQDHEVGRAFATV--------AEAHDIPEWLWPIFERSLGEDATAAAAALQKRAPVHL 146

Query: 179 DLT-----VKFDIETWAHKLNAVMLPTGGIR---LKELPESIVSLPGFAEGVWWVQDASA 230
            +      V   ++    +   V           + +    + +   + +G+  +QDA++
Sbjct: 147 RVNLAKTDVTGAVDALWREGIGVRSHPACQTALEVIQGTRKVSASKAYKDGLVELQDAAS 206

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289
              V        + VLD CA  GGK   L  +      A DV+  R+  L     R    
Sbjct: 207 QAVVAELDLQPGMRVLDYCAGGGGKALALAAAKGVQVFAHDVNPARMRDLPVRAQRAG-- 264

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              I  +   +      FD VL DAPCS +G  RR P   W    D + +    Q ++L 
Sbjct: 265 -VSITILGPHEVSTSGPFDVVLTDAPCSGSGAWRRAPAGKWALSPDRLDQLPRLQLEILH 323

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           Q  + V   G + ++ CS+   +++ VV   L+                           
Sbjct: 324 QASNLVAQTGTLAYATCSVLDVENDRVVDAFLQECAE----------------------- 360

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    +      V+ G DGF++  L R+
Sbjct: 361 ------WRQVFRNAWQVAHGTDGFYSAHLTRM 386


>gi|312969872|ref|ZP_07784055.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           1827-70]
 gi|257096804|sp|A8A133|RSMF_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|257096805|sp|B1J0Q3|RSMF_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|310338157|gb|EFQ03246.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           1827-70]
          Length = 479

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 Y--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGVAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +  +     AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCMWLKETYPDAVEFLPLGELFPAA---NKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|218705334|ref|YP_002412853.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           UMN026]
 gi|293405330|ref|ZP_06649322.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           FVEC1412]
 gi|298380972|ref|ZP_06990571.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           FVEC1302]
 gi|331663326|ref|ZP_08364236.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli TA143]
 gi|226725338|sp|B7NBI3|RSMF_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|218432431|emb|CAR13323.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
           UMN026]
 gi|291427538|gb|EFF00565.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           FVEC1412]
 gi|298278414|gb|EFI19928.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           FVEC1302]
 gi|331059125|gb|EGI31102.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA
           m5C1407methyltransferase) [Escherichia coli TA143]
          Length = 479

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 21/264 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241
            ++   L  +     G  ++   E    + S      G++++Q+AS+ +PV         
Sbjct: 58  ASYGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 117

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 118 PQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDG 177

Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      + 
Sbjct: 178 RVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALC 237

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + 
Sbjct: 238 PGGTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVF 294

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P + +          GFF   LR+
Sbjct: 295 PQIYDCE--------GFFVARLRK 310


>gi|320159374|ref|YP_004191752.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus MO6-24/O]
 gi|319934686|gb|ADV89549.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus MO6-24/O]
          Length = 404

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 141/441 (31%), Gaps = 64/441 (14%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V+ +   L       + +     L   +Q  +  +    LR L     + D    +
Sbjct: 17  ILDLVLNEGSPLDRAYSRHFSE---LNLISAEQARITMVTGDVLRRLNLYCFLADIDASN 73

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                    ++ +R+         +  +      +   K +        L  + +     
Sbjct: 74  -------ISRESMRL---------IHIWHKFH-GLALPKTNYAEAIEDDLFQAKMEEAKA 116

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
           +          + ++ E     L                   L     +K D +  A +L
Sbjct: 117 QPALWDGCPEWLDVLGERELGELWAAERSALAKPAKRYLRVNL-----LKCDRDDLAKRL 171

Query: 194 NAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
           N   + T                ++     FA+G +  QDA +            + V+D
Sbjct: 172 NKEGVSTVPVDGVESALEVTSNSALFKTQSFADGWFEQQDAGSQKVAAALDVKPGMRVID 231

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYC 302
            CA  GGKT     ++    ++ A+DV + +L  L+    R   +  +            
Sbjct: 232 ACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAGAHNVETRLITSSKTIKR 291

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            K   D VL+D PCS  G ++R+PD  W    + +      Q  +L      VK GG++V
Sbjct: 292 LKLSADRVLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILASYSRMVKVGGMLV 351

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS+   ++   V   L ++P    +   N                            
Sbjct: 352 YATCSIMPCENRGQVDAFLAANPHFRLIDDEN---------------------------- 383

Query: 423 IDGVSSGMDGFFAVALRRLIQ 443
           I   +SG DGF+   L R+ +
Sbjct: 384 ITPANSGFDGFYLARLERIAE 404


>gi|319938161|ref|ZP_08012559.1| RNA methylase [Coprobacillus sp. 29_1]
 gi|319806682|gb|EFW03331.1| RNA methylase [Coprobacillus sp. 29_1]
          Length = 440

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 24/294 (8%)

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPES 211
                K        A   P      +    +     LN   +                  
Sbjct: 9   MQDILKNEYPDFMKALEQPAVKAFYLNPHKKEAIKYLNKEFIQPHVVVKDGYYFNYEKYP 68

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTA 268
           +   P F+ G++++Q+ SA +         +  +LD+CAAPGGKT      +     + A
Sbjct: 69  LGKSPFFSCGLYYIQEPSAMLVTHFLNIQKDDYILDMCAAPGGKTCAAASQLSEDGLMIA 128

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326
            D+   R + L  N++R  L    +   D   +  +    FD +++DAPCS  G  R+  
Sbjct: 129 NDIVPLRAKILSENVERFGLKNTIVTNCDPLVFENQLKGFFDKIILDAPCSGEGMFRKSD 188

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             + T   + + + A  QR+LL   ++ +KP G +++S C+ +  ++EE +Q +L     
Sbjct: 189 AAIETWSLEKVHECAHIQRQLLDAAMNLLKPEGQLIYSTCTYNTIENEEQIQYLLNHYNC 248

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              L+PL     KS  M+  ++ E  +R+ P   +          G F   +++
Sbjct: 249 --SLIPLK----KSHGMSPGMNMEEAVRLYPHHYQGE--------GHFIALIQK 288


>gi|330828844|ref|YP_004391796.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas veronii B565]
 gi|328803980|gb|AEB49179.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas veronii B565]
          Length = 403

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 149/421 (35%), Gaps = 56/421 (13%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFV---LISSLPRKKYSLQ---QLLR-VSVA------QIL 94
           LV AIV+  L     +D         +      +         LLR +S+       Q+ 
Sbjct: 13  LVVAIVDDVLGQGLTLDRAYARHFSGIELKPQEQARIALVTGDLLRRLSLYCFLTGIQVR 72

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
             +   + ++       K  + N       N    R    + +    +  +   P W ++
Sbjct: 73  QAEKNVWPLLHSWHAFHKIAQPNNPTLDRFNEEAFRRRLTEAKKNPVL--MDGCPSWLEK 130

Query: 155 RLENFYGKER-VLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT------GGIRLK 206
                 G+       + A +   Y+ +  +K   +     L    + T            
Sbjct: 131 LGSEQLGEAWPAERAALAWMPKRYLRVNTLKCTRDELQAMLAKEQVTTIPVEAVETALQV 190

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263
               ++     FA+G +  QDA + +          + V+D CA  GGKT     ++   
Sbjct: 191 TSDAALFRTKAFADGCFEQQDAGSQLVAAALEVAPGMRVIDACAGAGGKTLHIAAMMQGK 250

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
            ++ A+DV + +LE L+    R   +     +I         K+  D VL+D PCS  G 
Sbjct: 251 GRLLAMDVEEWKLENLKQRARRAGAHNVETRVITSSKTVKRLKESADRVLLDVPCSGLGV 310

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           ++R+PD  W    + +      Q ++L +    VK GG++V++ CS+  +++ + V K L
Sbjct: 311 LKRNPDAKWRDTAERLPVLVALQEEILQRYSQMVKVGGLLVYATCSILPEENRQQVDKFL 370

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++                             R+  D    +    +G DGF+   + R+
Sbjct: 371 AANENF--------------------------RLRDDH--TVSPSETGFDGFYMARIERI 402

Query: 442 I 442
            
Sbjct: 403 A 403


>gi|237731873|ref|ZP_04562354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter sp. 30_2]
 gi|226907412|gb|EEH93330.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter sp. 30_2]
          Length = 473

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTL--NNL 243
           +   L  V     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 56  YNWSLTPVPWCAEGFWIERDDEESVPLGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPE 115

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 116 RVMDVAAAPGSKTTQIAAKMNNRGAILANEFSASRVKVLHANISRCGIANVALTHFDGRV 175

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  ++ A  QR+LL      ++PG
Sbjct: 176 FGAALPESFDAILLDAPCSGEGVVRKDPDALKNWSVESNLEIAATQRELLDSAFHALRPG 235

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++ ++E ++Q ++ + P  VE +PL+  + ++     AL+PEG++ + P 
Sbjct: 236 GTLVYSTCTLNRDENENIMQWLIETYPDAVEFLPLDDLFPQA---ERALTPEGFLHVFPQ 292

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 293 IYDCE--------GFFVARLRKTA 308


>gi|300717051|ref|YP_003741854.1| ribosomal RNA small subunit methyltransferase F [Erwinia billingiae
           Eb661]
 gi|299062887|emb|CAX60007.1| ribosomal RNA small subunit methyltransferase F [Erwinia billingiae
           Eb661]
          Length = 478

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243
           +  +L  +     G  +         + S      G++++Q+AS+ +PV           
Sbjct: 61  YQWQLTPIPWCEEGFWISRDDADTLPLGSTAEHLSGLFYIQEASSMLPVSALFAGCPTPE 120

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +V+D+ AAPG KT Q    + +   + A + S  R++ L  NL R  +    +   D   
Sbjct: 121 TVMDVAAAPGSKTTQIAAKMGNQGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G IR+  D L     +   + A  Q  L+      +KPG
Sbjct: 181 FGAALPEIFDAILLDAPCSGEGVIRKDADALRNWSVESTAEIAATQHDLIDSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +++S C+L++ ++++V+  + +  P  VE+ PLN  +        A++PEG++ + P 
Sbjct: 241 GTLIYSTCTLNRAENQQVIAWLQQQYPGAVEIEPLNELFP---GAEQAVTPEGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR+L
Sbjct: 298 IFDSE--------GFFVARLRKL 312


>gi|257866908|ref|ZP_05646561.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC30]
 gi|257872575|ref|ZP_05652228.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC10]
 gi|257800866|gb|EEV29894.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC30]
 gi|257806739|gb|EEV35561.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC10]
          Length = 455

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 13/226 (5%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I   +        VLDLCAAPGGKT Q    +     + A ++  +
Sbjct: 76  HQAGYVYSQEPSAMIVATIAAAQPGERVLDLCAAPGGKTTQLASQLQGKGLLVANEIFPK 135

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R       +      +      + FD ++VDAPCS  G  R+ P  L   
Sbjct: 136 RAKILSENVERWGFPNVVVTNQAPQELSRHFPQFFDKIVVDAPCSGEGMFRKDPVALEEW 195

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D   + A  Q+ +L Q ++ +KPGG +++S C+   +++E ++  ++   P  +E + 
Sbjct: 196 QADTPDQCAIRQKDILAQAVAMLKPGGQLIYSTCTFAPEENEAMMAWLMEEYPFTIEAID 255

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L++      +   A   E  IR+ P + +          G FA  L
Sbjct: 256 LDNVSHGRSEWGAAPGIEKTIRLWPHLNQGE--------GHFAAKL 293


>gi|293410145|ref|ZP_06653721.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B354]
 gi|291470613|gb|EFF13097.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           B354]
          Length = 479

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEVVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|83944497|ref|ZP_00956950.1| NOL1/NOP2/sun family protein [Sulfitobacter sp. EE-36]
 gi|83844699|gb|EAP82583.1| NOL1/NOP2/sun family protein [Sulfitobacter sp. EE-36]
          Length = 386

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 142/452 (31%), Gaps = 79/452 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L+ +    +     L      S +     +D+  VR  V   LR 
Sbjct: 1   MTPG--ARISAAIEILNTM-ADGVPAEQALTRWARGSRYAG--SKDRAAVRDHVFDVLRQ 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                  L   L      +   +  +LR                    ++ A        
Sbjct: 56  RR-----LAAHLGGGDTGRALMI-GVLRA-----------------QGIDLAPLFNG--- 89

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                   L        +    +A +  +P+W     +   G +   A++ A  S   I 
Sbjct: 90  -QGHAPLPLSDAEATPPDAPSDMATLWNLPDWIIPLFQASLGAD-AEAVAQALQSRAPIS 147

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDAS 229
           + V      +   A  L    + T    L             + +   +  G   +QDA+
Sbjct: 148 VRVNTAQATVADVAEALAEAGIETRTNDLCTTALTVTEGERKLRNSDSYLHGDIELQDAA 207

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   V          +LD CA  GGK  A      A V A D+  RR+  L    DR   
Sbjct: 208 SQAVVAALPEAE--RMLDYCAGGGGKALAMAARRDATVFAHDIDPRRMVDLPARADRAGA 265

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               + ++   +      FD VL DAPCS +G+ RR P+  WT     + +    Q K+L
Sbjct: 266 T---VRQVTTDELDGAGPFDVVLCDAPCSGSGSWRRSPEGKWTFTAGRLEELTQIQDKIL 322

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               +     G + ++ CS+ + ++E+     L  +P                       
Sbjct: 323 DHAATLTAKNGTLAYATCSVLQTENEDRAAAFLVRNPD---------------------- 360

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     +  K   V +  DGFF    +R
Sbjct: 361 -------WTQVFTKRFHVDAQGDGFFTAHFKR 385


>gi|227544261|ref|ZP_03974310.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300910237|ref|ZP_07127697.1| NOL1/NOP2/sun family protein [Lactobacillus reuteri SD2112]
 gi|227185753|gb|EEI65824.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300892885|gb|EFK86245.1| NOL1/NOP2/sun family protein [Lactobacillus reuteri SD2112]
          Length = 455

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 19/234 (8%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G  + Q+ SA    ++        VLDLCAAPGGKT      + +   + A ++  +R +
Sbjct: 76  GWVYSQEPSAMFVGEVVNPQAGERVLDLCAAPGGKTTHLIAKMNNQGLLVANEIFPKRAK 135

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +      D   +    FD +LVDAPCS  G  R+ P  +     +
Sbjct: 136 ILAENLERWGAKNAVVTSESPADLEKQFPQYFDRILVDAPCSGEGMFRKEPAGIEYWSPE 195

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  Q+K+L   +  +KPGG +V+S C+   ++ E+ +  +L   P  ++LVP+  
Sbjct: 196 YSAECANRQQKILASAMKMLKPGGTLVYSTCTFAPEEDEQTISWLLGDYP-ALKLVPIEK 254

Query: 396 AYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           A                    +R+ P  L+          G F   L    +P+
Sbjct: 255 AVGMDDGRPEWADGNEELKKTVRLFPHHLKGE--------GHFIAKLV-NGKPE 299


>gi|82596191|ref|XP_726160.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481450|gb|EAA17725.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 647

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 11/260 (4%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
                   +        I L +   ++ SL  +  G + +Q +S+ IPV       N  V
Sbjct: 273 KNKNIAIQDGPTWNNVDITLTDTSSNVGSLNEYLYGYYIIQSSSSLIPVLELNVKENELV 332

Query: 246 LDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFD 300
           LD+CAAPGGK   +           A D++K R + +  +  R+ +    +   D    +
Sbjct: 333 LDMCAAPGGKCTFICTIQKNKGIVYANDINKLRCKAIEAHAARMGINNLIVTSFDSLKIN 392

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              K  FD +L+DAPCS TG + ++ +    +   +I   A  QRKLL   I  VK GGI
Sbjct: 393 KYFKFKFDKILLDAPCSGTGVVNKNKNAR-RKTIKEIRDLAQKQRKLLNNAIDLVKNGGI 451

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           V++S CS+  +++E+V+  +L+   + +  + +N                        + 
Sbjct: 452 VIYSTCSITVEENEQVINYILKKRDVNLLPIDINIGDPGITHYRKKQFSSKV-----SLC 506

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           ++I       D FF   L +
Sbjct: 507 KRIYLHKHNHDNFFVAKLVK 526


>gi|332558898|ref|ZP_08413220.1| NOL1/NOP2/sun family protein [Rhodobacter sphaeroides WS8N]
 gi|332276610|gb|EGJ21925.1| NOL1/NOP2/sun family protein [Rhodobacter sphaeroides WS8N]
          Length = 387

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 140/447 (31%), Gaps = 69/447 (15%)

Query: 1   MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     ARL  +  +L  ++         L      S F      D+  VR +V   LR 
Sbjct: 1   MTP--AARLSAAIGILDRIL-GGTPAEQALTNWGRASRFAG--SGDRAAVRDLVFDALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI--LYLD---VADYAVVDLAVEQAKRD 114
                          L      +   LR++  ++  L+                 QA  +
Sbjct: 56  RRSFARAGGAETGRGL------VLGGLRMAGQEVGDLFTGEGHAPAPPAGSELKPQAPAE 109

Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
            E       + +   R S          A     P + +  L           ++   I+
Sbjct: 110 LEALDCPDWL-APALRESLGADFAPVMEALRHRAPVFLRVNLARTDRTAAAAELAAEGIA 168

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
                L      ET                + E P  + +   + EG   +QDA++   V
Sbjct: 169 TRPHPL-----AETALE-------------VTENPRRLQASAAYREGRVELQDAASQAVV 210

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDI 293
                     VLD CA  GGK+  +         A D   RR+  L     R  +    +
Sbjct: 211 AALPLAPGDRVLDYCAGGGGKSLAMAARAPIDLSAHDADPRRMRDLPERAARAGVEVRRL 270

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D     P   FD VL D PCS +G+ RR P+  W+   + + +    Q  +L +   
Sbjct: 271 APGDTARRGP---FDLVLADVPCSGSGSWRRAPEGKWSLTPERLAELRAIQSTILDEVAP 327

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            V+PGG + ++ CSL   ++    +  L  +     +                      +
Sbjct: 328 LVRPGGHLAYATCSLLASENAGQTEAFLERTSGWTRV--------------------HQL 367

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           R+TP           G DGFF   L+R
Sbjct: 368 RLTP---------LDGGDGFFLDLLQR 385


>gi|118431884|ref|NP_148630.2| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
 gi|116063207|dbj|BAA81481.2| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
          Length = 451

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/426 (21%), Positives = 158/426 (37%), Gaps = 42/426 (9%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK---KYSLQQLLRVSVAQILYLDV 98
           S+ D++   AI+    R    +D  +   L          +  L+Q LR+S     + + 
Sbjct: 41  SKYDRVF-TAIMYKMFRMQGVLDRAVAHALGVRPEDVIGFEPMLRQALRLSAYLAQFDET 99

Query: 99  ADYAVVDLAVEQ------AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWF 152
            D  ++   +        ++           V   L     +     +      ++P   
Sbjct: 100 RDRRLISALLRHGLPLLASRYGWRKARLVHKVLERLIDEPWKPSTREEEFMARYMVPIDI 159

Query: 153 KERLENFYG-KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
                      + +  + DA   P    + V     ++     A+          +  E 
Sbjct: 160 VIMARRVVAGDDELEKLLDAINRPPVNSVRVNTLKASFDEVYKAIRSSGLYAWPSDRVEG 219

Query: 212 IVSLPG---------FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
           ++   G          AEG    QD S++    L        VLD+CAAPGGKT     L
Sbjct: 220 VIRYRGPFNDTLARLLAEGKIVPQDESSAAAAPLLQPRPGEIVLDMCAAPGGKTTHLAEL 279

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAP 315
               A++   D+   RL +++  ++     A   +        PK       D +L+D P
Sbjct: 280 SRLQARILGFDIYWDRLRRMKTLVEATASEAAVAVVKADAANAPKILGRGSVDKILLDPP 339

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS+TG + ++ D  W      I++    Q+ LL   +  VKPGG+++++ CS+  ++ E+
Sbjct: 340 CSTTGGLHKNVDARWRLTRRKIMELQELQKTLLDAAVETVKPGGLILYTVCSILAEEGED 399

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           VV   L      +E+VPLN  Y +S  +       G +R  P           G+ GFF 
Sbjct: 400 VVLHALEK-WGNLEIVPLNGPYDESPILP------GTMRAWPH--------RHGVTGFFY 444

Query: 436 VALRRL 441
             LR+ 
Sbjct: 445 ALLRKK 450


>gi|292659864|pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
           Thermus Thermophilus In Space Group P21212 In Complex
           With S-Adenosyl-L- Methionine
          Length = 464

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 15/250 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P F  G++++Q+ SA     L        VLDL AAPGGKT 
Sbjct: 58  PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313
                +     + A +V  +R+  L  N++R     A       A        F  VL+D
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+  +           + A  Q+ LL Q    + PGG++V+S C+   +++
Sbjct: 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEEN 237

Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430
           E VV   L++ P   +E   L+  +   +      +PE     R+ P  LE         
Sbjct: 238 EGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 290

Query: 431 DGFFAVALRR 440
            G F    R+
Sbjct: 291 -GHFLARFRK 299


>gi|68067801|ref|XP_675834.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56495242|emb|CAI04459.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 533

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 11/260 (4%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
                   +        I L +   ++ SL  +  G + +Q +S+ IPV       N  V
Sbjct: 238 KNKNIAIQDGSNWNNVDITLTDTSSNVGSLNEYLYGYYIIQSSSSLIPVLELNIKENELV 297

Query: 246 LDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFD 300
           LD+CAAPGGK   +           A D++K R + +  +  R+ +    I   D    +
Sbjct: 298 LDMCAAPGGKCTFICTIQKNKGIVYANDINKLRCKAIEAHAARMGINNLIITSFDSLKIN 357

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              K  FD +L+DAPCS TG + ++ +    +   +I   +  QRKLL   I  VK GGI
Sbjct: 358 KYFKFKFDKILLDAPCSGTGVVNKNKNAR-RKTIKEIRDLSQKQRKLLNNAIDMVKNGGI 416

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           V++S CS+  +++E+V+  +L+   + +  + +N      I                 + 
Sbjct: 417 VIYSTCSITVEENEQVINYILKKRDVNLLPIDINIGDPGIIHYRKKQFSSKI-----SLC 471

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           ++I       D FF   L +
Sbjct: 472 KRIYLHKHNHDNFFVAKLVK 491


>gi|254478823|ref|ZP_05092189.1| NOL1/NOP2/sun family putative RNA methylase protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035230|gb|EEB75938.1| NOL1/NOP2/sun family putative RNA methylase protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 460

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 16/251 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    E  E   +      G++++Q+ +A   V++        +LD+ AAPGGKT 
Sbjct: 60  PWCPTGFYYEKEEKAGNHLYHVLGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
                I     + A ++ ++R+  L  N+ R+ +    ++    +      +  FD ++V
Sbjct: 120 HIASKIGDEGLIVANEIDRKRIRALEENVARMGIRNIVLLNERPERLIQAFEGYFDKIVV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        ++++  +  QR +L      +K GG++V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDPAARRIWSLNNVLSCSITQRNILRSVAPLLKRGGVLVYSTCTFSPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSG 429
           +E V++K L  +P    +    S ++          P   E  +R+ P  +         
Sbjct: 240 NEGVIKKFLEENPEFEVVESELSHFFDKGHPEWVDGPKELEKCMRLWPHKVRGE------ 293

Query: 430 MDGFFAVALRR 440
             G F   L++
Sbjct: 294 --GHFIAKLKK 302


>gi|20808537|ref|NP_623708.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517161|gb|AAM25312.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 460

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 16/251 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    E  E   +      G++++Q+ +A   V++        +LD+ AAPGGKT 
Sbjct: 60  PWCPTGFYYEKEEKAGNHLYHVLGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
                I     + A ++ ++R+  L  N+ R+ +    ++    +      +  FD ++V
Sbjct: 120 HIASKIGDEGLIVANEIDRKRIRALEENVARMGIRNIVLLNERPERLIQAFEGYFDKIVV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        ++++  +  QR +L      +K GG++V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDPAARRIWSLNNVLSCSITQRNILRSVAPLLKRGGVLVYSTCTFSPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSG 429
           +E V++K L  +P    +    S ++          P   E  +R+ P  +         
Sbjct: 240 NEGVIKKFLEENPEFEVVESELSHFFDKGHPEWVDGPKELEKCMRLWPHKVRGE------ 293

Query: 430 MDGFFAVALRR 440
             G F   L++
Sbjct: 294 --GHFIAKLKK 302


>gi|325518100|gb|EGC97891.1| 16S rRNA methyltransferase B [Burkholderia sp. TJI49]
          Length = 362

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 143/357 (40%), Gaps = 27/357 (7%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKE 154
             + VVD AV      +E      +VN++LRR  RE+  L                W+ +
Sbjct: 17  PPFTVVDQAVTAIGARRECAFAKGMVNAVLRRFLRERDALVAALQADPVARWNYRAWWID 76

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKE 207
            ++  +       ++        + L V     T    L+                    
Sbjct: 77  AVKRAWPDAWQAILAAGDRQGP-LTLRVNARRSTVDAYLDTLRANGIEAAAIGRHAVRLA 135

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKV 266
               +  +PGFA+GV  VQDA A +  +  G  + + VLD CAAPGGKT  L+  +  +V
Sbjct: 136 SALPVERIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHLLELADVEV 195

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIR 323
            AL+    R  ++  NL RL L A D+   D      +   + FD +L D PCS++G +R
Sbjct: 196 VALESDATRATRIGENLARLSL-AADVRVGDAGSPDAWHDGRPFDRILADVPCSASGIVR 254

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           RHPD+ W R   DI      QR++L      VKPGG +++  CS+  ++ E   +    +
Sbjct: 255 RHPDIRWLRREADIAALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAA 314

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               V L        +++             +           ++  DGFF    ++
Sbjct: 315 CEDAVRLDAPGQLLPRAVPDG----------VRGGAAVGALDQNTDHDGFFYARFQK 361


>gi|292659860|pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
           Thermus Thermophilus In Space Group 43
 gi|292659861|pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
           Thermus Thermophilus In Space Group 43
 gi|292659862|pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
           Thermus Thermophilus In Space Group P2 In Complex With
           S-Adenosyl-L- Methionine
 gi|292659863|pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
           Thermus Thermophilus In Space Group P2 In Complex With
           S-Adenosyl-L- Methionine
          Length = 464

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 15/250 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P F  G++++Q+ SA     L        VLDL AAPGGKT 
Sbjct: 58  PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313
                +     + A +V  +R+  L  N++R     A       A        F  VL+D
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+  +           + A  Q+ LL Q    + PGG++V+S C+   +++
Sbjct: 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEEN 237

Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430
           E VV   L++ P   +E   L+  +   +      +PE     R+ P  LE         
Sbjct: 238 EGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 290

Query: 431 DGFFAVALRR 440
            G F    R+
Sbjct: 291 -GHFLARFRK 299


>gi|110679930|ref|YP_682937.1| NOL1/NOP2/sun family protein, putative [Roseobacter denitrificans
           OCh 114]
 gi|109456046|gb|ABG32251.1| NOL1/NOP2/sun family protein, putative [Roseobacter denitrificans
           OCh 114]
          Length = 386

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 133/435 (30%), Gaps = 75/435 (17%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
            V+ +  +    L      S F     +D+  VR  V   LR    + A+          
Sbjct: 15  DVIAQGAAAEQALTRWARLSRFAG--SKDRAAVRDHVFDVLRLRDTVAALGGGASGR--- 69

Query: 77  RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
                    L + +  + Y  +   A  +                    + L        
Sbjct: 70  --------ALMLGL--LRYNGLDPSAFFN--------------GQGYAPAALSAQELAYS 105

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-- 194
                  G+  +P+W           E   AI+ A      + L V          ++  
Sbjct: 106 ADRDTACGLWNLPDWLVPEF-ERSLGEEAGAIAQALTQRGPVTLRVNLKRADVTTAMHSL 164

Query: 195 --------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                   A  +    + + E    + +   F  G   VQDA++   V           L
Sbjct: 165 ATDGVVTTANPVCATALTVTEGARRVRNATAFLSGQVEVQDAASQAVVDDLPEAQ--RCL 222

Query: 247 DLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           D CA  GGK  A     G +V A D    R+  +     R       I ++         
Sbjct: 223 DYCAGGGGKALAMAAQDGRRVFAHDRDPDRMRDIAPRAKRAGA---VIKQLATDRLHAHG 279

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD VL DAPCS +G  RR P+  W   +  + +    Q+ +L +    V   G +V++ 
Sbjct: 280 PFDLVLCDAPCSGSGAWRRSPEAKWRFTSARLQELQAMQQDILREAAPLVDAQGWLVYAT 339

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+ + ++E+ +   L  +P                                  L++   
Sbjct: 340 CSVLRAENEDQITAFLSQNPD-----------------------------WRCTLQRRWP 370

Query: 426 VSSGMDGFFAVALRR 440
           +S   DGF+   L R
Sbjct: 371 LSENCDGFYTAHLTR 385


>gi|55981356|ref|YP_144653.1| rRNA methylase [Thermus thermophilus HB8]
 gi|55772769|dbj|BAD71210.1| probable rRNA methylase [Thermus thermophilus HB8]
          Length = 456

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 15/250 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P F  G++++Q+ SA     L        VLDL AAPGGKT 
Sbjct: 58  PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313
                +     + A +V  +R+  L  N++R     A       A        F  VL+D
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+  +           + A  Q+ LL Q    + PGG++V+S C+   +++
Sbjct: 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEEN 237

Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430
           E VV   L++ P   +E   L+  +   +      +PE     R+ P  LE         
Sbjct: 238 EGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 290

Query: 431 DGFFAVALRR 440
            G F    R+
Sbjct: 291 -GHFLARFRK 299


>gi|256847337|ref|ZP_05552783.1| fmu domain-containing protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716001|gb|EEU30976.1| fmu domain-containing protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 461

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 18/227 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G  + Q+ SA    ++        VLDLCAAPGGK+      +     + A ++ K+R +
Sbjct: 76  GWVYSQEPSAMYVGEVVDPQPGERVLDLCAAPGGKSTHLIAKMHDQGLLVANEIFKKRAQ 135

Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       ++    D+ +      FD +LVDAPCS  G  R+ P  +   + D
Sbjct: 136 ILASNLERWGTKNTVVLNERPDSLEQHFPAFFDRILVDAPCSGEGMFRKEPAGITYWNPD 195

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  QRK+L   +  +K GG +V+S C+   ++ E+ +  +L+  P  +E+V +  
Sbjct: 196 YPAECANRQRKILQSALKMLKAGGTLVYSTCTFAPEEDEQNIAWLLKEYPG-LEMVDIRK 254

Query: 396 AYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                                +R+ P              G F   L
Sbjct: 255 FPGMDNGRPDWADGNPELAKAVRLFPHHYRGE--------GHFIAKL 293


>gi|197248818|ref|YP_002146175.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|226725341|sp|B5F3P3|RSMF_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|197212521|gb|ACH49918.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 479

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++EEV   +  +    VE +PL+  +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLDDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKI 311


>gi|332663955|ref|YP_004446743.1| Fmu (Sun) domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332332769|gb|AEE49870.1| Fmu (Sun) domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 401

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 134/434 (30%), Gaps = 69/434 (15%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
            V++        ++ +        + ++    V   V   +R+   + AV      +   
Sbjct: 22  QVLQDNRFADHAIERQLKAHPHWSIEEQ--GFVAEQVYALVRYYRMLCAVAG---KTPAS 76

Query: 77  RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
              +       +    +L                 K       F  L  + +        
Sbjct: 77  MLDWEDL----LGAWLML-----------------KNHPLGAQFKFLTRNEINN---AYH 112

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196
            + +  A    IP+W  + L      E+      A      + L V       A     +
Sbjct: 113 TIYKVRAVRESIPDWL-DELGFQELGEQWEPTLKALNESPSLVLRVNRLKTDVATLQQQL 171

Query: 197 MLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
                          + E    +     F  G + VQD S+            + V+D C
Sbjct: 172 QQTDIIGKAIAEDTLVIEQRGKLYHTAAFRHGWFEVQDYSSQQVAPFLEVEPGMRVIDAC 231

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPK 304
           A  GGK   L   + +  ++ ALD   ++LE+LR    R  +   +    E         
Sbjct: 232 AGNGGKALHLASLMQNKGRIIALDTDDKKLEQLRVRARRAGVSIIETRLIESTKTIKRLA 291

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
           +  D +L+D PCS  G +RR+PD  W    + + +    Q++LL       +P G +V++
Sbjct: 292 QSADRLLLDVPCSGLGVLRRNPDTRWRLSPEHLQELIALQKQLLSSYAKMCRPDGKMVYA 351

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CS+   +++  +   +                     +      E    I P       
Sbjct: 352 TCSILPSENQLQIDAYIN-------------------GVGSNYKVEASKHIFPQ------ 386

Query: 425 GVSSGMDGFFAVAL 438
              +G DGF+   L
Sbjct: 387 --EAGFDGFYMARL 398


>gi|195333786|ref|XP_002033567.1| GM21395 [Drosophila sechellia]
 gi|194125537|gb|EDW47580.1| GM21395 [Drosophila sechellia]
          Length = 865

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 28/313 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  E+  E+L +      ++   +A      + +            A  L    + 
Sbjct: 319 CLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVN 378

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                + + P +  G + +Q AS+ +PV       N  +LD+C+A
Sbjct: 379 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 438

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307
           PGGK + +   + +   + A D ++ R++ +  N  RL +    +   D   +      F
Sbjct: 439 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 498

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363
           D VL+DAPC+ TG + + P V  T+   D+ +    QRKLLL  I         GG +V+
Sbjct: 499 DRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVY 558

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421
           S CS+  +++E V+   L+     V+LVP    +          +     R  P  ++ +
Sbjct: 559 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 611

Query: 422 KIDGVSSGMDGFF 434
           +    +  MDGF+
Sbjct: 612 RYYPHTHNMDGFY 624


>gi|41615318|ref|NP_963816.1| hypothetical protein NEQ536 [Nanoarchaeum equitans Kin4-M]
 gi|40069042|gb|AAR39377.1| NEQ536 [Nanoarchaeum equitans Kin4-M]
          Length = 332

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 17/266 (6%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            +E    ++  +     G  ++   ESI +   F  G  + Q+A++ IP        NL 
Sbjct: 74  SLEEEGWEIEPIPFYKYGFWVRHESESIGNTWQFQMGYIYSQEAASMIPPLALDLEENLL 133

Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           +LD+ AAPG KT        + + + A D+S  R+  L  N+ R        ++      
Sbjct: 134 ILDMAAAPGSKTTQIAMHTQNNSYIIANDISLDRISALAENVQRTGSLVTITMQDGRNFK 193

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             K  FD +L+DAPCS  G +R+    L   + + I + +  QR+L+      +KP GI+
Sbjct: 194 KYKNTFDRILLDAPCSGVGALRKSYKTLQMWNPNMIERLSKLQRQLIQAAFEALKPNGIL 253

Query: 362 VFSNCSLDKQDSEEVVQKVLRSS------PIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           V+S C+L+  ++E VV  +L         PI +E +  +    +  +       +  +RI
Sbjct: 254 VYSTCTLEPLENEFVVNWLLERYENAKIEPIRIENLKSSEPILEWENYKFFDDIKYTLRI 313

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P          +  +GF+   +R+L
Sbjct: 314 YP--------WDNDTEGFYIAKIRKL 331


>gi|239827028|ref|YP_002949652.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. WCH70]
 gi|239807321|gb|ACS24386.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. WCH70]
          Length = 454

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 124/310 (40%), Gaps = 24/310 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVM---LPT 200
             +P  F E++E     E     S              +K D ET+   +   +      
Sbjct: 1   MKLPSEFIEKMERLLEDEASRFFSTYHEEKANGLRFNPLKIDRETFLTLVPFALSPVPFC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 +  E     P  A G++++Q+ SA    ++        VLDLCAAPGGKT Q  
Sbjct: 61  PTGFYYDAHEQPGKHPYHAAGLYYIQEPSAMFVAEVLKPNPGEFVLDLCAAPGGKTTQLA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
            ++ +   + A ++  +R++ L  N++R  +    +               FD +LVDAP
Sbjct: 121 AMMKNQGLIIANEIHPKRVKALSENIERFGITNALVTNETPEKLAKYFPGFFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+  + +       + + A  QR +L      +K GGI+V+S C+   +++E+
Sbjct: 181 CSGEGMFRKDEEAVQFWSQAHVEQCAIKQRHILDCAYEMLKEGGILVYSTCTFSPEENEQ 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSGM 430
            ++  L++    +EL+ +   +          +      E   R+ P  L+         
Sbjct: 241 TIEAFLQTY-DDLELLSIEKVHGIQPGRREWTNTNFEEMERTARLWPHSLKGE------- 292

Query: 431 DGFFAVALRR 440
            G F   +++
Sbjct: 293 -GHFVAKIKK 301


>gi|257096810|sp|A9MNH4|RSMF_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 479

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWLLTPIPWCDEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  NL R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNHGAILANEFSASRVKILHANLCRCGVANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLESAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PLN  +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYTDAVEFLPLNDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKI 311


>gi|326204453|ref|ZP_08194311.1| RNA methylase, NOL1/NOP2/sun family [Clostridium papyrosolvens DSM
           2782]
 gi|325985485|gb|EGD46323.1| RNA methylase, NOL1/NOP2/sun family [Clostridium papyrosolvens DSM
           2782]
          Length = 470

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 17/253 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
             T      +  ++    P +  G++++Q+ SA +P  + G      VLDLCAAPGGKT 
Sbjct: 58  PWTKDGFYYQEGDNPGRHPYYYAGLYYIQEPSAMLPGAVIGVKPGDKVLDLCAAPGGKTV 117

Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
           Q+   +     + A D++  R++ L  N++   +    ++    +      +  FD ++V
Sbjct: 118 QMATQMQGQGLLVANDINSERVKALVKNVELAGVRNAIVLNETPNKLAVNFENYFDKIMV 177

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+  D + + +     K    Q  +L +  + +KPGGI+++S C+   ++
Sbjct: 178 DAPCSGEGMFRKDEDAIKSWEKYKCEKCCTMQWDILQKVDTMLKPGGIILYSTCTFSPEE 237

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSS 428
            E ++++ +       ELV +  A                     R+ P  L        
Sbjct: 238 DELMIERFMDEHKGNYELVEIPKAGGIEGGRTHWSKGGYDFGKAARLWPHRL-------- 289

Query: 429 GMDGFFAVALRRL 441
             +G FA  LR+ 
Sbjct: 290 NGEGHFAALLRKK 302


>gi|302767744|ref|XP_002967292.1| hypothetical protein SELMODRAFT_86634 [Selaginella moellendorffii]
 gi|300165283|gb|EFJ31891.1| hypothetical protein SELMODRAFT_86634 [Selaginella moellendorffii]
          Length = 505

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 125/319 (39%), Gaps = 35/319 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
           A      E+  E     +     +   +A  +P  + L     ++T    L  V++  G 
Sbjct: 187 ASYYGYNEFLAEYFMQMFPVAEAVEFLEANETPRPVSLRTNT-LKTRRRDLAGVLINRGV 245

Query: 203 I------------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                         + +    + + P +  G + +Q AS+ +PV          ++D+ A
Sbjct: 246 NLDPIGKWSKVGLVVYDSQVPVGATPEYMAGHYMLQSASSFLPVMALAPQEKERIVDVAA 305

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---K 304
           APGGKT  +   + +   + A ++  +RL+ L  N+ R+ +    +   D  +      +
Sbjct: 306 APGGKTTYIAALMKNTGLIYANELKVQRLKSLTANIYRMGVTNSVVCNYDGRELPKVLGR 365

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGI 360
              D VL+DAPCS TG + +   V  T+  +DI + A  Q++L+L  I  V      GG 
Sbjct: 366 NSVDRVLLDAPCSGTGIVGKDQSVKLTKSLEDIQRCAFLQKELILAAIDLVDANSSSGGY 425

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM- 419
           +V+S CS+    +E VV   L+   + V    L       I            R  P + 
Sbjct: 426 LVYSTCSVT---NEAVVDYALKKRHVKVVPTGLEFGKEGFIRFREK-------RFHPSLA 475

Query: 420 -LEKIDGVSSGMDGFFAVA 437
              +       MDGFF   
Sbjct: 476 NTRRFYPHVHNMDGFFVAK 494


>gi|161503027|ref|YP_001570139.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864374|gb|ABX20997.1| hypothetical protein SARI_01091 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 513

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWLLTPIPWCDEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  NL R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNHGAILANEFSASRVKILHANLCRCGVANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLESAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PLN  +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYTDAVEFLPLNDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKI 345


>gi|297565757|ref|YP_003684729.1| RNA methylase, NOL1/NOP2/sun family [Meiothermus silvanus DSM 9946]
 gi|296850206|gb|ADH63221.1| RNA methylase, NOL1/NOP2/sun family [Meiothermus silvanus DSM 9946]
          Length = 457

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 15/250 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P F  G++++Q+ SA     L        VLDL AAPGGKT 
Sbjct: 63  PWCAEGFYYPPDARPGPHPFFYAGLYYIQEPSAQAVGVLADPRPGERVLDLAAAPGGKTT 122

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313
                +     + A +V  +R   L  N++R     A     ++         FD V++D
Sbjct: 123 HLAARMGGQGLLIANEVDSKRTRGLLENVERWGARLAVVGAPVERLAEVWGAYFDRVVLD 182

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+ P+ +         +SA  QR L+      V+PGG++V+S C+   +++
Sbjct: 183 APCSGEGMFRKEPEAMRHWGPTAPERSARVQRSLIDHAGRLVRPGGVLVYSTCTFAPEEN 242

Query: 374 EEVVQKVLRSSPIPV-ELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430
           E+V+   L  +P  V E   L+ ++   +        E     R+ P  L          
Sbjct: 243 EQVIAHFLSRNPEFVLESAQLHPSFAPGVPAWGGGDLELAKTARLWPHRLRGE------- 295

Query: 431 DGFFAVALRR 440
            G F   LR+
Sbjct: 296 -GHFLAKLRK 304


>gi|291085245|ref|ZP_06352509.2| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF)
           [Citrobacter youngae ATCC 29220]
 gi|291072453|gb|EFE10562.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF)
           [Citrobacter youngae ATCC 29220]
          Length = 462

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  V     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 45  YNWSLTPVPWCAEGFWIERDDEESLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNTPE 104

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 105 RVMDVAAAPGSKTTQIAARMNNHGAILANEFSASRVKVLHANISRCGIANVALTHFDGRV 164

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDAVL+DAPCS  G IR+ PD L     +  +  A  QR LL      ++PG
Sbjct: 165 FGAALPETFDAVLLDAPCSGEGVIRKDPDALKNWSVESNLDIAATQRDLLDSAFHALRPG 224

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           GI+V+S C+L++ ++E ++Q ++ + P  VE +PL   + ++     AL+PEG++ + P 
Sbjct: 225 GILVYSTCTLNRDENENIMQWLIETYPDAVEFLPLGDLFPQA---ERALTPEGFLHVFPQ 281

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 282 IYDCE--------GFFVARLRKTA 297


>gi|257876507|ref|ZP_05656160.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC20]
 gi|257810673|gb|EEV39493.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC20]
          Length = 455

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 13/226 (5%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I   +        VLDLCAAPGGKT Q    +     + A ++  +
Sbjct: 76  HQAGYVYSQEPSAMIVATIAAAQPGERVLDLCAAPGGKTTQLASQLQGKGLLVANEIFPK 135

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R       +      +      + FD ++VDAPCS  G  R+ P  L   
Sbjct: 136 RAKILSENVERWGFPNVVVTNQAPQELSRHFPQFFDKIVVDAPCSGEGMFRKDPVALEEW 195

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D   + A  Q+ +L Q ++ +KPGG +++S C+   +++E ++  ++   P  +E + 
Sbjct: 196 QADTPDQCAIRQKDILAQAVAMLKPGGQLIYSTCTFAPEENEAMMAWLMEEYPFTIEAID 255

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L++      +   A   E  IR+ P + +          G FA  L
Sbjct: 256 LDNVSHGRSEWEAAPGIEKTIRLWPHLNQGE--------GHFAAKL 293


>gi|253741386|gb|EES98257.1| Nucleolar protein NOP2 [Giardia intestinalis ATCC 50581]
          Length = 497

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 137/375 (36%), Gaps = 35/375 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ------RIAGI 145
           ++ + D+     VD                 ++     R   +   +         I+  
Sbjct: 128 ELRHADI-YDPRVDEVTNIEGIRNRILRVVGVLADFKSRRHPDLSRMFYLELLKKDISAA 186

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM----- 197
               +   + L   +G     +   AC  P  + + V          A  L A       
Sbjct: 187 YGYSDGVIDILMGLFGPIDFHSFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDP 246

Query: 198 ---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++      I + P +  G + +QDA++ +P           +LD+ AAPGG
Sbjct: 247 LGDWCKDGLQIFSSQVPIGATPEYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGG 306

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAV 310
           KT  L   +     + A D+++ R+  L+ NL R+ +    I   DA +       FD V
Sbjct: 307 KTTHLGALMQDSGMILANDMNRDRIPALQANLARMGVTCAVISCSDARELAQCTGNFDRV 366

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP---GGIVV-FSNC 366
           L+DAPCS  G + +   +   R  +DI + +  Q++LL      +        +V +S C
Sbjct: 367 LLDAPCSGLGVVSKDASIKANRTFEDIHRLSHLQKELLNHAFDLLAKHPSNPRLVCYSTC 426

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKID 424
           S+   ++E V+  +L      VE+V L  ++ K       ++    +   P      +  
Sbjct: 427 SVTLSENEAVIDYIL--HKRNVEVVDLPFSFGKP-----GITKFNGMSYHPSIQKARRFY 479

Query: 425 GVSSGMDGFFAVALR 439
                  GFF   LR
Sbjct: 480 PHIHNTHGFFICLLR 494


>gi|220929585|ref|YP_002506494.1| RNA methylase, NOL1/NOP2/sun family [Clostridium cellulolyticum
           H10]
 gi|219999913|gb|ACL76514.1| RNA methylase, NOL1/NOP2/sun family [Clostridium cellulolyticum
           H10]
          Length = 471

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 130/311 (41%), Gaps = 24/311 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E+++   G E    + ++ I P +  L V     +    L         +  
Sbjct: 1   MKLPIEFVEKMQGLMGDEFASYL-ESYIKPRFYGLRVNTLKISVEEFLKIAPFHLEPVPW 59

Query: 206 ------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
                  +  ++    P +  G++++Q+ SA +P  + G      VLDLCAAPGGKT Q+
Sbjct: 60  ARDGFYYQEGDNPGRHPYYYAGLYYIQEPSAMLPGAVIGVKPGERVLDLCAAPGGKTVQM 119

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDA 314
              +     + A D++  R++ L  N++   +    ++    D      +  FD ++VDA
Sbjct: 120 AAQMKGQGLLVANDINSDRVKALVKNVELAGVRNALVLNEPPDKLAARFQNYFDRIMVDA 179

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+  D + + +     K    Q  +L +    +KPGG++++S C+   ++ E
Sbjct: 180 PCSGEGMFRKDEDAIKSWEKFKCEKCCGMQWNILEKVDMMLKPGGVILYSTCTFSPEEDE 239

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDM----AMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++++ +       EL+ +  A               + +   R+ P  L          
Sbjct: 240 LMIERFMDEHKGMYELLEIPKAGSVEGGRTQWSKGGYNFDKAARLWPHKL--------NG 291

Query: 431 DGFFAVALRRL 441
           +G FA  L++ 
Sbjct: 292 EGHFAALLQKK 302


>gi|154342166|ref|XP_001567031.1| nucleolar protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134064360|emb|CAM42450.1| putative nucleolar protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 625

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 122/313 (38%), Gaps = 24/313 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195
               E   + +   +     +   +A        + V          + A          
Sbjct: 222 YEYNELLMDSVLRLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEP 281

Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++ E    I     +  G + +Q A++ +PV       +  VLD+ AAPGG
Sbjct: 282 LEKWSKVGLQVFESNVPIAGTIEYLAGQYMLQAAASFLPVMALAPQEHERVLDMSAAPGG 341

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310
           KT  +   + +   + A DVS+ R + L  NL RL +    +   D   Y    + FD V
Sbjct: 342 KTTYIAQLMKNTGVLFANDVSEPRCKSLNSNLQRLGVTNCIVTNYDGTGYERVMRNFDRV 401

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS TG I R   +   +  +DI +++  QR LLL  I   +  G VV+S CS   
Sbjct: 402 LLDAPCSGTGIISRDKSIKMGKQYEDIQRASQLQRALLLSAIDACRVAGYVVYSTCSFLV 461

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSS 428
           ++ E +V   L+   + V  + L              +     R     ++  +      
Sbjct: 462 EEDEAIVDFALKRRDVQVVEMGLPFGRP-------GFTKYRHHRYHDSLELSRRYFPHVH 514

Query: 429 GMDGFFAVALRRL 441
            MDGFF   L++L
Sbjct: 515 NMDGFFVCKLKKL 527


>gi|327252957|gb|EGE64611.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli
           STEC_7v]
          Length = 479

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERNDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|223933469|ref|ZP_03625453.1| Fmu (Sun) domain protein [Streptococcus suis 89/1591]
 gi|302023879|ref|ZP_07249090.1| NOL1/NOP2/sun family protein [Streptococcus suis 05HAS68]
 gi|330832922|ref|YP_004401747.1| Fmu (Sun) domain-containing protein [Streptococcus suis ST3]
 gi|223897842|gb|EEF64219.1| Fmu (Sun) domain protein [Streptococcus suis 89/1591]
 gi|329307145|gb|AEB81561.1| Fmu (Sun) domain protein [Streptococcus suis ST3]
          Length = 433

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 118/311 (37%), Gaps = 31/311 (9%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F ++  +  G E   A  ++               E+   +L+           
Sbjct: 1   MQLPQDFIDKYNHLLGSE-AQAFFESFEQDPISGFRTNPLKES---QLDFEQPIPNMTWS 56

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                S    P    G+ + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 57  YYGKVS-GKSPEHVTGLVYSQEPAAQVVGQIAAPEKGMKVLDLAAAPGGKSTHLLSYLEN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D         FD +++DAPCS  G
Sbjct: 116 TGLLVSNEISNKRAKILAENIERFGARNVVVTNESADRLAKVFPGYFDMIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +         + A  QR++L   ++ + PGG +++S C+   +++EEVV  +
Sbjct: 176 MFRKDPDAIQYWSKHYPAQCASLQREILESALNMLAPGGQLIYSTCTWSPEENEEVVTWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR- 439
           L    + +  +P  +   + +            R+ P                F    R 
Sbjct: 236 LEQYDLELIDIPKINGMVEGVGYPEVA------RMYPHHFAGEGQ--------FVAKFRF 281

Query: 440 ------RLIQP 444
                 + ++P
Sbjct: 282 LGEVSQKKLKP 292


>gi|87199770|ref|YP_497027.1| Fmu (Sun) [Novosphingobium aromaticivorans DSM 12444]
 gi|87135451|gb|ABD26193.1| Fmu (Sun) [Novosphingobium aromaticivorans DSM 12444]
          Length = 395

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 96/456 (21%), Positives = 155/456 (33%), Gaps = 76/456 (16%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISL----TCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  LL  V+    +       +    +    F  +  +D+  +R +V  
Sbjct: 1   MTPS--ARVQAAIDLLDAVIAAAKAQGASADRIAADWFRSRRF--VGSKDRRAIRELVWS 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R                +P    +   +LRV+VA                        
Sbjct: 57  AIRVCGE------------VPESGRA--AMLRVAVA------------------------ 78

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY--GKERVLAISDACI 173
            +   A L +          I   +  A     P W  ERL        E+   +  A +
Sbjct: 79  -DPGIAALFDG--STYGPAPIRAGEVAAEGGNAPAWLSERLRQSGLGEDEQAALLGRAPL 135

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
                 L +  D       +   +             +  S P F EG++ VQD+ + I 
Sbjct: 136 DIRANTLRITRDELRLRLPVELEVTAAPDALRLPSGTAAESWPEFQEGLFEVQDSGSQIA 195

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
                     +V+DLCA  GGKT      + +  ++ A D+ + RL +L     R  + A
Sbjct: 196 CMALDVKPGEAVVDLCAGGGGKTLSLGAAMANTGELLACDIDRARLSRLPDRAARAGVLA 255

Query: 291 ----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                +  +            DAV+VDAPCS TGT RR+P+  W  D   I +    Q  
Sbjct: 256 QTRLLNPGKEAEMLADWAGRADAVMVDAPCSGTGTWRRNPEARWRLDPRSIERYCTMQAN 315

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L  G   V+PGG + +  CSL   +  + ++  L + P     +P   A  +       
Sbjct: 316 VLEIGAGLVRPGGRLTYVVCSLIDAEGRDRIEAFLAAHPDWSVAMPPLPA-GRPHGKGWR 374

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           L+P G                 G DGFF   + R +
Sbjct: 375 LTPLG----------------DGTDGFFFATIVRRV 394


>gi|307265300|ref|ZP_07546858.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919744|gb|EFN49960.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 469

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 16/252 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E   +      G++++Q+ +A   V++        +LD+ AAPGGKT 
Sbjct: 60  PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
                I     + A ++ K+R++ L  N++R+ +    I     +      +  FD +LV
Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLTTAFEGYFDKILV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        ++++  +  Q+ +L    S +KPGGI+V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVISCSIIQKNILRNVASLLKPGGILVYSTCTFSPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSG 429
           +E V++K L   P         S Y+          P   +  +R+ P  +         
Sbjct: 240 NEGVIKKFLEERPEFEVEESELSKYFDRGHPEWVTGPLELKKCMRLWPHKVRGE------ 293

Query: 430 MDGFFAVALRRL 441
             G F   LR+ 
Sbjct: 294 --GHFIAKLRKK 303


>gi|26248098|ref|NP_754138.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           CFT073]
 gi|227885738|ref|ZP_04003543.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           83972]
 gi|300994213|ref|ZP_07180770.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           45-1]
 gi|301050816|ref|ZP_07197670.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           185-1]
 gi|306814337|ref|ZP_07448503.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           NC101]
 gi|26108501|gb|AAN80703.1|AE016761_278 Hypothetical protein yebU [Escherichia coli CFT073]
 gi|227837311|gb|EEJ47777.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           83972]
 gi|300297505|gb|EFJ53890.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           185-1]
 gi|300406341|gb|EFJ89879.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           45-1]
 gi|305852496|gb|EFM52947.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           NC101]
 gi|307553852|gb|ADN46627.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           ABU 83972]
 gi|315290364|gb|EFU49740.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           153-1]
          Length = 481

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  +    VE +PL   +        AL+ +G++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|124265465|ref|YP_001019469.1| Sun protein [Methylibium petroleiphilum PM1]
 gi|124258240|gb|ABM93234.1| Sun protein [Methylibium petroleiphilum PM1]
          Length = 449

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 105/445 (23%), Positives = 169/445 (37%), Gaps = 52/445 (11%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
             SLT  L                +   +A+    LR L    A+   ++  + P    +
Sbjct: 28  GRSLTDALATVPAAP---------RPGTQALAFRVLRGLGLARALRCQLVPKAPPAWVDA 78

Query: 82  LQQLLRVSVAQ-ILYLDVAD---YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           L         Q     D      + +V  AVE     +  R  A  VN++LRR  RE+  
Sbjct: 79  LLLSALALSHQDAESADTPPYAPHTLVSQAVEA--AKQRARAQAGFVNAVLRRHLREQAT 136

Query: 138 LLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTV-KFDIETWAH 191
                A     +   P W+ E L+  +  +    +          + +   + D  ++  
Sbjct: 137 QAAAAAKDPVAVWNHPRWWIETLQRDWPGQWAELLRANDRRAPMTLRVNQRQQDRASYLL 196

Query: 192 KLNAVMLPTGGIRLKEL----------PESIVSLPGFAEGVWWVQDASASIPVQ---LFG 238
           +L    +    +               P ++ +LPGFA+G   VQD +A +        G
Sbjct: 197 RLEQAGIAAHAVTRPGAIDAQAIELATPCAVSALPGFADGAVSVQDLAAQVAAPLLLGAG 256

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS-KRRLEKLRCNLDRLHLYAED--IIE 295
                 VLD CAAPGGKTA L+           +  RRL K+   L RL L A       
Sbjct: 257 LAPGARVLDACAAPGGKTAHLLELAELDLLALDADPRRLVKVSETLQRLGLRARTQAADA 316

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            D   +   + +DA+L+DAPCS++G +RRHPDV W R   D+   A  Q +LL      +
Sbjct: 317 RDVVAWWDGRPYDAILLDAPCSASGIVRRHPDVRWLRRASDLDALASTQAELLDALWPLL 376

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +PGG ++++ CS+ K +    +   L+ +P  +   P        +D    +S       
Sbjct: 377 RPGGRLLYATCSVFKAEGAHQIDAFLQRAPDAI-AQPSPGYLLPVVDNPGQVSE------ 429

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                     +    DGF+   L +
Sbjct: 430 --------GPLRPSTDGFYYALLEK 446


>gi|258512029|ref|YP_003185463.1| Fmu (Sun) domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478755|gb|ACV59074.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 479

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 112/312 (35%), Gaps = 26/312 (8%)

Query: 146 SIIPEWFKERLENFYGKE---RVLAISDACISPLYIDLTV------KFDIETWAHKLNAV 196
              P    +                +  A     +  L          ++          
Sbjct: 1   MRFPPDIPKAFVQQMEHWLGAEARDLVAALSDKPWRGLRYASVAKPHGELPKSLAPFLGD 60

Query: 197 MLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
            +P             +        G +++QD SA              +LDLCAAPGGK
Sbjct: 61  GVPWAADGFYLAHGPSLGYTVLHQAGAFYLQDPSAMAVAVALDPQPGERILDLCAAPGGK 120

Query: 256 TAQL-----IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-MDAFDYCPKKLFDA 309
           T           GA++ A D+ + R+  L  N +R+        E   A      + FDA
Sbjct: 121 TTHAALLAARRGGAQIVANDIHRDRVLALAENAERVGAPCAITNESPAALAEAWPQAFDA 180

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           ++VDAPCS  G  R+ P V      D   +    Q+ +L   ++ ++PGG +V+S C+L+
Sbjct: 181 MVVDAPCSGEGMFRKDPAVRAEWRPDAPERFQALQKDILHHALTMLRPGGRLVYSTCTLN 240

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI--RITPDMLEKIDGVS 427
             ++E+VV  +L   P+ +E +P    +  +     A   +  +  R+ P +        
Sbjct: 241 PLENEQVVLWLLDHYPVELEPLPDWPEWRPARSDWAADREDIRLAKRLWPHVGRGE---- 296

Query: 428 SGMDGFFAVALR 439
               G F    R
Sbjct: 297 ----GHFVARFR 304


>gi|103486517|ref|YP_616078.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256]
 gi|98976594|gb|ABF52745.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256]
          Length = 396

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 145/451 (32%), Gaps = 72/451 (15%)

Query: 1   MKSGMNAR-LVSSHLLSCV----MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M     AR   +  +L  +             +L        +     +D+  +RA+V  
Sbjct: 1   MTP--AARIQTAIEILDAIAAAAREGGAPADAILAEAMRARRYAG--SKDRRAIRALVYD 56

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +R             + S P    +   +L ++ AQ                  A    
Sbjct: 57  VIR------------AVRSAPESGRA--AMLALADAQ---------------PGLAALFD 87

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
            + +    + +   R                ++ E   + L      +  +    A  + 
Sbjct: 88  GSAYGPAPIAADEPRAQTGVAAEALIDLFDPLVGEEEHDSLLARAPLDLRVNRIKAGRA- 146

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                    D+ET   +   +     G RL     +    P +AEG + VQDA++     
Sbjct: 147 ---------DLETLFPEGAPIPGAPDGWRLPPETAA-AQHPAYAEGAFEVQDAASQYASA 196

Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                   +++DLCA  GGK    A L  + A + A D ++ RL++L    +R       
Sbjct: 197 ALAAAPGQAIVDLCAGGGGKTLAIASLTGNAADILACDTNRARLQQLPRRAERAGATRIA 256

Query: 293 IIEMDA-----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
              ++           +   D V VDAPCS +GT RR P++ W      + +    Q KL
Sbjct: 257 TRLLNPGQEVAMLADWQGRADRVFVDAPCSGSGTWRRSPELRWRLTPARLDRHLGDQAKL 316

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           +  G   V PGG ++++ CS+  ++    V   L   P                  A  L
Sbjct: 317 IDLGADLVAPGGKLLYAVCSIIAREGRAQVADFLNRHPGWTADADYLPGGVGRAAGAGFL 376

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                          +     G DGFF   L
Sbjct: 377 ---------------LTPAHDGCDGFFLARL 392


>gi|323339816|ref|ZP_08080085.1| NOL1/NOP2/sun family protein [Lactobacillus ruminis ATCC 25644]
 gi|323092689|gb|EFZ35292.1| NOL1/NOP2/sun family protein [Lactobacillus ruminis ATCC 25644]
          Length = 458

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 118/303 (38%), Gaps = 19/303 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F E+     G +   +  ++  +       +      + +    +  P     +
Sbjct: 1   MNLPDEFIEKYTKLLG-DEAESFFESFDTEPQKGFRLNPLKSNYQNVALNLEHPVDYSSV 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
             +     +      G  + QD SA    ++ G      +LDLCAAPGGK++ L   + +
Sbjct: 60  GYVGSVNGNSLEHQTGYVYSQDLSAMYVGEVCGPRPGEKILDLCAAPGGKSSHLASLMNN 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320
              + + +++++R   L  N++R+      +   D        ++ FD ++VDAPCS  G
Sbjct: 120 EGLLVSNEINRKRALILAENMERIGARNVIVTNEDPTGLLKTFEQFFDKIVVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+          D   + A  Q+ +L   +  +K GG +V+S C+   ++ E+++  +
Sbjct: 180 MFRKDHAATKYWHKDYPNECAARQKLILADAMKMLKQGGTLVYSTCTFAPEEDEQIITWL 239

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAV 436
           L   P  +ELVP+                     G +R+     +          G F  
Sbjct: 240 LNEYPY-LELVPIKKYSGMDEGRPAFSDGNEELRGCVRLMMHHFKGE--------GHFIA 290

Query: 437 ALR 439
            L+
Sbjct: 291 KLK 293


>gi|146325693|sp|Q8FGS9|RSMF_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 479

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  +    VE +PL   +        AL+ +G++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|160943941|ref|ZP_02091171.1| hypothetical protein FAEPRAM212_01442 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444617|gb|EDP21621.1| hypothetical protein FAEPRAM212_01442 [Faecalibacterium prausnitzii
           M21/2]
          Length = 545

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 126/331 (38%), Gaps = 14/331 (4%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---K 183
             + +   +   L        +P  + E+ E     +R   +  A        +TV   +
Sbjct: 13  PSQSIVWPQPAALYIPWEEKNMPTEYFEQRERALLGQRYEQLYAAPQQTAERGVTVSALR 72

Query: 184 FDIETWAHK----LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
              E +A +    L           + +        P    GV++ Q+ SAS    L G 
Sbjct: 73  TTPEQFAQRADFPLEPSPFCKAAFVVHQPDFKPGRHPYHHAGVFYSQEPSASSAAPLLGV 132

Query: 240 LNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
              + VLDLCAAPGGK++QL         + + +    R E L+ NL+R+ +    ++  
Sbjct: 133 QPGMRVLDLCAAPGGKSSQLAAALQGRGVLVSNEYVAARAEILKSNLERMGVSNAVVLNE 192

Query: 297 DAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                       FD VLVDAPCS  G  R+ P  L       + + A    ++L    + 
Sbjct: 193 TPARIAEALPEFFDRVLVDAPCSGEGMFRKEPVALQQHCEALVKQCAELGAQILDCAAAA 252

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           + PGG +V+S C+   ++ E  V   L+  P    L  +      +   A   +  G + 
Sbjct: 253 LAPGGQLVYSTCTFAPEEDEGQVAAFLQRHP-EFVLADVLGNVDYTFGSAGEENRTGGLP 311

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           +    + +I     G +G F   L +   P+
Sbjct: 312 LDVSKVRRIWPCQGG-EGHFMARLVKAGTPR 341


>gi|297526389|ref|YP_003668413.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255305|gb|ADI31514.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 465

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 158/461 (34%), Gaps = 44/461 (9%)

Query: 8   RLVSSHLLSCVMRKRI--SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           R +   ++  V        +   +               D+  V  IV    R+   +D 
Sbjct: 22  RRIVYAVIESVGLGFRVKPVQEAIRRVVSRYRISD-PIVDRR-VSGIVYSIYRYQGLLDK 79

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVA--QILYL------DVADYAVVDLAVEQAKRDKEN 117
           ++  +   +     Y+++  L V+    Q+               ++    E+       
Sbjct: 80  IVSDIAGFNPSSLPYNVRAALLVAAYVSQLDEKMSSSMKKTFKRYILRYLGEKIGDKAVR 139

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                    +            + +    + PE ++            L         + 
Sbjct: 140 EKIIGKTKLLFSNKWSPNSGEDRVLLKYRVSPELYRALARALRELGENLDDFLNSTMKIK 199

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGI--------RLKELPESIVS--LPGFAEGVWWVQD 227
             +     ++     +   +  +G          R   +  SI    +     G+   QD
Sbjct: 200 YRVFRVNSLKAKPEAVYKFLKDSGYRVELGKYSRRAIRVYGSIGKEIIRFIETGILVPQD 259

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284
            S+ + V++        + DLCAAPGGKT  L       +++ + ++ + R  +LR  L+
Sbjct: 260 ESSIVAVEILDPKPGSRIGDLCAAPGGKTTYLAEYTGLKSRIYSFEIYRDRARRLRLMLE 319

Query: 285 RLHL-YAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           R     +  +   DA +          D VL+D PCSSTG + R+PDV W    +D  K 
Sbjct: 320 RTGTDKSVQVFVRDAREAPSILGNNSMDYVLLDPPCSSTGALARNPDVRWRYSVEDAEKL 379

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QR+LL      ++  G ++++ CS+   + E +++  L        L+ LN  + +S
Sbjct: 380 VVLQRELLDSAWKILRKDGKLLYTVCSVLPWEGEHIIKDFLEKH-WDAMLISLNKPFKQS 438

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +       G +R  P +         G  GF+   L++ 
Sbjct: 439 PILP------GTMRAWPHI--------HGTIGFYYALLKKK 465


>gi|326804037|ref|YP_004321855.1| NOL1/NOP2/sun family protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650301|gb|AEA00484.1| NOL1/NOP2/sun family protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 480

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 105/301 (34%), Gaps = 21/301 (6%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL----NAVMLPTGGIRLKE 207
           F ++     G E     +            +                  + P        
Sbjct: 7   FIDKFNQLLGDEAADFFAALNKGESQKAFRINPLKAKAQAICQSYFEEELTPCPYSPWGY 66

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264
           L +     P    G+ + Q+ASA     +        +LDLCAAPGGK+ Q    +    
Sbjct: 67  LGQVDGHSPLHQAGLVYSQEASAMAVASVVQAQPGEKILDLCAAPGGKSTQIAADMQGQG 126

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++  +R + L  N++R+ +    +   D           FD VLVDAPCS  G  
Sbjct: 127 LLVANEIIPKRAKILAENIERMGISNALVTNHDPESLATYFPGFFDKVLVDAPCSGEGMF 186

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            +          +  +     Q+++L Q +  +K GG +++S C+   +++EEV+  +L 
Sbjct: 187 TKSQAAREGWSKETPLLCQERQKEILGQAVRMLKAGGQLIYSTCTFSPEENEEVIAWLLD 246

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEG----WIRITPDMLEKIDGVSSGMDGFFAVAL 438
                +E +        S   +     +      +RI P              G F   L
Sbjct: 247 QGDFDLEWIDNFPPETVSRGRSDWSRSDYDLSPCVRIWPHRSIGE--------GHFIARL 298

Query: 439 R 439
           +
Sbjct: 299 K 299


>gi|253573323|ref|ZP_04850666.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846851|gb|EES74856.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 513

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 124/323 (38%), Gaps = 38/323 (11%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF------DIETWAHKLNAVMLPT 200
            +P+ F ER+    G+E       +  SP +  + V        D +         +   
Sbjct: 4   QLPKEFIERMRGLLGEEEFANFYASYDSPKFAGIRVNTLKIDPIDFKAVVPFDLRPIPWC 63

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
                 E        P +  G++++Q+ SA  PV+L        VLDLCAAPGGK+ Q+ 
Sbjct: 64  QTGYYVEEQAKPGKHPYYHAGLYYIQEPSAMAPVELLDVTPGERVLDLCAAPGGKSTQIA 123

Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAP 315
                   +   D++  R + L  N++   +    +     +         FD +L+DAP
Sbjct: 124 AKLCGRGMLVTNDINPERTKALAKNIELYGVRNAVVLGESPERIARAFPSFFDKILIDAP 183

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+  D+    + + + K A  Q+++L    + + PGG +V+S C+   +++E 
Sbjct: 184 CSGEGMFRKDEDMARHWEPNWVRKYADMQQEILKSAAAMLAPGGRIVYSTCTFAPEENEA 243

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS------------------PEGWIRITP 417
            + + L   P    +VPL   Y  +      L+                    G  R+ P
Sbjct: 244 TIAEFLLEHP-EFRVVPLGLDYGIAPGRPEWLTWLADRGEGKMYPPEIAEQTAGCGRLWP 302

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
             +E          G F   L R
Sbjct: 303 HQVEGE--------GHFLAVLER 317


>gi|205359812|ref|ZP_03224420.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205342570|gb|EDZ29334.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320085643|emb|CBY95421.1| Ribosomal RNA small subunit methyltransferase F rRNA
           (cytosine-C(5)-)-methyltransferase rsmF; 16S rRNA
           m5C1407 methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 513

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNREENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|324113570|gb|EGC07545.1| NOL1/NOP2/sun family protein [Escherichia fergusonii B253]
          Length = 479

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YNWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE + L   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLTLGDLFP---GADKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|83955440|ref|ZP_00964071.1| NOL1/NOP2/sun family protein [Sulfitobacter sp. NAS-14.1]
 gi|83840084|gb|EAP79259.1| NOL1/NOP2/sun family protein [Sulfitobacter sp. NAS-14.1]
          Length = 386

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 143/452 (31%), Gaps = 79/452 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L+ +    +     L      S +     +D+  VR  V   LR 
Sbjct: 1   MTPG--ARISAAIEILNTM-ADGVPAEQALTRWARGSRYAG--SKDRAAVRDHVFDVLRQ 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                  L   L      +   +  +LR                    ++ A        
Sbjct: 56  RR-----LAAHLGGGDTGRALMI-GVLRA-----------------QGIDLAPLFNG--- 89

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                   L        +    +A +  +P+W     +   G +   A++ A  S   I 
Sbjct: 90  -QGHAPLPLSDAEATTPDAPSDMATLWNLPDWIIPLFQASLGAD-AEAVAQALQSRAPIS 147

Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLK-------ELPESIVSLPGFAEGVWWVQDAS 229
           + V      +   A  L    + T    L        E    + +   +  G   +QDA+
Sbjct: 148 VRVNTAQATVADVAEALAEAGIETRTNDLCATALTVTEGERKLRNSDSYLHGDVELQDAA 207

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +   V          +LD CA  GGK  A      A V A D+  RR+  L    DR   
Sbjct: 208 SQAVVAALPEAE--RMLDYCAGGGGKALAMAARRDATVFAHDIDPRRMVDLPARADRAGA 265

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               + ++   +      FD VL DAPCS +G+ RR P+  WT     + +    Q K+L
Sbjct: 266 T---VRQVTTDELDGAGPFDVVLCDAPCSGSGSWRRSPEGKWTFTAGRLEELTQIQDKIL 322

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               +     G + ++ CS+ + ++E+     L  +P                       
Sbjct: 323 DHAATLTAESGTLAYATCSVLQYENEDRAAAFLARNPD---------------------- 360

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     +  K   V +  DGFF    RR
Sbjct: 361 -------WTQVFAKRFHVDAQGDGFFTAHFRR 385


>gi|302525884|ref|ZP_07278226.1| fmu protein [Streptomyces sp. AA4]
 gi|302434779|gb|EFL06595.1| fmu protein [Streptomyces sp. AA4]
          Length = 371

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 133/384 (34%), Gaps = 40/384 (10%)

Query: 82  LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
           +   LR+   Q+L   + ++A V   V+  + +  +       N+ILR VS +       
Sbjct: 2   VLDALRLGAYQLLRTRIPEHASVGSTVDLVRAEAGS-WATGFANAILRAVSTKDEAQWLD 60

Query: 142 -------------IAGISIIPEWFKERLENF--YGKERVLAISDACISPLYIDLTVKF-- 184
                         A  +  P W               + A  +A  +   + L  +   
Sbjct: 61  ELSPDEATDPIGAYALRTAHPRWVARSFAEALGDKGAELKAALEADDARPAVHLVARPGE 120

Query: 185 -DIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +  A             G+ L              E +  VQD  + +       + 
Sbjct: 121 ISADELAAITGGDPAPYSPYGVHLPAGAGDPADAEPVRERLAAVQDEGSQLCAIAVTKVP 180

Query: 242 ----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEM 296
               +   LDLCA PGGK A L        A  D  ++   + R   +        +   
Sbjct: 181 LEGSDERWLDLCAGPGGKAALLGALAKISGAHVDAVEKAPHRARLIENATEGLPATVHVA 240

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D  +   +  +D +LVDAPCS  G +RR P+  W R   D+      Q +LL+  +  V+
Sbjct: 241 DGRESGLEPGYDRILVDAPCSGLGALRRRPEARWRRKPSDVADLTKLQGELLMAALDLVR 300

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGGIV +  CS    ++E VV +  R +    E+V     +     +        ++++ 
Sbjct: 301 PGGIVTYVVCSPHLAETEGVVGETARRTKS--EIVDAREFFPDVPQLGDGP----YVQLW 354

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P           G D  F   LR+
Sbjct: 355 PH--------RHGTDAMFCAVLRK 370


>gi|310641379|ref|YP_003946137.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus polymyxa SC2]
 gi|309246329|gb|ADO55896.1| tRNA (Cytosine-5-)-methyltransferase [Paenibacillus polymyxa SC2]
          Length = 555

 Score =  140 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 128/313 (40%), Gaps = 30/313 (9%)

Query: 147 IIPEWFKERLENFYGKE-RVLAISDACISPLYIDLT-----VKFDIETWAHKLNAVMLPT 200
            +P  F +R+E   G E      +        I +      V+   E    +L  +    
Sbjct: 4   QLPTAFVKRMEQLLGDEFEAFMAAYDHTPHAGIRVNTLKIPVEDFKERSPFELRPIPWCA 63

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
            G  +    +     P +  G+++VQ+ SA  PV+L       +VLDLCAAPGGK+ Q+ 
Sbjct: 64  TGFYIPHGTKP-GLHPYYHAGLYYVQEPSAMSPVELLNVAQGEAVLDLCAAPGGKSTQIA 122

Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAP 315
                   +   D+S  R + L  N++   +    ++    D         F+ +L+DAP
Sbjct: 123 AKLQGSGILVTNDISVDRTKALAKNVELYGVRNAVVLNESPDRIADAFPHFFNKILIDAP 182

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+  D+    +T  + K    QR +L    S +  GG +V+S C+   +++E 
Sbjct: 183 CSGEGMFRKDEDMAKQWETHSVEKCVVMQRDILRVAASMLSDGGRIVYSTCTFAPEENEG 242

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---------GWIRITPDMLEKIDGV 426
           ++ + L + P    +VP+ S    +      ++ E         G  R+ P ++E     
Sbjct: 243 MIAEFLDAHP-DFNVVPVPSEAGFAPGHPEWMNEEIASAHPELRGTARLWPHLVEGE--- 298

Query: 427 SSGMDGFFAVALR 439
                G F   L+
Sbjct: 299 -----GHFIAVLQ 306


>gi|82777228|ref|YP_403577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella dysenteriae
           Sd197]
 gi|81241376|gb|ABB62086.1| putative nucleolar proteins [Shigella dysenteriae Sd197]
          Length = 481

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDIAAAPGSKTTQIAARMNNEGTILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GTNKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|213615624|ref|ZP_03371450.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 418

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|309788247|ref|ZP_07682851.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           dysenteriae 1617]
 gi|146325705|sp|Q32F19|RSMF_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|308923629|gb|EFP69132.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           dysenteriae 1617]
          Length = 479

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDIAAAPGSKTTQIAARMNNEGTILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GTNKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|254452165|ref|ZP_05065602.1| NOL1/NOP2/sun family protein [Octadecabacter antarcticus 238]
 gi|198266571|gb|EDY90841.1| NOL1/NOP2/sun family protein [Octadecabacter antarcticus 238]
          Length = 387

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 150/455 (32%), Gaps = 81/455 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   +  +L  +  +  +    L        F     +D+  +R  V   LR 
Sbjct: 1   MTP--AARVAAAIEVLDLIF-EGATPEKSLTGWGRRHRFAG--SKDRAAIRDHVFQALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVS--VAQILYLDVADYAVVDLAVEQAKRDKEN 117
                 +               +   +R +  V ++ +  +A    +    E A+  ++ 
Sbjct: 56  RASYAWLGGAQSGRG------VMLGAMRAAGQVDEM-FSGIAHAPRLVEDGEDARAIEDA 108

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
                                    A  + IPEW     +   G +    + +   +   
Sbjct: 109 DR-----------------------ATQNDIPEWLLPHFDGALGAD-SDGVMETLKTRAG 144

Query: 178 IDLTVKFDIETWAHKLNAVMLP----------TGGIRLKELPESIVSLPGFAEGVWWVQD 227
           + L V          ++ +                +++ +    +     +  G+  +QD
Sbjct: 145 VFLRVNAARTDTMETIDVLAHDGVTVVLVRDIKNALQVTDNERRVAQTDAYLTGLIELQD 204

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
           AS+   +   G      VLDLCA  GGK   +   GA V A D+  RR+  L    DR  
Sbjct: 205 ASSQHAMISLGLTAGQRVLDLCAGGGGKALAMAALGADVVAHDIDPRRMVDLAPRADRAG 264

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           +  E ++        P   FD VLVDAPCS +GT RR P   W    + +++    Q  +
Sbjct: 265 VVIETVLTDALATLAP---FDVVLVDAPCSGSGTWRRTPAAKWDLTPERLLELNQIQADV 321

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L+Q    V  GG + ++ CS+   ++ + + +    +     +                 
Sbjct: 322 LVQAAPLVGVGGTLAYATCSVFDVENGDRIDEFTEKNGDFEVI----------------- 364

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                        + +    +  DGFF V LRR  
Sbjct: 365 ------------SKSLRRPRADGDGFFFVQLRRTT 387


>gi|260663067|ref|ZP_05863960.1| RNA methylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552688|gb|EEX25688.1| RNA methylase [Lactobacillus fermentum 28-3-CHN]
          Length = 457

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G  + Q+ SA +  +      +  VLDLCAAPGGK+      +     + A ++ K R +
Sbjct: 77  GWVYSQEPSAMLVGEFADPQPDERVLDLCAAPGGKSTHLIAKMNDEGLLVANEIFKNRAQ 136

Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +     D  +      FD +LVDAPCS  G  R+ P  +   + D
Sbjct: 137 VLAENLERWGAKHVVVANESPDQLEKQFPAFFDRILVDAPCSGEGMFRKEPAGIEYWNED 196

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  QR +L   +  +KPGG +V+S C+   ++ E++   +L +  + +  +    
Sbjct: 197 YPAECANRQRHILTSALKMLKPGGTLVYSTCTFAPEEDEQMAAWLLNNYDLTMVELEKAP 256

Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +PE    +R+ P   +          G F     +
Sbjct: 257 GMDAGRPEWADGNPELTKALRLFPHHFKGE--------GHFIAKFVK 295


>gi|62128049|gb|AAX65752.1| paral putative rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 513

 Score =  140 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGTILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|225165744|ref|ZP_03727537.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
 gi|224800014|gb|EEG18450.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
          Length = 430

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 147/443 (33%), Gaps = 31/443 (6%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ ++  +         +L    G+   R LS  ++  +   V    R+L  ++    
Sbjct: 6   QRAALIIDQI-TPDHPADSVLRRALGE--LRHLSPAERRDISHAVFSYHRWLRWVEE--- 59

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                S PR       L      Q  +        ++    +A  D              
Sbjct: 60  -----SGPRTAQVAAALEL----QRRFDADPASIKIEALAARAVPDWVLDAIDFPDAPPA 110

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
              +          +  +  P W + + E      R L   +              ++ +
Sbjct: 111 PANAGVSARAAWLRSLQTPAPLWLRVQREFADKLPRALGHCEPQPPVPSASPPSSANLAS 170

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
           +   L A             P+ +     F +G++ +QD ++ +           +  D 
Sbjct: 171 FYSALRAPTAFRYT-----GPKDLYRTDEFKQGLFEIQDLASQLVGHACNPQPGETWWDT 225

Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-K 304
           C   GGKT  L   + +   + A D    RL  LR    R H Y    +  +   + P K
Sbjct: 226 CCGEGGKTLHLSDLMDNRGLIWATDRHTGRLATLRKRAARAHAYNYRAVTWNGGPFLPTK 285

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             FD +L+DAPCS TGT +R+P   WT   DD+ + A  Q +LL      +KPGG ++++
Sbjct: 286 TKFDGILIDAPCSGTGTWQRNPHARWTTTQDDVSELAEIQLQLLNHASPALKPGGRLIYA 345

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPL-------NSAYWKSIDMAMALSPEGWIRITP 417
            C+L + ++  +      +     E V L       NS            +       T 
Sbjct: 346 VCTLTRAETTAIANAFTAARTADFEPVALPFFSNAENSGEPGGARSGKTDTAHATSSATA 405

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                +       +G F  A RR
Sbjct: 406 PSQLTLWPHEHNANGMFIAAWRR 428


>gi|46446031|ref|YP_007396.1| putative 16S rRNA m5C967 SAM-dependent methyltransferase
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399672|emb|CAF23121.1| putative 16S rRNA m5C967 SAM-dependent methyltransferase
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 377

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 151/441 (34%), Gaps = 89/441 (20%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             LL    R+ + L   +   + + +   L  +D+  +   +   +R+   ++ +     
Sbjct: 13  FSLLEAYDRQTLPLDLFISHYFREHS--SLGSKDRGFLAETIYALIRWKGLLEYLAPSSS 70

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                               Q  Y       +V    + +K                   
Sbjct: 71  -------------------WQEKY-------IVYQTTDLSKMQARED------------- 91

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIET 188
                     +      P    E  E  YG E+ + +     +     + V       ++
Sbjct: 92  --------IPLHARVSFPSHLFELFEECYGVEKAVNLCLINNTTAPTTIRVNRIKTTRDS 143

Query: 189 WAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              +       +         +     +  SLP F EG++ VQD  + +  QL       
Sbjct: 144 LFKRWEGQYKISHTRYSSEGIIFHKKINFFSLPEFKEGLFEVQDEGSQLLAQLVRPKPGD 203

Query: 244 SVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD CA  GGK    A  +    ++   D+    L++ +  L R  +    I+  ++  
Sbjct: 204 QVLDYCAGSGGKTLAFAPHMEHRGQIYLHDIRPFALQEAKKRLKRAGIQNSQILLPNSPQ 263

Query: 301 YCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               KK  + +LVDAPC+ TGT+RR+PD+ W  D   + +    QR +  + +SF+ P G
Sbjct: 264 LSKLKKKMNWILVDAPCTGTGTLRRNPDMKWKFDETVLPRLIGQQRTIFEKALSFLHPEG 323

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+  CS+   +++  ++  +++  + VE                              
Sbjct: 324 HIVYGTCSMLNAENQNQLEHFIKTYSLEVE----------------------------GE 355

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
           + +       MDGFF V L+R
Sbjct: 356 IFQTIPAQGEMDGFFGVVLKR 376


>gi|292659865|pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
           Thermus Thermophilus In Space Group P21212
          Length = 464

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 15/250 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P F  G++++Q+ SA     L        VLDL AAPGGKT 
Sbjct: 58  PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313
                      + A +V  +R+  L  N++R     A       A        F  VL+D
Sbjct: 118 HLAARXGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+  +           + A  Q+ LL Q    + PGG++V+S C+   +++
Sbjct: 178 APCSGEGXFRKDREAARHWGPSAPKRXAEVQKALLAQASRLLGPGGVLVYSTCTFAPEEN 237

Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430
           E VV   L++ P   +E   L+  +   +      +PE     R+ P  LE         
Sbjct: 238 EGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 290

Query: 431 DGFFAVALRR 440
            G F    R+
Sbjct: 291 -GHFLARFRK 299


>gi|229829979|ref|ZP_04456048.1| hypothetical protein GCWU000342_02085 [Shuttleworthia satelles DSM
           14600]
 gi|229791277|gb|EEP27391.1| hypothetical protein GCWU000342_02085 [Shuttleworthia satelles DSM
           14600]
          Length = 543

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 113/324 (34%), Gaps = 21/324 (6%)

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                    +  +   R  G+ + P                     +   P     +VK 
Sbjct: 31  MGSDFDAFMKSYQRQDRYHGLRLNPLAISAFWPVQGETPPTDISHLSDSQPARHPSSVKA 90

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            + +    L+  +            +     P    G++++Q+ SA  P           
Sbjct: 91  LLASVISDLSDPIPWAKDAYYYGEEDRPGKHPYHEAGLYYIQEPSAMAPAVYLDARPGEY 150

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLDLCAAPGGK++Q    +     + + ++   R   L  N++RL +    +   D    
Sbjct: 151 VLDLCAAPGGKSSQIAACMQGQGLLISNEIVPNRAAVLSENMERLGVVNAIVTNEDPDGL 210

Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD ++VDAPCS  G  R++   L     +++   A     +L      +K GG
Sbjct: 211 ADHFPLFFDKIMVDAPCSGEGMFRKNAIALLEWSPENVQVCADRDDLILDAADRMLKEGG 270

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
            +VFS C+    + E  +++ L   P   +E VPL      +         EG IR+ P 
Sbjct: 271 RLVFSTCTFAPAEDEGSIERFLDRHPNYQIERVPLYPGMTPA-------DLEGTIRLWPH 323

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
            L           G +   L +  
Sbjct: 324 KLRGE--------GHYIAVLCKKT 339


>gi|226313940|ref|YP_002773836.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|226096890|dbj|BAH45332.1| probable ribosomal RNA small subunit methyltransferase
           [Brevibacillus brevis NBRC 100599]
          Length = 470

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 19/256 (7%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
             +         + P      P  + G++++Q+ SA    +  G      +LDLCAAPGG
Sbjct: 57  EAVPWCENGFRYKEPARPGKHPFHSAGMYYLQEPSAMSAAEALGAQPGERILDLCAAPGG 116

Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309
           K+ Q    +     + A ++   R + L  NL+R  +    +          +    FD 
Sbjct: 117 KSTQLAAFLHGQGMLVANEIHPVRAKALSENLERCGVTNAVVTNETPERLQERFPQFFDR 176

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +LVDAPCS  G  R+ P+ +       + +    Q  +L    + +KPGG +V+S C+  
Sbjct: 177 ILVDAPCSGEGMFRKLPEAIEDWSPAKVTECHVMQGDILEAAAAMLKPGGTLVYSTCTFA 236

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-----WIRITPDMLEKID 424
             ++E+ +   L   P   E+VPL  A   S       SP+        R+ P  L+   
Sbjct: 237 PLENEQSLVNFLGRHP-EFEIVPLPHADCFSAGQPEWASPQNEQLTQTARLWPHRLQGE- 294

Query: 425 GVSSGMDGFFAVALRR 440
                  G +   L++
Sbjct: 295 -------GHYLAKLQK 303


>gi|15802248|ref|NP_288272.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H7 EDL933]
 gi|15831799|ref|NP_310572.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H7 str. Sakai]
 gi|195939736|ref|ZP_03085118.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H7 str. EC4024]
 gi|12515885|gb|AAG56825.1|AE005406_4 putative nucleolar proteins [Escherichia coli O157:H7 str. EDL933]
 gi|13362013|dbj|BAB35968.1| putative rRNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|209767728|gb|ACI82176.1| putative rRNA methylase [Escherichia coli]
 gi|209767730|gb|ACI82177.1| putative rRNA methylase [Escherichia coli]
 gi|209767732|gb|ACI82178.1| putative rRNA methylase [Escherichia coli]
 gi|209767736|gb|ACI82180.1| putative rRNA methylase [Escherichia coli]
          Length = 481

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 182 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|227515722|ref|ZP_03945771.1| tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|227085922|gb|EEI21234.1| tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931]
          Length = 469

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G  + Q+ SA +  +         VLDLCAAPGGK+      +     + A ++ K R +
Sbjct: 89  GWVYSQEPSAMLVGEFADPQPGERVLDLCAAPGGKSTHLIAKMNDEGLLVANEIFKNRAQ 148

Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +     D  +      FD +LVDAPCS  G  R+ P  +   + D
Sbjct: 149 VLAENLERWGAKHVVVANESPDQLEKQFPAFFDRILVDAPCSGEGMFRKEPAGIEYWNED 208

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  QR +L   +  +KPGG +V+S C+   ++ E++   +L +  + +  +    
Sbjct: 209 YPAECANRQRHILTSALKMLKPGGTLVYSTCTFAPEEDEQMAAWLLNNYDLTMVELEKAP 268

Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +PE    +R+ P   +          G F     +
Sbjct: 269 GMDAGRPEWADGNPELTKALRLFPHHFKGE--------GHFIAKFVK 307


>gi|145299018|ref|YP_001141859.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|167012765|sp|A4SMI9|RSMF_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|142851790|gb|ABO90111.1| Sun/nucleolar protein family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 476

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 22/263 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWWVQDASASIP----VQLFGTLNN 242
              + +AV     G  L    ES+   +      G++++Q+AS+ +P            +
Sbjct: 59  LGWQFDAVPWCETGFWLTRADESVPLGNTAEHLSGLFYIQEASSMLPVTALFASDQVKRD 118

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
             +LD  AAPG KT Q+   + +   + A + S  RL+ L  N+ R  +    +   D  
Sbjct: 119 GMLLDAAAAPGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAK 178

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            F     + FDA+L+DAPCS  GT+R+  D L     + I + A  Q+ LL      +KP
Sbjct: 179 VFGQWLPETFDAILLDAPCSGEGTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHALKP 238

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L +Q+++ V Q +L      + L  L   +    +   A +PEG++ + P
Sbjct: 239 GGVLVYSTCTLSQQENQAVCQSLLEKFGDALTLDSLADLFP---NAEQACTPEGYLHVWP 295

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            + +          GFF   LR+
Sbjct: 296 QIFDSE--------GFFVARLRK 310


>gi|187776449|ref|ZP_02802778.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4196]
 gi|189010611|ref|ZP_02808140.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4076]
 gi|189402623|ref|ZP_02783593.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4401]
 gi|189404116|ref|ZP_02787380.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4501]
 gi|189405107|ref|ZP_02813260.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC869]
 gi|208816841|ref|ZP_03257961.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821320|ref|ZP_03261640.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399709|ref|YP_002270917.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4115]
 gi|254793459|ref|YP_003078296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H7 str. TW14359]
 gi|261227667|ref|ZP_05941948.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258167|ref|ZP_05950700.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H7 str. FRIK966]
 gi|146325690|sp|Q8XCL9|RSMF_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|226725334|sp|B5YQX9|RSMF_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|187767061|gb|EDU30905.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4196]
 gi|188999444|gb|EDU68430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354637|gb|EDU73056.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4401]
 gi|189367398|gb|EDU85814.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372082|gb|EDU90498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC869]
 gi|208731184|gb|EDZ79873.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741443|gb|EDZ89125.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161109|gb|ACI38542.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4115]
 gi|254592859|gb|ACT72220.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|320188535|gb|EFW63197.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC1212]
 gi|320641687|gb|EFX11075.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H7 str. G5101]
 gi|320647046|gb|EFX15879.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H- str. 493-89]
 gi|320652329|gb|EFX20627.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H- str. H 2687]
 gi|320657930|gb|EFX25692.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320658503|gb|EFX26197.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320668402|gb|EFX35229.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 479

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|156098789|ref|XP_001615410.1| proliferating-cell nucleolar antigen p120 [Plasmodium vivax SaI-1]
 gi|148804284|gb|EDL45683.1| proliferating-cell nucleolar antigen p120, putative [Plasmodium
           vivax]
          Length = 615

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 121/315 (38%), Gaps = 22/315 (6%)

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKL--- 193
                     E   + L   +  + +    +    P  I L    VK       + L   
Sbjct: 195 FYYTYFYEYSEQLIKYLYYLFDLKELYMFLEMNNLPKEIHLRTNTVKITRNNLLNILKSQ 254

Query: 194 -----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
                        GI + +   ++ SL  +  G + +Q AS+ IPV         ++LD+
Sbjct: 255 NINAEEGANWNNVGIVINDANSNVGSLNEYLYGYYMLQSASSLIPVLELNVNPEDTILDM 314

Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCP 303
           CAAPGGK   +     +   V A DV+K R + +  N  RL +    I   D        
Sbjct: 315 CAAPGGKCTFICALQKNRGHVYANDVNKMRCKAIEANASRLGIQNLIITSFDALKIGKKW 374

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              FD +++DAPCS TG + ++      +   +I + A  QRKLL   IS VK GGIVV+
Sbjct: 375 TFQFDKIILDAPCSGTGVVNKNKGAR-RKTLKEIRELAQKQRKLLSNAISLVKNGGIVVY 433

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS+  +++E+V+  +L+   + V    +                         +  +I
Sbjct: 434 STCSITVEENEQVINYILKKRDVNVLPTDIQIGDPGITHYRKKEFSSKV-----ALCRRI 488

Query: 424 DGVSSGMDGFFAVAL 438
                  D FF   L
Sbjct: 489 YLHKHNQDNFFVAKL 503


>gi|162139578|ref|YP_216833.2| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583660|ref|YP_002637458.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|146325698|sp|Q57NF9|RSMF_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|254766867|sp|C0Q2Y5|RSMF_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|224468187|gb|ACN46017.1| hypothetical protein SPC_1879 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714889|gb|EFZ06460.1| paral putative rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 479

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGTILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|218291354|ref|ZP_03495308.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218238758|gb|EED05973.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 479

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 111/312 (35%), Gaps = 26/312 (8%)

Query: 146 SIIPEWFKERLENFYGKE---RVLAISDACISPLYIDLTV------KFDIETWAHKLNAV 196
              P    +                +  A     +  L          ++          
Sbjct: 1   MRFPPDIPKAFVQQMEHWLGAEARDLVAALSDKPWRGLRYASVAKPHGELPKSLAPFLGD 60

Query: 197 MLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
            +P             +        G +++QD SA              +LDLCAAPGGK
Sbjct: 61  GVPWAADGFYLAHGPSLGYTVLHQAGAFYLQDPSAMAVAVALDPQPGERILDLCAAPGGK 120

Query: 256 TAQL-----IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-MDAFDYCPKKLFDA 309
           T           GA++ A D+ + R+  L  N +R+        E   A      + FDA
Sbjct: 121 TTHAALLAARRGGAQIVANDIHRDRVLALAENAERVGAPCAITNESPAALAEAWPQAFDA 180

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           ++VD PCS  G  R+ P V      D   +    Q+ +L   ++ ++PGG +V+S C+L+
Sbjct: 181 MVVDTPCSGEGMFRKDPAVRAEWRPDAPERFQALQKDILHHALTMLRPGGRLVYSTCTLN 240

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI--RITPDMLEKIDGVS 427
             ++E+VV  +L   P+ +E +P    +  +     A   +  +  R+ P +        
Sbjct: 241 PLENEQVVLWLLDHYPVELEPLPDWPEWRPARSDWAADREDIRLAKRLWPHVGRGE---- 296

Query: 428 SGMDGFFAVALR 439
               G F    R
Sbjct: 297 ----GHFVARFR 304


>gi|213161347|ref|ZP_03347057.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213424193|ref|ZP_03357058.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 513

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|70945403|ref|XP_742525.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521557|emb|CAH82175.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 511

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 11/260 (4%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
                   +        I L +   ++ SL  +  G + +Q +S+ IPV       N  V
Sbjct: 254 KNKNIAIQDGSTWNNVDITLTDTSSNVGSLNEYLYGYYIIQSSSSLIPVLELNIKENELV 313

Query: 246 LDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFD 300
           LD+CAAPGGK   +           A D++K R + +  +  R+ +    I   D    +
Sbjct: 314 LDMCAAPGGKCTYICTIKKNKGIVYANDINKMRCKAIEAHAARMGINNLIITSFDSLKIN 373

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              K  FD +L+DAPCS TG + ++      +   +I   A  QRKLL   I  VK GGI
Sbjct: 374 KYFKFKFDKILLDAPCSGTGVVNKNKTAR-RKTIKEIRDLAQKQRKLLNNAIDIVKNGGI 432

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           V++S CS+  +++E+V+  +L+   + +    +N      I                 + 
Sbjct: 433 VIYSTCSITVEENEQVINYILKKRDVNLLPTDINIGDPGIIHYRKKQFSSKI-----ALC 487

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           ++I       D FF   L +
Sbjct: 488 KRIYLHKHNHDNFFVAKLVK 507


>gi|184155675|ref|YP_001844015.1| RNA methylase [Lactobacillus fermentum IFO 3956]
 gi|183227019|dbj|BAG27535.1| RNA methylase [Lactobacillus fermentum IFO 3956]
          Length = 457

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G  + Q+ SA +  +         VLDLCAAPGGK+      +     + A ++ K R +
Sbjct: 77  GWVYSQEPSAMLVGEFADPQPGERVLDLCAAPGGKSTHLIAKMNDEGLLVANEIFKNRAQ 136

Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +     D  +      FD +LVDAPCS  G  R+ P  +   + D
Sbjct: 137 VLAENLERWGAKHVVVANESPDQLEKQFPAFFDRILVDAPCSGEGMFRKEPAGIEYWNED 196

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  QR +L   +  +KPGG +V+S C+   ++ E++   +L +  + +  +    
Sbjct: 197 YPAECANRQRHILTSALKMLKPGGTLVYSTCTFAPEEDEQMAAWLLNNYDLTMVELEKAP 256

Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +PE    +R+ P   +          G F     +
Sbjct: 257 GMDAGRPEWADGNPELTKALRLFPHHFKGE--------GHFIAKFVK 295


>gi|326627545|gb|EGE33888.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 513

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLNSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++EEV   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|213419894|ref|ZP_03352960.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 371

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|46199323|ref|YP_004990.1| putative rRNA methyl transferase [Thermus thermophilus HB27]
 gi|46196948|gb|AAS81363.1| putative rRNA methyl transferase [Thermus thermophilus HB27]
          Length = 447

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 15/250 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P F  G++++Q+ SA     L        VLDL AAPGGKT 
Sbjct: 49  PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 108

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313
                +     + A +V  +R+  L  N++R     A       A        F  VL+D
Sbjct: 109 HLAAHMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGAYFHRVLLD 168

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+  + +         + A  Q+ LL Q    V PGG++V+S C+   +++
Sbjct: 169 APCSGEGMFRKDREAVRHWGPSAPKRMAEVQKALLAQAARLVGPGGVLVYSTCTFAPEEN 228

Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430
           E VV   L++ P   +E    +  +   +      +PE     R+ P  LE         
Sbjct: 229 EGVVVHFLKAHPEFRLEDARFHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 281

Query: 431 DGFFAVALRR 440
            G F    R+
Sbjct: 282 -GHFLARFRK 290


>gi|195873256|ref|ZP_02696581.2| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195634470|gb|EDX52822.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 513

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLNSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++EEV   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|295091132|emb|CBK77239.1| tRNA and rRNA cytosine-C5-methylases [Clostridium cf.
           saccharolyticum K10]
          Length = 479

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 103/267 (38%), Gaps = 20/267 (7%)

Query: 184 FDIETWAHKLNAVM---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
            D E +  +    +               +     P    GV+++Q+ SA   V L    
Sbjct: 31  TDRERFREETEFSLKPIPWAEEGYYYGAKDRPGRHPYHEAGVYYIQEPSAMAVVSLLDPK 90

Query: 241 NNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               VLDLCAAPGGKT+ +         + + ++   R   L  N +R+ +    +   D
Sbjct: 91  PGDRVLDLCAAPGGKTSHIASRLQGKGFLLSNEIHPARARILSQNAERMGIANGAVFNED 150

Query: 298 AFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
           +          FD ++VDAPCS  G  R+         +D +   A  Q ++L    + +
Sbjct: 151 SARLSAAFPEYFDKIVVDAPCSGEGMFRKDEGARAEWSSDKVRLCAQRQAEILENASAML 210

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPEG 411
           KPGG + +S C+   ++ E+ V+  L++ P      V+  P  S       +        
Sbjct: 211 KPGGTMAYSTCTFSPEEDEQAVEAFLKAHPEFKIKKVKKYPGMSDGVPGWTLEGREELSC 270

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +RI P          +G +G F   L
Sbjct: 271 AVRIWPH--------RTGGEGHFIAIL 289


>gi|194444109|ref|YP_002041104.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|200391079|ref|ZP_03217690.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|194402772|gb|ACF62994.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|199603524|gb|EDZ02070.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 513

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|320451132|ref|YP_004203228.1| tRNA and rRNA cytosine-C5-methylase [Thermus scotoductus SA-01]
 gi|320151301|gb|ADW22679.1| tRNA and rRNA cytosine-C5-methylase [Thermus scotoductus SA-01]
          Length = 455

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 15/250 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P F  G++++Q+ SA     L        VLDL AAPGGKT 
Sbjct: 58  PWCPEGFYYPKEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPQPGERVLDLAAAPGGKTT 117

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313
                +     + A +V  +R+  L  N++R     A       +        F  VL+D
Sbjct: 118 HLLARMGGRGLLLANEVDGKRIRGLLENVERWGGRLAVVQAPPRSLAEAFGPYFHRVLLD 177

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+ P+ +         +++  Q+ LL Q    + PGG++V+S C+   +++
Sbjct: 178 APCSGEGMFRKDPEAIRHWGPGAPRRASEVQKGLLSQAARLLGPGGVLVYSTCTFAPEEN 237

Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSP--EGWIRITPDMLEKIDGVSSGM 430
           E VV   LR  P   +E    +  +   +      +P  E   R+ P  LE         
Sbjct: 238 EGVVAHFLREHPEFHLEDARYHPLFAPGVPEWGDGNPELEKTARLWPHRLEGE------- 290

Query: 431 DGFFAVALRR 440
            G F   LR+
Sbjct: 291 -GHFLARLRK 299


>gi|229552298|ref|ZP_04441023.1| tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539707|ref|YP_003174206.1| tRNA and rRNA cytosine-C5-methylases [Lactobacillus rhamnosus Lc
           705]
 gi|229314280|gb|EEN80253.1| tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151383|emb|CAR90355.1| tRNA and rRNA cytosine-C5-methylases [Lactobacillus rhamnosus Lc
           705]
          Length = 443

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 15/226 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277
           G+ + Q+ SA     +        VLDLCAAPGGK+ QL         + + +++  R +
Sbjct: 73  GLVYSQEPSAQFVGTVAAPQKGERVLDLCAAPGGKSTQLASYLGETGLLVSNEINGPRSK 132

Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +   D         + FD +LVDAPCS  G  R+ PD +     D
Sbjct: 133 VLSGNLERWGSRNILVTNNDPDTLAAAWPQTFDRILVDAPCSGEGMFRKDPDAIQYWHRD 192

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  Q+ +L   I  ++PGG +++S C+   ++ E+++  +L    + +E +  + 
Sbjct: 193 YPAECAARQKVILQAAIKMLRPGGSLIYSTCTFSPEEDEQIIAWLLAHYDLTLEPIKKSP 252

Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                       +PE    +R+ P ++           G F   LR
Sbjct: 253 GMVAGRPEWADGNPELAKTVRLFPHLVRGE--------GHFVAKLR 290


>gi|56413232|ref|YP_150307.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362157|ref|YP_002141794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|81821455|sp|Q5PHN5|RSMF_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|226725345|sp|B5BHA6|RSMF_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|56127489|gb|AAV76995.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093634|emb|CAR59104.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 479

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E+V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEDVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|161613635|ref|YP_001587600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161362999|gb|ABX66767.1| hypothetical protein SPAB_01359 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 513

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|322649242|gb|EFY45680.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
          Length = 436

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDNAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|16760738|ref|NP_456355.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141504|ref|NP_804846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|81853268|sp|Q8Z662|RSMF_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|25511826|pir||AB0729 conserved hypothetical protein STY1981 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503035|emb|CAD05532.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137131|gb|AAO68695.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 479

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|225389039|ref|ZP_03758763.1| hypothetical protein CLOSTASPAR_02784 [Clostridium asparagiforme
           DSM 15981]
 gi|225044897|gb|EEG55143.1| hypothetical protein CLOSTASPAR_02784 [Clostridium asparagiforme
           DSM 15981]
          Length = 532

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 16/258 (6%)

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
              +L  V     G             P +  G++++Q+ SA  PV+L        VLDL
Sbjct: 54  LPWRLEPVPWVKTGFYYDGDQARPSRHPAYYAGLYYLQEPSAMTPVELLPVEPGDRVLDL 113

Query: 249 CAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           CAAPGGK+ QL         + + D+S  R   L  NL+   +    +            
Sbjct: 114 CAAPGGKSTQLGARLLGEGLLVSNDISNSRARALLKNLELAGIPNICVTSESPERLSQVF 173

Query: 306 L--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              FD +LVDAPCS  G  RR  +++           A  QR++L   ++ ++PGG +++
Sbjct: 174 PLYFDKILVDAPCSGEGMFRRDGEMVKDWALKGPAYYAPLQREILAAAVTMLRPGGTILY 233

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C+  +++ E  V+  L   P  +EL PL++         + L  +G +R+ P  ++  
Sbjct: 234 STCTFSREEDEGTVEYALNRFP-DLELKPLDTGLVPGACGGIGL--DGCMRLFPHRIKGE 290

Query: 424 DGVSSGMDGFFAVALRRL 441
                   G F   LR+ 
Sbjct: 291 --------GHFLALLRKK 300


>gi|237807375|ref|YP_002891815.1| Fmu (Sun) domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237499636|gb|ACQ92229.1| Fmu (Sun) domain protein [Tolumonas auensis DSM 9187]
          Length = 403

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 157/442 (35%), Gaps = 71/442 (16%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI--VNVTLRFLPRIDAVLDFVL 71
           +LS V+ ++  +      E+           +   +  I  V   LR L     +L F+ 
Sbjct: 17  ILSAVLNEKSPVDRATAQEFKMEPMP-----EAAQIHVIGAVGDILRHLN----LLAFLA 67

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
              + +   ++Q L                  +        R   N   A L +  +   
Sbjct: 68  DVPMAQAGIAVQSL------------------ICQWHLLRNRQLPNLRAADLCDVKMFEA 109

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTVKFDIET-W 189
            RE     Q+ A     PEW ++  +   G++      +    +  YI +      ET  
Sbjct: 110 RRE--LAQQQPALWDGCPEWLEQLGQEQLGEQWPAEREALTHAAKRYIRVNTLKCNETQL 167

Query: 190 AHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
            H+L    + T  +             S+   P F +G +  QDA +       G    +
Sbjct: 168 QHRLQQEHIETRAVPDVPGALEVTSNGSLFRTPAFKDGWFEQQDAGSQHIAPFLGVEPGM 227

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDA 298
            V+D CA  GGKT  L   +    ++ A+DV + +++ LR    R   +     +IE   
Sbjct: 228 RVIDACAGTGGKTLHLAALMAGKGRLLAMDVEQWKVDNLRLRARRAGAHNIEPRLIESSK 287

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                K+  D VL+D PCS  G ++R+PD  W    + +      Q  +L +    VK G
Sbjct: 288 TIKRLKESADRVLLDVPCSGLGVLKRNPDTKWRDTAERLPVLLELQADILRRYSKMVKVG 347

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V++ CSL   ++++ V + +        L+                           
Sbjct: 348 GQLVYATCSLLPAENQDQVARFINECDGQFTLL--------------------------- 380

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
             + I    +G DGF+   L+R
Sbjct: 381 REQTISPAETGFDGFYMALLQR 402


>gi|167553462|ref|ZP_02347211.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205322100|gb|EDZ09939.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 479

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|227510336|ref|ZP_03940385.1| tRNA/rRNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189988|gb|EEI70055.1| tRNA/rRNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 467

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 114/303 (37%), Gaps = 18/303 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ FK +     G++  L    +          +    +     +N  +        
Sbjct: 1   MQLPDDFKNKYTKLLGQQEALQFLASFSKTANHGFRLNPLKQN--QPVNIDLSHPTAHCQ 58

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +         G  + Q+ SA    ++        VLDLCAAPGGKT      + 
Sbjct: 59  LGYYGDVSGKTVAHQSGAVYSQEPSAMYVGEVAAPKAGERVLDLCAAPGGKTTHVGSYMA 118

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319
           +   + A ++  +R + L  N++R  L    +          +    FD +LVDAPCS  
Sbjct: 119 NSGLLIANEIDHKRSKVLMENVERFGLTNTIVTNSTPEIIAKQLPNFFDRILVDAPCSGE 178

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +         + A  QR++L + +  +K GG +++S C+   ++ E+++  
Sbjct: 179 GMFRKDPDAVSYWSLGYPEECATRQRQILSETVKNLKHGGELIYSTCTFAPEEDEQIIAW 238

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +++     +  V                +P+    +RI P+            +G F   
Sbjct: 239 LVKQYHFDILPVKKFPGMDNGRPDWADGNPDLVNCVRIFPNHF--------NGEGHFIAK 290

Query: 438 LRR 440
           L++
Sbjct: 291 LKK 293


>gi|194449925|ref|YP_002045895.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194408229|gb|ACF68448.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
          Length = 513

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLNSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++EEV   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|168234498|ref|ZP_02659556.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205331591|gb|EDZ18355.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 479

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 128/266 (48%), Gaps = 21/266 (7%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTL 240
           IE +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        
Sbjct: 57  IEPYGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDN 116

Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           + L V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D
Sbjct: 117 HPLRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFD 176

Query: 298 AFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
              +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      +
Sbjct: 177 GRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHAL 236

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +PGG +V+S C+L++Q++EEV   +  +    VE +PL   +    D   AL+PEG++ +
Sbjct: 237 RPGGTLVYSTCTLNRQENEEVCLWLQETYADAVEFLPLGDLFP---DADRALTPEGFLHV 293

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P + +          GFF   LR++
Sbjct: 294 FPQIYDCE--------GFFVARLRKM 311


>gi|327401876|ref|YP_004342715.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6]
 gi|327317384|gb|AEA48000.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6]
          Length = 308

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 16/252 (6%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
               G     +   SI +      G+ + Q+AS+ IP  +      + VLD+ AAPG KT
Sbjct: 63  WCREGFFIDIDEDSSIGTSIEHQLGLIFSQEASSMIPPVVLDVKPGMLVLDMAAAPGAKT 122

Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312
            Q    + +   + A DV   RL  L  NL R  +    +  MD   +   +  FDAVL+
Sbjct: 123 TQIAQYMQNEGCIIANDVKVGRLNILISNLQRCGVLIARVTMMDGRSFRKYENTFDAVLL 182

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS+ G IR++   L      D+   +  Q++L++   + +KPGG++V+S C+LD  +
Sbjct: 183 DAPCSNAGMIRKNYKYLKIWRLKDVESLSRLQKQLIMAAYAALKPGGVLVYSTCTLDPAE 242

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGWIRITPDMLEKIDGVSS 428
           +E+VV  +L ++   +E + L     K          +   +  +RI P          +
Sbjct: 243 NEDVVDHLLANTDARLEEIDLPVKRHKPFTSFDGKEFSSEVKKCLRIHPQD--------N 294

Query: 429 GMDGFFAVALRR 440
             +GFF   + +
Sbjct: 295 DTEGFFVAKIVK 306


>gi|168259905|ref|ZP_02681878.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205351006|gb|EDZ37637.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 479

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L        +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPKSNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++EEV   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEEVCLWLQETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|194469686|ref|ZP_03075670.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194456050|gb|EDX44889.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
          Length = 513

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 128/266 (48%), Gaps = 21/266 (7%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTL 240
           IE +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        
Sbjct: 91  IEPYGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDN 150

Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           + L V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D
Sbjct: 151 HPLRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFD 210

Query: 298 AFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
              +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      +
Sbjct: 211 GRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHAL 270

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +PGG +V+S C+L++Q++EEV   +  +    VE +PL   +    D   AL+PEG++ +
Sbjct: 271 RPGGTLVYSTCTLNRQENEEVCLWLQETYADAVEFLPLGDLFP---DADRALTPEGFLHV 327

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P + +          GFF   LR++
Sbjct: 328 FPQIYDCE--------GFFVARLRKM 345


>gi|308049577|ref|YP_003913143.1| 16S rRNA m(5)C-1407 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307631767|gb|ADN76069.1| 16S rRNA m(5)C-1407 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 470

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 20/259 (7%)

Query: 193 LNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDL 248
           L  V     G  L+   ES  + +      G++++Q+AS+ +P       +     VLD+
Sbjct: 60  LTPVPWCEEGFWLERDDESQTLGNTAEHLAGLFYIQEASSMMPPTALFTHSHAPQRVLDV 119

Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
            +APG KT Q+     +   + A + S  RL+ L  NL RL +    +   D   + P  
Sbjct: 120 ASAPGSKTTQIAARLDNQGLLLANEYSSSRLKGLHANLSRLGIRNVVMTHFDGRVFGPAL 179

Query: 306 L--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              FDA+L+DAPCS  GTIR+ PD     D + + + A  QR L+    + +KPGG++V+
Sbjct: 180 PEQFDAILLDAPCSGEGTIRKDPDAFANWDPESVEEIAELQRGLIESAFAALKPGGLLVY 239

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C+L+ +++++V Q +L   P  VE+  L   +        A + EG++ + P + +  
Sbjct: 240 STCTLNHRENQDVCQHLLDQYPDAVEVENLADLFP---GADRATTDEGYLHVWPQIYDSE 296

Query: 424 DGVSSGMDGFFAVALRRLI 442
                   GFF  ALR+  
Sbjct: 297 --------GFFVAALRKTA 307


>gi|256751534|ref|ZP_05492411.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749618|gb|EEU62645.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 460

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 16/256 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E   +      G++++Q+ +A   V++        +LD+ AAPGGKT 
Sbjct: 60  PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPRPGEKILDVSAAPGGKTT 119

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
                I     + A ++ K+R++ L  N++R+ +    I     +      +  FD +LV
Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLATAFEGYFDKILV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        ++++  +  Q+ +L   +S +KPGGI+V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVMSCSITQKNILRNVVSLLKPGGILVYSTCTFSPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSG 429
           +E V++  L   P         S ++          PE     +R+ P  +         
Sbjct: 240 NEGVIKNFLEEYPEFEVEESEMSKFFDRGHPEWVEGPEDLKKCMRLWPHKVRGE------ 293

Query: 430 MDGFFAVALRRLIQPK 445
             G F   LR+  + +
Sbjct: 294 --GHFIAKLRKKEEEE 307


>gi|257096812|sp|B4SV89|RSMF_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 479

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|197264965|ref|ZP_03165039.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243220|gb|EDY25840.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 513

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|319943233|ref|ZP_08017516.1| rRNA small subunit methyltransferase B [Lautropia mirabilis ATCC
           51599]
 gi|319743775|gb|EFV96179.1| rRNA small subunit methyltransferase B [Lautropia mirabilis ATCC
           51599]
          Length = 476

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 143/444 (32%), Gaps = 58/444 (13%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
                 L           L  RD+  +   V   LR     ++ L+    +    +  ++
Sbjct: 56  APADQQLGAWLRRHP--SLGARDRRWLSDRVYDVLRHGRAYESFLEEGGRADADGQASAV 113

Query: 83  QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142
           +              +     +  A+                N+     +  +    Q  
Sbjct: 114 R------------ERLPGLMRLSEALR--------------TNAGPEAAAYRQWLEQQPP 147

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPT 200
           A    +P+W  E L   +G++     +   +          +K        KL    +  
Sbjct: 148 AVRFSLPDWLWEGLAATHGEQAEALAATLLLPAAIEIRSNLLKGKATALQKKLAEAGVAA 207

Query: 201 GGIRLKELPESIV------SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
             +        +        LP F  G + +QDA +    +         V+D CA  GG
Sbjct: 208 ETVPEAPAALRVTGRPALIRLPLFENGWFELQDAGSQAIAECGAARRGERVIDFCAGAGG 267

Query: 255 KT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM----DAFDYCPKKLF 307
           KT   A  + +  +V A D  + RL +L   L R  +     + +    DA     +   
Sbjct: 268 KTLALAARMRNQGQVLAFDTDEARLSRLGPRLKRAGVDIVTQMRLKDSLDARLARYQGWA 327

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VLVDAPCS +GT+RRHPD+ W     ++      QR+++      ++PGG +V++ CS
Sbjct: 328 DLVLVDAPCSGSGTLRRHPDLKWRLQPQEVAHYRQLQRQIMAAAARLLRPGGRLVYATCS 387

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS---------------PEGW 412
           L   ++E  +  +   +     +     A   +   A                       
Sbjct: 388 LLADENEAQMAWLAHKAGGVSAVGGAAGAAGAAERAADPTGSGGAVGAGGVQATDPAWPA 447

Query: 413 IRITPDMLEKIDGVSSGMDGFFAV 436
           + + P           G D FF  
Sbjct: 448 VSLQPVAQRYWLPQPEGGDVFFMA 471


>gi|291529390|emb|CBK94976.1| tRNA and rRNA cytosine-C5-methylases [Eubacterium rectale M104/1]
          Length = 462

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 117/296 (39%), Gaps = 36/296 (12%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209
           EW          + + L  +   +      + +   ++T     +  +         +  
Sbjct: 18  EWDDFLYSYDNNRFQALRFNTLKVQSPEERMRI---LKTLKISSDKKVSWANEAYYFDEN 74

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKV 266
                 P    G++++Q+ SA     L      + VLDLCAAPGGK+ QL         +
Sbjct: 75  VRPGKHPYHEMGLYYIQEPSAMSAAALLAPKPGMRVLDLCAAPGGKSTQLATYLGDSGLL 134

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRR 324
            + +++ +R   L  N++R+ +    +   D+F         F+A+ VDAPCS  G  R+
Sbjct: 135 VSNEINTQRSRILSQNIERMGIKNAIVTNEDSFVLASHFPGFFNAIQVDAPCSGEGMFRK 194

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P+ +     +++   A  Q+++L      +KPGG++V+S C+  K+++E+V++  L   
Sbjct: 195 LPEAIEQWSMENVAICAARQKEILDNAAVMLKPGGVIVYSTCTFSKEENEDVIECFLERH 254

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           P                      + E   R  P  ++          G F   L R
Sbjct: 255 PD--------------------FTLEEMERFWPHKVDGE--------GHFVAKLVR 282


>gi|284161697|ref|YP_003400320.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
           5631]
 gi|284011694|gb|ADB57647.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
           5631]
          Length = 305

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 123/301 (40%), Gaps = 23/301 (7%)

Query: 157 ENFYGKERVLAISDACISPLYIDLTV----KFDIETWAHKLNAVMLPTGGIRLKELPESI 212
                      +  A        +        D+ +       +             + +
Sbjct: 16  YERIDDSEEFWMYMAKPLRPSFRVNTLKASVEDVVSSLSDRFKLEPIPWCKEGFFSDKEV 75

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
                   GV + Q+AS+ IP  +     N+ VLD+CA+PGGKT Q    + +   + A 
Sbjct: 76  GRTIEHQIGVIFSQEASSMIPAIVLDPKPNMLVLDMCASPGGKTTQIAQYMKNEGCIVAN 135

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
           DV   R+  L  NL R  +    +   D  F    K  FD VL+DAPCS+ G IR++   
Sbjct: 136 DVKYDRINILISNLQRCGVTIARVTMKDGRFFKRFKDTFDRVLIDAPCSNVGMIRKNYRY 195

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           L      ++   +  Q++L++ G   +KP GI+V+S C+LD  ++EEVV  +L ++   +
Sbjct: 196 LKMWSLKEVYSLSRLQKELVMAGYRALKPNGIMVYSTCTLDPLENEEVVDYLLSNTDAKL 255

Query: 389 ELV--PLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
             +  P+N     +         E    +RI P          +  +GFF     ++ +P
Sbjct: 256 LEIDLPVNRTEPITEFEGKVYDEEVKKCLRIHPQD--------NDTEGFFIA---KITKP 304

Query: 445 K 445
           +
Sbjct: 305 E 305


>gi|238912085|ref|ZP_04655922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 513

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|322616846|gb|EFY13754.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618085|gb|EFY14977.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625756|gb|EFY22575.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626206|gb|EFY23016.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633812|gb|EFY30552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322638966|gb|EFY35659.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640784|gb|EFY37434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644171|gb|EFY40716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322655402|gb|EFY51710.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660842|gb|EFY57073.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662861|gb|EFY59068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668045|gb|EFY64204.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674193|gb|EFY70287.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675452|gb|EFY71526.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322683133|gb|EFY79149.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686827|gb|EFY82805.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323195281|gb|EFZ80461.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199174|gb|EFZ84269.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203806|gb|EFZ88825.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207430|gb|EFZ92378.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323217413|gb|EGA02132.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220550|gb|EGA05001.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224660|gb|EGA08933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231436|gb|EGA15549.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235876|gb|EGA19955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240445|gb|EGA24488.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245338|gb|EGA29338.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246705|gb|EGA30677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253560|gb|EGA37388.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323266811|gb|EGA50297.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269017|gb|EGA52473.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 513

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDNAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|167039631|ref|YP_001662616.1| NOL1/NOP2/sun family RNA methylase [Thermoanaerobacter sp. X514]
 gi|307725043|ref|YP_003904794.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter sp. X513]
 gi|166853871|gb|ABY92280.1| putative RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter
           sp. X514]
 gi|307582104|gb|ADN55503.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter sp. X513]
          Length = 460

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 16/256 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E   +      G++++Q+ +A   V++        +LD+ AAPGGKT 
Sbjct: 60  PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPRPGEKILDVSAAPGGKTT 119

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
                I     + A ++ K+R++ L  N++R+ +    I     +      +  FD +LV
Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLATAFEGYFDKILV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        ++++  +  Q+ +L   +S +KPGGI+V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVMSCSITQKNILRNVVSLLKPGGILVYSTCTFSPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSG 429
           +E V++  L   P         S ++          PE     +R+ P  +         
Sbjct: 240 NEGVIKNFLEEYPEFEVEESEMSKFFDRGHPEWVEGPEDLKKCMRLWPHKVRGE------ 293

Query: 430 MDGFFAVALRRLIQPK 445
             G F   LR+  + +
Sbjct: 294 --GHFIAKLRKKEEEE 307


>gi|168241450|ref|ZP_02666382.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|198244837|ref|YP_002215291.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205352487|ref|YP_002226288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856644|ref|YP_002243295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|226725342|sp|B5FTI4|RSMF_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|226725343|sp|B5R2S1|RSMF_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|226725344|sp|B5R8V2|RSMF_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|257096811|sp|B4TKI0|RSMF_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|197939353|gb|ACH76686.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205272268|emb|CAR37145.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205339225|gb|EDZ25989.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|206708447|emb|CAR32768.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326623036|gb|EGE29381.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 479

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLNSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++EEV   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|289826537|ref|ZP_06545617.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 510

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|205358008|ref|ZP_02574896.2| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205328183|gb|EDZ14947.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|312912840|dbj|BAJ36814.1| 16S rRNA methyltransferase F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323130126|gb|ADX17556.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 513

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|257096813|sp|A9MV57|RSMF_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 479

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|37677324|ref|NP_937720.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus YJ016]
 gi|37201870|dbj|BAC97690.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus YJ016]
          Length = 415

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 141/441 (31%), Gaps = 64/441 (14%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V+ +   L       + +     L   +Q  +  +    LR L     + D    +
Sbjct: 28  ILDLVLNEGSPLDRAYSRHFSE---LNLISAEQARITMVTGDLLRRLNLYCFLADIDASN 84

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                    ++ +R+         +  +      +   K +        L  + +     
Sbjct: 85  -------ISRESMRL---------IHIWHKFH-GLALPKTNYAEAIEDDLFQAKMEEAKA 127

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
           +          + ++ E     L                   L     +K D +  A +L
Sbjct: 128 QPALWDGCPEWLDVLGERELGELWAAERSALAKPAKRYLRVNL-----LKCDRDDLAKRL 182

Query: 194 NAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
           N   + T                ++     FA+G +  QDA +            + V+D
Sbjct: 183 NKEGVSTVPVEGVESALEVTSNSALFKTQSFADGWFEQQDAGSQKVAAALDVKPGMRVID 242

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYC 302
            CA  GGKT     ++    ++ A+DV + +L  L+    R   +  +            
Sbjct: 243 ACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAGAHNVETRLITSSKTIKR 302

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            K   D VL+D PCS  G ++R+PD  W    + +      Q  +L      VK GG++V
Sbjct: 303 LKLSADRVLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILASYSRMVKVGGMLV 362

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS+   ++   V   L ++P    +   N                            
Sbjct: 363 YATCSIMPCENRGQVDAFLAANPHFRLIDDEN---------------------------- 394

Query: 423 IDGVSSGMDGFFAVALRRLIQ 443
           I   +SG DGF+   L R+ +
Sbjct: 395 ITPANSGFDGFYLARLERIAE 415


>gi|320528347|ref|ZP_08029509.1| NOL1/NOP2/sun family protein [Solobacterium moorei F0204]
 gi|320131261|gb|EFW23829.1| NOL1/NOP2/sun family protein [Solobacterium moorei F0204]
          Length = 438

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 16/234 (6%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTA 268
           +   P    G +++Q+ SAS  V +      + VLD+CAAPG K+ Q+         + A
Sbjct: 70  VGFTPEHMSGFFYIQEPSASSAVTILEPKPGMKVLDMCAAPGSKSTQISELLHQCGLLVA 129

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326
            ++   R   L  N++R       ++  D  D        FD VL DAPCS  G  R+  
Sbjct: 130 NEIHPTRARVLLENVERCGSANTIVLNNDPKDISKAFPEFFDMVLCDAPCSGEGMFRKED 189

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             +     +++   A  Q  +L +    +KPGGI+V+S C+   +++E  +QK ++   +
Sbjct: 190 QAVEQWSLENVQACAVRQIAILNEAYKCLKPGGIMVYSTCTFAMEENELCIQKFIQEH-L 248

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + LVP+N  + +     +    +   RI P           G +G F   L++
Sbjct: 249 DMHLVPINVEFGRKA-FDLGSHTDYARRIFP---------MDGGEGHFIAKLKK 292


>gi|114766380|ref|ZP_01445362.1| possible NOL1/NOP2/sun family protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114541413|gb|EAU44460.1| possible NOL1/NOP2/sun family protein [Roseovarius sp. HTCC2601]
          Length = 384

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 128/449 (28%), Gaps = 80/449 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR   ++ +L  +          L      S F     +D+  VR  V   +R 
Sbjct: 1   MTP--AARVQAAAEVLDRI-AAGTPAEQALLGWSRASRFAG--SKDRAAVRDHVFDVMRR 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                              +  +  LLR            D   +      A +   +  
Sbjct: 56  WR------STAASGGGESGRARMLGLLR--------QQGTDPDTLFTGQGHAPKPLGDAE 101

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI- 178
            A                 +   A    +P+W     +   G E                
Sbjct: 102 RAA--------------GRVPEGAEALDLPDWLWSDWQASLGAEAAATAEQLRHRAPVFL 147

Query: 179 ---DLTVKFDIETWAHKLNAVMLPTGGI-----RLKELPESIVSLPGFAEGVWWVQDASA 230
               L         A   + +      +      + E    +     F +G+  +QDA++
Sbjct: 148 RINTLRATQAAAIAALSADGIATRPAPLADTALEVIEGARKVARSKAFTDGLVELQDAAS 207

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              V          VLD CA  GGK  A        V A D +  R+  L     R    
Sbjct: 208 QAVVAALPLAPGQRVLDYCAGGGGKALAMASRLSGLVEAHDANPARMSDLPARAIRAGAE 267

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                E       P+  +D VL D PCS +G+ RR P+  W    D + +    Q ++L 
Sbjct: 268 IAITQE-------PRGPYDLVLCDVPCSGSGSWRRAPEGKWRLTADGLAELTAIQGRILD 320

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                V  GG + ++ CS+   ++   V   L   P                    +L+ 
Sbjct: 321 TVAPLVARGGTLAYATCSMLATENGARVAAFLAGHP------------------GWSLAR 362

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           E   +  P         S G DGF+   L
Sbjct: 363 E--RQFLP---------SDGGDGFYVACL 380


>gi|16765191|ref|NP_460806.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|81522670|sp|Q8ZNZ2|RSMF_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|16420383|gb|AAL20765.1| putative rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261247032|emb|CBG24849.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993815|gb|ACY88700.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158374|emb|CBW17873.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321224484|gb|EFX49547.1| Ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|332988737|gb|AEF07720.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 479

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|296101829|ref|YP_003611975.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056288|gb|ADF61026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 480

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 125/264 (47%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +  +L  V     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YHWQLTPVPWCEEGFWIEREDEASLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPE 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMANRGAILANEFSASRVKVLHANISRCGIQNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+L+      ++PG
Sbjct: 180 FGAALPEAFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIASTQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++ ++EEV   +    P  VE +PLN  +  + D   A++PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRDENEEVCLWLKAQYPDAVEFLPLNDLFASAED---AITPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 297 IYDCE--------GFFVARLRKTA 312


>gi|204931095|ref|ZP_03221921.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204320139|gb|EDZ05344.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 513

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|194734489|ref|YP_002114882.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194709991|gb|ACF89212.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
          Length = 513

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 331 IYDCE--------GFFVARLRKM 345


>gi|325566947|ref|ZP_08143725.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325159119|gb|EGC71264.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 510

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 13/226 (5%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I   +        VLDLCAAPGGKT Q    +     + A ++  +
Sbjct: 131 HQAGYVYSQEPSAMIVATIAAAQPGERVLDLCAAPGGKTTQLASQLQGKGLLVANEIFPK 190

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R       +      +      + FD ++VDAPCS  G  R+ P  L   
Sbjct: 191 RAKILSENVERWGFPNVVVTNQAPQELSRHFPQFFDKIVVDAPCSGEGMFRKDPVALEEW 250

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +   + A  Q+ +L Q ++ +KPGG +++S C+   +++E ++  ++   P  +E + 
Sbjct: 251 QAETPDQCAIRQKDILAQAVAMLKPGGQLIYSTCTFAPEENEAMMAWLMEEYPFTIEAID 310

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L +      +   A   E  IR+ P + +          G FA  L
Sbjct: 311 LANVSHGRSEWGAASGIEKTIRLWPHLNQGE--------GHFAAKL 348


>gi|295104774|emb|CBL02318.1| tRNA and rRNA cytosine-C5-methylases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 512

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 122/310 (39%), Gaps = 14/310 (4%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHK----LNAVMLPT 200
           +P  + E+ E     +R   +  A        +TV   +   E +A +    L       
Sbjct: 1   MPTEYFEQRERALLGQRYEQLYAAPQQTAERGVTVSALRTTPEQFAQRADFPLEPSPFCK 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
               + +        P    GV++ Q+ SAS    L G    + VLDLCAAPGGK++QL 
Sbjct: 61  AAFVVHQPDFKPGRHPYHHAGVFYSQEPSASSAAPLLGVQPGMRVLDLCAAPGGKSSQLA 120

Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
                   + + +    R E L+ NL+R+ +    ++              FD VLVDAP
Sbjct: 121 AALQGRGVLVSNEYVAARAEILKSNLERMGVSNAVVLNETPARIAEALPEFFDRVLVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P  L       + + A    ++L    + + PGG +V+S C+   ++ E 
Sbjct: 181 CSGEGMFRKEPVALQQHCEALVKQCAELGAQILDCAAAALAPGGQLVYSTCTFAPEEDEG 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            V   L+  P    L  +      +   A   +  G + +    + +I     G +G F 
Sbjct: 241 QVAAFLQRHP-EFVLADVLGNVDYTFGSAGEENRTGGLPLDVSKVRRIWPCQGG-EGHFM 298

Query: 436 VALRRLIQPK 445
             L +   P+
Sbjct: 299 ARLVKAGTPR 308


>gi|27367523|ref|NP_763050.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus CMCP6]
 gi|27359095|gb|AAO08040.1|AE016812_22 tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus CMCP6]
          Length = 404

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 141/441 (31%), Gaps = 64/441 (14%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +L  V+ +   L       + +     L   +Q  +  +    LR L     + D    +
Sbjct: 17  ILDLVLNEGSPLDRAYSRHFSE---LNLISAEQARITMVTGDLLRRLNLYCFLADIDASN 73

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                    ++ +R+         +  +      +   K +        L  + +     
Sbjct: 74  -------ISRESMRL---------IHIWHKFH-GLALPKTNYAEAIEDDLFQAKMEEAKA 116

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
           +          + ++ E     L                   L     +K D +  A +L
Sbjct: 117 QPALWDGCPEWLDVLGERELGELWAAERSALAKPAKRYLRVNL-----LKCDRDDLAKRL 171

Query: 194 NAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
           N   + T                ++     FA+G +  QDA +            + V+D
Sbjct: 172 NKEGVSTVPVDGVESALEVTSNSALFKTQSFADGWFEQQDAGSQKVAAALEVKPGMRVID 231

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYC 302
            CA  GGKT     ++    ++ A+DV + +L  L+    R   +  +            
Sbjct: 232 ACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAGAHNVETRLITSSKTIKR 291

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            K   D VL+D PCS  G ++R+PD  W    + +      Q  +L      VK GG++V
Sbjct: 292 LKLSADRVLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILASYSRMVKVGGMLV 351

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS+   ++   V   L ++P    +   N                            
Sbjct: 352 YATCSIMPCENRGQVDAFLAANPHFRLIDDEN---------------------------- 383

Query: 423 IDGVSSGMDGFFAVALRRLIQ 443
           I   +SG DGF+   L R+ +
Sbjct: 384 ITPANSGFDGFYLARLERIAE 404


>gi|163731783|ref|ZP_02139230.1| NOL1/NOP2/sun family protein, putative [Roseobacter litoralis Och
           149]
 gi|161395237|gb|EDQ19559.1| NOL1/NOP2/sun family protein, putative [Roseobacter litoralis Och
           149]
          Length = 386

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 137/436 (31%), Gaps = 74/436 (16%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           L  V  +  +    L      S F     +D+  VR  V   LR    + A+   V    
Sbjct: 14  LDAV-SQGRAAEQALTRWARQSRFAG--SKDRAAVRDHVFDVLRLKDTVAALGGGVSGR- 69

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
                      L + +  + Y  +      +                      L    + 
Sbjct: 70  ----------ALMLGL--LRYNGLDPSEFFN--------------AQGYAPDPLSDEEQS 103

Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK-FDIETWAHK 192
           +         +  +PEW     E   G E     +         + + +K  D+ T    
Sbjct: 104 RGTDRDTACALWNLPEWLVPEFERSLGAEAGAVAAALTHRGPVSLRVNLKEADVATAMQN 163

Query: 193 LNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           L +  + T    + +           + +   +  G   +QDA++   +        L+ 
Sbjct: 164 LQSDGVVTTANPVAQTALTVIEGARRVRNTTAYLTGQVELQDAASQAVIDALP--QALTC 221

Query: 246 LDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           LD CA  GGK  A       +V A D    R+  L    +R       I E+        
Sbjct: 222 LDYCAGGGGKALAMAAQPNRRVYAHDSDPARMRDLSPRAERAG---VGIQELSTDQLRTH 278

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             FD VL DAPCS +G  RR P+  W+     + +    Q+ +L Q    +   G ++++
Sbjct: 279 MPFDLVLCDAPCSGSGAWRRSPEAKWSFTAARLEELQAIQQDILQQAAVLLSENGWLIYA 338

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CS+ K ++E+ V+  L  +P                                   ++  
Sbjct: 339 TCSVLKAENEDQVETFLSRNPD-----------------------------WQCRYQRRW 369

Query: 425 GVSSGMDGFFAVALRR 440
            +S   DGF+   L R
Sbjct: 370 PLSENCDGFYTAHLTR 385


>gi|168238457|ref|ZP_02663515.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|257096814|sp|B4TY18|RSMF_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|197288700|gb|EDY28075.1| ribosomal RNA small subunit methyltransferase F [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 479

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 60  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           + +          GFF   LR++
Sbjct: 297 IYDCE--------GFFVARLRKM 311


>gi|209767734|gb|ACI82179.1| putative rRNA methylase [Escherichia coli]
          Length = 481

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 182 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 242 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLNVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|57642057|ref|YP_184535.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
           [Thermococcus kodakarensis KOD1]
 gi|57160381|dbj|BAD86311.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing
           RNA-binding PUA domain [Thermococcus kodakarensis KOD1]
          Length = 383

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
           S+  L  F EG+++ Q   + +  ++        ++D+ AAPGGKT+ +   + +  ++ 
Sbjct: 168 SLSELESFKEGLFYAQSLPSMVASRVLEPSEEDLIIDMAAAPGGKTSHIAQLMQNRGEII 227

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D S+ RL K+   L RL +    +I MDA          D +L+DAPC++ G     P
Sbjct: 228 AIDKSRNRLRKMEEELKRLGVKNVRLIHMDARKLPELGIEADKILLDAPCTALGI---RP 284

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +  TR   DI  +A +QR  +   I  ++ GG +V+S C++  +++E  V+ +L+    
Sbjct: 285 KLWETRTPKDIEATARYQRAFIWAAIKSLRKGGTLVYSTCTISYEENEANVKYMLQK--- 341

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L          +  +  EG  R  P+             GFF   LR++
Sbjct: 342 -----GLKLEEQSVFIASHGIDMEGVQRFYPN--------RHLTQGFFIAKLRKV 383


>gi|288549761|ref|ZP_05968079.2| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF)
           [Enterobacter cancerogenus ATCC 35316]
 gi|288317737|gb|EFC56675.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF)
           [Enterobacter cancerogenus ATCC 35316]
          Length = 487

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243
           +  +L  V     G  ++   E    + S      G++++Q+AS+ +PV       N   
Sbjct: 67  YRWQLTPVPWCEEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNLPA 126

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  ++   +   D   
Sbjct: 127 RVMDVAAAPGSKTTQIAARMGNQGAILANEFSASRVKVLHANISRCGIHNVALTHFDGRV 186

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+L+      ++PG
Sbjct: 187 FGAALPETFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIDSAFHALRPG 246

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++ ++E+V   +    P  VE +PL+  +  + + A   +PEG++ + P 
Sbjct: 247 GTLVYSTCTLNRDENEDVCLWLKAQYPDAVEFLPLDDLFNAAKESA---TPEGFLHVFPQ 303

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 304 IYDCE--------GFFVARLRK 317


>gi|157145396|ref|YP_001452715.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter koseri
           ATCC BAA-895]
 gi|167012766|sp|A8AFL6|RSMF_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|157082601|gb|ABV12279.1| hypothetical protein CKO_01138 [Citrobacter koseri ATCC BAA-895]
          Length = 479

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTL--NNL 243
           +   L  V     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWSLTPVPWCEEGFWIERDDEESLPLGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPE 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            ++D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RIMDVAAAPGSKTTQIAARMNNQGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+L+      ++PG
Sbjct: 180 FGAALPETFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTCTLNREENESVCLWLKETYPEAVEFLPLGDLFP---GAERALTAEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 297 IYDCE--------GFFVARLRKTA 312


>gi|222623587|gb|EEE57719.1| hypothetical protein OsJ_08204 [Oryza sativa Japonica Group]
          Length = 713

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 123/338 (36%), Gaps = 46/338 (13%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201
                ++  E     +   +++ + ++        L            A  L        
Sbjct: 229 YYGYNDFLVEAFIEIFPAVKLVELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 288

Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I        +         +   +  G +  Q AS+ +PV          ++D+ AAPG
Sbjct: 289 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 348

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307
           GKT  +   + +   + A + +++RL  L  N+ R+ +    +   D  +          
Sbjct: 349 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 408

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG-------------ISF 354
           D VL+DAPC+ TGTI + P +  ++  +DI   A  Q+  L +              +  
Sbjct: 409 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKFFLNRAVILYWLSTSITLKLQL 468

Query: 355 V-----------KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           +           K GG +V+S CSL   ++E VV   L+     V+LVP    + +    
Sbjct: 469 LLAAIDLVDANSKTGGYIVYSTCSLMIPENEAVVDYALKKR--NVKLVPCGLDFGRP--- 523

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 E     + D   +     + MDGFF   L++L
Sbjct: 524 GFIRFREHRFHTSLDKTRRFYPHVNNMDGFFVAKLKKL 561


>gi|317048471|ref|YP_004116119.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. At-9b]
 gi|316950088|gb|ADU69563.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. At-9b]
          Length = 472

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN-- 242
             +  +L  +     G  +    E   + S+     G++++Q+AS+ +PV          
Sbjct: 55  ADYGWRLTPIPWCAEGFWIDRDDESLPLGSVAEHLSGLFYIQEASSMLPVAALFDAAPDA 114

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             V+D+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  +    +   D  
Sbjct: 115 HQVMDVAAAPGSKTTQIAALMHNQGAILANEYSASRVKVLHANISRCGVSNVALTHFDGR 174

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +       FDA+L+DAPCS  G +R+ PD L         + A  QR L+      ++P
Sbjct: 175 VFGAALPEQFDAILLDAPCSGEGVVRKDPDALRNWTLASTEEIAATQRDLIDSAFHALQP 234

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +++S C+L++ ++++V+  + +  P  VE++ L   +        AL+PEG++ + P
Sbjct: 235 GGTLIYSTCTLNQIENQQVISWLQQRYPGTVEILSLAGLFE---GAEQALTPEGYLHVFP 291

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   LR+  
Sbjct: 292 HIFDSE--------GFFVARLRKTA 308


>gi|323143378|ref|ZP_08078065.1| putative ribosomal RNA small subunit methyltransferase B
           [Succinatimonas hippei YIT 12066]
 gi|322416844|gb|EFY07491.1| putative ribosomal RNA small subunit methyltransferase B
           [Succinatimonas hippei YIT 12066]
          Length = 452

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 154/440 (35%), Gaps = 64/440 (14%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +LS V+     L       +     + L   +Q  +   +N   R L      +   L  
Sbjct: 66  ILSSVLVDGKPLDKAYAYWFAKVKIQAL---EQGFLIKQINAMFRRLSF--YAIVCCLKR 120

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                   +  L+    A+    +     +     ++A               +  R+  
Sbjct: 121 P-SDLSRHINWLILAYCAE---QEWPLPDIDAEGFDRA--------------GLKERIKI 162

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193
            K + L        + E   + L + + +ER     +         L      E   H L
Sbjct: 163 AKEDELLNEGCPVWLNELCTKELSDKWPQERKALAKEPSRYIRANALK--TTRENLGHVL 220

Query: 194 NAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
           +   + T  ++            ++     F EG++  QDA + +          + V+D
Sbjct: 221 SEEGVVTRPVKGVYSALEVTSNAALFRTAAFKEGLFEQQDAGSQLIPPFLDAQPGMRVID 280

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
            CA  GGKT Q   ++ +   + ALD    +L+ L+    R   +  +   +D+     +
Sbjct: 281 ACAGSGGKTLQLAAIMENKGVIIALDTEGWKLDDLKKRSRRAGAFNIETRVIDSTKVIKR 340

Query: 305 --KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                D VL+DAPCS  G +RR PD  W      I++    Q+ +L +    VK GGIVV
Sbjct: 341 LYDHADRVLIDAPCSGLGVLRRTPDSKWRDLRPRIIELKKIQQDILSRYSQMVKVGGIVV 400

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S CS+   ++E  V++ + +S    EL+   +                   + P     
Sbjct: 401 YSTCSILPSENELQVKEFIANSNGAFELLEDKT-------------------LYP----- 436

Query: 423 IDGVSSGMDGFFAVALRRLI 442
               S G DGF+   + R  
Sbjct: 437 ----SEGFDGFYMAKIIRKA 452


>gi|254585637|ref|XP_002498386.1| ZYRO0G08998p [Zygosaccharomyces rouxii]
 gi|238941280|emb|CAR29453.1| ZYRO0G08998p [Zygosaccharomyces rouxii]
          Length = 683

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 123/344 (35%), Gaps = 49/344 (14%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
             +   +  +  +         +       ++L    +   W   +   ++       K 
Sbjct: 72  HAQEVLDLFQQRHLANLTGIEFEGEPVKPPVELPWYPNHLAWQIDVPKSVIRKNPQFAKM 131

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV- 266
               +V     A G    Q+A + IP  L     + +VLD+CAAPG KTAQ+I    +  
Sbjct: 132 QRFLVVEN---AVGNISRQEAVSMIPPTLLDVQPHHTVLDMCAAPGSKTAQMIEYLHRDN 188

Query: 267 -------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLF 307
                   A D   +R   L   L RL+     ++  DA  +                 F
Sbjct: 189 DEPSGFVVANDADAKRSHMLVHQLKRLNSANLIVVNHDAQFFPRVKAHPDHTNKKDILRF 248

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VL D PCS  GT+R++ +V     T + +     Q  +L +G+  +K GG +V+S CS
Sbjct: 249 DRVLCDVPCSGDGTMRKNVNVWRDWTTQNGLALHNVQLNILNRGLHLLKSGGRLVYSTCS 308

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-------------------------- 401
           ++  ++E VV + LR     V LV  +      +                          
Sbjct: 309 MNPIENEAVVAEALRKWGGKVRLVDCSDKLPGLVRSNGINQWPVLNRNMETKEKGEDGTN 368

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           D     + E   R   D   ++        GFF   L ++ +P+
Sbjct: 369 DSWFPPTDEEAARFHLDYCVRVYPHQQNTGGFFITVLEKVEEPE 412


>gi|15668197|ref|NP_246989.1| proliferating cell nuclear antigen [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500953|sp|Q60343|TRM4_METJA RecName: Full=tRNA (cytosine-5-)-methyltransferase Trm4; AltName:
           Full=aTrm4
 gi|299856663|pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
           Sinefungin
 gi|299856664|pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
           Sinefungin
 gi|299856676|pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
 gi|1592257|gb|AAB98007.1| proliferating-cell nucleolar antigen, FMU/NOL1/NOP2 family
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 274

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 25/249 (10%)

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
               +K+ P SI S P +  G +  Q  S+ IP  +     +  +LD+CAAPGGKT  L 
Sbjct: 43  YAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLA 102

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLV 312
             + +   + A+++SK R + L+ N++R+ +    II  D   Y       +  FD +L+
Sbjct: 103 QLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL 162

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS      ++ +V      +DI   +  Q++L+  GI  +K  G +V+S CS++ ++
Sbjct: 163 DAPCSGNIIKDKNRNV----SEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEE 218

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +EEV++ +L+     VEL+ + +  +K I++       G +R+ P               
Sbjct: 219 NEEVIKYILQKR-NDVELIIIKANEFKGINIKEGYIK-GTLRVFPPNEP----------- 265

Query: 433 FFAVALRRL 441
           FF   LR++
Sbjct: 266 FFIAKLRKI 274


>gi|258508496|ref|YP_003171247.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus GG]
 gi|257148423|emb|CAR87396.1| tRNA and rRNA cytosine-C5-methylases [Lactobacillus rhamnosus GG]
 gi|259649806|dbj|BAI41968.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
          Length = 443

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 15/226 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277
           G+ + Q+ SA     +        VLDLCAAPGGK+ QL         + + +++  R +
Sbjct: 73  GLVYSQEPSAQFVGTVAAPQKGERVLDLCAAPGGKSTQLASYLGETGLLVSNEINGPRSK 132

Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +   D         + FD +LVDAPCS  G  R+ PD +     D
Sbjct: 133 VLSGNLERWGSRNILVTNNDPDTLAAAWPQTFDRILVDAPCSGEGMFRKDPDAIQYWHRD 192

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  Q  +L   I  ++PGG +++S C+   ++ E+++  +L    + +E +  + 
Sbjct: 193 YPAECAARQEVILQAAIKMLRPGGSLIYSTCTFSPEEDEQIIAWLLAHYDLTLEPIKKSP 252

Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                       +PE    +R+ P ++           G F   LR
Sbjct: 253 GMVAGRPEWADGNPELAKTVRLFPHLVRGE--------GHFVAKLR 290


>gi|199598407|ref|ZP_03211826.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
 gi|199590726|gb|EDY98813.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
          Length = 443

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 15/226 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277
           G+ + Q+ SA     +        VLDLCAAPGGK+ QL         + + +++  R +
Sbjct: 73  GLVYSQEPSAQFVGTVAAPQKGERVLDLCAAPGGKSTQLASYLGETGLLVSNEINGPRSK 132

Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +   D         + FD +LVDAPCS  G  R+ PD +     D
Sbjct: 133 VLSGNLERWGSRNILVTNNDPDTLAAAWPQTFDRILVDAPCSGEGMFRKDPDAIQYWHRD 192

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  Q  +L   I  ++PGG +++S C+   ++ E+++  +L    + +E +  + 
Sbjct: 193 YPAECAARQEVILQAAIKMLRPGGSLIYSTCTFSPEEDEQIIAWLLAHYDLTLEPIKKSP 252

Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                       +PE    +R+ P ++           G F   LR
Sbjct: 253 GMVAGRPEWADGNPELAKTVRLFPHLVRGE--------GHFVAKLR 290


>gi|189403504|ref|ZP_03007106.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4486]
 gi|217328807|ref|ZP_03444888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. TW14588]
 gi|189360318|gb|EDU78737.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4486]
 gi|217318154|gb|EEC26581.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. TW14588]
 gi|326343764|gb|EGD67526.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. 1125]
          Length = 514

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 95  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 154

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 155 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 214

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 215 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 274

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 275 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 331

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 332 IYDCE--------GFFVARLRK 345


>gi|300309418|ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300072203|gb|ADJ61602.1| RNA methyltransferase (SUN protein) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 424

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 108/447 (24%), Positives = 170/447 (38%), Gaps = 71/447 (15%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
             +L   L   +  S     +   +  ++ +    +R L   +++L  +           
Sbjct: 18  GHALPQALAQIFSRSDAPAPA---RGAIQDLSYRAMRSLGLTESLLGLLANKPPQP---- 70

Query: 82  LQQLLRVSVAQILY---------------LDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
                     ++L+                    + VVD AV+ A    E      +VN+
Sbjct: 71  ----------EVLHGLLVTALALLVNEEESGYDSFTVVDQAVQAAAISPEMSFAKGVVNA 120

Query: 127 ILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           ILRR     +    +  +   G    P W+ +RL+  Y  E+  AI  A      + L V
Sbjct: 121 ILRRLLRERATLMPQATKTPPGTWNYPTWWIDRLKAAYP-EQWQAILHAGNQAPPLTLRV 179

Query: 183 KFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                T A  L        A             P  +  LPGFAEGV  VQDA+A +   
Sbjct: 180 NRRRTTVAQYLDTLQQAGMAARQVGPAAVRLHRPVPVQQLPGFAEGVVSVQDAAAQLAAP 239

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYA-EDI 293
           L    + + VLD CAAPGGKT  L+        ALD   RRL+++  NLDRL L A    
Sbjct: 240 LLDVADGMRVLDACAAPGGKTGHLLELADLDLQALDHDTRRLQRIAENLDRLQLKARLTT 299

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            +  A D+   + FD +L D PC+++G +RRHPD+ W R   D  + A    ++L +   
Sbjct: 300 GDARADDWWDGQPFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQ 359

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++P G ++   CSL  Q+SE+      +         P                     
Sbjct: 360 MLRPDGKLLLVTCSLWPQESEQQAVAFAQKHNAIRLPAPG-------------------- 399

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++ P         ++  DG F    ++
Sbjct: 400 QLLP-----TASETADHDGLFYALFQK 421


>gi|160915657|ref|ZP_02077865.1| hypothetical protein EUBDOL_01664 [Eubacterium dolichum DSM 3991]
 gi|158432133|gb|EDP10422.1| hypothetical protein EUBDOL_01664 [Eubacterium dolichum DSM 3991]
          Length = 444

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 15/261 (5%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E     L    +      +++   S+ +    A G++++Q+ SAS  V++ G      VL
Sbjct: 46  EEKLCTLKPSAICNKAYYIQDEESSLGNHAAHAAGLFYMQEPSASSAVEILGVEKGDWVL 105

Query: 247 DLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           DLCAAPGGKT Q+         + A ++  +R + L  N++RL  Y   I   +  D   
Sbjct: 106 DLCAAPGGKTTQIADALAHTGFLVANEIDPKRAQVLLSNMERLGFYECMITNANPKDLTK 165

Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD VLVDAPCS  G  R+H   +     + +   A  Q+ +L      +K  GI+
Sbjct: 166 AMKGCFDKVLVDAPCSGEGMFRKHSKAMEDWSVEHVKACAQRQKHILENAYEALKESGIL 225

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C+   +++EEV+   +   P  +EL+    ++ +       L  E  +RI P    
Sbjct: 226 VYSTCTYAMEENEEVIADFMEKHP-DMELLDPCVSFGRCGFPYKDLDSEKLVRILP---- 280

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
                    +G F   LR+  
Sbjct: 281 -----MDKGEGHFVAKLRKRA 296


>gi|188025255|ref|ZP_02997418.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4113]
 gi|189406265|ref|ZP_02827395.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC508]
 gi|208810551|ref|ZP_03252427.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4206]
 gi|188013980|gb|EDU52102.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4113]
 gi|189375610|gb|EDU94026.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC508]
 gi|208725067|gb|EDZ74774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. EC4206]
 gi|326342214|gb|EGD65995.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O157:H7 str. 1044]
          Length = 506

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 87  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 146

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 147 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 206

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 207 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 266

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 267 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 323

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 324 IYDCE--------GFFVARLRK 337


>gi|163859032|ref|YP_001633330.1| hypothetical protein Bpet4711 [Bordetella petrii DSM 12804]
 gi|163262760|emb|CAP45063.1| conserved hypothetical protein [Bordetella petrii]
          Length = 452

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 106/456 (23%), Positives = 166/456 (36%), Gaps = 72/456 (15%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL----P 76
              SLT  L           ++   +   +A+    +R L    A+   ++  S      
Sbjct: 35  DGRSLTDAL---------AGVAPALRPATQAVSFHAMRQLGWAAAIGRRLVQRSPGALFD 85

Query: 77  RKKYSLQQLLR-------------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
                   LLR             + V        A + VV+ AV  A   +    +  L
Sbjct: 86  ALLQVSLSLLRAPQGEDASAVPAGMPVY-------APHTVVNQAVTAAAGQRALAAYKGL 138

Query: 124 VNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +N+ LRR  RE+  L   +A         P W+ ++L   Y  ++  AI  A   P  + 
Sbjct: 139 LNASLRRFLRERAALEAAVAKLPEARWNHPAWWVDQLGAAYP-DQWQAILAAANVPPPLT 197

Query: 180 LTVKFDI---ETWAHKLNAVMLPTGGIR----LKELPESIVSLPGFAEGVWWVQDASASI 232
           L V       E     L A  + +  +     +      +  LPGFA G W VQDA+A +
Sbjct: 198 LRVNTRRASVEQVRQALQADGIASEPVGAAGLVLAEARPVAQLPGFAAGWWSVQDAAAQL 257

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE-KLRCNLDRLHLYAE 291
              L    +   VLD CAAPGGKTA L+           +      ++  NLDRL L ++
Sbjct: 258 AAPLLAPRDGQRVLDACAAPGGKTAHLLELANLDLLALDADAARLARVEQNLDRLGLRSD 317

Query: 292 DIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +    A           + FDAVL D PC+++G +RRHPD+ W R   D+ ++A  Q +
Sbjct: 318 RVALAAADAADLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAPDVARTAALQAR 377

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +       V PGG +++  CS+   +     +   R       L                
Sbjct: 378 IADALWRTVAPGGRLLYVTCSVFPAEGARQAEAFARRHADAQRLEAPG------------ 425

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                  ++ P  +          DGFF     +  
Sbjct: 426 -------QLLPVAVGATPQAQH--DGFFYALFAKQA 452


>gi|291295690|ref|YP_003507088.1| RNA methylase NOL1/NOP2/sun family [Meiothermus ruber DSM 1279]
 gi|290470649|gb|ADD28068.1| RNA methylase, NOL1/NOP2/sun family [Meiothermus ruber DSM 1279]
          Length = 457

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 118/307 (38%), Gaps = 20/307 (6%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL- 205
           ++P+ F  ++ +  G+     +     +     L V     +          P   I   
Sbjct: 1   MLPKAFLNKMSDLLGEAFPEFLRALTQADRSYGLRVNTLKLSPEQLRQISPWPLEPIPWS 60

Query: 206 -----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                          P +  G++++Q+ SA     L        VLDL AAPGGKT    
Sbjct: 61  PEGFYYPAEARPGPHPYYYAGLYYIQEPSAQAVGVLADPQPGERVLDLAAAPGGKTTHLA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPC 316
             +     + + ++  +R+  L  N++R     A     ++         FD V++DAPC
Sbjct: 121 ARMQGRGLLISNEIDSKRVRGLLENVERWGANLAVVSAPVEKLAQAWGAYFDRVVLDAPC 180

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G  R+ P+V+         ++A  Q+ LL      V+PGG +V+S C+   +++E+V
Sbjct: 181 SGEGMFRKDPEVVRHWGPGAPSRAARIQKTLLAAAADLVRPGGTLVYSTCTFAPEENEQV 240

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP--EGWIRITPDMLEKIDGVSSGMDGFF 434
           +   LR+    +E   ++  +   +       P      R+ P  L           G F
Sbjct: 241 IADFLRTPGWTLEDARISPLFADGVPAWGDGLPALARTARLWPHRLRGE--------GHF 292

Query: 435 AVALRRL 441
              LR++
Sbjct: 293 LARLRKI 299


>gi|283785573|ref|YP_003365438.1| hypothetical protein ROD_18751 [Citrobacter rodentium ICC168]
 gi|282949027|emb|CBG88630.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 479

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 21/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241
            ++   L  V     G  +    E    + S      G++++Q+AS+ +PV         
Sbjct: 58  ASYGWSLTPVPWCAEGFWIAREDEETLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 117

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 118 PERVMDVAAAPGSKTTQIAARMGNRGAILANEYSASRVKVLHANISRCGIGNVALTHFDG 177

Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +       FDA+L+DAPCS  G +R+ P+ L     +   + A  QR+L+      ++
Sbjct: 178 RVFGAALPEMFDAILLDAPCSGEGVVRKDPNALKNWSVESNQEIAATQRELIDSAFHALR 237

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG++V+S C+L+++++E VV  +  + P  VE +PL   + ++   ++A + EG++ + 
Sbjct: 238 PGGVLVYSTCTLNREENESVVHWLKETYPDAVEFMPLGDLFAQA---SLAQTAEGFLHVF 294

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P + +          GFF   LR+  
Sbjct: 295 PQIYDCE--------GFFVARLRKTA 312


>gi|291542931|emb|CBL16041.1| NOL1/NOP2/sun family putative RNA methylase [Ruminococcus bromii
           L2-63]
          Length = 440

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 111/258 (43%), Gaps = 23/258 (8%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +L        G  +    +SI + P    G ++VQ+ SA+  V +     +  VLDLCAA
Sbjct: 51  ELKKTPFCDEGFYIPSDVKSIGNNPLHHAGAFYVQEPSATSAVTMLDVHEDDYVLDLCAA 110

Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKL 306
           PGGK+ Q+         + + ++ + R   L  N++R+ +    +     D      +  
Sbjct: 111 PGGKSTQIGAKLNGTGLLWSNEIVRSRANILLSNIERMGISNAVVSNCRPDELCKRLENR 170

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +LVDAPCS  G  R++         + +   A  Q  +L      +K GG +V+S C
Sbjct: 171 FDRILVDAPCSGEGMFRKNDAER-EWSIEHVKSCAARQLLILNSAKDALKNGGYMVYSTC 229

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +  K+++E V+ + L  +P   ELV     + +        + +   RI P         
Sbjct: 230 TFSKEENEGVISRFLAENP-DFELVDSGVTFGRP-------TLDYARRIFP--------- 272

Query: 427 SSGMDGFFAVALRRLIQP 444
             G +G FA  L +  +P
Sbjct: 273 MDGGEGHFAAKLHKKGEP 290


>gi|312877027|ref|ZP_07737000.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796168|gb|EFR12524.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 455

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 15/268 (5%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           ++V+  IE    +   V     G    E    +   P +  G+ ++Q+ SA  PV+    
Sbjct: 41  VSVEEFIEKMGIEFEKVPWCKDGFYYTEEI-RLSKHPYYFAGLVYIQEPSAMFPVEALDI 99

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                VLDLCAAPGGK+ Q    +     + + DV   R++ L  N++ L L    I+  
Sbjct: 100 KEGEKVLDLCAAPGGKSIQIAARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNIVILNN 159

Query: 297 DAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
              +        FD +LVDAPCS  G  R+ P       ++   K    QR ++ +    
Sbjct: 160 KPKEIAESYGAYFDKILVDAPCSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDEL 219

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWI 413
           +K  G +V+S C+ + +++E ++   L+      V  +     +   I++    + +   
Sbjct: 220 LKVDGEIVYSTCTFEVEENEGIIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAA 279

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
           RI P  ++          G F   L+++
Sbjct: 280 RIYPHRVKGE--------GHFICKLKKV 299


>gi|213585491|ref|ZP_03367317.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 408

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAK 265
            + S      G++++Q+AS+ +PV        +   V+D+ AAPG KT Q    + +   
Sbjct: 14  PLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGA 73

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323
           + A + S  R++ L  N+ R  +    +   D   +       FDA+L+DAPCS  G +R
Sbjct: 74  ILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVR 133

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + PD L     +  +  A  QR+LL      ++PGG +V+S C+L++Q++E V   +  +
Sbjct: 134 KDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKET 193

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               VE +PL   +    D   AL+PEG++ + P + +          GFF   LR++
Sbjct: 194 YADAVEFLPLGDLFP---DADRALTPEGFLHVFPQIYDCE--------GFFVARLRKM 240


>gi|304403872|ref|ZP_07385534.1| Fmu (Sun) domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304346850|gb|EFM12682.1| Fmu (Sun) domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 478

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 33/247 (13%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                            P  A G++++Q+ SA    +        ++LDL AAPGGKT Q
Sbjct: 73  WCKTGFYYNEEVRPGKHPYHAAGLYYIQEPSAMSAAEALEAQPGETILDLAAAPGGKTTQ 132

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVD 313
           +   + +   + A ++   R + L  N++R       +     D         FD +++D
Sbjct: 133 IAGAMQNQGLLIANEIHPARAKILSENVERCGFRNTVVTCATPDQLSERFPVFFDRIMLD 192

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+  D +       +   A  Q  +L+     +KPGG +V+S C+ ++ ++
Sbjct: 193 APCSGEGMFRKDADAIAEWSPAHVELCAARQADILVHAARMLKPGGRLVYSTCTFNRAEN 252

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E+ +   L + P                        E   R+ P   +          G 
Sbjct: 253 EDAIAAFLEAFP--------------------TFRLEHTERLWPHQCKGE--------GH 284

Query: 434 FAVALRR 440
           F   L +
Sbjct: 285 FVAVLTK 291


>gi|218294931|ref|ZP_03495785.1| RNA methylase, NOL1/NOP2/sun family [Thermus aquaticus Y51MC23]
 gi|218244839|gb|EED11363.1| RNA methylase, NOL1/NOP2/sun family [Thermus aquaticus Y51MC23]
          Length = 455

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 15/250 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P F  G++++Q+ SA     L        VLDL AAPGGKT 
Sbjct: 58  PWCPEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLVDPRPGERVLDLAAAPGGKTT 117

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313
                +     + A +V  RR+  L  N++R     A                F  VL+D
Sbjct: 118 HLAARMGGKGLLLANEVDGRRVRGLLENVERWGAPVAVTQSPPKVLAEAFGAYFHRVLLD 177

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+  +           +++  Q+ LL Q    V PGG++V+S C+   +++
Sbjct: 178 APCSGEGMFRKDKEAARHWGPSAPRRASEVQKALLAQAARLVGPGGVLVYSTCTFAPEEN 237

Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430
           E VV   L++ P   +E   L+  +   +       P+     R+ P  LE         
Sbjct: 238 EGVVAHFLKAHPEFYLEEARLHPLFAPGVPEWGDGHPDLAKTARLWPHRLEGE------- 290

Query: 431 DGFFAVALRR 440
            G F    RR
Sbjct: 291 -GHFLARFRR 299


>gi|260589041|ref|ZP_05854954.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583]
 gi|260540820|gb|EEX21389.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583]
          Length = 459

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 120/309 (38%), Gaps = 25/309 (8%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PT 200
            +PE F  R       E   A   +   P    L V  +  +    L             
Sbjct: 3   QLPEKFLSR-MEAMLGEEFPAFLQSYDFPRKFGLRVNTNKISVEEFLKISPFHLEPIPWI 61

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 +  +     P +  G++++Q+ SA  P   F       VLDLCAAPGGK  +  
Sbjct: 62  DNGFFYDENDRPSRHPYYFAGLYYLQEPSAMTPANRFSVNPGEYVLDLCAAPGGKATELG 121

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             +     + A D+S  R + L  NL+   +    +               FD +LVDAP
Sbjct: 122 AKLQGNGFLVANDISNSRAKALLRNLELFGIKNSMVTNETPAKLAKYFPEFFDKILVDAP 181

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ PDV  T D          QR++  Q IS +KPGG +++S C+    ++E 
Sbjct: 182 CSGEGMFRKDPDVAKTWDETRPEFFGKLQREIATQAISMLKPGGELLYSTCTFSPIENEG 241

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMD 431
           ++  +L + P  +EL+ L+     +       + +      IRI P  +E          
Sbjct: 242 LISFILENFP-EIELLTLDDYEGFTKGCPDWGNKDTRLKKCIRIFPHHMEGE-------- 292

Query: 432 GFFAVALRR 440
           G F   +++
Sbjct: 293 GHFLALMKK 301


>gi|322833557|ref|YP_004213584.1| RNA methylase, NOL1/NOP2/sun family [Rahnella sp. Y9602]
 gi|321168758|gb|ADW74457.1| RNA methylase, NOL1/NOP2/sun family [Rahnella sp. Y9602]
          Length = 505

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 122/263 (46%), Gaps = 21/263 (7%)

Query: 188 TWAHKLNAVMLPTGGIRLKEL---PESIVSLPGFAEGVWWVQDASASIPVQLFGTL--NN 242
           ++   L  V   T G  +         + +      G++++Q+AS+ +PV          
Sbjct: 81  SYQWDLEPVPWCTEGFWINRHALDESRLGNALSHLAGLFYIQEASSMLPVTALFADGTQP 140

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             V+D+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  +    +   D  
Sbjct: 141 TLVMDVAAAPGSKTTQIAALMENQGGIVANEYSASRVKVLHANISRCGVSNTALTHFDGR 200

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +       FDA+L+DAPCS  G IR+ PD +     + + + A  QR+L+      +KP
Sbjct: 201 VFGAALPETFDAILLDAPCSGEGVIRKDPDAMSNWSENSVSEIAATQRELIDSAFHALKP 260

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L+ Q++++V Q +L +    VE   L   +        A++ EG++ + P
Sbjct: 261 GGVLVYSTCTLNAQENQQVCQWLLETYADAVESESLADLFP---GARKAVTQEGYLHVFP 317

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            + +          GFF    R+
Sbjct: 318 QVYDSE--------GFFVARFRK 332


>gi|310826142|ref|YP_003958499.1| RNA methylase [Eubacterium limosum KIST612]
 gi|308737876|gb|ADO35536.1| RNA methylase [Eubacterium limosum KIST612]
          Length = 462

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 118/314 (37%), Gaps = 26/314 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             IPE FKE++      E    +  +    +   +       T              +  
Sbjct: 1   MQIPEAFKEKMRGLLNDEDYEKLMSSYDGTVNKGIRTNTLKCTPEEMARKTPFELEPVDW 60

Query: 206 KELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
                 I         P +  G+++VQ+ +A    +         VLDLCAAPGGK+ QL
Sbjct: 61  CPTGYYIDSDIRPGKNPAYYAGLYYVQEPTAMTSAEALAPEPGDWVLDLCAAPGGKSTQL 120

Query: 260 IVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDA 314
                    + A ++   R E L  N++R+ +    +     +      ++ FD +LVDA
Sbjct: 121 ACMLGGQGLLVANELVNNRAEILASNVERMGVPNALLFNEFPERLAARFRERFDKILVDA 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+        + + ++  A  Q K+L      +KPGG++V+S C+   +++E
Sbjct: 181 PCSGEGMFRKDNGAAEEWNPERVLHCAKRQIKILESVDKLLKPGGVMVYSTCTFSPEENE 240

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSG 429
           +V++  L +     EL+ ++                       + + P  +         
Sbjct: 241 QVIEDFLGN--DRYELMDIDLGGLNDRGRPEWSEKGTPALTKTLHVMPFHVRGE------ 292

Query: 430 MDGFFAVALRRLIQ 443
             G F   LR+  +
Sbjct: 293 --GHFIAKLRKTAE 304


>gi|331083252|ref|ZP_08332365.1| hypothetical protein HMPREF0992_01289 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404333|gb|EGG83878.1| hypothetical protein HMPREF0992_01289 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 459

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 120/309 (38%), Gaps = 25/309 (8%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PT 200
            +PE F  R       +   A   +   P    L V  +  +    L             
Sbjct: 3   QLPEKFLSR-MEAMLGKEFPAFLQSYDFPRKFGLRVNTNKISVEEFLEISPFHLEPIPWI 61

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                 +  +     P +  G++++Q+ SA  P   F       VLDLCAAPGGK  +  
Sbjct: 62  DNGFFYDENDRPSRHPYYFAGLYYLQEPSAMTPANRFSVNPGEYVLDLCAAPGGKATELG 121

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315
             +     + A D+S  R + L  NL+   +    +               FD +LVDAP
Sbjct: 122 AKLQGNGFLVANDISNSRAKALLRNLELFGIKNSMVTNETPAKLAKYFPEFFDKILVDAP 181

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ PDV  T D          QR++  Q IS +KPGG +++S C+    ++E 
Sbjct: 182 CSGEGMFRKDPDVAKTWDETRPEFFGKLQREIATQAISMLKPGGELLYSTCTFSPIENEG 241

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMD 431
           ++  +L + P  +EL+ L+     +       + +      IRI P  +E          
Sbjct: 242 LISFILENFP-EIELLTLDDYEGFTKGCPDWGNKDTRLKKCIRIFPHHMEGE-------- 292

Query: 432 GFFAVALRR 440
           G F   +++
Sbjct: 293 GHFLALMKK 301


>gi|78045097|ref|YP_360848.1| NOL1/NOP2/sun family protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997212|gb|ABB16111.1| NOL1/NOP2/sun family protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 449

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 20/290 (6%)

Query: 164 RVLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPES--IVSLPGF 218
               + +   +P +  L +  +    E    +   +           L E   +   P  
Sbjct: 15  AAEKLKEVINAPPFRGLRINPEKISQEDLYRRYGYLETVPWCPEGYYLSEDMFLGKDPWH 74

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRR 275
             G +++Q+ SA +PV++        VLDL AAPGGK+ Q++        + A +V+  R
Sbjct: 75  WAGAFYLQEPSAMLPVEVLDPKPGDKVLDLAAAPGGKSTQILSKLKGEGILVANEVNSSR 134

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
            + L  NL+R       ++     +   K    FD +LVDAPCS  G  R++P  +    
Sbjct: 135 AKVLTENLERWGYENFLVLNESPPNLEEKFEAYFDRILVDAPCSGEGMFRKNPKAIDEWS 194

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVP 392
            + ++  +  Q+KLL      +K GG++V+S C+ + +++E VV   L+ +P   +E + 
Sbjct: 195 IEHVLGCSVRQKKLLTTAAKLLKEGGVMVYSTCTFNPEENERVVAWFLKQNPNFALESIE 254

Query: 393 LNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +        + A +    +   RI P   +          G FA  + +L
Sbjct: 255 IKGVSPGVPEWAESNLELQKTFRIWPFQQKGE--------GHFAARMVKL 296


>gi|116753601|ref|YP_842719.1| NOL1/NOP2/sun family RNA methylase [Methanosaeta thermophila PT]
 gi|116665052|gb|ABK14079.1| ribosomal RNA methyltransferase NOP2 [Methanosaeta thermophila PT]
          Length = 302

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 110/251 (43%), Gaps = 15/251 (5%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
             +    + L+   E    L  F  G+  VQ+  + +P  +        +LDLCAAPGGK
Sbjct: 55  ERMRWYPLGLRLDAEKPGRLMEFHMGLIHVQEELSMLPPVVLDPQPGERILDLCAAPGGK 114

Query: 256 ---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312
               +  + +   V A D S  R+  LR NL+RL      +   D   + P+  FD  LV
Sbjct: 115 AAQISMQMSNKGLVVANDSSSARIVPLRANLERLGAVNVVVTSYDGRRF-PQYNFDRALV 173

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCSS GT RR+P+V+              Q  LL + I   KPGG+VV+S C+   ++
Sbjct: 174 DAPCSSEGTARRYPEVIARCSAKRSADLQNLQVSLLRRAIQLTKPGGVVVYSTCTFAPEE 233

Query: 373 SEEVVQKVLRSSP-IPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSG 429
           +E VV +VL  +      +  L S+   +   ++    E     R  P          + 
Sbjct: 234 NEGVVSRVLDLADLESFTIQGLRSSQGIASWNSIDYGEELVKCRRYYPH--------END 285

Query: 430 MDGFFAVALRR 440
             GFF   LRR
Sbjct: 286 TGGFFVAKLRR 296


>gi|294140752|ref|YP_003556730.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
 gi|293327221|dbj|BAJ01952.1| ribosomal RNA small subunit methyltransferase B, putative
           [Shewanella violacea DSS12]
          Length = 385

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 143/440 (32%), Gaps = 70/440 (15%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           V+ +   L       +       L+  +Q  +  +    LR L      L  V    + R
Sbjct: 2   VLSEGKPLDRAYSHHFS---GLQLAPSEQARITVVAGDILRKLNLYCY-LSDVKSEEMSR 57

Query: 78  KKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
               L       V  + + L++                         +    R       
Sbjct: 58  MGTRLLN-----VWHMFHELELPKMQ-------------------YALQMDEREYFDRLE 93

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYIDLTV-KFDIETWAHKLN 194
           +   + A     PEW     +   G        + +     Y+ + + K   E    KL 
Sbjct: 94  KAKVQPALWDGCPEWLDTMGQAQLGDAWAKERAALSTQPKRYLRVNLLKCTREDLGKKLR 153

Query: 195 AVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
              + T  +   +         ++     F +G +  QDA + +          + V+D 
Sbjct: 154 NEQVQTKEVEGVDTALEVTSDSALFRTESFKKGWFEQQDAGSQLVAAAVDAKPGMRVVDA 213

Query: 249 CAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCP 303
           CA  GGK    A  +    ++ A+DV + +L+ L+    R + +     II         
Sbjct: 214 CAGAGGKTLSIAAQMQGKGRLLAMDVEQWKLDSLKQRARRANAHNVETRIIASSKTIKRL 273

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           K   D VL+D PCS  G ++R+PD  W    + +      Q+ +L      VK GGI+++
Sbjct: 274 KLSADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVALQKHILQSYSRMVKVGGILIY 333

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           + CS+  +++ + +   L  +     +   N                            I
Sbjct: 334 ATCSIMPEENRDQIDAFLAENDHFKLIEDEN----------------------------I 365

Query: 424 DGVSSGMDGFFAVALRRLIQ 443
               SG DGF+   L R+ +
Sbjct: 366 SVADSGFDGFYLAKLERISE 385


>gi|242399817|ref|YP_002995242.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739]
 gi|242266211|gb|ACS90893.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739]
          Length = 383

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
           S+  L  + +G ++VQ   + +   +        ++D+ AAPGGKT+ +     +  ++ 
Sbjct: 167 SLNELESYEKGYFYVQTLPSMVASHVLDPKEGDLIIDMTAAPGGKTSHIAQLLENRGEIL 226

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           ALD SK RL K++  L+RL +    +I+MD+ +        D +L+DAPC++ G     P
Sbjct: 227 ALDKSKNRLSKMKNELERLGVKNVKLIQMDSRNLPELGIQADKILLDAPCTALGV---RP 283

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +  TR   DI  +A +Q+  +   I  ++ GG++V+S C+L  +++E  V+ +L+    
Sbjct: 284 KLWETRTPKDIDATARYQKHFINAAIKSLRKGGVLVYSTCTLSYEENEGNVKYMLKK--- 340

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L     K    +  +      R  P              GFF   LR++
Sbjct: 341 -----GLKLEEQKLFIGSPGIGINKVQRFYPH--------KHKTQGFFIARLRKV 382


>gi|225374853|ref|ZP_03752074.1| hypothetical protein ROSEINA2194_00476 [Roseburia inulinivorans DSM
           16841]
 gi|225213314|gb|EEG95668.1| hypothetical protein ROSEINA2194_00476 [Roseburia inulinivorans DSM
           16841]
          Length = 281

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 11/235 (4%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK-- 255
             T         +     P    GV+++Q+ SA  P +         +LDLCAAPGGK  
Sbjct: 48  PWTTNGYYYSGNDQPGRHPYHEAGVYYIQEPSAMAPAEYLMAEPGERILDLCAAPGGKSS 107

Query: 256 -TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
             A  +     +   ++   R + L  N++R+ +    +               FD +LV
Sbjct: 108 QIACSMQGEGLIVCNEIHPARAKILSENIERMGVCNALVTNETPQKLSDNFREYFDRILV 167

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R++ D       +++   A  Q ++L      +KPGG +V+S C+    +
Sbjct: 168 DAPCSGEGMFRKNEDACDEWSPENVENCAARQAEILDCAAEMLKPGGRLVYSTCTFAPTE 227

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----SPEGWIRITPDMLEK 422
           +E  + + L   P    ++P+         +           E  IR+ P  L++
Sbjct: 228 NEGSISRFLERHP-EFSILPVEKKDGMMPGVPAWTEHPADGLEHTIRLWPHHLKR 281


>gi|323257734|gb|EGA41417.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
          Length = 406

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAK 265
            + S      G++++Q+AS+ +PV        +   V+D+ AAPG KT Q    + +   
Sbjct: 12  PLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGA 71

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323
           + A + S  R++ L  N+ R  +    +   D   +       FDA+L+DAPCS  G +R
Sbjct: 72  ILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVR 131

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + PD L     +  +  A  QR+LL      ++PGG +V+S C+L++Q++E V   +  +
Sbjct: 132 KDPDALKNWSPESNLDIAATQRELLDNAFHALRPGGTLVYSTCTLNRQENEAVCLWLKET 191

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               VE +PL   +    D   AL+PEG++ + P + +          GFF   LR++
Sbjct: 192 YADAVEFLPLGDLFP---DADRALTPEGFLHVFPQIYDCE--------GFFVARLRKM 238


>gi|242239507|ref|YP_002987688.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Dickeya dadantii
           Ech703]
 gi|242131564|gb|ACS85866.1| RNA methylase, NOL1/NOP2/sun family [Dickeya dadantii Ech703]
          Length = 481

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 21/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV---WWVQDASASIPVQLFGT--LN 241
           E +  +L  +     G  L    E+++ L    E +   +++Q+AS+ +PV       + 
Sbjct: 59  EPYGWRLAPIPWCDEGFWLLNADEAVLRLGNALEHLGGLFYIQEASSMLPVNALFHGGIT 118

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              VLD+ AAPG KT Q    + +   + A + S  R++ L  NL R  +    +   D 
Sbjct: 119 PERVLDMAAAPGSKTTQLAARMRNQGGIVANEYSSSRVKVLHANLHRCGVSNTALTHFDG 178

Query: 299 FDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +     + FDAVL+DAPCS  G +R+ P  +     + IV  A  QR+L+L     +K
Sbjct: 179 RIFGEVLPEHFDAVLLDAPCSGEGVVRKDPAAMSHWSPESIVDIAATQRELILSAFHALK 238

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG++++S C+L+ Q++++V + +L   P   E+ PL++ + ++   A   + EG++ + 
Sbjct: 239 PGGVLIYSTCTLNHQENQDVCRWLLTQFPHACEIEPLDNLFPEAHHAA---TAEGFLHVF 295

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P + +          GFF   LR+  
Sbjct: 296 PQIYDSE--------GFFIARLRKTA 313


>gi|119775174|ref|YP_927914.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
           amazonensis SB2B]
 gi|146325699|sp|A1S788|RSMF_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|119767674|gb|ABM00245.1| NOL1/NOP2/sun family protein [Shewanella amazonensis SB2B]
          Length = 467

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 18/253 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS--VLDLCAAPGG 254
               G            +L    +G++++Q+AS+ +P             +LD+ +APG 
Sbjct: 65  WCEDGFWVTVPDDCQPGNLTEHYQGLFYIQEASSMMPPCALFMDKEPRQLLLDVASAPGS 124

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DA 309
           KT QL   + +   + A + S  R + L  NL R+ +    I + D   +        DA
Sbjct: 125 KTTQLAALMHNQGLIIANEYSASRTKALHANLQRMGVANVAITQFDGRVFGAHLYETLDA 184

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           + +DAPCS  GT+R+ P  L     D+I   A  QR L+      +KPGG++V+S C+L+
Sbjct: 185 IQLDAPCSGEGTVRKDPLSLKNWCPDEIEAIAELQRDLIDSAFQALKPGGVLVYSTCTLN 244

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           ++++E+V   +       V    LN  +        AL+ EG++ I P + +        
Sbjct: 245 RRENEDVCHFLKERYGDAVVFESLNDLF---KGADKALTEEGFLHIWPQIYDSE------ 295

Query: 430 MDGFFAVALRRLI 442
             GFF   +R+  
Sbjct: 296 --GFFVARIRKTA 306


>gi|288942527|ref|YP_003444767.1| RNA methylase, NOL1/NOP2/sun family [Allochromatium vinosum DSM
           180]
 gi|288897899|gb|ADC63735.1| RNA methylase, NOL1/NOP2/sun family [Allochromatium vinosum DSM
           180]
          Length = 488

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 20/309 (6%)

Query: 149 PEWFKERLENFYGK--ERVLAISDACISPLYIDLTVKFDIETWAHKLNA-VMLPTGGIRL 205
           P+   +     Y    +   A +++   PL + L       +        V        +
Sbjct: 16  PDQIADSWLGRYRDLVDDWDAFAESLGRPLPVALWANPARISVEALTELLVEQGLSPQPI 75

Query: 206 KELPESIVSLPGFAEGVWWV--------QDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
           + LP ++   P F  G  W         Q+A + +PV L        VLD+CAAPGGKTA
Sbjct: 76  QGLPNALNLPPAFRAGQQWWYCVGLAHAQEAVSQLPVTLMDLKPGQRVLDMCAAPGGKTA 135

Query: 258 QLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVD 313
           Q+     +   V A D+S  R++ L+ NLDRL +      + DA ++      FD +L+D
Sbjct: 136 QIAFALDNRGTVVANDISYGRIKALQGNLDRLGVLNVTTTQSDASNWPTAGGQFDRILLD 195

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCSS GTIRR+P +L   D     +    QR LL + +   +PGG++++S C+   +++
Sbjct: 196 APCSSEGTIRRNPSLLQRHDPAGSQRLGPRQRALLRKAVQRCRPGGLILYSTCTFAPEEN 255

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMD 431
           E VV  +L      V L  ++       D A  ++      + P++    ++    +   
Sbjct: 256 ELVVADILAECEGRVRLRTVD---IPGFDAAPGVTEWLGRTLPPELARCRRLWPHRNDTG 312

Query: 432 GFFAVALRR 440
           GFF   L +
Sbjct: 313 GFFIALLEK 321


>gi|117621518|ref|YP_856786.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562925|gb|ABK39873.1| Sun/nucleolar protein family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 536

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS-- 244
              +L+ V     G  L    ES+   +      G++++Q+AS+ +PV            
Sbjct: 120 LGWQLDPVPWCDTGFWLSREDESVPLGNTAEHLSGLFYIQEASSMLPVTALFACEQTRRD 179

Query: 245 --VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
             +LD  AAPG KT Q+   + +   + A + S  RL+ L  NL R  +    +   D  
Sbjct: 180 GMLLDAAAAPGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANLQRCGVTNVGMTHFDAK 239

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            F     + FDA+L+DAPCS  G++R+  D L     + I + A  Q+ LL      +KP
Sbjct: 240 VFGQWLPETFDAILLDAPCSGEGSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHALKP 299

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  Q+++ V Q +L           L   +  +     A +PEG++ + P
Sbjct: 300 GGVLVYSTCTLSLQENQAVCQSLLDKFGAAFSFDSLADLFPAA---EQACTPEGYLHVWP 356

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            + +          GFF   LR+
Sbjct: 357 QIFDSE--------GFFVARLRK 371


>gi|145633872|ref|ZP_01789593.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655]
 gi|144985244|gb|EDJ92087.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655]
          Length = 265

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 33/282 (11%)

Query: 176 LYIDLTVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDAS 229
           +++ +  + + +ET+   L    +                 ++  LP F EG   VQD S
Sbjct: 1   MWLRVNSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLS 60

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A     L    N   +LD CAAPGGKT  ++    +  V ALDV   RL+++  NL+RL+
Sbjct: 61  AQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLN 120

Query: 288 LYAEDII----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
             A  +     + D +          FD +L+DAPCS+TG IRRHPD+ W R   DI + 
Sbjct: 121 QQAIVVCGDASQPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQL 180

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              Q+K+L      +KP G+++++ CS+  +++ E +Q  L +     EL+ L  +  KS
Sbjct: 181 VELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKS 239

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                        +  P          +  DGF+   L +  
Sbjct: 240 AV---------GFQFIPQ--------PNSGDGFYYAKLLKRA 264


>gi|330829687|ref|YP_004392639.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
           B565]
 gi|328804823|gb|AEB50022.1| Ribosomal RNA small subunit methyltransferase F [Aeromonas veronii
           B565]
          Length = 476

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 121/265 (45%), Gaps = 22/265 (8%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           E    +L+ V     G  L    E   + +      G++++Q+AS+ +PV      + + 
Sbjct: 57  EPLGWQLDPVPWCDTGFWLTRSDETVPLGNTAEHLSGLFYIQEASSMLPVMALFASDKIK 116

Query: 245 V----LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
                LD  AAPG KT Q+   + +   + A + S  RL+ L  N+ R  +    +   D
Sbjct: 117 ADGMLLDAAAAPGSKTTQIAALMNNQGMLVANEFSSSRLKVLSANIQRCGVTNVGMTHFD 176

Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
              F     + FDA+L+DAPCS  GT+R+  D L     + I + A  Q+ LL      +
Sbjct: 177 AKVFGQWLPETFDAILLDAPCSGEGTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL 236

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           KPGG++V+S C+L +Q+++ V Q +L      +    L   +  +     A + EG++ +
Sbjct: 237 KPGGVLVYSTCTLSEQENQAVCQSLLDKFGDALSFDSLADLFPHA---EQACTSEGYLHV 293

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P + +          GFF   LR+
Sbjct: 294 WPQIFDSE--------GFFVARLRK 310


>gi|257096815|sp|A8GDM6|RSMF_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 478

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 26/272 (9%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
            +  +L  +     G  ++   E   + S      G++++Q+AS+ +PV     G     
Sbjct: 60  DYDWRLEPIPWCAEGFWIERGDEELRLGSAAEHLSGLFYIQEASSMLPVSALFAGAEAPS 119

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVLDVAAAPGSKTTQIAALMNNQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD +     + +   A  QR+L+      + PG
Sbjct: 180 FGAALPESFDAILLDAPCSGEGVVRKDPDAMSNWSPESVTAIADTQRELIDSAFHALAPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+S C+L+ Q+++++V  +L +    V + PL   +        AL+ EG++ + P 
Sbjct: 240 GVMVYSTCTLNAQENQQIVNGLLATYGDAVSIEPLGDLFP---GAKQALTAEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR------LIQP 444
           + +          GFF   LR+      L +P
Sbjct: 297 IYDSE--------GFFVARLRKHHSVPPLAKP 320


>gi|121533337|ref|ZP_01665165.1| Fmu (Sun) domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307896|gb|EAX48810.1| Fmu (Sun) domain protein [Thermosinus carboxydivorans Nor1]
          Length = 457

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 104/260 (40%), Gaps = 33/260 (12%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
            E     +  V     G    +        P F  G++++Q+ SA +P Q+        V
Sbjct: 47  RELLPFAVEPVPWCPDGFYYDDTAVRPAKHPYFYAGLYYIQEPSAMLPAQMLSAQPGERV 106

Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFD 300
           LDLCAAPGGK+ Q    +     + A D+  +R + L  NL+R       +     D   
Sbjct: 107 LDLCAAPGGKSVQLAGQLARQGLLVANDIHPQRAKALLKNLERCGAVNAVVCNETPDRLA 166

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD +LVDAPCS  G  R+ PD++       + K A +Q  +L    + ++PGG 
Sbjct: 167 RVFTGFFDKILVDAPCSGEGMFRKDPDMVRAWSEQAVTKYAAWQADILRHVPAMLRPGGT 226

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           VV+S C+   +++EE + + L   P                        EG  R+ P  +
Sbjct: 227 VVYSTCTFSPEENEEQIGRFLVGHPDFAL--------------------EGSERLWPHKV 266

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                      G FA  + R
Sbjct: 267 RGE--------GHFAAKMTR 278


>gi|312793398|ref|YP_004026321.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180538|gb|ADQ40708.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 455

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 19/307 (6%)

Query: 146 SIIPEWFKERLENF--YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200
             +PE F  +++       ++ + + D      +   T K  +E +  K+      +   
Sbjct: 1   MNLPEEFLSKMKEILKEEFDQFIKVYDFDSYKGFRVNTAKVSVEEFIKKMGIEFEKVPWC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                      +   P +  G+ ++Q+ SA  PV+         VLDLCAAPGGK+ Q  
Sbjct: 61  KDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDIKEGEKVLDLCAAPGGKSIQIA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315
             +     + + DV   R++ L  N++ L L    I+     +        FD +LVDAP
Sbjct: 121 ARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNIVILNNKPKEIAESYGAYFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P       ++   K    QR ++ +    +K  G +V+S C+ + +++E 
Sbjct: 181 CSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDELLKVDGEIVYSTCTFEVEENEG 240

Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           ++   L+      V  +     +   I++    + +   RI P  ++          G F
Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAARIYPHRVKGE--------GHF 292

Query: 435 AVALRRL 441
              L+++
Sbjct: 293 ICKLKKV 299


>gi|291283017|ref|YP_003499835.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O55:H7 str. CB9615]
 gi|290762890|gb|ADD56851.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli
           O55:H7 str. CB9615]
          Length = 506

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 87  YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 146

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 147 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 206

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 207 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 266

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 267 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLNVFPQ 323

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 324 IYDCE--------GFFVARLRK 337


>gi|212224781|ref|YP_002308017.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
 gi|212009738|gb|ACJ17120.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
          Length = 383

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
           S+  L  F EG+++ Q   + +  ++        ++D+ AAPGGKT+ +   + +  ++ 
Sbjct: 168 SLSELESFKEGLFYAQSLPSMVVARILEPSEEELIIDMAAAPGGKTSHIAQLMQNRGEII 227

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D SK RL K+   L RL +    +I MD+          D +L+DAPC++ G     P
Sbjct: 228 AIDKSKNRLRKMEEELKRLGVKNVKLIHMDSRKLPELGIEADKILLDAPCTALGI---RP 284

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +  +R   DI  +A +QR  +   I  ++ GG++V+S C+L  +++E  V+ +L     
Sbjct: 285 KLWESRTPKDIEATARYQRHFINAAIKSLRKGGVLVYSTCTLSYEENEANVKYMLSK--- 341

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L          +  +  +G  R  P+             GFF   LR++
Sbjct: 342 -----GLKLEEQSLFIGSHGIGLDGVQRFYPN--------RHLTQGFFIAKLRKV 383


>gi|291525122|emb|CBK90709.1| NOL1/NOP2/sun family putative RNA methylase [Eubacterium rectale
           DSM 17629]
          Length = 462

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 33/260 (12%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           ++T     +  +         +        P    G++++Q+ SA     L      + V
Sbjct: 51  LKTLKISSDKKVSWADEAYYFDENVRPGKHPYHEMGLYYIQEPSAMSAAALLAPKPGMRV 110

Query: 246 LDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LDLCAAPGGK+ QL         + + +++ +R   L  N++R+ +    +   D+F   
Sbjct: 111 LDLCAAPGGKSTQLATYLGDSGLLVSNEINTQRSRILSQNIERMGIKNAIVTNEDSFVLA 170

Query: 303 PKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 F+A+ VDAPCS  G  R+ P+ +     +++   A  Q+++L      +KPGG 
Sbjct: 171 SHFPGFFNAIQVDAPCSGEGMFRKLPEAIEQWSMENVAICAARQKEILDNAAVMLKPGGT 230

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+  ++++E+V++  L   P                      + E   R  P  +
Sbjct: 231 IVYSTCTFSREENEDVIECFLERHPD--------------------FTLEEMERFWPHKV 270

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           +          G F   L R
Sbjct: 271 DGE--------GHFVAKLVR 282


>gi|157370355|ref|YP_001478344.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia
           proteamaculans 568]
 gi|157322119|gb|ABV41216.1| putative RNA methylase, NOL1/NOP2/sun family [Serratia
           proteamaculans 568]
          Length = 503

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 26/272 (9%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
            +  +L  +     G  ++   E   + S      G++++Q+AS+ +PV     G     
Sbjct: 85  DYDWRLEPIPWCAEGFWIERGDEELRLGSAAEHLSGLFYIQEASSMLPVSALFAGAEAPS 144

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 145 RVLDVAAAPGSKTTQIAALMNNQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRV 204

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD +     + +   A  QR+L+      + PG
Sbjct: 205 FGAALPESFDAILLDAPCSGEGVVRKDPDAMSNWSPESVTAIADTQRELIDSAFHALAPG 264

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+S C+L+ Q+++++V  +L +    V + PL   +        AL+ EG++ + P 
Sbjct: 265 GVMVYSTCTLNAQENQQIVNGLLATYGDAVSIEPLGDLFP---GAKQALTAEGFLHVFPQ 321

Query: 419 MLEKIDGVSSGMDGFFAVALRR------LIQP 444
           + +          GFF   LR+      L +P
Sbjct: 322 IYDSE--------GFFVARLRKHHSVPPLAKP 345


>gi|313903841|ref|ZP_07837230.1| RNA methylase, NOL1/NOP2/sun family [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466029|gb|EFR61554.1| RNA methylase, NOL1/NOP2/sun family [Thermaerobacter subterraneus
           DSM 13965]
          Length = 487

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 121/302 (40%), Gaps = 17/302 (5%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT--------VKFDIETWAHKLNAVMLPTGGI 203
             ER             + A   P  + +         ++  +E    +L          
Sbjct: 5   VFERYRTIIDDWEAFQAALARPQPATLRVNRLKADPGALRTRLEERGFRLEPYDWYPDLW 64

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260
           R+ E P           G +++Q+A+A++PV          VLDL AAPGGK+ Q+   +
Sbjct: 65  RVVEEPFPPALTLEHWLGWFYLQEAAAAVPVLALDPRPGEVVLDLSAAPGGKSTQMAERM 124

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320
                V A D   RRL  L  NL RL +    +   D   +     FD VLVDAPCS+ G
Sbjct: 125 GGRGMVVANDPDPRRLAALAHNLQRLGITMAVVTRADGRQFPGGVAFDRVLVDAPCSAEG 184

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             RR              +    Q  LL +G++  +PGG+VV+S C+   +++E VV ++
Sbjct: 185 NARRSARAREGAGRHQRRRLPAVQEALLRRGLALARPGGVVVYSTCTFAPEENEAVVDRI 244

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438
           LR +   V L PL      +      ++     R  P++          +D  G F   L
Sbjct: 245 LREAEGAVRLEPLPPGLPGTAG----VTAWEGRRFRPEVELCRRLYPHHLDSGGMFVARL 300

Query: 439 RR 440
           R+
Sbjct: 301 RK 302


>gi|326791170|ref|YP_004308991.1| Fmu (Sun) domain protein [Clostridium lentocellum DSM 5427]
 gi|326541934|gb|ADZ83793.1| Fmu (Sun) domain protein [Clostridium lentocellum DSM 5427]
          Length = 453

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 103/255 (40%), Gaps = 18/255 (7%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
             +         +  E     P +  G++++Q+ SA  P      +    VLDLCAAPGG
Sbjct: 56  KEVPWCKEGFYYDKEEKPTKHPYYYAGLYYIQEPSAMSPGAYLPIVPGDRVLDLCAAPGG 115

Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDA 309
           K+ Q    +     + + D+S  R + L  NL+        +     +         FD 
Sbjct: 116 KSTQIAARMEGKGVLVSNDISASRAKALLKNLENFGARQAIVTSETSEKLASKWPGYFDK 175

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G  R++   + + +   +      Q  +L    + +KP G++++S C+  
Sbjct: 176 ILIDAPCSGEGMFRKNETAVKSWENYGVDYCMRLQETILEDAATMLKPDGMLLYSTCTFS 235

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDG 425
            +++E ++   L+      ++VPL             +      +G +R+ P  +E    
Sbjct: 236 PEENEGMIGAFLKKH-SDFKVVPLLPVGGIQEGKPEWIDAPASLKGALRLWPHHIEGE-- 292

Query: 426 VSSGMDGFFAVALRR 440
                 G F   L+R
Sbjct: 293 ------GHFVCLLKR 301


>gi|146312051|ref|YP_001177125.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp. 638]
 gi|167012767|sp|A4WBJ4|RSMF_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|145318927|gb|ABP61074.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacter sp. 638]
          Length = 480

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 130/268 (48%), Gaps = 23/268 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +  +L  V     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YRWQLTPVPWCAEGFWIEREDEDALPLGSTAEHLSGLFYIQEASSMLPVTALFAEDNQPE 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNRGVILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L        ++ A  QR+L+      ++PG
Sbjct: 180 FGAALPESFDAILLDAPCSGEGVVRKDPDALKNWSVASNLEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+S C+L++ ++E V   +    P  VE +PL+S +  + +   A++PEG++ + P 
Sbjct: 240 GMLVYSTCTLNRDENESVCLWLKEQYPQAVEFLPLDSLFPSATE---AVTPEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR--LIQP 444
           + +          GFF   +R+  +I+P
Sbjct: 297 IFDCE--------GFFVARMRKTAVIEP 316


>gi|253751857|ref|YP_003024998.1| NOL1/NOP2/sun family protein [Streptococcus suis SC84]
 gi|253753680|ref|YP_003026821.1| NOL1/NOP2/sun family protein [Streptococcus suis P1/7]
 gi|253755440|ref|YP_003028580.1| NOL1/NOP2/sun family protein [Streptococcus suis BM407]
 gi|251816146|emb|CAZ51770.1| NOL1/NOP2/sun family protein [Streptococcus suis SC84]
 gi|251817904|emb|CAZ55674.1| NOL1/NOP2/sun family protein [Streptococcus suis BM407]
 gi|251819926|emb|CAR46010.1| NOL1/NOP2/sun family protein [Streptococcus suis P1/7]
 gi|292558427|gb|ADE31428.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus suis GZ1]
 gi|319758212|gb|ADV70154.1| NOL1/NOP2/sun family protein [Streptococcus suis JS14]
          Length = 433

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 118/311 (37%), Gaps = 31/311 (9%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F ++  +  G E   A  ++               E+   +L+           
Sbjct: 1   MQLPQDFIDKYNHLLGSE-AQAFFESFEQDPISGFRTNPLKES---QLDFEQPIPNMTWS 56

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                S    P    G+ + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 57  YYGKVS-GKSPEHVTGLVYSQEPAAQVVGQIAAPKKGMKVLDLAAAPGGKSTHLLSYLEN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R   L  N++R       +     D  +      FD +++DAPCS  G
Sbjct: 116 TGLLVSNEISNKRARILAENIERFGARNVVVTNESADRLEKVFPGYFDMIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++PD +         + A  QR++L   ++ + P G +++S C+   +++EEVV  +
Sbjct: 176 MFRKYPDAIQYWSKHYPAQCASLQREILESALNMLAPDGQLIYSTCTWSPEENEEVVTWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR- 439
           L    + +  +P  +   + I            R+ P                F    R 
Sbjct: 236 LEQYDLELIDIPKINGMVEGIGYTEVA------RMYPHHFAGEGQ--------FVAKFRF 281

Query: 440 ------RLIQP 444
                 + ++P
Sbjct: 282 LGEASQKKLKP 292


>gi|238924345|ref|YP_002937861.1| NOL1/NOP2/sun family protein [Eubacterium rectale ATCC 33656]
 gi|238876020|gb|ACR75727.1| NOL1/NOP2/sun family protein [Eubacterium rectale ATCC 33656]
          Length = 462

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 33/260 (12%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           ++T        +         +        P    G++++Q+ SA     L      + V
Sbjct: 51  LKTLKISSEKKVSWANEAYYFDENVRPGKHPYHEMGLYYIQEPSAMSAAALLAPKPGMRV 110

Query: 246 LDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LDLCAAPGGK+ QL         + + +++ +R   L  N++R+ +    +   D+F   
Sbjct: 111 LDLCAAPGGKSTQLATYLGDSGLLVSNEINTQRSRILSQNIERMGIKNAIVTNEDSFVLA 170

Query: 303 PKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 F+A+ VDAPCS  G  R+ P+ +     +++   A  Q+++L      +KPGG 
Sbjct: 171 SHFPGFFNAIQVDAPCSGEGMFRKLPEAIEQWSMENVAICAARQKEILDNAAVMLKPGGT 230

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+  ++++E+V++  L   P                      + E   R  P  +
Sbjct: 231 IVYSTCTFSREENEDVIECFLERHPD--------------------FTLEEMERFWPHKV 270

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           +          G F   L R
Sbjct: 271 DGE--------GHFVAKLVR 282


>gi|291000320|ref|XP_002682727.1| proliferating-cell nucleolar antigen p120 [Naegleria gruberi]
 gi|284096355|gb|EFC49983.1| proliferating-cell nucleolar antigen p120 [Naegleria gruberi]
          Length = 702

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 122/315 (38%), Gaps = 31/315 (9%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVM---- 197
                    +   + +    ++   +A   P  + +    +K      A  L        
Sbjct: 280 YYGYNSELIDVFASMFSLPELIEFLEANEKPRPLTIRSNILKTRRRELAQNLINRGINLD 339

Query: 198 ----LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                   G+++ +    + + P +  G + +Q AS+ +PV       N  V+D+ AAPG
Sbjct: 340 PLDKWSKAGLKIYDANVPVGATPEYLAGHYMLQGASSFLPVMALAPKENEKVIDMAAAPG 399

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFD 308
           GKT  L   + +   + A DV+  R + L  N+ R+      +   D  D         D
Sbjct: 400 GKTTYLSALMKNTGVIFANDVNVDRTKALIANIHRMGCRNCIVANYDGRDMPQILPTKVD 459

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFS 364
            VL+DAPC+  G I R P +   +   DI      QR+L+L  I  V    + GG +V+S
Sbjct: 460 RVLLDAPCTGLGVISRDPSIKSQKGKKDIELLCKLQRELILAAIDCVDADSETGGYIVYS 519

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLE 421
            CS+   ++E VV   L+   + +    L      + K  +     S +  +R  P +  
Sbjct: 520 TCSVSVDENEAVVNYALKKRHVKIVPTGLQFGTPGFIKIGERHFDPSLKLTMRYFPHV-- 577

Query: 422 KIDGVSSGMDGFFAV 436
                   MDGF+  
Sbjct: 578 ------HNMDGFYVC 586


>gi|326391032|ref|ZP_08212580.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992900|gb|EGD51344.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 460

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 16/256 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E   +      G++++Q+ +A   V++        +LD+ AAPGGKT 
Sbjct: 60  PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
                I     + A ++ K+R++ L  N++R+ +    I     +      +  FD +LV
Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLATAFEGYFDKILV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        ++++  +  QR +L      +K GGI+V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVMSCSITQRNILRSVAPLLKKGGILVYSTCTFAPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSG 429
            E V++K L   P         S ++          PE     +R+ P  +         
Sbjct: 240 DEGVIKKFLEEHPEFEIEESEISKFFDRGHPEWVEGPEDLKKCMRLWPHKVRGE------ 293

Query: 430 MDGFFAVALRRLIQPK 445
             G F   LR+  + +
Sbjct: 294 --GHFIAKLRKKEEEE 307


>gi|212223865|ref|YP_002307101.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
 gi|212008822|gb|ACJ16204.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
          Length = 312

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 11/262 (4%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E  +       +P          +++  +P  + G+ + Q+AS+ IP  +        VL
Sbjct: 53  ERLSEDYKLEPIPWVREGFFINVDNLARVPEHSLGLVFGQEASSMIPPVVLDPKPGELVL 112

Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYC 302
           D+ AAPG K    AQ + +   + A D    R   L  NL+R+ +    +   D  +   
Sbjct: 113 DMAAAPGSKTGQIAQYMENEGCIIANDPKIDRANILIANLNRMGVLNTRVTTRDGAYFGR 172

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            +  FD VL+DAPCSS G IR+    L       +VK    Q++L+L     +KPGG++V
Sbjct: 173 FENTFDRVLLDAPCSSVGMIRKSWKFLTGWRLRGVVKYMNIQKRLILAAYKALKPGGVLV 232

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C++D  ++EEVV  +LR +   ++ + L     + +      +    +R       +
Sbjct: 233 YSTCTIDPLENEEVVDYLLRKTDARLDDIDLPVKTSEPVLEWEGRTYSEELR----KTLR 288

Query: 423 IDGVSSGMDGFFAVALRRLIQP 444
           I    +  + FF     ++++P
Sbjct: 289 IHPNDNDTEAFFIA---KIVKP 307


>gi|255281791|ref|ZP_05346346.1| NOL1/NOP2/sun family protein [Bryantella formatexigens DSM 14469]
 gi|255267858|gb|EET61063.1| NOL1/NOP2/sun family protein [Bryantella formatexigens DSM 14469]
          Length = 549

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 18/235 (7%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTA 268
           +   P +  G+++VQ+ SA +P  L        +LDLCAAPGGK  +L         + A
Sbjct: 142 VTRHPYYYAGLYYVQEPSAMLPAALLEAEPGERILDLCAAPGGKATELGSRLAGEGVLVA 201

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326
            D+S  R + L  NL++  +    +               FD +LVDAPCS  G +RR P
Sbjct: 202 NDISASRAKALLKNLEQHGVGNVLVCSEAPQKLQKIYPAYFDRILVDAPCSGEGMLRREP 261

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +    +       A  QR+++    + ++PGG +V+S C+  +Q++EE V  +L   P 
Sbjct: 262 SMKKAYEAHGPAYYAPLQREIVEAAAAMLRPGGRMVYSTCTFSEQENEETVLALLADHP- 320

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             EL  + +      D+   L+  G +R+ P  ++          G FA  L +L
Sbjct: 321 --ELRLVKTEVPGGEDIPEMLA--GCVRLYPHRVKGE--------GHFAAVLEKL 363


>gi|239623514|ref|ZP_04666545.1| Fmu (Sun) domain-containing protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521545|gb|EEQ61411.1| Fmu (Sun) domain-containing protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 497

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 104/266 (39%), Gaps = 12/266 (4%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
              A      +         +  +     P    G++++Q+ SA    +L        +L
Sbjct: 63  AAQAGLCLGKIPWVKEGFYYDAAKRPGKHPYHEAGLYYIQEPSAMAVTELLDPRPGERIL 122

Query: 247 DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           DLCAAPGGK++ +         + + ++   R + L  N++R+ +    +   D+ +   
Sbjct: 123 DLCAAPGGKSSHIASRLKARGFLLSNEIHPARAKVLSQNMERMGVRNCVVSNEDSGNLAS 182

Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD ++VDAPCS  G  R+          + +   A  Q ++L    + ++PGG +
Sbjct: 183 HFPEFFDRIVVDAPCSGEGMFRKDEAARGQWSEEHVRMCAGRQGQILDNAAAMLRPGGRM 242

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPEGWI------R 414
           V+S C+   +++E  +   L+      +E V     + +      A    G        R
Sbjct: 243 VYSTCTFAPEENEGAILAFLKRHSGFCLEAVEGYEGFSRGNAGWAAYGGAGLADEPSVDR 302

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
              +   +I   +   +G F   L++
Sbjct: 303 YHLERAFRIMPQNLEGEGHFIAVLKK 328


>gi|225018864|ref|ZP_03708056.1| hypothetical protein CLOSTMETH_02814 [Clostridium methylpentosum
           DSM 5476]
 gi|224948334|gb|EEG29543.1| hypothetical protein CLOSTMETH_02814 [Clostridium methylpentosum
           DSM 5476]
          Length = 458

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 104/271 (38%), Gaps = 18/271 (6%)

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            L    +            +P          + +   P    GV++VQ+ SA   V    
Sbjct: 49  TLKCSPERFVSLAPFPLQPVPFCPEGFYVKEDGLGHHPYHHAGVFYVQEPSALSAVTALD 108

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                 VLDLCAAPGGK+ Q+         + + +    R   L  N++R+ +    +  
Sbjct: 109 PQPGERVLDLCAAPGGKSTQIAARLAGKGLLVSNEYVSSRANILLSNIERMGIRNAVVTN 168

Query: 296 --MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D      +  FD VLVDAPCS  G  R+ P  +     +     A  QR +L     
Sbjct: 169 LHPDKLCGRLEGWFDRVLVDAPCSGEGMFRKDPRAVEEWSDEHSKSCAVRQRGILQSAKE 228

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---E 410
            V+PGG++V+S C+    ++E VV   L  +P   EL  ++ +   S       +P    
Sbjct: 229 AVRPGGVLVYSTCTFSLDENEMVVCSFLNDNP-DFELDQVSLSLGTSSRQEWLDTPYDLT 287

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              RI P           G +G F   LRR 
Sbjct: 288 KMHRIFPH---------QGGEGHFVARLRRK 309


>gi|91211057|ref|YP_541043.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           UTI89]
 gi|117623991|ref|YP_852904.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC
           O1]
 gi|237705787|ref|ZP_04536268.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
           3_2_53FAA]
 gi|91072631|gb|ABE07512.1| hypothetical protein YebU [Escherichia coli UTI89]
 gi|115513115|gb|ABJ01190.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|226900544|gb|EEH86803.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp.
           3_2_53FAA]
 gi|294490935|gb|ADE89691.1| NOL1/NOP2/sun family putative RNA methylase [Escherichia coli
           IHE3034]
 gi|307626685|gb|ADN70989.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli
           UM146]
 gi|315286546|gb|EFU45981.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS
           110-3]
          Length = 481

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 62  YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 241

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  +    VE +PL   +        AL+ +G++ + P 
Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 298

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 299 IYDCE--------GFFVARLRK 312


>gi|325686144|gb|EGD28195.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 474

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 16/301 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           IP+ FKE+     G+E    + ++  +           ++  A       +  G      
Sbjct: 4   IPDQFKEKFTGLLGQEEAGKLLESL-AEPSKKAYRINSLKKGAVAYPQEEVVPGIPNAYY 62

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
              S    P +  G+ + QD +A  P Q         VLDLCAAPGGK+    Q +    
Sbjct: 63  GEVS-GKDPEWTAGMVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR NL+R  +    +   D+F    +    FDA+LVDAPCS  G  
Sbjct: 122 LLVANEISPSRAKILRENLERWGVSNAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+  D +     +++   A  QR++L + +  +KPGG +++S C+   ++ E +V  +L 
Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEGIVSWLLD 241

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +  +    A     +     +      R  P                F  +L++ 
Sbjct: 242 EYGFRLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKT 293

Query: 442 I 442
            
Sbjct: 294 A 294


>gi|167036928|ref|YP_001664506.1| NOL1/NOP2/sun family RNA methylase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115347|ref|YP_004185506.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855762|gb|ABY94170.1| putative RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928438|gb|ADV79123.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 460

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 16/256 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +  E   +      G++++Q+ +A   V++        +LD+ AAPGGKT 
Sbjct: 60  PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
                I     + A ++ K+R++ L  N++R+ +    I     +      +  FD +LV
Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLATAFEGYFDKILV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        ++++  +  QR +L      +K GGI+V+S C+   ++
Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVMSCSITQRNILRSVAPLLKKGGILVYSTCTFAPEE 239

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSG 429
            E V++K L   P         S ++          PE     +R+ P  +         
Sbjct: 240 DEGVIKKFLEEHPEFEIEESEISKFFDRGHPEWVEGPEDLKKCMRLWPHKVRGE------ 293

Query: 430 MDGFFAVALRRLIQPK 445
             G F   LR+  + +
Sbjct: 294 --GHFIAKLRKKEEEE 307


>gi|116514165|ref|YP_813071.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093480|gb|ABJ58633.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 474

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 122/301 (40%), Gaps = 16/301 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           IP+ FKE+  +  G+E    + D+  +           ++  A          G      
Sbjct: 4   IPDQFKEKFTSLLGQEEAGKLLDSL-AEPSKKAYRINSLKEGAVVYPQEEAVPGIPNAYY 62

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
              S    P +  G+ + QD +A  P Q         VLDLCAAPGGK+    Q +    
Sbjct: 63  GEVS-GKDPEWTAGLVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR NL+R  +    +   D+F    +    FDA+LVDAPCS  G  
Sbjct: 122 LLVANEISPSRAKILRENLERWGVSNAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+  D +     +++   A  QR++L + +  +KPGG +++S C+   ++ EE+V  +L 
Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLLD 241

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +  +    A     +     +      R  P                F  +L++ 
Sbjct: 242 EYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKA 293

Query: 442 I 442
            
Sbjct: 294 A 294


>gi|295095564|emb|CBK84654.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 465

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 126/262 (48%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +  +L  V     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 45  YGWQLTPVPWCEEGFWIERDDEESLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNQPE 104

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  ++   +   D   
Sbjct: 105 RVMDVAAAPGSKTTQIAARMNNRGAILANEFSASRVKVLHANISRCGIHNVALTHFDGRV 164

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  ++ A  QR+L+      ++PG
Sbjct: 165 FGAALPEAFDAILLDAPCSGEGVVRKDPDALKNWSVESNLEIAATQRELIDSAFHALRPG 224

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++ ++E+V   + +     VE +PL++ +      + A +PEG++ + P 
Sbjct: 225 GTLVYSTCTLNRDENEDVCLWLKQRYADAVEFLPLDTLF---DSASHAATPEGFLHVFPQ 281

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 282 IYDCE--------GFFVARLRK 295


>gi|218558698|ref|YP_002391611.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S88]
 gi|146325691|sp|A1AC00|RSMF_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|146325694|sp|Q1RAV2|RSMF_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|226725333|sp|B7MBP2|RSMF_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|218365467|emb|CAR03194.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli
           S88]
 gi|323952336|gb|EGB48209.1| NOL1/NOP2/sun family protein [Escherichia coli H252]
          Length = 479

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  +    VE +PL   +        AL+ +G++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|156540019|ref|XP_001600726.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 691

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 103/274 (37%), Gaps = 46/274 (16%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            +L+   + I     F                  Q+  + +P  +        VLD+CAA
Sbjct: 132 WQLQLTRKDIRRSEAFFRLHNFLIAETNSGNISRQEVVSMVPPLVLDVKPWHKVLDMCAA 191

Query: 252 PGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           PG KTAQLI               V A D+   R   L     RL+     I   D+   
Sbjct: 192 PGSKTAQLIEMIHADEKIPLPEGFVIANDLDNNRCYMLVHQAKRLNSPNILITNHDSSVM 251

Query: 302 CPKK-----------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                           FD +L D PCS  GT+R++PD+       +       Q ++  +
Sbjct: 252 PNFTVTQADGSKGTLKFDRILADVPCSGDGTMRKNPDIWCKWSPANGNNLHGIQYRIAKR 311

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
           G+  +  GG +V+S CSL+  ++E V+ ++L  +   V LV    +    +      +  
Sbjct: 312 GVELLAVGGKMVYSTCSLNPIENEAVLHRLLSETGDSVRLVDCKDSVPGLV-----YNHG 366

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            ++RI P   +          GFF   L +L +P
Sbjct: 367 NYMRILPHHQD--------TGGFFVAVLEKL-KP 391


>gi|229823683|ref|ZP_04449752.1| hypothetical protein GCWU000282_00984 [Catonella morbi ATCC 51271]
 gi|229786920|gb|EEP23034.1| hypothetical protein GCWU000282_00984 [Catonella morbi ATCC 51271]
          Length = 443

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 109/299 (36%), Gaps = 20/299 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P  F+ +     G E   A  D+          V     + +    +     G    
Sbjct: 1   MTFPAGFQAKYLALLGPEEGQAFLDSFKLEAESGFRVNPLKASQSALPESAQPMPGTPWG 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                +  S      G+ + Q+ +A +  Q       L VLDL AAPGGK+      + +
Sbjct: 61  YYGKVA-GSSTAHVTGLVYSQEPAAQMVGQAAEPQPGLKVLDLAAAPGGKSTHLLSYLDN 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              + A ++  +R + L  NL+R                       FD +++DAPCS  G
Sbjct: 120 QGLLVANEIHPKRSKILAENLERFGARNVVATNESPERLAQVFPAYFDLIVLDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+  + +     +   + A  QR++L QG+  +KPGG +V+S C+   +++E++V  +
Sbjct: 180 MFRKQAEAMDYWTPEYPSQCAALQREILEQGLLMLKPGGTLVYSTCTWAPEENEDIVAWL 239

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  VP  +     +            R+ P                F    R
Sbjct: 240 LEHYPLTLLEVPKLNGMVPGLSYPETA------RMYPQHFRGEGQ--------FVAKFR 284


>gi|323956465|gb|EGB52207.1| NOL1/NOP2/sun family protein [Escherichia coli H263]
          Length = 479

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++ G
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L+++++E V   +  +    VE +PL   +        AL+ +G++ + P 
Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|313123810|ref|YP_004034069.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280373|gb|ADQ61092.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 474

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 16/301 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           IP+ FKE+     G+E    + ++  +           ++  A       +  G      
Sbjct: 4   IPDQFKEKFTGLLGQEEAGKLLESL-AEPSKKAYRINSLKKGAVAYPQEEVVPGIPNAYY 62

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
              S    P +  G+ + QD +A  P Q         VLDLCAAPGGK+    Q +    
Sbjct: 63  GEVS-GKDPEWTAGMVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR NL+R  +    +   D+F    +    FDA+LVDAPCS  G  
Sbjct: 122 LLVANEISPSRAKILRENLERWGVANAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+  D +     +++   A  QR++L + +  +KPGG +++S C+   ++ EE+V  +L 
Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLLD 241

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +  +    A     +     +      R  P                F  +L++ 
Sbjct: 242 EYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKA 293

Query: 442 I 442
            
Sbjct: 294 A 294


>gi|254173359|ref|ZP_04880032.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing
           RNA-binding PUA domain [Thermococcus sp. AM4]
 gi|214032768|gb|EEB73597.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing
           RNA-binding PUA domain [Thermococcus sp. AM4]
          Length = 389

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
           S+  L  F EG+++ Q   + +   +        ++D+ AAPGGKT+ +     +  ++ 
Sbjct: 174 SLSELESFKEGLFYAQSLPSMVVAHVLEPSEEELIIDMAAAPGGKTSHIAQLLQNRGEII 233

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D S+ RL K+   L RL +    +I MDA          D +L+DAPC++ G     P
Sbjct: 234 AIDKSRNRLRKMEEELKRLGVKNVKLIRMDARKLPELGLQADKILLDAPCTALGI---RP 290

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +  +R   DI+ +A +QR  +   I  ++PGG++V+S C+L  +++E  V+ +L     
Sbjct: 291 KLWESRTPRDIIATARYQRAFIWAAIKSLRPGGVLVYSTCTLSYEENEANVKFMLEK--- 347

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L          +  L  E   R  P+             GFF   LR++
Sbjct: 348 -----GLKLEEQAVFIGSEGLGIEKVQRFYPN--------RHLTQGFFIARLRKV 389


>gi|227892528|ref|ZP_04010333.1| tRNA/rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227865649|gb|EEJ73070.1| tRNA/rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 459

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 115/301 (38%), Gaps = 17/301 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           +P  FKE+     G++    +  A          V           +             
Sbjct: 4   LPNSFKEKYIELLGEKTADQLFKAMNQDSKKAFRVNTLKNQVKISYSLAKPVPEINHAYY 63

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
              S    P +  G  + QD +A  P  + G      VLDLCAAPGGKT    + + +  
Sbjct: 64  GEIS-GEDPEWVAGYVYSQDPAAMFPAAISGVKPGDRVLDLCAAPGGKTTALGEQLKNKG 122

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR N++R  +    II        P     FD +LVDAPCS  G  
Sbjct: 123 LLVANEISSTRAKILRENIERWGISNALIINESPEKLTPVFPDYFDIILVDAPCSGEGMF 182

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++P+ +     D ++     Q  +L + +  +KPGG +V+S C+   ++ E++V+ ++ 
Sbjct: 183 RKNPEAIDYWSQDYVLVCQKRQETILNEAVKMLKPGGRLVYSTCTFSPEEDEKIVEWLIN 242

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                +    + + +        A   +     +R  P                F   L+
Sbjct: 243 EYGFSILDTHIKNDHISVGRPKWANDDQNLKKTLRFWPQDGIGEGQ--------FVAVLQ 294

Query: 440 R 440
           +
Sbjct: 295 K 295


>gi|310819947|ref|YP_003952305.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309393019|gb|ADO70478.1| Methyltransferase, RsmB/NOP family [Stigmatella aurantiaca DW4/3-1]
          Length = 322

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 124/311 (39%), Gaps = 32/311 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVM-- 197
           A  + +P+W      + +G E           P  I L V       E  A +L +    
Sbjct: 29  ALRASLPDWLAHHFAHEWGPE-AEDFCAHLNVPGPITLRVNRLRISREDLASRLRSEGVQ 87

Query: 198 -----LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
                     + ++    ++  L    EG++ VQD  + +   L       +VLDLCA  
Sbjct: 88  TRPGLWSPWALHIEGERPNLYGLKALQEGLFEVQDEGSQLLGLLVEARPGETVLDLCAGA 147

Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           GGKT Q    + +   + A D    RL++L     R  L    ++             D 
Sbjct: 148 GGKTLQLGAAMENQGPLLAYDPDAGRLDRLLQRCSRAGLSQVQVLRA----PPGGLSVDR 203

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VLVDAPCS  G++RR PD+ + +    + +    QR+LL    + V+PGG +V++ C+++
Sbjct: 204 VLVDAPCSELGSLRRGPDLRFLKAPAVLEEFVPLQRELLALAGAQVRPGGRLVYATCTVN 263

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++E V + LR  P      P                P+  ++   D          G
Sbjct: 264 RAENQERVAEFLRQRPDFRLTRP-----------GAGWLPDACLQ---DGFFLCAPHRQG 309

Query: 430 MDGFFAVALRR 440
            D FFA  L R
Sbjct: 310 TDAFFAAVLER 320


>gi|83596072|gb|ABC25429.1| proliferating-cell nucleolar antigen [uncultured marine bacterium
           Ant4D5]
          Length = 511

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 15/249 (6%)

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
               ++++ P +I        G+ ++Q AS  +     G      VLD+C+APGGKT  L
Sbjct: 80  PSFHQVEQAPRAISQTLEHWLGLIYIQQASTGVAAPEVGVSPGQRVLDMCSAPGGKTTHL 139

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316
              +     + A ++S+ R+  L  N+ RL      ++  D  ++    LFD VL+DAPC
Sbjct: 140 AELMGDRGCLVAGEISEPRIRGLLGNVYRLGHPNILVVAGDGREFPEGALFDHVLLDAPC 199

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  GT+RR       + +  +      QR LL + +   +PGG +++  C+   +++E V
Sbjct: 200 SGEGTLRRSGGQAPNQSSSFLGYVTAAQRSLLEKAVRLTRPGGTILYVTCTFSPEENEAV 259

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           V + L   PI +E + L   + + +            EG  RI P   +          G
Sbjct: 260 VSEALGRLPIELEPLELPVPHARGVTSWDGKKFDPRVEGAARIYPHHFDSG--------G 311

Query: 433 FFAVALRRL 441
            F   LRRL
Sbjct: 312 LFLARLRRL 320


>gi|261208200|ref|ZP_05922873.1| sun family protein [Enterococcus faecium TC 6]
 gi|289566584|ref|ZP_06447005.1| fmu, rRNA SAM-dependent methyltransferase:Nop2p [Enterococcus
           faecium D344SRF]
 gi|294615827|ref|ZP_06695670.1| Fmu [Enterococcus faecium E1636]
 gi|260077457|gb|EEW65175.1| sun family protein [Enterococcus faecium TC 6]
 gi|289161629|gb|EFD09508.1| fmu, rRNA SAM-dependent methyltransferase:Nop2p [Enterococcus
           faecium D344SRF]
 gi|291591317|gb|EFF22983.1| Fmu [Enterococcus faecium E1636]
          Length = 456

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 18/254 (7%)

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
            +L        G       +S +   G+     + Q+ SA I            VLDLCA
Sbjct: 59  EELQPAPYSNEGFIGTVNGKSFLHQAGYE----YSQEPSAMIVGTAAAAKPGEKVLDLCA 114

Query: 251 APGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-- 305
           APGGK+ Q    +     +   ++  +R + L  N++R  +    +      +  P    
Sbjct: 115 APGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSG 174

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD ++VDAPCS  G  R+ P+ +     +  +     Q+++L   I  +K  G +++S 
Sbjct: 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-DMAMALSPEGWIRITPDMLEKID 424
           C+   +++EE++  ++ + P+ +E +PL  +      +       E  IRI P   +   
Sbjct: 235 CTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE- 293

Query: 425 GVSSGMDGFFAVAL 438
                  G F   L
Sbjct: 294 -------GHFVAKL 300


>gi|325290674|ref|YP_004266855.1| RNA methylase, NOL1/NOP2/sun family [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966075|gb|ADY56854.1| RNA methylase, NOL1/NOP2/sun family [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 520

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 19/252 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                       +     P    GV+++Q+ SA              VLDL AAPGGK+ 
Sbjct: 64  PWCPEGFYYAYQDYPGKHPYHQAGVYYIQEPSAMAVAAYLDPRPGDCVLDLAAAPGGKST 123

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           Q+         + + ++ ++R   L  NL+R       +      +        F  +L+
Sbjct: 124 QIASSLQGQGLLWSNEIDRKRSRILLENLERWGTARMIVSCETPENLSQALPGFFHKILL 183

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P  L       ++  A  Q+K+L    S +K GG +V+S C+   ++
Sbjct: 184 DAPCSGEGMFRKDPGALRHWSVQHVLSCAFRQQKILESAASLLKEGGTLVYSTCTFSPEE 243

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +E  +   L + P    L PL   +   ++ A+     G IR+ P  ++          G
Sbjct: 244 NEYCIINFLNNHP-DFGLEPLPKLHPDFVESALLP---GTIRLYPHRVDGE--------G 291

Query: 433 FFAVALRRLIQP 444
            F   L R  +P
Sbjct: 292 HFIARLMR--KP 301


>gi|115374634|ref|ZP_01461913.1| NOL1/NOP2/sun family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368400|gb|EAU67356.1| NOL1/NOP2/sun family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 341

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 124/311 (39%), Gaps = 32/311 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVM-- 197
           A  + +P+W      + +G E           P  I L V       E  A +L +    
Sbjct: 48  ALRASLPDWLAHHFAHEWGPE-AEDFCAHLNVPGPITLRVNRLRISREDLASRLRSEGVQ 106

Query: 198 -----LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
                     + ++    ++  L    EG++ VQD  + +   L       +VLDLCA  
Sbjct: 107 TRPGLWSPWALHIEGERPNLYGLKALQEGLFEVQDEGSQLLGLLVEARPGETVLDLCAGA 166

Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           GGKT Q    + +   + A D    RL++L     R  L    ++             D 
Sbjct: 167 GGKTLQLGAAMENQGPLLAYDPDAGRLDRLLQRCSRAGLSQVQVLRA----PPGGLSVDR 222

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VLVDAPCS  G++RR PD+ + +    + +    QR+LL    + V+PGG +V++ C+++
Sbjct: 223 VLVDAPCSELGSLRRGPDLRFLKAPAVLEEFVPLQRELLALAGAQVRPGGRLVYATCTVN 282

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++E V + LR  P      P                P+  ++   D          G
Sbjct: 283 RAENQERVAEFLRQRPDFRLTRP-----------GAGWLPDACLQ---DGFFLCAPHRQG 328

Query: 430 MDGFFAVALRR 440
            D FFA  L R
Sbjct: 329 TDAFFAAVLER 339


>gi|293552933|ref|ZP_06673588.1| Fmu [Enterococcus faecium E1039]
 gi|291602909|gb|EFF33106.1| Fmu [Enterococcus faecium E1039]
          Length = 456

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 14/227 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I            VLDLCAAPGGK+ Q    +     +   ++  +
Sbjct: 82  HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPK 141

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    +      +  P     FD ++VDAPCS  G  R+ P+ +   
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEW 201

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +  +     Q+++L   I  +K  G +++S C+   +++EE++  ++ + P+ +E +P
Sbjct: 202 TEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261

Query: 393 LNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L  +      +       E  IRI P   +          G F   L
Sbjct: 262 LTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE--------GHFVAKL 300


>gi|69245242|ref|ZP_00603320.1| Nop2p [Enterococcus faecium DO]
 gi|257880127|ref|ZP_05659780.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,230,933]
 gi|257882359|ref|ZP_05662012.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,502]
 gi|257885556|ref|ZP_05665209.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,501]
 gi|257891218|ref|ZP_05670871.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,410]
 gi|257894030|ref|ZP_05673683.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,408]
 gi|258614538|ref|ZP_05712308.1| RNA methylase [Enterococcus faecium DO]
 gi|260560264|ref|ZP_05832440.1| NOL1/NOP2/sun family protein [Enterococcus faecium C68]
 gi|293560642|ref|ZP_06677129.1| Fmu [Enterococcus faecium E1162]
 gi|293570164|ref|ZP_06681242.1| Fmu [Enterococcus faecium E1071]
 gi|294617815|ref|ZP_06697427.1| Fmu [Enterococcus faecium E1679]
 gi|294621159|ref|ZP_06700346.1| Fmu [Enterococcus faecium U0317]
 gi|314938789|ref|ZP_07846062.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133a04]
 gi|314941555|ref|ZP_07848441.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133C]
 gi|314947610|ref|ZP_07851019.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0082]
 gi|314951360|ref|ZP_07854413.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133A]
 gi|314993106|ref|ZP_07858493.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133B]
 gi|314996757|ref|ZP_07861772.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133a01]
 gi|68195917|gb|EAN10351.1| Nop2p [Enterococcus faecium DO]
 gi|257814355|gb|EEV43113.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,230,933]
 gi|257818017|gb|EEV45345.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,502]
 gi|257821412|gb|EEV48542.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,501]
 gi|257827578|gb|EEV54204.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,410]
 gi|257830409|gb|EEV57016.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,408]
 gi|260073609|gb|EEW61935.1| NOL1/NOP2/sun family protein [Enterococcus faecium C68]
 gi|291587313|gb|EFF19199.1| Fmu [Enterococcus faecium E1071]
 gi|291595926|gb|EFF27207.1| Fmu [Enterococcus faecium E1679]
 gi|291599275|gb|EFF30305.1| Fmu [Enterococcus faecium U0317]
 gi|291605393|gb|EFF34840.1| Fmu [Enterococcus faecium E1162]
 gi|298570361|gb|ADI87521.1| methyltransferase [Enterococcus faecium]
 gi|313589107|gb|EFR67952.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133a01]
 gi|313592386|gb|EFR71231.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133B]
 gi|313596466|gb|EFR75311.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133A]
 gi|313599643|gb|EFR78486.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133C]
 gi|313641898|gb|EFS06478.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133a04]
 gi|313645851|gb|EFS10431.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0082]
          Length = 456

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 14/227 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I            VLDLCAAPGGK+ Q    +     +   ++  +
Sbjct: 82  HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPK 141

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    +      +  P     FD ++VDAPCS  G  R+ P+ +   
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEW 201

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +  +     Q+++L   I  +K  G +++S C+   +++EE++  ++ + P+ +E +P
Sbjct: 202 TEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261

Query: 393 LNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L  +      +       E  IRI P   +          G F   L
Sbjct: 262 LTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE--------GHFVAKL 300


>gi|223984485|ref|ZP_03634618.1| hypothetical protein HOLDEFILI_01912 [Holdemania filiformis DSM
           12042]
 gi|223963556|gb|EEF67935.1| hypothetical protein HOLDEFILI_01912 [Holdemania filiformis DSM
           12042]
          Length = 443

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 16/260 (6%)

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
             L+       G  L      + +     +G++++Q+ SAS  V +        VLDLCA
Sbjct: 50  ASLSPSPFAREGFVLTGSETGLGNHIYHRQGLFYMQEPSASSAVTILDPQPGDWVLDLCA 109

Query: 251 APGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KK 305
           APGGK+ Q    I     + A ++   R   L  NL+RL +    I        CP    
Sbjct: 110 APGGKSTQIAARIGQSGFLIANEIDGGRARVLMSNLERLGVSEAMITHASPERLCPQLGG 169

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
             D VLVDAPCS  G  ++    L     + +      Q+K+L   +  +K  GI+V+S 
Sbjct: 170 WMDKVLVDAPCSGEGMFKKEDRALADWSVEHVRACGQRQQKILESAVFTLKEQGILVYST 229

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+   +++E+V+ + LR  P  +EL+     + +       +      RI P        
Sbjct: 230 CTYAPEENEQVIDQFLRKHP-EMELIDCGVDFGRPGLSTGLVDGAKVRRIFP-------- 280

Query: 426 VSSGMDGFFAVALRRL-IQP 444
                +G F   LR+   QP
Sbjct: 281 -MDQGEGHFVAKLRKTAAQP 299


>gi|88859583|ref|ZP_01134223.1| hypothetical protein PTD2_21407 [Pseudoalteromonas tunicata D2]
 gi|88818600|gb|EAR28415.1| hypothetical protein PTD2_21407 [Pseudoalteromonas tunicata D2]
          Length = 527

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 19/255 (7%)

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL---DLCA 250
                        +   SI +      G  ++Q+AS+ +PV      N+L+     D+ A
Sbjct: 116 WCEEGFWYQRPQAQQNLSIGNTDIHLSGAIYIQEASSMLPVFALQHQNDLTDCILLDMAA 175

Query: 251 APGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KK 305
           APG KT+Q    + +   + A + S  RL+ L  N+ RL +    +   DA  + P  ++
Sbjct: 176 APGSKTSQIAAQMKNTGVLVANEFSSSRLKSLSANMQRLGIANVALSHFDAAVFGPYMEQ 235

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            F  +L+DAPCS  GT+R+ PD L     +   + A  Q++L+      +K GG +V+S 
Sbjct: 236 SFSHILLDAPCSGEGTVRKDPDALKNWSIESNQQIAQVQKQLIESAFYALKTGGTLVYST 295

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+L   +++EV Q +L +    +E+V L+  ++   D   A + EG++ I P + +    
Sbjct: 296 CTLTPLENQEVCQYLLDTFAGQIEVVKLDDLFF---DAKRAATSEGYLHIWPQLYD---- 348

Query: 426 VSSGMDGFFAVALRR 440
                +GFF    ++
Sbjct: 349 ----TEGFFVAKFKK 359


>gi|146325689|sp|A0KKI5|RSMF_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 475

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS-- 244
              +L+ V     G  L    ES+   +      G++++Q+AS+ +PV            
Sbjct: 59  LGWQLDPVPWCDTGFWLSREDESVPLGNTAEHLSGLFYIQEASSMLPVTALFACEQTRRD 118

Query: 245 --VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
             +LD  AAPG KT Q+   + +   + A + S  RL+ L  NL R  +    +   D  
Sbjct: 119 GMLLDAAAAPGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANLQRCGVTNVGMTHFDAK 178

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            F     + FDA+L+DAPCS  G++R+  D L     + I + A  Q+ LL      +KP
Sbjct: 179 VFGQWLPETFDAILLDAPCSGEGSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHALKP 238

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  Q+++ V Q +L           L   +  +     A +PEG++ + P
Sbjct: 239 GGVLVYSTCTLSLQENQAVCQSLLDKFGAAFSFDSLADLFPAA---EQACTPEGYLHVWP 295

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            + +          GFF   LR+
Sbjct: 296 QIFDSE--------GFFVARLRK 310


>gi|282601023|ref|ZP_05980466.2| NOL1/NOP2/sun family protein [Subdoligranulum variabile DSM 15176]
 gi|282570369|gb|EFB75904.1| NOL1/NOP2/sun family protein [Subdoligranulum variabile DSM 15176]
          Length = 465

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 117/325 (36%), Gaps = 25/325 (7%)

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
            + L +   +        A    +     E L  +   E    I+   +      L  + 
Sbjct: 1   MACLCKGGYKMEFPADFAARERALLGDRFEELYRYATPEPARGITVNALRCAPDWLAARA 60

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D    A         T               P    GV++ Q+ SAS P  L      + 
Sbjct: 61  DFSVAASPFCPSAFTTAPDW------RPGRHPWHHAGVFYAQEPSASAPAALLDVQPGML 114

Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD- 300
           V DLCAAPGGKT+QL         + A +    R E LR NL+R+ +    +   D    
Sbjct: 115 VADLCAAPGGKTSQLAAALQGQGILVANEFVAARAEILRQNLERMGVTNALVTNEDTARL 174

Query: 301 -YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD VLVDAPCS  G  R+        +   +   A    ++L    + + PGG
Sbjct: 175 AAAWPGRFDRVLVDAPCSGEGMFRKEAAASAQHNDALVTHCAALGAEILENAAALLAPGG 234

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS----AYWKSIDMAMALSPEGWIRI 415
           ++V+S C+   Q+ E  +   L+  P    LV L+        ++       + E   RI
Sbjct: 235 VLVYSTCTFAPQEDEAQIASFLQRHP-EFSLVDLSDCGFGRPGEANRAPEGFAAERCRRI 293

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P         + G +G F   L++
Sbjct: 294 WP---------ADGGEGHFMAKLQK 309


>gi|161507630|ref|YP_001577584.1| putative nucleolar protein [Lactobacillus helveticus DPC 4571]
 gi|160348619|gb|ABX27293.1| putative nucleolar protein [Lactobacillus helveticus DPC 4571]
          Length = 460

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 122/305 (40%), Gaps = 25/305 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205
           +P  FKE+ +   G E       A        I +    +    A+ LN  +        
Sbjct: 4   LPVEFKEKYQKLLGDEEATEFFAAMNEESKKAIRINTLKNPVKIAYSLNEAIPDLRDAYY 63

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
            E+       P +  G  + QD +A  P  L G      VLDLCAAPGGKT +    + +
Sbjct: 64  GEISG---EDPEWVSGYVYSQDPAAMFPAALSGVKPGDKVLDLCAAPGGKTTKLGEQLEN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320
              + A ++S  R + LR N++R  +    I         P     FD +LVDAPCS  G
Sbjct: 121 EGLLVANEISGTRAKALRENVERWGIGNALITNESPEKLSPVFYDFFDVILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++P+ +     D ++     Q+ +L + +  +KP G +++S C+   ++ E++V  +
Sbjct: 181 MFRKNPEAIDYWSQDYVLTCQRRQKDILNEAVKMLKPNGRLIYSTCTFAPEEDEQIVSWL 240

Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           +           ++   ++  + +  D    L+    IR  P                F 
Sbjct: 241 VNEHDFSILDTEIKDEKISLGHPEWSDNNPELTK--TIRFWPQDGVGEGQ--------FV 290

Query: 436 VALRR 440
             L++
Sbjct: 291 AVLQK 295


>gi|313649129|gb|EFS13563.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri 2a str. 2457T]
 gi|332762898|gb|EGJ93152.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri K-671]
 gi|333018339|gb|EGK37638.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella
           flexneri K-304]
          Length = 421

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV           
Sbjct: 60  YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298
            V+D+ AAPG KT Q    + +   + A + S   ++ L  N+ R  +    +       
Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 179

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           F     ++FDA+L+DAPCS  G +R+ PD L     +   + A  QR+L+      ++PG
Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S  +L+++++E V + +  + P  VE +PL   +        AL+ EG++ + P 
Sbjct: 240 GTLVYSTYTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDCE--------GFFVARLRK 310


>gi|220919337|ref|YP_002494641.1| Fmu (Sun) domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957191|gb|ACL67575.1| Fmu (Sun) domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 410

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 145/438 (33%), Gaps = 61/438 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           L+ V+        ++       A   L  + +  V   +     +  R+ A L   L   
Sbjct: 20  LAEVLAGGA-AERVVTRALR--ARPALDAQGRAAVAEAIFGVGLWRRRLRAQLGDPLAPP 76

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
                  L+ L                             +     A+ +  +       
Sbjct: 77  ALLLAALLRDL----------------------------GRREAGVAEALAGVPAGALPP 108

Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHK 192
                   A    +P W    LE   G E     +  C+          ++ +    A +
Sbjct: 109 PRPPPAARADRFSLPGWLDAELEAAAGPEADALAAALCLPGPVALRANRLRIEPAALAAR 168

Query: 193 LNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           L A  + T    L            ++  L  + EG+  VQD  + +     G     +V
Sbjct: 169 LGAEGVRTRPGALARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQVLGDAVGARAGEAV 228

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD CA  GGKT   A  +    +V A+D    RL +LR             +        
Sbjct: 229 LDACAGAGGKTLLLAAAVGPAGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHG--AAAP 286

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            +   D  LVDAPCS  G +RR PD+ W  D     +    Q ++L +  + V+PGG +V
Sbjct: 287 AELRVDRALVDAPCSELGALRRGPDLRWRLDPAAFERLPALQARILERAAARVRPGGRLV 346

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ C+  + + E+V +    + P    + P           A  L+ +G++R  P     
Sbjct: 347 YATCTFRRAEDEDVAEAFEAAHPEFARVAPDAP--------ASTLTKDGFLRTWPH---- 394

Query: 423 IDGVSSGMDGFFAVALRR 440
                 G D FFA A  R
Sbjct: 395 ----RDGTDAFFAAAWVR 408


>gi|254251085|ref|ZP_04944403.1| tRNA and rRNA cytosine-C5-methylase [Burkholderia dolosa AUO158]
 gi|124893694|gb|EAY67574.1| tRNA and rRNA cytosine-C5-methylase [Burkholderia dolosa AUO158]
          Length = 366

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 127/344 (36%), Gaps = 21/344 (6%)

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               A          +     LR        +            W+ + +++ +      
Sbjct: 33  PPHAANARSRREWSTRCCVVFLRERDAIVAAMQDDPVARWNYRAWWIDAVKHAWPDAWQA 92

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFA 219
            ++        + L V     +    L+                        +  +PGFA
Sbjct: 93  ILAAGERQGP-LTLRVNARRTSVDAYLDTLHASGIEAAAIGRHAVRLASALPVDRIPGFA 151

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEK 278
           +G+  VQDA A +  +     + + VLD CAAPGGKT  ++  + A+V AL+    R  +
Sbjct: 152 DGIVSVQDAGAQLAAEWLDVRDGMRVLDACAAPGGKTGHILELADAEVVALESDANRAAR 211

Query: 279 LRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +  NL RL L AE           +   + FD +L D PCS++G +RRHPD+ W R   D
Sbjct: 212 IGENLARLSLDAEVRVGDAGAPDTWYDGRPFDRILADVPCSASGIVRRHPDIRWLRRATD 271

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           I      QR++L      VKPGG +++  CS+  ++ E   +    +    V L      
Sbjct: 272 IPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGESQARWFEAACEDAVRLDAPGQL 331

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +   A   +                G ++  DGFF    ++
Sbjct: 332 LPSAAPGAAHRA----------ATTGASGPNTDHDGFFYARFQK 365


>gi|325125855|gb|ADY85185.1| Putative nucleolar protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 474

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 121/301 (40%), Gaps = 16/301 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           IP+ FKE+     G+E    + D+  +           ++  A          G      
Sbjct: 4   IPDQFKEKFTGLLGQEEAGKLLDSL-AEPSKKAYRINSLKEGAVVYPQEEAVPGIPNAYY 62

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
              S    P +  G+ + QD +A  P Q         VLDLCAAPGGK+    Q +    
Sbjct: 63  GEVS-GKDPEWTAGLVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR NL+R  +    +   D+F    +    FDA+LVDAPCS  G  
Sbjct: 122 LLVANEISPSRAKILRENLERWGVSNAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+  D +     +++   A  QR++L + +  +KPGG +++S C+   ++ EE+V  +L 
Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLLD 241

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +  +    +     +     +      R  P                F  +L++ 
Sbjct: 242 EYGFKLLPIAAEKSAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKA 293

Query: 442 I 442
            
Sbjct: 294 A 294


>gi|85703240|ref|ZP_01034344.1| NOL1/NOP2/sun family protein [Roseovarius sp. 217]
 gi|85672168|gb|EAQ27025.1| NOL1/NOP2/sun family protein [Roseovarius sp. 217]
          Length = 383

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 141/451 (31%), Gaps = 81/451 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L  +          L      + +     +D+  +R  V   LR 
Sbjct: 1   MTPG--ARVAAAIEVLDRI-CAGEPAEKALTNWARGARYAG--SKDRAALRDHVFSVLRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                                     L +    +    +                  +  
Sbjct: 56  W-------QSCAARGGGETGR----ALMLGA--LRDQGIDP----------------DDL 86

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178
           F    ++       E++      A +  +PEW  ER +   G +   A           +
Sbjct: 87  FTGDGHAPEPLTEAERVLGEPDAAAMRDLPEWLWERFQASLGADAEAAARALRTRAPIML 146

Query: 179 DLTV-KFDIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
            + + +   +    +L    +           + + E    I     ++EG   +QD S+
Sbjct: 147 RVNLRRAARDEIIARLLDEGIVARPVGIAQSALHVIEGERRIAGSQCYSEGWIELQDGSS 206

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              +          VLD CA  GGK         A   A D +  R+  L     R  + 
Sbjct: 207 QAAMDAVEVPEGTRVLDYCAGGGGKVLALAARIEAAFFAHDAAPSRMRDLPARAARAGVK 266

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              +         P+  FD VL DAPCS +GT RR P+  W    D + +    Q ++L 
Sbjct: 267 VRCV-------DRPEGRFDLVLCDAPCSGSGTWRRTPEAKWALTPDRLTELTEIQAQILA 319

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
                V  GG +V++ CS+  ++++ +++    ++P    +                   
Sbjct: 320 DAAPLVTVGGQLVYATCSVLNEENQFIIESYSSNNPGWSLV------------------- 360

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              ++  P        +S   DGFF   LRR
Sbjct: 361 --GMQQWP--------ISDEGDGFFLAQLRR 381


>gi|257899800|ref|ZP_05679453.1| NOL1/NOP2/sun family protein [Enterococcus faecium Com15]
 gi|257837712|gb|EEV62786.1| NOL1/NOP2/sun family protein [Enterococcus faecium Com15]
          Length = 456

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I   +        VLDLCAAPGGK+ Q    +     + + ++  +
Sbjct: 82  HQAGYEYSQEPSAMIVGTVAAAKPGEKVLDLCAAPGGKSTQLAAQMRGKGLLVSNEIFPK 141

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    +      +  P     FD ++VDAPCS  G  R+ P+ +   
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAVKEW 201

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +  +     Q+++L   I  +K  G +++S C+   +++EE++  ++ + P+ +E +P
Sbjct: 202 TEESPLHCQKRQQEILSSAIKMLKHEGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261

Query: 393 LNSAYWKS-IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L+        +       +  +RI P   +          G F   L
Sbjct: 262 LSQTVSSGRPEWGSVDGLDKTVRIWPHENQGE--------GHFVAKL 300


>gi|320103867|ref|YP_004179458.1| Fmu (Sun) domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319751149|gb|ADV62909.1| Fmu (Sun) domain protein [Isosphaera pallida ATCC 43644]
          Length = 489

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 144/457 (31%), Gaps = 54/457 (11%)

Query: 9   LVSSHLLSCVMRKR--ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID-- 64
            V++ +L+ +  +     L   L           L +  +      V    R+   I   
Sbjct: 62  EVAAEVLAHLEERGPAGRLDQALAAALR--PRHQLGRAGRRFAAEAVMALARWQGWISPK 119

Query: 65  ------AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
                 A L    +        +++   R         D  D   +  A     R +  +
Sbjct: 120 RVPDLTARLLLAWLLDADHLPPAVRVWARSLGY-----DPHDLVPLGDAPSWPARSEAIK 174

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                 N+ +       +    R            E       K   L +         I
Sbjct: 175 RARPFQNAHVAADPWRLVPDWFRRK--------VVEPPGEHGEKAAWLELIQGIQKRPSI 226

Query: 179 DLTVKFDI-ETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASAS 231
            +  +    E    +L A  L     R       +         P F  G + VQD  + 
Sbjct: 227 WIRTQGGPPEPILSELRARGLAPWIHRRLLTAARLGPDADTPHDPLFQAGRFEVQDLGSQ 286

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
               +          D CA  GGKT  L         + A D    RL++L     R   
Sbjct: 287 AIGWVAAPKPGQRWWDACAGAGGKTLHLADLTRGKGLIVATDHHAGRLKELTRRQRRAGF 346

Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                +E D   A +  P   FD VL+DAPC++ GT RR+P+  W      I +    QR
Sbjct: 347 SHIRPLEYDLVTAPEPPPPGQFDGVLIDAPCTAMGTWRRNPEARWRTPVAAIEELGHKQR 406

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           +LL +    V PGG+++++ CSL   ++ +V+   L++ P        +    +      
Sbjct: 407 RLLERAAQGVAPGGVLIYAVCSLTIAETTDVIASFLKTRPEFAPEPFDDPLTGQPT---- 462

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                G + I P + +         DG F   LRR  
Sbjct: 463 ----SGLLWIWPHLADS--------DGHFVARLRRRA 487


>gi|300812886|ref|ZP_07093281.1| NOL1/NOP2/sun family protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496222|gb|EFK31349.1| NOL1/NOP2/sun family protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 474

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 16/304 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           IP  FKE+     G+E    + D+  +           ++  A          G      
Sbjct: 4   IPNQFKEKFTGLLGQEEAGKLLDSL-AEPSKKAYRINSLKKGAVAYPQEEAVPGIPNAYY 62

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
              S    P +  G+ + QD +A  P Q         VLDLCAAPGGK+    Q +    
Sbjct: 63  GEVS-GKDPEWTAGLVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR NL+R  +    +   D+F    +    FDA+LVDAPCS  G  
Sbjct: 122 LLVANEISPSRAKILRENLERWGVANAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+  D +     +++   A  QR++L + +  +KPGG +++S C+   ++ EE+V  +L 
Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLLD 241

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +  +    A     +     +      R  P                F  +L++ 
Sbjct: 242 EYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKA 293

Query: 442 IQPK 445
              +
Sbjct: 294 ASEE 297


>gi|257888364|ref|ZP_05668017.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,141,733]
 gi|257824418|gb|EEV51350.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,141,733]
          Length = 456

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 14/227 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I            VLDLCAAPGGK+ Q    +     + + ++  +
Sbjct: 82  HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMRGKGLLVSNEIFPK 141

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    +      +  P     FD ++VDAPCS  G  R+ P+ +   
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAVKEW 201

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +  +     Q+++L   I  +K  G +++S C+   +++EE++  ++ + P+ +E +P
Sbjct: 202 TEESPLHCQKRQQEILSSAIKMLKHEGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261

Query: 393 LNSAYWKS-IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L+        +       +  +RI P   +          G F   L
Sbjct: 262 LSQTVSSGRPEWGSVDGLDKTVRIWPHENQGE--------GHFVAKL 300


>gi|227552395|ref|ZP_03982444.1| tRNA/rRNA methyltransferase [Enterococcus faecium TX1330]
 gi|257896746|ref|ZP_05676399.1| NOL1/NOP2/sun family protein [Enterococcus faecium Com12]
 gi|293378072|ref|ZP_06624248.1| NOL1/NOP2/sun family protein [Enterococcus faecium PC4.1]
 gi|227178483|gb|EEI59455.1| tRNA/rRNA methyltransferase [Enterococcus faecium TX1330]
 gi|257833311|gb|EEV59732.1| NOL1/NOP2/sun family protein [Enterococcus faecium Com12]
 gi|292643327|gb|EFF61461.1| NOL1/NOP2/sun family protein [Enterococcus faecium PC4.1]
          Length = 456

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 14/227 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I            VLDLCAAPGGK+ Q    +     + + ++  +
Sbjct: 82  HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMRGKGLLVSNEIFPK 141

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    +      +  P     FD ++VDAPCS  G  R+ P+ +   
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAVKEW 201

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +  +     Q+++L   I  +K  G +++S C+   +++EE++  ++ + P+ +E +P
Sbjct: 202 TEESPLHCQKRQQEILSSAIKMLKHEGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261

Query: 393 LNSAYWKS-IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L+        +       +  +RI P   +          G F   L
Sbjct: 262 LSQTVSSGRPEWGSVDGLDKTVRIWPHENQGE--------GHFVAKL 300


>gi|146181141|ref|XP_001022219.2| NOL1/NOP2/sun family protein [Tetrahymena thermophila]
 gi|146144266|gb|EAS01974.2| NOL1/NOP2/sun family protein [Tetrahymena thermophila SB210]
          Length = 393

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 139/439 (31%), Gaps = 93/439 (21%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
            +   +  +L     ++    L   D+ L    V   +R    +D +        L    
Sbjct: 26  EQANPIDSMLRNYLKENK--ALGSNDRKLFTDNVYKLVRHKVYLDTI----SPKPLS--- 76

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
                                                     +L      + + ++  + 
Sbjct: 77  ---------------------------------------WEGRLDTIYTEKFATQRKNMS 97

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAV 196
                 +  P+   + L + +G+E+ + I  A      + + V       E    K   V
Sbjct: 98  LLPHVRASCPKDLFDVLCDSFGEEKAIEICMAQNLRAPLTVRVNPIKISREELIQKWRDV 157

Query: 197 MLP---------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
                        G     +  E++  LP F  G + +QD ++ +            VLD
Sbjct: 158 NKFAIKPTEFSPYGITFTTDKNENLYELPEFKRGYFEIQDEASQLAAFKVKCQIGDHVLD 217

Query: 248 LCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDY 301
            CA  GGK    A  +    ++   D     L++ +   ++  +        +       
Sbjct: 218 YCAGAGGKSLAFAPYLKGTGQIYLHDTRDYILQEAKKRFNKAGIQNVQFHTQESLNNNKN 277

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG-GI 360
              K FD V+ D PC+ TGT+RR+PD+ +    + +      Q  +  + + FVKP  G 
Sbjct: 278 KLVKKFDWVVCDVPCTGTGTLRRNPDLKYKFSRNRLKYFVDLQASVFKEALPFVKPKTGK 337

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S CSL ++++   + K  +   + V                         + TP   
Sbjct: 338 IVYSTCSLLQEENIFQITKFCKEFNLEVV-------------------DGKHFQTTPGKD 378

Query: 421 EKIDGVSSGMDGFFAVALR 439
            +       MDGFF   L+
Sbjct: 379 VE-------MDGFFCAVLQ 390


>gi|293571145|ref|ZP_06682183.1| Fmu [Enterococcus faecium E980]
 gi|291608758|gb|EFF38042.1| Fmu [Enterococcus faecium E980]
          Length = 456

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 14/227 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I            VLDLCAAPGGK+ Q    +     + + ++  +
Sbjct: 82  HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMRGKGLLVSNEIFPK 141

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    +      +  P     FD ++VDAPCS  G  R+ P+ +   
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAVKEW 201

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +  +     Q+++L   I  +K  G +++S C+   +++EE++  ++ + P+ +E +P
Sbjct: 202 TEESPLHCQKRQQEILSSAIKMLKHEGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261

Query: 393 LNSAYWKS-IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L+        +       +  +RI P   +          G F   L
Sbjct: 262 LSQTVSSGRPEWGSVDGLDKTVRIWPHENQGE--------GHFVAKL 300


>gi|270261528|ref|ZP_06189801.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
           4Rx13]
 gi|270045012|gb|EFA18103.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
           4Rx13]
          Length = 480

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 20/262 (7%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243
            +  +L  +     G  ++   E   + S      G++++Q+AS+ +PV           
Sbjct: 60  DYDWRLEPIPWCAEGFWIEREDEELRLGSAAEHLSGLFYIQEASSMLPVSALFADREKPR 119

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 120 RVLDVAAAPGSKTTQIAALMNNQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRV 179

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD +     + +   A  QR+L+      + PG
Sbjct: 180 FGAALPESFDAILLDAPCSGEGVVRKDPDAMSNWSPESVTAIAATQRELIDSAFHALAPG 239

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+S C+L+ Q+++++V  +L +    V + PL   +        AL+ EG++ + P 
Sbjct: 240 GVMVYSTCTLNAQENQQIVNGLLAAYGDAVSIEPLGELFP---GAEKALTAEGFLHVFPQ 296

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 297 IYDSE--------GFFVARLRK 310


>gi|251796173|ref|YP_003010904.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus sp. JDR-2]
 gi|247543799|gb|ACT00818.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus sp. JDR-2]
          Length = 534

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 122/306 (39%), Gaps = 28/306 (9%)

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           E  + F        +    I+ L +D      I      +  +     G   +E      
Sbjct: 19  EEFDRFMSSYEDPRVYGIRINRLKLDAGEWKSISPMGEAVRPIPWAPEGFYYEEGARP-G 77

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
             P +  G++++Q+ SA  PV+L        VLDLCAAPGGK+ Q+         + + D
Sbjct: 78  KHPHYHAGLYYIQEPSAMAPVELLDVHPGHRVLDLCAAPGGKSTQIAAKLQGSGVLVSND 137

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDV 328
            ++ R + L  N++   +    ++  +     P  +  FD +LVDAPCS  G  R+   +
Sbjct: 138 NARERTKALAKNIELAGVRNAVVLNEEPSALAPVFRGWFDRILVDAPCSGEGMFRKDESM 197

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           +   +   I + +  QR +L    + + PGG++V+S C+   +++E  + ++L   P   
Sbjct: 198 IAEWEKHSIERCSVMQRHILRDAAAMLAPGGVLVYSTCTFSPEENEAQIAELLAEYP-EF 256

Query: 389 ELVPLNSAYWKSIDMAMALSP-------------EGWIRITPDMLEKIDGVSSGMDGFFA 435
           E+ P+   Y                          G +R+ P  +E          G +A
Sbjct: 257 EVRPVRHRYGWKPGHPEWAGEAGEGLAPGQSESLAGTVRLWPHHIEGE--------GHYA 308

Query: 436 VALRRL 441
             L R 
Sbjct: 309 AVLTRK 314


>gi|121996866|ref|YP_001001653.1| Fmu (Sun) domain-containing protein [Halorhodospira halophila SL1]
 gi|121588271|gb|ABM60851.1| Fmu (Sun) domain protein [Halorhodospira halophila SL1]
          Length = 485

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 109/305 (35%), Gaps = 26/305 (8%)

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVML------PTGGIRLKE 207
           R        +    +        +         +     L             G   L +
Sbjct: 22  RYRAVIDDWQAFCDALQRPLSPCLRANTTRLTRDELDKLLRDEGWDPRPLGWQGDALLVD 81

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGA 264
                    G   G++ +Q+A++ +PVQL        VLDLCAAPG KT Q+     +  
Sbjct: 82  GGFRPGHHWGAIAGLYQIQEAASLLPVQLLDPRPGERVLDLCAAPGNKTVQVADALGNRG 141

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVDAPCSSTGTIR 323
            V A D S  RL  L   + R  +        D          FD V+VDAPCS  GT R
Sbjct: 142 TVVANDASAGRLGALGQAVKRHGVVNVSQTVRDGQGMPWAAGRFDKVVVDAPCSCEGTFR 201

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           +              +    Q++LLL+G++  +PGG VV+S C+   +++E VV   L  
Sbjct: 202 KTATAAEPTSPAFRQRLVQRQQRLLLRGMALTRPGGTVVYSTCTFAPEENEAVVAAALAR 261

Query: 384 SPIPVELVP-------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
                EL+P       L+        +          R+ P          +   GFF  
Sbjct: 262 CSGAFELIPARVAGLQLSPGLEAWDGVDFGADMAACGRLWPHH--------NDTGGFFVA 313

Query: 437 ALRRL 441
            LRR+
Sbjct: 314 LLRRV 318


>gi|323492622|ref|ZP_08097766.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio brasiliensis
           LMG 20546]
 gi|323312997|gb|EGA66117.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio brasiliensis
           LMG 20546]
          Length = 474

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 21/261 (8%)

Query: 191 HKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPV---QLFGTLNNLSV 245
            +L  V     G  +   E    + +      G++++Q+AS+ +PV    L       SV
Sbjct: 61  WQLEPVPWCEEGFWIEADESEVPLGNSAEHMSGLFYIQEASSMMPVSALFLDQQQEFTSV 120

Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           LD+ AAPG KT Q    + +   + A + S  R++ L  N++R  +    +   D   + 
Sbjct: 121 LDMAAAPGSKTTQIASKMSNQGVLVANEFSSSRVKVLHANIERCGVRNAALSNFDGRVFG 180

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FDAVL+DAPCS  GT+R+  D +     + ++  +  Q+ L+      +KPGG+
Sbjct: 181 GWLPEQFDAVLIDAPCSGEGTVRKDADAMKNWSKESVISISDTQKDLIESAFHALKPGGV 240

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L  +++++V   +  +    VE   L + +    +   AL+ EG++ I P + 
Sbjct: 241 MVYSTCTLSIEENQQVCHHLKETFGDAVEFESLATLFP---NADKALTEEGFLHIFPQVY 297

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
           +          GFF   LR+L
Sbjct: 298 DCE--------GFFVARLRKL 310


>gi|104774096|ref|YP_619076.1| putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423177|emb|CAI97973.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 474

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 122/303 (40%), Gaps = 20/303 (6%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205
           IP+ FKE+     G+E    + D+   P      +    +      +  AV         
Sbjct: 4   IPDQFKEKFTGLLGQEEAGKLLDSLAEPSKKAYRINSLKEGAVVYSQEEAVPGIPNAYYG 63

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
               +     P +  G+ + QD +A  P Q         VLDLCAAPGGK+    Q +  
Sbjct: 64  GVSGKD----PEWTAGMVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQG 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              + A ++S  R + LR NL+R  +    +   D+F    +    FDA+LVDAPCS  G
Sbjct: 120 EGLLVANEISPSRAKILRENLERWGVSNAVVTNCDSFALSARFPGFFDAILVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+  D +     +++   A  QR++L + +  +KPGG +++S C+   ++ EE+V  +
Sbjct: 180 MFRKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWL 239

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  +    A     +     +      R  P                F  +L+
Sbjct: 240 LDEYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQ 291

Query: 440 RLI 442
           +  
Sbjct: 292 KAA 294


>gi|317052704|ref|YP_004113820.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5]
 gi|316947788|gb|ADU67264.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5]
          Length = 316

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 120/324 (37%), Gaps = 33/324 (10%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA------ 195
           ++  S +P  F +RL           +             V     + A  L        
Sbjct: 1   MSYSSPLPAEFLQRLTAIVPPSWYEQVFATFHQHRTCSFRVNTLRSSTADALAELSALDI 60

Query: 196 ----VMLPTGGIRLKELPESIVSLPG-FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
               V        +     S++S    F+EG  ++Q+ S+  PV L        VLDL A
Sbjct: 61  SASPVPWCAEAFVVPHGQRSLLSTSAAFSEGRIYIQNLSSMAPVLLLNPRPGEQVLDLAA 120

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL- 306
           APGGKT  L   + +   ++A++  K R  +L+ N++            D          
Sbjct: 121 APGGKTLHLAALMENRGWISAVEAVKDRFFRLKANVEAFGASIVHTYLRDGRTVGLACPE 180

Query: 307 -FDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
            FD VL+DAPCSS           W       I ++A  Q+ LL      +KPGG +V+ 
Sbjct: 181 HFDRVLLDAPCSSEARFHADNPASWQFWSPAKIREAARKQKPLLFSAWQSLKPGGTMVYC 240

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLN-------SAYWKSIDMAMALSPEGWIRITP 417
            CS   +++E +V  +L+     V+++PL              +        E   RI P
Sbjct: 241 TCSFAPEENEAMVAALLKKYGDAVDILPLELPFANTIPGLTHWLGKEFDPRLERTRRILP 300

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
           D           MD F+   LR++
Sbjct: 301 DAF---------MDSFYLAHLRKV 315


>gi|260101298|ref|ZP_05751535.1| NOL1/NOP2/sun family protein [Lactobacillus helveticus DSM 20075]
 gi|260084883|gb|EEW69003.1| NOL1/NOP2/sun family protein [Lactobacillus helveticus DSM 20075]
          Length = 460

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 25/305 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205
           +P  FKE+ +   G E    +  A        I +    +    A+ LN  +        
Sbjct: 4   LPVEFKEKYQKLLGDEEATELFAAMNEESKKAIRINTLKNPVKIAYSLNEAIPDLRDAYY 63

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
            E+       P +  G  + QD +A  P  L G      VLDLCAAPGGKT +    + +
Sbjct: 64  GEISG---EDPEWVSGYVYSQDPAAMFPAALSGVKPGDKVLDLCAAPGGKTTKLGEQLEN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320
              + A ++S  R + LR N++R  +    I         P     FD +LVDAPCS  G
Sbjct: 121 EGLLVANEISGTRAKALRENVERWGIGNALITNESPEKLSPVFYDFFDVILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++P+ +     D ++     Q+ +L + +  +KP G +++S C+   ++ E++V  +
Sbjct: 181 MFRKNPEAIDYWSQDYVLTCQRRQKDILNEAVKMLKPNGRLIYSTCTFAPEEDEQIVSWL 240

Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           +           ++   ++  + +  D    L+    IR  P                FA
Sbjct: 241 VNEHGFSILDTEIKDEKISLGHPEWSDNNPELTK--TIRFWPQDGVGEGQ--------FA 290

Query: 436 VALRR 440
             L++
Sbjct: 291 AVLQK 295


>gi|327484132|gb|AEA78539.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           LMA3894-4]
          Length = 473

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 52  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  +VLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 112 GNAHYDTVLDMAAAPGSKTTQIAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 171

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 231

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 232 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 288

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310


>gi|14521973|ref|NP_127450.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus
           abyssi GE5]
 gi|5459193|emb|CAB50679.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
          Length = 385

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
           S+  L  F +G ++ Q   + +  ++     +  ++D+ AAPGGKT  +     +  ++ 
Sbjct: 168 SLSELKSFEKGYFYPQSLPSMVATRVLEPKEDELIIDMAAAPGGKTTHIAQLLQNRGEII 227

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D SK RL+K+  NL RL +    +I+MDA +        D +L+DAPC++ G     P
Sbjct: 228 AIDKSKNRLKKMEENLRRLGVKNVKLIQMDARNLPDLGLKADKILLDAPCTALGV---RP 284

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   R    I  +A +QR  +   I  ++ GG++V+S C+L  +++E  V+ +L+    
Sbjct: 285 KLWEERTPKHIEATARYQRAFIWAAIKSLRKGGVLVYSTCTLSYEENEGNVKFMLKK--- 341

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 +     +    +  +  +   R  P              GFF   LR++
Sbjct: 342 -----GMKLEDQQIFIGSPGIGLDKVQRFYPH--------KHNTQGFFIAKLRKV 383


>gi|86149856|ref|ZP_01068085.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|157414915|ref|YP_001482171.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|85839674|gb|EAQ56934.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|157385879|gb|ABV52194.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747553|gb|ADN90823.1| NOL1\\NOP2\\sun family protein [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 292

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 27/304 (8%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208
              R+E  Y K+ +  I  +      + +        IE    +     L    I     
Sbjct: 1   MLSRIEKLYTKDEMQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINAYCY 60

Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
                    + S+  F E  +++Q+ S+ +            VLD+CAAPGGK+      
Sbjct: 61  LFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANF 120

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           + +   +   ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+
Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
              I    +    +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++
Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236

Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             L+    + +  + L +   K+             RI P +           DGFF   
Sbjct: 237 NALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287

Query: 438 LRRL 441
           LR+L
Sbjct: 288 LRKL 291


>gi|323466403|gb|ADX70090.1| tRNA/rRNA methyltransferase [Lactobacillus helveticus H10]
          Length = 460

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 25/305 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205
           +P  FKE+ +   G E    +  A        I +    +    A+ LN  +        
Sbjct: 4   LPVEFKEKYQKLLGDEEATELFAAMNEESKKAIRINTLKNPVKIAYSLNEAIPDLRDAYY 63

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
            E+       P +  G  + QD +A  P  L G      VLDLCAAPGGKT +    + +
Sbjct: 64  GEISG---EDPEWVSGYVYSQDPAAMFPAALSGVKPGDKVLDLCAAPGGKTTKLGEQLEN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320
              + A ++S  R + LR N++R  +    I         P     FD +LVDAPCS  G
Sbjct: 121 EGLLVANEISGTRDKALRENVERWGIGNALITNESPEKLSPVFYDFFDVILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++P+ +     D ++     Q+ +L + +  +KP G +++S C+   ++ E++V  +
Sbjct: 181 MFRKNPEAIDYWSQDYVLTCQRRQKDILNEAVKMLKPNGRLIYSTCTFAPEEDEQIVSWL 240

Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           +           ++   ++  + +  D    L+    IR  P                FA
Sbjct: 241 VNEHDFSILDTEIKDEKISLGHPEWSDNNPELTK--TIRFWPQDGVGEGQ--------FA 290

Query: 436 VALRR 440
             L++
Sbjct: 291 AVLQK 295


>gi|254437547|ref|ZP_05051041.1| NOL1/NOP2/sun family protein [Octadecabacter antarcticus 307]
 gi|198252993|gb|EDY77307.1| NOL1/NOP2/sun family protein [Octadecabacter antarcticus 307]
          Length = 387

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 148/450 (32%), Gaps = 79/450 (17%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+ ++  +  ++    +    L        F     +D+  +R  V   LR  
Sbjct: 1   MTP--AARVAAAIEILEMIFDGATPEKSLTGWGRRHRFAG--SKDRAAIRDHVFQALRCR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVS--VAQILYLDVADYAVVDLAVEQAKRDKENR 118
                +               +   +R +  V ++ +  +A    V    E A+  ++  
Sbjct: 57  ASYGWLGSAETGRG------VMLGAMRAAGQVDEM-FSGIAHAPRVVEEGEDARALEDAD 109

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                                   A  + +P W     ++  G +    + +   +   +
Sbjct: 110 R-----------------------ATKNDMPAWLLPYFDSALGDD-SDGVMEILKTRAGV 145

Query: 179 DLTVKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
            L V          ++           V      +++ E    +     +  G+  +QDA
Sbjct: 146 FLRVNAARTDTMEMIDVLAQDGVTAVPVADIKNALQVTENERRVAQSDAYLAGLIELQDA 205

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           S+   +   G      VLDLCA  GGK   +   GA VTA D+  RR+  L    +R   
Sbjct: 206 SSQHAMIGLGLTAGQRVLDLCAGGGGKALAMAALGADVTAHDIDPRRMVDLAPRAERAG- 264

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               I  +          FD VLVDAPCS +GT RR P   W    + +++    Q  +L
Sbjct: 265 --VVIETVSTDQLSTLVPFDVVLVDAPCSGSGTWRRTPAAKWDLTPERLLELTQIQDDVL 322

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            Q  + V   G + ++ CS+   ++ + +Q  +++      +                  
Sbjct: 323 AQAATLVGSDGTLAYATCSVFDVENIDRIQDFIKTQGDFKMV------------------ 364

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                       + +    +G DGFF   L
Sbjct: 365 -----------SKTLRRPCAGGDGFFIAQL 383


>gi|313899981|ref|ZP_07833481.1| NOL1/NOP2/sun family protein [Clostridium sp. HGF2]
 gi|312955033|gb|EFR36701.1| NOL1/NOP2/sun family protein [Clostridium sp. HGF2]
          Length = 442

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 17/272 (6%)

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
           +   + +    D++  A +     +      + +  + + + P    G++++Q+ SA+  
Sbjct: 35  NTAKLSVDQFHDLKVCASQ--PSSICPESFYIPKDIKGLGNHPAHLAGLFYMQEPSAASA 92

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
           V++     N  VLD+CAAPGGK+ Q+         + + ++  RR + L  N++RL    
Sbjct: 93  VEVLDVQRNDWVLDMCAAPGGKSTQIAAKLQDRGFLVSNEIESRRAQILLSNMERLGFSR 152

Query: 291 EDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             I          +    FD VLVDAPCS  G  ++H   +     + ++  A  Q  +L
Sbjct: 153 CMITNTRPQQIAKEMSGWFDRVLVDAPCSGEGMFKKHSKAMDDWSEEHVLACAQRQLHIL 212

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + +K  G +V+S C+   +++E+VV   ++  P  +ELV     + +     + L 
Sbjct: 213 DSAYAALKEDGTLVYSTCTYSMEENEQVVYAFMKQHP-DMELVDCGVTFGRRGLPYLDLD 271

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E   RI P             +G F    R+
Sbjct: 272 TEKLRRIFP---------MDQGEGHFVAKFRK 294


>gi|260893130|ref|YP_003239227.1| Fmu (Sun) domain protein [Ammonifex degensii KC4]
 gi|260865271|gb|ACX52377.1| Fmu (Sun) domain protein [Ammonifex degensii KC4]
          Length = 460

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 17/257 (6%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L  V     G  + ++       P  A G++++QD +A +   L        VLDLCAAP
Sbjct: 55  LEPVPWCPEGFVVPDIGARPALHPYHAAGLYYLQDPAAMLAGVLLDPRPGEWVLDLCAAP 114

Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307
           GGK       + +   + A D + RR+  L  NL+R+ +    +++ +      +    F
Sbjct: 115 GGKATHLAARLQNCGVLVANDPNPRRVTVLARNLERIGVTCAVVLQEEPARLAQRFAGLF 174

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VLVDAPCS   T+   P+         +   A +Q ++L +     +PGG ++++ C+
Sbjct: 175 DRVLVDAPCSGEATLAHDPEARRRWSPKKLRSMAAWQGRILAEAARLTRPGGYLLYATCT 234

Query: 368 LDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
              +++EEV+   L + P      VE  PL                   +R+ P      
Sbjct: 235 FAPEENEEVIASFLEAHPEFRLVEVERHPLFDRGHPEWSRLPLPELARAVRLWPHRGPGK 294

Query: 424 DGVSSGMDGFFAVALRR 440
                   G F   L++
Sbjct: 295 --------GHFYALLQK 303


>gi|168334670|ref|ZP_02692810.1| putative RNA methylase, NOL1/NOP2/sun family protein [Epulopiscium
           sp. 'N.t. morphotype B']
          Length = 446

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 104/263 (39%), Gaps = 18/263 (6%)

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
            + E  +       +P          E     P +A G++++Q+ SA     L     + 
Sbjct: 46  TNWEAISPFAEMEAVPWCAEGRYYADERPAKHPYYAAGLYYIQEPSAMAVAALLPIEKDD 105

Query: 244 SVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLDLCAAPGGK+ Q++        + A D+S  R   L  NL+        I+  D   
Sbjct: 106 RVLDLCAAPGGKSTQVVAKLGPKGVLVANDISFSRARTLEKNLEGFGAKNTMIVSEDPKK 165

Query: 301 YC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                   FD +++DAPCS  G  R+    + + +  +I      Q ++L      +K G
Sbjct: 166 LAKLWANYFDKIIIDAPCSGEGMFRKDEKAIKSWENFEIDHFCQIQTEILESAAKMLKTG 225

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++V+S C+    ++E  +++ L +     E V +      S          G +R+ P 
Sbjct: 226 GMMVYSTCTFATAENESCIEQFLETH-ADFESVAVEIKNGLSDGFGNI----GAVRLWPH 280

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
            ++          G F   L + 
Sbjct: 281 KIKGE--------GHFVCLLIKK 295


>gi|511454|gb|AAA56914.1| unknown [Coxiella burnetii]
          Length = 265

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 25/240 (10%)

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-- 266
           P S+  LPGF EG  ++QDA+      L    NN +VLD CAAPG KT+ ++     +  
Sbjct: 41  PCSVHQLPGFNEGYCYIQDAAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKT 100

Query: 267 -TALDVSKRRLEKLRCNLDRLHLYAEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTG 320
             A+D +K+RL +++ N+ RL L  E +  +         +   +LFD +L+DAPCS+TG
Sbjct: 101 LVAIDNNKQRLNRIKENITRLGLRQEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATG 160

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            IRRHPD+   R   DI +    + +LL    + +K GG +++S CS+   ++E+V+++ 
Sbjct: 161 VIRRHPDIKLLRQPGDISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEF 220

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L +    VEL P N                G +++      +        DGF+   L +
Sbjct: 221 LSTH-DKVELSPTNV--------------HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 263


>gi|294628319|ref|ZP_06706879.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292831652|gb|EFF90001.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 335

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 91/274 (33%), Gaps = 25/274 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 22  PVRILAFDALRAVDERDAYANLVLPPLLRKAREKGDFDARDAALATELVYGTLRRQGTYD 81

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V   VE A+    +   AK V
Sbjct: 82  AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRAKFV 140

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+V++  ++                 +A +   P W    L +  G  R     + 
Sbjct: 141 NAVLRKVAQHDLDGWLEKVAPPYDDDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEDLL 200

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWV 225
           +A      + L  +    T    L       G      +         ++    EG   V
Sbjct: 201 EADNERPEVTLVARPGRATPDELLGEEAAVPGRWSPYAVRLTEGGEPGAVTAVREGRAGV 260

Query: 226 QDASAS----IPVQLFGTLNNLSVLDLCAAPGGK 255
           QD  +               +   LD CA PGGK
Sbjct: 261 QDEGSQLVALALANAPLDGPDQKWLDGCAGPGGK 294


>gi|116333508|ref|YP_795035.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
 gi|116098855|gb|ABJ64004.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
          Length = 452

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 113/304 (37%), Gaps = 20/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F  + +   G E    +  +  +P      V          L A          
Sbjct: 1   MNLPDDFVTKYQRLLGTEAAAFL-ASFDTPSLSGYRVNPTHHDLPTTLTAAPTVAYEPLG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                S         G  + Q+ SA              VLDLCAAPGGKT      +  
Sbjct: 60  HFGSVS-GRSLMHQSGAVYSQEPSAMFVGATAAPKVGERVLDLCAAPGGKTTHLASYLQG 118

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              +   +++++R++ L  N++R  +    I         P     FD VLVDAPCS  G
Sbjct: 119 TGLLVTNEINRKRVKVLAENVERFGVPNAVIFNDAPEQLSPVFPDYFDKVLVDAPCSGEG 178

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     D +   A  QR +L + +  VKPGG +++S C+   ++ E+++  V
Sbjct: 179 MFRKDPAAMTYWSLDYVNDCAARQRDILTEALKMVKPGGQLIYSTCTFAPEEDEQMMAWV 238

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAV 436
           L++ P    LVP+                   +    R+ P +++          G F  
Sbjct: 239 LQNFP-EFHLVPIQKVGGVVDARPEWADGNPELAKAARLFPHLMQGE--------GHFVA 289

Query: 437 ALRR 440
            L R
Sbjct: 290 KLER 293


>gi|229523586|ref|ZP_04412991.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           bv. albensis VL426]
 gi|229337167|gb|EEO02184.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           bv. albensis VL426]
          Length = 459

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 38  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 97

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 98  GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 157

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 158 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 217

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 218 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 274

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 275 LHIFPQMYDCE--------GFFVAKIRKLA 296


>gi|226329514|ref|ZP_03805032.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198]
 gi|225202700|gb|EEG85054.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198]
          Length = 194

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 87/196 (44%), Gaps = 9/196 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK+  N R +++  ++ V+ + +SL+ ++         + +S +D+ L++ I    LR L
Sbjct: 1   MKTSYNLRSIAAKAINQVLDQGLSLSTVIPEL-----QKNISDKDKALLQEICFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           P+++ ++  ++   L  K+  L  L+ V + Q+LY  +  +A +   V  A   K+ +  
Sbjct: 56  PQLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLYTRIPAHAALAETVNGAVALKKPQ-L 114

Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
             L+N +    +R      E  Q      + P W   R++  Y ++ +  I      P  
Sbjct: 115 KGLINGVLRQFQRQQDILNERFQNSENRFLHPSWLLARIKKAYPEQWMNIIEGNNQKPKT 174

Query: 178 IDLTVKFDIETWAHKL 193
            ++       + + +L
Sbjct: 175 TNVVTCKSASSLSRRL 190


>gi|191638489|ref|YP_001987655.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei BL23]
 gi|190712791|emb|CAQ66797.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei BL23]
 gi|327382524|gb|AEA54000.1| NOL1/NOP2/sun family protein [Lactobacillus casei LC2W]
 gi|327385721|gb|AEA57195.1| NOL1/NOP2/sun family protein [Lactobacillus casei BD-II]
          Length = 443

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 115/301 (38%), Gaps = 18/301 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +PE FKE+     G E    +  A           +   + W    +           
Sbjct: 1   MQLPEAFKEKYTRLLGDEAAAFL--ATFEAPAESGFRRDPAKPWPLDESLTEPIPWSPWG 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
                +   +   A G+ + Q+ SA     +        VLDLCAAPGGK+ QL      
Sbjct: 59  YYGKVAGNDIDHVA-GLVYSQEPSAQFVGTVAAPKPGERVLDLCAAPGGKSTQLACYLGD 117

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320
              + + +++  R + L  NL+R       +   D         ++FD +LVDAPCS  G
Sbjct: 118 TGLLVSNEINGPRSKVLSSNLERWGTRQILVTNNDPDTLAKAWPQMFDRILVDAPCSGEG 177

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  Q+++L   +  + PGG +++S C+   ++ E+++  +
Sbjct: 178 MFRKDPDAIKYWHADYPAQCAERQKQILKAAVKMLAPGGTLIYSTCTFSPEEDEQIIAWL 237

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L ++   +  +                +PE    +R+ P  L           G F   L
Sbjct: 238 LANNAFTLTPIKQYPGMEAGRPAWADGNPELAKTVRLFPHRLRGE--------GHFVAKL 289

Query: 439 R 439
           +
Sbjct: 290 K 290


>gi|88597052|ref|ZP_01100288.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190741|gb|EAQ94714.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|284925896|gb|ADC28248.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315929042|gb|EFV08281.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 292

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 122/304 (40%), Gaps = 27/304 (8%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208
              R+E  Y K+ +  I  +      + +        IE    +     L    I +   
Sbjct: 1   MLSRIEKLYTKDEMQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINVYCY 60

Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
                    + S+  F E  +++Q+ S+ +           SVLD+CAAPGGK+      
Sbjct: 61  LFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANF 120

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           + +   +   ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+
Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
              I    +    +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++
Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236

Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             L+    + +  + L +   K+             RI P +           DGFF   
Sbjct: 237 NALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287

Query: 438 LRRL 441
           LR+L
Sbjct: 288 LRKL 291


>gi|260778560|ref|ZP_05887452.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604724|gb|EEX31019.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 463

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 21/265 (7%)

Query: 191 HKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL-- 246
            +L+ V     G  +   E    + +      G++++Q+AS+ +PV       N   L  
Sbjct: 50  WQLSPVPWCEEGFWIEADESETPLGNTAEHMSGLFYIQEASSMMPVSALFQDQNDDFLSV 109

Query: 247 -DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            D+ AAPG KT Q    + +   + A + S  R++ L  N++R  +    +   D   + 
Sbjct: 110 LDMAAAPGSKTTQIAAEMDNLGVLVANEFSSSRVKVLHANIERCGVRNAALSNYDGRVFG 169

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FDAVL+DAPCS  GT+R+  D +     D ++  A  Q+ L+      +KPGG+
Sbjct: 170 GWLPEQFDAVLIDAPCSGEGTVRKDADAMKNWSKDSVLSIADTQKDLIESAFYALKPGGV 229

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L  +++++V   +       VE  PL+S + +S     AL+ EG++ I P M 
Sbjct: 230 MVYSTCTLSIEENQQVCLHLKEQFGDLVEFEPLDSLFPES---EKALTEEGFLHIFPQMY 286

Query: 421 EKIDGVSSGMDGFFAVALRRLIQPK 445
           +          GFF   +++L   +
Sbjct: 287 DCE--------GFFVARMKKLGSTE 303


>gi|57640295|ref|YP_182773.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
 gi|57158619|dbj|BAD84549.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           kodakarensis KOD1]
          Length = 312

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 19/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E    +     +P          +++  +P    G+ + Q+AS+ IP  +        VL
Sbjct: 53  ERLKEEFELEPIPWVREGFFINVDNLARVPEHGLGLVFGQEASSMIPPVVLDPKPGELVL 112

Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-C 302
           D+ AAPG K    AQ + +   + A D ++ R   L  NL+R+ +    +   D   +  
Sbjct: 113 DMAAAPGSKTGQIAQYMQNEGCIIANDPNRDRANVLIANLNRMGVLIARVTTRDGASFAR 172

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            +  FD VL+DAPCSS G IR+    L       +VK    Q++L+L G   +KPGG++V
Sbjct: 173 FENTFDRVLLDAPCSSVGMIRKSWRFLREWREKAVVKYMNVQKRLILAGYRALKPGGVMV 232

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPL----NSAYWKSIDMAMALSPEGWIRITPD 418
           +S C++D  ++EEVV  +LR +   +E + L    +    +      +   +  +RI P+
Sbjct: 233 YSTCTIDPLENEEVVDYLLRKTDARLERIDLPVKTSEPVLEWEGKEYSEELKKALRIHPN 292

Query: 419 MLEKIDGVSSGMDGFFAVALRRLIQP 444
                    +  + FF     ++++P
Sbjct: 293 D--------NDTEAFFIA---KIVKP 307


>gi|108760909|ref|YP_631923.1| RsmB/NOP family methyltransferase [Myxococcus xanthus DK 1622]
 gi|108464789|gb|ABF89974.1| methyltransferase, RsmB/NOP family [Myxococcus xanthus DK 1622]
          Length = 428

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 148/438 (33%), Gaps = 36/438 (8%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
           +   L   L     ++    L  +++      V    R    +D     +  +       
Sbjct: 3   RGEPLKAALANALREA--NGLGGQERRFAAMAVRELSRHQRLLDLAARLLGHTMGKVGLT 60

Query: 81  SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--RHFAKLVNSILRRVSREKIEL 138
             Q L+R ++ + ++       +                    + V       +      
Sbjct: 61  EDQALVRYALWRRIFCGEGWARIGPEVRLPGPVRPRTIKDDLLQRVVEQPLPEAPLPESQ 120

Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--YIDLTVKFDIETWAHKLNAV 196
            +R+A     P W  +RL   Y ++ +  +  +       +  +      +     L   
Sbjct: 121 TERLAIRYSFPNWLVQRLAQVYPEDVLEGLLASLDEEPSLHFRVRPPGTRDAVLAALKEE 180

Query: 197 MLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN----LSV 245
            +    +       R+ +    +        G   VQD  + +  +L           +V
Sbjct: 181 GVNAEPVAAAPDAVRVTDSSHRVFETRMMKSGRLQVQDVGSQLISELCRPREGSLEGFTV 240

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            D+CA  GGKT   A  +    +V A D S+RRL + R  +    L              
Sbjct: 241 ADVCAGAGGKTLALADFVGPQGRVLAGDRSRRRLAEARERVRHFSLRQVA-----FPHPL 295

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P    D +L+DAPCS TG++ R PD  W     +I K    Q +LL +     KPG ++V
Sbjct: 296 PLSDADVLLIDAPCSGTGSLAREPDQKWKLTAQEIAKYQATQSELLDEVSRQAKPGALIV 355

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS+  ++ E VV+  L   P    L P+            A  P  +++  P  +  
Sbjct: 356 YATCSVMPEEDEAVVEAFLAKHP-DFTLEPVEDVLGAERAALAAQGP--YLKALPPKVPG 412

Query: 423 IDGVSSGMDGFFAVALRR 440
                    GFFA  LRR
Sbjct: 413 G--------GFFAARLRR 422


>gi|260587786|ref|ZP_05853699.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583]
 gi|331083788|ref|ZP_08332897.1| hypothetical protein HMPREF0992_01821 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542051|gb|EEX22620.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583]
 gi|330403213|gb|EGG82773.1| hypothetical protein HMPREF0992_01821 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 463

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 19/261 (7%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +   +     G  +     +    P +  G++++Q+ SA  P           VLDLCAA
Sbjct: 54  EKEEIPWVENGYYIHGGEGNPARHPYYFAGLYYLQEPSAMTPASRLEIQPYDKVLDLCAA 113

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKL 306
           PGGK  +    +     + A D+S  R + L  NL+        +   E         + 
Sbjct: 114 PGGKATELVGRLQGKGFLLANDLSNSRAKALLKNLELTGAPNFYVTSEEPAKLVKSFPEF 173

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L+DAPCS  G   + P +            A  Q++L++QG   +KPGG +++S C
Sbjct: 174 FDKILIDAPCSGEGMFHKEPKMAEYWLEKSPDYYAEIQKELIVQGAQMLKPGGKMLYSTC 233

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE------GWIRITPDML 420
           +  K+++EE +  +L        L PL    +         S E        +RI P  +
Sbjct: 234 TFSKKENEETIAYLLEQCEDMEVLAPLGYGGFSEGFPLEGKSEEMCSQLKKCVRIFPHKM 293

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                      G F   L++ 
Sbjct: 294 AGE--------GHFLALLQKK 306


>gi|167768018|ref|ZP_02440071.1| hypothetical protein CLOSS21_02561 [Clostridium sp. SS2/1]
 gi|167710347|gb|EDS20926.1| hypothetical protein CLOSS21_02561 [Clostridium sp. SS2/1]
          Length = 462

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 19/253 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
             T      +  E     P +  G++++Q+ SA  P           VLDLC APGGK+ 
Sbjct: 67  PWTDNGFYVDREEKPSKHPYYHAGLYYIQEPSAMTPASYLPVEPGDRVLDLCGAPGGKST 126

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLV 312
           +    ++    + + DVS  R + L  N++   +  + I+  +A    P     F+ +L+
Sbjct: 127 ELGAKLMGEGLLVSNDVSISRTKALIRNIEMFGIRNDMILCTEAKYLVPSMTGFFNKILI 186

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+  + +           A  QR+++   I  + PGG++++S C+   ++
Sbjct: 187 DAPCSGEGMFRKGNNEIKNWQQKGSEPYAKLQREIVDDAIKLLAPGGMLLYSTCTFSPEE 246

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-----LSPEGWIRITPDMLEKIDGVS 427
           +E+V++ +L  +   + LVP+                     +  IR+ P  ++      
Sbjct: 247 NEQVIEYLLEKN-EDLSLVPMKMCEGFDNGHPEWTLTGREDIKQCIRLWPHKIKGE---- 301

Query: 428 SGMDGFFAVALRR 440
               G F   L++
Sbjct: 302 ----GHFLALLKK 310


>gi|260437130|ref|ZP_05790946.1| NOL1/NOP2/sun family protein [Butyrivibrio crossotus DSM 2876]
 gi|292810442|gb|EFF69647.1| NOL1/NOP2/sun family protein [Butyrivibrio crossotus DSM 2876]
          Length = 448

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 113/307 (36%), Gaps = 25/307 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +PE +          +   +  ++        L V     +    +         I  
Sbjct: 1   MQLPEKYVNS-MKELLADEFDSYMESFNEKRLYGLRVNTAKISVEDFMKICPFHIERIPW 59

Query: 206 KEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
                     +     P +  G++++Q+ SA  P  +        VLDLCAAPGGK+ +L
Sbjct: 60  IPNGFYYSENDKPAKHPYYFAGLYYLQEPSAMTPAYVLPVNKGDKVLDLCAAPGGKSTEL 119

Query: 260 IVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314
                    + + D+S  R + L  N++   +    I          K    FD +LVDA
Sbjct: 120 GAKLSGTGLLVSNDISASRAKALVKNIEVFGIGNVVITCEYPEKLAAKFPEFFDKILVDA 179

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+   ++ + + +     +  QR +L    + +K GG +++S C+  K ++E
Sbjct: 180 PCSGEGMFRKDNKLIKSWEQEGPEFYSPIQRGILNSAAAMLKEGGYILYSTCTFSKMENE 239

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           + ++  L       ELV +           M  +    +R+ P  L+          G F
Sbjct: 240 DNIRDFLDRH-SDFELVKIFDYEGFVRAYGMNEA----VRLFPHHLKGE--------GHF 286

Query: 435 AVALRRL 441
              L + 
Sbjct: 287 VALLHKK 293


>gi|328466026|gb|EGF37203.1| putative nucleolar protein [Lactobacillus helveticus MTCC 5463]
          Length = 460

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 123/305 (40%), Gaps = 25/305 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205
           +P  FKE+ +   G E       A        I +    +    A+ LN  +        
Sbjct: 4   LPVEFKEKYQKLLGDEEATEFFAAMNEESKKAIRINTLKNPVKIAYSLNEAIPDLRDAYY 63

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
            E+       P +  G  + QD +A  P  L G      VLDLCAAPGGKT +    + +
Sbjct: 64  GEISG---EDPEWVSGYVYSQDPAAMFPAALSGVKPGDKVLDLCAAPGGKTTKLGEQLEN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320
              + A ++S  R + LR N++R  +    I         P     FD +LVDAPCS  G
Sbjct: 121 EGLLVANEISGTRAKALRENVERWGIGNALITNESPEKLSPVFYDFFDVILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++P+ +     D ++     Q+ +L + +  +KP G +++S C+   ++ E++V  +
Sbjct: 181 MFRKNPEAIDYWSQDYVLTCQRRQKDILNEAVKMLKPNGRLIYSTCTFAPEEDEQIVSWL 240

Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           +           ++   ++  + +  D    L+    IR  P                FA
Sbjct: 241 VNEHGFSILDTEIKDEKISLGHPEWSDNNPELTK--TIRFWPQDGVGEGQ--------FA 290

Query: 436 VALRR 440
             L++
Sbjct: 291 AVLQK 295


>gi|317498388|ref|ZP_07956683.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894282|gb|EFV16469.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 453

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 19/253 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
             T      +  E     P +  G++++Q+ SA  P           VLDLC APGGK+ 
Sbjct: 58  PWTDNGFYVDREEKPSKHPYYHAGLYYIQEPSAMTPASYLPVEPGDRVLDLCGAPGGKST 117

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLV 312
           +    ++    + + DVS  R + L  N++   +  + I+  +A    P     F+ +L+
Sbjct: 118 ELGAKLMGEGLLVSNDVSISRTKALIRNIEMFGIRNDMILCTEAKYLVPSMTGFFNKILI 177

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+  + +           A  QR+++   I  + PGG++++S C+   ++
Sbjct: 178 DAPCSGEGMFRKGNNEIKNWQQKGSEPYAKLQREIVDDAIKLLAPGGMLLYSTCTFSPEE 237

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-----LSPEGWIRITPDMLEKIDGVS 427
           +E+V++ +L  +   + LVP+                     +  IR+ P  ++      
Sbjct: 238 NEQVIEYLLEKN-EDLSLVPMKMCEGFDHGHPEWTLTGREDIKQCIRLWPHKIKGE---- 292

Query: 428 SGMDGFFAVALRR 440
               G F   L++
Sbjct: 293 ----GHFLALLKK 301


>gi|239631422|ref|ZP_04674453.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525887|gb|EEQ64888.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 443

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 116/301 (38%), Gaps = 18/301 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +PE FKE+     G E    +  A           +   + W    +           
Sbjct: 1   MQLPEAFKEKYTRLLGDEAAAFL--ATFEAPAESGFRRDPAKPWPLDESLTEPIPWSPWG 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
                +   +   A G+ + Q+ SA     +    +   VLDLCAAPGGK+ QL      
Sbjct: 59  YYGKVAGNDIDHVA-GLVYSQEPSAQFVGTVAAPKSGERVLDLCAAPGGKSTQLACYLGD 117

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320
              + + +++  R + L  NL+R       +   D         ++FD +LVDAPCS  G
Sbjct: 118 TGLLVSNEINGPRSKVLSGNLERWGTRQILVTNNDPDTLAKAWPQMFDRILVDAPCSGEG 177

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  Q+++L   +  + PGG +++S C+   ++ E+++  +
Sbjct: 178 MFRKDPDAIQYWHADYPAQCAERQKQILKAAVKMLAPGGTLIYSTCTFSPEEDEQIIAWL 237

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L ++   +  +                +PE    +R+ P  L           G F   L
Sbjct: 238 LANNAFTLTPIKQYPGMEAGRPAWADGNPELAKTVRLFPHRLRGE--------GHFVAKL 289

Query: 439 R 439
           +
Sbjct: 290 K 290


>gi|149923973|ref|ZP_01912358.1| Fmu (Sun) domain protein [Plesiocystis pacifica SIR-1]
 gi|149815151|gb|EDM74702.1| Fmu (Sun) domain protein [Plesiocystis pacifica SIR-1]
          Length = 467

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 102/235 (43%), Gaps = 20/235 (8%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSK 273
            +  G+  +Q+  + +P QL G      VLDLCAAPG K+AQL  + A   +V A D S 
Sbjct: 75  AYLAGLLHIQEEVSMLPAQLLGVQPGERVLDLCAAPGNKSAQLAAALANAGRVIANDRSM 134

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            R+   R  L+RL L       +DA  Y      +D VLVDAPCS  GT R+     W  
Sbjct: 135 GRMRACRQVLERLGLVNVATTVLDARQYPHAGAPYDRVLVDAPCSGEGTCRK--LRRWRV 192

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
           D     + A  Q  +L + +   +PGG VV+S C+   +++E VV  +LR       L  
Sbjct: 193 DEAGSRRMAAVQLDILREAVKLCRPGGRVVYSTCTFAPEENECVVDALLRGGAPVRSLPA 252

Query: 393 LNSAYWKSIDMAMALSP------EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +     +            E  +RI P   +          GFF   L RL
Sbjct: 253 RVPGFRGEPGLRAWAGRELDPQLEHALRIWPHHNDSG--------GFFIAVLERL 299


>gi|84500800|ref|ZP_00999035.1| possible NOL1/NOP2/sun family protein [Oceanicola batsensis
           HTCC2597]
 gi|84390867|gb|EAQ03285.1| possible NOL1/NOP2/sun family protein [Oceanicola batsensis
           HTCC2597]
          Length = 392

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 135/452 (29%), Gaps = 74/452 (16%)

Query: 1   MKSGMNARLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR+  ++ LL  V+         L      + +     RD+  +R  V   LR 
Sbjct: 1   MTP--EARIATAADLLD-VILAGDPAERALTDWARRNRYAG--SRDRAAIRDHVYDALRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 +                   L +    +                 A        
Sbjct: 56  RRSFALLGGGETGRG-----------LMLG-YLLSEGRDPRDVFTGQGYGPAPLTGAEAA 103

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                 +   R +   +            P+W   +LE   G +R   I+        + 
Sbjct: 104 ALAETPAEALRAAPRPVACDM--------PDWLWPQLETSLG-DRTETIAAILRRRAPVF 154

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIR----------LKELPESIVSLPGFAEGVWWVQDAS 229
           L V       A    A+       R          + +    +     + EG+  +QDA+
Sbjct: 155 LRVNLRKTDRAAARAALAAEEIVTRPHALAETALEVTDGARRVAMSRAYDEGLVELQDAA 214

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT-AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +            LSVLD CA  GGKT A         TA D    R+  L     R  +
Sbjct: 215 SQAVAAALPLREGLSVLDYCAGGGGKTLAIAGRIDGTFTAHDADAGRMADLPERARRAGI 274

Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                         P+  FD VL D PCS +G  RR P   W    + + +    Q  +L
Sbjct: 275 AVTLTD-------RPRGPFDLVLCDVPCSGSGAWRRSPSGKWALSQETLDRLNATQLDIL 327

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    V PGG + +  CSL + +++E V                     ++ D    ++
Sbjct: 328 KRAAGLVAPGGTLAYVTCSLLRAENQERVAAF------------------RATDPGWRIA 369

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E   +  PD          G DGF+   L R
Sbjct: 370 AE--RQFLPD---------EGGDGFYLACLSR 390


>gi|116494978|ref|YP_806712.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
 gi|227535017|ref|ZP_03965066.1| tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|116105128|gb|ABJ70270.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
 gi|227187332|gb|EEI67399.1| tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 443

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 15/226 (6%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277
           G+ + Q+ SA     +        VLDLCAAPGGK+ QL         + + +++  R +
Sbjct: 73  GLVYSQEPSAQFVGTVAAPKPGERVLDLCAAPGGKSTQLACYLGDTGLLVSNEINGPRSK 132

Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +   D         ++FD +LVDAPCS  G  R+ PD +     D
Sbjct: 133 VLSGNLERWGTRQILVTNNDPDTLAKAWPQMFDRILVDAPCSGEGMFRKDPDAIQYWHAD 192

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  Q+++L   +  + PGG +++S C+   ++ E+++  +L ++   +  +    
Sbjct: 193 YPAQCAERQKQILKAAVKMLAPGGTLIYSTCTFSPEEDEQIIAWLLANNAFTLTPIKQYP 252

Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                       +PE    +R+ P  L           G F   L+
Sbjct: 253 GMEAGRPAWADGNPELAKTVRLFPHRLRGE--------GHFVAKLK 290


>gi|229514909|ref|ZP_04404369.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           TMA 21]
 gi|229347614|gb|EEO12573.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           TMA 21]
          Length = 459

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 38  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 97

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 98  GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 157

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 158 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 217

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 218 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 274

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 275 LHIFPQMYDCE--------GFFVAKIRKLA 296


>gi|114771069|ref|ZP_01448509.1| NOL1/NOP2/sun family protein [alpha proteobacterium HTCC2255]
 gi|114548351|gb|EAU51237.1| NOL1/NOP2/sun family protein [alpha proteobacterium HTCC2255]
          Length = 387

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 138/394 (35%), Gaps = 39/394 (9%)

Query: 1   MKSGMNARLVS-SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR  +   +L  ++         L +    + F     +D+  +R +V  +LR 
Sbjct: 1   MTPS--ARYAASISILDKIIA-GAPAERELTIWARGNRFAG--SKDRAAIRDLVYDSLRN 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           L   +                         V       V      +  +E        + 
Sbjct: 56  LRSYEHFSGLSGAR---------------GVF------VGRLISKNEEIE---SIFNGQG 91

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
           +  +  + + + +    +     A    IP+W  E+  N +    + + +   +      
Sbjct: 92  YGPVCLTDIEKNTVNTKKNDMPYAVQMDIPDWLSEKFGNIHNYNILKSRAPIDLRVNIKK 151

Query: 180 LTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
           +++K  I        +   + L    +R+K     I     +  G+  +QDA +   V  
Sbjct: 152 ISLKSAISELKKDNIETEKLDLVDTALRVKGETRKIPQTKLYLNGLIELQDAGSQALVAQ 211

Query: 237 FGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                N  VLD CA  GGK    A    +    +A D ++ RL++L+    R       +
Sbjct: 212 LDCPKNGKVLDYCAGGGGKTLAIASRTFNNVSFSAYDKNQSRLKELKIRAQRAG---IKV 268

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
             +        + +D V+VD PCS +G+ RR PD  W      +++    Q ++L     
Sbjct: 269 DLLKNDPVIGIEKYDLVVVDVPCSGSGSWRRSPDAKWKFTEQRLIELMAIQTEILENTAD 328

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            V  GG + +  CSL   ++EE V K +  +   
Sbjct: 329 LVATGGTLAYMTCSLFSCENEEQVNKFILKNKSW 362


>gi|298675861|ref|YP_003727611.1| RNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298288849|gb|ADI74815.1| RNA methylase, NOL1/NOP2/sun family [Methanohalobium evestigatum
           Z-7303]
          Length = 292

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 13/226 (5%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277
           G + VQ++ + IP      +    VLD+CAAPG KT+Q+   + +  ++ A D+SK R+ 
Sbjct: 74  GKYHVQESVSGIPPLALNPIPYDRVLDMCAAPGSKTSQMSVLMENTGEILANDISKNRIR 133

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
            L  N+ RL      ++E D  +   K  FD VLVDAPCS+ G  R++ D+L   DT+ I
Sbjct: 134 SLLSNVSRLGCVNVQVLERDGRNIPEKSKFDRVLVDAPCSAEGNARKNNDLLNGADTETI 193

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL--VPLNS 395
            + +  Q  LL +     K GG VV+S C+   +++E VV K L    +      +P + 
Sbjct: 194 TRISELQTSLLKKAFRLCKTGGTVVYSTCTFAPEENEIVVSKFLNHGKLEKPDLNLPHSL 253

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +  D  +    E  IR+ P  L+          G F    +++
Sbjct: 254 GLSEWNDKKLGKELENCIRVYPHQLDSG--------GIFVAKFKKM 291


>gi|317486052|ref|ZP_07944905.1| ribosomal RNA small subunit methyltransferase B [Bilophila
           wadsworthia 3_1_6]
 gi|316922679|gb|EFV43912.1| ribosomal RNA small subunit methyltransferase B [Bilophila
           wadsworthia 3_1_6]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 142/391 (36%), Gaps = 52/391 (13%)

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR- 130
            +  +   S++ ++ ++  ++LYLD +  +A V  AV+  +     +  +++ N +LR  
Sbjct: 2   KAPEKLPASMKLMIGIAAYELLYLDRIPAHASVSAAVDAVRARFG-QGLSRVANGVLRSL 60

Query: 131 --------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
                               + ++R++    +P W  E     YG E+    + A     
Sbjct: 61  IRLSESEDLKAFAFYESRIKDPMERLSVFHSVPRWMLELWTKGYGPEKAETFARAVSVVP 120

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW------WVQDASA 230
              + V    + W    + +      + +  +  +  + P +                S 
Sbjct: 121 SPCVRVNAARDEWEALRDFLCKEGEAVGISGVRFAPGTQPEYMRDYLRQGRLSIQGAGSQ 180

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLY 289
            +   L        V D CA  GGKT  L+  G  V A  D  + RL  +R +  RL L 
Sbjct: 181 LVLEALDAPRWEGPVWDACAGRGGKTLALVELGVPVLAASDTYQPRLRGMRDDAKRLVLK 240

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              +    A +   +     +L+D PCS  GT+ RHPD+   R    +      QR++L 
Sbjct: 241 TPPLFCASAAEPALRGTPRTILLDVPCSGLGTLARHPDLRTLRTPGQVAGLVDLQRRILD 300

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
              S++  GG + +  C+++  ++E  +   L  +P                      S 
Sbjct: 301 AVWSYLPSGGHLAYITCTMNPAENEGQIDAFLARTPGA--------------------SL 340

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           E   + TPD          G D  +   L++
Sbjct: 341 EKQWQSTPDAF--------GSDLMYGAMLKK 363


>gi|153824817|ref|ZP_01977484.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-2]
 gi|153830903|ref|ZP_01983570.1| NOL1/NOP2/sun family protein [Vibrio cholerae 623-39]
 gi|148873618|gb|EDL71753.1| NOL1/NOP2/sun family protein [Vibrio cholerae 623-39]
 gi|149741535|gb|EDM55565.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-2]
          Length = 503

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 82  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340


>gi|254226556|ref|ZP_04920138.1| NOL1/NOP2/sun family protein [Vibrio cholerae V51]
 gi|125620892|gb|EAZ49244.1| NOL1/NOP2/sun family protein [Vibrio cholerae V51]
          Length = 503

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 82  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340


>gi|283954082|ref|ZP_06371607.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794361|gb|EFC33105.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 292

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 122/304 (40%), Gaps = 27/304 (8%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIR 204
              R+E  Y K+ +  I  +      + + V           E +  +            
Sbjct: 1   MLSRIEKLYTKDEMQNILSSFAQEKNVCVFVNTLKSSVKELEEEFLKQGLKFRKINTYCY 60

Query: 205 LKELPESI--VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
           L E  + +   S+  F E  +++Q+ S+ +           SVLD+CAAPGGK+      
Sbjct: 61  LFEAKDKVILSSMKAFNEFKFYIQNYSSYLCALNLEVKAGQSVLDICAAPGGKSINLANF 120

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           + +   +   ++SK R   L+ NL    + A   +             FD +L+DAPCS+
Sbjct: 121 MQNTGYLACNELSKDRFFTLQKNLKNYGVNAKIFMKNGKNIGNLCPLKFDKILLDAPCST 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
              I    +    +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++
Sbjct: 181 FAKIGFDLE----KSYQEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236

Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             L+    + +  + L     K+      +      RI P +           DGFF   
Sbjct: 237 NALKSEFKLELLDIDLEDVQAKAGHSEEFVEISKCRRILPSLDY---------DGFFIAK 287

Query: 438 LRRL 441
           LR+L
Sbjct: 288 LRKL 291


>gi|169351016|ref|ZP_02867954.1| hypothetical protein CLOSPI_01793 [Clostridium spiroforme DSM 1552]
 gi|169292078|gb|EDS74211.1| hypothetical protein CLOSPI_01793 [Clostridium spiroforme DSM 1552]
          Length = 440

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 24/298 (8%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-----AVMLPTGGIRLKE 207
            E+      K+       A +        +    +     L                   
Sbjct: 5   FEQRMQMLLKDEYQNFKAALLKKPIKAFYLNPKKKNVIQHLEYQYLTKHPYINDAYFYDY 64

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264
               +   P F  G++++Q+ SA           +  +LD+CAAPGGKT      +    
Sbjct: 65  DSYPLGKHPYFNCGLYYIQEPSAMAVASSVEFNKDDYILDMCAAPGGKTCYVASRLSDEG 124

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTI 322
            + A D++K R E L  N++R  +    +   D      +    FD +++DAPCS  G  
Sbjct: 125 LMIANDINKLRAEILSENIERFGITNTIVTNCDPVKLDKQFNCFFDKIILDAPCSGEGMF 184

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+    + T   D I   A  QR+L+      +K  GI+++S C+   +++EE V  ++ 
Sbjct: 185 RKLDTAIETWSIDKIYDCAKIQRRLINAAYKMLKDDGILIYSTCTYSLEENEEQVDYMI- 243

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + + +EL+ +     K   M+   + +  +R+ P + +            F   L++
Sbjct: 244 -NELNMELLEIK----KQPGMSSGYNNDKVVRMYPHINKGEGQ--------FIALLKK 288


>gi|222834339|gb|EEE72816.1| predicted protein [Populus trichocarpa]
          Length = 359

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 144/368 (39%), Gaps = 39/368 (10%)

Query: 97  DVADYAVVDLAVEQ-AKRDKENRHFAKLVNSILRRVSRE-KIELLQRIAGISIIPEWFKE 154
            V  + +V+      A          + + +   R           +   +   P W+  
Sbjct: 5   HVPAFTLVNRRWRLQAGAHARPVRLHQCLPAPFLRERDALVAATDDQPQAVWNHPAWWIA 64

Query: 155 RLENFYGKERVLAISDACISPLY-IDLT-VKFDIETWAHKLNA----VMLPTGGIRLKEL 208
           RL   +       +      P   + +   + D +++   L A     +         + 
Sbjct: 65  RLRKDHPDHWQAILQANNEQPPMTLRVNRQQTDRQSYQAALQAMDVPSLAVADSGLQLQQ 124

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLF------GTLNNLSVLDLCAAPGGKTAQLIVS 262
              + SLPGF EG+  VQDA+A +   L            L VLD CAAPGGKTA L+  
Sbjct: 125 ALPVQSLPGFDEGLASVQDAAAQLAAPLLLQGLEQPAGRALRVLDACAAPGGKTAHLLEY 184

Query: 263 GAKVT----ALDVSKRRLEKLRCNLDRLHLYAEDIIE----MDAFD--YCPKKLFDAVLV 312
            A  T    AL++   R  ++   L RL L A  ++      D +    C  + FDA+L+
Sbjct: 185 AAPQTLEVTALEIDAERAARIADTLGRLRLQARVVVADASRPDQWFDAQCGGQRFDAILL 244

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPC+++G +RR PDV W R   D+ + A  Q +LL      ++PGG +++  CS+ +++
Sbjct: 245 DAPCTASGIVRRQPDVRWLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLYCTCSVFREE 304

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
            E  VQ  +  +     L           D A  L+                      DG
Sbjct: 305 GEAQVQAFVTRNSEARTLAAPGHLIPGKADKAGMLADN---------------ALGDHDG 349

Query: 433 FFAVALRR 440
           FF   L++
Sbjct: 350 FFYALLQK 357


>gi|254286435|ref|ZP_04961393.1| NOL1/NOP2/sun family protein [Vibrio cholerae AM-19226]
 gi|150423602|gb|EDN15545.1| NOL1/NOP2/sun family protein [Vibrio cholerae AM-19226]
          Length = 503

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 82  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  +    + 
Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIQRCGIRNTALS 201

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340


>gi|329889247|ref|ZP_08267590.1| NOL1/NOP2/sun family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844548|gb|EGF94112.1| NOL1/NOP2/sun family protein [Brevundimonas diminuta ATCC 11568]
          Length = 431

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 147/447 (32%), Gaps = 50/447 (11%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           ++  + + R     +L      + +      D+  +   V   LR   R+ A +      
Sbjct: 13  IIDSISQGRQPADAVLKAWSQQNRYAG--SGDRRAIAERVYQVLRARGRLSAFMGGRQDG 70

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ-AKRDKENRHFAKLVNSILRRVS 132
                       L V       L V D A ++             R  +K          
Sbjct: 71  R----------ALIVGA-----LSVLDGATLEEIEGLYNGEGYGPRPLSKHERG------ 109

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH- 191
           R              +P++    L      +R     +       +DL V     T    
Sbjct: 110 RVMAGEDAVDLAEVALPDFVTADL-KAVHGDRWREEVEGLSGRAPVDLRVNSLRATMEEV 168

Query: 192 ----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                          +   G     E   ++  L GF  G + +QD ++ +   L G   
Sbjct: 169 EVELRDAGLSPQRTELSGWGLRLDAEPAPNVQPLDGFQNGHFEIQDEASQVVGWLSGAFP 228

Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED--IIEM 296
             +V+D CA  GGKT    Q +     + A DVS +RL+ ++  L R  + A+   +   
Sbjct: 229 GATVVDYCAGGGGKTLGLVQAMQGQGALIACDVSAKRLDNVKPRLARAGVEADLRLLGTN 288

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                      D VLVDAPCS +G  RR P+  W    +++ +    Q ++L Q    V+
Sbjct: 289 GGGVEDLNGQADVVLVDAPCSGSGAWRRRPEDSWRLTAEEVARLHALQLRILGQATKLVR 348

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG + +  CS+         +    ++      +            +  L+  G  R+T
Sbjct: 349 PGGRLAYVTCSVLGA------ENEATAAAFEAAHLDFKPVPVADAAHSADLTEAGRERLT 402

Query: 417 P---DMLEKIDGVSSGMDGFFAVALRR 440
                   ++   ++G DGFF     R
Sbjct: 403 ALAQGNQLRLSPAATGTDGFFIALFER 429


>gi|319745008|gb|EFV97336.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae ATCC 13813]
          Length = 436

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 23/299 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E+      K+   A  D+               E      NA+     G   
Sbjct: 1   MKLPNEFIEK-YQTILKDEAEAFFDSFEQKPISAYRTNPLKEKQLDFPNAIPSTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +SI    G    + + Q+ +A I  Q+      + VLDL AAPGGKT      + +
Sbjct: 60  KISGKSIEHTTG----LVYSQEPAAQIVAQIAEPQEGMKVLDLAAAPGGKTTHLLSYLNN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +    +     C    FD ++ D PCS  G
Sbjct: 116 TGLLVSNEISNKRSKILVENVERFGARNVIVTNESSQRLAKCFNSFFDLIVFDGPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     D   + A  QR +L + I  +  GGI+V+S C+   +++EEVV  +
Sbjct: 176 MFRKDPQAIQYWHKDYPTECAQLQRDILKEAIKMLARGGILVYSTCTWSPEENEEVVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L+     +ELV +     K   M   ++     R+ P   +            F   LR
Sbjct: 236 LQEY-DYLELVDI----PKLNGMVEGINVPQVARMYPHHFQGEGQ--------FVAKLR 281


>gi|22537153|ref|NP_688004.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae 2603V/R]
 gi|25011082|ref|NP_735477.1| hypothetical protein gbs1028 [Streptococcus agalactiae NEM316]
 gi|76787905|ref|YP_329709.1| NOL1/NOP2/sun family RNA methylase [Streptococcus agalactiae A909]
 gi|76797787|ref|ZP_00780053.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae 18RS21]
 gi|22534016|gb|AAM99876.1|AE014237_10 NOL1/NOP2/sun family protein [Streptococcus agalactiae 2603V/R]
 gi|23095481|emb|CAD46687.1| Unknown, conserved protein [Streptococcus agalactiae NEM316]
 gi|76562962|gb|ABA45546.1| NOL1/NOP2/sun family putative RNA methylase [Streptococcus
           agalactiae A909]
 gi|76586863|gb|EAO63355.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae 18RS21]
          Length = 436

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 23/299 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E+      K+   A  D+               E      NA+     G   
Sbjct: 1   MKLPNEFIEK-YQTILKDEAEAFFDSFEQKPISAYRTNPLKEKQLDFPNAIPSTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +SI    G    + + Q+ +A I  Q+      + VLDL AAPGGKT      + +
Sbjct: 60  KISGKSIEHTTG----LVYSQEPAAQIVAQIAEPQEGMKVLDLAAAPGGKTTHLLSYLNN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +    +     C    FD ++ D PCS  G
Sbjct: 116 TGLLVSNEISNKRSKILVENVERFGARNVIVTNESSQRLAKCFNSFFDLIVFDGPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     D   + A  QR +L + I  +  GGI+V+S C+   +++EEVV  +
Sbjct: 176 MFRKDPQAIQYWHKDYPTECAQLQRDILKEAIKMLAHGGILVYSTCTWSPEENEEVVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L+     +ELV +     K   M   ++     R+ P   +            F   LR
Sbjct: 236 LQEY-DYLELVDI----PKLNGMVEGINVPQVARMYPHHFQGEGQ--------FVAKLR 281


>gi|18976541|ref|NP_577898.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM
           3638]
 gi|18892094|gb|AAL80293.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 386

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
           S+  L  F +G ++ Q   + +  ++        ++D+ AAPGGKT+ +     +  ++ 
Sbjct: 168 SLSELKSFEKGYFYPQSLPSMVTSRVLEPKEEEIIIDMAAAPGGKTSHIAQLLQNRGEII 227

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D SK RL+K+  NL RL +    +I+MDA +        D +L+DAPC++ G     P
Sbjct: 228 AIDKSKNRLKKMEENLKRLGVKNVKLIQMDARNLPELGIKADKILLDAPCTALGV---RP 284

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   R   DI  +A +QR  +   I  ++ GGI+V+S C+L  +++E  V+ +L+    
Sbjct: 285 KLWELRTPKDIEATARYQRAFIWAAIKSLRKGGILVYSTCTLSYEENEGNVKFMLKK--- 341

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 +          +  +  +   R  P              GFF   LR++
Sbjct: 342 -----GMKLEEQSLFIGSPGIGIDEVQRFYPH--------KHLTQGFFIAKLRKV 383


>gi|312869962|ref|ZP_07730101.1| NOL1/NOP2/sun family protein [Lactobacillus oris PB013-T2-3]
 gi|311094547|gb|EFQ52852.1| NOL1/NOP2/sun family protein [Lactobacillus oris PB013-T2-3]
          Length = 458

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 105/303 (34%), Gaps = 19/303 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F  +       +   A   +   P      V          L+        +  
Sbjct: 1   MKLPDAFINK-YQHLLGDEAPAFLTSFDQPATGGFRVNPAKAAPTATLDRATGKVEYVPT 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                          G  + Q+ SA    ++        VLDLCAAPGGKT      +  
Sbjct: 60  GYRGAVDGKSLDHVAGAIYSQEPSAMYVGEVVAPQPGERVLDLCAAPGGKTTHLVAKMKD 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              + A ++ ++R   L  NL+R       +      D   +    FD +LVDAPCS  G
Sbjct: 120 QGLLVANEIFRKRALVLAENLERWGTAQTVVTNESPADLEKQFPQFFDRILVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     D   + A  QRK+L   +  +KPGG +V+S C+   ++ E+    +
Sbjct: 180 MFRKEPAGMEYWTPDYPAECANRQRKILASALKMLKPGGTLVYSTCTFAPEEDEQNAAWL 239

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAV 436
           L + P  + +VP+                   +    R+ P  +           G F  
Sbjct: 240 LATYPG-LTMVPIKKYPGMDDGRPEWADGNPDLAKAVRLFPHHIAGE--------GHFIA 290

Query: 437 ALR 439
             +
Sbjct: 291 KFQ 293


>gi|297579072|ref|ZP_06941000.1| NOL1/NOP2/sun family protein [Vibrio cholerae RC385]
 gi|297536666|gb|EFH75499.1| NOL1/NOP2/sun family protein [Vibrio cholerae RC385]
          Length = 503

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 82  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340


>gi|153007105|ref|YP_001381430.1| Fmu (Sun) domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030678|gb|ABS28446.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 414

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 93/439 (21%), Positives = 153/439 (34%), Gaps = 63/439 (14%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L+ ++        ++D          LS+  +  +   +     +  R+ A L      
Sbjct: 27  ALAEILA-GAPAERIVDRVLRADR--GLSREARRALAEALFGVGLWRRRLYAQLGD---- 79

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
                                       A   L +    RD   R  A+ +  +      
Sbjct: 80  --------------------------GAAPARLLLAALLRDLAGRDDAETLAELPPGALP 113

Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTV-KFDIETWAH 191
                   +A  + +P+W    L    G+E         +     + + + +      A 
Sbjct: 114 PPRPPPGALADRASLPDWLAGELVAAAGEEAGALADALNLPGPLCLRVNLLRATPAVAAA 173

Query: 192 KLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           +L    +         G + +     ++  L    EG+  VQD  + +   L G     S
Sbjct: 174 RLAGEGVATRPGLLAPGCLVVASSRPNVYGLGAHREGLVEVQDEGSQLLGALVGARPGES 233

Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD CA  GGKT   A  +    +V A+D    RLE+LR    R       I+ +D    
Sbjct: 234 VLDACAGAGGKTLLLAAEVGPAGRVHAVDPDLARLERLRVRAARAGAA--GIVALDGAAP 291

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                 D  LVDAPCS  G +RR PD+ W  D          Q ++L +  + VKPGG +
Sbjct: 292 AGGLRVDRALVDAPCSELGALRRGPDLRWRLDPAAFAALPPLQLEILERAAACVKPGGRL 351

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ C+  + + EEV     R+ P    +VP           A  ++ +G++R  P    
Sbjct: 352 VYATCTFRRAEDEEVAIAFERAHPEWTRIVP--------SVGASTVTGDGFVRTWPH--- 400

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  G DGFF    +R
Sbjct: 401 -----RHGTDGFFGAVWKR 414


>gi|229508549|ref|ZP_04398052.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae BX
           330286]
 gi|229511380|ref|ZP_04400859.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           B33]
 gi|229518519|ref|ZP_04407962.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           RC9]
 gi|229607954|ref|YP_002878602.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae
           MJ-1236]
 gi|255745056|ref|ZP_05419006.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholera
           CIRS 101]
 gi|262161657|ref|ZP_06030675.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           INDRE 91/1]
 gi|262169535|ref|ZP_06037226.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           RC27]
 gi|229343208|gb|EEO08183.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           RC9]
 gi|229351345|gb|EEO16286.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           B33]
 gi|229354503|gb|EEO19426.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae BX
           330286]
 gi|229370609|gb|ACQ61032.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           MJ-1236]
 gi|255737527|gb|EET92922.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholera
           CIRS 101]
 gi|262021769|gb|EEY40479.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           RC27]
 gi|262028389|gb|EEY47044.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           INDRE 91/1]
          Length = 459

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 38  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 97

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 98  GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 157

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 158 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 217

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 218 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 274

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 275 LHIFPQMYDCE--------GFFVAKIRKLA 296


>gi|146325709|sp|Q9KRY1|RSMF_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|257096823|sp|C3LMI5|RSMF_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 473

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 52  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 112 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 171

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 231

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 232 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 288

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310


>gi|121535023|ref|ZP_01666841.1| putative RNA methylase, NOL1/NOP2/sun family [Thermosinus
           carboxydivorans Nor1]
 gi|121306436|gb|EAX47360.1| putative RNA methylase, NOL1/NOP2/sun family [Thermosinus
           carboxydivorans Nor1]
          Length = 458

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 117/311 (37%), Gaps = 23/311 (7%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML----- 198
               +P  F +R       +   A   +   P    L V     T A  ++         
Sbjct: 1   MHHDLPAAFCQR-MQALLADEFAAFYQSYEEPRTYGLRVNTLKITPAELVSLAPFALTPV 59

Query: 199 -PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                       +     P  A G++++Q+ SA     L        VLDL AAPGGK  
Sbjct: 60  PWATDGFYCLEEQRPGKHPYHAAGLYYIQEPSAMAAAPLLAPQPGEFVLDLAAAPGGKAT 119

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
                +     + A +V   R + L  N++RL +    +          +    FD +LV
Sbjct: 120 HLAAFMQGQGLLIANEVHPARAKILSENIERLGVKNCIVTNETPPRLAERFPAFFDRILV 179

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P        D   + A  QR++L   +  +K GG +++S C+   ++
Sbjct: 180 DAPCSGEGMFRKDPAACQEWTQDAPRQCAARQREILADAVRMLKSGGWLLYSTCTFAPEE 239

Query: 373 SEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSG 429
           +EE+V  +L + P   V  +P N  +  ++        +  G +R+ P  L         
Sbjct: 240 NEEIVDWLLAAYPDLAVVPLPHNHGFASAVPAWGGGRSDLAGAVRLWPHKLRGE------ 293

Query: 430 MDGFFAVALRR 440
             G F   LR+
Sbjct: 294 --GHFLALLRK 302


>gi|332158464|ref|YP_004423743.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2]
 gi|331033927|gb|AEC51739.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2]
          Length = 388

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
           S+  L  F +G ++ Q   + +  ++     +  ++D+ AAPGGKT  +     +  ++ 
Sbjct: 170 SLSELKSFEKGYFYPQGLPSMVTARILEPREDDVIIDMTAAPGGKTTHIAQLLQNRGEII 229

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D SK RL+K+  NL RL +    +I+MDA +        D +L+DAPC++ G     P
Sbjct: 230 AIDKSKNRLKKMEENLKRLGVKNVKLIQMDARNLPDLGIKADKILLDAPCTALGV---RP 286

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   R    I  +A +QR  +   I  +K GGI+V+S C+L  +++E  V+ +LR    
Sbjct: 287 KLWEERTPKHIEATARYQRAFIWAAIKSLKKGGILVYSTCTLSYEENEGNVKFMLRK--- 343

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++L   +            +  +   R  P              GFF   LR++
Sbjct: 344 GMKLEDQSIFIGSP-----GIGIDKVQRFYPH--------KHLTQGFFIAKLRKV 385


>gi|301066545|ref|YP_003788568.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
           Zhang]
 gi|300438952|gb|ADK18718.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
           Zhang]
          Length = 443

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 18/301 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +PE FKE+     G E    +  A           +   + W    +           
Sbjct: 1   MQLPEAFKEKYTRLLGDEAAAFL--ATFEAPAESGFRRDPAKPWPLDESLTEPIPWSPWG 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
                +   +   A G+ + Q+ SA     +        VLDLCAAPGGK+ QL      
Sbjct: 59  YYGKVAGNDIDHVA-GLVYSQEPSAQFVGTVAAPKPGERVLDLCAAPGGKSTQLACYLGD 117

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320
              + + +++  R + L  NL+R       +   D         ++FD +LVDAPCS  G
Sbjct: 118 TGLLVSNEINGPRSKVLSGNLERWGTRQILVTNNDPDTLAKAWPQMFDRILVDAPCSGEG 177

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  Q+++L   +  + PGG +++S C+   ++ E+++  +
Sbjct: 178 MFRKDPDATQYWHADYPAQCAERQKQILKAAVKMLAPGGTLIYSTCTFSPEEDEQIIAWL 237

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L ++   +  +                +PE    +R+ P  +           G F   L
Sbjct: 238 LANNAFTLTPIKQYPGMEAGRPAWADGNPELAKTVRLFPHRVRGE--------GHFVAKL 289

Query: 439 R 439
           +
Sbjct: 290 K 290


>gi|308159767|gb|EFO62287.1| Nucleolar protein NOP2 [Giardia lamblia P15]
          Length = 502

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 137/375 (36%), Gaps = 35/375 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ------RIAGI 145
           ++ + ++     VD                 ++     R   +   +         I+  
Sbjct: 133 ELRHAEI-YDPRVDEVTNIEGIRGRVLRVVGVLADFKSRRHPDLSRMFYLELLRKDISAA 191

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM----- 197
               +   + L   +G     A   AC  P  + + V          A  L A       
Sbjct: 192 YGYSDGVIDILLGLFGPIDFHAFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDP 251

Query: 198 ---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++      I + P +  G + +QDA++ +P           +LD+ AAPGG
Sbjct: 252 LGDWCKDGLQIFSSQVPIGATPEYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGG 311

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAV 310
           KT  L   +     + A D+++ R+  L+ NL R+ +    I   DA +       FD V
Sbjct: 312 KTTHLGALMQDSGMILANDMNRDRIPALQANLARMGVTCAVISCSDARELTQCTGNFDRV 371

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG---IVV-FSNC 366
           L+DAPC+  G + +   +   R  DD+ + +  Q++LL      +        +V +S C
Sbjct: 372 LLDAPCTGLGVVSKDASIKANRTFDDMHRLSHLQKELLNHAFDLLSKHPSSPRLVCYSTC 431

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKID 424
           S+   ++E V+  +L      VE+V L  ++ K       ++    +   P      +  
Sbjct: 432 SVTLSENEAVIDYIL--HKRNVEVVDLPFSFGKP-----GITRFNGMSYHPAIRKARRFY 484

Query: 425 GVSSGMDGFFAVALR 439
                  GFF   LR
Sbjct: 485 PHIHNTHGFFICLLR 499


>gi|223938944|ref|ZP_03630830.1| Fmu (Sun) domain protein [bacterium Ellin514]
 gi|223892371|gb|EEF58846.1| Fmu (Sun) domain protein [bacterium Ellin514]
          Length = 375

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 154/440 (35%), Gaps = 83/440 (18%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++ +++    +       L  E      + +S  D   +   V    R+   +D     
Sbjct: 8   IAAKVIAKA-NRERPADAQLRTELR--GQKGVSPEDGRYISETVFAYYRWYGWLDR---- 60

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                                             ++  + QA++              L 
Sbjct: 61  -------------------------------SQSMEEQLRQARK--------------LN 75

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
           R    +   +     +  +PEW K+ ++             +      + L  +      
Sbjct: 76  RAFLNEPASIPDSDFVKAVPEWTKDHVDVSTAW------LKSLQLEPKLWLRARPGKGRE 129

Query: 190 AHKLNAVMLPTGGIRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             +        G   L      E  + +   P F  G + +QD S+ +   +       +
Sbjct: 130 LAEKLGECWIAGDGPLSETLEYEGSQDLFRTPEFHAGEFELQDISSQMVGLICAPNPGET 189

Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             D CA  GGKT  L   + +   + A D ++ RL++L+    R  ++    +  D    
Sbjct: 190 WWDACAGEGGKTLHLGDLMQNKGLIWASDRAEWRLKRLKLRAGRAKIFNYRSVIWDGGAK 249

Query: 302 CP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
            P K  F+ +L+DAPCS  GT +R+P   WT    D+ + A  Q++L+   +  +KPGG 
Sbjct: 250 LPTKTKFNGILIDAPCSGVGTWQRNPHARWTTTLKDVQELAEVQKQLIAYAMPALKPGGK 309

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L ++++ EV  ++ +  P    +  +N     +    +  SP+          
Sbjct: 310 LVYSVCTLTREETSEVAAEISKRFPELKVMSLINPLKPGTTSEQIWFSPQEM-------- 361

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   G +G F  A ++
Sbjct: 362 --------GGNGMFVCAWQK 373


>gi|15641511|ref|NP_231143.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587235|ref|ZP_01677009.1| NOL1/NOP2/sun family protein [Vibrio cholerae 2740-80]
 gi|121726919|ref|ZP_01680120.1| NOL1/NOP2/sun family protein [Vibrio cholerae V52]
 gi|147674343|ref|YP_001217056.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O395]
 gi|153822818|ref|ZP_01975485.1| NOL1/NOP2/sun family protein [Vibrio cholerae B33]
 gi|227081661|ref|YP_002810212.1| Sun/nucleolar protein family protein [Vibrio cholerae M66-2]
 gi|254848624|ref|ZP_05237974.1| sun/nucleolar protein family protein [Vibrio cholerae MO10]
 gi|298498410|ref|ZP_07008217.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MAK
           757]
 gi|9656005|gb|AAF94657.1| Sun/nucleolar protein family protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548578|gb|EAX58632.1| NOL1/NOP2/sun family protein [Vibrio cholerae 2740-80]
 gi|121630681|gb|EAX63068.1| NOL1/NOP2/sun family protein [Vibrio cholerae V52]
 gi|126519677|gb|EAZ76900.1| NOL1/NOP2/sun family protein [Vibrio cholerae B33]
 gi|146316226|gb|ABQ20765.1| NOL1/NOP2/sun family protein [Vibrio cholerae O395]
 gi|227009549|gb|ACP05761.1| Sun/nucleolar protein family protein [Vibrio cholerae M66-2]
 gi|227013417|gb|ACP09627.1| Sun/nucleolar protein family protein [Vibrio cholerae O395]
 gi|254844329|gb|EET22743.1| sun/nucleolar protein family protein [Vibrio cholerae MO10]
 gi|297542743|gb|EFH78793.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MAK
           757]
          Length = 503

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 82  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340


>gi|86151702|ref|ZP_01069916.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153222|ref|ZP_01071426.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|315124151|ref|YP_004066155.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841331|gb|EAQ58579.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842948|gb|EAQ60159.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|315017873|gb|ADT65966.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 292

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 121/304 (39%), Gaps = 27/304 (8%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208
              R+E  Y K+ +  I  +      + +        IE    +     L    I     
Sbjct: 1   MLSRIEKLYTKDEMQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINAYCY 60

Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
                    + S+  F E  +++Q+ S+ +           SVLD+CAAPGGK+      
Sbjct: 61  LFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANF 120

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           + +   +   ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+
Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
              I    +    +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++
Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236

Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             L+    + +  + L +   K+             RI P +           DGFF   
Sbjct: 237 NALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287

Query: 438 LRRL 441
           LR+L
Sbjct: 288 LRKL 291


>gi|258625050|ref|ZP_05719971.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM603]
 gi|258582683|gb|EEW07511.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM603]
          Length = 473

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 129/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
               +     +L+ V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 52  FCQRVAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                 SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 112 DHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALT 171

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     D I   A  Q+ L+    
Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAF 231

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L +++++EV   + ++    V    L++ + ++   ++AL+ EG+
Sbjct: 232 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLDNLFEQA---SLALTEEGF 288

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310


>gi|153214766|ref|ZP_01949595.1| NOL1/NOP2/sun family protein [Vibrio cholerae 1587]
 gi|124115108|gb|EAY33928.1| NOL1/NOP2/sun family protein [Vibrio cholerae 1587]
          Length = 503

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 23/276 (8%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 82  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR---LIQPK 445
           + I P M +          GFF   +R+   +  P+
Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKQASVPTPE 346


>gi|258622869|ref|ZP_05717885.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM573]
 gi|258584808|gb|EEW09541.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM573]
          Length = 473

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L+ V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 52  FCQRAAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                 SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 112 DHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALT 171

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     D I   A  Q+ L+    
Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAF 231

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L +++++EV   + ++    V    L++ + ++   ++AL+ EG+
Sbjct: 232 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLDNLFEQA---SLALTEEGF 288

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310


>gi|224542044|ref|ZP_03682583.1| hypothetical protein CATMIT_01218 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524977|gb|EEF94082.1| hypothetical protein CATMIT_01218 [Catenibacterium mitsuokai DSM
           15897]
          Length = 437

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI----RLKEL 208
            +       K+       A +      L +  + +     L    +    I     L + 
Sbjct: 4   FDARMKSLLKDEYDDFKKALLEKPVKGLYLNRNKKNVERVLEEQYIEHHPIVENGYLYDE 63

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAK 265
                    F  G++++Q+ SA +         +  VLD+CAAPGGK+ ++         
Sbjct: 64  NYHPGRSAYFLAGLYYIQEPSAMLVADALPIEPDDFVLDMCAAPGGKSCEIASRLTGEGV 123

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323
           + A D+   R   L  N++R  L    +  +D   +  +    FD +++DAPCS  G  R
Sbjct: 124 LIANDIEASRARILSENIERFGLDNTIVTNVDPMRFTKQFQEAFDKIVLDAPCSGEGMFR 183

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           +    + T   D +++ A  Q+ LL      +K GG+V++S C+   +++E +V   +  
Sbjct: 184 KLEQAVDTWSEDKVLECAHIQKNLLKGAYDMLKQGGMVIYSTCTYSYEENEAMVHYAVDE 243

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +  EL+PL+    KS  +   +  +  +R  P              G F   LR+
Sbjct: 244 --LGFELLPLS----KSHGLCPGVDLDEVVRCYPHHYRGE--------GHFIALLRK 286


>gi|311251116|ref|XP_003124450.1| PREDICTED: putative methyltransferase NSUN5-like [Sus scrofa]
          Length = 466

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 157/409 (38%), Gaps = 29/409 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGRGFKGHGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  +    S +P + +        ++ V 
Sbjct: 93  PLLDRHQARLKAELARLKVRRGVSRNEDLLEVGSKSDPASQVPRFVRVNTLKTRSEDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   DI     K   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQGQA-SSLEDIRALKGKCFLLDPLLPELLVFPAQTDLHEHPLYQAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DKASCLPAVLLAPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P     +    +L+D  CS +G + R            + +
Sbjct: 272 ARAGVSCCELAEQDFLAVAPTDQRYRQVQYILLDPSCSGSGMLTRRLEEPGAGAPSQERL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VVQ  L+ SP    L P+  
Sbjct: 332 RALAGFQQRALSHALTFPALR---RLVYSTCSLCQEENEDVVQAALQQSPGAFRLAPVLP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           + W    +      E  +R +PD             GFF   L R+  P
Sbjct: 389 S-WPHRGLGTFPGAEHCLRASPDTTL--------TGGFFIAVLERVEVP 428


>gi|301776202|ref|XP_002923528.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase
           NSUN5-like [Ailuropoda melanoleuca]
          Length = 494

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 168/453 (37%), Gaps = 35/453 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M     ++ +L+ V  ++ S+  L+       A           + A+V  T R+   +D
Sbjct: 1   MALYATAASVLAGVESRQGSIKGLVYASSFQVAGSGSE------LYALVCETQRYSAVLD 54

Query: 65  AVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK-RDKENRHFAK 122
           AV+    L+ +  + +  L ++L   V ++L                 + R +     A+
Sbjct: 55  AVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWKPLLDRHRARLKAELAR 111

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           L        + + +E+  R    S +P + +         + V        S      + 
Sbjct: 112 LKVQRCVSRNEDLLEVGSRPGTASQVPRFVRVNTLKTNSDDAVDYFKRQGFSYQG-RASS 170

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
             D+     K   +      + +      +   P +  G   +QD ++ +P  L      
Sbjct: 171 LEDLRGLKGKCFLLDPLLPELLVFPAQTDLHDHPLYRAGHLILQDKASCLPATLLAPPPG 230

Query: 243 LSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             ++D CAAPG KT+ L     +  K+ A D+   RL  +   L R  +   ++ E D  
Sbjct: 231 SHIIDACAAPGNKTSHLAALLKNQGKIFAFDLDAGRLASMATLLARAGVSCCELAEQDFL 290

Query: 300 DYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI--VKSACFQRKLLLQGIS 353
              P     +    +L+D  CS +G   R  +               A FQ++ L   ++
Sbjct: 291 AVSPSDQRYRQVQYILLDPSCSGSGMPARQLEEPGAGTPSQARLQALAGFQQRALRHALT 350

Query: 354 F--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           F  ++    +V+S CSL ++++E+VVQ  L+ +P    L P+  + W    +      E 
Sbjct: 351 FPSLQ---RLVYSTCSLCQEENEDVVQDALQQNPGTFRLAPVLPS-WPHRGLGTFPGAEH 406

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            +R +P+             GFF   L R+  P
Sbjct: 407 CLRASPETTL--------TGGFFVAVLERVEVP 431


>gi|209695043|ref|YP_002262972.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aliivibrio
           salmonicida LFI1238]
 gi|226725332|sp|B6ELC0|RSMF_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|208008995|emb|CAQ79223.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 473

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 21/264 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLF--GTLN 241
           E    +L+ V     G  +         + S      G++++Q+AS+ +PV        N
Sbjct: 57  EEKQWQLDPVPWCDTGFWITRQESDTVKLGSTAEHMAGLFYIQEASSMMPVTALLKDNDN 116

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
               LD+ +APG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 117 IEMALDMASAPGSKTTQLAAGMKNKGALVANEYSSSRVKILCSNVQRCGVSNVALTHFDG 176

Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +     + FD++L+DAPCS  GTIR+ PD +     + +++    QR L+      +K
Sbjct: 177 RVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIKSAFHALK 236

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG++V+S C+L+ ++++ +   ++      V   PL   +    +   AL+ EG++ I 
Sbjct: 237 PGGVMVYSTCTLNHEENQNICHHLVTEFGDAVTFEPLGDLFE---NAEKALTKEGFLHIY 293

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P + +          GFF   +R+
Sbjct: 294 PQIFDSE--------GFFVAKIRK 309


>gi|262171479|ref|ZP_06039157.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
           MB-451]
 gi|261892555|gb|EEY38541.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
           MB-451]
          Length = 473

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L+ V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 52  FCQRAAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                 SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 112 DHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALT 171

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     D I   A  Q+ L+    
Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAF 231

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L +++++EV   + ++    V    L++ + ++   ++AL+ EG+
Sbjct: 232 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLDNLFEQA---SLALTEEGF 288

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310


>gi|269967589|ref|ZP_06181641.1| NOL1/NOP2/sun family protein [Vibrio alginolyticus 40B]
 gi|269827827|gb|EEZ82109.1| NOL1/NOP2/sun family protein [Vibrio alginolyticus 40B]
          Length = 518

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           ET   KL+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 97  ETKGWKLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 156

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 157 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANVERCGVRNAALSNFDGR 216

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       ++  A  Q+ L+      +KP
Sbjct: 217 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLDIADTQKDLIESAFHALKP 276

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L + +    +   AL+ EG++ I P
Sbjct: 277 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLENLFE---NAEAALTEEGFLHIFP 333

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 334 QVYDCE--------GFFVARIRKLA 350


>gi|332072564|gb|EGI83047.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae GA17570]
          Length = 262

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 120/276 (43%), Gaps = 22/276 (7%)

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
             +   I +T     E     L A         L +          FA G   +QD S+ 
Sbjct: 1   MRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFANGAITIQDESSQ 60

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           +         +  VLD CAAPGGKTA +   ++  +VTALD+   +L+ ++ N  RL + 
Sbjct: 61  LVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVE 120

Query: 290 A-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                 ++D     ++  +  FD +LVDAPCS  G +RR PD+ + ++T D       Q 
Sbjct: 121 DRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQL 180

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++L      +  GGI+ +S C++  +++ +VV+  L S P             K      
Sbjct: 181 EILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECK 232

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  +G I ITP++         G DGFF    R++
Sbjct: 233 DIMKDGCILITPELY--------GSDGFFISQFRKI 260


>gi|229529456|ref|ZP_04418846.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           12129(1)]
 gi|229333230|gb|EEN98716.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
           12129(1)]
          Length = 459

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
                +L  V     G  +   E    + +      G++++Q+AS+ +PV     G  + 
Sbjct: 43  AEKEWQLTPVPWCDNGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHY 102

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    +   D  
Sbjct: 103 DTVLDMAAAPGSKTTQIAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGC 162

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+      +K 
Sbjct: 163 VFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKV 222

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG++ I P
Sbjct: 223 GGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGFLHIFP 279

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            M +          GFF   +R+L 
Sbjct: 280 QMYDCE--------GFFVAKIRKLA 296


>gi|164687686|ref|ZP_02211714.1| hypothetical protein CLOBAR_01328 [Clostridium bartlettii DSM
           16795]
 gi|164603460|gb|EDQ96925.1| hypothetical protein CLOBAR_01328 [Clostridium bartlettii DSM
           16795]
          Length = 432

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 116/305 (38%), Gaps = 39/305 (12%)

Query: 148 IPEWFKERLENFYGKERVLAISDAC-ISPLYIDLTVK-FDIETWAH----KLNAVMLPTG 201
           +PE F E ++     E    I          + L       E +       L  +     
Sbjct: 4   LPEKFLEDVKVILQDEYEEFIDSYNENKTTGLRLNTMKMSKEKFQELNLFDLEQIPWTNE 63

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258
           G    E        P    GV+++Q+ SA   V          VLD+CAAPGGK+     
Sbjct: 64  GFYYDESVCKPGKNPLHEAGVYYLQEPSAMSVVPKLDIQKGDRVLDMCAAPGGKSTYILS 123

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPC 316
            +     + + +++  R+  L  NL+R       I   D+          FD +++DAPC
Sbjct: 124 QLDDTGLLVSNEINPIRINALGENLERFGARNCIITNTDSTRLRKAFTGYFDKIVIDAPC 183

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G  R+ P  +       +++    Q++++  G   +K GGI+V+S C+  ++++E+V
Sbjct: 184 SGEGMFRKDPVAIQDWTYSKVLECQSIQKEIIRDGYKMLKKGGILVYSTCTFSREENEDV 243

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           +++ +  +   V +                       R+ P  ++          G F  
Sbjct: 244 IEEFIAENEGAVLIEKE--------------------RLWPHKIKGE--------GHFVA 275

Query: 437 ALRRL 441
            +++L
Sbjct: 276 KIQKL 280


>gi|159118308|ref|XP_001709373.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803]
 gi|157437489|gb|EDO81699.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803]
          Length = 502

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 136/375 (36%), Gaps = 35/375 (9%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ------RIAGI 145
           ++ + ++     VD                 ++     R   +   +         I+  
Sbjct: 133 ELRHTEI-YDPRVDEVTNIEGIRGRILRVVGVLADFKSRRHPDLSRMFYLELLKKDISVA 191

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM----- 197
               +   + L   +G     A   AC  P  + + V          A  L A       
Sbjct: 192 YGYSDGVIDILLGLFGPIDFHAFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDP 251

Query: 198 ---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                  G+++      I + P +  G + +QDA++ +P           +LD+ AAPGG
Sbjct: 252 LGDWCKDGLQIFSSQVPIGATPEYLRGYYMIQDAASFLPPMALSPKPGERILDMSAAPGG 311

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAV 310
           KT  L   +     + A D+++ R+  L+ NL R+ +    I   DA +       FD V
Sbjct: 312 KTTHLGALMQDSGMILANDMNRDRIPALQANLARMGVTCAVISCSDARELAQCTGNFDRV 371

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG---IVV-FSNC 366
           L+DAPC+  G + +   +   R  +DI K +  Q++LL      +        +V +S C
Sbjct: 372 LLDAPCTGLGVVSKDASIKANRTFEDIHKLSHLQKELLKCAFDLLAKHPSSPRLVCYSTC 431

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKID 424
           S+   ++E V+  +LR+  + V  +P N            ++    +   P      +  
Sbjct: 432 SVTLSENEAVIDCILRTRNVEVVDLPFNFGKP-------GITRFNGVSYHPSIQKARRFY 484

Query: 425 GVSSGMDGFFAVALR 439
                  GFF   LR
Sbjct: 485 PHIHNTHGFFICLLR 499


>gi|312881594|ref|ZP_07741372.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370657|gb|EFP98131.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 474

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 18/298 (6%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
             +   +   +    +I    +     D       + W  +          + L E    
Sbjct: 24  KMDDFISACQRPLRKSIRVNTLKSSISDFMTLAKAKGWHIEQIPWCKDGFWVDLDEEQTP 83

Query: 212 IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKV 266
           + S      G++++Q+AS+ IPV      +    SVLD+ AAPG KT Q+   + +   +
Sbjct: 84  LGSTAEHLSGLFYIQEASSMIPVSALFSDSTKLQSVLDMAAAPGSKTTQIAALMGNKGVL 143

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRR 324
            A + S  R++ L  N++R  +    +   D   +     + FDAVL+DAPCS  GT+R+
Sbjct: 144 IANEYSASRVKALHANIERCGIRNTALSNFDGEVFGSWLPEAFDAVLIDAPCSGEGTVRK 203

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
               L       I   A  Q+KL+      +KPGG +V+S C+L  ++++ V + +    
Sbjct: 204 DDSALKNWSLKSIQSIADTQKKLIESAFHALKPGGTLVYSTCTLSLEENQFVCRHLKDKF 263

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              VE   L+  +      + +++ EG++ + P + +          GFF   L+++ 
Sbjct: 264 ADSVEFESLSHLFP---GASESVTDEGFLHVFPQVYDSE--------GFFVAKLKKVA 310


>gi|77405710|ref|ZP_00782797.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae H36B]
 gi|77175706|gb|EAO78488.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae H36B]
          Length = 436

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 23/299 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E+      K+   A  D+               E      NA+     G   
Sbjct: 1   MKLPNEFIEK-YQTILKDEAEAFFDSFEQKPISAYRTNPLKEKQLDFPNAIPSTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +SI    G    + + Q+ +A I  Q+      + VLDL AAPGGKT      + +
Sbjct: 60  KISGKSIEHTTG----LVYSQEPAAQIVAQIAEPQEGMKVLDLAAAPGGKTTHLLSYLNN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +    +     C    FD    D PCS  G
Sbjct: 116 TGLLVSNEISNKRSKILVENVERFGARNVIVTNESSQRLAKCFNXFFDLXXFDGPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     D   + A  QR +L + I  +  GGI+V+S C+   +++EEVV  +
Sbjct: 176 MFRKDPQAIQYWHKDYPTECAQLQRDILKEAIKMLAHGGILVYSTCTWSPEENEEVVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L+     +ELV +     K   M   ++     R+ P   +            F   LR
Sbjct: 236 LQEY-DYLELVDI----PKLNGMVEGINVPQVARMYPHHFQGEGQ--------FVAKLR 281


>gi|254518589|ref|ZP_05130645.1| tRNA/rRNA cytosine-C5-methylase [Clostridium sp. 7_2_43FAA]
 gi|226912338|gb|EEH97539.1| tRNA/rRNA cytosine-C5-methylase [Clostridium sp. 7_2_43FAA]
          Length = 319

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 21/242 (8%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
           ++  L  +  G  ++Q+ S+ +P        +L VLD+CAAPGGK+  +     + A + 
Sbjct: 84  NLRRLEAYKYGKIYLQNLSSMLPPLFLDLKEDLVVLDMCAAPGGKSLYMADLTKNKATIL 143

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRH 325
           A DV++ R E+L  N+++    +  ++  D      +  K FD VL+D PCS  G I   
Sbjct: 144 ANDVNEIRRERLNYNIEKQGANSIIVLGADGCSIGKRLNKYFDRVLLDVPCSGEGIITLK 203

Query: 326 PDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
              ++   +   +   +  Q++L     + +KPGGI+V+S C+L+  ++EEV++  L   
Sbjct: 204 SSKVYKGWNEKKVALCSKLQKRLFDSAYNALKPGGIMVYSTCTLNPFENEEVIEYALNKY 263

Query: 385 PI------PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           P        +EL  +     K  +   +      IRI P+           M+GFF   L
Sbjct: 264 PDLRLEKINLELPNVIRGLSKYKEKIYSEEITKSIRIIPN---------ENMEGFFIAKL 314

Query: 439 RR 440
            +
Sbjct: 315 VK 316


>gi|153801173|ref|ZP_01955759.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-3]
 gi|124123293|gb|EAY42036.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-3]
          Length = 503

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ IPV     
Sbjct: 82  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMIPVSALFM 141

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G      VLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 142 GDAEYDCVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340


>gi|327284099|ref|XP_003226776.1| PREDICTED: putative methyltransferase NSUN5-like [Anolis
           carolinensis]
          Length = 475

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 167/443 (37%), Gaps = 35/443 (7%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ +LS + ++  SL  L+         R    R   L+ A+V+ TLRF P ++A+L+
Sbjct: 20  AAAASVLSGLEQRSGSLKALV------YGSRFPGPR---LLLALVSETLRFGPVLEALLE 70

Query: 69  FV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
              L+ +  +    L ++L      +L+           A     R +     A+L    
Sbjct: 71  ASGLLRAEKKLPPHLAKVL---AYDLLFGKGLRGGGPWKAPLLKHRARLQAELARLKVRR 127

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
                 + +       G   +P + +         + V                    + 
Sbjct: 128 GVSRDEDLLPPPAGGGGNGTLPRYVRVNTIKTRFDDAVDYFKRQGFVYQGRASPEMKGVA 187

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
           + + K   +     G+ +      +     +  G   +QD ++ +P  L        VLD
Sbjct: 188 SLSGKTFLLDPHLPGVLIFPPGTDLHEDQLYKAGHVILQDKASCLPAFLLNPTPGSHVLD 247

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
            CAAPG KT+    ++ +  ++ A D+  +RL  +   L R  +   ++   D     P 
Sbjct: 248 ACAAPGNKTSHLAAIMGNKGRIFAFDLDAKRLATMSTMLARAGVTCHNLAHQDFLATDPG 307

Query: 305 KLF----DAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIVKSACFQRKLLLQGISF--VKP 357
                  + +L+D  CS +G + R   +     D   +   A FQR++L   + F  ++ 
Sbjct: 308 DPKYSHVEYILLDPSCSGSGIVGRLPYEEEERMDAQRLQALAGFQRRMLGHALKFPALR- 366

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
              +V+S CSL ++++EEVV+ VL        LV    + W    + +    +  +R +P
Sbjct: 367 --RLVYSTCSLHQEENEEVVRDVLEQHGRDFRLVEALPS-WTPRGLGVFAEAKCCLRASP 423

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                     +  +GFF   + R
Sbjct: 424 --------KETLTNGFFVAVMER 438


>gi|293396403|ref|ZP_06640681.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
           DSM 4582]
 gi|291421192|gb|EFE94443.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera
           DSM 4582]
          Length = 479

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 125/263 (47%), Gaps = 20/263 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWWVQDASASIPVQLFGT--LNN 242
           + +  +L  +     G  +    +++   S      G++++Q+AS+ +PV    +     
Sbjct: 59  KDYDWQLAPIPWCAEGFWITRDDDALRLGSAAEHLSGLFYIQEASSMLPVSALFSAGETP 118

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             VLD+ AAPG KT Q+   + +   + A + S  R++ L  NL R  +    +   D  
Sbjct: 119 RRVLDVAAAPGSKTTQIAALMNNRGGIVANEYSASRVKVLHANLSRCGVKNAALTHFDGR 178

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +       FDA+L+DAPCS  G +R+ PD +     + +   A  QR+L+      + P
Sbjct: 179 VFGAALPESFDAILLDAPCSGEGVVRKDPDAMSNWSPESVHSIAETQRQLIDSAFHALAP 238

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L+ Q++++V+  +L +    V + PL   +        AL+ EG++ + P
Sbjct: 239 GGVMVYSTCTLNAQENQQVINSLLANYGSAVSVEPLGDLFP---GAHQALTDEGFLHVFP 295

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            + +          GFF   LR+
Sbjct: 296 QIYDSE--------GFFVARLRK 310


>gi|262165707|ref|ZP_06033444.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
           VM223]
 gi|262025423|gb|EEY44091.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus
           VM223]
          Length = 492

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L+ V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 71  FCQRAAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 130

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                 SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 131 DHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALT 190

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     D I   A  Q+ L+    
Sbjct: 191 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAF 250

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L +++++EV   + ++    V    L++ + ++   ++AL+ EG+
Sbjct: 251 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLDNLFEQA---SLALTEEGF 307

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 308 LHIFPQMYDCE--------GFFVAKIRKLA 329


>gi|227529123|ref|ZP_03959172.1| tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227350967|gb|EEJ41258.1| tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 455

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 105/286 (36%), Gaps = 17/286 (5%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI-VSLPGFAEG 221
           +   A   A          V    +    K  +                +         G
Sbjct: 17  DEAPAFLAALNEQSLSGFRVNPLKDGLPQKTISQAKGKMPYVPTGYYGQVNGKSLDHVTG 76

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
             + Q+ SA    ++        VLDLCAAPGGK+  L   +     + A ++ ++R   
Sbjct: 77  WVYSQEPSAMYVGEVVDPQPGERVLDLCAAPGGKSTHLISLMKDQGLLVANEIFRKRALI 136

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           L  NL+R       +          +    FD +L+DAPCS  G  R+ P  +   +TD 
Sbjct: 137 LAENLERWGTRNTVVTNESPEKLEKQFPKFFDRILIDAPCSGEGMFRKEPAGIEYWNTDY 196

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNS 395
             + A  Q+K++   I  +KPGGI+V+S C+   ++ E+    +L++     +E V    
Sbjct: 197 PAECANRQQKIIASAIKMLKPGGILVYSTCTFAPEEDEQNASWILKNYSEMQMEEVKAYP 256

Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                       +PE    IR+ P  ++          G F    R
Sbjct: 257 GMDHGRPEWADGNPELAKAIRLFPHHIKGE--------GHFVAKFR 294


>gi|205373322|ref|ZP_03226126.1| sun protein [Bacillus coahuilensis m4-4]
          Length = 267

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 25/268 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M    N R  +  +L  V + +     LL+          +   D  L+  +   +++  
Sbjct: 1   MSK--NVREAALEVLEQVEKNQSYSNLLLNHTIEKY---EIKGPDVGLLTELTYGSIQRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   +   +      ++ LL +S+ Q+LYLD V + A +  AVE AK+ + ++ 
Sbjct: 56  MTLDYYLKPFIRKKVEN---WVRLLLHLSLYQMLYLDRVPERAAIHEAVEIAKK-RGHKG 111

Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            A LVN ILR + R       E     +RI+  +  P W   R    +G+E+  ++ +  
Sbjct: 112 IAGLVNGILRSIQREGVPSLDEISNEEERISIETSHPLWLVNRWSKQFGREKTRSMCETN 171

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVML--------PTGGIRLKELPESIVSLPGFAEGVWW 224
           +              T    LN +                +  L  ++     + EG   
Sbjct: 172 VQAPLQSARTNLTKATRDEVLNMLQDEGLDVRASEMIPEGIVSLKGNLAKSKAYKEGYIT 231

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAP 252
           VQD S+             +       P
Sbjct: 232 VQDESSMAVAYAIDLQKETNDTRCMCCP 259


>gi|262402183|ref|ZP_06078744.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC586]
 gi|262350965|gb|EEZ00098.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC586]
          Length = 473

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L+ V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 52  FCQRAAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G      VLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 112 GDAEYDCVLDMAAAPGSKTTQMAALMENQGVLVANEFSASRVKVLHANIERCGIRNTALT 171

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     D I   A  Q+ L+    
Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAINSIASTQKALIESAF 231

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L +++++EV   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 232 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLGNLFEHA---SIALTDEGF 288

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310


>gi|160331223|ref|XP_001712319.1| nop2 [Hemiselmis andersenii]
 gi|159765766|gb|ABW97994.1| nop2 [Hemiselmis andersenii]
          Length = 366

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 24/314 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA-----------HKLN 194
                   E+  N    E +     +  +P  + + +                    K+ 
Sbjct: 56  YNYSIDLVEKFFNIIPMEEIDEFFKSNETPRPLTIRINSIRNGEENFQNNLRNMGIQKIF 115

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
              L      +K     +   P F  G + +Q  S+   V          +L++ AAPGG
Sbjct: 116 EEKLLNFAGIIKRKNIRLGKNPEFLAGYFTLQGLSSFFSVIALDPQKGERILEIAAAPGG 175

Query: 255 K---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310
           K    +Q++ +     A D +K RL  L   + RL +    +   D   +  K   FD V
Sbjct: 176 KATFISQIMENTGICIANDKNKSRLNSLVSTIHRLGIENSIVTNFDGSFFHYKMKGFDRV 235

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNC 366
           L+DAPC+ TG I     +   +    I+ +   Q++LL+  I   K      G +V+S C
Sbjct: 236 LLDAPCTGTGIISHDERIKLHKINSAILINTTLQKRLLISAIDSCKINQEKKGYIVYSTC 295

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           S+  +++E ++Q  +    + +    L+      +     +  +           +    
Sbjct: 296 SILIEENESIIQYAVEKRNVKIVKTGLSFGIPGFVKYKNEIFNKKM-----HFCRRFYPH 350

Query: 427 SSGMDGFFAVALRR 440
              +DGFF   L +
Sbjct: 351 IHNVDGFFVCKLEK 364


>gi|7228247|emb|CAB77061.1| putative protein [Arabidopsis thaliana]
 gi|7269512|emb|CAB79515.1| putative protein [Arabidopsis thaliana]
          Length = 626

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 35/244 (14%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           + +    I + P +  G + +Q AS+ +PV          V+D+ AAPGGKT  +   + 
Sbjct: 306 VYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMK 365

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
           +   + A ++   RL+ L  NL R+ +    +   D  +                     
Sbjct: 366 NTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRE--------------------V 405

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVV 377
           I +   V  ++  DDI K A  Q++L+L  I  V    K GG +V+S CS+   ++E V+
Sbjct: 406 ISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVMIPENEAVI 465

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
              L++  + +    L+       +     S E   R  P +          MDGFF   
Sbjct: 466 DYALKNRDVKLVPCGLDFGRPGFREHRFHPSLEKTRRFYPHV--------HNMDGFFVAK 517

Query: 438 LRRL 441
           L+++
Sbjct: 518 LKKM 521


>gi|315058050|gb|ADT72379.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 292

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 27/304 (8%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208
              R+E  Y K+ +  I  +      + +        IE    +     L    I     
Sbjct: 1   MLSRIEKLYTKDEMQNILSSFTQEKNVCVFTNTLKISIEELEKEFLKQKLKFKKINAYCY 60

Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
                    + S+  F E  +++Q+ S+ +            VLD+CAAPGGK+      
Sbjct: 61  LFDAKDKAILSSMKVFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANF 120

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           + +   +   ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+
Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
              I    +    +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++
Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236

Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             L+    + +  + L +   K+             RI P +           DGFF   
Sbjct: 237 NALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287

Query: 438 LRRL 441
           LR+L
Sbjct: 288 LRKL 291


>gi|220915419|ref|YP_002490723.1| Fmu (Sun) domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953273|gb|ACL63657.1| Fmu (Sun) domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 437

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 145/442 (32%), Gaps = 50/442 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +   V  +       L+          L   ++  V   V   LR   ++D +L 
Sbjct: 18  ALVLEVHGLVHDQGWLADRALERVLRRER--ALWANERRAVAEAVYGILRAQGQLDFLLG 75

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                S P        L+R                  +A  QA         A    +  
Sbjct: 76  ----GSPPLATRYAAWLVR---------------AAGVAPAQAAARLGASPRALAGLAEA 116

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK----- 183
                   + L R A  + +P W  ERL +  G+    +++        + +        
Sbjct: 117 DARVAAIPDPLDRFAVEASLPRWIAERLVSELGEAEARSLAAVLNRRAPLTVRANALAGD 176

Query: 184 ---FDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                    A  + A         L  +  ++  +L  F  G + +QD  + +     G 
Sbjct: 177 RDALRAALAAEGVPAEPTRFSPWGLTLDGHQNAFALEAFRTGGFEIQDEGSQLIALACGA 236

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--- 293
                V+D CA  GGK    A  + +   + ALD    RLE  R    R H++       
Sbjct: 237 RPGQVVVDACAGAGGKSLALAAEMHNKGSLHALDSDAGRLEDARRRARRAHVHNLRTRVV 296

Query: 294 ---IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
               E +A         D VLVDAPCS  GT+RR PD  W     D  + A  QR+LL +
Sbjct: 297 PAGPEAEAAVADLAGKADVVLVDAPCSGLGTLRRKPDARWRLQPGDPERFAAIQRELLGR 356

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
                +PGG VV++ C++ + +++EV         + +   PL          A+     
Sbjct: 357 FSRLARPGGRVVYATCAMGRTENDEVADY--AERELGLAPAPLAPFLGAERARALGAGES 414

Query: 411 GWIRITPDMLEKIDGVSSGMDG 432
                       +     G DG
Sbjct: 415 RC---------ALYPHRHGTDG 427


>gi|73957768|ref|XP_536846.2| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5 isoform
           1 [Canis familiaris]
          Length = 469

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 170/453 (37%), Gaps = 38/453 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M     ++ +L+ V  +R S+  L+      +  +         + A+V  T R+   +D
Sbjct: 1   MALYATAASVLANVESRRGSIKGLVYASSFQNVKQ---------LYALVCETQRYSAVLD 51

Query: 65  AVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH-FAK 122
           AV+    L+ +  + +  L ++L   V ++L                 +     +   A+
Sbjct: 52  AVIASAGLLRAEKKLRPHLAKVL---VYELLLGRGFRGGGGRWKPLLDRHQARLKAELAR 108

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           L        + + +++  R    S +P + +         + +        S      + 
Sbjct: 109 LKVQRRVSRNEDLLQVGSRPGAASQVPRFVRVNTLKTSSDDAIDYFKRQGFSYQG-RASS 167

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
             D+     K   +      + +      +   P +  G   +QD ++ +P  L      
Sbjct: 168 LEDLRALKGKCFLLDPLLPELLVFPTQTDLHDHPLYQAGHLILQDKASCLPAMLLAPPPG 227

Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             V+D CAAPG KT+     + +  ++ A D+   RL  +   L R  +   ++ + D  
Sbjct: 228 SHVIDACAAPGNKTSHLAAFLKNQGRIFAFDLDAGRLASMATLLARAGVSCCELAQEDFL 287

Query: 300 DYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI--VKSACFQRKLLLQGIS 353
              P     +    +L+D  CS +G   R  +   T           A FQ++ L   ++
Sbjct: 288 AVSPSDQRYRQVQYILLDPSCSGSGMPTRQLEEPGTGTPSKARLQALAGFQQRALRHALT 347

Query: 354 F--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           F  ++    +V+S CSL ++++E+VVQ  L+ +P    L P+  + W    ++     E 
Sbjct: 348 FPSLQ---RLVYSTCSLCQEENEDVVQDALQQNPGTFRLAPVLPS-WPHRGLSSFPGAEH 403

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            +R +P+             GFF   L R+  P
Sbjct: 404 CLRASPETTL--------TGGFFVAVLERVEVP 428


>gi|20094111|ref|NP_613958.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19887109|gb|AAM01888.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 307

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 120/304 (39%), Gaps = 16/304 (5%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN---------AVMLPT 200
           E F+ERLE  +G                  + V          +          A    +
Sbjct: 5   EEFRERLERIFGDRAEDVYRYLLEGRPPTYVRVNTLKADVEEVVENLETAGVELAETPLS 64

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
              R+   P  + S      G  ++QD ++ +P +L        V+DLCAAPG KT QL 
Sbjct: 65  YAFRVLSSPGPLGSSLEHVAGYLYLQDLASMVPPELLDPEPPGPVIDLCAAPGSKTTQLA 124

Query: 261 V---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
                   V A+D   RR+  L  N++RL      +   DA        F  +L+D PCS
Sbjct: 125 QLLGGEGVVLAVDADPRRVRALVHNVNRLGCVNVIVAHADAARLRISAPF--LLLDPPCS 182

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             GT+ R P  L T       + A  Q +LL   +  + PGG +V+S C+   +++E V+
Sbjct: 183 GEGTLHRDPHALRTWTPKKPGRFARTQLRLLRAALRMLPPGGRLVYSTCTFSVEENELVI 242

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAV 436
            + L  +     +VP    + +   +      EG  +R       +ID  S   DGFF  
Sbjct: 243 HEALG-NDDRYRIVPSVPRWLEPHTVPGLTEWEGRELREDLRHAFRIDPASLESDGFFVA 301

Query: 437 ALRR 440
            + R
Sbjct: 302 VIER 305


>gi|332157765|ref|YP_004423044.1| nucleolar protein [Pyrococcus sp. NA2]
 gi|331033228|gb|AEC51040.1| nucleolar protein [Pyrococcus sp. NA2]
          Length = 311

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 19/268 (7%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +E              G  +     +   L  ++ G+   Q+AS+ IP  +        V
Sbjct: 55  LEEKFELERIPWTKGEGFYINSYDVNFGELIEYSLGLIIPQEASSMIPPVVLDPKPGELV 114

Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD+ AAPG KT Q    + +   + A D  + R   L  NL R  +    +   D   Y 
Sbjct: 115 LDMAAAPGSKTTQIAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYYA 174

Query: 303 P-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             + +FD VL+DAPCSS G IR++     T     +   +  Q++L+L     +KPGG +
Sbjct: 175 KYENVFDKVLLDAPCSSVGMIRKNFKFAKTWSLGKVYYHSRLQKRLILAAYKALKPGGTL 234

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVE--LVPLNSAYWKSIDMAMALSPE--GWIRITP 417
           V+S C++D  ++EEVV  +L+ +   VE   +P+  +           S E    +R+ P
Sbjct: 235 VYSTCTVDPLENEEVVDFLLQRTDAKVEKIDLPIRKSEPILEWEGRRYSEEIKKTVRLHP 294

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                     +  + F+     ++++P+
Sbjct: 295 QD--------NDTEAFYIA---KIVKPR 311


>gi|15897196|ref|NP_341801.1| proliferating cell nuclear antigen [Sulfolobus solfataricus P2]
 gi|284174441|ref|ZP_06388410.1| proliferating cell nuclear antigen [Sulfolobus solfataricus 98/2]
 gi|13813389|gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog [Sulfolobus
           solfataricus P2]
 gi|261601863|gb|ACX91466.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus solfataricus 98/2]
          Length = 339

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 134/343 (39%), Gaps = 29/343 (8%)

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-- 176
             AK +++             +R+A      ++  ER  N +  E  L       S    
Sbjct: 4   RIAKYLSAHYNLFQISPSYKAKRLASKYRFLDYMIERYLNMFSTEEELEEYLNSCSFPLK 63

Query: 177 --YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWV 225
                 T+K D +     +         ++  +    +   P          +  G + +
Sbjct: 64  KSIRCNTLKTDCKKLEEIMLEKGFVLEKVKWLQHGYVVKRTPPKPSLGSTLEYLMGYYHI 123

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282
           Q  ++ +P  +     +  VLD+ AAPGGKT Q   ++ +   V A++  + R+  L  N
Sbjct: 124 QGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLSQIMQNKGLVIAVEKKRSRIRALLSN 183

Query: 283 LDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           ++RL      +I+ D        K  FD +L+DAPCS  G I++ P   +    DD+   
Sbjct: 184 VNRLGAENVVLIKTDALNLININKSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDLRDF 243

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP---VELVPLNSAY 397
           A  Q  L+      +K GG +V+S CS+  ++ E +V   +    +    VE  P ++ Y
Sbjct: 244 AHLQLSLIEIAYELLKKGGYIVYSTCSVAPEEDELIVNFAIEELGMKAMSVEGYPASNGY 303

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +      +   +  +R  P           G +GFF   L++
Sbjct: 304 IEYYTTRFSNDVKNCLRFFPH--------KQGTEGFFLCLLKK 338


>gi|306829767|ref|ZP_07462956.1| NOL1/NOP2/sun family protein [Streptococcus mitis ATCC 6249]
 gi|304428118|gb|EFM31209.1| NOL1/NOP2/sun family protein [Streptococcus mitis ATCC 6249]
          Length = 434

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 120/299 (40%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+      ++       +          V    E+     +A+     G   
Sbjct: 1   MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ Q    + +
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPNPGMKVLDLAAAPGGKSTQLAAYLAN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 QGILVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P+ +    TD   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPEAMDYWSTDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L +     EL+P+         + +  +     R+ P   +            F   L+
Sbjct: 236 LDTY--DFELLPVEHVNGMVAGINLPETA----RMYPHHFKGEGQ--------FVAHLQ 280


>gi|313683659|ref|YP_004061397.1| fmu (sun) domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156519|gb|ADR35197.1| Fmu (Sun) domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 315

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 125/321 (38%), Gaps = 33/321 (10%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGG 202
             +PE F ERLE     ER  AI     SP  +   V       +    +L A  +P   
Sbjct: 1   MSLPEAFTERLEKIVPHERYEAIVRTFDSPKNVTFRVNTLKSTTQELEAELKAAHIPYES 60

Query: 203 IRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           I   E    I             F  G  ++Q+ ++ I   L       +VLDL AAPGG
Sbjct: 61  IGWLEGVYRIAPEHKLALTQTDAFYGGRLYIQNLASMIAPLLLSPQPEETVLDLAAAPGG 120

Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309
           KT     ++ +   ++A++ S+ R  +L  NL    +        D      K    FD 
Sbjct: 121 KTLMLAGMMQNTGWLSAVEPSRERFFRLCDNLKSQGVTNAHTYMTDGRSVGKKCPEMFDR 180

Query: 310 VLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
           +L+DAPCSS    + H     +      + +++  QR+LLL     +KPGG +++  CS 
Sbjct: 181 ILLDAPCSSEARFKTHDPKSMSFWSIHKVKETSKLQRRLLLSAYDALKPGGKLLYCTCSF 240

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-------GWIRITPDMLE 421
             +++E  +Q +L      +  +PL   +            E         +RI P    
Sbjct: 241 SPEENESPLQHLLERHGEHLNTLPLTLPFDNIQKPLERWGKEVFDKRIQNGVRILP---- 296

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
                +  +DGFF   L +  
Sbjct: 297 -----TDTIDGFFLCMLEKKT 312


>gi|315231566|ref|YP_004072002.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
 gi|315184594|gb|ADT84779.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
          Length = 384

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
           S+  L  F +G ++ Q   + +  ++        ++D+ AAPGGKT  L   + +  ++ 
Sbjct: 167 SLSELKSFEKGYFYPQSLPSMVTARILEPNEGDLIIDMAAAPGGKTTHLAQLMQNRGEII 226

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D SK RL K+   L RL +    ++ MD+ +        D +L+DAPC++ G     P
Sbjct: 227 AIDKSKNRLRKMEETLKRLGVKNVKLVHMDSRNLPELGIKADKILLDAPCTALGV---RP 283

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +  +R   DI+ +A +QR  +   I  ++ GGI+V+S C+L  +++E  V+ +++    
Sbjct: 284 KLWESRTPKDIIATARYQRHFINAAIKSLRKGGILVYSTCTLSYEENEGNVKYMIKK--- 340

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L          +  +  +   R  P              GFF   LR++
Sbjct: 341 -----GLRLEKQSFFIGSPGIGLKEVQRFYPH--------KHLTQGFFIAKLRKV 382


>gi|320546805|ref|ZP_08041113.1| NOL1/NOP2/sun family protein [Streptococcus equinus ATCC 9812]
 gi|320448551|gb|EFW89286.1| NOL1/NOP2/sun family protein [Streptococcus equinus ATCC 9812]
          Length = 436

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 18/232 (7%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
                   G+ + Q+ +A +  Q+     N+ VLDL AAPGGK+      + +   + + 
Sbjct: 63  GKSAEHVSGLVYSQEPAAQMVAQVASPKENMRVLDLAAAPGGKSTHLLSYMNNTGVLVSN 122

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           ++S +R + L  N++R       +     D      K+ FD ++ D PCS  G  R+ P 
Sbjct: 123 EISSKRSKILVENIERFGARNVVVTNESSDKLAKVFKEYFDLIVFDGPCSGEGMFRKDPQ 182

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                      + A  Q+++L + +  + PGG +V+S C+   +++E VV+ +L +    
Sbjct: 183 ATQYWHEGYPAECASLQKEILEEAMKMLAPGGTLVYSTCTWSPEENEGVVKWLLSTY-DN 241

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +ELVP+      +  + M        R+ P   +            F   LR
Sbjct: 242 LELVPIEKINGMAEGIEMPEVA----RMYPHCFKGEGQ--------FVAKLR 281


>gi|241896425|ref|ZP_04783721.1| tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC
           33313]
 gi|241870405|gb|EER74156.1| tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC
           33313]
          Length = 466

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 119/305 (39%), Gaps = 21/305 (6%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           ++ +P  ++ +       +     +      +      + +      +L           
Sbjct: 1   MAELPTDYQTKYRQLMDDDADEFFAAFDQPVVK---AFRINPLKANQQLYDTPTNGQVPW 57

Query: 205 LKELPESIVSLPGFAE--GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
            K     +          G+ + Q+ SA +  +L        VLDL AAPGGK+      
Sbjct: 58  GKWGYFGVAKGHSVDHTTGLIYSQEPSAQLVGELAQPQPGERVLDLAAAPGGKSTHLASF 117

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCS 317
           +     + + ++ ++R + L  N++R  +    +      +   K    FD +++DAPCS
Sbjct: 118 MNQQGLLVSNEIFRKRAQILSENIERFGVQNALVTNHSPQELSKKFPQYFDRIVLDAPCS 177

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ PD +     D   ++A  QR++L++ +  +KPGG +V+S C+   ++ E+++
Sbjct: 178 GEGMFRKDPDAMQYWHKDYPAENATRQREILVETMKMLKPGGTLVYSTCTFAPEEDEQII 237

Query: 378 QKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFF 434
             +L   P   +  VP +             +PE    +R+ P  +           G F
Sbjct: 238 AWLLAEYPDLHLVDVPKHDGMSDGRPAWADGNPELAKTVRLFPQSVAGE--------GHF 289

Query: 435 AVALR 439
              L+
Sbjct: 290 MAKLQ 294


>gi|6502552|gb|AAF14354.1|AF113138_1 nucleolar protein Nop2 [Eremothecium gossypii]
          Length = 240

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 16/213 (7%)

Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
               N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL      + 
Sbjct: 1   DPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVC 60

Query: 295 EMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
             DA ++      FD +L+DAPCS TG I +   V   R   D ++    Q++L+L  I 
Sbjct: 61  NYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQLILSAID 120

Query: 354 FV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
            V    K GG++V+S CS+  +++E VV   LR  P  V+LV    A  K        + 
Sbjct: 121 SVDSNSKHGGVIVYSTCSVAVEENEAVVDYALRKRPN-VKLVETGLAIGK-----EGSTS 174

Query: 410 EGWIRITPDML--EKIDGVSSGMDGFFAVALRR 440
               +  P      +    +  +DGFF    ++
Sbjct: 175 YRGKKFHPHYHLTRRYYPHTYNVDGFFVAKFQK 207


>gi|124028405|ref|YP_001013725.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
 gi|123979099|gb|ABM81380.1| predicted tRNA and rRNA cytosine-C5-methylase [Hyperthermus
           butylicus DSM 5456]
          Length = 340

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 130/339 (38%), Gaps = 25/339 (7%)

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
           R   +  + +  +       L+++   + +  +     LE F     V  +       + 
Sbjct: 8   RELKEAFHRLEEKYGDLAQSLVEKYHSVRLHRDQVVRYLELFDTVSEVERLLSTGEDKVM 67

Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQD 227
             + V     D E  + +L A           +        P  I +   +  G++ VQ 
Sbjct: 68  KTIRVNTLLADPEEVSERLEAKGFRLRRHPYIDYGLVVLEEPIPIGATHEYMLGLYTVQG 127

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR 285
            ++ + V          + D+CA  G KT Q       A + ALD+++R+L  L+ N  R
Sbjct: 128 PASMMVVPALDPPGKGRIADMCAGAGVKTTQIAQHSPQAHIVALDINRRKLLALKNNASR 187

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
           L ++    + MDA        FDA+L+DAPCS  G +       W R  +DI      Q 
Sbjct: 188 LAVFNIVALNMDARRLPQLGRFDAILLDAPCSGEGLLAFQRG-RWPRSFNDIASRVELQL 246

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKS---I 401
           +LL  GI  +   G++V++ CS+  +++E VV ++L       +E  P+ +         
Sbjct: 247 QLLKAGIEALADNGVLVYATCSISVEENEYVVTRILEEYSSLDLEEPPIKAGLPGKQSYA 306

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + +        R  P +         G +GF    L +
Sbjct: 307 GLKLDRRVSRCRRFYPHI--------HGTEGFTICRLVK 337


>gi|254168748|ref|ZP_04875590.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
 gi|289596783|ref|YP_003483479.1| RNA methylase, NOL1/NOP2/sun family [Aciduliprofundum boonei T469]
 gi|197622374|gb|EDY34947.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
 gi|289534570|gb|ADD08917.1| RNA methylase, NOL1/NOP2/sun family [Aciduliprofundum boonei T469]
          Length = 301

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 13/254 (5%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           KL           +    +   +    + G +++QD S+  PV          +LD+ AA
Sbjct: 56  KLEKYKNLNAYRIIDMPVKHPGATIEHSLGYYYIQDLSSMAPVLALNPQRGEKILDMAAA 115

Query: 252 PGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           PG KT     ++    + A D++  RL+ L  NL+RL +    I + DA        F+ 
Sbjct: 116 PGSKTTMLAELMREGTIVANDINFNRLKSLGGNLERLGITNVLITKKDAKKGNFGIKFNK 175

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  GT+R++P         +    A  Q+ +L      V  GGI+V+S C+ +
Sbjct: 176 ILLDAPCSGEGTVRKNPWGFRVVGDREHKMLARNQKIMLKNASRHVNNGGIIVYSTCTFN 235

Query: 370 KQDSEEVVQK---VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
             ++E VV+     L   P+  ++   +    +          E + RI P +       
Sbjct: 236 PWENEGVVKYGIETLSLEPVYFDIPIPHFKGVEEWGGEKYEYGEYYKRIYPHL------- 288

Query: 427 SSGMDGFFAVALRR 440
                G F   L++
Sbjct: 289 -EDTGGMFIAVLKK 301


>gi|229520538|ref|ZP_04409962.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TM
           11079-80]
 gi|229342362|gb|EEO07356.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TM
           11079-80]
          Length = 492

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237
                     +L  V     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 71  FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 130

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
           G  +  SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    + 
Sbjct: 131 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 190

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D   +     + FDAVL+DAPCS  GTIR+ PD +     + I   A  Q+ L+    
Sbjct: 191 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKSLIESAF 250

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +K GG +V+S C+L  +++++V   + ++    V    L + +  +   ++AL+ EG+
Sbjct: 251 QALKVGGTLVYSTCTLSCEENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 307

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + I P M +          GFF   +R+L 
Sbjct: 308 LHIFPQMYDCE--------GFFVAKIRKLA 329


>gi|229581588|ref|YP_002839987.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012304|gb|ACP48065.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
           Y.N.15.51]
          Length = 339

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 16/281 (5%)

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           I    +      L      + +  +    +     I+      S+ S   +  G + +Q 
Sbjct: 66  IRCNTLRTDCKKLEEMMSEKGFILEKVKWLQHGYIIKRTPPMPSLGSTLEYLMGYYHIQG 125

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +P  +     +  VLD+ AAPGGKT Q   ++ +   V A++  + R+  L  N++
Sbjct: 126 LASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVN 185

Query: 285 RLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL      +++ D        K  FD +L+DAPCS  G I++ P   +    DD+   A 
Sbjct: 186 RLGAENVVLVKTDVLNLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAY 245

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP---VELVPLNSAYWK 399
            Q  L+      +K GG +V+S CS+  +++E +V   +    +    VE  P ++ Y +
Sbjct: 246 SQLSLIEIAYELLKEGGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVE 305

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    +  +  +R  P         + G +GFF   L++
Sbjct: 306 YYNTKFNIDVKNCLRFFPH--------TQGTEGFFLCLLKK 338


>gi|257051428|ref|YP_003129261.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM
           12940]
 gi|256690191|gb|ACV10528.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM
           12940]
          Length = 302

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 113/298 (37%), Gaps = 14/298 (4%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML---PTGGIRLKEL 208
             E L   +   R               L    +    A +   +           L+  
Sbjct: 6   RYESLFEDWSGFRAACRRPLPSVVRVNTLKTTVERAKTALETEGITYETVDWHDGLLRLP 65

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265
            ++  S   + +G    Q+  +++P  +        V D  AAPG KT QL   +     
Sbjct: 66  DDNPGSNWPYVQGWLHGQEEVSALPPVVLDPDPGDRVWDATAAPGSKTTQLAALMDDEGA 125

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFDAVLVDAPCSSTGT 321
           + A D +  RL  LR N +RL +    +   DA ++       + +D  LVDAPCS  GT
Sbjct: 126 IVATDNNLGRLSALRSNAERLGVTNLAVTNEDARNHSLKPFDGRQYDHALVDAPCSCEGT 185

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           IR++PD L     D +   A  Q+ +L + +   KPGG VV+S C+   +++E V+   L
Sbjct: 186 IRKNPDALAQWSLDHVSGIAGAQKGILRRAVEVTKPGGTVVYSTCTFAPEENEAVLDHAL 245

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             +   +    L       +      + +  +R       ++    +   GFF   L 
Sbjct: 246 EETDARLVSSDLPLDSRPGVTEWDGETFDPSVR----KAHRVYPHLNDTGGFFVAKLE 299


>gi|197336252|ref|YP_002156071.1| ribosomal RNA small subunit methyltransferase F [Vibrio fischeri
           MJ11]
 gi|226725346|sp|B5FE06|RSMF_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|197317742|gb|ACH67189.1| ribosomal RNA small subunit methyltransferase F [Vibrio fischeri
           MJ11]
          Length = 473

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 21/264 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLF--GTLN 241
                 L  V     G  +         + S      G++++Q+AS+ +PV        +
Sbjct: 57  AEKQWDLEPVPWCDTGFWITRPESDTVKLGSTAEHMAGLFYIQEASSMMPVTALLKDNDD 116

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
               LD+ +APG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 117 IEMALDMASAPGSKTTQLAAGMKNQGALVANEFSSSRVKVLCSNIQRCGVSNVALTHFDG 176

Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +     + FD++L+DAPCS  GTIR+ PD +     + +++    QR L+      +K
Sbjct: 177 RVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALK 236

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG++V+S C+L+ ++++ +   ++      V   PL   +    +   AL+ EG++ I 
Sbjct: 237 PGGVMVYSTCTLNHEENQNICHHLVEQFGDAVTFKPLGDLFE---NAEKALTKEGFLHIY 293

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P + +          GFF   +R+
Sbjct: 294 PQIFDSE--------GFFVAKIRK 309


>gi|146320965|ref|YP_001200676.1| rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|145691771|gb|ABP92276.1| rRNA methyltransferase, putative [Streptococcus suis 98HAH33]
          Length = 324

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 26/244 (10%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
              P    G+ + Q+ +A +  Q+      + VLDL AAPGGK+      + +   + + 
Sbjct: 6   GKSPEHVTGLVYSQEPAAQVVGQIAAPKKGMKVLDLAAAPGGKSTHLLSYLENTGLLVSN 65

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           ++S +R   L  N++R       +     D  +      FD +++DAPCS  G  R++PD
Sbjct: 66  EISNKRARILAENIERFGARNVVVTNESADRLEKVFPGYFDMIVLDAPCSGEGMFRKYPD 125

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            +         + A  QR++L   ++ + P G +++S C+   +++EEVV  +L    + 
Sbjct: 126 AIQYWSKHYPAQCASLQREILESALNMLAPDGQLIYSTCTWSPEENEEVVTWLLEQYDLE 185

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR-------R 440
           +  +P  +   + I            R+ P                F    R       +
Sbjct: 186 LIDIPKINGMVEGIGYTEVA------RMYPHHFAGEGQ--------FVAKFRFLGEASQK 231

Query: 441 LIQP 444
            ++P
Sbjct: 232 KLKP 235


>gi|254230456|ref|ZP_04923834.1| NOL1/NOP2/sun family putative RNA methylase protein [Vibrio sp.
           Ex25]
 gi|151937027|gb|EDN55907.1| NOL1/NOP2/sun family putative RNA methylase protein [Vibrio sp.
           Ex25]
          Length = 518

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 140/332 (42%), Gaps = 27/332 (8%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           I  +  +    L   +       E  +  L      E  +A     +       T+K  +
Sbjct: 30  ICHKFCKRDPTLHPNVYIPDAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISV 89

Query: 187 ETWAHKLNAVMLPTGGIRLKE---------LPESIVSLPGFAEGVWWVQDASASIPVQ-- 235
           E +  + +A       +   +             + +      G++++Q+AS+ +PV   
Sbjct: 90  EAFLERADAKGWKLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSAL 149

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
                +  +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    
Sbjct: 150 FMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANVERCGVRNAA 209

Query: 293 IIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           +   D   +     + FDAVL+DAPCS  GT+R+  D +       ++  A  Q+ L+  
Sbjct: 210 LSNFDGRVFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLDIADTQKDLIES 269

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
               +KPGG++V+S C+L  +++++V   +  +    VE   L + +    +   AL+ E
Sbjct: 270 AFHALKPGGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLETLFE---NANAALTEE 326

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           G++ I P + +          GFF   +R+L 
Sbjct: 327 GFLHIFPQVYDCE--------GFFVARIRKLA 350


>gi|313115676|ref|ZP_07801131.1| NOL1/NOP2/sun family protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622003|gb|EFQ05503.1| NOL1/NOP2/sun family protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 515

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 7/240 (2%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVT 267
                P    GV++ Q+ SAS    L G    + VLD+CAAPGGK++QL         + 
Sbjct: 74  RPGRHPYHHAGVFYSQEPSASSAAPLLGVQPGMRVLDMCAAPGGKSSQLAAALQGRGVLV 133

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325
           + +    R + L+ NL+R+ +    ++              FD VLVDAPCS  G  R+ 
Sbjct: 134 SNEYVAARADILKSNLERMGVPNAVVLNEAPARIADALPEFFDRVLVDAPCSGEGMFRKE 193

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           P          + + A    ++L    + + PGG +V+S C+   ++ E  V   L+  P
Sbjct: 194 PVARQQHCEALVKQCAELGAEILDCAAAVLAPGGQLVYSTCTFAPEEDEGQVAAFLQRHP 253

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
               L         +       +  G + +    + +I     G +G F   L +   P+
Sbjct: 254 -EFTLADALGNVDYTFGSEGEANRTGGLPLDVSKVRRIWPCQGG-EGHFMARLVKAGTPR 311


>gi|254172710|ref|ZP_04879385.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
 gi|214033639|gb|EEB74466.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
          Length = 311

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 11/252 (4%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK- 255
            +P          +++  +P    G+ + Q+AS+ IP  +        VLD+ AAPG K 
Sbjct: 63  PIPWVREGFFINVDNLAKVPEHGLGLIFGQEASSMIPPVVLKPRPGELVLDMAAAPGSKT 122

Query: 256 --TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLV 312
              AQ + +   + A D ++ R   L  NL+R+ +    +   D   +   +  FD VL+
Sbjct: 123 GQIAQYMENEGCIIANDPNRDRANVLIANLNRMGVLIARVTTRDGAKFARFENTFDRVLL 182

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCSS G IR+    L       +VK    Q++L+L G   +KPGG +V+S C++D  +
Sbjct: 183 DAPCSSVGMIRKSWRFLREWREKAVVKYMNIQKRLILAGYKALKPGGTLVYSTCTIDPLE 242

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +EEVV  +LR +   +E + L     + +      +    +R       +I    +  + 
Sbjct: 243 NEEVVDYLLRKTDARLEKIDLPVKTSEPVLEWEGKTYSDELR----KALRIHPNDNDTEA 298

Query: 433 FFAVALRRLIQP 444
           FF     ++++P
Sbjct: 299 FFIA---KIVKP 307


>gi|242399529|ref|YP_002994954.1| Putative nucleolar protein I [Thermococcus sibiricus MM 739]
 gi|242265923|gb|ACS90605.1| Putative nucleolar protein I [Thermococcus sibiricus MM 739]
          Length = 304

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 16/232 (6%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSK 273
            ++ G+ + Q+AS+ IP  +        VLD+ AAPG KT Q    + +   + A D+ K
Sbjct: 80  EYSLGLVFPQEASSMIPPVVLDPQPGELVLDMAAAPGAKTTQIAQYMENKGCIIANDMKK 139

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            R+  L  NL+R  +    +   D   +   +  FD +L+DAPCSS G +R+    L++ 
Sbjct: 140 WRVNVLIANLNRFGVLNTRVTVKDGTYFGRFENTFDKILLDAPCSSVGMVRKSFKFLFSW 199

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
               ++  +  Q+KL++     +KP G++V+S C++D  ++E VV  +L  +   +E + 
Sbjct: 200 SMKKVITYSNIQKKLIMAAYKALKPRGVLVYSTCTIDPLENEGVVDYLLLKTDAKIEKID 259

Query: 393 LN----SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L         +   M  +      +RI P          +  + FF   +R+
Sbjct: 260 LPLHSTPPVLEFDGMKYSEEVRKCLRIHPQD--------NNTEAFFVAKIRK 303


>gi|239932443|ref|ZP_04689396.1| putative Sun-family protein [Streptomyces ghanaensis ATCC 14672]
          Length = 274

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 17/214 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 22  PVRVLAFEALRAVDERDAYANLVLPPLLRTAREKGDFDARDAALATELVYGTLRRQGTYD 81

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V  +VE A+    +   AK V
Sbjct: 82  AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 140

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LRR++++ ++                 +A +   P W    L +  G  R     + 
Sbjct: 141 NAVLRRIAQDDLDGWLERVAPPYEEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEDLL 200

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
            A      + L  +    T    L       G  
Sbjct: 201 RADNERPEVTLVARPGRATTDELLGEEAAVPGRW 234


>gi|227828150|ref|YP_002829930.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.14.25]
 gi|229585379|ref|YP_002843881.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.27]
 gi|238620340|ref|YP_002915166.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.4]
 gi|227459946|gb|ACP38632.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.14.25]
 gi|228020429|gb|ACP55836.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.27]
 gi|238381410|gb|ACR42498.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.4]
 gi|323475203|gb|ADX85809.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus REY15A]
 gi|323477935|gb|ADX83173.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus HVE10/4]
          Length = 339

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 16/281 (5%)

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           I    +      L      + +  +    +     I+      S+ S   +  G + +Q 
Sbjct: 66  IRCNTLRTDCKKLEEMMSEKGFILEKVKWLQHGYIIKRTPPKPSLGSTLEYLMGYYHIQG 125

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +P  +     +  VLD+ AAPGGKT Q   ++ +   V A++  + R+  L  N++
Sbjct: 126 LASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVN 185

Query: 285 RLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL      +++ D        K  FD +L+DAPCS  G I++ P   +    DD+   A 
Sbjct: 186 RLGAENVVLVKTDVLNLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAY 245

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP---VELVPLNSAYWK 399
            Q  L+      +K GG +V+S CS+  +++E +V   +    +    VE  P ++ Y +
Sbjct: 246 SQLSLIEIAYELLKEGGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVE 305

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    +  +  +R  P         + G +GFF   L++
Sbjct: 306 YYNTRFNIDVKNCLRFFPH--------TQGTEGFFLCLLKK 338


>gi|84517372|ref|ZP_01004725.1| possible NOL1/NOP2/sun family protein [Loktanella vestfoldensis
           SKA53]
 gi|84508736|gb|EAQ05200.1| possible NOL1/NOP2/sun family protein [Loktanella vestfoldensis
           SKA53]
          Length = 389

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 141/449 (31%), Gaps = 77/449 (17%)

Query: 1   MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  G  AR   +  +L  +          L      S F     +D+  VR  V   LR 
Sbjct: 1   MTPG--ARVAAAITVLDQI-GGGAFAEQALTGWARASRFAG--AKDRAAVRDHVFDVLRC 55

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              +      +L++ L ++                                +       H
Sbjct: 56  RRSLGESDGRLLMARLLQRDNVD---------------------------LSHIFNGLDH 88

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC------- 172
              +++          + L    A    +P+W     +   G + + A            
Sbjct: 89  APDVLSETEAAALALPLALSDAAAC--DLPDWLWPVWQASLGADALQAAQAQQARADVFL 146

Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
                          +        A     G +R+ + P  I +   +  G+  +QDA++
Sbjct: 147 RVNQRRITLAAAMAALAQDGVTAQAHDTVDGCLRVLDNPRRIRTAAAYLTGLVELQDAAS 206

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
              VQ+        VLD CA  GGK  A      A + A D++  R+  L     R    
Sbjct: 207 QRAVQMVPVAAGARVLDYCAGGGGKALAFADRHVADIFAHDIAPARMADLPDRAARAG-- 264

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              I  +          FD V  DAPCS +GT RR PD  W    D +      Q  ++ 
Sbjct: 265 -VVITRLAPDQVADHAPFDVVFCDAPCSGSGTWRRSPDAKWRLTRDRLDALCAIQNDVIG 323

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +  +FV P G++ ++ CS+ + +++ V+ + L  +P                        
Sbjct: 324 RAATFVAPQGLLAYATCSVLQDENDAVITRFLHCNPAWSV-------------------- 363

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
              +R      ++      G DGFF   L
Sbjct: 364 --MLR------DQRLPGPDG-DGFFLSVL 383


>gi|295100667|emb|CBK98212.1| tRNA and rRNA cytosine-C5-methylases [Faecalibacterium prausnitzii
           L2-6]
          Length = 514

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 103/258 (39%), Gaps = 7/258 (2%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L           +++        P    GV++ Q+ SAS    L G    + VLDLCAAP
Sbjct: 53  LRPSPFCKAAFVVEQPDFRPGRHPYHHAGVFYSQEPSASSAAPLLGVRPGMRVLDLCAAP 112

Query: 253 GGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307
           GGK++QL         + + +    R E L+ NL+R+ +    ++              F
Sbjct: 113 GGKSSQLAAALQGQGLLVSNEYVAARAEILKSNLERMGVSNAVVLNETPARIAAALPEFF 172

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VLVDAPCS  G  R+ P  L       + + A     +L    + + PGG +V+S C+
Sbjct: 173 DRVLVDAPCSGEGMFRKEPAALAQHCEALVKQCAELGADILDSAAAALAPGGELVYSTCT 232

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
              ++ E  V   L+  P    L  +      +       +  G + +    + +I    
Sbjct: 233 FAPEEDEGQVAAFLQRHP-EFTLADVLGHVDYTFGSEGEANRTGGLPLDVSRVRRIWPCQ 291

Query: 428 SGMDGFFAVALRRLIQPK 445
            G +G F   L +   P+
Sbjct: 292 GG-EGHFMARLVKAGTPR 308


>gi|221061617|ref|XP_002262378.1| Sun-family protein [Plasmodium knowlesi strain H]
 gi|193811528|emb|CAQ42256.1| Sun-family protein, putative [Plasmodium knowlesi strain H]
          Length = 376

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 138/426 (32%), Gaps = 87/426 (20%)

Query: 29  LDLEYGDS-AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLR 87
           LD+          +  RD+  +   V   +R    +       L S  P           
Sbjct: 22  LDIYMRLYFKGNNIKNRDKPFISEHVYNIMRNKTLL-----SYLSSPCP----------- 65

Query: 88  VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI 147
                 LY +V             K    +  +   +N+                     
Sbjct: 66  ------LYTNV------------IKTYFSSDKWKYEMNNE-----------KIPAHVRYS 96

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIR 204
            P+   E+L N YG+++   +         + L V  +          L +  +      
Sbjct: 97  FPKELYEQLVNCYGEKKSHTLMSILNEKAPVFLRVNTNKISRNDLYKLLMSKGVSVEKCV 156

Query: 205 ------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--- 255
                 L      + +   + +G + +QD ++ I            VLD CA  GGK   
Sbjct: 157 NSPQGLLLTKSCILKNNYEYNKGYFEIQDEASQIVSLKIPVQPGYKVLDFCAGSGGKTLA 216

Query: 256 TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314
            + ++ +  KV   D+  + L + +  L R  ++   ++  +           D V+VDA
Sbjct: 217 FSPIMDNTGKVYLHDIRDKMLSQAKVRLRRAGIHNYILLNSNHILLKKLVGYMDTVIVDA 276

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PC+ TG +RR+P++ +     ++ +    QR++  Q + +VK  G +V+  CS+   ++ 
Sbjct: 277 PCTGTGALRRNPEMKYKYSNSNLYEYVNLQRQIFQQALLYVKKNGKIVYITCSILDAENV 336

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
             V+       + +   P +S                               S  MDGFF
Sbjct: 337 HQVKYFCEKHNLFLSEPPFHS----------------------------LPQSKSMDGFF 368

Query: 435 AVALRR 440
                R
Sbjct: 369 LAIFER 374


>gi|86156704|ref|YP_463489.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773215|gb|ABC80052.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 437

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 92/442 (20%), Positives = 149/442 (33%), Gaps = 50/442 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +   +   V  +       L+          L   ++  V   V   LR   ++D +L 
Sbjct: 18  ALVLEVHGLVHDQGWLADRALERVLRRER--ALWANERRAVAEAVYGILRSQGQLDFLLG 75

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                S P        L+R +              V  A   A+     R  A L  +  
Sbjct: 76  ----GSPPLATRYAAWLVRGA-------------GVGPAQAAARLGAAPRALAGL--AEA 116

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK----- 183
                   + L R A  + +P W  ERL +  G+    A++        + +        
Sbjct: 117 DARIAAIADPLDRFAVEASLPRWIAERLVSELGEAEARALAAVLNRRAPLTVRANALAGD 176

Query: 184 ---FDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                    A  + A         L  +  ++  +L  F  G + +QD  + +     G 
Sbjct: 177 REALRAALAAEGVPAEQTRFSPWGLTLDGHQNAFALEAFRTGGFEIQDEGSQLIALACGA 236

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--- 293
                V+D CA  GGK    A  + +   + ALD    RLE  R    R H++       
Sbjct: 237 RPGQVVVDACAGAGGKSLALAAEMHNKGSLHALDSDAGRLEDARRRARRAHVHNLRTRVL 296

Query: 294 ---IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
               E +A         D VLVDAPCS  GT+RR PD  W     D  + A  QR+LL +
Sbjct: 297 PAGPEAEAALTDLAGKADVVLVDAPCSGLGTLRRKPDARWRLQPGDPERFAAIQRELLGR 356

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
                +PGG +V++ C++ + ++++V         + +   PL          A+  S  
Sbjct: 357 FARLARPGGRIVYATCAMGRTENDDVADF--AERELGLAPAPLAPFLGAERARALGASES 414

Query: 411 GWIRITPDMLEKIDGVSSGMDG 432
                       +     G DG
Sbjct: 415 RC---------ALYPHRHGTDG 427


>gi|227830857|ref|YP_002832637.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
           L.S.2.15]
 gi|229579743|ref|YP_002838142.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
           Y.G.57.14]
 gi|284998364|ref|YP_003420132.1| putative RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
           L.D.8.5]
 gi|227457305|gb|ACP35992.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
           L.S.2.15]
 gi|228010458|gb|ACP46220.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
           Y.G.57.14]
 gi|284446260|gb|ADB87762.1| putative RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
           L.D.8.5]
          Length = 339

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 16/281 (5%)

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           I    +      L      + +  +    +     I+      S+ S   +  G + +Q 
Sbjct: 66  IRCNTLRTDCKKLEEMMSEKGFILEKVKWLQHGYIIKRTPPKPSLGSTLEYLMGYYHIQG 125

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +P  +     +  VLD+ AAPGGKT Q   ++ +   V A++  + R+  L  N++
Sbjct: 126 LASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVN 185

Query: 285 RLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           RL      +++ D        K  FD +L+DAPCS  G I++ P   +    DD+   A 
Sbjct: 186 RLGAENVVLVKTDVLNLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAY 245

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP---VELVPLNSAYWK 399
            Q  L+      +K GG +V+S CS+  +++E +V   +    +    VE  P ++ Y +
Sbjct: 246 SQLSLIEIAYELLKEGGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVE 305

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    +  +  +R  P         + G +GFF   L++
Sbjct: 306 YYNTKFNIDVKNCLRFFPH--------TQGTEGFFLCLLKK 338


>gi|300771727|ref|ZP_07081602.1| NOL1/NOP2/sun family protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761716|gb|EFK58537.1| NOL1/NOP2/sun family protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 453

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 125/321 (38%), Gaps = 28/321 (8%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             +I+P     +L      +    I           + +     T A   +A  +P    
Sbjct: 1   MSNILPNSLIRKLGANPLFDEQAFIDIHENGERQSSIRINEKKITTAPFAHAEPIPWCDR 60

Query: 204 RLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKT-- 256
               +     +L P +  G ++ QDAS+     +          L  LDLCAAPGGKT  
Sbjct: 61  GFYLVERPSFTLDPLYHAGCYYSQDASSMFISHIIQHLKLDGEPLKALDLCAAPGGKTTL 120

Query: 257 -AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVDA 314
               +   + + A ++ K R+  L  N+ R       I   D          FD VL+DA
Sbjct: 121 LNSYLHPQSLLVANEIIKTRVPILMENMVRWGNSNVVITNNDPSAFRRLPGYFDLVLIDA 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS +G  R+    +      ++   +  Q+++L + +  +K  GI+++S CS  ++++E
Sbjct: 181 PCSGSGMFRKDSGAIDEWSEANVKLCSERQQRILAEAMGCLKTDGILLYSTCSYSQEENE 240

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           ++   +++   +    +P+   +      +   +  G+ R  P  ++          GFF
Sbjct: 241 DIADWLVKEYGLKSIQIPVREEWGIEETKSDISTCFGY-RFYPHKVKGE--------GFF 291

Query: 435 AVAL----------RRLIQPK 445
             A           R+ I+P+
Sbjct: 292 ITAFVKTAFQETFNRKKIKPE 312


>gi|149911966|ref|ZP_01900563.1| putative nucleolar protein [Moritella sp. PE36]
 gi|149804974|gb|EDM65004.1| putative nucleolar protein [Moritella sp. PE36]
          Length = 286

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 120/265 (45%), Gaps = 25/265 (9%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQLFGTLN--- 241
           +T    L  V     G  L++      + +      G++++Q+AS+ +PV          
Sbjct: 33  KTKQWLLTPVPWCEEGFWLEQENTDTKLGNSWEHIAGLFYIQEASSMLPVTALFKEQVSG 92

Query: 242 ----NLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                 ++LD  +APG KT+Q+     +   + A ++S  RL+ L  N+ R  +    + 
Sbjct: 93  PTAQYNTILDCASAPGSKTSQIAALCNNNNFIVANELSSSRLKVLSANIKRCGIKNVALS 152

Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             DA  +     ++FDAVL+DAPCS  G IR+    +       I   A  Q++L+    
Sbjct: 153 HYDANVFGTWLPEMFDAVLLDAPCSGEGAIRKDDKAMLNWSLKSINDIADIQKELIDSAF 212

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +KPGG +++S C+L+  +++ V Q +L   P   E++PLN  +         L+ EG+
Sbjct: 213 KALKPGGTLIYSTCTLNGIENQAVCQHLLDLYPDNAEVIPLNDLFP---TANNCLTAEGF 269

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVA 437
           + + P + +          GFF   
Sbjct: 270 LHVWPQIYDSE--------GFFVAK 286


>gi|322385469|ref|ZP_08059113.1| NOL1/NOP2/sun family protein [Streptococcus cristatus ATCC 51100]
 gi|321270207|gb|EFX53123.1| NOL1/NOP2/sun family protein [Streptococcus cristatus ATCC 51100]
          Length = 450

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 118/312 (37%), Gaps = 24/312 (7%)

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
                + +R       P  FKE+ E     +   A                   E     
Sbjct: 1   MNYKSIYEREKASMDFPAGFKEKYEK-ILGQEAEAFFATFDQDPISAFRSNPLKENQKDF 59

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
            +A+     G   K   +S+  + G    + + Q+ +A +  Q+      + VLDL AAP
Sbjct: 60  TDAIPNTDWGYYGKVSGKSVEHVTG----LVYSQEPAAQMVAQVAAPQKGMKVLDLAAAP 115

Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLF 307
           GGK+      + +   + + +++ +R + L  N++R       +     D      +  F
Sbjct: 116 GGKSTHLLSYLGNTGLLVSNEINAKRSKILVENIERFGARNVLVTNESADRLAKVFQGYF 175

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +++DAPCS  G  R+ PD       +   + A  QR++L   +  +  GG +V+S C+
Sbjct: 176 DLIVLDAPCSGEGMFRKQPDATQYWSPEYPAQCARLQREILEDAVKMLATGGQLVYSTCT 235

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
              +++EE+V  +L + P+ +  +P  +     ID           R+ P   +      
Sbjct: 236 WAPEENEEIVAWLLENFPLELLEIPKINGMVAGIDFPETA------RMYPHHFKGEGQ-- 287

Query: 428 SGMDGFFAVALR 439
                 F    R
Sbjct: 288 ------FVAKFR 293


>gi|240102348|ref|YP_002958656.1| tRNA/rRNA cytosine-C5-methylase, putative [Thermococcus
           gammatolerans EJ3]
 gi|239909901|gb|ACS32792.1| tRNA/rRNA cytosine-C5-methylase, putative [Thermococcus
           gammatolerans EJ3]
          Length = 389

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
           S+  L  F EG+++ Q   + +   +        ++D+ AAPGGKT+ +     +  ++ 
Sbjct: 174 SLSELQSFKEGLFYAQSLPSMVVAHVLEPSEEELIIDMAAAPGGKTSHIAQLLQNRGEII 233

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D S+ RL K+   L RL +    +I MDA          D +L+DAPC++ G     P
Sbjct: 234 AIDKSRNRLRKMEEELKRLGVKNVRLIRMDARKLPELGLQADKILLDAPCTALGI---RP 290

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +  +R   DI+ +A +QR  +   I  ++ GG++V+S C+L  +++E  V+ +L     
Sbjct: 291 KLWESRTPKDIIATARYQRAFIWAAIKSLRRGGVLVYSTCTLSYEENEANVKFMLEK--- 347

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L          +  +  E   R  P+             GFF   LR++
Sbjct: 348 -----GLKLEEQAVFIGSEGIGLENVQRFYPN--------RHLTQGFFIAKLRKV 389


>gi|254556617|ref|YP_003063034.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
 gi|254045544|gb|ACT62337.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
          Length = 455

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 18/232 (7%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSK 273
               G  + Q+ SA    +         VLDLCAAPGGKT      +     +   ++++
Sbjct: 71  EHLAGAVYSQEPSAMTVGEFAKPEPGERVLDLCAAPGGKTTHLLSYLHQTGLLVTNEINR 130

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT 331
           +R+  L  N++R       I          +    FD +LVDAPCS  G  R+  D +  
Sbjct: 131 QRVTALGDNVERYGARNTVITNDTPAALAKELPGFFDRILVDAPCSGEGMFRKDHDAVQY 190

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
              D     A  QR++L + +  ++PGG +++S C+   ++ E+++  +L++ P   EL 
Sbjct: 191 WTPDYPAACAERQREILTEAVKMLRPGGHLIYSTCTFAPEEDEQMMAWLLKTYP-EFELE 249

Query: 392 PLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALR 439
           PL                   +    R+ P ++           G F   L 
Sbjct: 250 PLAKTAGMVDAKPEWADGNPELAKAARLFPHLMRGE--------GHFIAKLV 293


>gi|91227972|ref|ZP_01262082.1| Sun/nucleolar protein family protein [Vibrio alginolyticus 12G01]
 gi|91188293|gb|EAS74591.1| Sun/nucleolar protein family protein [Vibrio alginolyticus 12G01]
          Length = 478

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           ET   KL+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 57  ETKGWKLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANVERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       ++  A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLDIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V Q +  +    VE   L + +    +   AL+ EG++ I P
Sbjct: 237 GGVMVYSTCTLSTEENQQVCQHLKETFGDAVEFERLENLFE---NAEAALTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+  
Sbjct: 294 QVYDSE--------GFFVARIRKQA 310


>gi|28378408|ref|NP_785300.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1]
 gi|300767350|ref|ZP_07077262.1| NOL1/NOP2/sun family protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180562|ref|YP_003924690.1| rRNA methylase (putative) [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271244|emb|CAD64148.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1]
 gi|300495169|gb|EFK30325.1| NOL1/NOP2/sun family protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308046053|gb|ADN98596.1| rRNA methylase (putative) [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 455

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 18/232 (7%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSK 273
               G  + Q+ SA    +         VLDLCAAPGGKT      +     +   ++++
Sbjct: 71  EHLAGAVYSQEPSAMTVGEFAKPEPGERVLDLCAAPGGKTTHLLSYLHQTGLLVTNEINR 130

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT 331
           +R+  L  N++R       I          +    FD +LVDAPCS  G  R+  D +  
Sbjct: 131 QRVTALGDNVERYGARNTVITNDTPAALAKELPGFFDRILVDAPCSGEGMFRKDHDAVQY 190

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
              D     A  QR++L + +  ++PGG +++S C+   ++ E+++  +L++ P   EL 
Sbjct: 191 WTPDYPAACAERQREILTEAVKMLRPGGHLIYSTCTFAPEEDEQMMAWLLKTYP-EFELE 249

Query: 392 PLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALR 439
           PL                   +    R+ P ++           G F   L 
Sbjct: 250 PLAKTAGMVDAKPEWADGNPELAKAARLFPHLMRGE--------GHFIAKLV 293


>gi|119472303|ref|ZP_01614463.1| predicted methyltransferase [Alteromonadales bacterium TW-7]
 gi|119445025|gb|EAW26321.1| predicted methyltransferase [Alteromonadales bacterium TW-7]
          Length = 479

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 18/255 (7%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCA 250
             +          +E   ++ +      G  +VQ+AS+ +P          + +VLD+ +
Sbjct: 68  WCSEGFWLERPSNEEQNLALGNTDLHLSGAMYVQEASSMLPPIALKQSIQTSHTVLDMAS 127

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKK 305
           APG KT+QL   + +   + A ++S  RL+ L   L R+ +    +   D   F     +
Sbjct: 128 APGSKTSQLAALMNNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGNYMYE 187

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD++L+DAPCS  GT+R+  D L     +  ++ A  Q+ L+      +KPGG +V+S 
Sbjct: 188 CFDSILLDAPCSGEGTVRKDADALKNWSIESNIQIAQIQKDLIKSAFYALKPGGTLVYST 247

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+L   ++++V + +L      +    L+  +        A + EG++ + P   +    
Sbjct: 248 CTLTPLENQQVCEYLLAEFGECIAPESLSDLFP---GADKATTAEGYLHVWPQTYDSE-- 302

Query: 426 VSSGMDGFFAVALRR 440
                 GFF    ++
Sbjct: 303 ------GFFIAKFKK 311


>gi|237749113|ref|ZP_04579593.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13]
 gi|229380475|gb|EEO30566.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13]
          Length = 443

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 109/461 (23%), Positives = 182/461 (39%), Gaps = 51/461 (11%)

Query: 2   KSGMNARLVSSHLL---SCV--MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           K+ +    ++  LL     V  + +  SL   L   +       +    +  ++ I  +T
Sbjct: 11  KTTLAPESLAFRLLGTAHAVARVEEGQSLPSALASVFSHPK---MDAATRGAIQDIAYLT 67

Query: 57  LRFLPRIDAVLDFVLISSLP----RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
            R L   + +++ +          +   +    L V       L    Y  VD AVE A 
Sbjct: 68  ERKLGLCEFLIEQLTRQPPSPPLLKTLLASSLALLVGENDEADLKYEPYTTVDQAVEAAA 127

Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIA----GISIIPEWFKERLENFYGKERVLAI 168
            +        LVN++LRR  REK  LL++           P W+ +     Y K    +I
Sbjct: 128 SEGTLVRAKGLVNAVLRRFLREKEILLEKSNLSLTAKWNYPSWWIKETRRIYPKNW-ESI 186

Query: 169 SDACISPLYIDLTVK---FDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEG 221
                +   + L V      +E +   L A   P           + P  +  +PGF+EG
Sbjct: 187 LHVGNTAPPLTLRVNKRKTTVEGYLADLEAAGHPATAIGPYAIRLDNPLPVYRIPGFSEG 246

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLR 280
           +  VQDA+A +   L    + + VLD CAAPGGK+  +  ++   + ALD    RL+K+ 
Sbjct: 247 LVSVQDAAAQLAAPLLELQDGMRVLDACAAPGGKSGHMLEMADIDLHALDSEPERLKKID 306

Query: 281 CNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
            NL RL L+A     +    ++     FD +L D PC+++G IRRHPD+ W R  +D  +
Sbjct: 307 ENLTRLQLHATIMAGDASKKNWWDGNAFDCILADVPCTASGIIRRHPDIRWLRRPEDAKE 366

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A    ++L      +KPGG ++ + CS+   +SE       + +       P       
Sbjct: 367 LAVISARILDNLWELLKPGGKLLLATCSVWPLESEWQADAFAKRNNAARLDAPG------ 420

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         ++ P   +  D      DG F    ++
Sbjct: 421 --------------QLFPTSDKLKD-----HDGLFYALFKK 442


>gi|305663869|ref|YP_003860157.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378438|gb|ADM28277.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
          Length = 367

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 130/323 (40%), Gaps = 32/323 (9%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDAC----ISPLYIDLTVKFDIETWAHKLNAVML 198
           A      ++  +R  +  G E   ++ +A     I P  I   ++   E    +L  +  
Sbjct: 50  AKTYGYLDYMVQRYIDILGLEETKSLLNAFENFKIQPTIICNFLRTSCEELLQQLYRLNF 109

Query: 199 PTGGIRLKELPESIVSLP----------GFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
               +        ++S P                +  +DA+++IP  +       S++D+
Sbjct: 110 RLELVSWCHHCYRVISSPKHPSIGSTHQYLKGLYYVYRDAASTIPPLILNPTKGSSIIDM 169

Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-- 303
           CAAPGGK   +   I     +   D+S +RLE L  N  R+   +  II  DA       
Sbjct: 170 CAAPGGKAIHISLLIRDEGFLILNDISIKRLEALISNYYRMGFKSYIIINHDATLLPKIL 229

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              FD V +DAPCS+ G I   P         D+VK    +  LLL  +   K GG +V+
Sbjct: 230 NYKFDYVFLDAPCSAEGAIMFDPSRKRKTSQGDLVKLVTREINLLLSALKLAKIGGRIVY 289

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-----DMAMALSPEGWIRITPD 418
           + CS+  +++E V+ KVL  +   + +       W S      ++  A   E  IRI P 
Sbjct: 290 TTCSIAPEENEYVISKVLSIAGSKIVIESPPFNLWSSGLRTFRNIEFARDVEKCIRIWPH 349

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
                      M+GFF   LR++
Sbjct: 350 --------KHMMEGFFICLLRKI 364


>gi|322375503|ref|ZP_08050016.1| NOL1/NOP2/sun family protein [Streptococcus sp. C300]
 gi|321279766|gb|EFX56806.1| NOL1/NOP2/sun family protein [Streptococcus sp. C300]
          Length = 434

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 120/299 (40%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+      ++       +          V    E+     +A+     G   
Sbjct: 1   MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPNTPWGYYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + GF     + Q+ +A +  Q+   L  + VLDL AAPGGK+ Q    + +
Sbjct: 60  KVSGKSPEHVTGF----VYSQEPAAQMVAQVAQPLPGMKVLDLAAAPGGKSTQLAAYLAN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+  D +    T    + A  QR++L   ++ +  GG +V+S C+   +++EE++  +
Sbjct: 176 MFRKQSDAMDYWSTAYPCQCANLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIIHWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L +     EL+P+         + +  +     R+ P   +            F   L+
Sbjct: 236 LDTY--DFELLPVEHVNGMVAGIDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280


>gi|262394196|ref|YP_003286050.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. Ex25]
 gi|262337790|gb|ACY51585.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. Ex25]
          Length = 478

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 125/265 (47%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           +    KL+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 57  DAKGWKLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANVERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       ++  A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLDIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L + +    +   AL+ EG++ I P
Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLETLFE---NANAALTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 294 QVYDCE--------GFFVARIRKLA 310


>gi|289580347|ref|YP_003478813.1| RNA methylase, NOL1/NOP2/sun family [Natrialba magadii ATCC 43099]
 gi|289529900|gb|ADD04251.1| RNA methylase, NOL1/NOP2/sun family [Natrialba magadii ATCC 43099]
          Length = 302

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 112/305 (36%), Gaps = 22/305 (7%)

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR---L 205
           P      + + +             +     +    +  T A + + V           L
Sbjct: 3   PFERYRPIIDDFEAFLAACERPLGNAVRVNTIKASPERATAALEEDDVAYEQAEWNPRVL 62

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
           +   +S  S      G    Q+  +++P  +        V D CAAPGGK  Q+   +  
Sbjct: 63  RLETDSPGSTWTSFHGFTHGQEEVSAVPPVVLDPQPGERVWDCCAAPGGKATQIAALMDD 122

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----AFDYCPKKLFDAVLVDAPCSS 318
              V A D +  R+  LR N +RL   +  +   D    +    P   FD  LVDAPCS 
Sbjct: 123 RGTVVANDNNLGRISALRFNAERLGATSLAVTNDDARNYSMKRFPFDEFDRTLVDAPCSC 182

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            GTIR++PD L       I   A  Q+ +L + I   + GG VV+S C+   +++E VVQ
Sbjct: 183 EGTIRKNPDALDNWSEGHIDTIAGIQKGILRRAIQTTREGGTVVYSTCTFAPEENEAVVQ 242

Query: 379 KVLRSSPIPVELVPLN----SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
             +      V    L         +  D A   + E   RI P          +   GFF
Sbjct: 243 HAIDEEDCRVVDFDLEMEHAPGLTEWRDEAFDSTLEQAARIYPHH--------NDTGGFF 294

Query: 435 AVALR 439
              L 
Sbjct: 295 VAKLE 299


>gi|270290284|ref|ZP_06196509.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
 gi|270281065|gb|EFA26898.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
          Length = 460

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 115/301 (38%), Gaps = 17/301 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ FKE+ +   G+E    ++    +                H  +     +     
Sbjct: 1   MRLPDGFKEKYQKLLGEEAQPFLASFDQAVEKGFRVNPLKGAAKLHDHSIDQPISYSDWG 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                +         G+ + Q+ SA +  ++        VLDLCAAPGGKT      +  
Sbjct: 61  YYGKVN-GKTIDHQNGLVYSQEPSAMLVGEIAHPQPGQKVLDLCAAPGGKTTYLASFMAQ 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              +   ++++ R + L  N++R  +    I+    D         FD ++VDAPCS  G
Sbjct: 120 EGLLVTNEINRGRAKVLAENVERFGIQNAVILNESPDRLVKKFNGYFDLIVVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P+ +     +   + A  QR++L   +  + P G +V+S C+   ++ E+++  +
Sbjct: 180 MFRKDPEAIEYWSLEYPEECARRQREILKSAMQLLAPNGNLVYSTCTFAPEEDEQIIAWL 239

Query: 381 LRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           L + P   +E V                +PE    IR+ P   +          G F   
Sbjct: 240 LENYPDLKMEPVARTENMDAGRPEWANGNPELAKAIRLFPHHFKGE--------GHFIAK 291

Query: 438 L 438
           L
Sbjct: 292 L 292


>gi|313904470|ref|ZP_07837846.1| RNA methylase, NOL1/NOP2/sun family [Eubacterium cellulosolvens 6]
 gi|313470612|gb|EFR65938.1| RNA methylase, NOL1/NOP2/sun family [Eubacterium cellulosolvens 6]
          Length = 532

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 111/310 (35%), Gaps = 25/310 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------P 199
             +PE F ER       E   A +D+        L V     +                 
Sbjct: 1   MNLPEAFVER-MKEMLGEEYRAFADSYNKTRLRGLRVNTMKISPEEFERIAPFPVKRVPW 59

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258
                  +        P +A GV+++Q+ SA  P           VLDLCAAPGGK  + 
Sbjct: 60  VRNGFFYDNDVFPAQHPYYAAGVYYLQEPSAMTPADRLPVEKGDRVLDLCAAPGGKATEL 119

Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314
              +     + A D S  R   L  NL+        +               FD +LVDA
Sbjct: 120 AAKLDGTGMLVANDASNSRTRALLRNLELFGTKNVMVTAELPAKLREVFPLYFDKILVDA 179

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+  +V+ T   + +   A  QR +L      + PGG++++S C+    + E
Sbjct: 180 PCSGEGMFRKAQEVIGTWSPERVEYFASQQRNILENAYEMLVPGGLLMYSTCTFSPDEDE 239

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSSGM 430
           +++   L   P  +EL+ + +    S                IRI P +++         
Sbjct: 240 QMISWFLEKYP-DMELLDIPAYEGFSPGRPEWADGREDLRKCIRIWPHVMDGE------- 291

Query: 431 DGFFAVALRR 440
            G F   L +
Sbjct: 292 -GHFLALLLK 300


>gi|331085063|ref|ZP_08334150.1| hypothetical protein HMPREF0987_00453 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408763|gb|EGG88228.1| hypothetical protein HMPREF0987_00453 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 471

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 17/263 (6%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +L  +     G             P +  G++++Q+ SA  P           V D+CAA
Sbjct: 53  ELKPIPWIENGFYYDGDHIQPSKHPYYFAGLYYLQEPSAMTPANRLPINPGDKVFDVCAA 112

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306
           PGGK  +    +     + A D+S  R + L  N++   +    +   E    +   ++ 
Sbjct: 113 PGGKATELGAKLDGTGVLVANDISNSRAKGLLKNIELFGIGNVLVLSEEPGKIEEYFEEY 172

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L+DAPCS  G  R+   ++   +       A  QR ++ Q    +KPGG++++S C
Sbjct: 173 FDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFAKIQRSIVTQAARMLKPGGMMLYSTC 232

Query: 367 SLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEK 422
           + D +++E  ++ +L   P     E+ P         +++ +   +    +R+ P  L  
Sbjct: 233 TFDSEENEGTIEYLLEQYPEFQICEIAPYEGFCPGLPEVSRSKREDLSRTVRMFPHKLHG 292

Query: 423 IDGVSSGMDGFFAVALRRLIQPK 445
                    G +   L++  QPK
Sbjct: 293 E--------GHYVALLQKGEQPK 307


>gi|15920491|ref|NP_376160.1| Sun family protein [Sulfolobus tokodaii str. 7]
 gi|15621274|dbj|BAB65269.1| 353aa long hypothetical sun protein [Sulfolobus tokodaii str. 7]
          Length = 353

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 132/317 (41%), Gaps = 27/317 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV------KFDIETWAH----K 192
           A       +  ER     G+E       +C  PL   +           +E        K
Sbjct: 44  ASKYKFLSYMVERYIKIMGEEETEDFLYSCSFPLKKSVRCNDLLIECNKLEKIMENKGFK 103

Query: 193 LNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
           L  V     G  +K+ P   S+ +   +  G +++Q  ++ +P  +     N  VLD+ A
Sbjct: 104 LEKVSWLKHGYIVKQYPSKPSLGATIEYLSGYYYIQGLASMVPPYVLDPNENDLVLDMAA 163

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL 306
           APG KT QL   + +   + A++ S+ R++ L  N++R+ +    ++  DA         
Sbjct: 164 APGSKTTQLAQLMKNKGLIVAVEKSRERIKSLYSNVNRMKIKNVVLLRADARILRKLNIP 223

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           F+ +L+D PCS  G I   P        +D+      Q +L+    + ++PGGI+V+S+C
Sbjct: 224 FNKILLDVPCSGEGLIPEDPSRKTKTTIEDLKIFFQNQLELIDIAYNILEPGGILVYSSC 283

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELV---PLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S+  +++E VV  ++ +     + +   P  S   +   +    S    IR  P      
Sbjct: 284 SIAPEENEAVVNYIIENYGAKTDKIYGYPATSGITEFNGIKFDESLRNCIRFYPH----- 338

Query: 424 DGVSSGMDGFFAVALRR 440
               SG +GFF   + +
Sbjct: 339 ---KSGTEGFFVCKIIK 352


>gi|315613428|ref|ZP_07888336.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis ATCC 49296]
 gi|315314424|gb|EFU62468.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis ATCC 49296]
          Length = 434

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+      ++       +          V    E+     +A+     G   
Sbjct: 1   MQFPEGFVEK-YEEILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGYYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K         P  A G+ + Q+ +A +  Q+   L  + VLDL AAPGGK+ Q    + +
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPLPGMKVLDLAAAPGGKSTQLAAYLAN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIILDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P+ +    TD   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPEAMDYWSTDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L +     EL+P+         + +  +     R+ P   +            F   L+
Sbjct: 236 LDTY--DFELLPVEHVNGMVAGIDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280


>gi|153835218|ref|ZP_01987885.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01]
 gi|148868284|gb|EDL67416.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01]
          Length = 478

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           E    KL+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 57  EAKGWKLSPVPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       +V+ A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQSSVVEIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L   +    +   AL+ EG++ I P
Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLKDLFE---NAEAALTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 294 QVYDCE--------GFFVARIRKLT 310


>gi|325661182|ref|ZP_08149809.1| hypothetical protein HMPREF0490_00542 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472689|gb|EGC75900.1| hypothetical protein HMPREF0490_00542 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 471

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 17/263 (6%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +L  +     G             P +  G++++Q+ SA  P           V D+CAA
Sbjct: 53  ELKPIPWIENGFYYDGDHVQPSKHPYYFAGLYYLQEPSAMTPANRLPINPGDKVFDVCAA 112

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306
           PGGK  +    +     + A D+S  R + L  N++   +    +   E    +   ++ 
Sbjct: 113 PGGKATELGAKLDGTGVLVANDISNSRAKGLLKNIELFGIGNVLVLSEEPGKIEEYFEEY 172

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L+DAPCS  G  R+   ++   +       A  QR ++ Q    +KPGG++++S C
Sbjct: 173 FDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFAKIQRSIVTQAARMLKPGGMMLYSTC 232

Query: 367 SLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEK 422
           + D +++E  ++ +L   P     E+ P         +++ +   +    +R+ P  L  
Sbjct: 233 TFDSEENEGTIEYLLEQYPEFQICEIAPYEGFCPGLPEVSRSKRGDLSRTVRMFPHKLHG 292

Query: 423 IDGVSSGMDGFFAVALRRLIQPK 445
                    G +   L++  QPK
Sbjct: 293 E--------GHYVALLQKGEQPK 307


>gi|295091824|emb|CBK77931.1| tRNA and rRNA cytosine-C5-methylases [Clostridium cf.
           saccharolyticum K10]
          Length = 538

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 126/337 (37%), Gaps = 29/337 (8%)

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177
               +          E            ++PE F+E++    GKE    +          
Sbjct: 46  SLGGVRPETGDSAETEIRTENAPGCRAELLPEDFREKMRKLLGKEYEAYLESFEKPCHNG 105

Query: 178 IDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           + +          ++L+         +          E        P +  G++++Q+ S
Sbjct: 106 LRVNTMKLSAEDWNRLSPFQTEPVPWIENGFYYNASDEGSGRPSRHPYYYAGLYYLQEPS 165

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286
           A  P  L        VLD+CAAPGGK+ +    +     + + D+S  R + L  NL+  
Sbjct: 166 AMTPANLLPVKPGDRVLDICAAPGGKSTELGARLRGEGLLFSNDISNSRAKALLKNLEMA 225

Query: 287 HLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +    +               FD +LVDAPCS  G  RR PD++ +            Q
Sbjct: 226 GIPNICVSSEAPEKLSEFLPEFFDCILVDAPCSGEGMFRREPDMIKSYRERGPEDYVPIQ 285

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDM 403
           R ++ + +  ++PGG +++S C+ D++++E  ++ +L   P   +  +P    +   I M
Sbjct: 286 RAIMEEAVKMLRPGGYLLYSTCTFDREENEGTIRYILDRHPDMSLCSLPHRHGFADGIGM 345

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +R+ P  +E          G F   L+R
Sbjct: 346 PE------CVRLFPHRIEGE--------GHFVALLQR 368


>gi|153812831|ref|ZP_01965499.1| hypothetical protein RUMOBE_03238 [Ruminococcus obeum ATCC 29174]
 gi|149831043|gb|EDM86132.1| hypothetical protein RUMOBE_03238 [Ruminococcus obeum ATCC 29174]
          Length = 469

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 18/252 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P +  G++++Q+ SA  P          +VLDLCAAPGGK  
Sbjct: 65  PWISNGYFYPEDVRPSFCPLYQAGLFYLQEPSAMTPASCLPVTPGENVLDLCAAPGGKAT 124

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
               ++     + A D+S  R   L  N++   +    +               F  +L+
Sbjct: 125 ALGAMLNGSGLLVANDISASRARALLRNIELFGITNAFVTNETPAHLGKHFPEFFHKILL 184

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+   +      +   + +  Q++L+LQ    ++PGG++++S C+   ++
Sbjct: 185 DAPCSGEGMFRKEEALARDWTPEKSHELSSLQKELILQAADMLRPGGLLLYSTCTFAPEE 244

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSS 428
            EEVV  +L + P  +EL+ L      +  +    + +  +     + P  ++       
Sbjct: 245 DEEVVSHLLENRP-DMELLELPEYEGFTSGVPEWGNGDPSLIRSVHLFPHKMQGE----- 298

Query: 429 GMDGFFAVALRR 440
              G F    R+
Sbjct: 299 ---GHFLALFRK 307


>gi|257096824|sp|A7N0K6|RSMF_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 478

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           E    KL+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 57  EAKGWKLSPVPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       +V+ A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQSSVVEIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L   +    +   AL+ EG++ I P
Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLKDLFE---NAEAALTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 294 QVYDCE--------GFFVARIRKLT 310


>gi|306824962|ref|ZP_07458305.1| NOL1/NOP2/sun family protein [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432789|gb|EFM35762.1| NOL1/NOP2/sun family protein [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 434

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+      ++       +          V    E+     +A+     G   
Sbjct: 1   MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K         P    G+ + Q+ +A +  Q+      + VLDL AAPGGK+ Q    + +
Sbjct: 60  KVS----GKSPEHVTGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +    TD   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSTDYPSQCASLQREILADAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L +     EL+P+         M +  +     R+ P   +            F   L+
Sbjct: 236 LDTY--EFELLPVEHLNGMVEGMGLPETA----RMYPHHFKGEGQ--------FVAHLQ 280


>gi|254383563|ref|ZP_04998913.1| RNA-binding Sun protein [Streptomyces sp. Mg1]
 gi|194342458|gb|EDX23424.1| RNA-binding Sun protein [Streptomyces sp. Mg1]
          Length = 308

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 85/253 (33%), Gaps = 24/253 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++  +L  V  +      +L      +        RD  L   +V  TLR     D
Sbjct: 42  PVRMLAFEVLRAVDERDAYANLVLPPLLRKARQDENFEARDAALATELVYGTLRRQGTYD 101

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           AV+   +   L      +  +L +   Q+L   +  +A V  +VE A+    +   AK V
Sbjct: 102 AVIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPSHAAVSASVELARVVLGD-GRAKFV 160

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR+++   ++               + +A     P W    L +  G  R     + 
Sbjct: 161 NAVLRKIAAHDLDAWLEKVAPPYEDDAEEHLAVYHSHPRWVVSALWDALGGGRAGIEDLL 220

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGV 222
           +A      + L  +    T    L+AV          +             +L    EG 
Sbjct: 221 EADNERPEVTLVARPGRSTTGELLDAVGEDSALPGRWSPYAVRMAEGGEPGALEAVREGR 280

Query: 223 WWVQDASASIPVQ 235
             VQD  + +   
Sbjct: 281 AGVQDEGSQLVAM 293


>gi|254508779|ref|ZP_05120891.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C
           [Vibrio parahaemolyticus 16]
 gi|219548299|gb|EED25312.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C
           [Vibrio parahaemolyticus 16]
          Length = 474

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 21/268 (7%)

Query: 184 FDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPV---QLFG 238
                   +L  V     G  +   E    + +      G++++Q+AS+ +PV       
Sbjct: 54  TRANEKGWQLYPVPWCDEGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFKSD 113

Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
           T    +VLD+ AAPG KT Q    + +   + A + S  R++ L  N++R  +    +  
Sbjct: 114 TDVYDTVLDMAAAPGSKTTQIAAKMANEGVLVANEYSSSRVKVLHANIERCGVRNAALSN 173

Query: 296 MDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            D   +     + F+AVL+DAPCS  GT+R+  D +       ++  +  Q+ L+     
Sbjct: 174 YDGRVFGGWLPEQFEAVLIDAPCSGEGTVRKDADAMKNWSKASVIDISNTQKDLIESAFH 233

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K GG +V+S C+L  +++++V   +  +    VE   L   +    +   +L+PEG++
Sbjct: 234 ALKVGGHLVYSTCTLSVEENQQVCHHLKETFGEAVEFDSLEDLFP---NADKSLTPEGFL 290

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
            I P   +          GFF   LR++
Sbjct: 291 HIFPQTYDCE--------GFFVARLRKV 310


>gi|189462549|ref|ZP_03011334.1| hypothetical protein BACCOP_03239 [Bacteroides coprocola DSM 17136]
 gi|189430710|gb|EDU99694.1| hypothetical protein BACCOP_03239 [Bacteroides coprocola DSM 17136]
          Length = 490

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 127/312 (40%), Gaps = 16/312 (5%)

Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194
           + E          +P  F  R  +  G+E+   +++A      + + +  +        +
Sbjct: 8   QHENHIEHIIYMNLPSDFVTRTRSLMGEEQFEKLAEALQHDTPVSIRLNRNKCKSVPAES 67

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAP 252
             +             +    P F  G ++VQ+AS+    Q         + +LDLCAAP
Sbjct: 68  TSIPWCETGYYLSTRPTFTFDPLFHAGSYYVQEASSMFVEQALRQYVHEPVVMLDLCAAP 127

Query: 253 GGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFD 308
           GGK+         G+ + A +V + R + L  NL +       +   D  D+ P + +FD
Sbjct: 128 GGKSTLARSVLPEGSMLVANEVMRNRSQVLAENLIKWGDEGVVVTNNDPADFAPLQAVFD 187

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L D PCS  G  R+ P  +     +++      QR++L    S +KPGG++++S C+ 
Sbjct: 188 VILTDVPCSGEGMFRKDPVAVDEWSVENVDICWQRQRRILTDIWSCLKPGGLLIYSTCTY 247

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
           +++++E+ V  + R   +  E++P+      +I   +        R  P           
Sbjct: 248 NREENEDNVSWIARE--LGAEILPVAVGEEWNITGNLTGGEFPVYRFLPHRTVGE----- 300

Query: 429 GMDGFFAVALRR 440
              G F   LR+
Sbjct: 301 ---GLFLAVLRK 309


>gi|16226071|gb|AAL16067.1|AF420249_1 NOL1R [Homo sapiens]
          Length = 429

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 155/410 (37%), Gaps = 29/410 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCGTQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  R    S +P + +         + V 
Sbjct: 93  ALLGRHQPRLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     K   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G   R        T     +
Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +P    L P   
Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           A W    ++     E  +R +P+             GFF   + R+  P+
Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVPR 429


>gi|182415839|ref|YP_001820905.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1]
 gi|177843053|gb|ACB77305.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1]
          Length = 488

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 103/469 (21%), Positives = 170/469 (36%), Gaps = 86/469 (18%)

Query: 1   MKSGMNARL----VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M + + AR      ++ LL+  + +R  +  LL+   G      L+  ++   + +V   
Sbjct: 1   MSAPVEARTTAWPAAARLLARWLDRRERVDELLESLGG-----SLTGTERARCQHLVFGA 55

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-----------------LDVA 99
           +R   RIDA +  ++  S     ++ + +L V+  +++                   +  
Sbjct: 56  IRHFGRIDAAIGRLVSHSPR---FATRAVLLVAGFELIEARAERGGAPTRASEAGTTNAP 112

Query: 100 DYA----------VVDLAVEQAKRDKENRHFAKLVN------SILRRVSREKIELLQRIA 143
           D            +V  AVEQ K+         +         +L      K+     +A
Sbjct: 113 DQPTPVVDGRVAKIVHHAVEQTKQLASPAEARMVNAVVRKLAGVLAEPPPPKLAPADVLA 172

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
                P W        +G     A+ +    P  +    +      A    +V  PT G 
Sbjct: 173 EYFSHPVWLVRSWLAQFGAAATRALLEWNQQPAPVYARWRSSFAEPAEDKLSVAAPTEGN 232

Query: 204 RLKELPE--------------SIVSLPGFAE---------------GVWWVQDASASIPV 234
            +                      +  GF E               G  ++QD +  IPV
Sbjct: 233 PVPVEAAKAAPKAEEPVPAWFKPTAWAGFFEIPPGHWTEIEPLLQRGRIYLQDPATRIPV 292

Query: 235 QLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           +L        VLD CAAPGGK       +   ++ A+D+   R+ +L+ NL R+    E 
Sbjct: 293 ELLAPAAGELVLDGCAAPGGKSLLIADSMRQGRLVAMDLPGARIGRLKENLARVPAGVEV 352

Query: 293 IIEMDAFDYCP---------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            +        P            F AVL+D PCS+TG +R   DV W     D  K    
Sbjct: 353 ALVQGDLRQDPAGLLREHKLPAQFPAVLLDVPCSNTGVMRHRVDVKWRLQEGDFRKHPLQ 412

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELV 391
           Q  LL      V PGG +V+S CS+D +++E VVQ+ L  + P   +L 
Sbjct: 413 QLALLRAAARLVAPGGRLVYSTCSIDTEENEHVVQEFLAGARPGEWKLE 461


>gi|295115834|emb|CBL36681.1| NOL1/NOP2/sun family. [butyrate-producing bacterium SM4/1]
          Length = 428

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 20/247 (8%)

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258
                  E        P +  G++++Q+ SA  P  L        VLD+CAAPGGK+ + 
Sbjct: 26  FYYNASDEGSGRPSRHPYYYAGLYYLQEPSAMTPANLLPVKPGDRVLDICAAPGGKSTEL 85

Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314
              +     + + D+S  R + L  NL+   +    +               FD +LVDA
Sbjct: 86  GARLRGEGLLFSNDISNSRAKALLKNLEMAGIPNICVSSEAPEKLSEFLPEFFDCILVDA 145

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  RR PD++ +            QR ++ + +  ++PGG +++S C+ D++++E
Sbjct: 146 PCSGEGMFRREPDMIKSYRERGPEDYVPIQRAIMEEAVKMLRPGGYLLYSTCTFDREENE 205

Query: 375 EVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
             ++ +L   P   +  +P    + + I M         +R+ P  +E          G 
Sbjct: 206 GTIRYILDRHPDMSLCSLPHRFGFAEGIGMPE------CVRLFPHRIEGE--------GH 251

Query: 434 FAVALRR 440
           FA  LRR
Sbjct: 252 FAALLRR 258


>gi|269839713|ref|YP_003324405.1| RNA methylase, NOL1/NOP2/sun family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791443|gb|ACZ43583.1| RNA methylase, NOL1/NOP2/sun family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 325

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 122/318 (38%), Gaps = 33/318 (10%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR 204
           +P  F  RLE      R   + +A   P  + L V     D      +L A       + 
Sbjct: 8   LPAEFLRRLERIVPDHRYPEVLEALCEPRVVALRVNPLRADRREVVAELEAEGFALEPVS 67

Query: 205 LKE--------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                          +++   +AEG  ++QD ++ +PV +        VLDL AAPG KT
Sbjct: 68  WYADAFILRTGTKRELMATAAYAEGKIYLQDLASMVPVLVLAPRPGERVLDLAAAPGSKT 127

Query: 257 AQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVL 311
            Q+   + +  ++ A DVS  R  KL  NL +  +       I  +       + FD  L
Sbjct: 128 TQMAALMGNSGEIVANDVSPARRFKLVANLRQQGVSIARVTAIRGEVLWRSYPEEFDRTL 187

Query: 312 VDAPCSSTGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           +DAPCS  G      P          +   A  Q  LL   +S  + GG++V+S C+L  
Sbjct: 188 LDAPCSMEGMFNCSDPATYEHWSPRKVKVLARRQAHLLRSAVSATRVGGVIVYSTCTLSP 247

Query: 371 QDSEEVVQKVLRSSPIPVELVPLN-------SAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           +++E VV  +L      VEL P+                 +         RI P  L   
Sbjct: 248 EENEGVVDWLLHKEGDAVELEPVELPGLELWPGLASWQGRSFDPRVSLTARILPSRL--- 304

Query: 424 DGVSSGMDGFFAVALRRL 441
                 M+GFF   +R++
Sbjct: 305 ------MEGFFVARIRKV 316


>gi|295695128|ref|YP_003588366.1| Fmu (Sun) domain protein [Bacillus tusciae DSM 2912]
 gi|295410730|gb|ADG05222.1| Fmu (Sun) domain protein [Bacillus tusciae DSM 2912]
          Length = 491

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 117/313 (37%), Gaps = 25/313 (7%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PTG 201
           +P+ F  R+    G E      +A   P    L V                         
Sbjct: 8   LPDLFVHRMRELLGPE-AEDFFEALRQPRSRGLRVNTLRARPDALAIRSPFSLSPVPWAP 66

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258
              L   P+     P +  GV+++Q+ +A     L        VLDL AAPGGK++    
Sbjct: 67  EGFLYHHPDRPGLHPWYDAGVYYIQEPAAMAAAVLLAPQPGEWVLDLAAAPGGKSSHLAA 126

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCS 317
            + +   + A + + RR   L  NL+RL +    I +           LFD VL+DAPC+
Sbjct: 127 RMENRGLLVANEPNPRRCRVLAQNLERLGVTNALITQEQPEALLRFAGLFDRVLLDAPCT 186

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
                R+ P V        I ++A   + +L     FV+PGG ++++ C+   +++E+V+
Sbjct: 187 GESMFRKDPSVTEAWSLRRITRNAERGQHILSVAADFVRPGGRLLYATCTFAPEENEQVI 246

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFF 434
            + LR       LVP             A   E      R+ P             DG F
Sbjct: 247 ARFLRER-RDFHLVPAELPGSSPGRPEWADGNEELSRCCRLWPHRTPA--------DGHF 297

Query: 435 AVALRRL--IQPK 445
              L R    +P+
Sbjct: 298 YALLERAEDARPR 310


>gi|156974634|ref|YP_001445541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio harveyi ATCC
           BAA-1116]
 gi|156526228|gb|ABU71314.1| hypothetical protein VIBHAR_02352 [Vibrio harveyi ATCC BAA-1116]
          Length = 501

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           E    KL+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 80  EAKGWKLSPVPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 139

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 140 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 199

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       +V+ A  Q+ L+      +KP
Sbjct: 200 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQSSVVEIADTQKDLIESAFHALKP 259

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L   +    +   AL+ EG++ I P
Sbjct: 260 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLKDLFE---NAEAALTEEGFLHIFP 316

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 317 QVYDCE--------GFFVARIRKLT 333


>gi|315427045|dbj|BAJ48662.1| tRNA and rRNA cytosine-C5-methylases [Candidatus Caldiarchaeum
           subterraneum]
          Length = 320

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 11/236 (4%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
           +        G  + Q   + +  +L        VLDLCAAPG KT      +     V A
Sbjct: 87  LTDSLWHMLGYVYAQGPVSILVTELLDVEPGHWVLDLCAAPGSKTTHIAARLRGEGVVVA 146

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
            DVS+ R++ L  N+ R  +    +   D   F Y  + +FD V++DAPC+S G   +  
Sbjct: 147 NDVSRTRIKALSSNMQRCGVVNGVLTLADGRRFGYRYRGMFDRVMIDAPCTSLGIGSKDW 206

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            VL    T    + +  Q  LL  G   +KPGGI+++S C+    ++E VV  +L     
Sbjct: 207 SVLRNWTTGSSARLSRLQTSLLFSGYMALKPGGILIYSTCTFHPFENETVVNNLLEK--- 263

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFAVALRR 440
             E   +       ++        G    +P++ +  +I    SG +GF+   +R+
Sbjct: 264 -FEEAEVLPIKLNGLECDWGFDEWGGRIFSPEVRKTVRIWPFQSGAEGFYIAKIRK 318


>gi|304384902|ref|ZP_07367248.1| NOL1/NOP2/sun family protein [Pediococcus acidilactici DSM 20284]
 gi|304329096|gb|EFL96316.1| NOL1/NOP2/sun family protein [Pediococcus acidilactici DSM 20284]
          Length = 460

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 115/301 (38%), Gaps = 17/301 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ FKE+ +   G+E    ++    +                H  +     +     
Sbjct: 1   MRLPDGFKEKYQKLLGEEAQPFLASFDQAVEKGFRVNPLKGAAKLHDHSIDQPISYSDWG 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
                +         G+ + Q+ SA +  ++        VLDLCAAPGGKT      +  
Sbjct: 61  YYGKVN-GKTIDHQSGLVYSQEPSAMLVGEIAHPQPGQKVLDLCAAPGGKTTYLASFMAQ 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              +   ++++ R + L  N++R  +    I+    D         FD ++VDAPCS  G
Sbjct: 120 EGLLVTNEINRGRAKVLTENVERFGIQNAVILNESPDRLVKKFNGYFDLIVVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P+ +     +   + A  QR++L   +  + P G +V+S C+   ++ E+++  +
Sbjct: 180 MFRKDPEAVEYWSLEYPEECARRQREILKSAMQLLAPNGNLVYSTCTFAPEEDEQIIAWL 239

Query: 381 LRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           L + P   +E V                +PE    IR+ P   +          G F   
Sbjct: 240 LENYPDLKMEPVARTENMDAGRPEWANGNPELAKAIRLFPHHFKGE--------GHFIAK 291

Query: 438 L 438
           L
Sbjct: 292 L 292


>gi|315931834|gb|EFV10789.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 279

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 18/235 (7%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
           + S+  F E  +++Q+ S+ +            VLD+CAAPGGK+      + +   +  
Sbjct: 57  LSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLAC 116

Query: 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
            ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+   I    +
Sbjct: 117 NEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE 176

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPI 386
               +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++  L+    +
Sbjct: 177 ----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKL 232

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  + L +   K+             RI P +           DGFF   LR+L
Sbjct: 233 ELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAKLRKL 278


>gi|205355486|ref|ZP_03222257.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346720|gb|EDZ33352.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 279

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 18/235 (7%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
           + S+  F E  +++Q+ S+ +            VLD+CAAPGGK+      + +   +  
Sbjct: 57  LSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLAC 116

Query: 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
            ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+   I    +
Sbjct: 117 NEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE 176

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPI 386
               +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++  L+    +
Sbjct: 177 ----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKL 232

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  + L +   K+             RI P +           DGFF   LR+L
Sbjct: 233 ELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAKLRKL 278


>gi|1772501|emb|CAA71351.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 240

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 22/246 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R ++   L  + + +     LL      +    LS +++ L+  +V  TL+  
Sbjct: 1   MKK-TSVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQNRGLLTELVYGTLQNK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +L   +     + K  + QLLR+S+ Q+ YL+ + D A +  AVE AK  + ++ 
Sbjct: 57  IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114

Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
            A  VN +LR + RE         + ++R+A  +  PEW  +   + YG E    I    
Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIH 174

Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224
           + P    L V       A  L+                  +K L  +I     F  G   
Sbjct: 175 LIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGEVS 234

Query: 225 VQDASA 230
           +QD S+
Sbjct: 235 IQDESS 240


>gi|146325696|sp|Q3IHA0|RSMF_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 482

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 18/257 (7%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCA 250
                        +E   ++ +      G  +VQ+AS+ +P         +   VLD+ +
Sbjct: 68  WCEEGFWLERPAAEEQNLALGNTDLHLSGAMYVQEASSMLPPIALKQSIEHTNYVLDMAS 127

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKK 305
           APG KT+QL   + +   + A ++S  RL+ L   L R+ +    +   D   F     +
Sbjct: 128 APGSKTSQLAALMNNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGNYMFE 187

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD++L+DAPCS  GT+R+  D L     D  ++ A  Q+ L+      +KPGG +V+S 
Sbjct: 188 CFDSILLDAPCSGEGTVRKDADALKNWSIDSNIEIAQVQKDLIKSAFYALKPGGTLVYST 247

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+L   +++ V   +L      +    L+  +      + A +PEG++ + P   +    
Sbjct: 248 CTLTPLENQHVCDFLLSEFGDCIIPESLSDLFP---GASKATTPEGYLHVWPQTFDSE-- 302

Query: 426 VSSGMDGFFAVALRRLI 442
                 GFF    ++  
Sbjct: 303 ------GFFIAKFKKQA 313


>gi|77360717|ref|YP_340292.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875628|emb|CAI86849.1| conserved protein of unknown function ; putative bacterial Fmu
           (Sun)/eukaryotic nucleolar NOL1/Nop2p domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 495

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 18/257 (7%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCA 250
                        +E   ++ +      G  +VQ+AS+ +P         +   VLD+ +
Sbjct: 81  WCEEGFWLERPAAEEQNLALGNTDLHLSGAMYVQEASSMLPPIALKQSIEHTNYVLDMAS 140

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKK 305
           APG KT+QL   + +   + A ++S  RL+ L   L R+ +    +   D   F     +
Sbjct: 141 APGSKTSQLAALMNNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGNYMFE 200

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD++L+DAPCS  GT+R+  D L     D  ++ A  Q+ L+      +KPGG +V+S 
Sbjct: 201 CFDSILLDAPCSGEGTVRKDADALKNWSIDSNIEIAQVQKDLIKSAFYALKPGGTLVYST 260

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+L   +++ V   +L      +    L+  +      + A +PEG++ + P   +    
Sbjct: 261 CTLTPLENQHVCDFLLSEFGDCIIPESLSDLFP---GASKATTPEGYLHVWPQTFDSE-- 315

Query: 426 VSSGMDGFFAVALRRLI 442
                 GFF    ++  
Sbjct: 316 ------GFFIAKFKKQA 326


>gi|270292469|ref|ZP_06198680.1| NOL1/NOP2/sun family protein [Streptococcus sp. M143]
 gi|270278448|gb|EFA24294.1| NOL1/NOP2/sun family protein [Streptococcus sp. M143]
          Length = 434

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 24/298 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+      ++       +          V    E+     +A+     G   
Sbjct: 1   MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGYYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ Q    + +
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +    TD   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSTDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L +     EL+P+         + +  +     R+ P   +            F   L
Sbjct: 236 LDTY--DFELLPVEHVNGMVAGIDLPETA----RMYPHHFKGEGQ--------FVAHL 279


>gi|317500362|ref|ZP_07958586.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898117|gb|EFV20164.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 468

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 107/270 (39%), Gaps = 17/270 (6%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           +++   +E     L  +     G             P +  G++++Q+ SA  P      
Sbjct: 41  ISIDRFLEIAPWPLRPIPWIENGFYYDGEKYQPAKHPYYFAGLYYLQEPSAMTPANRLPI 100

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--I 294
                VLD+CAAPGGK  +    +     + A D+S  R   L  N++   +    +   
Sbjct: 101 EAGDRVLDVCAAPGGKATELGAKLNGSGVLIANDLSNSRARGLLKNIELFGIGNVLVLSE 160

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E         + FD +L+DAPCS  G  R+   ++   +          QR ++ Q    
Sbjct: 161 EPGKLVNYFPEYFDKILIDAPCSGEGMFRKDRKMVKAWEEHGPEFFVKIQRSIITQAAQM 220

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---- 410
           +KPGG++++S C+   +++E+ ++ +L+  P            +    +  +LS      
Sbjct: 221 LKPGGMLLYSTCTFSPEENEQTIEFLLQEYPQFKICDIKGYEGFSDGILKASLSGNEQLK 280

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             IRI P  +E          G F   L++
Sbjct: 281 KTIRIFPHKMEGE--------GHFIALLKK 302


>gi|312220954|emb|CBY00895.1| hypothetical protein [Leptosphaeria maculans]
          Length = 377

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 16/216 (7%)

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  VLD+ AAPGGKT  +   + +   + A D +K R + L  N+ RL +   
Sbjct: 1   MALAPQENERVLDMTAAPGGKTTHIAALMKNTGCIFANDANKDRAKGLIGNIHRLGVRNA 60

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +    A ++      FD VL+DAPCS TG I +   V   +   D +K    Q++L+L 
Sbjct: 61  IVCNYSALEFPRVMGGFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLILA 120

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            I  V    K GG +V+S CS+  +++E+VVQ  L   P  V+LV     + K       
Sbjct: 121 AIDSVDHHSKTGGYIVYSTCSVTVEENEQVVQYALNKRPN-VKLVETGLTFGK-----EG 174

Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRR 440
            +  G     P   M+ +    +  +DGFF    ++
Sbjct: 175 FTKIGGKIFHPSMKMVRRYYPHTYNVDGFFVAKFKK 210


>gi|332200844|gb|EGJ14916.1| nop2p [Streptococcus pneumoniae GA41317]
          Length = 434

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADCLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|293365714|ref|ZP_06612423.1| tRNA/rRNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307703658|ref|ZP_07640600.1| NOL1/NOP2/sun family protein [Streptococcus oralis ATCC 35037]
 gi|291316082|gb|EFE56526.1| tRNA/rRNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307623065|gb|EFO02060.1| NOL1/NOP2/sun family protein [Streptococcus oralis ATCC 35037]
          Length = 434

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+      ++       +          V    E+     +A+     G   
Sbjct: 1   MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPNTPWGYYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + GF     + Q+ +A +  Q+   L  + VLDL AAPGGK+ Q    + +
Sbjct: 60  KVSGKSPEHVTGF----VYSQEPAAQMVAQVAQPLPGMKVLDLAAAPGGKSTQLAAYLAN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +   + D   + A  QRK+L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWNIDYPNQCASLQRKILEDAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L +     EL+P+         M +  +     R+ P   +            F   L+
Sbjct: 236 LDTY--DFELLPVEHVNGMVEGMDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280


>gi|271500348|ref|YP_003333373.1| NOL1/NOP2/sun family RNA methylase [Dickeya dadantii Ech586]
 gi|270343903|gb|ACZ76668.1| RNA methylase, NOL1/NOP2/sun family [Dickeya dadantii Ech586]
          Length = 482

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +  ++ AV     G  L    E    + +      G++++Q+AS+ +PV     G     
Sbjct: 61  YGWEMEAVPWCHDGFWLLNADEEAMRLGNALEHLSGLFYIQEASSMLPVSALFMGHDTPE 120

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD+ AAPG KT Q    + +   + A + S  R++ L  NL R  +    +   D   
Sbjct: 121 RVLDMAAAPGSKTTQIAAHLNNQGLIVANEYSASRVKVLHANLHRCGVSNTTLTHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ P  +     + I   A  QR L+L     +KPG
Sbjct: 181 FGNALPETFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRDLILSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++++S C+L+ Q++++V   +++  P   E+  L   + ++     AL+ EG++ + P 
Sbjct: 241 GVLIYSTCTLNHQENQQVCHWLMQQFPGACEIESLKDLFPQA---HQALTDEGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDSE--------GFFVARLRKTA 313


>gi|294662567|pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
          Length = 456

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G  + Q+ SA I            VLDLCAAPGGK+ Q          +   ++  +
Sbjct: 82  HQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFPK 141

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    +      +  P     FD ++VDAPCS  G  R+ P+ +   
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGXFRKDPNAIKEW 201

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +  +     Q+++L   I  +K  G +++S C+   +++EE++  ++ + P+ +E +P
Sbjct: 202 TEESPLYCQKRQQEILSSAIKXLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261

Query: 393 LNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L  +      +       E  IRI P   +          G F   L
Sbjct: 262 LTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE--------GHFVAKL 300


>gi|28898386|ref|NP_797991.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839322|ref|ZP_01991989.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260366026|ref|ZP_05778504.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           parahaemolyticus K5030]
 gi|260876618|ref|ZP_05888973.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           parahaemolyticus AN-5034]
 gi|81839808|sp|Q87PA5|RSMF_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|28806603|dbj|BAC59875.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747154|gb|EDM58142.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308094319|gb|EFO44014.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           parahaemolyticus AN-5034]
 gi|308114205|gb|EFO51745.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           parahaemolyticus K5030]
          Length = 478

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 124/263 (47%), Gaps = 20/263 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           E     L+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 57  EDKGWTLSPVPWCDNGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DAVLDTAAAPGSKTTQIAALMKNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       +++ A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLEIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L+  +    +   AL+ EG++ I P
Sbjct: 237 GGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLDGLFE---NANAALTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            + +          GFF   +R+
Sbjct: 294 QVYDCE--------GFFVARIRK 308


>gi|269962312|ref|ZP_06176663.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3]
 gi|269832972|gb|EEZ87080.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3]
          Length = 478

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 125/265 (47%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           E    KL+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 57  EAKGWKLSPVPWCETGFWIDADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNNESY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       +++ A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVIEIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L   +    +   AL+ EG++ I P
Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLEDLFE---NAEAALTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 294 QVYDCE--------GFFVARIRKLA 310


>gi|254168829|ref|ZP_04875670.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
 gi|197622266|gb|EDY34840.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
          Length = 301

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 13/254 (5%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           KL           +    +   +    + G +++QD S+  PV          +LD+ AA
Sbjct: 56  KLEKYKNLNAYRIIDMPVKHPGATIEHSLGYYYIQDLSSMAPVLALNPQRGEKILDMAAA 115

Query: 252 PGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           PG KT  +   +    + A D++  RL+ L  NL+RL +    I + DA        F+ 
Sbjct: 116 PGSKTTMIAELMREGTIVANDINFNRLKSLGGNLERLGITNVIITKKDAKKGNFGIKFNK 175

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  GT+R++P         +    A  Q+ +L      V  GGI+V+S C+ +
Sbjct: 176 ILLDAPCSGEGTVRKNPWGFRVVGDREHKMLARNQKIMLKNASRHVNNGGIIVYSTCTFN 235

Query: 370 KQDSEEVVQKVLRS---SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
             ++E VV+  + +    P+  ++   +    +          E + RI P +       
Sbjct: 236 PWENEGVVEYGIETLGLKPVHFDIPIPHFKGVEEWRGEKYEYGEYYKRIYPHL------- 288

Query: 427 SSGMDGFFAVALRR 440
                G F   L++
Sbjct: 289 -EDTGGMFIAVLKK 301


>gi|163800839|ref|ZP_02194739.1| Sun/nucleolar protein family protein [Vibrio sp. AND4]
 gi|159175188|gb|EDP59985.1| Sun/nucleolar protein family protein [Vibrio sp. AND4]
          Length = 478

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           +    KL+ V     G  +   E    + +      G++++Q+AS+ +PV          
Sbjct: 57  DAKGWKLSPVPWCETGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMTNETF 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            SVLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DSVLDTAAAPGSKTTQIAALMNNEGILVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       +++ A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVIEIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L   +    +   +L+ EG++ I P
Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLKDLFE---NAETSLTDEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 294 QVYDCE--------GFFVARIRKLT 310


>gi|153814848|ref|ZP_01967516.1| hypothetical protein RUMTOR_01063 [Ruminococcus torques ATCC 27756]
 gi|331089630|ref|ZP_08338529.1| hypothetical protein HMPREF1025_02112 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847879|gb|EDK24797.1| hypothetical protein RUMTOR_01063 [Ruminococcus torques ATCC 27756]
 gi|330404998|gb|EGG84536.1| hypothetical protein HMPREF1025_02112 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 468

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 107/270 (39%), Gaps = 17/270 (6%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           +++   +E     L  +     G             P +  G++++Q+ SA  P      
Sbjct: 41  ISIDRFLEIAPWPLRPIPWIENGFYYDGEKYQPAKHPYYFAGLYYLQEPSAMTPANRLPI 100

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--I 294
                VLD+CAAPGGK  +    +     + A D+S  R   L  N++   +    +   
Sbjct: 101 EAGDRVLDVCAAPGGKATELGAKLNGSGVLIANDLSNSRARGLLKNIELFGIGNVLVLSE 160

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E         + FD +L+DAPCS  G  R+   ++   +          QR ++ Q    
Sbjct: 161 EPGKLVNYFPEYFDKILIDAPCSGEGMFRKDRKMVKAWEEHGPEFFVKIQRSIITQAAQM 220

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---- 410
           +KPGG++++S C+   +++E+ ++ +L+  P            +    +  +LS      
Sbjct: 221 LKPGGMLLYSTCTFSPEENEQTIEFLLQEYPQFKICDIKGYEGFSDGILKASLSGNEQLK 280

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             IRI P  +E          G F   L++
Sbjct: 281 KTIRIFPHKMEGE--------GHFIALLKK 302


>gi|307706865|ref|ZP_07643667.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK321]
 gi|307617738|gb|EFN96903.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK321]
          Length = 434

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 114/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEAPISFPDAIPQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L+     +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LKEYDFDLLPVEHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280


>gi|293401629|ref|ZP_06645771.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304887|gb|EFE46134.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 442

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 15/254 (5%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +     +      +    + + + P    G++++Q+ SAS  V++        VLD+CAA
Sbjct: 51  ECKPSAICPETFYIPHQEKGLGNHPAHLAGLFYMQEPSASSAVEVLDVQEGDWVLDMCAA 110

Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKL 306
           PGGK+ Q+         + + ++  +R   L  N++RL      I     D         
Sbjct: 111 PGGKSTQIAAKLQHSGLLVSNEIEAKRAAVLMSNMERLGFSECMITNARPDELAKEMGGW 170

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VLVDAPCS  G  ++H   +     + +   A  Q+ +L      +K  GI+V+S C
Sbjct: 171 FDKVLVDAPCSGEGMFKKHAKAMDDWSVEHVASCAMRQKLILESAYETLKEEGILVYSTC 230

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +   +++EEVV + L+     +EL+     + +S      L      RI P         
Sbjct: 231 TYSMEENEEVVYEFLKHH-DDMELLDCQVNFGRSGFSYRDLDVTKVRRIFP--------- 280

Query: 427 SSGMDGFFAVALRR 440
               +G F   +++
Sbjct: 281 MDQGEGHFVAKMKK 294


>gi|253688235|ref|YP_003017425.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495489|sp|C6DFU6|RSMF_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|251754813|gb|ACT12889.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 484

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243
           +  +L  +     G  L    E    + +      G++++Q+AS+ +PV      N    
Sbjct: 61  YGWQLEPIPWCQEGFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNEALE 120

Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +VLD+ AAPG KT Q+     +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 121 TVLDVAAAPGSKTTQIAARLDNKGAIVANEYSASRVKVLHANISRCGVSNTAMTHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ P  +     + I + A  QR L+L     +KPG
Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSPESITEIAATQRDLILSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++++S C+L+KQ++++V   +    P   E   L   +    D   A + +G++ + P 
Sbjct: 241 GVMIYSTCTLNKQENQQVCHWLQAQFPDACEFESLRDLF---TDAERATTEDGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDSE--------GFFVARLRKTA 313


>gi|332637419|ref|ZP_08416282.1| tRNA and rRNA cytosine-C5-methylase [Weissella cibaria KACC 11862]
          Length = 466

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 18/226 (7%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
            + Q+ SA +  +L        VLDL AAPGGKT      +     + + ++ ++R   L
Sbjct: 78  IYSQEPSAQLVGELARPKPGERVLDLAAAPGGKTTHLASFMEQKGLLVSNEIFRKRAAIL 137

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R  +    +      +  PK    FD +++DAPCS  G  R+ P  +        
Sbjct: 138 SENVERFGVQNAIVTNHSPQELSPKFPQYFDKIVLDAPCSGEGMFRKDPAAIKYWHEHYP 197

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            ++A  QR++L + +  +KPGG +V+S C+   ++ E ++  ++   P  +E+V  +   
Sbjct: 198 EENATRQREILEEAVKMLKPGGQLVYSTCTFAPEEDERIIAWLISERP-DLEIVDADKYE 256

Query: 398 WKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALR 439
                          +    R+ P   +          G F   L 
Sbjct: 257 GMDDGKPEWADGNPDLKKTARLFPHHSDGE--------GHFMAKLV 294


>gi|307701939|ref|ZP_07638948.1| NOL1/NOP2/sun family protein [Streptococcus mitis NCTC 12261]
 gi|307616754|gb|EFN95942.1| NOL1/NOP2/sun family protein [Streptococcus mitis NCTC 12261]
          Length = 437

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          +    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRINPLKEATVSFPDAIPQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILADAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVDHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280


>gi|262193849|ref|YP_003265058.1| tRNA (cytosine-5-)-methyltransferase [Haliangium ochraceum DSM
           14365]
 gi|262077196|gb|ACY13165.1| tRNA (cytosine-5-)-methyltransferase [Haliangium ochraceum DSM
           14365]
          Length = 499

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 19/293 (6%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIE------TWAHKLNAVMLPTGGI---RLKELPESIV 213
           +    + DA ++P    L +           TW     A + P              +  
Sbjct: 24  DEWTNLRDALLAPQVPCLWLHPLRASAERVPTWLRADGAALEPMSWHPGGYRWRGARTPG 83

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
               +  G++ VQ+ ++ +PV L        +LDLCAAPG KTAQ+     +   V A D
Sbjct: 84  LHWSYQAGLYHVQEEASMVPVALLAPEPGERILDLCAAPGNKTAQIALALGNRGTVVAND 143

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVL 329
            S  RL  ++  + RL L    +   D   Y   ++ FD VLVDAPC++ G +R+     
Sbjct: 144 RSGGRLAAIQNAVTRLGLCNVSMTGCDGTRYPRQRRRFDKVLVDAPCTAEGAVRKLRPTR 203

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
              D+     +A  QR+LL + I   +PGG +V++ C+   +++E VV  VLR+ P    
Sbjct: 204 VCSDSFRRQITA-VQRQLLARAICLTRPGGRIVYATCTFAPEENELVVDAVLRALPGAAR 262

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVALRR 440
           L+P   A    +  A  ++      + P++   +       D  GFF   L R
Sbjct: 263 LLP---AEIPGLATAPGITAWQGRALAPELSRTLRLWPHLSDSGGFFCAVLER 312


>gi|261211631|ref|ZP_05925918.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC341]
 gi|260838981|gb|EEX65613.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC341]
          Length = 473

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 21/275 (7%)

Query: 178 IDLTVKFDIETWAH-KLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPV 234
           I +    +     H +L+ V     G  +   E    + +      G++++Q+AS+ +PV
Sbjct: 47  ISVAEFCERAAEKHWQLSPVPWCENGFWIEADESLVPLGNTAEHMAGLFYIQEASSMMPV 106

Query: 235 Q--LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                G     SVLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  + 
Sbjct: 107 SALFMGNEQYDSVLDMAAAPGSKTTQIAALMDNAGVLVANEFSASRVKVLHANIERCGIR 166

Query: 290 AEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
              +   D   +     + FDAVL+DAPCS  GTIR+ PD +     D I   A  Q+ L
Sbjct: 167 NAALTNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKAL 226

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           +      +K GG +V+S C+L  +++++V   + ++    V    L++ + ++   ++AL
Sbjct: 227 IESAFQALKVGGTLVYSTCTLSLEENQQVCWHLKQTYGDAVSFESLDNLFEQA---SIAL 283

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + EG++ I P M +          GFF   +R+L 
Sbjct: 284 TEEGFLHIFPQMYDCE--------GFFVAKIRKLA 310


>gi|218562286|ref|YP_002344065.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|112359992|emb|CAL34781.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
          Length = 279

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 24/269 (8%)

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQDASASIPVQLF 237
             IE    +     L    I +            + S+  F E  +++Q+ S+ +     
Sbjct: 23  TSIEELEKEFLKQNLKFKKINVYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNL 82

Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293
                 SVLD+CAAPGGK+      + +   +   ++S+ R   L+ NL    + A   +
Sbjct: 83  EVKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFM 142

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            +           FD +L+DAPCS+   I    +    +   +I   A  Q+KLL   + 
Sbjct: 143 KDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE----KSYKEIKNIAKTQKKLLHSALK 198

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            +K GG +V+S C+  K+++EEV++  L+    + +  + L +   K+            
Sbjct: 199 ALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKC 258

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            RI P +           DGFF   LR+L
Sbjct: 259 RRILPSLDY---------DGFFIAKLRKL 278


>gi|330718860|ref|ZP_08313460.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc fallax KCTC 3537]
          Length = 468

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 32/243 (13%)

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRL 276
            GV + Q+ SA    ++        VLDL AAPGGK+      +     +   ++   R 
Sbjct: 74  NGVVYSQEPSAQFVGEVVQPQPGEKVLDLSAAPGGKSTHLAAFMQQDGLLWTNEIFLNRA 133

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           + L  N++R+ +Y   +      +   K    FD +L+DAPCS  G  R+ PD +     
Sbjct: 134 KILNENIERMGIYNSIVSSQKPEELSAKLPQFFDKILIDAPCSGEGMFRKDPDAISYWSE 193

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
               + A  QR +L + +  +KPGG +V+S C+   ++ E+++  +L   P    +VP+ 
Sbjct: 194 SYPAECAQRQRDILAEAVKMLKPGGELVYSTCTFAPEEDEQMIAWLLSEYP-DFSVVPIE 252

Query: 395 SAYWKSIDMAMALSPE------------------GWIRITPDMLEKIDGVSSGMDGFFAV 436
                +         +                  G  R+ P +LE          G F  
Sbjct: 253 KVNGIADGRPEWADSQYVSGISDHSQTTHMTELKGTARLWPHLLEGE--------GHFVA 304

Query: 437 ALR 439
            L+
Sbjct: 305 KLK 307


>gi|259503456|ref|ZP_05746358.1| NOL1/NOP2/sun family protein [Lactobacillus antri DSM 16041]
 gi|259168534|gb|EEW53029.1| NOL1/NOP2/sun family protein [Lactobacillus antri DSM 16041]
          Length = 458

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 18/228 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G  + Q+ SA    ++        VLDLCAAPGGKT      +     + A ++ ++R  
Sbjct: 75  GAIYSQEPSAMYVGEVVAPQPGERVLDLCAAPGGKTTHLLAKMGGQGLLIANEIFRKRAL 134

Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  NL+R       +      +      + FD +LVDAPCS  G  R+ P  +     D
Sbjct: 135 VLAENLERWGTANTVVTNESPAELERQFPQFFDRILVDAPCSGEGMFRKEPAGMEYWTPD 194

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              + A  QRK+L   +  +KPGG +V+S C+   ++ E+    +L + P  + +VP+  
Sbjct: 195 YPAECANRQRKILASALKMLKPGGTLVYSTCTFAPEEDEQTAAWLLATYPG-LTMVPIKK 253

Query: 396 AYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                                +R+ P  +           G F    +
Sbjct: 254 YPGMDDGRPEWADGNPALANAVRLFPHHIAGE--------GHFIAKFQ 293


>gi|91085733|ref|XP_973505.1| PREDICTED: similar to CG6133 CG6133-PA [Tribolium castaneum]
          Length = 683

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 114/318 (35%), Gaps = 57/318 (17%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           L    +   W  +L    +       K     I        G    Q+  + IP  L   
Sbjct: 111 LPWYPNKLAWQLELTRKDIRRCEAYYKLHNFLISETE---HGTISRQETVSMIPPLLLDV 167

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKV---------TALDVSKRRLEKLRCNLDRLHLYA 290
             +  VLD+CAAPG KTAQL+                A DV  +R   L     RL+   
Sbjct: 168 QPHHKVLDMCAAPGSKTAQLLEMLHSNDDPIPSGYVIANDVDNKRCYMLVHQAKRLNSPC 227

Query: 291 EDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             +I  D+                +  FD VL D PCS  GT+R++PD+       + + 
Sbjct: 228 VAVINHDSAILPNLSASLPDGSMEQVQFDRVLCDVPCSGDGTLRKNPDIWMKWTPANGLN 287

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q ++L +G   +  GG +V+S CS++  ++E V+ ++L  +   ++LV ++S+   
Sbjct: 288 LHGIQSRILRRGAELLTVGGRLVYSTCSINPIENEAVIHRLLSETDGALQLVDVSSSLPG 347

Query: 400 SIDMAMALS-----------------PEGWI-RITPDMLE---------------KIDGV 426
              M    +                  E W   I P M                 +I   
Sbjct: 348 LKYMPGLENWLVGSRNLEFYSSYDEVDEKWQTTIRPQMFPPKSEDKHLYNLNRCMRILPH 407

Query: 427 SSGMDGFFAVALRRLIQP 444
                 FF   L +L +P
Sbjct: 408 HQNTGAFFVAVLEKL-KP 424


>gi|225859167|ref|YP_002740677.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 70585]
 gi|225719995|gb|ACO15849.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 70585]
          Length = 434

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +         + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLHYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|168483972|ref|ZP_02708924.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1873-00]
 gi|172042726|gb|EDT50772.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1873-00]
 gi|332201853|gb|EGJ15923.1| nop2p [Streptococcus pneumoniae GA47368]
          Length = 434

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADHLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|50121390|ref|YP_050557.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
           atrosepticum SCRI1043]
 gi|81827103|sp|Q6D4C8|RSMF_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|49611916|emb|CAG75365.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 484

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NL 243
           +  +L  +     G  L    E    + +      G++++Q+AS+ +P       N    
Sbjct: 61  YGWQLEPIPWCQEGFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPASALFHHNDAPG 120

Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           ++LD+ AAPG KT Q+     +   + A + S  R++ L  N+ R  +    I   D   
Sbjct: 121 TILDVAAAPGSKTTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ P  +     + I   A  QR L+L     +KPG
Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSQESITDIAATQRDLILSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++++S C+L++Q++++V + +    P   E   L+  +        A + EG++ + P 
Sbjct: 241 GVMIYSTCTLNRQENQQVCRWLQAQFPDACEFESLDDLF---AGAERATTEEGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
           + +          GFF   LR+
Sbjct: 298 IYDSE--------GFFVARLRK 311


>gi|443991|emb|CAA54369.1| fmu [Escherichia coli K-12]
          Length = 238

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 97/241 (40%), Gaps = 11/241 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + +S +D+ L++ +    LR L
Sbjct: 1   MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE--QAKRDKENR 118
            ++D +++ ++   +  K+ ++  L+ V + Q+LY  +  +A +   VE   A +  + +
Sbjct: 56  SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVERRIAIKRPQLK 115

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                V    +R   E +          + P W  +RL+  Y  E+  +I +A      +
Sbjct: 116 GLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPM 174

Query: 179 DLTV---KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            L +       ++W   L+   +    +R+  +      L  F   +    D       Q
Sbjct: 175 WLRINRTHHSRDSWLALLDEAGMKGFRMRITLMLYVWKHLHLFMRYLVLKTDGLPFRMHQ 234

Query: 236 L 236
            
Sbjct: 235 H 235


>gi|261821411|ref|YP_003259517.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
           wasabiae WPP163]
 gi|261605424|gb|ACX87910.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium wasabiae
           WPP163]
          Length = 484

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 123/264 (46%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243
           +  +L  +     G  L    E    + +      G++++Q+AS+ +PV      N+   
Sbjct: 61  YGWQLEPIPWCQEGFWLLNTEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNDALG 120

Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           ++LD+ AAPG KT Q+     +   + A + S  R++ L  N+ R  +    I   D   
Sbjct: 121 TILDVAAAPGSKTTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ P  +     + I   A  QR L+L     +KPG
Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSQESITDIAATQRDLILSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++++S C+L++Q++++V   +    P   E   L+  +    D  +A + EG++ + P 
Sbjct: 241 GVMIYSTCTLNRQENQQVCHWLQAQFPDACEFESLDDLF---ADAELATTEEGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDSE--------GFFVARLRKTA 313


>gi|318078496|ref|ZP_07985828.1| RNA-binding Sun protein [Streptomyces sp. SA3_actF]
          Length = 685

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 93/275 (33%), Gaps = 28/275 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L     ++  +     RD  L   +V  TLR     D
Sbjct: 22  PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 81

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V   VE A+    +   ++ V
Sbjct: 82  AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 140

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169
           N++LRR+SR  ++               + ++ +   P W    L +  G  R  +  + 
Sbjct: 141 NAVLRRISRNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVSALWDSLGGPRGGIEDLL 200

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222
            A      + L  +         L+A+                        ++P   +G 
Sbjct: 201 TADNERPEVTLVARPGRTDAEALLDALGEERALPGRWSPYAVRLTEGGEPGAVPAVRDGE 260

Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAPG 253
             VQD  +        +      +   LD CA PG
Sbjct: 261 AGVQDEGSQLVALALAKAPVEGRDALWLDACAGPG 295


>gi|320156455|ref|YP_004188834.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
           MO6-24/O]
 gi|319931767|gb|ADV86631.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
           MO6-24/O]
          Length = 472

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 20/259 (7%)

Query: 193 LNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVLDL 248
           L+ V     G  +   E    + +      G++++Q+AS+ +PV           SVLD 
Sbjct: 63  LHPVPWCETGFWIKADESKVPLGNTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDT 122

Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CP 303
            AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D   +    
Sbjct: 123 AAAPGSKTTQIAALMNNQGILVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWL 182

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FDAVL+DAPCS  GT+R+  D +     + +++ A  Q+ L+      +KPGG++V+
Sbjct: 183 PESFDAVLLDAPCSGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVY 242

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C+L ++++++V   +  +    V    L+S +        AL+ +G++ I P + +  
Sbjct: 243 STCTLSEEENQQVCHHLKHTFGDAVAFESLSSLF---DGAEKALTEDGFLHIFPQVYDSE 299

Query: 424 DGVSSGMDGFFAVALRRLI 442
                   GFF   +R+L 
Sbjct: 300 --------GFFVARIRKLA 310


>gi|269215676|ref|ZP_06159530.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Slackia
           exigua ATCC 700122]
 gi|269131163|gb|EEZ62238.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Slackia
           exigua ATCC 700122]
          Length = 345

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 143/339 (42%), Gaps = 32/339 (9%)

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
               R               P +F+ER+E  YG +    I + C +P    L        
Sbjct: 12  NDADRRIFSKEHARMETPSFPAYFRERVEEAYGADIARLILEGCSTPRRSSLRANALKAS 71

Query: 186 IETWAHKLNAVMLPTGGIRLKE--------LPESIVSLPGFAEGVWWVQDASASIPVQLF 237
               A  L+A  +   G+   E          E++     F  G  ++Q+ S+ +P  L 
Sbjct: 72  RNDVACALDAADISWKGVPWYEDAFLLDAGADEAMRETDAFERGEVYLQNLSSMLPALLL 131

Query: 238 GTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
               +  +LD+CAAPGGKT Q                ++TA ++   R EKL  NL R  
Sbjct: 132 DARPDTDILDMCAAPGGKTTQIAAFAAAKARAGAPEVRITACEMHAPRSEKLAYNLKRQG 191

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD-VLWTRDTDDIVKSACFQRK 346
            +A  ++  DA        FD +L+DAPC+ +GT+R H            + K A  QR 
Sbjct: 192 AHAVTVMRTDARRIDAFFRFDHILLDAPCTGSGTMRAHDPKAAARFTPHLLKKCAAAQRA 251

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL--RSSPIPVELVPLNSAYWKSIDMA 404
           LL + ++ +KPGG +V+S CS+  +++E  V++VL  +      EL+      + +  + 
Sbjct: 252 LLDRALTVLKPGGTMVYSTCSILPEENERTVREVLGRKEHADRFELLSPALPTFDADRLR 311

Query: 405 MALSPEGWIRITPDMLEKIDGVS--SGMDGFFAVALRRL 441
             L       + P  +E+   V      +GFF V +RR+
Sbjct: 312 AELP------LLPCTMEEALCVRPTDAYEGFFMVKIRRV 344


>gi|121613038|ref|YP_001000337.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|121504215|gb|EAQ72967.2| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 279

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 19/263 (7%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESI-VSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
           + E     L    +           ++I  S+  F E  +++Q+ S+ +           
Sbjct: 29  EKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQ 88

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAF 299
           SVLD+CAAPGGK+      + +   +   ++S+ R   L+ NL    + A   + +    
Sbjct: 89  SVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNI 148

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +L+DAPCS+   I    +    +   +I   A  Q+KLL   +  +K GG
Sbjct: 149 GNLCPLKFDKILLDAPCSTFAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGG 204

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
            +V+S C+  K+++EEV++  L+    + +  + L +   K+             RI P 
Sbjct: 205 ELVYSTCTFTKEENEEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPS 264

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
           +           DGFF   LR+L
Sbjct: 265 LDY---------DGFFIAKLRKL 278


>gi|297288127|ref|XP_001110343.2| PREDICTED: putative methyltransferase NSUN5-like isoform 1 [Macaca
           mulatta]
          Length = 470

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 169/450 (37%), Gaps = 40/450 (8%)

Query: 9   LVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
            V++ +L+ V  ++ S+   +    + +             + A+V  T R+   +DAV+
Sbjct: 5   AVAAGVLAGVENRQGSIKGLVYSSNFQNVKQ----------LYALVCETQRYSAVLDAVI 54

Query: 68  DFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH-FAKLVN 125
               L+ +  + +  L ++L   V ++L                 +     +   A+L  
Sbjct: 55  ASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKV 111

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
                 + + +E+  R   +S +P + +         + V        S      +   D
Sbjct: 112 HRGVSRNEDLLEVGSRPGPVSQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQG-RASSLDD 170

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +     K   +      + +      +   P +  G   +QD ++ +P  L        V
Sbjct: 171 LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLNPPPGSHV 230

Query: 246 LDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           +D CAAPG KT+ L     +  K+ A D+  +RL  +   L R  +   ++ E D     
Sbjct: 231 IDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGISCCELAEEDFLAVS 290

Query: 303 PKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF-- 354
           P          +L+D  CS +G   R        T     +   A FQ++ L   ++F  
Sbjct: 291 PSDPRYREVHYILLDPSCSGSGMPSRQLEEPGAGTPSPARLHALAGFQQRALCHALTFPS 350

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           +K    +++S CSL ++++E+VV+  L+ +P    L P   A W    ++     +  +R
Sbjct: 351 LK---RLIYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAKHCLR 406

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            +P+             GFF   + R+  P
Sbjct: 407 ASPETTLSG--------GFFIAVIERVEAP 428


>gi|37679825|ref|NP_934434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus
           YJ016]
 gi|37198570|dbj|BAC94405.1| sun/nucleolar protein family protein [Vibrio vulnificus YJ016]
          Length = 501

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 20/259 (7%)

Query: 193 LNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVLDL 248
           L+ V     G  +   E    + +      G++++Q+AS+ +PV           SVLD 
Sbjct: 92  LHPVPWCETGFWIEADESKVPLGNTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDT 151

Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CP 303
            AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D   +    
Sbjct: 152 AAAPGSKTTQIAALMNNQGILVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWL 211

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FDAVL+DAPCS  GT+R+  D +     + +++ A  Q+ L+      +KPGG++V+
Sbjct: 212 PESFDAVLLDAPCSGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVY 271

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C+L ++++++V   +  +    V    L+S +        AL+ +G++ I P + +  
Sbjct: 272 STCTLSEEENQQVCHHLKHTFGDAVAFESLSSLF---DGAEKALTEDGFLHIFPQVYDSE 328

Query: 424 DGVSSGMDGFFAVALRRLI 442
                   GFF   +R+L 
Sbjct: 329 --------GFFVARIRKLA 339


>gi|194397739|ref|YP_002038050.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae G54]
 gi|194357406|gb|ACF55854.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae G54]
          Length = 434

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARNFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ Q       
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYXAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|251789449|ref|YP_003004170.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Dickeya zeae Ech1591]
 gi|247538070|gb|ACT06691.1| RNA methylase, NOL1/NOP2/sun family [Dickeya zeae Ech1591]
          Length = 482

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNL 243
           +  +L AV     G  L    E    + +      G++++Q+AS+ +PV     G     
Sbjct: 61  YGWELEAVPWCDDGFWLLNADEETMRLGNALEHLSGLFYIQEASSMLPVSALLLGNDTPE 120

Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD+ AAPG KT Q+     +   + A + S  R++ L  NL R  +    +   D   
Sbjct: 121 RVLDMAAAPGSKTTQIAARLHNQGVIIANEYSASRVKVLHANLHRCGVSNTALTHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ P  +     + I   A  QR+L+L     +KPG
Sbjct: 181 FGSALPETFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRELILSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++++S C+L+ Q++++V + +++  P   E+  L   +  +     AL+ +G++ + P 
Sbjct: 241 GVLIYSTCTLNHQENQQVCRWLMQQFPDACEIESLKDLFPHA---HRALTEDGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDSE--------GFFVARLRKTA 313


>gi|328473635|gb|EGF44470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio
           parahaemolyticus 10329]
          Length = 478

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 124/263 (47%), Gaps = 20/263 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           E     L+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 57  EDKGWTLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DAVLDTAAAPGSKTTQIAALMKNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       +++ A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLEIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L+  +    +   AL+ EG++ I P
Sbjct: 237 GGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLDGLFE---NANAALTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            + +          GFF   +R+
Sbjct: 294 QVYDCE--------GFFVARIRK 308


>gi|315126373|ref|YP_004068376.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas sp.
           SM9913]
 gi|315014887|gb|ADT68225.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas sp.
           SM9913]
          Length = 524

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 111/255 (43%), Gaps = 18/255 (7%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCA 250
                        +E   ++ +      G  +VQ+AS+ +P          + +VLD+ +
Sbjct: 113 WCDEGFWLERPNDEEQNLALGNTDLHLSGAMYVQEASSMLPPMALKQSLQTSNTVLDMAS 172

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKK 305
           APG KT+QL   + +   + A ++S  RL+ L   L R+ +    +   D   F     +
Sbjct: 173 APGSKTSQLAALMNNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVVFGNYMFE 232

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD++L+DAPCS  GT+R+  D L     +  +  A  Q+ L+      +KPGG +V+S 
Sbjct: 233 CFDSILLDAPCSGEGTVRKDSDALKNWSIESNITIAQVQKDLIKSAFYALKPGGTLVYST 292

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+L   ++++V   +L      +    L+  +        A + EG++ + P   +    
Sbjct: 293 CTLTPLENQQVCSALLDEFGEYISPESLSDLFP---GADKATTTEGYLHVWPQTFDSE-- 347

Query: 426 VSSGMDGFFAVALRR 440
                 GFF    ++
Sbjct: 348 ------GFFIAKFKK 356


>gi|300797713|ref|NP_001178522.1| NOL1/NOP2/Sun domain family, member 5 [Rattus norvegicus]
 gi|109497090|ref|XP_001071177.1| PREDICTED: NOL1/NOP2/Sun domain family, member 5 [Rattus
           norvegicus]
 gi|149063048|gb|EDM13371.1| NOL1/NOP2/Sun domain family, member 5 (predicted) [Rattus
           norvegicus]
          Length = 451

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 169/442 (38%), Gaps = 38/442 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ +L+ V  ++ SL  L+      S F+ L Q     + A+V  T R+   +DAV+   
Sbjct: 7   AAAVLAGVESRQGSLKGLV----YSSNFQNLKQ-----LYALVCETQRYSAVLDAVIASA 57

Query: 71  -LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
            L+ +  + +  L ++L   V + L L                R +           + R
Sbjct: 58  GLLRAEKKLRPHLAKVL---VYE-LLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHR 113

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
            VSR +  L +R      +P + +        ++ +        S      +   D+ T 
Sbjct: 114 GVSRNEDLLQERPGQAHQVPRFVRVNTLKTCPEDAIDYFKRQGFSYQG-RASSLEDLRTL 172

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
             +   +      + +      +   P +  G   +QD ++ +P  L        V+D C
Sbjct: 173 KGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDAC 232

Query: 250 AAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--- 303
           AAPG KT+ +     +  K+ A D   +RL  +   L R  +   ++ E D     P   
Sbjct: 233 AAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLLARAGVSCCEVAEKDFLTVSPSDQ 292

Query: 304 -KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPG 358
                  +L+D  CS +G + R        T   + +   A FQ++ L   + F  ++  
Sbjct: 293 RYGQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERLQALAGFQQRALCHALRFPSLQ-- 350

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
             +V+S CSL ++++E+VVQ+ L+ +     L P+    W    ++     E  +R +P+
Sbjct: 351 -RLVYSTCSLCQEENEDVVQEALQQNSGTFRLAPVLPT-WPHRGLSTFPGSEHCLRASPE 408

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
                        GFF     R
Sbjct: 409 TTL--------TGGFFIAVFER 422


>gi|18977925|ref|NP_579282.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus furiosus DSM
           3638]
 gi|18893693|gb|AAL81677.1| putative nucleolar protein I (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 311

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 17/271 (6%)

Query: 179 DLTVKFDIETWAHKLNAVMLPTGG-IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
            L     +     +L  +    G    +K    +   L  ++ G+   Q+AS+ IP  + 
Sbjct: 47  HLNEIKSLLEEKFELEPIPWTKGEGFFIKRYEVNFGELIEYSLGLIIPQEASSMIPPVVL 106

Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD+ AAPG KT Q    + +   + A D  + R   L  NL++  +    + 
Sbjct: 107 DPQPGELVLDMAAAPGSKTTQIAQYMNNEGCIIANDAKRDRANILISNLNKAGVLIAKVT 166

Query: 295 EMDA-FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
             D  +    +  FD +L+DAPCSS G IR++     T     +   +  Q++L+L    
Sbjct: 167 VKDGAYFRRYENTFDKILLDAPCSSVGMIRKNFKFARTWSMGKVYYHSKLQKRLILAAYK 226

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE- 410
            +KPGG++V+S C++D  ++EEVV  +L+ +   +E +  PL S            S E 
Sbjct: 227 ALKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKINLPLKSTEPVLEWEGKKYSDEL 286

Query: 411 -GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +RI P          +  + F+   +R+
Sbjct: 287 KKTLRIHPQD--------NDTEAFYIAKIRK 309


>gi|294778263|ref|ZP_06743689.1| NOL1/NOP2/sun family protein [Bacteroides vulgatus PC510]
 gi|294447891|gb|EFG16465.1| NOL1/NOP2/sun family protein [Bacteroides vulgatus PC510]
          Length = 475

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 127/302 (42%), Gaps = 19/302 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F+ R   + G+E   A+  A  +   + + V  +   W+ ++    +      +
Sbjct: 1   MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVAGEPVLWASAGV 58

Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260
                      P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+      
Sbjct: 59  YLSQRPTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHARSV 118

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318
              G+ + A +V + R + L  NL +       +   D        ++FD VL D PCS 
Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNAEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +    TD++      QR++L      +KPGG++++S C+ ++++ EE V 
Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEENVA 238

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +       +  VP+ S +    ++A    P    R  P  ++          GFF   L
Sbjct: 239 WIADELGAEILKVPVASEWGIIGNLAGQDFP--VYRFLPHRVKGE--------GFFLAVL 288

Query: 439 RR 440
           R+
Sbjct: 289 RK 290


>gi|254882762|ref|ZP_05255472.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 4_3_47FAA]
 gi|319643930|ref|ZP_07998505.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_1_40A]
 gi|254835555|gb|EET15864.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 4_3_47FAA]
 gi|317384454|gb|EFV65421.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_1_40A]
          Length = 475

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 127/302 (42%), Gaps = 19/302 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F+ R   + G+E   A+  A  +   + + V  +   W+ ++    +      +
Sbjct: 1   MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVAGEPVLWASAGV 58

Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260
                      P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+      
Sbjct: 59  YLSQRPTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHARSV 118

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318
              G+ + A +V + R + L  NL +       +   D        ++FD VL D PCS 
Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNAEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +    TD++      QR++L      +KPGG++++S C+ ++++ EE V 
Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEENVA 238

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +       +  VP+ S +    ++A    P    R  P  ++          GFF   L
Sbjct: 239 WIADELGAEILKVPVASEWGIIGNLAGQDFP--VYRFLPHRVKGE--------GFFLAVL 288

Query: 439 RR 440
           R+
Sbjct: 289 RK 290


>gi|315038492|ref|YP_004032060.1| nucleolar protein [Lactobacillus amylovorus GRL 1112]
 gi|312276625|gb|ADQ59265.1| putative nucleolar protein [Lactobacillus amylovorus GRL 1112]
          Length = 457

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 17/302 (5%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +P+ FK++  +  G E+   +  A          V           +            
Sbjct: 3   NLPKDFKDKYRDLLGAEQAEKMFTAMNESSKKAFRVNTLKNKTQISYSLDNPVPEIKHAY 62

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263
               S    P +  G  + QD +A  P  +        VLDLCAAPGGKT    + + + 
Sbjct: 63  YGEIS-GEDPEWVSGYVYSQDPAAMFPAAISTVKPGEKVLDLCAAPGGKTTALGEQLKNK 121

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321
             + A ++S  R + LR N++R  +    +      +        FD +LVDAPCS  G 
Sbjct: 122 GLLVANEISISRAKILRENVERWGISNALVTNETPENLAAAFPDFFDVILVDAPCSGEGM 181

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R++P  +       ++  A  QR +L + +  +KPGG +V+S C+   ++ E++V  + 
Sbjct: 182 FRKNPAAIDYWSQAYVLTCAQRQRMILAEAVKMLKPGGRLVYSTCTFAPEEDEKIVNWLT 241

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMA---LSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           +     +    +      +               +R  P                FA  L
Sbjct: 242 QEYDFTILDSQIKDERVSAGRPEWGNDNPDLTRTLRFWPQDGVGEGQ--------FAAIL 293

Query: 439 RR 440
           ++
Sbjct: 294 QK 295


>gi|27365942|ref|NP_761470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus
           CMCP6]
 gi|81844637|sp|Q8D9F3|RSMF_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|146325711|sp|Q7MKY6|RSMF_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|27362091|gb|AAO10997.1| Ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus
           CMCP6]
          Length = 472

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 20/259 (7%)

Query: 193 LNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVLDL 248
           L+ V     G  +   E    + +      G++++Q+AS+ +PV           SVLD 
Sbjct: 63  LHPVPWCETGFWIEADESKVPLGNTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDT 122

Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CP 303
            AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D   +    
Sbjct: 123 AAAPGSKTTQIAALMNNQGILVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWL 182

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FDAVL+DAPCS  GT+R+  D +     + +++ A  Q+ L+      +KPGG++V+
Sbjct: 183 PESFDAVLLDAPCSGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVY 242

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C+L ++++++V   +  +    V    L+S +        AL+ +G++ I P + +  
Sbjct: 243 STCTLSEEENQQVCHHLKHTFGDAVAFESLSSLF---DGAEKALTEDGFLHIFPQVYDSE 299

Query: 424 DGVSSGMDGFFAVALRRLI 442
                   GFF   +R+L 
Sbjct: 300 --------GFFVARIRKLA 310


>gi|325956908|ref|YP_004292320.1| nucleolar protein [Lactobacillus acidophilus 30SC]
 gi|325333473|gb|ADZ07381.1| nucleolar protein [Lactobacillus acidophilus 30SC]
          Length = 457

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 17/302 (5%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +P+ FK++  +  G E+   +  A          V           +            
Sbjct: 3   NLPKDFKDKYRDLLGAEQAEKMFTAMNESSKKAFRVNTLKNKTQISYSLDNPVPEIKHAY 62

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263
               S    P +  G  + QD +A  P  +        VLDLCAAPGGKT    + + + 
Sbjct: 63  YGEIS-GEDPEWVSGYVYSQDPAAMFPATISTVKPGEKVLDLCAAPGGKTTALGEQLKNK 121

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321
             + A ++S  R + LR N++R  +    +      +        FD +LVDAPCS  G 
Sbjct: 122 GLLVANEISISRAKILRENVERWGISNALVTNETPENLAAAFPDFFDVILVDAPCSGEGM 181

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R++P  +       ++  A  QR +L + +  +KPGG +V+S C+   ++ E++V  + 
Sbjct: 182 FRKNPAAIDYWSQAYVLICAQRQRMILAEAVKMLKPGGRLVYSTCTFAPEEDEKIVNWLT 241

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMA---LSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           +     +    +      +               +R  P                FA  L
Sbjct: 242 QEYDFTILDSQIKDERVSAGRPEWGNDNPDLTRTLRFWPQDGVGEGQ--------FAAIL 293

Query: 439 RR 440
           ++
Sbjct: 294 QK 295


>gi|229815613|ref|ZP_04445940.1| hypothetical protein COLINT_02664 [Collinsella intestinalis DSM
           13280]
 gi|229808843|gb|EEP44618.1| hypothetical protein COLINT_02664 [Collinsella intestinalis DSM
           13280]
          Length = 339

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 20/314 (6%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209
           E  +E L + +   R   ++    +       V   ++        V        L    
Sbjct: 25  ERTRELLADGFDAARARPVTLRANTLKATSDQVSAALDAAGIGYARVPWYEDAFVLDGAR 84

Query: 210 ES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265
           E  +  L  + +G+ ++Q  S+ +P  +   L    +LD+C+APGGKT+Q+     +GA 
Sbjct: 85  EREVWGLDIYRDGLVYLQSLSSMLPPLILDPLTGADILDMCSAPGGKTSQIAALTTNGAH 144

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR- 324
           +TA ++S  R EKL  NLD+L     +I+  DA        FD +L+DAPC+ TGT R  
Sbjct: 145 LTACEMSAPRAEKLAYNLDKLGAQNVNIMRTDARRLDEFFSFDQILLDAPCTGTGTYRTG 204

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
                       + K    QR LL + ++ +KPGG + +S CS+  ++++E V+  L+  
Sbjct: 205 DERAEKRMTPQLLDKVVRSQRALLDRALTVLKPGGTLAYSTCSVLPEENDEQVRAALKRH 264

Query: 385 ------PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM-------D 431
                 P+    V    +  +   + +A + EG +   P M        +         +
Sbjct: 265 RDCKVVPVLAGNVDDGQSDPEERIITIAHADEGEL-AWPIMNLPNSLEGTLTLAPTRLYE 323

Query: 432 GFFAVALRRLIQPK 445
           GF+   +++   P+
Sbjct: 324 GFYVAVIQKQA-PR 336


>gi|14591319|ref|NP_143397.1| nucleolar protein [Pyrococcus horikoshii OT3]
 gi|3257964|dbj|BAA30647.1| 312aa long hypothetical nucleolar protein [Pyrococcus horikoshii
           OT3]
          Length = 312

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 19/268 (7%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +E              G  +     +   L  ++ G+   Q+AS+ IP  +        +
Sbjct: 55  LEEKFELERIPWTKGEGFYINSYSVNYGELIEYSLGLIIPQEASSMIPPVVLDPKPGELI 114

Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD+ AAPG KT Q    + +   + A D  + R   L  NL R  +    +   D   Y 
Sbjct: 115 LDMAAAPGSKTTQIAQYMENDGCIIANDAKRDRANILIANLTRAGVLIAKVTVRDGAHYA 174

Query: 303 P-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             +  FD +L+DAPCSS G IR++     T     +   +  Q+KL+L     +KPGG++
Sbjct: 175 KYEDTFDRILLDAPCSSVGMIRKNFKFAKTWSLGKVYYHSRLQKKLILAAYRALKPGGVL 234

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE--GWIRITP 417
           V+S C++D  ++EEVV  +L+ +   ++ +  P+ S            S E    IRI P
Sbjct: 235 VYSTCTVDPLENEEVVDYLLQKTDAKLKKINLPIKSTEPVLEWEGRRYSEELKKTIRIHP 294

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                     +  + F+     ++I+PK
Sbjct: 295 QD--------NDTEAFYIA---KIIKPK 311


>gi|168491306|ref|ZP_02715449.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC0288-04]
 gi|183574356|gb|EDT94884.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC0288-04]
          Length = 434

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P    G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHTTGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKIFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|327183687|gb|AEA32134.1| nucleolar protein [Lactobacillus amylovorus GRL 1118]
          Length = 457

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 17/302 (5%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +P+ FK++  +  G E+   +  A          V           +            
Sbjct: 3   NLPKDFKDKYRDLLGAEQAEKMFTAMNESSKKAFRVNTLKNKTQISYSLDNPVPEIKHAY 62

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263
               S    P +  G  + QD +A  P  +        VLDLCAAPGGKT    + + + 
Sbjct: 63  YGEIS-GEDPEWVSGYVYSQDPAAMFPAAISTVKPGEKVLDLCAAPGGKTTALGEQLKNK 121

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321
             + A ++S  R + LR N++R  +    +      +        FD +LVDAPCS  G 
Sbjct: 122 GLLVANEISISRAKILRENVERWGISNALVTNETPENLAAAFPDFFDVILVDAPCSGEGM 181

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R++P  +       ++  A  QR +L + +  +KPGG +V+S C+   ++ E++V  + 
Sbjct: 182 FRKNPAAINYWSQAYVLTCAQRQRMILAEAVKMLKPGGRLVYSTCTFAPEEDEKIVNWLT 241

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMA---LSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           +     +    +      +               +R  P                FA  L
Sbjct: 242 QEYDFTILDSQIKDERVSAGRPEWGNDNPDLTRTLRFWPQDGVGEGQ--------FAAIL 293

Query: 439 RR 440
           ++
Sbjct: 294 QK 295


>gi|307709068|ref|ZP_07645527.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK564]
 gi|307620014|gb|EFN99131.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK564]
          Length = 434

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEAPVSFPDAIPQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280


>gi|168493306|ref|ZP_02717449.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC3059-06]
 gi|225854849|ref|YP_002736361.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae JJA]
 gi|183576723|gb|EDT97251.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC3059-06]
 gi|225722175|gb|ACO18028.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae JJA]
          Length = 434

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|149011643|ref|ZP_01832839.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP19-BS75]
 gi|221232142|ref|YP_002511295.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae ATCC 700669]
 gi|147764074|gb|EDK71006.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP19-BS75]
 gi|220674603|emb|CAR69166.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae ATCC 700669]
          Length = 434

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|116516379|ref|YP_816700.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae D39]
 gi|148997544|ref|ZP_01825149.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP11-BS70]
 gi|149002792|ref|ZP_01827718.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS69]
 gi|168575861|ref|ZP_02721776.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae MLV-016]
 gi|182684360|ref|YP_001836107.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CGSP14]
 gi|237649322|ref|ZP_04523574.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CCRI 1974]
 gi|237820947|ref|ZP_04596792.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|303254557|ref|ZP_07340661.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS455]
 gi|303258998|ref|ZP_07344977.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP-BS293]
 gi|303261682|ref|ZP_07347629.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303264351|ref|ZP_07350271.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS397]
 gi|303265850|ref|ZP_07351747.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS457]
 gi|303268183|ref|ZP_07353982.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS458]
 gi|307068055|ref|YP_003877021.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
           AP200]
 gi|116076955|gb|ABJ54675.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae D39]
 gi|147756599|gb|EDK63640.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP11-BS70]
 gi|147759086|gb|EDK66080.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS69]
 gi|182629694|gb|ACB90642.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CGSP14]
 gi|183578178|gb|EDT98706.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae MLV-016]
 gi|302598525|gb|EFL65567.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS455]
 gi|302637262|gb|EFL67750.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302639941|gb|EFL70397.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP-BS293]
 gi|302642262|gb|EFL72610.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS458]
 gi|302644585|gb|EFL74835.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS457]
 gi|302646163|gb|EFL76390.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS397]
 gi|306409592|gb|ADM85019.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
           AP200]
 gi|332074983|gb|EGI85455.1| nop2p [Streptococcus pneumoniae GA41301]
          Length = 434

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|227111581|ref|ZP_03825237.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 484

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243
           +  +L  +     G  L    E    + +      G++++Q+AS+ +PV      N+   
Sbjct: 61  YGWQLEPIPWCQEGFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNDALD 120

Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +VLD+ AAPG KT Q+     +   + A + S  R++ L  N+ R  +    I   D   
Sbjct: 121 TVLDVAAAPGSKTTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ P  +     + I   A  QR L+L     +KPG
Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSQESITDIAATQRDLILSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++++S C+L++Q++++V   +    P   E   L++ +    D   A + EG++ + P 
Sbjct: 241 GVMIYSTCTLNRQENQQVCHWLQTQFPDACEFESLHALF---TDAEHATTEEGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDSE--------GFFVARLRKTA 313


>gi|116492681|ref|YP_804416.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
           25745]
 gi|116102831|gb|ABJ67974.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
           25745]
          Length = 458

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 16/230 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G+ + Q+ SA +  +         VLDLCAAPGGKT      +     + + ++++ 
Sbjct: 72  HQSGLVYSQEPSAMLVGEFAHPKPGQKVLDLCAAPGGKTTYLASFMDQQGLLVSNEINRG 131

Query: 275 RLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R + L  N++R  +    I+    D  +      FD ++VDAPCS  G  R+ P  +   
Sbjct: 132 RAKILAENVERFGIQNAVILNESPDRMEDRFANYFDVIVVDAPCSGEGMFRKDPAAMEYW 191

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELV 391
           + D   + A  QR++L   +  + P G +V+S C+   ++ E+++  +L +     +  V
Sbjct: 192 NKDYPSECANRQREILKSAMKMLAPKGTLVYSTCTFAPEEDEQIIAWLLDNYENLALVDV 251

Query: 392 PLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           P               +PE    +R+ P   +          G F   L 
Sbjct: 252 PKQDDMDAGRPEWADGNPELTKAVRLFPHHFQGE--------GHFMAKLV 293


>gi|283956050|ref|ZP_06373537.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792370|gb|EFC31152.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 292

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 27/304 (8%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208
              R+E  Y K+ +  I  +      + + V       E    +     L    I     
Sbjct: 1   MLSRIEKLYTKDEMQNILSSFTQEKNVCVFVNTLKISTEELEKEFLKQNLKFKKINAYCY 60

Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
                    + S+  F E  +++Q+ S+ +           SVLD+CAAPGGK+      
Sbjct: 61  LFDAKDKAILSSMKVFNEAYFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANF 120

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           + +   +   ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+
Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
              I    +    +   +I   A  Q+KLL   +  +K GG +++S C+  K+++EEV++
Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELIYSTCTFTKEENEEVIE 236

Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             L+    + +  + L +   K              RI P +           DGFF   
Sbjct: 237 NALKSEFKLELLDIDLENVEAKVGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287

Query: 438 LRRL 441
           LR+L
Sbjct: 288 LRKL 291


>gi|225574656|ref|ZP_03783266.1| hypothetical protein RUMHYD_02733 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038124|gb|EEG48370.1| hypothetical protein RUMHYD_02733 [Blautia hydrogenotrophica DSM
           10507]
          Length = 444

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 16/255 (6%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P +  G++++Q+ SA  P          +VLDLCAAPGGK  
Sbjct: 45  PWVPNGYFYPSEVRPSLHPYYRAGLYYLQEPSAMTPAACLPVTPGEAVLDLCAAPGGKAT 104

Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312
           +L         + A D+S  R   L  NL+        +     +       + F  +L+
Sbjct: 105 ELATKLAGQGILVANDISASRARALLRNLELFGASNIFVTNEIPEKMTRYFPEFFHKILL 164

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+   +      +     +  Q++L+L     + PGG++++S C+    +
Sbjct: 165 DAPCSGEGMFRKDDSLAADWSVEKSENLSKLQKELILTASKMLMPGGLLLYSTCTFAPAE 224

Query: 373 SEEVVQKVL-RSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSG 429
            EE++  +L + + + +  +P    +   +      +PE    +RI P  +         
Sbjct: 225 DEEIISFLLNQRNDMHLVSLPDYPGFSSGVPEWADQNPELAKCVRIWPHKM--------N 276

Query: 430 MDGFFAVALRRLIQP 444
            +G F   L++  +P
Sbjct: 277 GEGHFLALLKKEGEP 291


>gi|227536029|ref|ZP_03966078.1| tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244142|gb|EEI94157.1| tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 453

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 28/321 (8%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             +I+P     +L      +    I           + +     T A   +A  +P    
Sbjct: 1   MSNILPNSLIRKLGANPLFDEQAFIDIHEKGERQSSIRINEKKITAAPFAHAEPIPWCDR 60

Query: 204 RLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKT-- 256
                     +L P +  G ++ QDAS+     +          L  LDLCAAPGGKT  
Sbjct: 61  GFYLEERPSFTLDPLYHAGCYYSQDASSMFISHIIQHLKLDGEPLKALDLCAAPGGKTTL 120

Query: 257 -AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVDA 314
               +   + + A ++ K R+  L  N+ R       I   D          FD +L+DA
Sbjct: 121 LNSYLHPQSLLVANEIIKTRVPILMENMVRWGNSNVVITNNDPSAFKRLPGYFDLLLIDA 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS +G  R+    +      ++   +  Q+++L + +  +K  GI+++S CS  ++++E
Sbjct: 181 PCSGSGMFRKDSGAIDEWSEANVKLCSERQQRILAEAMDCLKTDGILLYSTCSYSQEENE 240

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           ++   +++   +    +P+   +      +   +  G+ R  P  ++          GFF
Sbjct: 241 DIADWLVKEYGLKSIQIPVGEEWGIEETQSDISACFGY-RFYPHKVKGE--------GFF 291

Query: 435 AVAL----------RRLIQPK 445
             A           R+ I+P+
Sbjct: 292 ITAFVKTEFQETFNRKKIKPE 312


>gi|254573536|ref|XP_002493877.1| S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase
           [Pichia pastoris GS115]
 gi|238033676|emb|CAY71698.1| S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase
           [Pichia pastoris GS115]
 gi|328354302|emb|CCA40699.1| hypothetical protein PP7435_Chr4-0535 [Pichia pastoris CBS 7435]
          Length = 711

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 98/264 (37%), Gaps = 43/264 (16%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDVSKR 274
              Q+A + IP  +     +  VLD+CAAPG KT+Q               V A D   +
Sbjct: 160 ISRQEAVSMIPPLVLDVKPHHYVLDMCAAPGSKTSQLVEALHAEDKEPSGFVMANDSDYK 219

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK---------LFDAVLVDAPCSSTGTIRRH 325
           R   L   + RL+     ++  DA  +   K          FD VL D PC+   T+R++
Sbjct: 220 RSHMLVHQVKRLNSANFIVVNHDAQMFPKMKLTPESQEYIKFDRVLCDVPCTGDATMRKN 279

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            +V       + +     Q  +L +GI  ++ GG +V+S CSL+  ++E VV   LR   
Sbjct: 280 INVWTNWTPGNAIGLHPLQLNILNRGIQLLQRGGRLVYSTCSLNPIENEAVVAAALRQWG 339

Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWIR----------ITP-----------DM 419
             + LV  +           I        +  +R          + P           D 
Sbjct: 340 DQIRLVDCSDRLPGLKRVPGISNWKVFGKDMELREKGADDIHATVFPPTEEEAKNFNLDR 399

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443
             ++        GFF     ++ +
Sbjct: 400 CIRVYPHLQNTGGFFITVFEKIDK 423


>gi|307131294|ref|YP_003883310.1| Ribosomal RNA small subunit methyltransferase F [Dickeya dadantii
           3937]
 gi|306528823|gb|ADM98753.1| Ribosomal RNA small subunit methyltransferase F [Dickeya dadantii
           3937]
          Length = 482

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +  +L AV     G  L    E    + +      G++++Q+AS+ +PV     G     
Sbjct: 61  YGWELEAVPWCDEGFWLLNADEEAMRLGNALEHLAGLFYIQEASSMLPVSALFMGDDAPE 120

Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD+ AAPG KT Q+     +   + A + S  R++ L  NL R  +    +   D   
Sbjct: 121 RVLDMAAAPGSKTTQIAARLNNQGLIVANEYSASRVKVLHANLHRCGVSNTALTHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ P  +     + I   A  QR+L+L     +KPG
Sbjct: 181 FGNALPETFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRELILSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++++S C+L+ Q+++ V + +++  P   E+  L   + ++     AL+ +G++ + P 
Sbjct: 241 GVLIYSTCTLNHQENQHVCRWLMQQFPDACEVESLKDLFPQA---HHALTEDGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDSE--------GFFVARLRKTA 313


>gi|227328622|ref|ZP_03832646.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 484

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 21/264 (7%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243
           +  +L  +     G  L    E    + +      G++++Q+AS+ +PV      N+   
Sbjct: 61  YGWQLEPIPWCQEGFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNDALE 120

Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +VLD+ AAPG KT Q+     +   + A + S  R++ L  N+ R  +    I   D   
Sbjct: 121 TVLDVAAAPGSKTTQIAARLNNEGAIIANEYSASRVKVLHANISRCGVSNTAITHFDGRV 180

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ P  +     + I   A  QR L++     +KPG
Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSQESITDIAATQRDLIMSAFHALKPG 240

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G++++S C+L++ ++++V   +    P   E   L+  +    D   A + EG++ + P 
Sbjct: 241 GVMIYSTCTLNRHENQQVCHWLQAQFPDACEFESLHDLF---TDAERATTEEGFLHVFPQ 297

Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442
           + +          GFF   LR+  
Sbjct: 298 IYDSE--------GFFVARLRKTA 313


>gi|90407006|ref|ZP_01215196.1| Sun/nucleolar protein family protein [Psychromonas sp. CNPT3]
 gi|90311877|gb|EAS39972.1| Sun/nucleolar protein family protein [Psychromonas sp. CNPT3]
          Length = 481

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 122/264 (46%), Gaps = 22/264 (8%)

Query: 191 HKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIP----VQLFGTLNNLS 244
            +L+++   T G  +    +   + +      G+ ++Q+AS+ +P       F T  + +
Sbjct: 61  WQLSSIPWCTEGFWIDAGEQLTPLGNSFEHLSGLCYLQEASSMLPVSALSHFFKTDEHST 120

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           +LD+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   +
Sbjct: 121 ILDMAAAPGSKTTQLAAQMNNQGLLIANEYSASRVKILHANMQRCGIKNVALTHFDGKIF 180

Query: 302 --CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               +  FDA+L+DAPCS  GT+R+    +       I   A  Q+ L+      +K  G
Sbjct: 181 GSWLENTFDAILLDAPCSGEGTVRKDKHAMKNWSQSSIESIALTQQALIESAFYALKEDG 240

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           I+V+S C+L  ++++++   +       VE + L+  +        A + EG++ + P +
Sbjct: 241 ILVYSTCTLSLEENQDICHALKERFTDCVEFLNLSDLF---KGADKAATTEGFLHVWPQI 297

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443
            +         +GFF  A+R++ +
Sbjct: 298 YD--------TEGFFVAAIRKVGK 313


>gi|332073709|gb|EGI84188.1| nop2p [Streptococcus pneumoniae GA17570]
          Length = 434

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----EKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|218132205|ref|ZP_03461009.1| hypothetical protein BACPEC_00062 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992898|gb|EEC58898.1| hypothetical protein BACPEC_00062 [Bacteroides pectinophilus ATCC
           43243]
          Length = 460

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 112/299 (37%), Gaps = 23/299 (7%)

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PTGGIRLKELPE 210
                 +   A  D+     Y  L V     T    L                      +
Sbjct: 11  MKDMLGDEFDAYLDSFNDSRYYGLRVNTLKITPEEFLRISPFELKPIPWIENGFYFSEND 70

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVT 267
                P +  G++++Q+ SA  P  +     + ++LD+CAAPGGK+ +    +     + 
Sbjct: 71  KPAKHPYYYAGLYYIQEPSAMTPANVLPVNEDDAILDMCAAPGGKSTELGAKLNHTGMLV 130

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325
             D+S  R + L  N++   +    ++  D           FD +++DAPCS  G  R+ 
Sbjct: 131 TNDISNSRAKALLKNIEVFGIPNVLVMSEDPKKLVSYYPEFFDKIMIDAPCSGEGMFRKD 190

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
             ++ + + +        Q+ +LL     +KPGGI+ +S C+  K + EE ++ +L   P
Sbjct: 191 NKLIKSWEKNGPEFYHEIQKGVLLAASKMLKPGGIMQYSTCTFSKLEDEESIRYILNECP 250

Query: 386 I----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 V+     S  ++       +     +RI P  +           G F   +++
Sbjct: 251 ELKLIDVKPYEGFSHGYEDDGQERDMQMSKTVRIWPHRMAGE--------GHFVALIKK 301


>gi|218506565|ref|ZP_03504443.1| probable RNA methyltransferase - sun protein [Rhizobium etli Brasil
           5]
          Length = 153

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 66/148 (44%), Positives = 97/148 (65%), Gaps = 3/148 (2%)

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
            +  D   + P + FDA+++DAPCSSTGT RRHPDVLWT+  +DI + A  Q +LL   +
Sbjct: 7   TVVADLTTFKPAEGFDAIVLDAPCSSTGTTRRHPDVLWTKGPEDIARLAALQERLLRHAL 66

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
           + +KP G +VFSNCSLD  + EEVV +VL  +   +E V +++  W  ++ A  ++P G 
Sbjct: 67  TLLKPLGTLVFSNCSLDPAEGEEVVARVLSDT-DAIERVAISAGDWPGLEAA--ITPLGE 123

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
            R  P ML+  +G++SG+DGF+A  LRR
Sbjct: 124 FRTLPTMLKMPEGIASGLDGFYAAVLRR 151


>gi|148985643|ref|ZP_01818797.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP3-BS71]
 gi|147922124|gb|EDK73246.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP3-BS71]
 gi|301800267|emb|CBW32887.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae OXC141]
          Length = 434

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       E       +          V    E      +A+     G   
Sbjct: 1   MKFPEGFVEK-YKEILGEEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKKPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L       +L+P+         + +  +     R+ P   +            F   L+
Sbjct: 236 LEEY--DFDLLPVEHINGMVAGIDLQETA----RMYPHQFKGEGQ--------FVAHLQ 280


>gi|327389588|gb|EGE87933.1| nop2p [Streptococcus pneumoniae GA04375]
          Length = 434

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|270010113|gb|EFA06561.1| hypothetical protein TcasGA2_TC009472 [Tribolium castaneum]
          Length = 614

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 114/318 (35%), Gaps = 57/318 (17%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           L    +   W  +L    +       K     I        G    Q+  + IP  L   
Sbjct: 111 LPWYPNKLAWQLELTRKDIRRCEAYYKLHNFLISETE---HGTISRQETVSMIPPLLLDV 167

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKV---------TALDVSKRRLEKLRCNLDRLHLYA 290
             +  VLD+CAAPG KTAQL+                A DV  +R   L     RL+   
Sbjct: 168 QPHHKVLDMCAAPGSKTAQLLEMLHSNDDPIPSGYVIANDVDNKRCYMLVHQAKRLNSPC 227

Query: 291 EDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
             +I  D+                +  FD VL D PCS  GT+R++PD+       + + 
Sbjct: 228 VAVINHDSAILPNLSASLPDGSMEQVQFDRVLCDVPCSGDGTLRKNPDIWMKWTPANGLN 287

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               Q ++L +G   +  GG +V+S CS++  ++E V+ ++L  +   ++LV ++S+   
Sbjct: 288 LHGIQSRILRRGAELLTVGGRLVYSTCSINPIENEAVIHRLLSETDGALQLVDVSSSLPG 347

Query: 400 SIDMAMALS-----------------PEGWI-RITPDMLE---------------KIDGV 426
              M    +                  E W   I P M                 +I   
Sbjct: 348 LKYMPGLENWLVGSRNLEFYSSYDEVDEKWQTTIRPQMFPPKSEDKHLYNLNRCMRILPH 407

Query: 427 SSGMDGFFAVALRRLIQP 444
                 FF   L +L +P
Sbjct: 408 HQNTGAFFVAVLEKL-KP 424


>gi|148993038|ref|ZP_01822632.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP9-BS68]
 gi|168489567|ref|ZP_02713766.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP195]
 gi|225857037|ref|YP_002738548.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae P1031]
 gi|147928239|gb|EDK79256.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183571889|gb|EDT92417.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP195]
 gi|225724613|gb|ACO20465.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae P1031]
 gi|301794442|emb|CBW36876.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae INV104]
          Length = 434

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|88857244|ref|ZP_01131887.1| tRNA and rRNA cytosine-C5-methylase [Pseudoalteromonas tunicata D2]
 gi|88820441|gb|EAR30253.1| tRNA and rRNA cytosine-C5-methylase [Pseudoalteromonas tunicata D2]
          Length = 409

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 150/439 (34%), Gaps = 53/439 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
                +L+ V + +  L       + +  +     +D  ++  I    +R L     +  
Sbjct: 16  EAVLTILNNVAQAQCPLDKAYAQHFFNFDYA---SQDHAVITQITGDMVRKLNLYSFITG 72

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +   +      L            +  + +   +   +E  +++ +N           
Sbjct: 73  NTITH-ITSNPAVLFYA---------WSKI-EQQTIPSFIELTQQEIDNVEQLIDTAKHN 121

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
           + +       L  +    +   W +ER  +         I    +    ++L    + E 
Sbjct: 122 QSLMDGCPAWLNTLGENELADSWPQER--SALALAAKRFIRANLLKTNTVELQKTLEKEH 179

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
              +L +               S+     F  G++  QD  + + ++       + V+D 
Sbjct: 180 ITTRLIS---DCVTALEITSNSSLFKSLAFKNGLFEQQDVGSQLIIEALDVKPGMRVIDA 236

Query: 249 CAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCP 303
           C+  GGKT   A  +    ++ A+D+ + +L  L+    R      +             
Sbjct: 237 CSGAGGKTLGLAAYMKGKGRLLAMDIEEHKLAALKQRAKRAGADNIETRLITSSKTIKRL 296

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC-FQRKLLLQGISFVKPGGIVV 362
           K+  D +L+D PCS  G ++R+PD  W  D  + + +    Q+ +L +    +K  GI+V
Sbjct: 297 KESADRLLLDVPCSGLGVLKRNPDAKWHSDMSESLPTLRHLQQDILTRYSKMLKVDGIMV 356

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS+   ++E  V   L+++P    +                                
Sbjct: 357 YATCSILPSENELQVSAFLKANPNYKLINET----------------------------T 388

Query: 423 IDGVSSGMDGFFAVALRRL 441
           I    SG DGF+  +L+R+
Sbjct: 389 ISPAQSGFDGFYFASLQRI 407


>gi|205373323|ref|ZP_03226127.1| hypothetical protein Bcoam_08355 [Bacillus coahuilensis m4-4]
          Length = 192

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 19/204 (9%)

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            +LD CAAPGGKT      + +   V ALD+ K ++  ++ N DRL L       +D+  
Sbjct: 1   MILDACAAPGGKTTHIAERLNNTGVVEALDLHKHKVALIKQNADRLQLTNVTTHTLDSRK 60

Query: 301 YCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 ++ FD +LVDAPCS  G +RR PD+ + ++  D+      Q ++L +    +K 
Sbjct: 61  ANELFKEECFDRILVDAPCSGLGVVRRKPDIKYAKNEKDLNSLQRIQLEILNRVAPLLKK 120

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GGI+V+S C++D+ +++  VQ+ L+         P +    ++  +      +  ++I P
Sbjct: 121 GGILVYSTCTVDQIENDGTVQQFLKEHHDF---EPAHLNTPEA--LQAFKQEDYKLQIFP 175

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                      G DGFF  + R+ 
Sbjct: 176 QDF--------GGDGFFISSFRKK 191


>gi|260901577|ref|ZP_05909972.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           parahaemolyticus AQ4037]
 gi|308108539|gb|EFO46079.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           parahaemolyticus AQ4037]
          Length = 478

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 124/263 (47%), Gaps = 20/263 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242
           +     L+ V     G  +   E    + +      G++++Q+AS+ +PV        + 
Sbjct: 57  DDKGWTLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 DAVLDTAAAPGSKTTQIAALMKNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GT+R+  D +       +++ A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLEIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+L  +++++V   +  +    VE   L+  +    +   AL+ EG++ I P
Sbjct: 237 GGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLDGLFE---NANAALTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            + +          GFF   +R+
Sbjct: 294 QVYDCE--------GFFVARIRK 308


>gi|14520839|ref|NP_126314.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus
           abyssi GE5]
 gi|74581685|sp|Q9V106|TRCM_PYRAB RecName: Full=tRNA (cytosine-5-)-methyltransferase
 gi|5458055|emb|CAB49545.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
          Length = 311

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 8/259 (3%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +E              G  +K    +   L  ++ G+   Q+AS+ IP  +     +  +
Sbjct: 55  LEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVI 114

Query: 246 LDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           LD+ AAPG K    AQ + +   + A D  + R   L  NL R  +    +   D   + 
Sbjct: 115 LDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFA 174

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             +  FD VL+DAPCSS G IR++     T     +   +  Q++L+L     +KPGG++
Sbjct: 175 RYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVL 234

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C++D  ++EEVV  +L+ +   +E V L     + +           +R       
Sbjct: 235 VYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVR----KTI 290

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +I    +  + F+   +R+
Sbjct: 291 RIHPQDNDTEAFYIAKIRK 309


>gi|330796031|ref|XP_003286073.1| hypothetical protein DICPUDRAFT_30335 [Dictyostelium purpureum]
 gi|325083981|gb|EGC37420.1| hypothetical protein DICPUDRAFT_30335 [Dictyostelium purpureum]
          Length = 717

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 105/284 (36%), Gaps = 60/284 (21%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------------------- 259
            +G    Q+A + IP       ++  +LD+CAAPG KT Q+                   
Sbjct: 160 QQGNITRQEAVSMIPPLFLDVQSHHRILDMCAAPGSKTTQILEDLHMKHNIEVNLDVEKP 219

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAV 310
              +    + A DV   R   L     RL   A  I   +A ++             D +
Sbjct: 220 SAYIPKGSIIANDVDTNRCYMLAHQTSRLGSPAIIITNHEAQNFPLLYDSNNEPMYLDRI 279

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT R++P+V    +    +     Q ++  +G   +K GG +V+S CS++ 
Sbjct: 280 LCDVPCSGDGTSRKNPEVWKKWNFSGGIGLHTLQLRIATRGCHLLKVGGRIVYSTCSMNP 339

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS-----PEG-------------- 411
            ++E V+  +L+ S   ++LV ++S Y   +      +      EG              
Sbjct: 340 VENEAVIAALLKRSEGSMKLVDVSSQYPDLVRSPGIYTWPVTDKEGTYANWDELDELKKN 399

Query: 412 --WIRITP-----------DMLEKIDGVSSGMDGFFAVALRRLI 442
             +  + P           +   ++        GFF   L ++ 
Sbjct: 400 KYFKTLWPSTEEEAKKMHLEYCMRVYPHQQNTGGFFIAVLEKVA 443


>gi|309809906|ref|ZP_07703754.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169694|gb|EFO71739.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 284

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 23/290 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNLALNNALEKSK---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  ++ + +Q ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPDEQDDVQYMSIKYSYPQWLVKYCLDNFGKAKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL      +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKR 274
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ ++
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEHLTTGKVFALDIHQK 283


>gi|51891972|ref|YP_074663.1| putative rRNA methylase [Symbiobacterium thermophilum IAM 14863]
 gi|51855661|dbj|BAD39819.1| putative rRNA methylase [Symbiobacterium thermophilum IAM 14863]
          Length = 492

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 112/273 (41%), Gaps = 24/273 (8%)

Query: 186 IETWAHK--LNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
            E  A +  L A  +P     L   P       P  A G+++ Q+ SA +   L G    
Sbjct: 57  REELAERMGLTAEPVPWNPDGLYCPPSLRPGWHPYHAAGLYYGQEPSAMVVAPLVGARPG 116

Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             VLDL AAPGGKT Q    + +   + A +V   R+  L  NL+RL +    ++     
Sbjct: 117 ERVLDLAAAPGGKTTQLAAQMENRGLLVANEVDPGRVRALVENLERLGITCAAVVSERPE 176

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
               +    FD VLVDAPCS  G  R+ P+V      D     A  Q ++L   +  ++P
Sbjct: 177 RLAERLPGFFDRVLVDAPCSGEGMFRKTPEVRDRWRPDMPEACARVQGEILNSAVELLRP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALSPEGWI-- 413
           GG +V+S C+   +++EEV+ ++L        + L P+        +     +    +  
Sbjct: 237 GGRLVYSTCTFAPEENEEVLLQLLTRRADLRMLPLPPVPGIAPGRPEWTRDPARAATVGV 296

Query: 414 ----RITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               R+ P  +           G F   L R+ 
Sbjct: 297 GLAGRLWPHRVRGE--------GHFVAVLERVA 321


>gi|297195546|ref|ZP_06912944.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152839|gb|EDY65275.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 291

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 17/202 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +  +     RD  L   +V  TLR     D
Sbjct: 20  PVRILAFEALRAVDERDAYANLVLPPLLKKAREKDDFDGRDAALATELVYGTLRRQGTYD 79

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V  +VE A+    +   AK V
Sbjct: 80  AIIAACIDRPLREVDPPVLDVLALGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 138

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR++S+  ++                 +A +   P W    L +  G  R     + 
Sbjct: 139 NAVLRKISQHDMDAWLERVAPPYDEDAEDHLAVVHSHPRWIVSALWDSLGGGRAGIEDLL 198

Query: 170 DACISPLYIDLTVKFDIETWAH 191
           +A      + L  +    T   
Sbjct: 199 EADNERPEVTLVARPGRSTTGE 220


>gi|148926623|ref|ZP_01810304.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845142|gb|EDK22237.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 232

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 18/235 (7%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
           + S+  F E  +++Q+ S+ +            VLD+CAAPGGK+      + +   +  
Sbjct: 10  LSSMKVFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLAC 69

Query: 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
            ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+   I    +
Sbjct: 70  NEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE 129

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPI 386
               +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++  L+    +
Sbjct: 130 ----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKL 185

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  + L +   K+             RI P +           DGFF   LR+L
Sbjct: 186 ELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAKLRKL 231


>gi|57236949|ref|YP_178750.1| NOL1/NOP2/sun family protein [Campylobacter jejuni RM1221]
 gi|57165753|gb|AAW34532.1| NOL1/NOP2/sun family protein [Campylobacter jejuni RM1221]
          Length = 279

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 18/235 (7%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
           + S+  F E  +++Q+ S+ +            VLD+CAAPGGK+      + +   +  
Sbjct: 57  LSSMKVFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLAC 116

Query: 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
            ++S+ R   L+ NL    + A   + +           FD +L+DAPCS+   I    +
Sbjct: 117 NEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE 176

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPI 386
               +   +I   A  Q+KLL   +  +K GG +V+S C+  K+++EEV++  L+    +
Sbjct: 177 ----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKL 232

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  + L +   K+             RI P +           DGFF   LR+L
Sbjct: 233 ELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAKLRKL 278


>gi|309775876|ref|ZP_07670870.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916414|gb|EFP62160.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 444

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 15/254 (5%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                 +      + +  + + +      G++++Q+ SAS  V++    +   VLD+CAA
Sbjct: 53  DCRPSAICPQSFYIPKDLKGLGNHVAHLAGLFYMQEPSASSAVEVLDVQSGDWVLDMCAA 112

Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306
           PGGK+ Q+         + + ++  +R   L  N++RL      I          +    
Sbjct: 113 PGGKSTQIAAKLKDSGFLVSNEIDSKRAGILLSNMERLGFSRCMITNTRPQQIAKEMGGW 172

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VLVDAPCS  G  ++H   +     + +      Q+ +L    + +K  GI+V+S C
Sbjct: 173 FDRVLVDAPCSGEGMFKKHSKAMEDWSEEHVKACGQRQQHILDSAYTALKKDGILVYSTC 232

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +   +++E+V+   L+S    +ELV    ++ +S      L  E   RI P         
Sbjct: 233 TYAMEENEQVIYAFLQSH-SDMELVDCGVSFGRSGLPYEKLEHEKLRRIFP--------- 282

Query: 427 SSGMDGFFAVALRR 440
               +G F   L++
Sbjct: 283 MDQGEGHFVAKLKK 296


>gi|149191346|ref|ZP_01869599.1| m5C methyltransferase [Vibrio shilonii AK1]
 gi|148834825|gb|EDL51809.1| m5C methyltransferase [Vibrio shilonii AK1]
          Length = 448

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 20/261 (7%)

Query: 191 HKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVL 246
            +L  +     G  +   E    + +      G++++Q+AS+ +P      G     +VL
Sbjct: 37  WELTTIPWCEEGFWIDADESTVPLGNTAEHMAGLFYIQEASSMLPPSALFCGDDKFEAVL 96

Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301
           D+ AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   DA  +  
Sbjct: 97  DMAAAPGSKTTQIAALMNNEGVLVANEFAASRVKVLHANIERCGVSNVAMSNYDARVFGG 156

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FDA+L+DAPCS  GT+R+  D +           A  Q+ L+      +K GG +
Sbjct: 157 WLPEQFDAILLDAPCSGEGTVRKDADAMKNWSLASTKDIAQTQKDLIESAFHALKVGGSL 216

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C+L  +++++V   + ++    VE+  L   +    D   A + EG++ + P   +
Sbjct: 217 VYSTCALSPEENQQVALHLTQTFGNAVEITSLQQLFP---DAEKATTQEGFLHVFPQTYD 273

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
                     GFF    ++  
Sbjct: 274 SE--------GFFIAKFKKTA 286


>gi|238916962|ref|YP_002930479.1| hypothetical protein EUBELI_01031 [Eubacterium eligens ATCC 27750]
 gi|238872322|gb|ACR72032.1| Hypothetical protein EUBELI_01031 [Eubacterium eligens ATCC 27750]
          Length = 442

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 14/249 (5%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                       +     P +  G++++Q+ SA  P  +        V D+CAAPGGK+ 
Sbjct: 48  PWIENGFYYSEDDKPAKHPYYFAGLYYIQEPSAMTPANVLPIDEGDVVFDMCAAPGGKST 107

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLV 312
           +    +     +   D+S  R + L  N++   +    ++  D      +    FD VL+
Sbjct: 108 ELAAKLNKTGLLITNDISNSRAKALLKNVEVFGVPNLCVLNEDPVGIASRFSGFFDKVLI 167

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+   ++   + +     +  QR ++L G   +KPGG +++S C+  K +
Sbjct: 168 DAPCSGEGMFRKDNKLIKAWEKNGPEFYSQIQRNIILAGADMLKPGGKLLYSTCTFSKLE 227

Query: 373 SEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
            E+ V  +L + P   +  +     +    D       E  +RI P  +           
Sbjct: 228 DEDSVIHLLTNRPDMHLIDIKPYEGFSHGFDTDEGYHLEKAVRIFPHKMPGE-------- 279

Query: 432 GFFAVALRR 440
           G F     +
Sbjct: 280 GHFVALFEK 288


>gi|14591725|ref|NP_143813.1| nucleolar protein [Pyrococcus horikoshii OT3]
 gi|3258435|dbj|BAA31118.1| 389aa long hypothetical nucleolar protein [Pyrococcus horikoshii
           OT3]
          Length = 389

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 23/235 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
           S+  L  F +G ++ Q   + +  ++     +  ++D+ AAPGGKT  +     +  ++ 
Sbjct: 171 SLSELKAFEKGYFYPQGLPSMVTARVLEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEII 230

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326
           A+D SK RL K+  N+ RL +    +++MDA          D +L+DAPC++ G     P
Sbjct: 231 AIDKSKNRLRKMEENIKRLGVKNVKLVQMDARKLPDLGIKADKILLDAPCTALGV---RP 287

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   R    I  +A +QR  +   I  ++ GG++V+S C+L  +++E  V K +    +
Sbjct: 288 KLWEERTLKHIEATARYQRAFIWAAIKSLRRGGVLVYSTCTLSYEENEGNV-KFMIRKGM 346

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +E   +             +      R  P              GFF   LR++
Sbjct: 347 KLEEQSIFIGSP-------GIGMNKVQRFYPH--------KHLTQGFFIAKLRKV 386


>gi|295109450|emb|CBL23403.1| NOL1/NOP2/sun family putative RNA methylase [Ruminococcus obeum
           A2-162]
          Length = 469

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 102/252 (40%), Gaps = 18/252 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                             P +  G++++Q+ SA  P          ++LDLCAAPGGK  
Sbjct: 65  PWIPNGYFYPGDVRPSFCPLYQAGLYYLQEPSAMTPASCLPVTPGENILDLCAAPGGKAT 124

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLV 312
               ++     + A D+S  R   L  N++   +    +             + F  +L+
Sbjct: 125 ALGAMLNGSGLLVANDISSSRTRALLRNIELFGIANAFVTNETPAHLKNRFPEFFHKILL 184

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+   +      +   + +  Q++L+LQ    ++PGG +++S C+   ++
Sbjct: 185 DAPCSGEGMFRKEDALARDWTPEKSEELSVLQKELILQAADMLRPGGQLLYSTCTFAPKE 244

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG----WIRITPDMLEKIDGVSS 428
            E VV  +L + P  ++L+ L +    +  +    + +      + + P  ++       
Sbjct: 245 DEGVVSYLLENRP-DMKLIELPAYEGFTPGVPAWGNGDPALSRCVHLFPHKMQGE----- 298

Query: 429 GMDGFFAVALRR 440
              G F   LR+
Sbjct: 299 ---GHFMALLRK 307


>gi|262275788|ref|ZP_06053597.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae
           CIP 101886]
 gi|262219596|gb|EEY70912.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae
           CIP 101886]
          Length = 476

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 191 HKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL--SV 245
            KL+ V     G  L +  E    + +      G++++Q+AS+ +PV            V
Sbjct: 61  WKLSPVPWCDTGFWLDDYDEDTVPLGNTAEHMAGLFYIQEASSMLPVTALLQNTTELEYV 120

Query: 246 LDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           LD+ AAPG KT Q+     +   + A + S  R++ L  NL R  +    +   D   + 
Sbjct: 121 LDMAAAPGSKTTQIAAALNNNGVLVANEYSASRVKVLHANLLRCGVLNTALTNYDGRVFG 180

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               ++FDAVL+DAPCS  GTIR+  D       + + + A  QR L+      +KPGG+
Sbjct: 181 GWLPEMFDAVLLDAPCSGEGTIRKDADAFSNWSLESVQEIAQTQRDLITSAFHALKPGGV 240

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L+  +++ +   +  +    VE  PLN+ +        A + EG++ + P + 
Sbjct: 241 MVYSTCTLNHDENQHICHYIKETFGDAVEFEPLNNLFE---GAEAACTDEGFLHVFPQIF 297

Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
           +          GFF   LR+  
Sbjct: 298 DSE--------GFFVAKLRKTA 311


>gi|145353308|ref|XP_001420960.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357455|ref|XP_001422934.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581196|gb|ABO99253.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583178|gb|ABP01293.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 700

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 99/277 (35%), Gaps = 64/277 (23%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV------------TALD 270
              Q+A + IP        +  +LD+CA+PG KT Q++                   A D
Sbjct: 137 ISRQEAVSMIPPFFLDAQPHHRILDMCASPGSKTFQILERMHGDFDGNTKLPTGIVVAND 196

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIR 323
           V  +R   L     R +     +   +A +Y            FDA+L D PCS   T+R
Sbjct: 197 VDLKRCNLLTHQTKRANSPTLLVTNHEAQNYPIIKGPKGELFDFDAILCDVPCSGDATMR 256

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + PD+       +       Q ++  +G   +K GG +V+S CSL+  ++E VV  +L+ 
Sbjct: 257 KAPDIWNRWTPGNGNGLHTLQLRIAARGAQLLKVGGRLVYSTCSLNPIENEAVVAALLKE 316

Query: 384 SPIPVELVPLNSAYWK------------------------------------SIDMAMAL 407
               +EL+ ++                                         S +    L
Sbjct: 317 CDGALELLDVSDELPDLKRSPGLRDWQVWDKFGYHPSFRGEEQMFKLCETMFSDEETKKL 376

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
             E  +R+ P   +          GFF    +++ +P
Sbjct: 377 PLERCLRLLPHHQD--------TGGFFVAVFQKV-KP 404


>gi|332535364|ref|ZP_08411157.1| ribosomal RNA small subunit methyltransferase F [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035192|gb|EGI71701.1| ribosomal RNA small subunit methyltransferase F [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 483

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 22/259 (8%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ------LFGTLNNLSVL 246
             +          +E   ++ +      G  +VQ+AS+ +P         F    N +VL
Sbjct: 68  WCSEGFWLERPSDEEQNLALGNTDLHLSGAMYVQEASSMLPPIALKQSIEFADSQNNTVL 127

Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDY 301
           D+ +APG KT+QL   + +   + A ++S  RL+ L   L R+ +    +   D   F  
Sbjct: 128 DIASAPGSKTSQLAALMDNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGN 187

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FD++L+DAPCS  GT+R+  D L     +  ++ A  Q+ L+      +KPGG +
Sbjct: 188 YMFECFDSILLDAPCSGEGTVRKDADALKNWSIESNIQIAQVQKDLIKSAFYALKPGGTL 247

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C+L   ++++V   +L      +    L+  +      + A + EG++ + P   +
Sbjct: 248 VYSTCTLTPLENQQVCDYLLSEFGDFIAPESLSDLFE---GASKATTSEGYLHVWPQTFD 304

Query: 422 KIDGVSSGMDGFFAVALRR 440
                     GFF    ++
Sbjct: 305 SE--------GFFIAKFKK 315


>gi|443992|emb|CAA54370.1| fmv [Escherichia coli K-12]
          Length = 191

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 27/213 (12%)

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
           +      N   +LDLCAAPGGKT     +   A+V A+D+ ++RL ++  NL RL + A 
Sbjct: 1   MTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKAT 60

Query: 292 DIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            + + D      +C ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L
Sbjct: 61  -VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEIL 119

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +K GG +V++ CS+  +++   ++  L+ +                 ++    +
Sbjct: 120 DAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCETGT 165

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           PE          ++    +   DGFF   L + 
Sbjct: 166 PE-------QPGKQNLPGAEEGDGFFYAKLIKK 191


>gi|134301049|ref|YP_001114545.1| Fmu (Sun) domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134053749|gb|ABO51720.1| Fmu (Sun) domain protein [Desulfotomaculum reducens MI-1]
          Length = 470

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 33/258 (12%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E  +     +     G    E        P +  G++++Q+ SA +P +L G      VL
Sbjct: 54  ELLSFLEEPIAWSKDGFYYNEATTRPAKHPYYYAGLYYIQEPSAMLPAELLGAQPGERVL 113

Query: 247 DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           DLCAAPGGK+ QL         +   D+  +R   L  N++R  +    ++         
Sbjct: 114 DLCAAPGGKSLQLAAHLGRKGLLVTNDLHPQRARVLLKNIERYGVANAIVLNETPSHLAK 173

Query: 304 KK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD +LVDAPCS  G  R+ PD+      +++ K A +Q+++L    S ++PGG V
Sbjct: 174 VFAGFFDRILVDAPCSGEGMFRKEPDMAKEWSPEEVNKYARWQQEILEAVPSLLRPGGEV 233

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C+   +++E+ +Q  +   P   ELV L                    R+ P  ++
Sbjct: 234 VYSTCTFSPEENEQQMQSFVAKYP-DFELVELR-------------------RLWPHQVK 273

Query: 422 KIDGVSSGMDGFFAVALR 439
                     G F   L+
Sbjct: 274 GE--------GHFVAKLK 283


>gi|297293960|ref|XP_002804365.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like [Macaca
           mulatta]
          Length = 736

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 97/262 (37%), Gaps = 48/262 (18%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGW------------IRITPDMLEKIDGVSSGM 430
            S   +EL  ++      +     ++   +            +RI P             
Sbjct: 338 KSEGALELADVSD-ELPGLKWMPGITQWKFRSVNFIYVYIFSLRILPHHQ--------NT 388

Query: 431 DGFFAVALRRLI-------QPK 445
            GFF   L +         QPK
Sbjct: 389 GGFFVAVLVKKSSMPWNKRQPK 410


>gi|82539126|ref|XP_723976.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478457|gb|EAA15541.1| RNA methyltransferase, putative [Plasmodium yoelii yoelii]
          Length = 376

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 138/432 (31%), Gaps = 89/432 (20%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
             L   + L +  +    +  RD+  +   V   ++    +  +                
Sbjct: 20  SPLDIYMRLYFKSN---NIKNRDKPYISEHVYNIIKNKTLLAYL---------------- 60

Query: 83  QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142
                              + V L     K    +  +   +N+                
Sbjct: 61  ------------------SSPVSLYTNIIKTYFSSDKWKYEMNNE-----------KIPA 91

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLP 199
                 P+   ++L N YG+++ + +         I L V  +          L +  + 
Sbjct: 92  HVRYSFPKELYDQLVNCYGEKKSITLMSILNEKAPIFLRVNTNKISRNDLYKNLMSKGIS 151

Query: 200 TGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                      L    + + ++  + +G + +QD ++ I            VLD CA  G
Sbjct: 152 VEKCVNSPSGLLLTKNQILKNIHEYKKGYFEIQDEASQIVSSKIPVKPGDKVLDYCAGSG 211

Query: 254 GK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309
           GK    +  + +  K+   D+  R L + +  L R  +    ++  +           D 
Sbjct: 212 GKTLAFSGSMENTGKIYLHDIRDRMLSQAKIRLRRAGIQNYILLNSNHILLKKLFGYMDI 271

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           V+VDAPC+ TG +RR+P++ +    + + +    QRK+  + + ++K  G +V+  CS+ 
Sbjct: 272 VVVDAPCTGTGALRRNPEMKYKFTNEKLYEYMNLQRKIFEKALFYLKKNGKIVYITCSIL 331

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++    +   +   + +   P +S                               S  
Sbjct: 332 DAENVHQAKYFCQKHNLYLSEPPFHS----------------------------LPQSKS 363

Query: 430 MDGFFAVALRRL 441
           MDGFF     R 
Sbjct: 364 MDGFFLAIFERK 375


>gi|209559511|ref|YP_002285983.1| Putative nucleolar protein [Streptococcus pyogenes NZ131]
 gi|209540712|gb|ACI61288.1| Putative nucleolar protein [Streptococcus pyogenes NZ131]
          Length = 436

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 111/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R  +    +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGVRNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   ++ +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALAMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|197124616|ref|YP_002136567.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. K]
 gi|196174465|gb|ACG75438.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. K]
          Length = 410

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 145/438 (33%), Gaps = 61/438 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           L+ V+        ++       A   L    ++ V   +     +  R+ A L   L   
Sbjct: 20  LAEVLAGGA-AERVVTRALR--ARPALDAPGRVAVAEAIFGVGLWRRRLRAQLGDPLAPP 76

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
                  L+ L                                   A+ +  +       
Sbjct: 77  ALLLAALLRDL----------------------------GGREAAVAEALAGVPAGALPP 108

Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHK 192
                   A    +P W    L+   G E     +  C+          ++ +    A +
Sbjct: 109 PRPPPAAPADRFSLPGWLDAELDAAAGPEADALAAALCLPGPVALRANRLRIEPAALAAR 168

Query: 193 LNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           L A  + T    L            ++  L  + EG+  VQD  + +  +  G     +V
Sbjct: 169 LGAEGVRTRPGALARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQLLGEALGARAGEAV 228

Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD CA  GGKT   A  +    +V A+D    RL +LR             +        
Sbjct: 229 LDACAGAGGKTLLLAAAVGPSGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHG--AAAP 286

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            +   D  LVDAPCS  G +RR PD+ W  +          Q ++L +  + V+PGG +V
Sbjct: 287 AELRVDRALVDAPCSELGALRRGPDLRWRLEPAAFEGLPALQARILERAAAHVRPGGRLV 346

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ C+  + + E+V +    + P  V + P           A  L+ +G++R  P     
Sbjct: 347 YATCTFRRAEDEDVAEAFETAHPEFVRVAPDAP--------ASTLTKDGFLRTWPH---- 394

Query: 423 IDGVSSGMDGFFAVALRR 440
                 G D FFA A  R
Sbjct: 395 ----RDGTDAFFAAAWVR 408


>gi|188582359|ref|YP_001925804.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001]
 gi|179345857|gb|ACB81269.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001]
          Length = 367

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 17/239 (7%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267
           ++   P F EG + +QD  + I   L G     +++DLCA  GGK    A +  + A++ 
Sbjct: 137 ALHVDPLFLEGGFEIQDEGSQIASLLAGARPGETIVDLCAGGGGKSLALAAITGNAARLI 196

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTI 322
           A D   RRL  +   L R     E                     D VLVDAPC+ TGT 
Sbjct: 197 ATDADPRRLAPIHERLRRSGAQVEVRTPRTGKARSDVLADLDGTVDRVLVDAPCTGTGTW 256

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           RR+PD  W      +      Q ++L +    ++PGG +V+  CSL  ++++  V  +L+
Sbjct: 257 RRNPDAKWRLRPGSLSGRIAEQAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVDGLLQ 316

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            S   +     + A    +   +  +  G          ++    +G DGF+   + R 
Sbjct: 317 RSGGTIGAAATDPAPVPGLSERVRRTARG---------IQMSPALTGTDGFYVATMTRK 366


>gi|251796177|ref|YP_003010908.1| Fmu (Sun) domain protein [Paenibacillus sp. JDR-2]
 gi|247543803|gb|ACT00822.1| Fmu (Sun) domain protein [Paenibacillus sp. JDR-2]
          Length = 464

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 115/315 (36%), Gaps = 44/315 (13%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---------DIETWAHKLNAVM 197
            +PE +  +++   G+E      D+        L             +      +   + 
Sbjct: 5   QLPEAYIRQMQALLGREEAERFLDSYSEARAYGLRFNPLKCRQPIGDNAAAALKQPFHLE 64

Query: 198 L--PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
                      E        P    G++++Q+ SA    +L G     ++LD  AAPGGK
Sbjct: 65  PVPWCNTGYYYEEAARPGKHPYHTAGLYYIQEPSAMSAAELLGAEPGETILDFAAAPGGK 124

Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAV 310
           T Q+   +     + A ++   R + L  N++RL +    +      +   +    FD +
Sbjct: 125 TTQIAGSMNGEGLLIANEIHPARAKILSENVERLGIRNAVVTNAAPHELSRRFPAFFDRI 184

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           ++D+PCS  G  R+  D +       +   A    ++L      +KPGG++V+S C+ ++
Sbjct: 185 MLDSPCSGEGMFRKDEDAVAEWSEAHVTYCAERSSEILEHAAIMLKPGGVLVYSTCTFNR 244

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++E+ +++ +   P                        E   R+ P  +          
Sbjct: 245 AENEDTIERFVAGHPSFQV--------------------EQIERLWPHQVRGE------- 277

Query: 431 DGFFAVALRRLIQPK 445
            G F   LR+  + +
Sbjct: 278 -GHFVARLRKASESE 291


>gi|332203232|gb|EGJ17300.1| nop2p [Streptococcus pneumoniae GA47901]
          Length = 434

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 113/300 (37%), Gaps = 26/300 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+        L
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAI-----TQTL 54

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-- 262
                 +    P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL     
Sbjct: 55  WGHYGKVSGKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLA 114

Query: 263 -GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
               + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  
Sbjct: 115 GEGLLISNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  
Sbjct: 175 GMFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 235 LLEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|225860818|ref|YP_002742327.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229571|ref|ZP_06963252.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255457|ref|ZP_06979043.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502647|ref|YP_003724587.1| tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|225727354|gb|ACO23205.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238242|gb|ADI69373.1| tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 434

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   +    QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCVSLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|308810697|ref|XP_003082657.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri]
 gi|116061126|emb|CAL56514.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri]
          Length = 734

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 110/327 (33%), Gaps = 66/327 (20%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +    P    L    +    A + +          + +     +       G    Q+A 
Sbjct: 119 ENHEIPPPKPLAWYPER--LAWQCSYTRTQLRSKPILQGIFDFIKTAN-EIGSISRQEAV 175

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA------------KVTALDVSKRRLE 277
           + IP        +  VLD+CA+PG KT Q++                 V A DV  +R  
Sbjct: 176 SMIPPFFLDVQPHHRVLDMCASPGSKTFQILERMHGDFEGNAKLPTGFVVANDVDLKRCN 235

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
            L     R +     +   +A +Y            FDA+L D PC+   T+R+ PD+  
Sbjct: 236 LLTHQTKRANSPTLLVTNHEAQNYPVIKGPKGEVFDFDAILCDVPCTGDATMRKSPDIWT 295

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                +       Q K+ ++G   VK GG +V+S CSL+  ++E VV  +L+     +EL
Sbjct: 296 RWTPGNGNGLHSLQLKIAMRGAQLVKVGGRLVYSTCSLNPIENEAVVAALLKECKGALEL 355

Query: 391 VPLNSAYWK------------------------------------SIDMAMALSPEGWIR 414
           + ++                                         S +    L  E  +R
Sbjct: 356 LDVSKELPDLKRSPGIHDWQVWDKFGYHPSFDGGEEMYKLSRTMFSDEETKKLPLERCLR 415

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + P   +          GFF    +++
Sbjct: 416 LLPHHQD--------TGGFFVAVFQKV 434


>gi|310815768|ref|YP_003963732.1| NOL1/NOP2/sun family protein [Ketogulonicigenium vulgare Y25]
 gi|308754503|gb|ADO42432.1| NOL1/NOP2/sun family protein [Ketogulonicigenium vulgare Y25]
          Length = 390

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 124/399 (31%), Gaps = 44/399 (11%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           L  ++         L      + +      D+  VR  V   LR       +   +    
Sbjct: 14  LDQIIA-GEPAERALISWARANRYAG--SGDRAAVRDRVFDALRRRDEYAHLGHALSGRG 70

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
           L      +   LR +                  +E           A    ++       
Sbjct: 71  L------MIGALRAAA---------------EDLEAI-----FSGAAYAPPALTEAERAA 104

Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAH 191
              L         +P             ++      A      + L V       E    
Sbjct: 105 PAPLPDDGPARWNLPAPLIAAF-RASLGDQADRAMAALSQRADVHLRVNTRKGGREKAQA 163

Query: 192 KLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
            L A  + T           + +    + +   + +G+  +QDA++   +      + + 
Sbjct: 164 ALAAEEIETRPHNSVETALIVTKNARKVQNAQAYLQGLVELQDAASQAAILRLPLSDGMR 223

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           VLD CA  GGK+  +        A  D +  R+  L     R  L    I   D     P
Sbjct: 224 VLDYCAGGGGKSLAMGARARLDIAAHDAAPARMADLPARAARAGLKIRQIGPADVARSGP 283

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              +D VL+DAPCS +GT RR PD  W  +  D+      Q ++L +    V  GG++ +
Sbjct: 284 ---YDLVLIDAPCSGSGTWRRTPDAKWRFEDKDLQALVRVQSEILPKAARLVTAGGVLAY 340

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
           + CS+ + ++++ +     + P   +   +        D
Sbjct: 341 ATCSVLQGENDDQIAAFCAAHPQWQQTDRMQLLPGPDWD 379


>gi|289449902|ref|YP_003475108.1| putative ribosomal RNA small subunit methyltransferase F
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184449|gb|ADC90874.1| putative ribosomal RNA small subunit methyltransferase F
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 573

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 21/240 (8%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
                + +G +++Q+ASA +P  L      ++VLDLCAAPGGKT +    + +   + A 
Sbjct: 84  AQTVEYLQGYFYLQEASAMLPAALLQAKPGMAVLDLCAAPGGKTTKLAADMNNQGLLLAN 143

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +++  R + L  NL++       +   D   F+  P  +FD +L D PCS  G   R P 
Sbjct: 144 EINLERAKVLLRNLEQWGAKNVVLTNADAAQFNRDPGFIFDKILADVPCSGEGMFGRDPG 203

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            +              Q  +LL+    + P G +++S C+ + +++E ++ + LR  P  
Sbjct: 204 AVAAWTQYQGRSLTDLQLNILLKAADLLAPKGEILYSTCTFNPEENEGIIWRFLREKP-E 262

Query: 388 VELVPLNSAYWK-------SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             L PL     K        ++          +R+ P +            G F   L +
Sbjct: 263 FSLAPLRDRLPKPCPELSGGVNYNSDQPWANCLRVWPHLARGE--------GHFCALLVK 314


>gi|240103559|ref|YP_002959868.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
 gi|239911113|gb|ACS34004.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
          Length = 312

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 19/256 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK- 255
            +P          +++  +P    G+ + Q+AS+ IP  +        VLD+ AAPG K 
Sbjct: 63  PIPWVREGFFIDVDNLAKVPEHGLGLIFGQEASSMIPPVVLEPRPGELVLDMAAAPGSKT 122

Query: 256 --TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLV 312
              AQ + +   + A D ++ R   L  NL+R+ +    +   D   +   +  FD VL+
Sbjct: 123 GQIAQYMENDGCIIANDPNRDRANVLIANLNRMGVLIARVTTRDGAKFARFENTFDRVLL 182

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCSS G IR+    L       +VK    Q++L+L G   +KPGG++V+S C++D  +
Sbjct: 183 DAPCSSVGMIRKSWRFLREWREKAVVKYMNIQKRLILAGYKALKPGGVMVYSTCTIDPLE 242

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS----PEGWIRITPDMLEKIDGVSS 428
           +EEVV  +LR +   +E + L     + +      +     +  +RI P+         +
Sbjct: 243 NEEVVDYLLRKTDARLERIKLPVKTSEPVLEWEGKTYSDELKKALRIHPND--------N 294

Query: 429 GMDGFFAVALRRLIQP 444
             + FF     ++++P
Sbjct: 295 DTEAFFIA---KIVKP 307


>gi|322376224|ref|ZP_08050717.1| NOL1/NOP2/sun family protein [Streptococcus sp. M334]
 gi|321282031|gb|EFX59038.1| NOL1/NOP2/sun family protein [Streptococcus sp. M334]
          Length = 434

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      + +     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEAPVSFSDPIPQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGTTNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+++ +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIIKWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280


>gi|3288668|dbj|BAA31226.1| Fmu [Vibrio alginolyticus]
          Length = 211

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 11/216 (5%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R  ++++L  V+ K  SL+  L      +A + +  RD  L++ I    LR+LPR++
Sbjct: 1   MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            + + ++   L  K+     L+ V + Q+ ++ +  +A V   VE  K  K  R    L+
Sbjct: 56  MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114

Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179
           N++LR   R + EL Q      AG    P W  + L+  Y  +   +  ++   +P+++ 
Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215
           +  +        +L                  I   
Sbjct: 175 VNHQHHTRDEYLELLKNENIDSTPHRSNGRHKIGRT 210


>gi|150004504|ref|YP_001299248.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides vulgatus ATCC
           8482]
 gi|149932928|gb|ABR39626.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides vulgatus ATCC
           8482]
          Length = 475

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 127/302 (42%), Gaps = 19/302 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F+ R   + G+E   A+  A  +   + + V  +   W+ ++    +      +
Sbjct: 1   MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVAGEPVLWASAGV 58

Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260
                S     P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+      
Sbjct: 59  YLSQRSTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHARSV 118

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318
              G+ + A +V + R + L  NL +       +   D        ++FD VL D PCS 
Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNAEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +    TD++      QR++L      +KPGG++++S C+ ++++ EE V 
Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEENVA 238

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +          VP+ S +    ++A    P    R  P  ++          GFF   L
Sbjct: 239 WIADELGAEKLKVPVASEWGIIGNLAGQDFP--VYRFLPHRVKGE--------GFFLAVL 288

Query: 439 RR 440
           R+
Sbjct: 289 RK 290


>gi|239623800|ref|ZP_04666831.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521831|gb|EEQ61697.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 465

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 18/273 (6%)

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
            P  +   V +++E      N      G     E        P +  G++++Q+ SA  P
Sbjct: 46  EPSRLRAMVPWNLEPVPWTENG--FYYGSEAGTEGGPRPSKHPAYYCGLYYLQEPSAMTP 103

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             +        VLDLCAAPGGK+ +    +     + + D+S  R   L  NL+   +  
Sbjct: 104 AAMLPVKPGDRVLDLCAAPGGKSTELGARLKGRGMLVSNDISYSRARALLKNLELAGVPN 163

Query: 291 EDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
             +     +       + FD +LVDAPCS  G  RR  D++    ++     A  QR++L
Sbjct: 164 ICVTSESPEKLAEAWPEFFDKILVDAPCSGEGMFRRDEDMVKDWASNGPSYYAPIQRQIL 223

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            Q +  +KPGG++++S C+  + + E  ++ VL   P  +EL  L+ +        + L 
Sbjct: 224 GQAVRMLKPGGMLLYSTCTFSRTEDEGNIEYVLEHYP-QMELCMLDLSAVPGAVDGIGL- 281

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +G +R+ P  L+          G F   LR+ 
Sbjct: 282 -KGCLRLFPHRLKGE--------GHFLALLRKK 305


>gi|255011152|ref|ZP_05283278.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis 3_1_12]
 gi|313148962|ref|ZP_07811155.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis 3_1_12]
 gi|313137729|gb|EFR55089.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis 3_1_12]
          Length = 472

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 114/304 (37%), Gaps = 19/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E      G E    +S A      + + +           +           
Sbjct: 1   MKLPISFIESTRALMGDEEYQKLSVALEQEPPVSVRLNSKFTDSLSCSSISGCIPWAAGG 60

Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260
             L + +     P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+     
Sbjct: 61  YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTAPVKMLDLCAAPGGKSTHARS 120

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
               G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS
Sbjct: 121 LLPDGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPSDFSRIGSFFDVILADVPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE +
Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240

Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
             +        E +PL     W      +  +     R  P   +          GFF  
Sbjct: 241 AWI--RQEFGAEPLPLTVPEEWNITGGLLVGADAPVYRFLPHKTQGE--------GFFLA 290

Query: 437 ALRR 440
            LR+
Sbjct: 291 VLRK 294


>gi|306827278|ref|ZP_07460565.1| NOL1/NOP2/sun family protein [Streptococcus pyogenes ATCC 10782]
 gi|304430425|gb|EFM33447.1| NOL1/NOP2/sun family protein [Streptococcus pyogenes ATCC 10782]
          Length = 436

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKESRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   ++ +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALAMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|307705076|ref|ZP_07641957.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK597]
 gi|307621375|gb|EFO00431.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK597]
          Length = 434

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      + +     G   
Sbjct: 1   MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEAPVSFPDTIPQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAQGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280


>gi|261252942|ref|ZP_05945515.1| ribosomal RNA small subunit methyltransferase F [Vibrio orientalis
           CIP 102891]
 gi|260936333|gb|EEX92322.1| ribosomal RNA small subunit methyltransferase F [Vibrio orientalis
           CIP 102891]
          Length = 474

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 21/260 (8%)

Query: 191 HKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL-- 246
            +L  V     G  +   E    + +      G++++Q+AS+ +PV              
Sbjct: 61  WQLEPVPWCEEGFWIEADESQVPLGNTAEHMSGLFYIQEASSMMPVAALFDNQGDDFTSV 120

Query: 247 -DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            D+ AAPG KT Q    + +   + A + S  R++ L  N++R  +    +   D   + 
Sbjct: 121 LDMAAAPGSKTTQIAAKMENAGVLVANEFSASRVKVLHANIERCGVRNTALSNYDGRVFG 180

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + F+AVL+DAPCS  GT+R+  D +   + + ++  A  Q+ L+      +KP G+
Sbjct: 181 GWLPEQFNAVLIDAPCSGEGTVRKDADAMKNWNKESVLSIAETQKDLIESAFHALKPNGV 240

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L  +++++V   +  +    VE   L   +        +L+ EG++ I P + 
Sbjct: 241 MVYSTCTLSVEENQQVCLHLKETFGDLVEFESLADLF---TGAEKSLTEEGFLHIFPQVY 297

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           +          GFF   +R+
Sbjct: 298 DCE--------GFFVAKIRK 309


>gi|172087696|ref|YP_204657.3| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri
           ES114]
 gi|59479982|gb|AAW85769.1| predicted methyltransferase [Vibrio fischeri ES114]
          Length = 455

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 117/264 (44%), Gaps = 21/264 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLF--GTLN 241
                 L  V     G  +         + S      G++++Q+AS+ +PV        +
Sbjct: 39  AEKQWDLEPVPWCDTGFWITRPESDTVKLGSTAEHMAGLFYIQEASSMMPVTALLKDNDD 98

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
               LD+ +APG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 99  IEMALDMASAPGSKTTQLAAGMKNQGALVANEFSSSRVKVLCSNIQRCGVSNVALTHFDG 158

Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +     + FD++L+DAPCS  GTIR+ PD +     + +++    QR L+      +K
Sbjct: 159 RVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALK 218

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG++V+S C+L+ ++++ +   ++      V   PL   +  +     AL+ EG++ I 
Sbjct: 219 LGGVMVYSTCTLNHEENQNICHHLVEQFGDAVTFEPLGDLFESA---EKALTKEGFLHIY 275

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P + +          GFF   +R+
Sbjct: 276 PQIFDSE--------GFFVAKIRK 291


>gi|168486097|ref|ZP_02710605.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1087-00]
 gi|183570809|gb|EDT91337.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1087-00]
          Length = 434

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|149019358|ref|ZP_01834720.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP23-BS72]
 gi|147931228|gb|EDK82207.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP23-BS72]
          Length = 434

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|148989524|ref|ZP_01820883.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP6-BS73]
 gi|149007328|ref|ZP_01830986.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP18-BS74]
 gi|307127029|ref|YP_003879060.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 670-6B]
 gi|147761132|gb|EDK68100.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147925067|gb|EDK76148.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP6-BS73]
 gi|306484091|gb|ADM90960.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 670-6B]
 gi|332074725|gb|EGI85199.1| nop2p [Streptococcus pneumoniae GA17545]
          Length = 434

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|15901256|ref|NP_345860.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae TIGR4]
 gi|111658595|ref|ZP_01409252.1| hypothetical protein SpneT_02000270 [Streptococcus pneumoniae
           TIGR4]
 gi|14972890|gb|AAK75500.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae TIGR4]
          Length = 434

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|297491229|ref|XP_002698734.1| PREDICTED: NOL1/NOP2/Sun domain family, member 5-like [Bos taurus]
 gi|296472402|gb|DAA14517.1| NOL1/NOP2/Sun domain family, member 5-like [Bos taurus]
          Length = 368

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 23/251 (9%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L        V+D CAAPG KT+ L     
Sbjct: 96  VFPAQTDLHDHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLK 155

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCS 317
           +  K+ A D   +RL  +   L R  +   ++ E D     P          +L+D  CS
Sbjct: 156 NQGKIFAFDQDAKRLASMATLLARAGVSCCELAEQDFLAVSPSDQRYCQVQYILLDPSCS 215

Query: 318 STGTIRRHPDVLWTRDT--DDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373
            +G   R  +   +     + +   A FQ++ L   ++F  ++    +V+S CS+ ++++
Sbjct: 216 GSGMPSRQLEEPKSCTPSPERLRALAAFQQRALSHALTFPALR---RLVYSTCSVCQEEN 272

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E+VV+  L+ SP    L P+  + W    ++     E  +R +P+             GF
Sbjct: 273 EDVVRAALQQSPGAFRLAPVLPS-WPHRGLSAFPGAEHCLRASPETTL--------TGGF 323

Query: 434 FAVALRRLIQP 444
           F   L R+ +P
Sbjct: 324 FIAVLERVEEP 334


>gi|19746175|ref|NP_607311.1| nucleolar protein [Streptococcus pyogenes MGAS8232]
 gi|50914292|ref|YP_060264.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|19748355|gb|AAL97810.1| putative nucleolar protein [Streptococcus pyogenes MGAS8232]
 gi|50903366|gb|AAT87081.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 436

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGAKNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   ++ +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALTMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|169833895|ref|YP_001694837.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996397|gb|ACA37009.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 434

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAYLQ 280


>gi|157150359|ref|YP_001450343.1| NOL1/NOP2/sun family protein [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075153|gb|ABV09836.1| NOL1/NOP2/sun family protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 434

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 20/240 (8%)

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +         G+ + Q+ +A +  Q+      + VLDL AAPGGK+      + 
Sbjct: 55  WGHYGKVSGKSSEHVTGLIYSQEPAAQMVAQVAHPHEGMKVLDLAAAPGGKSTHLLSYLN 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + + +++ +R + L  N++R       +     +         FD +++DAPCS  
Sbjct: 115 NTGLLVSNEINNKRSKILVENIERFGARNVLVTNESAERLAKVFSSFFDLIVLDAPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +     D   + A  QR++L   +  +  GG +V+S C+   +++EE+V  
Sbjct: 175 GMFRKQPDAMDYWSLDYPAQCAALQREILEDAVKMLANGGELVYSTCTWAPEENEEIVAW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L   P+ +  +P  +     ID           R+ P   +            F    R
Sbjct: 235 LLDEFPLELVDIPKLNGMTSGIDYPETA------RMYPHHFKGEGQ--------FVAKFR 280


>gi|312866111|ref|ZP_07726332.1| NOL1/NOP2/sun family protein [Streptococcus downei F0415]
 gi|311098515|gb|EFQ56738.1| NOL1/NOP2/sun family protein [Streptococcus downei F0415]
          Length = 438

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 118/306 (38%), Gaps = 26/306 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F E+ ++  G E    ++            V         K            L
Sbjct: 1   MTLPKEFIEKYQDLLGDEAADFLASFQQEA------VSAFRTNPLKKAQKSFPQPIPNSL 54

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +         G+ + Q+ +A +  Q+      + VLDL AAPGGKT      + 
Sbjct: 55  WGHYGKVSGKSIEHVTGLVYSQEPAAQMVAQVAAPQKGMRVLDLAAAPGGKTTHLLSYMD 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSST 319
           +   + + ++SK+R + L  N++R       +            K  FD +++DAPCS  
Sbjct: 115 NTGILISNEISKKRSKILVENVERFGASNVVVTNESPQGLAKVFKNYFDLIVLDAPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD       D   + A  Q+++L + ++ + PGG +V+S C+   +++E VV  
Sbjct: 175 GMFRKDPDACQYWSGDYPDQCARLQKEILTEAMTMLAPGGRLVYSTCTWSPEENEAVVTW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L + P  +EL+P+         + M        R+ P   +            F    +
Sbjct: 235 LLETYP-DLELLPVEKLNGMVGGIGMPQVA----RMYPHRFKGEGQ--------FLAHFQ 281

Query: 440 -RLIQP 444
            R   P
Sbjct: 282 DRRPTP 287


>gi|15675206|ref|NP_269380.1| putative nucleolar protein [Streptococcus pyogenes M1 GAS]
 gi|28895994|ref|NP_802344.1| nucleolar protein [Streptococcus pyogenes SSI-1]
 gi|71910769|ref|YP_282319.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|13622373|gb|AAK34101.1| putative nucleolar protein [Streptococcus pyogenes M1 GAS]
 gi|28811244|dbj|BAC64177.1| putative nucleolar protein [Streptococcus pyogenes SSI-1]
 gi|71853551|gb|AAZ51574.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 436

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   ++ +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALAMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|118100006|ref|XP_415710.2| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5 [Gallus
           gallus]
          Length = 465

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 158/448 (35%), Gaps = 38/448 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           M     ++ +LS + R    L   +   ++  +            + A+V  TLR+ P +
Sbjct: 1   MALYSAAAAVLSGLERGEGGLKNLVYGSDFPHARQ----------LYALVAETLRYGPVL 50

Query: 64  DAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE---NRH 119
           +A+LD   L+    +    L ++L   V  +L+               A+R +       
Sbjct: 51  EALLDGAALLRVEKKLPPPLAKVL---VYDLLFGK--GLKCGGRWKALARRHRARLEAEL 105

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
               V   + R                 +P + +  +      + V              
Sbjct: 106 ARLKVRRGVSRNEDLLELASGAGPEAPQVPRYVRVNVLKTSVDDVVEFFKR-HGYSFLGR 164

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                +++T + K   + L    + +            +  G   +QD ++ +P  L   
Sbjct: 165 ANSVEELKTLSGKKFMLDLHLPELLVFPPQTDFHDSRLYTSGHIILQDKASCLPAFLLSP 224

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                V+D CAAPG KT+    ++ +   + A DV  +RL  +   L R  + +  + + 
Sbjct: 225 SAGSHVIDACAAPGNKTSHLAAILKNKGHIFAFDVDTKRLATMNTMLMRAGVTSFKLAQQ 284

Query: 297 DA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           D                +L+D  CS +G + R P        + +   + FQR++L   +
Sbjct: 285 DFLTVDPHDPKYSKVKYILLDPSCSGSGMVARLPLDEAAPSAERLQALSGFQRRILSHAL 344

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
            F      +V+S CS+ ++++E+VV  VL+       L  +  + W    +A     E  
Sbjct: 345 RFPAVQ-RLVYSTCSVHQEENEDVVHAVLQEQGSAFRLANVFPS-WPCRGLATFPGAECC 402

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +R +P              GFF   L R
Sbjct: 403 LRASPADTL--------TQGFFVAVLER 422


>gi|21910418|ref|NP_664686.1| putative nucleolar protein [Streptococcus pyogenes MGAS315]
 gi|21904616|gb|AAM79489.1| putative nucleolar protein [Streptococcus pyogenes MGAS315]
          Length = 435

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 105/289 (36%), Gaps = 24/289 (8%)

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV-SL 215
                 + +     +          +                      L      +    
Sbjct: 11  YQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNTLWGYYGKLSGKS 65

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272
           P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      + +   + + ++S
Sbjct: 66  PEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYLDNTGLLVSNEIS 125

Query: 273 KRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           K+R + L  N++R       +     D         FD ++ D PCS  G  R+ PD + 
Sbjct: 126 KKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSGEGMFRKDPDAIQ 185

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                   + A  Q+ +L   ++ +KPGG +++S C+   +++E+VVQ +L +    +EL
Sbjct: 186 YWHHGYPAECAKLQKSILEDALAMLKPGGELIYSTCTWAPEENEDVVQWLLETY-TFLEL 244

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           V +         + +  +     R+ P   +            F   L+
Sbjct: 245 VDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKLK 281


>gi|146325710|sp|Q5E5C7|RSMF_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 473

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 117/264 (44%), Gaps = 21/264 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLF--GTLN 241
                 L  V     G  +         + S      G++++Q+AS+ +PV        +
Sbjct: 57  AEKQWDLEPVPWCDTGFWITRPESDTVKLGSTAEHMAGLFYIQEASSMMPVTALLKDNDD 116

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
               LD+ +APG KT Q    + +   + A + S  R++ L  N+ R  +    +   D 
Sbjct: 117 IEMALDMASAPGSKTTQLAAGMKNQGALVANEFSSSRVKVLCSNIQRCGVSNVALTHFDG 176

Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +     + FD++L+DAPCS  GTIR+ PD +     + +++    QR L+      +K
Sbjct: 177 RVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALK 236

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG++V+S C+L+ ++++ +   ++      V   PL   +  +     AL+ EG++ I 
Sbjct: 237 LGGVMVYSTCTLNHEENQNICHHLVEQFGDAVTFEPLGDLFESA---EKALTKEGFLHIY 293

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P + +          GFF   +R+
Sbjct: 294 PQIFDSE--------GFFVAKIRK 309


>gi|167747172|ref|ZP_02419299.1| hypothetical protein ANACAC_01886 [Anaerostipes caccae DSM 14662]
 gi|167654132|gb|EDR98261.1| hypothetical protein ANACAC_01886 [Anaerostipes caccae DSM 14662]
          Length = 453

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 19/257 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
             T         E     P +  G++++Q+ SA  P           VLDLCAAPGGK+ 
Sbjct: 58  PWTKNGFFVGPKEQPAKHPFYHAGLYYIQEPSAMAPAAFLPVEPGDKVLDLCAAPGGKST 117

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLV 312
           +    +     + + D+S  R + L  NL+   +    I+  +  +  P   + FD VLV
Sbjct: 118 ELGAKLRGEGILVSNDISITRTKALLKNLEMFGISNSVIVSEEPKNLVPVFYEYFDKVLV 177

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+    +       I      QR+++L  +  +KPGG +++S C+   ++
Sbjct: 178 DAPCSGEGMFRKGSSEIKNWAEYGIEPYVKIQREIILDAVKMLKPGGYLLYSTCTFSPEE 237

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----SPEGWIRITPDMLEKIDGVS 427
            E++++ +L   P  + L  L          A          +  IR+ P  ++      
Sbjct: 238 DEQLIEYLLEQEPG-LSLADLPDCEGFDRGHAEWTVSGLQDVKKCIRLWPHRIKGE---- 292

Query: 428 SGMDGFFAVALRRLIQP 444
               G F   L++   P
Sbjct: 293 ----GHFLALLKKDGSP 305


>gi|330038980|ref|XP_003239753.1| nucleolar protein [Cryptomonas paramecium]
 gi|327206678|gb|AEA38855.1| nucleolar protein [Cryptomonas paramecium]
          Length = 348

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 19/241 (7%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTA 268
           I ++P +  G++ +Q  S+   V       N  +LDL AAPG K    +Q++ +   V A
Sbjct: 114 ICAIPEYLAGLYTIQSISSFFSVICMNIKKNEKILDLAAAPGSKTTLISQVMNNTGIVVA 173

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPD 327
            D++  R++ L  N+ RL +    II  +          FD VL+DAPC+ TG +     
Sbjct: 174 NDINFLRIKSLIGNIHRLGVKNTVIINYNGILLNKYIKGFDKVLIDAPCTGTGILSHDNT 233

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           +  ++    I+     Q+KLLL  I         GG V++S CS+  +++E V++  L  
Sbjct: 234 IKISKIKSKIMTITRLQKKLLLSAIDMCNQKSINGGTVLYSTCSILVEENECVIEYALNK 293

Query: 384 SPIPVELVPLNSAYWKSIDM---AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + +    L       ++        +    +R  P +           DGFF   L++
Sbjct: 294 KRVEILATHLGCGMPGYVNFDKNRFNKNMNKCVRFFPHI--------HNTDGFFICKLKK 345

Query: 441 L 441
           L
Sbjct: 346 L 346


>gi|309806256|ref|ZP_07700269.1| NusB family protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167240|gb|EFO69406.1| NusB family protein [Lactobacillus iners LactinV 03V1-b]
          Length = 284

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 23/290 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  E+ + ++ ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKAKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL+     +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLSTEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKR 274
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ ++
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQK 283


>gi|291450278|ref|ZP_06589668.1| RNA-binding Sun protein [Streptomyces albus J1074]
 gi|291353227|gb|EFE80129.1| RNA-binding Sun protein [Streptomyces albus J1074]
          Length = 338

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 86/276 (31%), Gaps = 30/276 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVTLRFLPR 62
             R+++   L  V  +      +L      +          RD  L   +V  TLR    
Sbjct: 23  PVRILAFEALRAVDERDAYANLVLPALLRKAREDHPDTFEARDAALATELVYGTLRRQGT 82

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
            DA++   +   L      +  +L +   Q+L   +  +A V   VE A+    +   AK
Sbjct: 83  YDAIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPSHAAVSATVELARVVLGD-GRAK 141

Query: 123 LVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LA 167
            VN++LRR++ + ++                 +A +   P W    L +  G  R     
Sbjct: 142 FVNAVLRRITADDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGPRAGIED 201

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAE 220
           + +A      + L  +         L+ +                        ++    E
Sbjct: 202 LLEADNERPEVTLVARPGRTNSDTLLDGLGPDRALPGRWSPYAVRLTEGGEPGAIDAVRE 261

Query: 221 GVWWVQDASASIPVQLFGTLNNL----SVLDLCAAP 252
           G   VQD  + +                 LD CA P
Sbjct: 262 GDAGVQDEGSQLVALALAAAPLEGSDSRWLDACAGP 297


>gi|71903594|ref|YP_280397.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|71802689|gb|AAX72042.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 436

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   ++ +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALTMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|139473685|ref|YP_001128401.1| NOL1/NOP2/sun family protein [Streptococcus pyogenes str. Manfredo]
 gi|134271932|emb|CAM30170.1| NOL1/NOP2/sun family protein [Streptococcus pyogenes str. Manfredo]
          Length = 436

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   ++ +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALTMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|146302792|ref|YP_001190108.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera sedula DSM
           5348]
 gi|145701042|gb|ABP94184.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera sedula DSM
           5348]
          Length = 336

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 128/339 (37%), Gaps = 28/339 (8%)

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           + L N+     +      ++RIA      ++  ER    +  E       +C  PL   +
Sbjct: 6   SYLKNNDSLLYTYRITPDIKRIAEKYGFLDYMVERYLE-FLGEGTEDFLSSCSVPLTKSI 64

Query: 181 TVK---FDIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWVQDA 228
                  D      +L         I        +  +P          + +G +++Q  
Sbjct: 65  RCNSLKIDCGKLEKRLTDKGFSLKRIEWSRFGYRVEKVPPRPTLGATVEYMKGFYYIQGE 124

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285
           ++ IP ++        VLD+ ++PGGKT  +   + +   + AL+ +  RL K+R N+ R
Sbjct: 125 ASMIPPEVLSPKEGELVLDMASSPGGKTTHMAQLMNNRGTIVALEKNPARLRKIRSNISR 184

Query: 286 LHLYAEDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           L +    +              FD +L+DAPCS  G I   P        +D+      Q
Sbjct: 185 LGVSNVVLLWMGGEDVPKLGIEFDKILLDAPCSGEGLIPLDPSRKTKTKPEDLKNFQRTQ 244

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPIPVELVPLNSAYWKSI 401
             LL  G   +K GG +V+S CS+  ++ E +V      L      ++ +P         
Sbjct: 245 LTLLASGFKVLKRGGYMVYSTCSIAPEEDEVIVDFAVKYLGMRVEKIQGIPGERGLTSFK 304

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            ++ +      +RI P +          M+GFF   LR+
Sbjct: 305 GLSFSPELTQCLRIYPHLQ--------HMEGFFVCLLRK 335


>gi|227890992|ref|ZP_04008797.1| 23S rRNA m(5)C methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227867401|gb|EEJ74822.1| 23S rRNA m(5)C methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 456

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 118/303 (38%), Gaps = 20/303 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F E+ +   G +   A   +      I   +      +      +       + 
Sbjct: 1   MDLPKEFIEKYQKLLG-DEAEAFLASLDEKSVIGFRLNPLKRHYKDVDYDLTASVPFAQD 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
             + +          G  + QD SA     +        VLDLCAAPGGK+ Q    + +
Sbjct: 60  GFIGKVSGRSLEHQAGYVYSQDLSAMYVAAVANAQPGDKVLDLCAAPGGKSTQLAEQLNN 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R+      I     D      K  FD ++VDAPCS  G
Sbjct: 120 QGLLVSNEINTKRAKILAENMERIGAKNVIITNESPDNLAKVFKGYFDKIVVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+    +     D   + A  Q+ +L + +  +K GG +V+S C+   ++ E++V  +
Sbjct: 180 MFRKDHSAVKYWHKDYPAECARRQKLILEEAMKMLKTGGELVYSTCTFAPEEDEQIVAWL 239

Query: 381 LRSSPIPVELV----PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           L +  + +E +     ++S   +  D    L+    IR+ P   E            F  
Sbjct: 240 LENYDLTLEPITKYDGMDSGRPEFADGNEDLTK--TIRLMPHHFEGEGQ--------FLA 289

Query: 437 ALR 439
            L+
Sbjct: 290 KLK 292


>gi|309804769|ref|ZP_07698833.1| NusB family protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165879|gb|EFO68098.1| NusB family protein [Lactobacillus iners LactinV 09V1-c]
          Length = 284

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 23/290 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  +NAR V+   L  + +++      L+     S    LS  D+ L   IV  T+++ 
Sbjct: 1   MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118
             ++  L  ++ + L      L  LL +S  Q  +LD +   ++VD A + AK    +  
Sbjct: 56  LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113

Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +LVN ILR       +  E+ + ++ ++     P+W  +   + +GK + ++I  A 
Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKAKTISILQAG 173

Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226
             P    I +      +   HKL      +        +     SI +   F +G+  +Q
Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKR 274
           D++AS+ V  F    +  VLD C+APGGKTAQ+       KV ALD+ ++
Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQK 283


>gi|68073669|ref|XP_678749.1| sun-family protein [Plasmodium berghei strain ANKA]
 gi|56499314|emb|CAH96968.1| sun-family protein, putative [Plasmodium berghei]
          Length = 376

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 138/432 (31%), Gaps = 89/432 (20%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
             L   + L +  +    +  RD+  +   V   ++    +  +                
Sbjct: 20  SPLDIYMRLYFKSN---NIKNRDKPYISEHVYNIIKNKTLLAYM---------------- 60

Query: 83  QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142
                              + V L     K    +  +   +N+                
Sbjct: 61  ------------------SSPVSLYTNIIKTYFSSDKWKYEMNNE-----------KIPA 91

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLP 199
                 P+   ++L N YG+++ + +         I L V  +          L +  + 
Sbjct: 92  HVRYSFPKELYDQLVNCYGEKKSITLMSILNEKAPIFLRVNTNKISRNDLYKNLMSKGIS 151

Query: 200 TGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                      L    + + ++  + +G + +QD ++ I            VLD CA  G
Sbjct: 152 VEKCVNSPSGLLLTKNQILKNIHEYKKGYFEIQDEASQIVSSKIPVNPGDKVLDYCAGSG 211

Query: 254 GK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309
           GK    +  + +  K+   D+  R L + +  L R  +    ++  +           D 
Sbjct: 212 GKTLAFSGSMENTGKIYLHDIRDRMLSQAKIRLRRAGIQNYILLNSNHILLKKLFGYMDI 271

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           V+VDAPC+ TG +RR+P++ +    + + +    QRK+  + + ++K  G +V+  CS+ 
Sbjct: 272 VVVDAPCTGTGALRRNPEMKYKFTNEKLYEYMNLQRKIFEKALFYLKKNGKIVYITCSIL 331

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++    +   +   + +   P +S                               S  
Sbjct: 332 DAENVHQAKYFCQKHNLYLSEPPFHS----------------------------LPQSKS 363

Query: 430 MDGFFAVALRRL 441
           MDGFF     R 
Sbjct: 364 MDGFFLAIFERK 375


>gi|212693591|ref|ZP_03301719.1| hypothetical protein BACDOR_03108 [Bacteroides dorei DSM 17855]
 gi|237724191|ref|ZP_04554672.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D4]
 gi|212663844|gb|EEB24418.1| hypothetical protein BACDOR_03108 [Bacteroides dorei DSM 17855]
 gi|229437379|gb|EEO47456.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides dorei 5_1_36/D4]
          Length = 475

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 128/302 (42%), Gaps = 19/302 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F+ R   + G+E   A+  A  +   + + V  +   W+ ++    +      +
Sbjct: 1   MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVTGEPVLWASAGV 58

Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260
                      P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+  +   
Sbjct: 59  YLSQRPTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHVRSV 118

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318
              G+ + A +V + R + L  NL +       +   D        ++FD VL D PCS 
Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNVEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +    TD++      QR++L      +KPGG++++S C+ ++++ E+ V 
Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEKNVA 238

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +       +  VP+ S +    ++A    P    R  P  ++          GFF   L
Sbjct: 239 WIADELGAEILKVPVVSEWGIIGNLAGQNFP--VYRFLPHRVKGE--------GFFLAVL 288

Query: 439 RR 440
           R+
Sbjct: 289 RK 290


>gi|323484804|ref|ZP_08090161.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
 gi|323401910|gb|EGA94251.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
          Length = 468

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 127/304 (41%), Gaps = 25/304 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLN---AVMLPTG 201
           +P  + E+++    KE           P +  L V       E +A +       +   G
Sbjct: 6   LPSDYLEKMKKL-LKEEFEDYLTCFSEPPHYGLRVNRLKCTPEQFAAECGWKLTQIPWAG 64

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258
                +        P +  G++++Q+ SA  P  L        VLDLCAAPGGK+ +   
Sbjct: 65  DGFYYDRDLKPARHPWYFAGLYYLQEPSAMAPASLLPVEPGDKVLDLCAAPGGKSTELAA 124

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPC 316
            +     + + D+S  R + L  NL+        +     +      +  FD +LVDAPC
Sbjct: 125 KLQGEGLLFSNDISNSRAKALLKNLELAGAGNICVSSETPEKLARYFEGFFDKILVDAPC 184

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G  RR  D++ +         +  Q +++ + +  ++PGG++++S C+ D++++E  
Sbjct: 185 SGEGMFRRDGDMVKSYSQKGPEYYSRIQYEIVSEAVKMLRPGGMMLYSTCTFDEEENEGT 244

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           ++++L+     + LVPL         + ++      +R+ P  +           G F  
Sbjct: 245 IRRLLKEH-DDLHLVPLEKQDGFQPGIGLSE----CVRLFPHKIRGE--------GHFIA 291

Query: 437 ALRR 440
            L++
Sbjct: 292 LLKK 295


>gi|308234576|ref|ZP_07665313.1| NusB/RsmB/TIM44 [Atopobium vaginae DSM 15829]
 gi|328944365|ref|ZP_08241828.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829]
 gi|327491080|gb|EGF22856.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829]
          Length = 537

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 143/446 (32%), Gaps = 76/446 (17%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R V+   L  + +        L       AF  L Q ++  V+ +V   +     +D +
Sbjct: 9   SRTVAFKALCALRKNTTYAQDFLKHF---DAFCALLQDEKSFVQHVVCGVISSQSMVDKI 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L   +      + Y +   LR++  +++Y   A YAVV   VE  +    ++  A  VN+
Sbjct: 66  LAQYVKR-FAHQPYKVLICLRMATYELVYRQTAAYAVVSQYVELVRLV--DKRGASFVNA 122

Query: 127 ILRRV--------------------------------------------------SREKI 136
           +L R+                                                     + 
Sbjct: 123 VLHRIAAYDQANFARARQHLVRIIQDCHSYDDILRIINAAPISVESQHHLLQSFGFMCES 182

Query: 137 ELLQRIAGISIIPEWFKER-LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
           + L     +S +P W  +R   +            A     +      ++       L  
Sbjct: 183 DFLCEACLVSGLPTWIVKRVYHDRGLFICAHMALAAQAHVPFYVCKNPYNPPQIPDTLVP 242

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
           V    G   L+ +  +++           + D +A              +L++    G K
Sbjct: 243 VQSAWGSYTLQGISPALLYND-IEGQRLTISDFAAQCIAACVVHTRPKKLLEIGCGKGTK 301

Query: 256 TAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-----FDYC 302
           +  +     ++           D S ++L   R  L R ++                 + 
Sbjct: 302 SLLISYMNKRLSCPAISERVLCDKSSQKLACARKRLSRANITDPIRFVAHDATTLDTYFD 361

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD-----DIVKSACFQRKLLLQGISFVKP 357
             + FD V +DAPCS +GT+RRH +   T                 Q +LL      V  
Sbjct: 362 AHERFDTVFIDAPCSGSGTMRRHVEAPTTMSEAALDVARPHSLVHTQSELLRAASCLVNV 421

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRS 383
           GG ++++ CS+   ++E+VV   L S
Sbjct: 422 GGFLIYATCSIFSCENEDVVSAFLAS 447


>gi|218709402|ref|YP_002417023.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus
           LGP32]
 gi|254766870|sp|B7VNJ8|RSMF_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|218322421|emb|CAV18574.1| NOL1/NOP2/sun family protein [Vibrio splendidus LGP32]
          Length = 473

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNN 242
           +    +L  V     G  +   E    + +      G++++Q+AS+ +P         + 
Sbjct: 57  KEKGWELEPVPWCETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEADY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 QAVLDTAAAPGSKTTQIAALMNNRGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GTIR+  D +       +V  A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            G++V+S C+L  +++++V   +  +    VE   L S +    +     + EG++ I P
Sbjct: 237 NGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLESLF---DNAKATTTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 294 QVYDSE--------GFFVARIRKLA 310


>gi|237708750|ref|ZP_04539231.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 9_1_42FAA]
 gi|265755983|ref|ZP_06090450.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_1_33FAA]
 gi|229457176|gb|EEO62897.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 9_1_42FAA]
 gi|263234061|gb|EEZ19662.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_1_33FAA]
          Length = 475

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 128/302 (42%), Gaps = 19/302 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F+ R   + G+E   A+  A  +   + + V  +   W+ ++    +      +
Sbjct: 1   MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVTGEPVLWASAGV 58

Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260
                      P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+  +   
Sbjct: 59  YLSQRPTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHVRSV 118

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318
              G+ + A +V + R + L  NL +       +   D        ++FD VL D PCS 
Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNVEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +    TD++      QR++L      +KPGG++++S C+ ++++ E+ V 
Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEKNVA 238

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +       +  VP+ S +    ++A    P    R  P  ++          GFF   L
Sbjct: 239 WIADELGAEILKVPVVSEWGIIGNLAGQNFP--VYRFLPHRVKGE--------GFFLAVL 288

Query: 439 RR 440
           R+
Sbjct: 289 RK 290


>gi|329929396|ref|ZP_08283144.1| NOL1/NOP2/sun family protein [Paenibacillus sp. HGF5]
 gi|328936483|gb|EGG32928.1| NOL1/NOP2/sun family protein [Paenibacillus sp. HGF5]
          Length = 462

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 33/248 (13%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +        P  A G++++Q+ SA   V+L       ++LDL AAPGGKT+
Sbjct: 64  PWCETGYYYDESVRPGKHPYHAAGLYYIQEPSAMSAVELLNPQPGETILDLAAAPGGKTS 123

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLV 312
                ++    + + ++   R   L  N++R+ +    +     D         FD +++
Sbjct: 124 HIASNMMGRGLLVSNEIHPERARILAENVERMGITNTVVTSAAPDQLSRRFVACFDRIML 183

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+    +     + +      Q  ++ +    +KPGG + +S C+ +  +
Sbjct: 184 DAPCSGEGMFRKDAAAIAEWSPEHVDLCVARQWDIVQEAYRMLKPGGTLAYSTCTFNTAE 243

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +EE+++++L   P                     L  +   R+ P +            G
Sbjct: 244 NEEMIERILSQYPD--------------------LELQQMKRLWPHLERGE--------G 275

Query: 433 FFAVALRR 440
            F   L +
Sbjct: 276 HFVAILVK 283


>gi|8922322|ref|NP_060514.1| putative methyltransferase NSUN5 isoform 2 [Homo sapiens]
 gi|118573085|sp|Q96P11|NSUN5_HUMAN RecName: Full=Putative methyltransferase NSUN5; AltName:
           Full=NOL1-related protein; Short=NOL1R; AltName:
           Full=NOL1/NOP2/Sun domain family member 5; AltName:
           Full=Williams-Beuren syndrome chromosomal region 20A
           protein
 gi|7022196|dbj|BAA91515.1| unnamed protein product [Homo sapiens]
 gi|37674385|gb|AAQ96838.1| unknown [Homo sapiens]
 gi|119590098|gb|EAW69692.1| hCG39703, isoform CRA_a [Homo sapiens]
          Length = 429

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 155/410 (37%), Gaps = 29/410 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  R    S +P + +         + V 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     K   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G   R        T     +
Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +P    L P   
Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           A W    ++     E  +R +P+             GFF   + R+  P+
Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVPR 429


>gi|160892608|ref|ZP_02073398.1| hypothetical protein CLOL250_00138 [Clostridium sp. L2-50]
 gi|156865649|gb|EDO59080.1| hypothetical protein CLOL250_00138 [Clostridium sp. L2-50]
          Length = 460

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 128/312 (41%), Gaps = 25/312 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-------KLNAVML 198
             +PE F  R++   G +   A  +     ++  L V  +  +          +L  V  
Sbjct: 1   MNLPESFTNRIKTQLG-DEYEAYMNCLDQGMHHGLRVNTNKISVEDFLKISPFELKPVPW 59

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
            T G    +   +    P +  G++++Q+ SA  P  +    +   VLD+CAAPGGK+ +
Sbjct: 60  TTNGFYYDDKACTPSKHPYYYAGLYYIQEPSAMAPASILPVEDGDVVLDICAAPGGKSTE 119

Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVD 313
               +     + + D+S  R + L  NL+   +    +     +       + FD +L+D
Sbjct: 120 LAAKLHGTGFLISNDISNSRAKALLKNLELFGIGNMCVVSEAPNKLSTKFYQTFDKILID 179

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+   ++   + + +   A  QR +L + +  +KPGG +++S C+   +++
Sbjct: 180 APCSGEGMFRKSQSMVTAWENNGVELFAGLQRGILNEVVKMLKPGGTMLYSTCTFSPEEN 239

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSSG 429
           E+ ++ +L        +       + + + A   +     E   R+ P  +E        
Sbjct: 240 EQSIEYLLSLDDTLELIEVPKYPGFCNGNPAWGKTENAELEKCARLWPHHIEGE------ 293

Query: 430 MDGFFAVALRRL 441
             G F   + + 
Sbjct: 294 --GHFVALIHKK 303


>gi|327270610|ref|XP_003220082.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like [Anolis
           carolinensis]
          Length = 775

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/359 (21%), Positives = 124/359 (34%), Gaps = 64/359 (17%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
             +     L+N Y KE    + D     +   L    +   W   L+  +L       K 
Sbjct: 75  HAKEILHCLKNKYFKELENQMVDGQKIEMPQPLIWYPEELAWQTSLSRKVLRKSPELEKF 134

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------A 257
               +        G    Q+A + IP  L     +  +LD+CAAPG KT           
Sbjct: 135 HHFLVSETE---CGNISRQEAVSMIPPLLLNVQPHHKILDMCAAPGSKTAQLIEMLHADM 191

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307
            +      V A DV  +R   L     RL+  +  +   DA                  +
Sbjct: 192 NVPFPEGFVIANDVDNKRCYLLVHQAKRLNSPSILVANHDASSIPNLQITTNGKKEILFY 251

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG +V+S CS
Sbjct: 252 DRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCS 311

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI--------- 413
           L+  ++E V+  +L  S   +EL  ++S          I     ++ +G           
Sbjct: 312 LNPIENEAVIASLLEKSEGALELADVSSELPGLKRMPGITKWKVMTKDGQWFEDWKEVPS 371

Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
               +I P M                  +I        GFF   L +         QPK
Sbjct: 372 NRQTQIRPTMFPLKDEEKLKALNLERCLRILPHHQNTGGFFVAVLIKKSHMPWNKRQPK 430


>gi|72168871|ref|XP_787860.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115627173|ref|XP_001188217.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 508

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 155/430 (36%), Gaps = 36/430 (8%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADY 101
           + ++   + A+V  +L++   I+ ++D      L +  +  + L  V +   L+      
Sbjct: 36  NSKNIRQLYALVCESLKYATIIEEIIDNTA--FLQKVPWMERNLALVLLYDFLFGKKLAG 93

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161
           A      +   + K+            +  +     L  ++     IP + +  L     
Sbjct: 94  ACSGKYRKAVVKQKKELKAELQKMKEKKGATSLSDLLPSQVKDEVSIPRYIRVNLLKTSI 153

Query: 162 KERVLAISDACISPLYIDLTVKFDIET----------------WAHKLNAVMLPTGGIRL 205
            + + A  +A  + +      + + +                       A  L    + +
Sbjct: 154 DDVIAAFIEAGYTCVMTRDEAEEEKQDATPKYISNLSVDVSRSLGQYEFATDLHLDDVLV 213

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262
                   S P + +G   + D ++  P  +        V+D C+APG KT+ +     +
Sbjct: 214 FAARTDFHSHPLYLQGHIILMDKASCFPAYVLSAKPGSHVIDACSAPGNKTSHMASLLRN 273

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD----AVLVDAPCSS 318
            AK+ + D+  +R+  +   L+R  + A   I  D     P    +      +VD  CS 
Sbjct: 274 DAKIYSYDLDPKRISVMNTLLERAGVSAAKTIHQDFLTTDPCSKENMRVEYTIVDPSCSG 333

Query: 319 TGTIRRHPDVLWTRDTDDIVKS---ACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373
           +G   R   ++     +D  +       Q ++L   +SF  V+    VV+S CS+ ++++
Sbjct: 334 SGMASRKDYLVDDDMQEDRARLRSLHQLQCRILTHALSFPSVR---RVVYSTCSVHREEN 390

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E+VV+ VL        LVP+    W    ++ +   E       +   +    +   +GF
Sbjct: 391 EDVVRTVLEQ-SDGFRLVPVMQGTWDRRGLSTSQDGEEDH--IGECCVRASPHTDLTNGF 447

Query: 434 FAVALRRLIQ 443
           F     R  +
Sbjct: 448 FVALFERTGK 457


>gi|76802670|ref|YP_330765.1| rRNA methylase [Natronomonas pharaonis DSM 2160]
 gi|76558535|emb|CAI50127.1| probable rRNA methylase [Natronomonas pharaonis DSM 2160]
          Length = 303

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 12/260 (4%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           +        V    G  RL E      S P F  G  + Q+  +++P           VL
Sbjct: 46  DEAGVDYEPVDWHDGLFRLGEGESPGNSWP-FVHGWVYGQEEVSAVPALALAPQPGERVL 104

Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--- 300
           D CAAPG KT QL   +     +   D +  RL  LR N +R  +    +   DA +   
Sbjct: 105 DCCAAPGSKTTQLAALMDDRGLLVGNDNNLGRLSALRSNAERCGVTNIAVTRQDARNLSL 164

Query: 301 -YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                + FD  LVD PCS  GT+R++PD +     D I   A  Q+ +L + I   + GG
Sbjct: 165 KPFGGERFDRTLVDVPCSCEGTVRKNPDAVDGWSLDHIEGIAGVQKAILERAIEVTRDGG 224

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            VV+S C+   +++E V+Q  L      +    L       +        +  +R     
Sbjct: 225 TVVYSTCTFAPEENEAVLQHALDGGDCRLVDFDLPLESVPGVTDWEDERFDDAVR----K 280

Query: 420 LEKIDGVSSGMDGFFAVALR 439
            ++I    +   GFF   L 
Sbjct: 281 AQRIYPHHNDTGGFFCAKLE 300


>gi|164655415|ref|XP_001728837.1| hypothetical protein MGL_4004 [Malassezia globosa CBS 7966]
 gi|159102723|gb|EDP41623.1| hypothetical protein MGL_4004 [Malassezia globosa CBS 7966]
          Length = 763

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 141/372 (37%), Gaps = 46/372 (12%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           Q++++ +    VV++        +  +  A  ++ + + V                  E+
Sbjct: 344 QLVHMRI--QEVVNILSNLQTLSEPGKSRADYMDRLSKDVQTY-----------YGYNEF 390

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIE---TWAHKLNAVMLPTGGIRLKEL 208
                   +  +  +A  +A   P  + +            A KL    +    +     
Sbjct: 391 LTNMFLELFSPDEAIAFFEANEVPRPVTIRTNTLRTRRRDLAQKLINRGVSLEPVGPWSK 450

Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259
                      I + P +  G + +Q  S+ +P        +  +LD+ +APGGK   L 
Sbjct: 451 VGLQVFESSVPIGATPEYLVGEYMLQAVSSFLPCMALAPQPHERILDMASAPGGKVTYLS 510

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPC 316
             + +   V A D +K R++ L  N+ R+      +   D   +      FD V++D+PC
Sbjct: 511 ALMQNTGCVFANDSNKARIKSLTANIHRMGCRNVVVCNYDGRQFPKVIGGFDRVMLDSPC 570

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIVVFSNCSLDKQD 372
           S TG I +   V   +   D +  +  Q++L+L  I  V P    GG VV+S CS+  ++
Sbjct: 571 SGTGVISKDASVKTNKTKRDFILLSQLQKQLILCAIDSVNPRSESGGYVVYSTCSVMVEE 630

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSI-----DMAMALSPEGWIRITPDMLEKIDGVS 427
           +EEVV+  LR  P  V +VP    + +                   RI P +        
Sbjct: 631 NEEVVEYALRKRPN-VRIVPTGIDFGRDGLKCFRGKKFDERMPFCRRIFPHV-------- 681

Query: 428 SGMDGFFAVALR 439
             MDGFF   L+
Sbjct: 682 HNMDGFFVCKLK 693


>gi|222479906|ref|YP_002566143.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452808|gb|ACM57073.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC
           49239]
          Length = 314

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 100/261 (38%), Gaps = 19/261 (7%)

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
              +    +       +    +      +  G    Q+  + +P           V D C
Sbjct: 47  EEGVAYEPVDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPGLALDPQPGEHVWDAC 106

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK- 305
           AAPG KT Q+   +     V A D +  RL  LR N +RL +    +   DA ++  K  
Sbjct: 107 AAPGSKTTQIADAMNDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDARNFSTKPL 166

Query: 306 ---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD  LVDAPCS  GT R++ DV+     D +   A  Q+ +L + +   + GG VV
Sbjct: 167 AFDEFDRALVDAPCSCEGTCRKNLDVVDQWTLDHVHAVAGIQKGILARAVQATRSGGTVV 226

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPD 418
           +S C+   +++E V+  VL      +    L       +      + +  +    R+ P 
Sbjct: 227 YSTCTFAPEENEAVLDHVLGEEDCEIVAFDLPLDTVPGVTEWDGETYDESVTRAHRVYPH 286

Query: 419 MLEKIDGVSSGMDGFFAVALR 439
                    +   GFF   LR
Sbjct: 287 H--------NDTGGFFCAKLR 299


>gi|257096821|sp|B8CPH7|RSMF_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 474

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 20/254 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAP 252
               G     +    + +     +G++++Q+AS+ +P      +        VLD+ +AP
Sbjct: 65  WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMASAP 124

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307
           G KT Q+   + +   + A + S  R++ L  N+ R+ +    +   DA  +       F
Sbjct: 125 GSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYMFEIF 184

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D+VL+DAPCS  GTIR+ PD L   D +D+      Q+ L+      +K GG +V+S C+
Sbjct: 185 DSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSLKAGGELVYSTCA 244

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L +Q+++ V   + +  P  VE + L+S +        + + EG++ + P + +      
Sbjct: 245 LSRQENQNVCDYLKQRYPDAVEFINLSSLFP---GADKSCTEEGFLHVWPQIYDSE---- 297

Query: 428 SGMDGFFAVALRRL 441
               GFF   ++++
Sbjct: 298 ----GFFVAKIKKV 307


>gi|212635616|ref|YP_002312140.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
           piezotolerans WP3]
 gi|212557100|gb|ACJ29554.1| Nop2p [Shewanella piezotolerans WP3]
          Length = 547

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 20/254 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAP 252
               G     +    + +     +G++++Q+AS+ +P      +        VLD+ +AP
Sbjct: 138 WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMASAP 197

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307
           G KT Q+   + +   + A + S  R++ L  N+ R+ +    +   DA  +       F
Sbjct: 198 GSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYMFEIF 257

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D+VL+DAPCS  GTIR+ PD L   D +D+      Q+ L+      +K GG +V+S C+
Sbjct: 258 DSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSLKAGGELVYSTCA 317

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L +Q+++ V   + +  P  VE + L+S +        + + EG++ + P + +      
Sbjct: 318 LSRQENQNVCDYLKQRYPDAVEFINLSSLFP---GADKSCTEEGFLHVWPQIYDSE---- 370

Query: 428 SGMDGFFAVALRRL 441
               GFF   ++++
Sbjct: 371 ----GFFVAKIKKV 380


>gi|170746537|ref|YP_001752797.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653059|gb|ACB22114.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 370

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 15/233 (6%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSK 273
            F EG + +QD  + +   L       +++DLCA  GGKT   A    +GA++ A D   
Sbjct: 143 EFLEGWYEIQDEGSQLAALLAAPRAGETIVDLCAGGGGKTLALAAETGNGARLIATDGDP 202

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDV 328
           RRL  +   L R    AE                     D V+VDAPC+ +GT RR+PD 
Sbjct: 203 RRLAPIHERLRRSGAQAEVRTPRSGKARADVLADLDGKVDRVVVDAPCTGSGTWRRNPDA 262

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            W      +      Q ++L +    V+PGG +V+  CSL   +++  V  +L       
Sbjct: 263 KWRLRPGSLALRTTEQAQVLDRAARLVRPGGRIVYITCSLLSAENDAAVSGLLSGWRGRF 322

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
           ++VP +       D   A   +           ++  + +G DGF+   + R+
Sbjct: 323 DVVPADEVLTAGPDSLRAAVRKTA------HGIQMSPLRTGTDGFYVAVIARK 369


>gi|224075639|ref|XP_002188018.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5
           [Taeniopygia guttata]
          Length = 431

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 167/447 (37%), Gaps = 36/447 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M     ++ +L  + R    L  L+         +         + A+V+ TLR+   ++
Sbjct: 1   MALYSAAAAVLLRLERGEGGLKSLVYNSGFPHVRQ---------LYALVSETLRYAAVLE 51

Query: 65  AVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE---NRHF 120
            +LD   L+ +  +    L ++L   V  +L+               A+R +        
Sbjct: 52  KLLDGAALLRAEKKLAPQLAKVL---VYDLLFGK--GLKCGGRWKALARRHRARLEAELA 106

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
              V   + R            A  S +P + +         + +        + L    
Sbjct: 107 RMKVRHKVSRNEDLLASEQAVSAAASQVPRYVRVNTLKTCVDDVIDFFKCQGYAYLGKAN 166

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           +V+ +++  + K   + L    + +      +     +  G   +QD ++ +P  L G +
Sbjct: 167 SVE-ELKALSGKKFLLDLHLPELLVFPSQTDLHDNLLYTSGHIILQDKASCLPAFLLGPV 225

Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               V+D CAAPG KT+    ++ +  ++ A DV  +R+      L R  +    +++ D
Sbjct: 226 AGSHVIDACAAPGNKTSHLAAILKNKGQIFAFDVDPKRVATTNTLLTRAGVTGCQLVQQD 285

Query: 298 AFDYCPKKLFD----AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                P+         +L+D  CS +G + R P        + +   A FQR+ L   +S
Sbjct: 286 FLTVDPRDPKYSRVTHILLDPSCSGSGMVTRGPGEEVAPSAERLRALAGFQRRALSHALS 345

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           F      +V+S CSL ++++EEVVQ VL+       LV      W    +A     E  +
Sbjct: 346 FPALQ-RLVYSTCSLHREENEEVVQAVLQEWGSAFRLV-TAFPSWPCRGLAAFPGAESCL 403

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           R +P          +   GFF   L R
Sbjct: 404 RASP--------TETLTHGFFVAVLER 422


>gi|304403868|ref|ZP_07385530.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus curdlanolyticus
           YK9]
 gi|304346846|gb|EFM12678.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus curdlanolyticus
           YK9]
          Length = 590

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 130/338 (38%), Gaps = 50/338 (14%)

Query: 144 GISIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAH---KLNAVML 198
               +P  F E+++       +  ++  DA         ++K   E WA         + 
Sbjct: 1   MKYDLPTVFVEQMKRLLDGQFDEFMSSYDAPRLYGLRSNSLKVGQEQWAKLSPWQLRPIP 60

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
             G     +  +     P +  G++++Q+ SA  PV+L        VLDLCAAPGGK+ Q
Sbjct: 61  WCGTGSYYDGEDRPGKHPYYHAGLYYIQEPSAMAPVELLDVQPGHRVLDLCAAPGGKSTQ 120

Query: 259 LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVD 313
           +         + + D +  R + L  N++   +    ++  +     P     FD +LVD
Sbjct: 121 IAAKLQGAGMLVSNDNAAERTKALAKNIELAGVRNAVVLNEEPASLVPAFTGWFDRILVD 180

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+   ++   +   + + +  QR +L    + + PGG++V+S C+    ++
Sbjct: 181 APCSGEGMFRKDESMIAAWERHSVERCSLMQRDILRDAAAMLAPGGVLVYSTCTFSPVEN 240

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA----------------------LSPE- 410
           E  +  +L +    +E VP+  A                                 + E 
Sbjct: 241 EAQIAAILAA-DDELEAVPVRLATGFVSGRPEWGQAAVDREDGAQQGEQQLHAAAATKED 299

Query: 411 --------GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   G +R+ P +L+          G FA  +RR
Sbjct: 300 EADGWAACGMVRLWPHLLDGE--------GHFAAVIRR 329


>gi|331091190|ref|ZP_08340031.1| hypothetical protein HMPREF9477_00674 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404637|gb|EGG84176.1| hypothetical protein HMPREF9477_00674 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 461

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 113/270 (41%), Gaps = 17/270 (6%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           ++V+   E    ++  +     G             P +  G++++Q+ SA  P      
Sbjct: 41  ISVEKFKEICPFEIRPIPWIENGFYYDGDKVQPAKHPYYFAGLYYLQEPSAMTPANRLPI 100

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                VLD+CAAPGGK  +    +     + A D+S  R + L  N++   +    ++  
Sbjct: 101 EPGDKVLDVCAAPGGKATELGAKLKGQGVLIANDISNSRAKGLLKNIEIFGVGNVLVLSE 160

Query: 297 DAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           +           FD +L+DAPCS  G  R+   ++   +       A  QR +++Q    
Sbjct: 161 EPGKLEEYFPEYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGPSFFAKIQRSIVMQAARM 220

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPE-- 410
           +KPGG++++S C+ D +++E  ++ +L+  P     ++VP         ++  +   +  
Sbjct: 221 LKPGGMILYSTCTFDAEENEGTIEYLLKECPEFFLKDIVPYEGFAQGKPEVTESKLEDFR 280

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +RI P  +           G +   L++
Sbjct: 281 KTVRIWPHKMHGE--------GHYLALLQK 302


>gi|119383346|ref|YP_914402.1| Fmu (Sun) domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119373113|gb|ABL68706.1| Fmu (Sun) domain protein [Paracoccus denitrificans PD1222]
          Length = 383

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 140/439 (31%), Gaps = 77/439 (17%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             +L  ++    +    L      S F      D+  VR +V   LR L    A+   + 
Sbjct: 11  IDILDRILD-GQAAEAALIRWARASRFAG--SGDRAAVRDLVFDALRRLRSRAALGGALS 67

Query: 72  ISSL-------PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
              L            +           +   +    +V+     QA R         L 
Sbjct: 68  GRGLLLGMCREEGIDPAT----------LFTGEGHAPSVLSEGEGQAGRAPTPDEALDLP 117

Query: 125 NSILR--RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           + +L   R +         +A     P W +  L          A+++  I+        
Sbjct: 118 DWLLPLWRKALGGDAEPVALAMRDRAPVWLRVNLRRADPARAAAAMAEQGIATAP----- 172

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
             D+ T            G                + EG+  +QD S  +   L     +
Sbjct: 173 HPDLPTALRITEGARRLAGCH-------------AYREGLVELQDLSPQMACALLPAQGS 219

Query: 243 LSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             +LD CA  GGK   L   GA  VTA D+   R+  L    +R  +             
Sbjct: 220 --LLDFCAGGGGKALALAAQGAGPVTAHDIDAGRMADLPARAERAGVRIRLAAPGKV--- 274

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD V+ D PCS +GT RR PD  W    DD+ + A  Q ++L Q   FV  GG +
Sbjct: 275 --AGRFDTVVADVPCSGSGTWRRGPDAKWRLTRDDLEQLAARQCRILDQAAGFVADGGHL 332

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
            +  CS+   ++++ VQ  L  +                             R    +L 
Sbjct: 333 AYMTCSVLDAENDDQVQGFLARN-----------------------------RRFEQVLA 363

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +     +  DGF+   +RR
Sbjct: 364 RRFTPLTASDGFYLALMRR 382


>gi|262282377|ref|ZP_06060145.1| NOL1/NOP2/sun family protein [Streptococcus sp. 2_1_36FAA]
 gi|262261668|gb|EEY80366.1| NOL1/NOP2/sun family protein [Streptococcus sp. 2_1_36FAA]
          Length = 434

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 19/232 (8%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
              P    G+ + Q+ ++ +  Q+      + VLDL AAPGGK+      + +   + + 
Sbjct: 63  GKSPEHVTGLIYSQEPASQMVAQVAHPHEGMRVLDLAAAPGGKSTHLLSYLNNTGLLVSN 122

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +++ +R + L  N++R       +     +         FD +++DAPCS  G  R+ PD
Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESAERLAKVFPSYFDLIVLDAPCSGEGMFRKQPD 182

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            +     D   + A  QR++L   +  +   G +V+S C+   +++EE+V  +L   P+ 
Sbjct: 183 AMDYWSLDYPAQCAALQREILEDAVKMLANCGELVYSTCTWAPEENEEIVAWLLDEFPLE 242

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +  +P  +     ID           R+ P   +            F    R
Sbjct: 243 LVDLPKINGMTPGIDYPETA------RMYPHRFKGEGQ--------FVAKFR 280


>gi|292655744|ref|YP_003535641.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
 gi|291371381|gb|ADE03608.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
          Length = 313

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 111/311 (35%), Gaps = 26/311 (8%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPE 210
             +R       E     +     P  + +  +K  +      L+   +            
Sbjct: 3   PLQRYAPLVDDEEAFFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEPTDWHPGIL 62

Query: 211 SI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA 264
            +       + P F  G    Q+  +++P           V D CAAPG KT Q+     
Sbjct: 63  ELEDSSPGTNWPYFH-GWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMD 121

Query: 265 KV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-------------LFD 308
                   D +  RL  LR N +RL +    +   DA ++  K               FD
Sbjct: 122 DEGVLVGNDNNLGRLSALRHNAERLGVTNLVVSNQDARNFSMKPYGERTPERDASFEQFD 181

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VLVDAPCS  GT R++PDVL     + +   A  Q+ +L + +   K GG VV+S C+ 
Sbjct: 182 RVLVDAPCSCEGTCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQVTKAGGTVVYSTCTF 241

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
              ++E ++  VL      V    +   +  +  +      E    +T     ++    +
Sbjct: 242 APDENEAILDFVLEREDCEVVEWDVPGGFETAPGITEWEGDEYDPSVT--KARRVYPHHN 299

Query: 429 GMDGFFAVALR 439
              GFF   L 
Sbjct: 300 DTGGFFTAKLE 310


>gi|331266100|ref|YP_004325730.1| NOL1/NOP2/sun family protein [Streptococcus oralis Uo5]
 gi|326682772|emb|CBZ00389.1| NOL1/NOP2/sun family protein [Streptococcus oralis Uo5]
          Length = 434

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 118/299 (39%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ F E+      ++       +          V    E+     +A+     G   
Sbjct: 1   MQFPKGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K         P    G+ + Q+ +A +  Q+      + VLDL AAPGGK+ Q    + +
Sbjct: 60  KVS----GKSPEHVTGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLTN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +            K  FD +++DAPCS  G
Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESAGRLAKVFKGYFDVIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +    TD   + A  QR++L   ++ +  GG +V+S C+   +++EE++  +
Sbjct: 176 MFRKQPDAMDYWSTDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIIHWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L +     EL+P+         + +  +     R+ P   +            F   L+
Sbjct: 236 LDTY--EFELLPVEHVNGMVAGIDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280


>gi|148980382|ref|ZP_01816025.1| Sun/nucleolar protein family protein [Vibrionales bacterium SWAT-3]
 gi|145961254|gb|EDK26566.1| Sun/nucleolar protein family protein [Vibrionales bacterium SWAT-3]
          Length = 449

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 120/261 (45%), Gaps = 20/261 (7%)

Query: 191 HKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVL 246
            +L  V     G  +   E    + +      G++++Q+AS+ +P         N  +VL
Sbjct: 37  WELEPVPWCETGFWITADETETPLGNSAEHMSGLFYIQEASSMMPPSALFQGEENYQAVL 96

Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301
           D  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D   +  
Sbjct: 97  DTAAAPGSKTTQIAALMDNRGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGG 156

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FDAVL+DAPCS  GTIR+  D +       +V+ A  Q+ L+      +KP G++
Sbjct: 157 WLPEQFDAVLLDAPCSGEGTIRKDADAIKNWTYQSVVEIADTQKDLIESAFHALKPNGVL 216

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C+L  +++++V   +  +    VE   L S +    +     + EG++ I P + +
Sbjct: 217 VYSTCTLSTEENQQVCHHLKETFGDAVEFESLESLF---DNAKATTTEEGFLHIFPQVYD 273

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
                     GFF   +R+L 
Sbjct: 274 SE--------GFFVARIRKLA 286


>gi|42519213|ref|NP_965143.1| hypothetical protein LJ1288 [Lactobacillus johnsonii NCC 533]
 gi|41583501|gb|AAS09109.1| hypothetical protein LJ_1288 [Lactobacillus johnsonii NCC 533]
          Length = 463

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E+ +N  G+E       A  SP      +      +     ++  P    + 
Sbjct: 1   MSLPIEFVEKYKNLLGEEESSKFFTAINSPSKKGFRLNPLKNNYQDVQYSLKEPIEFTKD 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262
               E       +  G  + QD SA  P           VLDLCAAPGGK+  L     +
Sbjct: 61  GYYGEISGRDSEWTGGYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + A ++SK R + LR NL+R       +I    D         FD +LVDAPCS  G
Sbjct: 121 TGLLVANEISKSRAKDLRENLERWGATNVVVINESPDRLSKKLPHFFDKILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P        D ++     Q+++L + +  +KPGG +V+S C+   ++ EE+V  +
Sbjct: 181 MFRKDPAATQYWSPDYVLTCQTRQKEILSEAMKMLKPGGEIVYSTCTYSPEEDEEIVAWL 240

Query: 381 LRSSPIPVELVPLNSAYWKS-IDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + + P+ +E + L S       D + +  PE    +R+                  F   
Sbjct: 241 VENYPLEIEPLKLYSGMSAGRPDWSKSNMPELKETVRLWFQNGVGEGQ--------FVAH 292

Query: 438 LR 439
           L+
Sbjct: 293 LK 294


>gi|301802143|emb|CBW34880.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae INV200]
          Length = 434

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 16/284 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
           L      +  V   +     ID+          R+ P   +   
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEG 273


>gi|39997843|ref|NP_953794.1| NOL1/NOP2/sun family protein [Geobacter sulfurreducens PCA]
 gi|39984788|gb|AAR36144.1| NOL1/NOP2/sun family protein [Geobacter sulfurreducens PCA]
 gi|298506778|gb|ADI85501.1| NOL1/NOP2/Sun (tRNA and rRNA cytosine-C5-methyltransferase) family
           protein [Geobacter sulfurreducens KN400]
          Length = 319

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 10/239 (4%)

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265
             ++   P F EG  ++Q  S+             +VLDL AAPGGKTA +   + +  +
Sbjct: 81  RRALTESPPFREGRIYIQSLSSMTAPLALAPEPGETVLDLAAAPGGKTAMMAAMMENRGR 140

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323
           ++A++  + R  +++ NLD            D      K    FD VL+DAPCSS     
Sbjct: 141 LSAVEAVRGRFFRMKANLDHQGATMVRTYLTDGRSVGRKCPEMFDRVLLDAPCSSEARFT 200

Query: 324 RHPDVLW-TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R     W       + ++A  QR L+   +  ++PGG++++  CS   +++E +V  VLR
Sbjct: 201 RLNPESWAHWSPRKVEEAARKQRGLIRSALEALRPGGLLLYCTCSFSPEENELIVNDVLR 260

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG-MDGFFAVALRR 440
                + +  ++       +    L+      + PD+   +  +    MDGFF   +R+
Sbjct: 261 RDGDNLRVCAVD---LPLPNRRPGLTRWKGKELHPDLARAVRILPDRLMDGFFLCLIRK 316


>gi|194679118|ref|XP_593209.3| PREDICTED: NOL1/NOP2/Sun domain family, member 5-like [Bos taurus]
          Length = 317

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 23/251 (9%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L        V+D CAAPG KT+ L     
Sbjct: 45  VFPAQTDLHDHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLK 104

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCS 317
           +  K+ A D   +RL  +   L R  +   ++ E D     P          +L+D  CS
Sbjct: 105 NQGKIFAFDQDAKRLASMATLLARAGVSCCELAEQDFLAVSPSDQRYCQVQYILLDPSCS 164

Query: 318 STGTIRRHPDVLWTRDT--DDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373
            +G   R  +   +     + +   A FQ++ L   ++F  ++    +V+S CS+ ++++
Sbjct: 165 GSGMPSRQLEEPKSCTPSPERLRALAAFQQRALSHALTFPALR---RLVYSTCSVCQEEN 221

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E+VV+  L+ SP    L P+  + W    ++     E  +R +P+             GF
Sbjct: 222 EDVVRAALQQSPGAFRLAPVLPS-WPHRGLSAFPGAEHCLRASPETTL--------TGGF 272

Query: 434 FAVALRRLIQP 444
           F   L R+ +P
Sbjct: 273 FIAVLERVEEP 283


>gi|167756652|ref|ZP_02428779.1| hypothetical protein CLORAM_02189 [Clostridium ramosum DSM 1402]
 gi|237733940|ref|ZP_04564421.1| RNA methylase [Mollicutes bacterium D7]
 gi|167702827|gb|EDS17406.1| hypothetical protein CLORAM_02189 [Clostridium ramosum DSM 1402]
 gi|229383021|gb|EEO33112.1| RNA methylase [Coprobacillus sp. D7]
          Length = 440

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 24/283 (8%)

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGV 222
              A          +          LN                      +   P F  G+
Sbjct: 20  FESALNQKPIKSFYLNPLKHGSIEHLNSAFLTKHPYINDAYFYDYENYQLGKHPYFNCGL 79

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
           +++Q+ SA          ++  VLD+CAAPGGKT            + A D++K R   L
Sbjct: 80  YYIQEPSAMAVANCLDFDHDDYVLDMCAAPGGKTCFTASKLSSAGLMIANDINKLRAGIL 139

Query: 280 RCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R  L    +   D           FD +++DAPCS  G  R+    + T   + +
Sbjct: 140 SENVERFGLQNTIVTNSDPVKLEKYFNNFFDKIILDAPCSGEGMFRKLDQAVETWSIEKV 199

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + A  QR L+      +K  GI+++S C+   +++E+ V+ +  ++ + +EL+ +    
Sbjct: 200 NECAYIQRNLINSAYQMLKDEGILIYSTCTYSLEENEDQVKYM--TNDLQMELLEIK--- 254

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            K   MA     +  +R+ P + +            F   L++
Sbjct: 255 -KQPGMASGYQNDKVVRMYPHLNKGEGQ--------FIALLKK 288


>gi|90961974|ref|YP_535890.1| putative 23S rRNA m(5)C methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|301301011|ref|ZP_07207172.1| NOL1/NOP2/sun family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|90821168|gb|ABD99807.1| Putative 23S rRNA m(5)C methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|300851368|gb|EFK79091.1| NOL1/NOP2/sun family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 456

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 118/303 (38%), Gaps = 20/303 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F E+ +   G +   A   +      I   +      +      +       + 
Sbjct: 1   MDLPKEFIEKYQKLLG-DEAEAFLASLDEKSVIGFRLNPLKRHYKDVDYDLTASVPFAQD 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
             + +          G  + QD SA     +        VLDLCAAPGGK+ Q    + +
Sbjct: 60  GFIGKVSGRSLEHQAGYVYSQDLSAMYVAAVANAQPGDKVLDLCAAPGGKSTQLAEQLNN 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R+      I     D      K  FD ++VDAPCS  G
Sbjct: 120 QGLLVSNEINTKRAKILAENMERIGAKNVIITNESPDNLAKVFKGYFDKIVVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+    +     D   + A  Q+ +L + +  +K GG +V+S C+   ++ E++V  +
Sbjct: 180 MFRKDHSAVKYWHKDYPAECAHRQKLILEEAMKMLKTGGELVYSTCTFAPEEDEQIVAWL 239

Query: 381 LRSSPIPVELV----PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           L +  + +E +     ++S   +  D    L+    IR+ P   E            F  
Sbjct: 240 LENYDLTLEPITKYDGMDSGRPEFADGNEDLTK--TIRLMPHHFEGEGQ--------FLA 289

Query: 437 ALR 439
            L+
Sbjct: 290 KLK 292


>gi|289167577|ref|YP_003445846.1| hypothetical protein smi_0731 [Streptococcus mitis B6]
 gi|288907144|emb|CBJ21978.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 434

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 114/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEAPGSFPDAIPQTPWGYYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGFLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V+ +
Sbjct: 176 MFRKQPDAMDYWSLDYPNQCASLQREILEDAVTMLAEGGRLVYSTCTWAHEENEEIVKWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L      +  V   +     ID+          R+ P   +            F   L+
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280


>gi|297623339|ref|YP_003704773.1| Fmu (Sun) domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297164519|gb|ADI14230.1| Fmu (Sun) domain protein [Truepera radiovictrix DSM 17093]
          Length = 466

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 109/304 (35%), Gaps = 30/304 (9%)

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE------ 210
                     A+  A   P ++ L V   +++   +  A+                    
Sbjct: 11  MQALLGGEAEALFGALQGPPHVGLRVNT-LKSAPERFEALSPWPLERLPWCRSGYRLRVP 69

Query: 211 ----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSG 263
                    P  A GV+++Q+ SA    +         VLDL AAPGGK   L       
Sbjct: 70  EGAPRPGLHPLHAAGVYYLQEPSAMAVAEAVAPEPGAWVLDLAAAPGGKATHLGALLRGS 129

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGT 321
             + A +V   R+  L  NL+R  +    ++    +        LFD VL+DAPCS  G 
Sbjct: 130 GLLVANEVVPGRVRALGENLERCGVPNALLVSEPVERLAARWGGLFDYVLLDAPCSGEGM 189

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R+  D L    T  + + A  QR LL +  + VKPGG++V+S C+   +++E  V   L
Sbjct: 190 FRKSDDALAMWSTATVARCALRQRALLGEAAALVKPGGVLVYSTCTFAPEENEGAVAAFL 249

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSGMDGFFAV 436
           R+ P    L PL            A            R  P              G F  
Sbjct: 250 RAHP-EFTLAPLTLPGAAPGRPDWAADEADASLAHAARFWPHRAPGE--------GHFVA 300

Query: 437 ALRR 440
            L R
Sbjct: 301 RLHR 304


>gi|332366475|gb|EGJ44223.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1059]
          Length = 434

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MDFPKGFKEK-YEQILGTEAADFFATFEEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYS 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     D+     +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVVVTNESADSLAQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVSWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|71005896|ref|XP_757614.1| hypothetical protein UM01467.1 [Ustilago maydis 521]
 gi|46097107|gb|EAK82340.1| hypothetical protein UM01467.1 [Ustilago maydis 521]
          Length = 674

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 123/316 (38%), Gaps = 23/316 (7%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                   +  E+L   +     +   +A  +P  + +            A  L    + 
Sbjct: 295 CTYYGYNAFLAEKLFELFTPAEAIEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVN 354

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              I                I + P +  G + +Q AS+ +P        N  VLD+ +A
Sbjct: 355 LEPIGAWSKVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASA 414

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PGGK+  L   + +   V A D +K R++ L  N+ RL      +   D   +      F
Sbjct: 415 PGGKSTYLSALMQNTGTVFANDSNKNRIKSLVANIHRLGCKNVVVCNYDGRQFPKVIGGF 474

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIVVF 363
           D VL+D+PCS TG I +   V   +   D       Q++LLL  I  V P    GG VV+
Sbjct: 475 DRVLLDSPCSGTGVIHKDQSVKVNKSERDFALLTHLQKQLLLCAIDSVNPRSSTGGYVVY 534

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS+  +++EEVVQ  LR     V++V     + +    +   S      +      +I
Sbjct: 535 STCSVMVEENEEVVQYALRKRSN-VKIVDTGIQFGRDGFKSFGRSKFDERMVY---ARRI 590

Query: 424 DGVSSGMDGFFAVALR 439
                 +DGFF   L+
Sbjct: 591 FPHVHNLDGFFVCKLK 606


>gi|168334695|ref|ZP_02692831.1| sun protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 229

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 21/238 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R +    L  V ++   L  +L          +L  RD+ L   I   TL++ 
Sbjct: 1   MK---HLREIVVDALVKVEKEGAYLQLVL-----KKDLEILESRDRGLATEIATGTLKYQ 52

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ID +++ V    + + K  ++ L+R+SV Q+ YLD V  +A ++ AV+ AK  +    
Sbjct: 53  IAIDYIINQVSSIKVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKS-RGFAG 111

Query: 120 FAKLVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +K VN +LR + R  I    +  +    IPEW  E   + YG +    I ++  +   +
Sbjct: 112 LSKFVNGVLRSIERSNIALPAKNWSVYYSIPEWIIELWVSSYGSDIAKQICESTTARAEV 171

Query: 179 DLTVKF---DIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
              V       +     L           +        E  +SI  +P F    + +Q
Sbjct: 172 VARVNTLKVSRDELVECLKLDGLATKPAAIFEDEYLYLEGAQSIADMPSFVSRFFTIQ 229


>gi|302561751|ref|ZP_07314093.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302479369|gb|EFL42462.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 334

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 77/240 (32%), Gaps = 21/240 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L      +        RD  L   +V  TLR     D
Sbjct: 22  PVRILAFEALRAVDERDAYANLVLPPLLRKARENGDFEARDAALATELVYGTLRRQGTYD 81

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           AV+   +   L      +  +L +   Q+L   +  +A V   VE A+    +   AK V
Sbjct: 82  AVVAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRAKFV 140

Query: 125 NSILRRV-------------SREKIELLQRIAGISIIPEWFKERLENFYGKERV--LAIS 169
           N++LR++                  +    +A +   P W    L +  G  R     + 
Sbjct: 141 NAVLRKIAQDDLDGWLERVAPPYDQDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEELL 200

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            A      + L  +    T A  L+      G    +  P ++    G   G       +
Sbjct: 201 RADNDRPEVTLVARPGRATPAELLDEEAAEPG----RWSPYAVRLTEGGEPGAITAVGEA 256


>gi|302386349|ref|YP_003822171.1| Fmu (Sun) domain protein [Clostridium saccharolyticum WM1]
 gi|302196977|gb|ADL04548.1| Fmu (Sun) domain protein [Clostridium saccharolyticum WM1]
          Length = 454

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 18/252 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    E  E     P +  G++++Q+ SA  P  L   +    VLDLCAAPGGK+ 
Sbjct: 62  PWIPNGFYYEGDERPAKDPYYYAGLYYLQEPSAMTPASLLNIVPGDKVLDLCAAPGGKST 121

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDAVLV 312
           +    +     + + D+S  R + L  NL+   +    +   E         + FD +LV
Sbjct: 122 ELGAKLKGKGLLVSNDISSSRAKALLKNLELWGIGNICVTSEEPKKLKEAFGEFFDKILV 181

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+  D++ + +       A  QR+++ Q +  +  GG +++S C+    +
Sbjct: 182 DAPCSGEGMFRKDGDMVKSYEEHGPEYYAGIQREIMDQAVDMLVAGGFLLYSTCTFSLCE 241

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +E+++++ L      +EL+ L          +  +S  G +R+ P  +           G
Sbjct: 242 NEDIIRRTLELHK-DMELISLPLFE----GASGGISLSGCLRLFPHKIRGE--------G 288

Query: 433 FFAVALRRLIQP 444
            F   L++   P
Sbjct: 289 HFMALLKKKGSP 300


>gi|228477488|ref|ZP_04062124.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus salivarius
           SK126]
 gi|228250923|gb|EEK10111.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus salivarius
           SK126]
          Length = 436

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 112/299 (37%), Gaps = 23/299 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P  F E+  N   ++       +               +      +A+     G   
Sbjct: 1   MQFPSDFIEK-YNNLLRDEAEDFFASFDQEAVSAYRTNPLKKQQKDFPDAIPETPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K            A G+ + Q+ +A +  Q+        VLDL AAPGGK+      + +
Sbjct: 60  KIS----GKSADHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGGKSTHLLSYLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     D      K  FD ++ D PCS  G
Sbjct: 116 TGLLVSNEINPKRSKILVENIERFGARNVIVTNTSADKLVKVFKNYFDTIVFDGPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     +   + A  Q+ +L  G+  + PGG +++S C+   +++E VV  +
Sbjct: 176 MFRKDPDAIQYWHKEYPNELAQLQKDILSDGLKMLAPGGQLIYSTCTWSPEENEGVVAWI 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L ++P  +ELV +      S  +    +     R+ P   +            F    +
Sbjct: 236 LENNP-DLELVAIPKLNGMSDGIDFPETA----RMYPHHFKGEGQ--------FVAKFQ 281


>gi|163814116|ref|ZP_02205508.1| hypothetical protein COPEUT_00269 [Coprococcus eutactus ATCC 27759]
 gi|158450565|gb|EDP27560.1| hypothetical protein COPEUT_00269 [Coprococcus eutactus ATCC 27759]
          Length = 469

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 119/311 (38%), Gaps = 25/311 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-------KLNAVML 198
            ++P+ F ER+++  G E    I     S +Y  + V     +          +L  V  
Sbjct: 1   MVLPKKFDERIKSQLGDEYDDYIKC-FDSDMYHGIRVNTSKISVEDFLKISPFELEPVPW 59

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
              G        +    P +  G++++Q+ SA  P  +        VLD+CAAPGGK+ +
Sbjct: 60  TKNGFYYDHKKYTPSKHPYYYAGLYYIQEPSAMTPASVLDIDEGDVVLDICAAPGGKSTE 119

Query: 259 LIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVD 313
           L         + + D+S  R + L  NL+   +    ++    +      ++ FD +L+D
Sbjct: 120 LAAKLGGTGILISNDISNSRAKALLKNLELFGIGNMCVVSEPPNNLSKAFEETFDKILID 179

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+   ++   + +     A  QR +L +    +KPGG +++S C+   ++ 
Sbjct: 180 APCSGEGMFRKSSSMMTAWENNGTELFAGLQRGILKEVCKMLKPGGRLLYSTCTFSPEED 239

Query: 374 EEVVQKVLR----SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           E  V+ +L        I                       +   R+ P  L+        
Sbjct: 240 ERSVEYLLSIDDCIHLIDFPKYEKFDDGNPEWGETGNPDLKKCARLWPHHLKGE------ 293

Query: 430 MDGFFAVALRR 440
             G F     +
Sbjct: 294 --GHFIALFEK 302


>gi|322384175|ref|ZP_08057885.1| hypothetical protein PL1_1809 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151067|gb|EFX44384.1| hypothetical protein PL1_1809 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 465

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 33/248 (13%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    +        P  A G++++Q+ SA    ++        VLDL AAPGGK++
Sbjct: 70  PWCPTGYYYKEETRPGKHPYHAAGLYYLQEPSAMSAAEILNPEPGDIVLDLAAAPGGKSS 129

Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           Q+         + A ++   R + L  N++R+      ++         K    FD ++V
Sbjct: 130 QIAGKLLGRGLLVANEIHPGRAKILAENIERMGAGNVLVVNASPQQLAEKLPLFFDKIIV 189

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ P+ +     + +   A  Q  +L   I  +KPGG++V+S C+ ++++
Sbjct: 190 DAPCSGEGMFRKDPEAIKEWSPEHVQMCAARQMDILPDAIRMLKPGGLLVYSTCTFNQEE 249

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +E  ++ +L   P                     +S E   RI P + +          G
Sbjct: 250 NEGTIRALLADYPEM-----------------RLISEE---RIWPHLQKGE--------G 281

Query: 433 FFAVALRR 440
            +   L +
Sbjct: 282 HYVALLAK 289


>gi|323351785|ref|ZP_08087439.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis VMC66]
 gi|322122271|gb|EFX93997.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis VMC66]
          Length = 434

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 109/292 (37%), Gaps = 23/292 (7%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
            E        E                       E   +  +A+     G   K   +S 
Sbjct: 7   FEEKYEQILGEEAADFFATFDEEPISSFRSNPLKEGQQNFSDAIPQTDWGFYGKVSGKSA 66

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
             + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +   + + 
Sbjct: 67  EHVTG----LVYSQEPAAQMVAQIAAPSKEMKVLDLAAAPGGKSTHLLSFLDNTGLLVSN 122

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +++ +R + L  N++R       +     +      +  FD +++DAPCS  G  R+ PD
Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEGMFRKQPD 182

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                  D   + A  QR++L   +S +   G +V+S C+   +++E++V  +L   P+ 
Sbjct: 183 ATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWLLEEFPLE 242

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +  +P  +   + I            R+ P   +            FA   R
Sbjct: 243 LIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|153853073|ref|ZP_01994482.1| hypothetical protein DORLON_00467 [Dorea longicatena DSM 13814]
 gi|149753859|gb|EDM63790.1| hypothetical protein DORLON_00467 [Dorea longicatena DSM 13814]
          Length = 458

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 109/259 (42%), Gaps = 19/259 (7%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           ++  +     G        S    P +  G++++Q+ SA  P           VLD+CAA
Sbjct: 53  EIRKIPWIENGFYYDGDKVSPAKHPYYFAGLYYLQEPSAMTPANRLPVEPGDKVLDVCAA 112

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306
           PGGK  +    +     + A D+S  R + L  N++   +    +   E    +    + 
Sbjct: 113 PGGKATELGAKLQGEGVLIANDISSSRAKGLLKNIEVFGIGNVLVLSEEPGRLENYFTEY 172

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L+DAPCS  G  R+   ++   +       +  QR ++LQ    +KPGG++++S C
Sbjct: 173 FDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFSNLQRNIILQAARMLKPGGLMLYSTC 232

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLE 421
           + D  ++E +++ + +  P    ++P+ +       +           +  +RI P  ++
Sbjct: 233 TFDPSENERIIEHLKKEYP-EFHVLPMENYEGFCPGIPEVTEEKDEELKKTVRIFPHKMK 291

Query: 422 KIDGVSSGMDGFFAVALRR 440
                     G +   L++
Sbjct: 292 GE--------GHYVALLQK 302


>gi|261408357|ref|YP_003244598.1| Fmu (Sun) domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261284820|gb|ACX66791.1| Fmu (Sun) domain protein [Paenibacillus sp. Y412MC10]
          Length = 462

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 33/247 (13%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                   +        P  A G++++Q+ SA   V+L       ++LDL AAPGGKT+ 
Sbjct: 65  WCDTGYYYDESVRPGKHPYHAAGLYYIQEPSAMSAVELLNPQPGETILDLAAAPGGKTSH 124

Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVD 313
               ++    + + ++   R   L  N++R+ +    +     D         FD +++D
Sbjct: 125 IASKMMGRGLLVSNEIHPERARILAENVERMGITNTVVTSAAPDQLSRRFVACFDRIMLD 184

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+    +     + +      Q  ++ +    +KPGG + +S C+ +  ++
Sbjct: 185 APCSGEGMFRKDAAAIAEWSPEHVDLCVARQWDIVQEAYRMLKPGGTLAYSTCTFNTAEN 244

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           EE+++ +L   P                     L  +   R+ P +            G 
Sbjct: 245 EEMIEHILSQYPD--------------------LELQQMKRLWPHLERGE--------GH 276

Query: 434 FAVALRR 440
           F   L +
Sbjct: 277 FVAILVK 283


>gi|323691877|ref|ZP_08106131.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14673]
 gi|323504084|gb|EGB19892.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14673]
          Length = 468

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 126/304 (41%), Gaps = 25/304 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLN---AVMLPTG 201
           +P  + E+++    KE           P +  L V       E +A +       +   G
Sbjct: 6   LPSDYLEKMKKL-LKEEFEDYLTCFSEPPHYGLRVNRLKCTPEQFAAECGWKLTQIPWAG 64

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258
                +        P +  G++++Q+ SA  P  L        VLDLCAAPGGK+ +   
Sbjct: 65  DGFYYDRDLKPARHPWYFAGLYYLQEPSAMAPASLLPVEPGDKVLDLCAAPGGKSTELAA 124

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPC 316
            +     + + D+S  R + L  NL+        +     +      +  FD +LVDAPC
Sbjct: 125 KLQGEGLLFSNDISNSRAKALLKNLELAGAGNICVSSETPEKLARYFEGFFDKILVDAPC 184

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G  RR  D++ +            Q +++ + +  ++PGG++++S C+ D++++E  
Sbjct: 185 SGEGMFRRDGDMVKSYSQKGPEYYNRIQYEIVSEAVKMLRPGGMMLYSTCTFDEEENEGT 244

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           ++++L+     + LVPL         + ++      +R+ P  +           G F  
Sbjct: 245 IRRLLKEH-DDLHLVPLEKQDGFQPGIGLSE----CVRLFPHKIRGE--------GHFIA 291

Query: 437 ALRR 440
            L++
Sbjct: 292 LLKK 295


>gi|270288816|ref|NP_001161819.1| putative methyltransferase NSUN5 isoform 3 [Homo sapiens]
 gi|194389950|dbj|BAG60491.1| unnamed protein product [Homo sapiens]
          Length = 470

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 154/409 (37%), Gaps = 29/409 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  R    S +P + +         + V 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     K   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G   R        T     +
Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +P    L P   
Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           A W    ++     E  +R +P+             GFF   + R+  P
Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVP 428


>gi|332361837|gb|EGJ39640.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK355]
          Length = 434

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 26/244 (10%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
                   G+ + Q+ +A +  Q+      + VLDL AAPGGK+      + +   + + 
Sbjct: 63  GKSAEHVTGLVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDNTGLLVSN 122

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +++ +R + L  N++R       +     +      +  FD +++DAPCS  G  R+ PD
Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESAERLAQVFQGYFDLIVLDAPCSGEGMFRKQPD 182

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                  D   + A  QR++L   +S +   G +V+S C+   +++E +V  +L   P+ 
Sbjct: 183 ATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEGIVAWLLEEFPLE 242

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR-------R 440
           +  +P  +   + I            R+ P   +            FA   R       +
Sbjct: 243 LIDIPKVNGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFRYTGENSCK 288

Query: 441 LIQP 444
            I+P
Sbjct: 289 KIKP 292


>gi|327461399|gb|EGF07730.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1]
 gi|327474034|gb|EGF19447.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK408]
 gi|327489257|gb|EGF21050.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1058]
          Length = 434

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 19/232 (8%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
                   G+ + Q+ +A +  Q+      + VLDL AAPGGK+      + +   + + 
Sbjct: 63  GKSAEHVTGLVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDNTGLLVSN 122

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +++ +R + L  N++R       +     D         FD +++DAPCS  G  R+ PD
Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESADRLAQVFSGYFDLIVLDAPCSGEGMFRKQPD 182

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                  D   + A  QR++L   +S +   G +V+S C+   +++E++V  +L   P+ 
Sbjct: 183 ATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWLLEEFPLE 242

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +  +P  +   + I            R+ P   +            FA   R
Sbjct: 243 LIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|332867777|ref|XP_519138.3| PREDICTED: putative methyltransferase NSUN5 [Pan troglodytes]
          Length = 470

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 154/409 (37%), Gaps = 29/409 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  R    S +P + +         + V 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     K   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDSLMPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G   R        T     +
Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYREVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +P    L P   
Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           A W    ++     E  +R +P+             GFF   + R+  P
Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSG--------GFFVAVIERVEVP 428


>gi|295424864|ref|ZP_06817579.1| NOL1/NOP2/sun family protein [Lactobacillus amylolyticus DSM 11664]
 gi|295065430|gb|EFG56323.1| NOL1/NOP2/sun family protein [Lactobacillus amylolyticus DSM 11664]
          Length = 463

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 20/303 (6%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +P+ F E+ +   GKE+  A+ ++          +           +            
Sbjct: 3   NLPDTFIEKYQKLLGKEKAAALFESMNQETKKAYRINSLKAHQKVSYSNAQAVPFIPNAY 62

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263
                    P +  G  + QD +A  P  L        VLDLCAAPGGKT    + + + 
Sbjct: 63  YGEVK-GEDPEWVSGTVYSQDPAAMFPAYLAQIEPGQKVLDLCAAPGGKTTALGEALQNA 121

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321
             + A ++S  R++ LR NL+R  +    I   D+F         FD +LVDAPCS  G 
Sbjct: 122 GLLVANEISSVRVKALRENLERWGISNALITNDDSFALAKVFPEFFDVILVDAPCSGEGM 181

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R++PD +     D ++     Q+++L + +  ++PGG +V+S C+   ++ EE+V  ++
Sbjct: 182 FRKNPDAVSYWSPDYVLTCRKRQQEILTEAVKKLRPGGKLVYSTCTFSPEEDEEIVAWLV 241

Query: 382 RSS-----PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           ++      P  VE   ++    + +D  +    +  +R+ P                F  
Sbjct: 242 KTFQMTIEPTQVESKKISHGQARFVDDNLPEL-DRTLRLWPQDDLGEGQ--------FVA 292

Query: 437 ALR 439
            LR
Sbjct: 293 VLR 295


>gi|308807909|ref|XP_003081265.1| Fmu (ISS) [Ostreococcus tauri]
 gi|116059727|emb|CAL55434.1| Fmu (ISS) [Ostreococcus tauri]
          Length = 276

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 99/236 (41%), Gaps = 16/236 (6%)

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV 266
                I  +  + EG + VQD  + + V          VLD CA  GGKT  +       
Sbjct: 49  PANGGIFGVNAWREGWFEVQDEGSQLIVAALEAKAGERVLDACAGNGGKTLAIAAEMKFG 108

Query: 267 TAL--DVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
                D+ +RRL  L  N +R         ++  +      + FDAVLVDAPCSS G +R
Sbjct: 109 EVCVFDIDRRRLAHLEANAERAGSRDMVTTVQGTSLQDLAPQSFDAVLVDAPCSSVGALR 168

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R P +    D  D  + A  Q  +L +  + VKPGG +V++ CS+   ++ EVV+     
Sbjct: 169 RTPSLRHMHD--DPNELAKIQLGILREAAALVKPGGRLVYATCSVLSFENHEVVRAFESE 226

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                E +P + A+   I  +     E    + P +         G DGFF    R
Sbjct: 227 FADIYEPLPFDDAF---IAASRERDREHERSLLPHL--------HGTDGFFIARFR 271


>gi|284165311|ref|YP_003403590.1| RNA methylase, NOL1/NOP2/sun family [Haloterrigena turkmenica DSM
           5511]
 gi|284014966|gb|ADB60917.1| RNA methylase, NOL1/NOP2/sun family [Haloterrigena turkmenica DSM
           5511]
          Length = 302

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 101/261 (38%), Gaps = 19/261 (7%)

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
              L           L+    S  S      G    Q+  +++P  +        V D C
Sbjct: 47  EEGLAYEQADWNPRVLRLETGSPGSTWTSFHGFTHGQEEVSAVPPVVLDPQPGERVWDSC 106

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---- 302
           AAPGGK  QL   +     V A D +  R+  LR N +RL   +  +   DA +Y     
Sbjct: 107 AAPGGKATQLAALMGDEGTVVANDNNLGRISALRFNAERLGATSLAVTNADARNYSLNRF 166

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD  LVDAPC+  GTIR++PD L       I   +  Q+ +L + I   + GG VV
Sbjct: 167 DFDEFDRALVDAPCTCEGTIRKNPDTLDNWSEGAIASVSGVQKGILRRAIQATREGGTVV 226

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGWIRITPD 418
           +S C+   +++E VVQ  +      V    ++  Y   +          S E   RI P 
Sbjct: 227 YSTCTFAPEENEAVVQHAVEEEDCRVVDFDIDLEYAPGLTEWDGEEFDSSLERAARIYPH 286

Query: 419 MLEKIDGVSSGMDGFFAVALR 439
                    +   GFF   L 
Sbjct: 287 --------QNDTGGFFVAKLE 299


>gi|84394273|ref|ZP_00992999.1| Sun/nucleolar protein family protein [Vibrio splendidus 12B01]
 gi|84375112|gb|EAP92033.1| Sun/nucleolar protein family protein [Vibrio splendidus 12B01]
          Length = 473

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNN 242
           +    +L  V     G  +   E    + +      G++++Q+AS+ +P        ++ 
Sbjct: 57  KEKGWELEPVPWCETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEVDY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 QAVLDTAAAPGSKTTQIAALMNNRGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GTIR+  D +       +V  A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            G++V+S C+L  +++++V   +  +    VE   L S +    +     + EG++ I P
Sbjct: 237 NGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLESLF---DNAKATTTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 294 QVYDSE--------GFFVARIRKLA 310


>gi|322387522|ref|ZP_08061131.1| NOL1/NOP2/sun family protein [Streptococcus infantis ATCC 700779]
 gi|321141389|gb|EFX36885.1| NOL1/NOP2/sun family protein [Streptococcus infantis ATCC 700779]
          Length = 437

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 117/299 (39%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ F ++       +   A   +          +    E      +A+     G   
Sbjct: 1   MQFPDGFVKK-YETILGDEARAFLASFDDEAVSAFRINPLKERQLSFSDAIPNTPWGYYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P    G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHVTGLVYSQEPAAQMVAQVAQPKPGMKVLDLAAAPGGKSTQLASYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 DGLLVSNEISSKRSKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   I+ +  GG +V+S C+   +++EE+VQ +
Sbjct: 176 MFRKQPDAMDYWSVDYPSQCASLQREILSDAITMLADGGRLVYSTCTWAPEENEEIVQWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L S     EL+P+         + +  +     R+ P   +            F   L+
Sbjct: 236 LDSY--HFELIPVQHINGMVPGIDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280


>gi|331004266|ref|ZP_08327744.1| hypothetical protein HMPREF0491_02606 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411431|gb|EGG90843.1| hypothetical protein HMPREF0491_02606 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 20/241 (8%)

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKV 266
           +SI   P +  G++++Q+ SA  P    G ++   VLDLCAAPGGK+ Q    ++    +
Sbjct: 89  KSISKNPYYFAGLYYIQEPSAMTPAMAAGIVSGDKVLDLCAAPGGKSTQAASYLMGEGLL 148

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRR 324
            + D S  R++ L+ N++   +    I   D  +        FD ++VDAPCS  G  RR
Sbjct: 149 VSNDFSASRVKALQKNIEVSGIDNVLITNEDPKNLSKVYIEYFDKIIVDAPCSGEGMFRR 208

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
              V               Q  +L +    +KPGG +++S C+  K + E  + + L S 
Sbjct: 209 DSAVFKAYLGRGPEFFTGLQVSILTEAAKMLKPGGTLIYSTCTYSKVEDEGSLLQFLESH 268

Query: 385 PIP-VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
               ++ +  +  + +S ++       G IR+ P  +E          G F   L++ I+
Sbjct: 269 KEFKIDKIATDFGFEESKELP------GTIRLFPHKIEGE--------GHFVARLKKDIK 314

Query: 444 P 444
           P
Sbjct: 315 P 315


>gi|159898460|ref|YP_001544707.1| NOL1/NOP2/sun family RNA methylase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891499|gb|ABX04579.1| putative RNA methylase, NOL1/NOP2/sun family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 481

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 22/270 (8%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV--QLFGTLNNLSV 245
            +  +L  V     G +L+    ++        G +++QDA++ +PV           SV
Sbjct: 54  QYGWQLEQVPFCPTGWQLRNEVGNLSRTVEHQMGHYYIQDAASMLPVELFELPPEAEPSV 113

Query: 246 LDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFD 300
           LDL AAPGGKT  +I        V A D + +R+  L+ N+ R    +  I     +   
Sbjct: 114 LDLTAAPGGKTTHIISQLQDRGLVVANDSNLQRIAGLKGNIQRWGSTSAVITNQPGERMG 173

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD VL+DAPCS                + +       Q KLL   +   +P G 
Sbjct: 174 RWLPEQFDYVLLDAPCSGEALRTSERHTSRLVSSHERNTLQQRQIKLLESALQAARPNGH 233

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-------I 413
           VV+S CSL  ++ E V+  +L+  P  ++++ + ++        +A   + +       +
Sbjct: 234 VVYSTCSLAPEEDEAVLDALLKRYPEQIQIMSIPTSVPIEAPGLLAAGSQHYDPSIAKAL 293

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           R+ P +            GFFA  + +  Q
Sbjct: 294 RLWPHLY--------NTAGFFAALIIKRDQ 315


>gi|94994502|ref|YP_602600.1| 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|94548010|gb|ABF38056.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 436

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 109/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   +  +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALVMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|94990580|ref|YP_598680.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94544088|gb|ABF34136.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 436

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 109/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   +  +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALVMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|326435871|gb|EGD81441.1| hypothetical protein PTSG_02162 [Salpingoeca sp. ATCC 50818]
          Length = 798

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 105/283 (37%), Gaps = 67/283 (23%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---------KVTAL 269
            +G    Q+A + IP  L     +  VLD+CAAPG KTAQLI              V A 
Sbjct: 194 EQGNISRQEAVSMIPPFLLDVKPHHKVLDMCAAPGSKTAQLIEMIHAEGNSMPEGLVVAN 253

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSS 318
           D   +R   L     RL      I   DA  +             +  FD VL D PCS 
Sbjct: 254 DADNKRCYMLVHQTKRLQSPCFMITNHDASIFPSLYTTAADGTKQRLYFDRVLADVPCSG 313

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            GT+R++  +  + +  + +     Q ++L +G+  +   G++V+S CSL+  ++E VV 
Sbjct: 314 DGTLRKNVTIWRSWNPMNAIGLHPLQSRILERGLQLLAVDGLIVYSTCSLNPIENEAVVA 373

Query: 379 KVLRSSPIPVELVPLNSA---------------------------------------YWK 399
            +LR     VELV ++S                                        +  
Sbjct: 374 HMLRKHKGSVELVDVSSQLPRLRRSPGLKTWTIMDRSQNVYASPEDCKDNSKIHTTMFPP 433

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           S D    +  E   R+ P   +          GFF   LR+  
Sbjct: 434 SKDELEWMRLERCCRLLPHHQD--------TGGFFVAVLRKTA 468


>gi|332359770|gb|EGJ37585.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK49]
          Length = 434

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     D         FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESADRLAQVFSGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P  +EL+ ++     +  +    +     R+ P   +            FA   R
Sbjct: 236 LEEFP--LELIDISKINGMTEGIGFPETA----RMYPHRFKGEGQ--------FAAHFR 280


>gi|328946085|gb|EGG40231.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1087]
          Length = 434

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     D         FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESADRLAQVFSGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P  +EL+ ++     +  +    +     R+ P   +            FA   R
Sbjct: 236 LEEFP--LELIDISKINGMTEGIGFPETA----RMYPHRFKGEGQ--------FAAHFR 280


>gi|310658497|ref|YP_003936218.1| RNA methylase, nol1/nop2/sun family [Clostridium sticklandii DSM
           519]
 gi|308825275|emb|CBH21313.1| putative RNA methylase, NOL1/NOP2/sun family [Clostridium
           sticklandii]
          Length = 455

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 114/264 (43%), Gaps = 19/264 (7%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           +++  A  +   +  +      ++ +     P +  G++++Q+ SA   V        + 
Sbjct: 46  ELKAIADFIGEEIPWSQDGFYYDINQRPAKSPLYHAGLYYIQEPSAMAVVNNIEIQPGMK 105

Query: 245 VLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD+CAAPGGKT  +         + + D++ +R + +  N++   +    I   +    
Sbjct: 106 VLDICAAPGGKTINIASKLKGEGLLVSNDINNQRTKAILKNIELYGVSNALITNENHHVL 165

Query: 302 CPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +++DAPCS  G  R+  D++ +     ++++   Q++LL      ++PGG
Sbjct: 166 EKVFLEFFDRIILDAPCSGEGMFRKDEDLIKSW-ERSVIETIPVQKELLDSCALMLRPGG 224

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           I+++S C+ ++ ++E+ +   L  +    E + +           +  S     R+ P  
Sbjct: 225 IMIYSTCTFNEDENEKQILDFLARN-DNFECIEIPKCNGLISRDILPQSA----RLLPHK 279

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443
           L          +G F   LR+  +
Sbjct: 280 L--------NGEGHFLCLLRKAYK 295


>gi|313126366|ref|YP_004036636.1| nol1/nop2/sun family RNA methylase [Halogeometricum borinquense DSM
           11551]
 gi|312292731|gb|ADQ67191.1| NOL1/NOP2/sun family putative RNA methylase [Halogeometricum
           borinquense DSM 11551]
          Length = 312

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 103/265 (38%), Gaps = 17/265 (6%)

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
           A  +           LK       +   +  G    Q+  +++P           V D C
Sbjct: 47  AENVGYEPTDWHPGILKLDERGPGTTWPYFHGWLHGQEEVSALPALALDPEPGEIVWDAC 106

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           AAPG KT QL   +     +   D +  RL  LR N +RL +    +   DA +Y  K  
Sbjct: 107 AAPGSKTTQLADLMDDTGVLIGNDNNLGRLSALRHNAERLGVSNLVVTNQDARNYSLKPF 166

Query: 307 ------------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                       FD  LVDAPCS  GTIR++PD L     + +   A  Q+ +L + +  
Sbjct: 167 GEDTDDSAAIDAFDKALVDAPCSCEGTIRKNPDALDRWTMNHVHSVAGIQKGILRRAVQA 226

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
            +PGG VV+S C+   +++E V+  VL      +        +  +  +      E    
Sbjct: 227 TRPGGTVVYSTCTFAPEENEAVLDHVLGEEDCKLVPWDAPDNFETAPGVTEWEDEEYDPS 286

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALR 439
           +  ++  ++    +   GFF   L 
Sbjct: 287 V--ELAHRVYPHHNDTGGFFCAKLE 309


>gi|237843673|ref|XP_002371134.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211968798|gb|EEB03994.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221504886|gb|EEE30551.1| ribosomal RNA small subunit methyltransferase B, putative
           [Toxoplasma gondii VEG]
          Length = 396

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 130/434 (29%), Gaps = 92/434 (21%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83
            L   +   +       ++  D++ + + +   +++   +D +                 
Sbjct: 35  PLDLFVRHYFKCHK--SINSADKLFITSHLYQIIKWKGLLDFL-----------TPPPAA 81

Query: 84  QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143
              R+                                      I  R             
Sbjct: 82  WSSRIRTY----------------------------------FISDRWKLHSTNQRLPPH 107

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPT 200
                PE    RLE   G  + + + +         L V  +    E     L    +  
Sbjct: 108 LRCSFPEPLFARLEAALGTVKAIQVCNILNEDPPTFLRVNSNKITRERLYKFLVNKGVLV 167

Query: 201 GGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                     +    + +  LP F  G + +QD ++ +            VLD CA  GG
Sbjct: 168 EKCANSPFGLVLPQRQKLGDLPEFKSGFFDIQDEASQLVAFKLQVEPGQKVLDYCAGSGG 227

Query: 255 KTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLF 307
           KT        +  ++   D  +  L + +  L R  +            D      +   
Sbjct: 228 KTLAFGPLLGNTGRLYLHDTREHMLLEAKKRLKRAGIPNYQLLFPHATPDHVFKKLRGQM 287

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG-GIVVFSNC 366
           D VL D PC++TGT+RR+P++ W    D +      QR++    + ++KP  G +++S  
Sbjct: 288 DWVLCDVPCTATGTLRRNPELKWKYSDDKLFDLVALQREIFASALIYMKPNKGRILYSTS 347

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           S+  +++   V+   +   + +   P ++                               
Sbjct: 348 SILDEENVHQVKFFCQQHGLVLSEAPFHA----------------------------LPQ 379

Query: 427 SSGMDGFFAVALRR 440
           S GMDGFF   L +
Sbjct: 380 SKGMDGFFCAILEK 393


>gi|86148632|ref|ZP_01066914.1| Sun/nucleolar protein family protein [Vibrio sp. MED222]
 gi|85833588|gb|EAQ51764.1| Sun/nucleolar protein family protein [Vibrio sp. MED222]
          Length = 473

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 20/265 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNN 242
           +    +L  V     G  +   E    + +      G++++Q+AS+ +P         + 
Sbjct: 57  KEKGWELEPVPWCETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEADY 116

Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +VLD  AAPG KT Q+   + +   + A + +  R++ L  N++R  +    +   D  
Sbjct: 117 QAVLDTAAAPGSKTTQIAALMNNHGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176

Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +     + FDAVL+DAPCS  GTIR+  D +       +V  A  Q+ L+      +KP
Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKP 236

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            G++V+S C+L  +++++V   +  +    V    L S +    +     + EG++ I P
Sbjct: 237 NGVLVYSTCTLSTEENQQVCHHLKETFGDAVVFESLESLF---DNAKATTTEEGFLHIFP 293

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
            + +          GFF   +R+L 
Sbjct: 294 QVYDSE--------GFFVARIRKLA 310


>gi|312867633|ref|ZP_07727839.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis F0405]
 gi|311096696|gb|EFQ54934.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis F0405]
          Length = 434

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 102/260 (39%), Gaps = 20/260 (7%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                 +   V               +       A G+ + Q+ +A I  Q+      + 
Sbjct: 35  RTNPLKEAQKVFDDPIPNTPWGHYGKVSGKSIEHATGLVYSQEPAAQIVAQVAQPKPGMK 94

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299
           VLDL AAPGGKT Q    + +   + + ++ K R + L  N++R       +     D  
Sbjct: 95  VLDLAAAPGGKTTQLLSYLDNQGLLVSNEIHKGRSKILVENVERFGARNVLVTNESADRL 154

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +++DAPCS  G  R+ PD +     D   + +  QR++L      + PGG
Sbjct: 155 AKVFSGFFDLIVLDAPCSGEGMFRKQPDAMDYWSIDYPRECSLLQREILEDAFKMLVPGG 214

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+S C+   +++EEVV  +L +  + +E +   +   + ID           R+ P +
Sbjct: 215 SLVYSTCTWAPEENEEVVSWLLENYDLELETIEKINGMAEGIDHPETA------RMYPHL 268

Query: 420 LEKIDGVSSGMDGFFAVALR 439
            +            F    R
Sbjct: 269 FKGEGQ--------FVAKFR 280


>gi|257388869|ref|YP_003178642.1| RNA methylase, NOL1/NOP2/sun family [Halomicrobium mukohataei DSM
           12286]
 gi|257171176|gb|ACV48935.1| RNA methylase, NOL1/NOP2/sun family [Halomicrobium mukohataei DSM
           12286]
          Length = 305

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 15/237 (6%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
            + P F  G  + Q+  +++PV++ G      + D CAAPG KT+Q          V A 
Sbjct: 71  ANWPYFH-GWIYGQEEVSAVPVRVLGPEPGERIWDACAAPGSKTSQIAARQGDDGVVVAT 129

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-------FDAVLVDAPCSSTGTI 322
           D +  RL  LR N ++L + +  +   DA ++  K         +D  LVD PCS  GT+
Sbjct: 130 DSNLGRLSALRTNTEQLGITSVAVTHEDARNHSLKPFGDDDSAEYDRALVDVPCSCEGTV 189

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++PD L     + +   A  Q+ +L + I   KPGG VV+S C+   +++E V+   L 
Sbjct: 190 RKNPDTLDEWTLEHVEGIAGVQKGVLRRAIQTTKPGGTVVYSTCTFAPEENEAVLDYALE 249

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +    +    +  A    +      S +  +R       +I    +   GFF   L 
Sbjct: 250 TEACRLVPFEIPLASTGGVTEWQGESYDDSVR----QAHRIYPHHNDTGGFFCAKLE 302


>gi|145350379|ref|XP_001419585.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579817|gb|ABO97878.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 359

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 129/362 (35%), Gaps = 37/362 (10%)

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161
             V  + E A+    +      + +    V     + +      + +P    + L   YG
Sbjct: 12  RAVVPSAEDARAMYGDGAADLRIAAREENVRWSSDDAIAVG-QKTALPRPLVDALIREYG 70

Query: 162 KERVLAISDACISPLYIDLTVKF-----DIETWAHKLNAVMLPTGGIRL----------- 205
           +E  LA   A  +P  +             +  A  L    + T   +            
Sbjct: 71  REEALAFGAAINAPGPVTCRANGALARGGADEVAAMLAREGIRTEKTKYGLAAPLAFVLP 130

Query: 206 --KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLI 260
                   I     +  G + V D  +       G      +LD CA  GGK    A  +
Sbjct: 131 DGPPKNGGIFGCDVWRRGYFEVMDEGSQCIANAVGAREGERILDACAGNGGKTLAMAANM 190

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320
               ++ A D+ KRRL  L+ N  R  + A  +   ++ D    + FDA+LVDAPCSS G
Sbjct: 191 NGHGEICAFDIDKRRLLHLKANAARARVDAL-VTTTESLDELASESFDAILVDAPCSSVG 249

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            +RR P +  + D  D  + A  Q ++L      +KPGG +V++ CS+   ++++V +  
Sbjct: 250 ALRRTPSLRHSYD--DPRELAKVQAEILDGVARLLKPGGRLVYATCSVLSIENQDVAEAF 307

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            R                   + ++  SP   +R              G DGFF     R
Sbjct: 308 ERKHDDFA---------PWPFEDSVLTSPAVELR---SHERLFLPHVHGTDGFFIARFVR 355

Query: 441 LI 442
             
Sbjct: 356 RT 357


>gi|294658941|ref|XP_002770870.1| DEHA2F21384p [Debaryomyces hansenii CBS767]
 gi|202953499|emb|CAR66389.1| DEHA2F21384p [Debaryomyces hansenii]
          Length = 707

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 60/270 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     + +V D+CAAPG KTAQ++ +             V A D  
Sbjct: 150 ISRQEAVSMIPPLLMDIKPHHAVFDMCAAPGSKTAQMVEALHADDDNKLATGFVLANDSD 209

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             FD +L D PCS  GT+R+
Sbjct: 210 YKRSHMLVHQVKRLNSPNFMVVNHDAQLFPRIRLNNASEYLKFDRILCDVPCSGDGTMRK 269

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  ++ GG +V+S CSL   ++E VV   LR  
Sbjct: 270 NVNVWKDFTVGNALGLHSLQINILNRGLQLLRKGGRLVYSTCSLSPVENEAVVAAALRKW 329

Query: 385 PIPVELVPLNSA----------------------------------YWKSIDMAMALSPE 410
              ++LV  ++                                   +  + + A   S E
Sbjct: 330 GNQIKLVNCDNELPGLVRRNGVSDWKVYGKDMQVREKGAEDVADTVFPPTQEEADTFSLE 389

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             IR+ P +            GFF   L +
Sbjct: 390 NCIRVYPHLQ--------NTGGFFIAVLEK 411


>gi|145487526|ref|XP_001429768.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396862|emb|CAK62370.1| unnamed protein product [Paramecium tetraurelia]
          Length = 383

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 152/438 (34%), Gaps = 80/438 (18%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           +++    +R      L   Y ++    L   ++ ++       +R     D +L      
Sbjct: 14  IMTNFDVQRGPFDSFLREYYKNNK--TLGPSERSIISQTAFDLVRN----DLLLSHFTK- 66

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
                      L  +S  +    ++   DY +++              +  + +  ++R 
Sbjct: 67  ---DVDRKCDLLSHISNYE-NDQNIPLQDYILIN--------------YKGIFDVAVQRC 108

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188
                                 + + + YG++R      A  +   + + +       E 
Sbjct: 109 KNTFYFR-------------LFQLVSDQYGQKRAYEFFMALNTKAPLTIRINPIKTTREK 155

Query: 189 WAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
              ++N +        P G I  KE   ++     F EG++ +QD ++ I         N
Sbjct: 156 LMQEMNHLYFKKTLTSPYGLIISKENNVNLSDTDQFKEGLFEIQDEASQICALRVQCRPN 215

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
             VLD CA  GGKT            ++++  R E L     RL          +   + 
Sbjct: 216 DKVLDYCAGSGGKTLAFAHQMEGKGVIEINDTRSEALSKAKIRLRRAGIM----NYSFFT 271

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            K  +D +L+D PC+  GT+RR+PD  +      +      Q+ +  Q I ++K  G++V
Sbjct: 272 KKFKYDWILLDVPCTGLGTLRRNPDSKYRFSQGRLDDLIKLQQDIFDQAIRYLKQDGVIV 331

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS  K +++  V+   +   + V                             +   +
Sbjct: 332 YTTCSFLKDENQNQVKHFCKKYNLSVVD---------------------------NDYFQ 364

Query: 423 IDGVSSGMDGFFAVALRR 440
                 GMDGFF+++L++
Sbjct: 365 SLPEKGGMDGFFSISLKK 382


>gi|118586909|ref|ZP_01544342.1| tRNA/rRNA cytosine-C5-methylase [Oenococcus oeni ATCC BAA-1163]
 gi|118432636|gb|EAV39369.1| tRNA/rRNA cytosine-C5-methylase [Oenococcus oeni ATCC BAA-1163]
          Length = 458

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 120/303 (39%), Gaps = 20/303 (6%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
           +P+ F  +     GKE    ++   +       L    D+  ++       +P      +
Sbjct: 4   LPKEFIAKYRRLLGKEADDFLASFQMEADNGFRLNPLKDLRQFSSLKRQTPIPWNRENGR 63

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263
                      F  GV + Q+ SA    Q+        +LDL AAPGGK+ Q    + + 
Sbjct: 64  YGKIF-GESTAFLSGVAYSQEPSAQFVAQVVDAQPGEKILDLAAAPGGKSTQIAADMNNQ 122

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGT 321
             + A ++S  R + L  N++R  +    +     D      +  FD +L+DAPCS  G 
Sbjct: 123 GLLMANEISFSRAKILSENIERSGITNCIVTNHRPDELAEHFENYFDKILLDAPCSGEGM 182

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R+ P  +    +D   + A  Q+++L   +S ++P G +++S C+   ++ E++V  +L
Sbjct: 183 FRKDPQAIKYWHSDYSSECANRQKEILKSVLSMLRPNGQLIYSTCTFAPEEDEQIVAWLL 242

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVA 437
            +    + L+ +              +    +    R+ P+ ++          G F   
Sbjct: 243 DNY-SELSLLKIRKKDGIEDGRPQWANGNRELKNTARLWPNKIKGE--------GHFVAR 293

Query: 438 LRR 440
           L +
Sbjct: 294 LIK 296


>gi|255099659|ref|ZP_05328636.1| putative methylase [Clostridium difficile QCD-63q42]
          Length = 436

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 33/259 (12%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            LN +     G    +  +     P    G +++Q+ SA   +          VLD+CAA
Sbjct: 54  DLNQIPWAEEGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAA 113

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--DYCPKKL 306
           PGGK+      +     + + +++  R++ L  NL+R       I   D+          
Sbjct: 114 PGGKSTYILSKLNDTGLLVSNEINASRIKALGENLERFGARNCIITNTDSNSLRKTFNGY 173

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD V++DAPCS  G  R+    +       +V+    Q++++  G   +K  GI+++S C
Sbjct: 174 FDKVIIDAPCSGQGMFRKDEVAISDWSYAKVVECQSIQKEIIRDGYKMLKKDGILIYSTC 233

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +  ++++E V+ + +   P   EL+ +                    R+ P  ++     
Sbjct: 234 TFSREENEHVINEFISEYP-HAELIEME-------------------RLWPHKIKGE--- 270

Query: 427 SSGMDGFFAVALRRLIQPK 445
                G F   +++L + +
Sbjct: 271 -----GHFVAKIKKLEEEE 284


>gi|126698132|ref|YP_001087029.1| putative methylase [Clostridium difficile 630]
 gi|254974153|ref|ZP_05270625.1| putative methylase [Clostridium difficile QCD-66c26]
 gi|255091554|ref|ZP_05321032.1| putative methylase [Clostridium difficile CIP 107932]
 gi|255515971|ref|ZP_05383647.1| putative methylase [Clostridium difficile QCD-97b34]
 gi|255649062|ref|ZP_05395964.1| putative methylase [Clostridium difficile QCD-37x79]
 gi|260682253|ref|YP_003213538.1| putative methylase [Clostridium difficile CD196]
 gi|260685852|ref|YP_003216985.1| putative methylase [Clostridium difficile R20291]
 gi|306519175|ref|ZP_07405522.1| putative methylase [Clostridium difficile QCD-32g58]
 gi|115249569|emb|CAJ67386.1| putative RNA methyltransferase [Clostridium difficile]
 gi|260208416|emb|CBA60960.1| putative methylase [Clostridium difficile CD196]
 gi|260211868|emb|CBE02298.1| putative methylase [Clostridium difficile R20291]
          Length = 436

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 33/259 (12%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            LN +     G    +  +     P    G +++Q+ SA   +          VLD+CAA
Sbjct: 54  DLNQIPWAEEGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAA 113

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--DYCPKKL 306
           PGGK+      +     + + +++  R++ L  NL+R       I   D+          
Sbjct: 114 PGGKSTYILSKLNDTGLLVSNEINASRIKALGENLERFGARNCIITNTDSNSLRKTFNGY 173

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD V++DAPCS  G  R+    +       +V+    Q++++  G   +K  GI+++S C
Sbjct: 174 FDKVIIDAPCSGQGMFRKDEVAISDWSYAKVVECQSIQKEIIRDGYKMLKKDGILIYSTC 233

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +  ++++E V+ + +   P   EL+ +                    R+ P  ++     
Sbjct: 234 TFSREENEHVINEFISEYP-HAELIEME-------------------RLWPHKIKGE--- 270

Query: 427 SSGMDGFFAVALRRLIQPK 445
                G F   +++L + +
Sbjct: 271 -----GHFVAKIKKLEEEE 284


>gi|70606519|ref|YP_255389.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639]
 gi|68567167|gb|AAY80096.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639]
          Length = 334

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 127/341 (37%), Gaps = 15/341 (4%)

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
             E  K+  +    +    ++        ++ +              E            
Sbjct: 1   MKEYIKKYDKLFSLSPSYQAVRLSNKYGFLDYMVERYIHMFDSLEDAESFMRSCTVPLEE 60

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
           +I    +      +  + + + +  +    +     +  K    S+ +   +  G +++Q
Sbjct: 61  SIRCNDLVTTCSTMEYRLEEKNFELEKVQWLPHGYRVIKKPNKPSLGATVEYLNGYYYIQ 120

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
             ++ +P  +       +VLD+ AAPGGKT QL   + +   + A + S+RR   L  N+
Sbjct: 121 GLASMVPAYVLNPHEEDTVLDMAAAPGGKTTQLAQLMKNKGLIIATEKSRRRARSLISNI 180

Query: 284 DRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           +R+H     +I  DA      +  F  +L+DAPCS  G I +  +        D+   + 
Sbjct: 181 NRMHARNIILIRSDASTLSKTRIKFSKILLDAPCSGEGIIFKDTERRKKTSLSDLKNFSL 240

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVELVPLNSAYWK 399
            Q  LL  G   +   GI+V+S CS+  ++ E VV   +       I +   P +    +
Sbjct: 241 TQMGLLTIGYDLLDKNGILVYSTCSIAPEEDELVVNYGIEELGFRAIKISGYPADKGISE 300

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +  +      IR  P           G +GFF  AL++
Sbjct: 301 FRGVKFSHDVNNCIRFYPH--------EHGTEGFFVCALQK 333


>gi|300711849|ref|YP_003737663.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
 gi|299125532|gb|ADJ15871.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
          Length = 302

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 104/265 (39%), Gaps = 15/265 (5%)

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                 A  +           L+       +   +  G    Q+  +S+P  +       
Sbjct: 41  TKRALEAEDVGYRDRDWNPTVLELDTNKPGNTWPYFHGWIHGQEEVSSLPATVLSPDPGE 100

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLD CAAPGGKTAQ+   +     V A D +  RL  LR N +RL L    +   DA +
Sbjct: 101 RVLDACAAPGGKTAQIAALMDDTGLVVANDNNLGRLSALRFNAERLGLTNVAVTRQDARN 160

Query: 301 YCPKKL----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           +  K +    FD VLVDAPCS  G IR+ PD L       +   +  Q+ +L + I   +
Sbjct: 161 FSLKPVGLDAFDRVLVDAPCSCEGIIRKRPDTLDEWSLSHVEGVSGVQKGILKRAIQATR 220

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG+VV+S C+   +++E V+   L      V        +   +D    ++     R  
Sbjct: 221 EGGVVVYSTCTFAPEENEAVLDHALEEEDCRVV------EFETPLDSRPGVTEWQGERYH 274

Query: 417 PD--MLEKIDGVSSGMDGFFAVALR 439
                  +     +   GFF   L 
Sbjct: 275 ESVAKARRYYPHHNDTGGFFCAKLE 299


>gi|315180185|gb|ADT87099.1| Ribosomal RNA small subunit methyltransferase F (rRNA
           (cytosine-C(5)-)-methyltransferase rsmF) (16S rRNA
           m5C1407 methyltransferase) [Vibrio furnissii NCTC 11218]
          Length = 474

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 120/258 (46%), Gaps = 21/258 (8%)

Query: 193 LNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV---LD 247
           L AV     G  +   E    + +      G++++Q+AS+ +PV       +      LD
Sbjct: 63  LEAVPWCDTGFWIDADESDVPLGNTAEHMAGLFYIQEASSMMPVSALFMDASERFDAVLD 122

Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--C 302
           + AAPG KT Q+   + +   + A + S  R++ L  N++R  +    +   D   +   
Sbjct: 123 MAAAPGSKTTQIAALMNNAGILVANEFSASRVKVLHANIERCGIRNTALSNFDGRVFGGW 182

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FDAVL+DAPCS  GTIR+ PD +       ++  A  Q+ L+      +K GG++V
Sbjct: 183 LPEQFDAVLIDAPCSGEGTIRKDPDAMKNWSKASVLSIADTQKDLIESAFQALKVGGVLV 242

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C+L ++++ + V   L+++             ++  D A  ++ EG++ I P + + 
Sbjct: 243 YSTCTLSREEN-QQVCWHLKNTYGDAVSFERLDNLFEHADQA--ITEEGFLHIFPQVYDC 299

Query: 423 IDGVSSGMDGFFAVALRR 440
                    GFF   +R+
Sbjct: 300 E--------GFFVARIRK 309


>gi|256071291|ref|XP_002571974.1| nucleolar protein nol1/nop2 [Schistosoma mansoni]
 gi|238657124|emb|CAZ28204.1| nucleolar protein nol1/nop2, putative [Schistosoma mansoni]
          Length = 434

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 115/265 (43%), Gaps = 14/265 (5%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIETWAHKLNA----- 195
                  ++   +L + + KE V  +    +         T+K      A  L       
Sbjct: 162 CSRYSYNQFLMVKLLDLFPKEIVEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNL 221

Query: 196 ---VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
                    G+ +      + + P +  G + +Q AS+ +PV          +LDLCAAP
Sbjct: 222 DPLEPWSKVGLVVYSSQVPLGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAP 281

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FD 308
           GGKT  +   + +   + A +++  R + L  N  R+ +    I   +   +      FD
Sbjct: 282 GGKTTYIAQLMKNTGTIFANEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKIMSNFD 341

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VLVDAPCS TG I + P V  T++ D+I K    Q++LL+  I   K GG VV+S CS+
Sbjct: 342 RVLVDAPCSGTGIIAKDPSVKTTKNNDEIQKCVELQKRLLVAAIDSCKVGGYVVYSTCSI 401

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPL 393
             +++E VV   LR   + +E   L
Sbjct: 402 LVEENENVVNFALRRRKVRLEETKL 426


>gi|291522210|emb|CBK80503.1| tRNA and rRNA cytosine-C5-methylases [Coprococcus catus GD/7]
          Length = 467

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 32/314 (10%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAV----MLPT 200
             PE F+ER++   G E       +   P +  + +           +   V    +   
Sbjct: 3   QFPEKFQERMQQMLGDEEYAEFLKSYDLPFHNGLRINTWKTKPQELLQRMGVDLKQVPWN 62

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
                 E  +     P +  G++++Q+ASA +P +L        +LD+CAAPGGK+  + 
Sbjct: 63  ETGFYLENKKQFSKHPYYQGGLYYIQEASAMLPAKLVNAQPGEKILDMCAAPGGKSTAIG 122

Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAP 315
                   + + D+SK R + L  NL+   +    ++            + FD VL+DAP
Sbjct: 123 AALKGEGLLISNDISKSRAKALLRNLEGFGIINSIVVSEYPEKLSRYFPEFFDKVLIDAP 182

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G   + P +  +       +    Q ++L  G   V+PGG +++S C+   ++ E 
Sbjct: 183 CSGEGMFHKEPSMTESWLRMGPEEYHKLQMEILTYGAKMVRPGGKLIYSTCTFSPEEDEG 242

Query: 376 VVQKVLRSSPIP--VELVP---------LNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            +   L+  P    VE+           ++  + +  D    L+     R+ P  LE   
Sbjct: 243 SIAWFLQEHPDFHLVEVDDDKDLCGCHCIDHGHPEWADGNPELTK--TRRLWPHHLEGE- 299

Query: 425 GVSSGMDGFFAVAL 438
                  G FA  L
Sbjct: 300 -------GHFAAVL 306


>gi|89898746|ref|YP_515856.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89332118|dbj|BAE81711.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 371

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 139/426 (32%), Gaps = 82/426 (19%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
             +  +  +       R L  +D+  + A +   LR    ++ ++               
Sbjct: 19  TPIGEVNRVALYFKQHRSLGSKDRQWMSARIFAILRHRRLLETLI--------------- 63

Query: 83  QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142
              LR            D   V      AK ++               +   +       
Sbjct: 64  ---LR------------DNQEVSPETLVAKVEEG-------------ALDDIEQYQDLPW 95

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
                I +   E L   YG+ER   ++   +      + V     +       +  P   
Sbjct: 96  PVRYSISDDLAECLIEDYGQERAKELAGFFLKEAPCAIRVNTRRTSVEDLRKRLQYPCEP 155

Query: 203 IRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
             +      +    +     F  G++ +QD S+              +LD CA  GGK+ 
Sbjct: 156 GSVPGSLRFDKRYPLQHSAAFHRGLFEIQDESSQKVTLDIPVSKKDRILDFCAGAGGKSL 215

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
                   V   D  K  LE+ +  L R       I E        K  F  V+VDAPC+
Sbjct: 216 IFADRAHHVVLHDSRKDVLEEAKQRLRRAGARNFSIGEQYLR----KNSFSIVVVDAPCT 271

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
            +G  RRHP+         ++  +  QRK+L   + +VKPGG +V+  CSL  +++E+ V
Sbjct: 272 GSGVFRRHPEKKSQFSKKLLLTFSQVQRKILRDAVRYVKPGGKLVYITCSLLSEENEKQV 331

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
              ++           +  + +   M  ALSPEG                   DGFF+  
Sbjct: 332 -AFMQ-----------SLGWEEERCMHTALSPEGG------------------DGFFSAR 361

Query: 438 LRRLIQ 443
             R  +
Sbjct: 362 FVRKGR 367


>gi|260768468|ref|ZP_05877402.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
           CIP 102972]
 gi|260616498|gb|EEX41683.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
           CIP 102972]
          Length = 474

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 120/274 (43%), Gaps = 22/274 (8%)

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPV 234
           I +            +   +         +  E    + +      G++++Q+AS+ +PV
Sbjct: 47  ISVEAFLSRAKEKGWMLEAVPWCDTGFWIDADESDVPLGNTAEHMAGLFYIQEASSMMPV 106

Query: 235 QLFGTLNNLSV---LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
                  +      LD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +
Sbjct: 107 SALFMDASERFDAVLDMAAAPGSKTTQIAALMNNAGILVANEFSASRVKVLHANIERCGI 166

Query: 289 YAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
               +   D   +     + FDAVL+DAPCS  GTIR+ PD +       ++  A  Q+ 
Sbjct: 167 RNTALSNFDGRVFGGWLPEQFDAVLIDAPCSGEGTIRKDPDAMKNWSKASVLSIADTQKD 226

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           L+      +K GG++V+S C+L ++++ + V   L+++             ++  D A  
Sbjct: 227 LIESAFQALKVGGVLVYSTCTLSREEN-QQVCWHLKNTYGDAVSFERLDNLFEHADQA-- 283

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++ EG++ I P + +          GFF   +R+
Sbjct: 284 ITEEGFLHIFPQVYDCE--------GFFVARIRK 309


>gi|256850375|ref|ZP_05555803.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus
           MV-1A-US]
 gi|262046477|ref|ZP_06019439.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus
           MV-3A-US]
 gi|312978159|ref|ZP_07789903.1| NOL1/NOP2/sun family protein [Lactobacillus crispatus CTV-05]
 gi|256712772|gb|EEU27765.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus
           MV-1A-US]
 gi|260573348|gb|EEX29906.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus
           MV-3A-US]
 gi|310894877|gb|EFQ43947.1| NOL1/NOP2/sun family protein [Lactobacillus crispatus CTV-05]
          Length = 457

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 24/310 (7%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVMLPTGGIRL 205
            +P  FK + E   G ++   +  A          +        +++L   +        
Sbjct: 3   NLPNEFKTKYEKLLGTKKAQELFAAMNEESKKAFRINTLKPTKVSYELTDSVPQINSAYY 62

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
            E+       P +  G  + QD +A  P  + G      VLDLCAAPGGK     + +  
Sbjct: 63  GEVSG---EDPEWVSGSVYSQDPAAMFPAAISGVRPGERVLDLCAAPGGKITALGEQLKG 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTG 320
              + A ++S  R++ LR N++R  +    I         P     FD +LVDAPCS  G
Sbjct: 120 EGLLVANEISATRVKALRENIERWGISNALITNESPEKLVPIFSEFFDVILVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++P+ +     D ++     Q+++L + +  ++PGG +++S C+   ++ E++V  +
Sbjct: 180 MFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTFAPEEDEQIVSWL 239

Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            +          ++   ++    +  D    L+    +R  P                F 
Sbjct: 240 NKEYGFTILDTGIQTNKIDVGQPEWADGNPDLTK--TLRFWPQDGIGEGQ--------FV 289

Query: 436 VALRRLIQPK 445
             L+++ + +
Sbjct: 290 AVLQKVGKAR 299


>gi|221484704|gb|EEE22998.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 396

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 130/434 (29%), Gaps = 92/434 (21%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83
            L   +   +       ++  D++ + + +   +++   +D +                 
Sbjct: 35  PLDLFVRHYFKCHK--SVNSADKLFITSHLYQIIKWKGLLDFL-----------TPPPAA 81

Query: 84  QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143
              R+                                      I  R             
Sbjct: 82  WSSRIRTY----------------------------------FISDRWKLHSTNQRLPPH 107

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPT 200
                PE    RLE   G  + + + +         L V  +    E     L    +  
Sbjct: 108 LRCSFPEPLFARLEAALGTVKAIQVCNILNEDPPTFLRVNSNKITRERLYKFLVNKGVLV 167

Query: 201 GGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                     +    + +  LP F  G + +QD ++ +            VLD CA  GG
Sbjct: 168 EKCANSPFGLVLPQRQKLGDLPEFKSGFFDIQDEASQLVAFKLQVEPGQKVLDYCAGSGG 227

Query: 255 KTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLF 307
           KT        +  ++   D  +  L + +  L R  +            D      +   
Sbjct: 228 KTLAFGPLLGNTGRLYLHDTREHMLLEAKKRLKRAGIPNYQLLFPHATPDHVFKKLRGQM 287

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG-GIVVFSNC 366
           D VL D PC++TGT+RR+P++ W    D +      QR++    + ++KP  G +++S  
Sbjct: 288 DWVLCDVPCTATGTLRRNPELKWKYSDDKLFDLVALQREIFASALIYMKPNKGRILYSTS 347

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           S+  +++   V+   +   + +   P ++                               
Sbjct: 348 SILDEENVHQVKFFCQQHGLVLSEAPFHA----------------------------LPQ 379

Query: 427 SSGMDGFFAVALRR 440
           S GMDGFF   L +
Sbjct: 380 SKGMDGFFCAILEK 393


>gi|295693043|ref|YP_003601653.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus crispatus ST1]
 gi|295031149|emb|CBL50628.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus ST1]
          Length = 457

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 125/310 (40%), Gaps = 24/310 (7%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVMLPTGGIRL 205
            +P  FK + E   G ++   +  A          +        +++L   +        
Sbjct: 3   NLPNEFKTKYEKLLGTKKAQELFAAMNEESKKAFRINTLKPTKVSYELTDSVPQINSAYY 62

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
            E+       P +  G  + QD +A  P  + G      VLDLCAAPGGKT    + +  
Sbjct: 63  GEVSG---EDPEWVSGSVYSQDPAAMFPAAISGVRPGERVLDLCAAPGGKTTALGEQLKG 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTG 320
              + A ++S  R++ LR N++R  +    I         P     FD +LVDAPCS  G
Sbjct: 120 EGLLVANEISATRVKALRENIERWGISNALITNESPEKLVPIFSEFFDVILVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++P+ +     D ++     Q+++L + +  ++PGG +++S C+   ++ E++V  +
Sbjct: 180 MFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTFAPEEDEQIVSWL 239

Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            +          ++   ++    +  D    L+    +R  P                F 
Sbjct: 240 NKEYGFTILDTGIQANKIDVGQPEWADGNPDLTK--TLRFWPQDGIGEGQ--------FV 289

Query: 436 VALRRLIQPK 445
             L+++ + +
Sbjct: 290 AVLQKVGKAR 299


>gi|256843268|ref|ZP_05548756.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus
           125-2-CHN]
 gi|293380932|ref|ZP_06626966.1| NOL1/NOP2/sun family protein [Lactobacillus crispatus 214-1]
 gi|256614688|gb|EEU19889.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus
           125-2-CHN]
 gi|290922507|gb|EFD99475.1| NOL1/NOP2/sun family protein [Lactobacillus crispatus 214-1]
          Length = 457

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 125/310 (40%), Gaps = 24/310 (7%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVMLPTGGIRL 205
            +P  FK + E   G ++   +  A          +        +++L   +        
Sbjct: 3   NLPNEFKTKYEKLLGTKKAQELFAAMNEESKKAFRINTLKPTKVSYELTDSVPQINSAYY 62

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
            E+       P +  G  + QD +A  P  + G      VLDLCAAPGGKT    + +  
Sbjct: 63  GEVSG---EDPEWVSGSVYSQDPAAMFPAAISGVRPGERVLDLCAAPGGKTTALGEQLKG 119

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTG 320
              + A ++S  R++ LR N++R  +    I         P     FD +LVDAPCS  G
Sbjct: 120 EGLLVANEISATRVKALRENIERWGISNALITNESPEKLVPIFSEFFDVILVDAPCSGEG 179

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++P+ +     D ++     Q+++L + +  ++PGG +++S C+   ++ E++V  +
Sbjct: 180 MFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTFAPEEDEQIVSWL 239

Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            +          ++   ++    +  D    L+    +R  P                F 
Sbjct: 240 NKEYGFTILDTGIQTNKIDVGQPEWADGNPDLTK--TLRFWPQDGIGEGQ--------FV 289

Query: 436 VALRRLIQPK 445
             L+++ + +
Sbjct: 290 AVLQKVGKAR 299


>gi|167751849|ref|ZP_02423976.1| hypothetical protein ALIPUT_00091 [Alistipes putredinis DSM 17216]
 gi|167660090|gb|EDS04220.1| hypothetical protein ALIPUT_00091 [Alistipes putredinis DSM 17216]
          Length = 442

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 15/291 (5%)

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
               G E   A+ +A   P    + +            AV     G  L E P S    P
Sbjct: 1   MAELGPEEGRALCEALEGPAPTSVRLHPQRPCRWSGAEAVPWSPAGRYLTERP-SFTLDP 59

Query: 217 GFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDV 271
            F  G ++VQ+AS+     +     +    +LDLCAAPGGKT        S   V A +V
Sbjct: 60  AFHAGAYYVQEASSQFLAHVLAGEEVAGKRILDLCAAPGGKTTLYASLAGSDGLVVANEV 119

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           +++R   L  N+ +  L    +   +       +  FD V VDAPCS  G  R+ P+   
Sbjct: 120 NRQRAAVLADNVRKWGLGNVAVTVNEPAQIAVLEGWFDIVAVDAPCSGEGMFRKIPEARD 179

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
               +++   A  Q ++L +    ++PGG++++S C+ ++ ++E  ++ +L  +   +  
Sbjct: 180 EWSENNVKICAVRQAEILREAWKTLRPGGLLIYSTCTFNRLENEGSLEGLLAEAGEEIVE 239

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                       +   + P    R  P              GFFA   R++
Sbjct: 240 STAFDCPPAWGVVCGRVGPFRTFRFYPHRTRGE--------GFFAAVARKV 282


>gi|327459833|gb|EGF06173.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1057]
          Length = 434

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+         
Sbjct: 1   MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTNWSFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPTKGMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     +      +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVVVTNESAERLVQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|296449347|ref|ZP_06891129.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP08]
 gi|296880719|ref|ZP_06904671.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP07]
 gi|296261817|gb|EFH08630.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP08]
 gi|296428292|gb|EFH14187.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP07]
          Length = 436

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 33/259 (12%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            LN +     G    +  +     P    G +++Q+ SA   +          VLD+CAA
Sbjct: 54  DLNQISWAEEGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAA 113

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--DYCPKKL 306
           PGGK+      +     + + +++  R++ L  NL+R       I   D+          
Sbjct: 114 PGGKSTYILSKLNDTGLLVSNEINVSRIKALGENLERFGARNCIITNTDSNSLRKTFNGY 173

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD V++DAPCS  G  R+    +       +V+    Q++++  G   +K  GI+++S C
Sbjct: 174 FDKVIIDAPCSGQGMFRKDEVAISDWSHAKVVECQSIQKEIIRDGYKMLKKDGILIYSTC 233

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +  ++++E V+ + +   P   EL+ +                    R+ P  ++     
Sbjct: 234 TFSREENEHVINEFISEYP-HAELIEME-------------------RLWPHKIKGE--- 270

Query: 427 SSGMDGFFAVALRRLIQPK 445
                G F   +++L + +
Sbjct: 271 -----GHFVAKIKKLEEEE 284


>gi|324990875|gb|EGC22810.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK353]
          Length = 434

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MDFPKGFKEK-YEQILGAEAADFFTTFDEEPISAFRSNPLKEGQQNFSDAIPHSDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKRMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     +      +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERYGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E+VV  +
Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLDKDGRLVYSTCTWAPEENEDVVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|291279365|ref|YP_003496200.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family [Deferribacter
           desulfuricans SSM1]
 gi|290754067|dbj|BAI80444.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family
           [Deferribacter desulfuricans SSM1]
          Length = 456

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 15/239 (6%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQL---FGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
            +     F  G  ++Q+ S+ +PV+       ++   +LD+ +APGGKT    + +    
Sbjct: 85  RLSDTISFFTGGIYIQNPSSLLPVKFLIENIDVDEPVILDMASAPGGKTTALSEFLDRRG 144

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTI 322
            + A + SK RL+ L  N+++   Y    +  D         ++FDAVL+DAPCS+   I
Sbjct: 145 LIVANEPSKSRLKDLNFNIEKNFAYNVATVSYDGRVLHKYLSEVFDAVLLDAPCSNENKI 204

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
                VL       + + A  QR+L+      ++ GGI+++S C+   +++E++V+ +L 
Sbjct: 205 FHDNAVLNNWSETLVERLAKLQRELIESACFTLRKGGILIYSTCTFSIEENEQIVEYLLS 264

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                VEL+ LN   +       +   +  +RI P           G DGFF    R+ 
Sbjct: 265 EY--DVELIDLNKGDFDYGLSGNSNIDKKVVRILPHSGRYP-----GFDGFFVAGFRKK 316


>gi|139439007|ref|ZP_01772467.1| Hypothetical protein COLAER_01473 [Collinsella aerofaciens ATCC
           25986]
 gi|133775718|gb|EBA39538.1| Hypothetical protein COLAER_01473 [Collinsella aerofaciens ATCC
           25986]
          Length = 367

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 32/256 (12%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
            +  L  + +G  ++Q  S+ +P  + G      +LD+CAAPGGKT Q+     S A +T
Sbjct: 116 DLWDLDIYRDGKIYLQSLSSMMPPLVLGAQAGEDILDMCAAPGGKTTQIAALTQSQAHLT 175

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HP 326
           A ++S  R EKL  NL R       ++ +DA +      FD +L+DAPC+ TGT+   + 
Sbjct: 176 ACEMSIPRAEKLESNLHRQGAKNVPVMRIDARELDEFFRFDRILLDAPCTGTGTVISGNE 235

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             L       + K A  QR LL + +  +KPGG +V+S CS+  Q++E+ +Q+ L    +
Sbjct: 236 KSLRGLTEQLLGKCARSQRALLDRAMGALKPGGTLVYSTCSIMPQENEDALQEALDKH-M 294

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID---------------------- 424
             EL+PL+    +S       + E      P +                           
Sbjct: 295 DCELIPLDGTPSESEARRAQDAGEE-----PHIECNALTEAIAAGHVSAIANGMPGTLTI 349

Query: 425 GVSSGMDGFFAVALRR 440
             S   +GF+   +R+
Sbjct: 350 PPSRDFEGFYIALIRK 365


>gi|171779499|ref|ZP_02920463.1| hypothetical protein STRINF_01344 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282116|gb|EDT47547.1| hypothetical protein STRINF_01344 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 436

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 26/252 (10%)

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +         G+ + Q+ +A +  Q+     ++ VLDL AAPGGK+      + 
Sbjct: 55  WGHYGKVSGKSAEHVSGLVYSQEPAAQMVAQVAAPGEHMRVLDLAAAPGGKSTHLLSYMN 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSST 319
           +   + + ++S +R + L  N++R       +     D      K+ FD ++ D PCS  
Sbjct: 115 NTGVLVSNEISNKRSKILVENVERFGAKNVVVTNESSDRLAKVFKEYFDLIVFDGPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ P            + A  Q+++L + +  + PGG +V+S C+   +++E VV  
Sbjct: 175 GMFRKEPQATQYWHEGYPAECASLQKEILEEAMKMLAPGGTLVYSTCTWSPEENEGVVNW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL- 438
           +L      +EL+P+         MA  +      R+ P   +            F   L 
Sbjct: 235 LLSEY-DYLELLPIEKIN----GMAEGIDMPEVARMYPHRFKGEGQ--------FVAKLH 281

Query: 439 ------RRLIQP 444
                  R ++P
Sbjct: 282 DTREPAHRKVKP 293


>gi|160939071|ref|ZP_02086422.1| hypothetical protein CLOBOL_03965 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438034|gb|EDP15794.1| hypothetical protein CLOBOL_03965 [Clostridium bolteae ATCC
           BAA-613]
          Length = 393

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 16/253 (6%)

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            A         L          P +  G++++Q+ SA  P  +   +    VLDLCAAPG
Sbjct: 68  WADNGFYYDGTLDGEVLRPSKHPAYYAGLYYLQEPSAMTPAAMLPVVPGDRVLDLCAAPG 127

Query: 254 GKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFD 308
           GK+ +    +     + + D+S  R   L  NL+        +             + FD
Sbjct: 128 GKSTELASKLKGRGMLVSNDISYSRARALLKNLELAGAANICVTSEAPEKLAGVWPEFFD 187

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +LVDAPCS  G  RR  D++   +          QR++L Q  + ++PGG +++S C+ 
Sbjct: 188 KILVDAPCSGEGMFRRDEDMVKDWNEKGPEYYVPIQRQILSQAAAMLRPGGYMLYSTCTF 247

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
             ++ E  V  VL   P  ++L  L+            L   G +R+ P  L+       
Sbjct: 248 SVEEDEGNVAYVLEEFP-QMQLCCLDLDKVPGACGGFGLP--GCMRLFPHRLKGE----- 299

Query: 429 GMDGFFAVALRRL 441
              G F   +R+ 
Sbjct: 300 ---GHFLALMRKK 309


>gi|23199998|ref|NP_683759.1| putative methyltransferase NSUN5 isoform 1 [Homo sapiens]
 gi|21552754|gb|AAM62310.1|AF412028_1 Williams-Beuren syndrome critical region protein 20 copy A [Homo
           sapiens]
 gi|14165561|gb|AAH08084.1| NOL1/NOP2/Sun domain family, member 5 [Homo sapiens]
 gi|37674386|gb|AAQ96839.1| unknown [Homo sapiens]
 gi|119590101|gb|EAW69695.1| hCG39703, isoform CRA_d [Homo sapiens]
 gi|123990710|gb|ABM83920.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct]
 gi|123999331|gb|ABM87241.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct]
 gi|307684594|dbj|BAJ20337.1| NOP2/Sun domain family, member 5 [synthetic construct]
          Length = 466

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 154/409 (37%), Gaps = 29/409 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  R    S +P + +         + V 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     K   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G   R        T     +
Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +P    L P   
Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           A W    ++     E  +R +P+             GFF   + R+  P
Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVP 428


>gi|197301683|ref|ZP_03166753.1| hypothetical protein RUMLAC_00409 [Ruminococcus lactaris ATCC
           29176]
 gi|197299123|gb|EDY33653.1| hypothetical protein RUMLAC_00409 [Ruminococcus lactaris ATCC
           29176]
          Length = 470

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 109/270 (40%), Gaps = 17/270 (6%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           ++V+  ++     L  V     G             P +  G++++Q+ SA  P      
Sbjct: 51  ISVEDFLKIAPWPLEPVPWIENGFYYDGDHIQPSKHPYYFAGLYYLQEPSAMTPASRLPV 110

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--I 294
                VLD+CAAPGGK  +    +     + A D+S  R + L  NL+   +    +   
Sbjct: 111 EPGDRVLDVCAAPGGKATELGAKLQGTGVLAANDLSSSRAKGLLKNLELFGIGNVLVLSE 170

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E        +  FD +L+DAPCS  G  R+   ++   +       +  Q+ ++ Q    
Sbjct: 171 EPGKLVSYFEGYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGPSFFSKIQKSIITQAAQM 230

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPE 410
           ++PGG++++S C+   +++E+ ++ +L+  P      +E           +        +
Sbjct: 231 LRPGGMLLYSTCTFSPEENEQTIEYLLQEYPEFQICEMEGYEGFVNGMPQVTENRNDELK 290

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +RI P  ++          G F   L++
Sbjct: 291 KTVRIFPHRMKGE--------GHFLALLQK 312


>gi|127512512|ref|YP_001093709.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella loihica
           PV-4]
 gi|167012768|sp|A3QDA2|RSMF_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|126637807|gb|ABO23450.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella loihica
           PV-4]
          Length = 486

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 21/256 (8%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL-----DLCAA 251
               G     +    + +     +G++++Q+AS+ +P +                D+ +A
Sbjct: 65  WCEDGFWVKVDDSVQLGNTVEHIQGLFYIQEASSMLPPKALFPEPIEDATSLTLLDMASA 124

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KL 306
           PG KT Q   ++ +   + A + S  R++ L  N+ R+      +   DA  +     + 
Sbjct: 125 PGSKTTQLAAMMNNQGLLVANEYSSSRVKVLHANVQRMGASNLALTHFDARVFGKYLFES 184

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FDA+L+DAPC   GT+R+ PD L   D  +I   A  QR L+      +KPGG +V+S C
Sbjct: 185 FDAILLDAPCGGEGTVRKDPDALKHWDESEIEAIASVQRDLIESAFLALKPGGSLVYSTC 244

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +L+++++++V   +  +    V+   L   +        A + EG++ + P + +     
Sbjct: 245 TLNRRENQDVCLHLKATYGDAVQFESLAGLFP---GAEKASTSEGFLHVWPQIFDSE--- 298

Query: 427 SSGMDGFFAVALRRLI 442
                GFF   L ++ 
Sbjct: 299 -----GFFIAKLTKIA 309


>gi|221123364|ref|XP_002166177.1| PREDICTED: similar to tRNA (cytosine-5-)-methyltransferase NSUN2
           [Hydra magnipapillata]
          Length = 710

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 108/285 (37%), Gaps = 68/285 (23%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV----------TA 268
             G    Q+A + IP  L     +  VLD+CAAPG KTAQ+I    +            A
Sbjct: 147 ECGAITRQEAVSMIPPMLLDIKPHHLVLDMCAAPGSKTAQIIELMHENQHEALPTGALIA 206

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCS 317
            D   +R   L     RL+     I   DA  +                FD VL D PCS
Sbjct: 207 NDADHKRCYMLTHQAKRLNTPCVIITNHDASIFPKLILKNESGENEALSFDRVLCDVPCS 266

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             GT+R++P +         +     Q ++L++G+  +K GG +V+S CS +  ++E V+
Sbjct: 267 GDGTLRKNPLIWSKWTPHMGIALHQLQIRILIRGLEMLKIGGRLVYSTCSFNPIENEAVL 326

Query: 378 QKVLRSSPIPVELVPLNSA---------------------------------------YW 398
             VL  S   V+LV  ++                                        + 
Sbjct: 327 SHVLLQSKNAVQLVDCSNEIPDLKRKPGLLNWKVFNKQGMELKFFEETGKPSLIKPSMFP 386

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            SI+ A +++ +  +RI P + +          GFF   L +  +
Sbjct: 387 PSIEEAKSINLQFCLRIYPHLQD--------TGGFFVAVLEKKAE 423


>gi|324993131|gb|EGC25051.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK405]
          Length = 434

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 111/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E      +A+     G   
Sbjct: 1   MNFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQDFSDAIPQTDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KMSGKSAEHVTG----LVYSQEPAAQMVAQIAAPTKGMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     D         FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESADRLAQVFSGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQPDATQYWTLDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELTDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|295839959|ref|ZP_06826892.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|295827723|gb|EFG65557.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 296

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 82/228 (35%), Gaps = 18/228 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L     ++  +     RD  L   +V  TLR     D
Sbjct: 28  PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 87

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           AV+   +   L      +  +L +   Q+L   +  +A V   VE A+    +   ++ V
Sbjct: 88  AVIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 146

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169
           N++LRR++R  ++               + ++ +   P W    L +  G  R  +  + 
Sbjct: 147 NAVLRRIARNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVAALWDSLGGPRGGIEDLL 206

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217
            A      + L  +      A  L+A+         +  P ++    G
Sbjct: 207 TADNERPEVTLVARPGRTDAAALLDALGEERALPG-RWSPYAVRLTEG 253


>gi|58337462|ref|YP_194047.1| nucleolar protein [Lactobacillus acidophilus NCFM]
 gi|58254779|gb|AAV43016.1| putative nucleolar protein [Lactobacillus acidophilus NCFM]
          Length = 461

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 119/302 (39%), Gaps = 16/302 (5%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +P  FK + +N  G E+  A+  A          V    ++       +  P   I   
Sbjct: 3   NLPNEFKTKYQNLLGIEKANALFSAMNEASKKAFRVNTLKDSNEKVSYKLNNPVPEIDHA 62

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263
              E     P +  G+ + QD +A  P  +        VLDLCAAPGGKT    + + + 
Sbjct: 63  YYGEINGEDPEWVSGIVYSQDPAAMFPAAISKVKPGAKVLDLCAAPGGKTTALAEKLQNE 122

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321
             + A ++S  R + LR NL+R  +    I         P     FD +LVDAPCS  G 
Sbjct: 123 GVLVANEISNVRAKALRENLERWGVTNALITNESPEKLSPVFPAFFDVILVDAPCSGEGM 182

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R++P+ +     D ++     Q+ +L + I  +KPGG +++S C+   ++ EE+V  ++
Sbjct: 183 FRKNPEAIDYWSQDYVLTCQTRQKDILNEAIKMLKPGGSLIYSTCTFSPEEDEEIVSWLV 242

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                 +    +N           A         +R  P                +A  L
Sbjct: 243 NDHDFSILDPHINDPRISLGHPEWADGNADLTKPLRFWPQDGIGEGQ--------YAAIL 294

Query: 439 RR 440
           ++
Sbjct: 295 QK 296


>gi|167519975|ref|XP_001744327.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777413|gb|EDQ91030.1| predicted protein [Monosiga brevicollis MX1]
          Length = 513

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 106/278 (38%), Gaps = 55/278 (19%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---------SGAKVTAL 269
            +G    Q+A + IP  L     N  VLD+CAAPG KTAQ+I              V A 
Sbjct: 30  EQGNISRQEAVSMIPPLLLDVKPNQRVLDMCAAPGSKTAQIIEGVSATDETVPRGLVVAN 89

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVLVDAPC 316
           D   +R   L     RL      ++  DA  +               K  FD VL D PC
Sbjct: 90  DADSKRCYMLVHQSKRLQSPVFMVVNQDASIFPALFLDSKGGNSRRRKLKFDRVLADVPC 149

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  GT+R++P +    +  D       Q ++L +GI  ++ GG++V+S CSL+  ++E V
Sbjct: 150 SGDGTMRKNPGIWRKWNPFDATGLHPLQYRILRRGIQLLEDGGLIVYSTCSLNPIENEAV 209

Query: 377 VQKVLRSSPIPVELVPLNSAYW---------------------------------KSIDM 403
           V + LR     VELV ++                                     +  D 
Sbjct: 210 VAEALRQHEGLVELVDVSDQLPGLVRDPGMTSWKLMDRDCNWYSSTSEMRPDLRKRFPDS 269

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               + E   +   +   ++   +    GFF   LR+ 
Sbjct: 270 MNPPTAEEAAKFHLERCLRLLPHAQDTGGFFVAVLRKK 307


>gi|21552756|gb|AAM62311.1|AF412029_1 Williams-Beuren syndrome critical region protein 20 [Mus musculus]
          Length = 465

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 150/405 (37%), Gaps = 29/405 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + ++   R      +P + +        ++ + 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGHAYQVPRFVRVNTLKTRPEDAID 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     +   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ +     +  K+ A D   +RL  +   +
Sbjct: 212 DKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLV 271

Query: 284 DRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G + R        T   + +
Sbjct: 272 ARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   + F  ++    +V+S CSL ++++E+VVQ+ L+ +     L P+  
Sbjct: 332 QALAGFQQRALCHALRFPSLQ---RLVYSTCSLCQEENEDVVQEALQHNSGTFRLAPVLP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             W    ++     E  +R +P+             GFF     R
Sbjct: 389 T-WPHRGLSTFPGSEHCLRASPETTL--------TGGFFIAVFER 424


>gi|307206815|gb|EFN84713.1| tRNA (cytosine-5-)-methyltransferase CG6133 [Harpegnathos saltator]
          Length = 745

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 130/409 (31%), Gaps = 71/409 (17%)

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
           Y D+           + +       +   +N++   +         ++   +++     +
Sbjct: 34  YPDIIRENKDFENYYKTQEIVLEDKWDAFINTMRTNLPVAFRITGSKVEAKALLEIIKSD 93

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214
             +            ++      I  ++ F  E  A +L                 + + 
Sbjct: 94  FFKKILNTNLNDDSENSSNEIEPILHSLPFYPEKLAWQLQLTRKDIRRSEAYFRLHNFL- 152

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---------- 264
           +     G    Q+  + +P  +     +  VLD+CAAPG KTAQLI              
Sbjct: 153 IAETDSGNISRQEVVSMVPPLVLDVRPSHKVLDMCAAPGSKTAQLIEMIHADEDNIVPEG 212

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVD 313
            V A DV   R  KL     RL+     I   D+                   FD +L D
Sbjct: 213 FVIANDVDNNRCYKLVHQAKRLNSPNILITNHDSSIMPNFTITKPDGTKDILKFDRILAD 272

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  GT+R++PD+       +       Q +++ +G+  +  GG +V+S CSL+  ++
Sbjct: 273 VPCSGDGTMRKNPDIWCKWSPANGSNLHGIQYRIVKRGLELLTIGGRMVYSTCSLNPIEN 332

Query: 374 EEVVQKVLRSSPIPVELVPL---------------------------------------- 393
           E V+ ++L  +   V+LV                                          
Sbjct: 333 EAVLHRILLETGDSVQLVNCRDLVPGLVCDPGVTHWKPASKDLQHYNAWEEVPEQWQTQI 392

Query: 394 -NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +    + A     E  +RI P              GFF   L ++
Sbjct: 393 RPKMFPPPANEAFKFHLERCMRILPHHQ--------NTGGFFVAVLEKV 433


>gi|210615571|ref|ZP_03290669.1| hypothetical protein CLONEX_02887 [Clostridium nexile DSM 1787]
 gi|210150238|gb|EEA81247.1| hypothetical protein CLONEX_02887 [Clostridium nexile DSM 1787]
          Length = 460

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 19/259 (7%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           ++  V     G             P +  G++++Q+ SA  P           VLD+CAA
Sbjct: 53  EIQPVPWIENGFYYDGEHVQPAKHPYYFAGLFYLQEPSAMTPANRLPIEPGDKVLDVCAA 112

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306
           PGGK  +    +     + A D+S  R + L  N++   +    +   E    +    + 
Sbjct: 113 PGGKATELGAKLCGEGVLVANDISNSRAKGLLKNIEVFGIGNVLVLSEEPGKIEEYFTEY 172

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L+DAPCS  G  R+   ++   +       A  QR ++ Q    +KPGG++++S C
Sbjct: 173 FDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFAKIQRSIVTQAARMLKPGGMMLYSTC 232

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA-----MALSPEGWIRITPDMLE 421
           + D +++E  ++ + +  P   E+  +      +  M         + E  +RI P    
Sbjct: 233 TFDPEENEGTIEYLRQQYP-EFEIKEIRPYEGFAKGMPQVTESKEPAFEKTVRIWP---- 287

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  G +G +   L++
Sbjct: 288 ---YKMHG-EGHYLALLQK 302


>gi|198431505|ref|XP_002123666.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 693

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 125/319 (39%), Gaps = 28/319 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199
                  ++   +  + +    ++A  +A      I +            A  L +  + 
Sbjct: 235 CTYYSYNDFLLSKFMDMFPLTELIAFLEANEVNRPITIRTNTLKTKRRDLAQALISRGVN 294

Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
              +                I + P +  G + +Q AS+ +PV          VLD+CAA
Sbjct: 295 LDPLAKWTKVGLVVYESPVPIGATPEYLAGHYMIQGASSFVPVMALAPQPGERVLDMCAA 354

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LF 307
           PGGKT  +   + +   +   D++K RL+ +  N+ R+ +    I   DA  +      F
Sbjct: 355 PGGKTTYIAQLMKNSGFIFVNDINKARLKAVVGNMHRMGVSNSVISNYDARSFPTIMGNF 414

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363
             VL+DAPCS TG I + P V  ++D  DI K +  Q++L+L  I         GG +V+
Sbjct: 415 SRVLLDAPCSGTGVISKDPSVKTSKDDSDITKCSHLQKELILAAIDSCNAQAQNGGYIVY 474

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421
             CS+  +++EEVV   L+   + +    L                    R  P +    
Sbjct: 475 CTCSVMVEENEEVVNYALKKRNVKLVQTGLEFGV-------EGFCKYRQYRFHPSLKQTR 527

Query: 422 KIDGVSSGMDGFFAVALRR 440
           +    S  MDGFF    ++
Sbjct: 528 RFYPHSHNMDGFFVAKFKK 546


>gi|288905351|ref|YP_003430573.1| RNA methylase, NOL1/NOP2/sun family [Streptococcus gallolyticus
           UCN34]
 gi|306831431|ref|ZP_07464589.1| NOL1/NOP2/sun family protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978338|ref|YP_004288054.1| NOL1/NOP2/sun family putative RNA methylase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732077|emb|CBI13642.1| putative RNA methylase, NOL1/NOP2/sun family [Streptococcus
           gallolyticus UCN34]
 gi|304426216|gb|EFM29330.1| NOL1/NOP2/sun family protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178266|emb|CBZ48310.1| NOL1/NOP2/sun family putative RNA methylase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 436

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 26/252 (10%)

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +    P    G+ + Q+ +A +  Q+     N+ VLDL AAPGGK+      + 
Sbjct: 55  WGHYGKVSGKSPEHVSGLVYSQEPAAQMVAQVAAPQENMRVLDLAAAPGGKSTHLLSYMN 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSST 319
           +   + + ++S +R + L  N++R       +    +       K  FD ++ D PCS  
Sbjct: 115 NTGVLVSNEISSKRSKVLVENIERFGARNVVVTNESSQKLAKVFKYYFDLIVFDGPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ P        D   + A  Q+++L + +  +  GG +V+S C+   +++E VV+ 
Sbjct: 175 GMFRKDPAATQYWHEDYPAECATLQKEILEEAMKMLAIGGTLVYSTCTWSPEENEGVVKW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L      +ELV +         + +        R+ P   +            F   LR
Sbjct: 235 LLDKY-DYLELVDIEKINGMVEGIDLPQVA----RMYPHHFKGEGQ--------FVAKLR 281

Query: 440 -------RLIQP 444
                  R ++P
Sbjct: 282 DTRTAETRSVKP 293


>gi|317473624|ref|ZP_07932913.1| NOL1/NOP2/sun family protein [Anaerostipes sp. 3_2_56FAA]
 gi|316898914|gb|EFV20939.1| NOL1/NOP2/sun family protein [Anaerostipes sp. 3_2_56FAA]
          Length = 422

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 19/243 (7%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
               P +  G++++Q+ SA  P           VLDLCAAPGGK+ +    +     + +
Sbjct: 41  PAKHPFYHAGLYYIQEPSAMAPAAFLPVEPGDKVLDLCAAPGGKSTELGAKLRGEGILVS 100

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHP 326
            D+S  R + L  NL+   +    I+  +  +  P   + FD VLVDAPCS  G  R+  
Sbjct: 101 NDISITRTKALLKNLEMFGISNSVIVSEEPKNLVPVFYEYFDKVLVDAPCSGEGMFRKGS 160

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             +       I      QR+++L  +  +KPGG +++S C+   ++ E++++ +L   P 
Sbjct: 161 SEIKNWAEYGIEPYVKIQREIILDAVKMLKPGGYLLYSTCTFSPEEDEQLIEYLLEQEPG 220

Query: 387 PVELVPLNSAYWKSIDMAMAL-----SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            + L  L          A          +  IR+ P  ++          G F   L++ 
Sbjct: 221 -LSLADLPDCEGFDRGHAEWTVSGLQDVKKCIRLWPHRIKGE--------GHFLALLKKD 271

Query: 442 IQP 444
             P
Sbjct: 272 GSP 274


>gi|325687890|gb|EGD29910.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK72]
          Length = 434

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MNFPKGFKEK-YEQILGAEAAEFFATFDEEPISAFRSNPLKEGQQNFSHAIPQTDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKEMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     +      +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+  D       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQQDATQYWTPDYPAQCAQLQRQILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|324995566|gb|EGC27478.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK678]
          Length = 434

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MNFPKGFKEK-YEQILGAEAAEFFATFDEEPISAFRSNPLKEGQQNFSHAIPQTDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKEMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     +      +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+  D       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQQDATQYWTPDYPAQCAQLQRQILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|268316267|ref|YP_003289986.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus DSM 4252]
 gi|262333801|gb|ACY47598.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus DSM 4252]
          Length = 321

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 132/313 (42%), Gaps = 21/313 (6%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR 204
           +PE F  RL      +R+  +  A   P      V     D +     L A  +    + 
Sbjct: 5   MPEAFLARLRRLVPPDRLPVVEAAFQEPRITAFRVNTLKADRDAVLAALEAEGIQPRPVA 64

Query: 205 LK--------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                     +   +++    +     +VQD ++ +P  +     +  VLDLCAAPG KT
Sbjct: 65  WYADAFQVPPKARAALLESRPYHARWIYVQDLASMLPPLVLAPEPDARVLDLCAAPGSKT 124

Query: 257 ---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVL 311
              A L+    ++ A++V + R  +L+ N+         +   D       +   FD VL
Sbjct: 125 LQLACLMQGRGEIAAVEVVRPRFYRLKANVQAYGAPNVRLYLQDGTRVGRYRPESFDYVL 184

Query: 312 VDAPCSSTGTIR-RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           VDAPCSS G      PD         I + A  Q +LL+  +  ++PGG++V++ C++  
Sbjct: 185 VDAPCSSEGRFHLSDPDTFAYWSPRKIREMARKQYRLLVSAVQSLRPGGVLVYATCTMAP 244

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM-LEKIDGVSSG 429
           +++E V+ ++LR+    + + PL+      +     L         PD+   +    ++ 
Sbjct: 245 EENEAVLDRLLRTFDGVLTVEPLDLPVSNQLP---GLESWEGRSFHPDLRHARRILPTTE 301

Query: 430 MDGFFAVALRRLI 442
           M+GFF   LR+  
Sbjct: 302 MEGFFLCRLRKRA 314


>gi|229496645|ref|ZP_04390359.1| NOL1/NOP2/sun family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316542|gb|EEN82461.1| NOL1/NOP2/sun family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 479

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 24/312 (7%)

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200
               I  +P  F  ++E  + +E    +S    +   + L +            ++  P+
Sbjct: 1   MEDLIPPLPCDFVHQIEQDFPQEVATLLSALDHTEPVVSLRLNIRKCARYKASPSLAYPS 60

Query: 201 GGIRLKELPESIVSLPGFAEG------VWWVQDASASIPVQLFG--TLNNLSVLDLCAAP 252
             I   +    +   P FA        +++VQ+A++    QL        + VLDLCAAP
Sbjct: 61  TPIPWCQEGYRLEGRPFFAHDPLWHAGMYYVQEAASMALAQLAPLIPKRPIEVLDLCAAP 120

Query: 253 GGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFD 308
           GGK+     ++   + + A +   +R + LR NL +       +              FD
Sbjct: 121 GGKSTLLLNILSENSTLVANEPIPKRAQILRENLMKWGYPNTIVTNNYPDQLAATAAKFD 180

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            ++VDAPCS  G  R+ P+         + + A  QR++L    + ++PGG++V+  C+ 
Sbjct: 181 MIVVDAPCSGEGLFRKTPEARLEWSLQSVNECALRQREILDAAWTMLRPGGMLVYCTCTF 240

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
           ++ + EE V+ +LR     +         W  I+    +         P M         
Sbjct: 241 NRHEDEEQVEYLLREYNASLIAAITPPEEWHWIEGKGGV----GWHFLPGMTMGE----- 291

Query: 429 GMDGFFAVALRR 440
              GF+ VA  +
Sbjct: 292 ---GFYFVAFYK 300


>gi|116491124|ref|YP_810668.1| tRNA and rRNA cytosine-C5-methylase [Oenococcus oeni PSU-1]
 gi|116091849|gb|ABJ57003.1| tRNA and rRNA cytosine-C5-methylase [Oenococcus oeni PSU-1]
          Length = 458

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 113/298 (37%), Gaps = 22/298 (7%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
           ++  L             +A        L       +   +         G   K   ES
Sbjct: 12  YRRLLGKEADDFLASFQMEADNGFHLNPLKDLRQFASLKRQAPIPWNRENGRYGKIFGES 71

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
           +     F  GV + Q+ SA    ++        +LDL AAPGGK+ Q    + +   + A
Sbjct: 72  V----AFLSGVAYSQEPSAQFVARVVDAQPGEKILDLAAAPGGKSTQIAADMNNQGLLIA 127

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
            ++S  R + L  N++R  +    +     D      +  FD +L+DAPCS  G  R+ P
Sbjct: 128 NEISFSRAKILSENIERSGITNCIVTNHRPDELAEHFENYFDKILLDAPCSGEGMFRKDP 187

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             +    +D   + A  Q+++L   +S ++P G +++S C+   ++ E++V  +L +   
Sbjct: 188 QAIKYWHSDYSSECANRQKEILKSVLSMLRPNGQLIYSTCTFAPEEDEQIVAWLLDNY-S 246

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALRR 440
            + L+ +                   +    R+ P+ ++          G F   L +
Sbjct: 247 ELSLLKIRKKDGIEDGRPQWADGNRELKNTARLWPNKIKGE--------GHFVARLIK 296


>gi|213418736|ref|ZP_03351802.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 197

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 11/203 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176
             L+N +LR+  R++  LL   A      + P W  +RL+N Y  +    I  +    P+
Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174

Query: 177 YIDLT-VKFDIETWAHKLNAVML 198
           ++ +       + W   L    +
Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGM 197


>gi|296192252|ref|XP_002743979.1| PREDICTED: putative methyltransferase NSUN5 isoform 1 [Callithrix
           jacchus]
          Length = 429

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 156/410 (38%), Gaps = 29/410 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  R    S +P + +         + V 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     K   +      +        +   P +  G   +Q
Sbjct: 153 YFKRKGFSYQG-RASSADDLRALKGKRFLLDPVVPELLAFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLSSMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVLWTRDT--DDI 337
            R  +   ++ E D     P          +L+D  CS +G   R  +    R    + +
Sbjct: 272 ARAGVSCCELAEDDFLAVSPSDPRYSQVRYILLDPSCSGSGMQSRQLEEPGARTPSPERL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +P    L P+  
Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRGALQQNPGAFRLAPVLP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             W    ++     E  +R +P+             GFF   + R+  P+
Sbjct: 389 T-WPLRGLSRFPGAEHCLRASPETTLSG--------GFFVAVIERVEAPR 429


>gi|282851807|ref|ZP_06261170.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri 224-1]
 gi|282557049|gb|EFB62648.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri 224-1]
          Length = 464

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F ++ +N  G+E       +  SP      +      +     ++  P      
Sbjct: 1   MSLPVEFIKKYQNLLGEEESNKFFASIDSPSKKGFRLNPLKNNYQDVQYSLEEPIEFTSD 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
               E       +  G  + QD SA  P           VLDLCAAPGGK+      + +
Sbjct: 61  GYYGEVSGRDSEWTGGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLEN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              + A ++SK R + LR NL+R       +          K    FD +LVDAPCS  G
Sbjct: 121 KGLLVANEISKSRAKDLRENLERWGATNVVVTNESPERLSKKLPHFFDKILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     + ++     Q+++L Q +  +KPGG +V+S C+   ++ EE+V  +
Sbjct: 181 MFRKDPAAMQYWSPEYVLTCQARQKEILTQAMKMLKPGGELVYSTCTYSPEEDEEIVAWL 240

Query: 381 LRSSPIPVELVPLNSAYW-KSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + +  + +E + L         D + +  PE    +R+                  F   
Sbjct: 241 VENYHLKIEPLKLYPGMSMGKADWSKSNLPELKDTVRLWFQNGVGEGQ--------FVAH 292

Query: 438 LR 439
           LR
Sbjct: 293 LR 294


>gi|238853388|ref|ZP_04643767.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri 202-4]
 gi|238833960|gb|EEQ26218.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri 202-4]
          Length = 464

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F ++ +N  G+E       +  SP      +      +     ++  P      
Sbjct: 1   MSLPVEFIKKYQNLLGEEESNKFFASIDSPSKKGFRLNPLKNNYQDVQYSLEEPIEFTSD 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
               E       +  G  + QD SA  P           VLDLCAAPGGK+      + +
Sbjct: 61  GYYGEVSGRDSEWTGGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLEN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              + A ++SK R + LR NL+R       +          K    FD +LVDAPCS  G
Sbjct: 121 KGLLVANEISKSRAKDLRENLERWGATNVVVTNESPERLSKKLPHFFDKILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     + ++     Q+++L Q +  +KPGG +V+S C+   ++ EE+V  +
Sbjct: 181 MFRKDPAAMQYWSPEYVLTCQARQKEILTQAMKMLKPGGELVYSTCTYSPEEDEEIVAWL 240

Query: 381 LRSSPIPVELVPLNSAYW-KSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + +  + +E + L         D + +  PE    +R+                  F   
Sbjct: 241 VENYHLKIEPLKLYPGMSMGKADWSKSNLPELKDTVRLWFQNGVGEGQ--------FVAH 292

Query: 438 LR 439
           LR
Sbjct: 293 LR 294


>gi|315648462|ref|ZP_07901561.1| Fmu (Sun) domain protein [Paenibacillus vortex V453]
 gi|315276156|gb|EFU39502.1| Fmu (Sun) domain protein [Paenibacillus vortex V453]
          Length = 461

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 103/271 (38%), Gaps = 37/271 (13%)

Query: 179 DLTVKFDIETWAHKLNA----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
            L    D +   + +       +         +  E     P  A G++++Q+ SA   V
Sbjct: 41  RLKAVHDADNLKNLIRQFHLTAVPWCDSGYYYDDNERPGKHPYHAAGLYYIQEPSAMSAV 100

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
           +L       ++LDL AAPGGKT+     ++    + + ++   R   L  N++R+ +   
Sbjct: 101 ELLDPQPGETILDLAAAPGGKTSHIASKMMGQGLLVSNEIHPERARILAENVERMGIKNT 160

Query: 292 DIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
            +     D         FD +++DAPCS  G  R+    +     D +   A  Q  ++ 
Sbjct: 161 VVTSAAPDQLSRRFVACFDRIMLDAPCSGEGMFRKDAAAIAEWSHDHVELCASRQWDIVQ 220

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +    +KPGG + +S C+ +K ++EE+V ++L+  P                        
Sbjct: 221 EAYHMLKPGGTLAYSTCTFNKAENEEMVGRILKQYPDMELRE------------------ 262

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               R+ P +            G F   L +
Sbjct: 263 --MKRLWPHLERGE--------GHFVAVLTK 283


>gi|94988690|ref|YP_596791.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94992513|ref|YP_600612.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94542198|gb|ABF32247.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546021|gb|ABF36068.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 436

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 109/301 (36%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F          + +     +          +                      
Sbjct: 1   MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +         G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKLSGKSQEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       +     D         FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +         + A  Q+ +L   ++ +KPGG +++S C+   +++E+VVQ
Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALTMLKPGGELIYSTCTWAPEENEDVVQ 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +         + +  +     R+ P   +            F   L
Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|154146245|ref|NP_663389.2| putative methyltransferase NSUN5 [Mus musculus]
 gi|118573086|sp|Q8K4F6|NSUN5_MOUSE RecName: Full=Putative methyltransferase NSUN5; AltName:
           Full=NOL1/NOP2/Sun domain family member 5; AltName:
           Full=Williams-Beuren syndrome chromosomal region 20A
           protein homolog
 gi|26347971|dbj|BAC37634.1| unnamed protein product [Mus musculus]
 gi|74146333|dbj|BAE28935.1| unnamed protein product [Mus musculus]
 gi|148687420|gb|EDL19367.1| NOL1/NOP2/Sun domain family, member 5 [Mus musculus]
 gi|183396899|gb|AAI65967.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct]
          Length = 465

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 150/405 (37%), Gaps = 29/405 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + ++   R      +P + +        ++ + 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFVRVNTLKTRPEDAID 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     +   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ +     +  K+ A D   +RL  +   +
Sbjct: 212 DKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLV 271

Query: 284 DRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G + R        T   + +
Sbjct: 272 ARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   + F  ++    +V+S CSL ++++E+VVQ+ L+ +     L P+  
Sbjct: 332 QALAGFQQRALCHALRFPSLQ---RLVYSTCSLCQEENEDVVQEALQHNSGTFRLAPVLP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             W    ++     E  +R +P+             GFF     R
Sbjct: 389 T-WPHRGLSTFPGSEHCLRASPETTL--------TGGFFIAVFER 424


>gi|159905923|ref|YP_001549585.1| RNA methylase [Methanococcus maripaludis C6]
 gi|159887416|gb|ABX02353.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus maripaludis C6]
          Length = 275

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 26/264 (9%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTL 240
           E    +L    +      L  +   +       S P +  G +++Q  S+ IP       
Sbjct: 27  EDLKKRLEEKGVELEDTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSISSIIPSVTLNPT 86

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
            + ++LD+CAAPGGKT  L   + +   + A++++K RL+ LR N++R+      +I  +
Sbjct: 87  KDDNLLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTN 146

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A +   K  FD +L+DAPC+         D    +   DI+  A  Q +L    I  +K 
Sbjct: 147 AVNIDKKLRFDKILLDAPCTGNEI----KDCNRVKTKRDILFCAKRQVELFRTAIEVLKD 202

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S CS + ++ E++V+ +L+++   +EL+ L+   +  I+M       G +++ P
Sbjct: 203 GGEMVYSTCSPEIEEDEDIVRYILKNNKN-MELIELSVDDFPGINMIEGEVK-GTLKVIP 260

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                          FF    R++
Sbjct: 261 PNEP-----------FFIAKFRKV 273


>gi|302517945|ref|ZP_07270287.1| RNA-binding Sun protein [Streptomyces sp. SPB78]
 gi|302426840|gb|EFK98655.1| RNA-binding Sun protein [Streptomyces sp. SPB78]
          Length = 476

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 18/228 (7%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64
             R+++   L  V  +      +L     ++  +     RD  L   +V  TLR     D
Sbjct: 66  PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 125

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           A++   +   L      +  +L +   Q+L   +  +A V   VE A+    +   ++ V
Sbjct: 126 AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 184

Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169
           N++LRR+SR  ++               + ++ +   P W    L +  G  R  +  + 
Sbjct: 185 NAVLRRISRNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVSALWDSLGGPRGGIEDLL 244

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217
            A      + L  +         L+A+         +  P ++    G
Sbjct: 245 TADNERPEVTLVARPGRTDAEALLDALGEERALPG-RWSPYAVRLTEG 291


>gi|330508978|ref|YP_004385406.1| NOL1/NOP2/sun family putative RNA methylase [Methanosaeta concilii
           GP-6]
 gi|328929786|gb|AEB69588.1| NOL1/NOP2/sun family putative RNA methylase [Methanosaeta concilii
           GP-6]
          Length = 301

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 104/236 (44%), Gaps = 19/236 (8%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTA 268
           + +L GF      +Q+  + +P  +        VLDLCA+PG KT Q+        +V A
Sbjct: 73  VENLSGF----IHIQEELSMVPPLVLDPQPGELVLDLCASPGSKTCQISQMMKNLGRVIA 128

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPD 327
            + S  R+  LR N +RL +    I   D   +  +   FD VLVDAPCSS G  RR P 
Sbjct: 129 NEPSLARIAPLRSNCERLGVMNVAITRYDGRRFPSRPVQFDRVLVDAPCSSEGRERRGPG 188

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           VL    +   +     Q  LL   I   KPGGIVV+S C+   +++E V++ VL ++ + 
Sbjct: 189 VLCKSSSKRSMDLHRLQADLLRNAIRLTKPGGIVVYSTCTYAPEENELVIESVLETARLE 248

Query: 388 VELVP---LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +P         +   + +    E   R  P +        +   GFF   L +
Sbjct: 249 RISIPGLLACPGITEWGGINLNHEVEKTARYYPHL--------NDTGGFFVAKLIK 296


>gi|31559059|gb|AAP50513.1| Fmv [Vibrio vulnificus]
          Length = 178

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 26/200 (13%)

Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYC 302
           D CAAPGGKTA     VS  +V ALD  ++RL+++  NL RL+L A        +   + 
Sbjct: 1   DCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKVICGDARNPEQWW 60

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + FD +L+DAPCS+TG IRRHPD+ W R T+DI   A  Q ++     + +KPGG +V
Sbjct: 61  QGEQFDRILLDAPCSATGVIRRHPDIKWLRRTEDITALAQLQSEIFDAMWAQLKPGGTLV 120

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS+   ++ E V+  L  +                  +  +       +I P     
Sbjct: 121 YATCSITPMENVEQVKAFLARTSAA--------------QLVGSERENPGRQIIPG---- 162

Query: 423 IDGVSSGMDGFFAVALRRLI 442
                  MDGF+   L +  
Sbjct: 163 ----EEDMDGFYYAVLVKQA 178


>gi|55822952|ref|YP_141393.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|55738937|gb|AAV62578.1| rRNA methyltransferase, putative [Streptococcus thermophilus
           CNRZ1066]
          Length = 446

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 112/316 (35%), Gaps = 25/316 (7%)

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
           +            P  F E+ ++  G E     +            V         K   
Sbjct: 1   MVQFFDRKETMKFPSDFIEKYKDLLGAEAEEFFTSFDQEA------VSAYRINPLKKQQK 54

Query: 196 VMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                           I       A G+ + Q+ +A +  Q+        VLDL AAPGG
Sbjct: 55  DYPDPIPGTPWGYYGKISGKSSDHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGG 114

Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDA 309
           K+      + +   + + +++ +R + L  N++R       +     D      K  FD 
Sbjct: 115 KSTHLLSYLDNTGLLVSNEINFKRSKVLVENIERFGAKNVVVTNTSADKLAKVFKNYFDM 174

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           ++ D PCS  G  R+ PD +     D   + A  Q+ +L  G+  + PGG +V+S C+  
Sbjct: 175 IVFDGPCSGEGMFRKDPDAIQYWHKDYPSELAQLQKDILADGLKMLAPGGQLVYSTCTWS 234

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
            +++E VV  +L + P  +ELV +      S  +    +     R+ P   +        
Sbjct: 235 PEENEGVVAWILENYP-DLELVAIPKLNGMSDGIDFPETA----RMYPHHFKGEGQ---- 285

Query: 430 MDGFFAVALRRLIQPK 445
               F    +    P+
Sbjct: 286 ----FVAKFQDKRMPE 297


>gi|53715011|ref|YP_101003.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis YCH46]
 gi|52217876|dbj|BAD50469.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis YCH46]
          Length = 472

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 117/304 (38%), Gaps = 19/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E      G E    +S A        + +       A   +           
Sbjct: 1   MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60

Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260
             L + +     P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+     
Sbjct: 61  YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
               G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS
Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVVVTNNDPSDFSRIGSFFDVILTDVPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE +
Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240

Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
             +        E +PL   A W      +A +     R  P   +          GFF  
Sbjct: 241 AWI--RQEFGAEPLPLAVPAEWNITGSLLAGADAPVYRFLPHKTQGE--------GFFLA 290

Query: 437 ALRR 440
           ALR+
Sbjct: 291 ALRK 294


>gi|170016993|ref|YP_001727912.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc citreum KM20]
 gi|169803850|gb|ACA82468.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc citreum KM20]
          Length = 479

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 34/248 (13%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
            + Q+ SA    ++        VLDL AAPGGK+      +     + + ++   R + L
Sbjct: 78  VYSQEPSAQFVGEVLHPKPGERVLDLAAAPGGKSTHLAAFMQQQGLLWSNEIFLNRAKIL 137

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R+ +    +      +   K    FD +L+DAPCS  G   ++   +     D  
Sbjct: 138 SENIERMGVQNSIVSSQTPAELSAKLPQYFDKILLDAPCSGEGMFHKNEAAIQQWHKDFP 197

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + A  QR +L + +  +KPGG +V+S C+   ++ E+++  +L + P    L  +N   
Sbjct: 198 QELADLQRDILSEAVKMLKPGGQIVYSTCTFAPEEDEQMIAWLLSTYP-EFSLEVINKPV 256

Query: 398 WKSIDMAMALSPEG--------------------WIRITPDMLEKIDGVSSGMDGFFAVA 437
              ID       +                       R+ P+ L+          G F   
Sbjct: 257 SARIDDGEPAWADKAYTDGTNHQSQTQSQQILKQTARLWPNHLQGE--------GHFVAK 308

Query: 438 LRRLIQPK 445
           L +   P+
Sbjct: 309 LSKQANPE 316


>gi|312278352|gb|ADQ63009.1| RRNA methyltransferase, putative [Streptococcus thermophilus ND03]
          Length = 436

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 111/306 (36%), Gaps = 25/306 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P  F E+ ++  G E     +            V         K             
Sbjct: 1   MKFPSDFIEKYKDLLGAEAEEFFTSFDQEA------VSAYRINPLKKQQKDYPDPIPGTP 54

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 I       A G+ + Q+ +A +  Q+        VLDL AAPGGK+      + 
Sbjct: 55  WGHYGKISGKSSDHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGGKSTHLLSYLD 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + + +++ +R + L  N++R       +     D      K  FD ++ D PCS  
Sbjct: 115 NTGLLVSNEINFKRSKVLVENIERFGAKNVVVTNTSADKLAKVFKNYFDMIVFDGPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +     D   + A  Q+ +L  G+  + PGG +V+S C+   +++E VV  
Sbjct: 175 GMFRKDPDAIQYWHKDYPSELAQLQKDILADGLKMLAPGGQLVYSTCTWSPEENEGVVAW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L + P  +ELV +      S  +    +     R+ P   +            F    +
Sbjct: 235 ILENYP-DLELVAIPKLNGMSDGIDFPETA----RMYPHHFKGEGQ--------FVAKFQ 281

Query: 440 RLIQPK 445
               P+
Sbjct: 282 DKRMPE 287


>gi|218132886|ref|ZP_03461690.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991759|gb|EEC57763.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC
           43243]
          Length = 374

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 26/319 (8%)

Query: 1   MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M + M   N R V   +L    +       +       S F+ L +  +  +  +   T+
Sbjct: 1   MNNTMDNVNLRAVVLDILLENDKNPGHSNLITGQAL--SKFQYLPKSQRAFISRLAEGTI 58

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
                 D ++D V   S  + K  ++ ++R+S  Q+ Y+D V   AV + AV+ A++ + 
Sbjct: 59  ERSIEEDWLIDHVSSVSTKKMKPVIRNIMRMSAYQLKYMDSVPVSAVCNEAVKLARK-RG 117

Query: 117 NRHFAKLVNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
                  VN +LR            +K + ++       +PE+    L +  G      +
Sbjct: 118 FSSLTGFVNGVLRSLARDINNIQYPDKSDFIRYCMIRYSMPEYVVRILMDECGS-CTEDV 176

Query: 169 SDACISPLYIDLTVKFDIET---WAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAE 220
                    + +     + T      KL    +      +         + +  L  F E
Sbjct: 177 LKGFEKEHRLYIRCNTGLITPGGLKKKLTDEGVTVEDTCVPYAFAISGYDYLADLTSFEE 236

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEK 278
           G++ VQD S+ +            V+D+CAAPGGK       G+ +T  A DVS+ ++  
Sbjct: 237 GLFQVQDLSSILAGLAVNPNPGDYVVDVCAAPGGKCLHAAQRGSDITVEARDVSEAKVGL 296

Query: 279 LRCNLDRLHLYAEDIIEMD 297
           +R N++RLH+        D
Sbjct: 297 IRDNIERLHMDNVTAKVWD 315


>gi|323306054|gb|EGA59788.1| Ncl1p [Saccharomyces cerevisiae FostersB]
          Length = 684

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +  K  K    F +      ++  +  + L  RI G            +  
Sbjct: 27  WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +       ++L    D   W   +   ++       K     +V     A
Sbjct: 87  HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V A D 
Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +                 FD +L D PCS  
Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E VV +
Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323

Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405
            LR     + LV                                   L+S +  S + A 
Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +R+ P              GFF     ++
Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411


>gi|322371799|ref|ZP_08046342.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus
           DX253]
 gi|320548684|gb|EFW90355.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus
           DX253]
          Length = 301

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 113/301 (37%), Gaps = 15/301 (4%)

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP---TGGIRL 205
           P    E + + +   R               +    +  T A     V           L
Sbjct: 3   PLERYEPILDDFEAFRAACERPLPSVVRVNRIKATREQATRAFDEENVEWTPREWNENVL 62

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
           +   +   + P F  G    Q+  +SIP  +        VLD CAAPG KT QL   +  
Sbjct: 63  EIEGKPGNTWPSFH-GWTHGQEEVSSIPAFVLDPEPGERVLDSCAAPGSKTTQLAALMDD 121

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSS 318
              V A D +  RL  LR N +RL +    +   DA ++  K      FDA LVD PCS 
Sbjct: 122 TGLVVANDSNLGRLSALRFNTERLGVTCAAVTNQDARNFSLKPFGLSAFDAALVDVPCSC 181

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            GT+R++P  L     D I   A  Q+ +L + +   + GG VV+S C+   +++E V+ 
Sbjct: 182 EGTVRKNPTALDDWGLDHIEGVAGVQKGILRRAVQATREGGTVVYSTCTFAPEENEAVLD 241

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            VL      +    +       +        +  IR      ++     +   GFF   L
Sbjct: 242 YVLAREDCRLVEYDIGLRSEPGLTEWHGDEFDESIR----KAKRFYPHHNDTGGFFCAKL 297

Query: 439 R 439
            
Sbjct: 298 E 298


>gi|226325128|ref|ZP_03800646.1| hypothetical protein COPCOM_02920 [Coprococcus comes ATCC 27758]
 gi|225206476|gb|EEG88830.1| hypothetical protein COPCOM_02920 [Coprococcus comes ATCC 27758]
          Length = 473

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 19/259 (7%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           ++  +     G        S    P +  G++++Q+ SA  P           VLD+CAA
Sbjct: 65  EITPIPWIDNGFYYDGEKISPAKHPYYFAGLYYLQEPSAMTPANRLPVEPGDRVLDVCAA 124

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKL 306
           PGGK  +    + +   + A D+S  R   L  NL+   +        E    +      
Sbjct: 125 PGGKATELGAKLQNEGVLVANDISSSRARGLLKNLEVFGIGNMLVMSEEPGRLERYFSGY 184

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L+DAPCS  G  R+   ++   +       +  QR ++ Q    +KPGG++++S C
Sbjct: 185 FDKILIDAPCSGEGMFRKDKKMVRAWEEHGPEFFSKLQRSIITQAARMLKPGGMMLYSTC 244

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-----ALSPEGWIRITPDMLE 421
           + D  ++E  ++ +L   P   E+  +      +                 +RI P  ++
Sbjct: 245 TFDPLENEGTIEYLLGEYP-EFEIQEIAEYEGFAPGRPEVTKSKDPDFAKTVRIFPHHMK 303

Query: 422 KIDGVSSGMDGFFAVALRR 440
                     G +   L++
Sbjct: 304 GE--------GHYLALLKK 314


>gi|325694314|gb|EGD36228.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK150]
 gi|325696843|gb|EGD38731.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK160]
          Length = 434

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 118/299 (39%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+ E   G E       A      I       ++      +  +  T     
Sbjct: 1   MDFPKGFKEKYEQILGSEAAEFF--ATFDEEPISAFRSNPLKESQQNFSDAIPQTDWGFY 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
            ++            G+ + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 59  GKVSG---KSAEHVTGLVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     +      +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D  V+ A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQPDATQYWTPDYPVQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P  +EL+ ++     +  +    +     R+ P   +            FA   R
Sbjct: 236 LEEFP--LELIDISKINGMTEGIGFPETA----RMYPHRFKGEGQ--------FAAHFR 280


>gi|225870415|ref|YP_002746362.1| NOL1/NOP2/sun family protein [Streptococcus equi subsp. equi 4047]
 gi|225699819|emb|CAW93652.1| NOL1/NOP2/sun family protein [Streptococcus equi subsp. equi 4047]
          Length = 435

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 19/240 (7%)

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +    P    GV + Q+ +A +  Q+        VLDL AAPGGK+ Q    + 
Sbjct: 55  WGYYGRVSGKSPNHVSGVVYSQEPAAQMVAQVASPAKGTRVLDLAAAPGGKSTQLLAYLE 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + + ++S +R + L  N++R       +     D       + FD ++ D PCS  
Sbjct: 115 NTGLLVSNEISTKRSKALVENIERFGARNVIVTNESADRLAAVFPEYFDTIVFDGPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ P+ +     D     A  QR +L + I  +KPGG +++S C+   +++EEVV+ 
Sbjct: 175 GMFRKDPNAVSYWHKDYPAACASLQRSILAEAIPMLKPGGQLIYSTCTWSPEENEEVVRW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L S    +EL  +     K   MA  +      R+ P   +            F   L+
Sbjct: 235 LLESY-DFLELEHI----PKINGMAEGIGMPQAARMYPHRFKGEGQ--------FVAKLK 281


>gi|91793400|ref|YP_563051.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
           denitrificans OS217]
 gi|123356754|sp|Q12MJ8|RSMF_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|91715402|gb|ABE55328.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella
           denitrificans OS217]
          Length = 505

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 23/240 (9%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274
           + +    +   +A            L VLD+ +APG KT Q+   + +   + A + S  
Sbjct: 92  YIQEASSMLPPTALFTNDDADERAPLRVLDMASAPGSKTTQMAALMNNNGLLIANEYSAS 151

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R++ L  N+ R+ +    +   D   +   +   FDAVL+DAPC   GT+R+  + L   
Sbjct: 152 RVKVLHANVLRMGVSNCALTHFDGRVFGEYQYEAFDAVLLDAPCGGEGTVRKDQNALKEW 211

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             DD++  A  Q+ L+      +KPGG +V+S C+L + +++ + Q +L   P  V    
Sbjct: 212 QLDDVIAIADTQKDLIEAAFLALKPGGALVYSTCTLSQLENQAICQHLLSRYPEAVAFES 271

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI-------QPK 445
           L + +      A A + EG++ + P + +          GFF   +R+         QPK
Sbjct: 272 LATLF---DGAAKACTEEGFLHVWPQIYDSE--------GFFVAKMRKTASVPRIKSQPK 320


>gi|330446010|ref|ZP_08309662.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490201|dbj|GAA04159.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 476

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 120/266 (45%), Gaps = 21/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                 L  V     G  ++   E    + +      G++++Q+AS+ +PV      N+ 
Sbjct: 57  ANRGWTLTPVPWCDTGFWIEREDEDSVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDA 116

Query: 244 SVL--DLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
                D+ +APG KT      + +   + A +++  R++ L  NL R  +Y   +   D 
Sbjct: 117 LDCVLDMASAPGSKTTQIACTMQNQGALVANELAASRIKVLHSNLQRCGVYNAALTHFDG 176

Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +     + FD++L+DAPCS  G IR+  D +       I + A  QR L++     +K
Sbjct: 177 CVFGTWAPEAFDSILLDAPCSGEGAIRKDDDAMANWSLASIEEIAEVQRNLIVSAFQALK 236

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG++V+S C+L++ ++++V   +       V+  PLN  +        +L+ +G++ + 
Sbjct: 237 TGGVMVYSTCTLNQSENQDVCHFLKEKFGDAVQFEPLNDLF---DGAEKSLTKDGFLHVY 293

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P + +          GFF   +R+L 
Sbjct: 294 PQIFDSE--------GFFVARIRKLA 311


>gi|189067497|dbj|BAG37756.1| unnamed protein product [Homo sapiens]
          Length = 466

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 153/409 (37%), Gaps = 29/409 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  R    S +P + +         + V 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     K   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L D  CS +G   R        T     +
Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILPDPSCSGSGMPSRQLEEPGAGTPSPVRL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +P    L P   
Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           A W    ++     E  +R +P+             GFF   + R+  P
Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVP 428


>gi|322391752|ref|ZP_08065217.1| NOL1/NOP2/sun family protein [Streptococcus peroris ATCC 700780]
 gi|321145232|gb|EFX40628.1| NOL1/NOP2/sun family protein [Streptococcus peroris ATCC 700780]
          Length = 437

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 117/299 (39%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F ++       +   A   +          +    E+     +A+     G   
Sbjct: 1   MQFPEGFVKK-YETILGDEARAFLASFDDEAVSAFRINPLRESQVSFSDAIPNTPWGYYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K              G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL+     
Sbjct: 60  KVS----GKSQEHVTGLVYSQEPAAQMVAQVAQPKPGMKVLDLAAAPGGKSTQLVSYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 DGLLVSNEISSKRAKILVENMERFGATNVVVTNESTDRLAKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE++  +
Sbjct: 176 MFRKQPDAMDYWSVDYPGQCASLQREILEDAVNMLGEGGRLVYSTCTWAPEENEEIINWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L +     EL+P+         + +  +     R+ P   +            F   L+
Sbjct: 236 LDTY--DFELIPIEHINGMVPGIDLPETA----RMYPHHFKGEGQ--------FVAHLK 280


>gi|312373886|gb|EFR21555.1| hypothetical protein AND_16850 [Anopheles darlingi]
          Length = 3164

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 110/321 (34%), Gaps = 58/321 (18%)

Query: 176  LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
                L    +   W  +L+   +       +     I        G    Q+A + IP  
Sbjct: 2570 PPRSLEWYPNELAWQLELSRKDIRRSEPLFRLHNFLISET---NSGNISRQEAVSMIPPL 2626

Query: 236  LFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCNLDR 285
            +     +  VLD+CAAPG KTAQLI S             V A DV   R   L     R
Sbjct: 2627 VLDVQPHHKVLDMCAAPGSKTAQLIESLHGSDGAKIPSGFVIANDVDNNRCYMLVHQAKR 2686

Query: 286  LHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
            L      +   D+  +                +D +L D PCS  GT+R++PD+      
Sbjct: 2687 LSSPCFMVTNADSSTFPVLQISQPDGTIAPLKYDRILCDVPCSGDGTMRKNPDIWTKWSL 2746

Query: 335  DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---- 390
            +        Q ++L +G   +  GG +V+S CSL+  ++E V+ ++L+ S   +EL    
Sbjct: 2747 NQANNLHGLQHRILKRGAELLAVGGKLVYSTCSLNPIENEAVLHRLLKQSEGALELSECA 2806

Query: 391  ------------------------------VPLNSAYWKSIDMAMALSPEGWIRITPDML 420
                                          VP N       DM    + E   +   D  
Sbjct: 2807 NLLPSLKYRKGMTYWEPATKDLKYYKTFADVPENQRTVVRPDMFPPSAEEAIEKYHLDRA 2866

Query: 421  EKIDGVSSGMDGFFAVALRRL 441
             +I        GFF   L + 
Sbjct: 2867 LRILPHHQNTGGFFIALLEKK 2887


>gi|156103405|ref|XP_001617395.1| sun-family protein [Plasmodium vivax SaI-1]
 gi|148806269|gb|EDL47668.1| sun-family protein, putative [Plasmodium vivax]
          Length = 376

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/431 (15%), Positives = 127/431 (29%), Gaps = 89/431 (20%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
             L   + L +  +    +  +D+  +   V   +R    +  +                
Sbjct: 20  SPLDIYMRLYFKAN---SIKSKDKPFISDHVYNIIRNKTLLSYLSAP------------- 63

Query: 83  QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142
                             Y  V       K    +  +   +N+                
Sbjct: 64  ---------------SPLYTSV------IKTYFASDRWKYEMNNE-----------KIPA 91

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLP 199
                 P+   E+L N YG+++   +         + L V  +          L +  + 
Sbjct: 92  HVRYSFPKELYEQLVNCYGEKKSHTLMSILNEKAPVFLRVNTNKISRNDLYKLLMSKGVS 151

Query: 200 TGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
                      L      + +   +  G + +QD ++ I            VLD CA  G
Sbjct: 152 VEKCVNSPQGLLLTKSYILKNNNEYRRGFFEMQDEASQIVSSKIPVQPGYKVLDFCAGSG 211

Query: 254 GK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDA 309
           GK    +  + +  KV   DV  + L + +  L R  +     +              D 
Sbjct: 212 GKTLAFSPKMENTGKVYLHDVRDKMLSQAKVRLRRAGIQNYILLHSNHILLNKLVGCMDT 271

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           V+VDAPC+ TG +RR+P++        + +    QR++  + + ++K  G + +  CS+ 
Sbjct: 272 VIVDAPCTGTGALRRNPEMKHKYTNGRLYEYVNLQREIFQRALLYLKKNGKIAYITCSIL 331

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++    +       + +   P +S                               S  
Sbjct: 332 DAENVHQAKYFCEKHNLFLSEPPFHS----------------------------LPQSKS 363

Query: 430 MDGFFAVALRR 440
           MDGFF     R
Sbjct: 364 MDGFFLAIFER 374


>gi|190408849|gb|EDV12114.1| tRNA:m5C-methyltransferase [Saccharomyces cerevisiae RM11-1a]
          Length = 682

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +  K  K    F +      ++  +  + L  RI G            +  
Sbjct: 27  WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +       ++L    D   W   +   ++       K     +V     A
Sbjct: 87  HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V A D 
Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +                 FD +L D PCS  
Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGYSNNKNDVLKFDRILCDVPCSGD 263

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E VV +
Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323

Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405
            LR     + LV                                   L+S +  S + A 
Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +R+ P              GFF     ++
Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411


>gi|125717779|ref|YP_001034912.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK36]
 gi|125497696|gb|ABN44362.1| NOL1/NOP2/sun family protein, putative [Streptococcus sanguinis
           SK36]
          Length = 434

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MDFPKGFKEK-YEQILGAEAAEFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     D+     +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERYGARNVLVTNESADSLAQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQPDATQYWTLDYPAQCAQLQREILTTAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELIDIPKINGMAEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|302308712|ref|NP_985726.2| AFR179Cp [Ashbya gossypii ATCC 10895]
 gi|299790759|gb|AAS53550.2| AFR179Cp [Ashbya gossypii ATCC 10895]
          Length = 700

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 131/366 (35%), Gaps = 62/366 (16%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
             ++  + ++ L  RI G     +   E  EN +  +    + D         L    D 
Sbjct: 55  DFKKTCQTQLPLTFRITGSRKHAQEVLELFENEHLPKLTNVVWDGEKVEAPKALPWYGDN 114

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
             W   ++  ++       K     +V     A G    Q+A + IP  + G   + SVL
Sbjct: 115 MAWQLDVSKSVIRKNEEFSKMQRFLVVEN---AVGNISRQEAVSMIPPIVLGVEPHHSVL 171

Query: 247 DLCAAPGGKTAQ--------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
           D+CAAPG KTAQ               V A D   RR   L   L RL+     ++  DA
Sbjct: 172 DMCAAPGSKTAQLVEALHANGPEPSGFVVANDADYRRSHMLVHQLKRLNSANLIVVNHDA 231

Query: 299 FDYC---------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +              FD VL D PCS  GT+R++ +V     T   +     Q  +L 
Sbjct: 232 QFFPRIKTAEGSKDFLKFDRVLCDVPCSGDGTMRKNINVWKDWGTGSGLGLHTVQLNILN 291

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA------------- 396
           +G++ +K GG +V+S CSL+  ++E VV   LR     ++LV  +               
Sbjct: 292 RGLTLLKNGGRLVYSTCSLNPIENEAVVAAALRKWGAKIKLVNCDDQLLGLVRSTGISSW 351

Query: 397 ---------------------YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
                                +  S + A   + E  IR+ P              GFF 
Sbjct: 352 PVLDKNYEEKNKGDDGTIATWFPPSEEEAKEFNLENCIRVYPH--------QQNTGGFFI 403

Query: 436 VALRRL 441
               ++
Sbjct: 404 SVFEKI 409


>gi|311110618|ref|ZP_07712015.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri MV-22]
 gi|311065772|gb|EFQ46112.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri MV-22]
          Length = 464

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 119/302 (39%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F ++ +N  G+E       +  SP      +      +     ++  P      
Sbjct: 1   MSLPVEFIKKYQNLLGEEESNKFFASIDSPSKKGFRLNPLKNNYQDVQYSLEEPIEFTSD 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
               E       +  G  + QD SA  P           VLDLCAAPGGK+      + +
Sbjct: 61  GYYGEVSGRDSEWTGGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLEN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              + A ++SK R + LR NL+R       +          K    FD +LVDAPCS  G
Sbjct: 121 KGLLVANEISKSRAKDLRENLERWGATNVVVTNESPERLSKKLPHFFDKILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     + ++     Q+++L Q ++ +KPGG +V+S C+   ++ EE+V  +
Sbjct: 181 MFRKDPAAMQYWSPEYVLTCQARQKEILTQAMNMLKPGGELVYSTCTYSPEEDEEIVAWL 240

Query: 381 LRSSPIPVELVPLNSAYW-KSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + +  + +E + L         D + +  PE    +R+                  F   
Sbjct: 241 VENYHLKIEPLKLYPGMSMGKADWSKSNLPELKDTVRLWFQNGVGEGQ--------FVAH 292

Query: 438 LR 439
           LR
Sbjct: 293 LR 294


>gi|269102648|ref|ZP_06155345.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162546|gb|EEZ41042.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 373

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 16/203 (7%)

Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD+ +APG KT      + +   + A +++  R++ L  NL R  +Y+  +   D   +
Sbjct: 17  VLDMASAPGSKTTQIACAMENRGALVANELAASRIKVLHSNLQRCGVYSVALTHFDGCVF 76

Query: 302 --CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                + FD++L+DAPCS  G IR+  D +     + I + A  QR L++     +KPGG
Sbjct: 77  GGWAPESFDSILLDAPCSGEGAIRKDEDAMKNWTLNSIEEIAEVQRNLIVSAFQALKPGG 136

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           ++V+S C+L+ +++++V   +  +    VE  PL+  +         L+ +G++ + P +
Sbjct: 137 VMVYSTCTLNTRENQDVCHYLKETYGDAVEFEPLDDLFE---GAKETLTEDGFLHVYPQV 193

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
            +          GFF   +R+L 
Sbjct: 194 YDSE--------GFFVARIRKLA 208


>gi|256269254|gb|EEU04576.1| Ncl1p [Saccharomyces cerevisiae JAY291]
          Length = 682

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +  K  K    F +      ++  +  + L  RI G            +  
Sbjct: 27  WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +       ++L    D   W   +   ++       K     +V     A
Sbjct: 87  HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V A D 
Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +                 FD +L D PCS  
Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGYSNNKNDVLKFDRILCDVPCSGD 263

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E VV +
Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323

Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405
            LR     + LV                                   L+S +  S + A 
Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +R+ P              GFF     ++
Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411


>gi|195978037|ref|YP_002123281.1| tRNA and rRNA cytosine-C5-methylases [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974742|gb|ACG62268.1| tRNA and rRNA cytosine-C5-methylases [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 438

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 18/222 (8%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
            + Q+ +A +  Q+        VLDL AAPGGK+ Q    + +   + + ++S +R + L
Sbjct: 76  VYSQEPAAQMVAQVASPAKGTRVLDLAAAPGGKSTQLLAYLENTGLLVSNEISTKRSKAL 135

Query: 280 RCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R       +     D       + FD ++ D PCS  G  R+ P+ +     D  
Sbjct: 136 VENIERFGARNVVVTNESADRLAAVFPEYFDTIVFDGPCSGEGMFRKDPNAMSYWHKDYP 195

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
              A  QR +L + I  +KPGG +++S C+   +++EEVV+ +L S    +EL  +    
Sbjct: 196 AACANLQRSILSEAIPMLKPGGQLIYSTCTWSPEENEEVVRWLLESY-DFLELEHIPKIN 254

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             S  + M  +     R+ P   +            F   L+
Sbjct: 255 GMSEGIGMPQAA----RMYPHRFKGEGQ--------FVAKLK 284


>gi|323498366|ref|ZP_08103366.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sinaloensis
           DSM 21326]
 gi|323316608|gb|EGA69619.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sinaloensis
           DSM 21326]
          Length = 474

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 21/258 (8%)

Query: 193 LNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL---NNLSVLD 247
           L+ V     G  +   E    + +      G++++Q+AS+ +PV            SVLD
Sbjct: 63  LSPVPWCPEGFWIEADESSVPLGNTAEHMSGLFYIQEASSMMPVSALFLSSEDEFTSVLD 122

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--C 302
           + AAPG KT Q    + +   + A + S  R++ L  N++R  +    +   D   +   
Sbjct: 123 MAAAPGSKTTQIAAKMGNDGVLVANEFSSSRVKVLHANIERCGVRNTVLSNYDGRVFGGW 182

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + F+AVL+DAPCS  GT+R+  D +       +++ +  Q+ L+      +K GG +V
Sbjct: 183 LPEQFEAVLIDAPCSGEGTVRKDADAMKNWTKSSVIEISETQKDLIESAFHALKVGGSMV 242

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C+L  +++++V   + ++    VE   L   +    D   +L+PEG++ I P   + 
Sbjct: 243 YSTCTLSIEENQQVCHHLKQTFGDAVEFQSLAGLFP---DAEKSLTPEGFLHIFPQTYDC 299

Query: 423 IDGVSSGMDGFFAVALRR 440
                    GFF   +++
Sbjct: 300 E--------GFFVARIKK 309


>gi|268319392|ref|YP_003293048.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus johnsonii
           FI9785]
 gi|262397767|emb|CAX66781.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus johnsonii
           FI9785]
          Length = 463

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E+ +   G+E       A  SP      +      +     ++  P    + 
Sbjct: 1   MSLPIEFVEKYKKLLGEEESSKFFTAINSPSKKGFRLNPLKNNYQDVQYSLKEPIEFTKD 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262
               E       +  G  + QD SA  P           VLDLCAAPGGK+  L      
Sbjct: 61  GYYGEISGRDSEWTGGYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDD 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + A ++SK R + LR NL+R       +     D         FD +LVDAPCS  G
Sbjct: 121 TGLLVANEISKSRAKDLRENLERWGATNVVVTNESPDRLSKKMPHFFDKILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P        D ++     Q+++L + +  +KP G +V+S C+   ++ EE+V  +
Sbjct: 181 MFRKDPAATQYWSPDYVLTCQTRQKEILSEAMKMLKPDGEIVYSTCTYSPEEDEEIVAWL 240

Query: 381 LRSSPIPVELVPLNSAYWKS-IDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + + P+ +E + L S       + + +  PE    +R+                  F   
Sbjct: 241 VENYPLEIEPLKLYSGMSAGRPEWSKSNLPELKETVRLWFQNGVGEGQ--------FVAH 292

Query: 438 LR 439
           L+
Sbjct: 293 LK 294


>gi|225028496|ref|ZP_03717688.1| hypothetical protein EUBHAL_02773 [Eubacterium hallii DSM 3353]
 gi|224954181|gb|EEG35390.1| hypothetical protein EUBHAL_02773 [Eubacterium hallii DSM 3353]
          Length = 556

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 20/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E  A      +            +     P ++ G++++Q+ SA  P           VL
Sbjct: 48  ERIAPFHLKKVPWISNGYFYNAEDVPAKHPFYSAGLYYLQEPSAMTPASRLKVQPGERVL 107

Query: 247 DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           DLCAAPGGK  +L         + A D++  R + L  NL+   +    +          
Sbjct: 108 DLCAAPGGKATELGAALQGEGLLVANDINTARAKALLRNLELFGISNSFVTNEPPHVLAE 167

Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
           +    F  ++VDAPCS  G  R++P V+ +         +  QR++++Q    + PGG++
Sbjct: 168 RFPEFFHKIMVDAPCSGEGMFRKNPAVVDSWKEKGPEYFSKLQREIIVQAADMLLPGGMM 227

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS------IDMAMALSPEGWIRI 415
            +S C+    ++E+ +  +L+  P  +E+VP+      +       D A   S +   RI
Sbjct: 228 FYSTCTFSPLENEKTITHLLKERP-DMEVVPMEDYENFAEGLTSYKDEAFDESCKLCRRI 286

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P  +           G F   L + 
Sbjct: 287 WPHKMSGE--------GHFMALLHKK 304


>gi|258648576|ref|ZP_05736045.1| NOL1/NOP2/sun family protein [Prevotella tannerae ATCC 51259]
 gi|260851354|gb|EEX71223.1| NOL1/NOP2/sun family protein [Prevotella tannerae ATCC 51259]
          Length = 449

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 110/300 (36%), Gaps = 18/300 (6%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +PE F  + ++  G E   A+  A        + V  +  T        +         
Sbjct: 3   HLPEAFISQTKSLLGLEETEALIKALSEEAPTSIRVNPNKATAIS--GESVPWCETGYYL 60

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLI---V 261
               S    P F  G ++VQ+AS+    Q+          VLDLCAAPGGK+        
Sbjct: 61  SERPSFTLDPLFHAGAYYVQEASSMFLSQVIKALPEEPRRVLDLCAAPGGKSTLWRAELP 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320
               + A +   RR   L  NL +       + E     +      FD +  D PCS  G
Sbjct: 121 EQTLLVANEPIHRRAMILAENLAKWGHPDVIVTEDYPKSFSHLPGCFDVIAADVPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     +++   A  Q +++      ++ GG +V+S C+ ++ ++E+ ++++
Sbjct: 181 MFRKDPGAIDEWSKENVDFCAQRQFEIISDVWPALREGGFLVYSTCTFNRAENEDNIERI 240

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            R   +  E +P+       I  ++           P              G F   LR+
Sbjct: 241 CRE--LGAETLPIPIKEEWKIRGSLTKDSLHVYHFFPHCTRGE--------GIFFALLRK 290


>gi|312862813|ref|ZP_07723053.1| NOL1/NOP2/sun family protein [Streptococcus vestibularis F0396]
 gi|311101673|gb|EFQ59876.1| NOL1/NOP2/sun family protein [Streptococcus vestibularis F0396]
          Length = 436

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 23/299 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P  F E+  N  G +       +               +      +A+     G   
Sbjct: 1   MQFPSDFIEKYNNLLG-DEAKDFFASFDQEAVSAYRTNPLKKQQKDFPDAIPETPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K            A G+ + Q+ +A +  Q+        VLDL AAPGGK+      + +
Sbjct: 60  KIS----GKSADHATGLVYSQEPAAQMVAQVAAPAKGSRVLDLAAAPGGKSTHLLSYLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     D      K  FD ++ D PCS  G
Sbjct: 116 TGLLVSNEINPKRSKILVENIERFGARNVVVTNTLADKLAKVFKNYFDTIVFDGPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     D   + A  Q+ +L  G+  + PGG +++S C+   +++E VV  +
Sbjct: 176 MFRKDPKAIQYWHKDYPSELAQLQKDILSDGLKMLAPGGQLIYSTCTWSPEENEGVVAWI 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L + P  +ELV +      S  +    +     R+ P   +            F    +
Sbjct: 236 LENYP-DLELVQIPKWNGMSDGIDFPETA----RMYPHHFKGEGQ--------FIAKFQ 281


>gi|55377492|ref|YP_135342.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula marismortui ATCC
           43049]
 gi|55230217|gb|AAV45636.1| tRNA and rRNA cytosine-C5-methylases [Haloarcula marismortui ATCC
           43049]
          Length = 318

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 101/252 (40%), Gaps = 20/252 (7%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
              G+ +        + P F  G    Q+  + IP  +        V D CAAPG KT Q
Sbjct: 72  WHDGLFVLPEDSPGANWPYFH-GWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQ 130

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFDAVL 311
           L   +    +V A D +  R+  LR N +RL      +   D  ++       + +D  L
Sbjct: 131 LAALMEDTGEVVATDNNLGRISALRTNTERLGATTVAVTHEDGRNHSLKPFDGEGYDRAL 190

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           VD PCS  GTIR++PD L       +   +  Q+ +L + +   +PGG VV+S C+   +
Sbjct: 191 VDVPCSCEGTIRKNPDTLEDWSLSHVEGISGVQKGILKRAVEVTEPGGTVVYSTCTFAPE 250

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGWIRITPDMLEKIDGVS 427
           ++E V+  VL      +    L   +   I    D +   S     RI P          
Sbjct: 251 ENEAVLDYVLDEVACEIVDYDLPLNHAPGITDWEDESFDPSVADAKRIYPHH-------- 302

Query: 428 SGMDGFFAVALR 439
           +   GFF   L 
Sbjct: 303 NDTGGFFCAKLE 314


>gi|297487827|ref|XP_002696495.1| PREDICTED: NOP2/Sun domain family, member 2 [Bos taurus]
 gi|296475648|gb|DAA17763.1| NOP2/Sun domain family, member 2 [Bos taurus]
          Length = 777

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 54/274 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 157 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 216

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            RR   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 217 NRRCYLLVHQAKRLGSPCIMVVNHDASCIPRLQVDVNGRKEILFYDRILCDVPCSGDGTM 276

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV       + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 277 RKNVDVWKKWSALNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 336

Query: 383 SSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S      +   +     ++ +G               +I P M     
Sbjct: 337 KSEGALELADVSSELPGLKWVPGLSQWKVMTKDGQWFTSWDDVPHNRHTQIRPTMFPPKD 396

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI 442
                        +I        GFF   L +  
Sbjct: 397 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKA 430


>gi|327469556|gb|EGF15025.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK330]
          Length = 434

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 113/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL +APGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPTKGMKVLDLASAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     +      +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERYGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E++V  +
Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVTWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|325689912|gb|EGD31916.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK115]
          Length = 434

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 112/299 (37%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+                               E   +  +A+     G   
Sbjct: 1   MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +S   + G    + + Q+ +A +  Q+      + VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     +      +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINSKRSKILVENIERYGARNVVVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD       D   + A  QR++L   +S +   G +V+S C+   +++E VV  +
Sbjct: 176 MFRKQPDATQYWTLDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENENVVAWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L   P+ +  +P  +   + I            R+ P   +            FA   R
Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280


>gi|306820624|ref|ZP_07454253.1| NOL1/NOP2/sun family protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551355|gb|EFM39317.1| NOL1/NOP2/sun family protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 436

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 106/263 (40%), Gaps = 19/263 (7%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
                     +P     L     +I   P +  G +++Q+ SAS  V        + VLD
Sbjct: 38  DIKSDCEYEKVPWSEDSLYVSEGNISKNPLYHTGAFYIQEPSASSVVNFLDVKKGMKVLD 97

Query: 248 LCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYC 302
           +CA+PGGKT Q+         + + D +  R+ +L  N++   L    I     D     
Sbjct: 98  MCASPGGKTFQISQRLSDDDILISNDANNSRVPQLLRNIEYHGLANVMITNETQDKLAEN 157

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD +L+D PCS  G  R+   ++ +       +    Q+ LL +    +K GG ++
Sbjct: 158 FPSFFDRILLDVPCSGEGMFRKDSKLMSSY-EKSKSQLVPVQKDLLTKASKMLKKGGKLI 216

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C+ +K+++E  + + L  +    E++ +   +  +    +  S     R+ P  L  
Sbjct: 217 YSTCTFNKRENELNIIEFLEEN-SDFEIINIEKNFNFTSFDELKESA----RLFPHKLRG 271

Query: 423 IDGVSSGMDGFFAVALRRLIQPK 445
                    G F   +++  + +
Sbjct: 272 E--------GHFLALVQKKGEEE 286


>gi|227890088|ref|ZP_04007893.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|227849532|gb|EEJ59618.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 461

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E+ +   G+E       A  SP      +      +     ++  P    + 
Sbjct: 1   MSLPIEFVEKYKKLLGEEESSKFFTAINSPSKKGFRLNPLKNNYQDVQYSLKEPIEFTKD 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262
               E       +  G  + QD SA  P           VLDLCAAPGGK+  L      
Sbjct: 61  GYYGEISGRDSEWTGGYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDD 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + A ++SK R + LR NL+R       +     D         FD +LVDAPCS  G
Sbjct: 121 MGLLVANEISKSRAKDLRENLERWGATNVVVTNESPDRLSKKLPHFFDKILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P        D ++     Q+++L + +  +KP G +V+S C+   ++ EE+V  +
Sbjct: 181 MFRKDPAATQYWSPDYVLTCQTRQKEILSEAMKMLKPDGEIVYSTCTYSPEEDEEIVAWL 240

Query: 381 LRSSPIPVELVPLNSAYWKS-IDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + + P+ +E + L S       + + +  PE    +R+                  F   
Sbjct: 241 VENYPLEIEPLKLYSGMSAGRPEWSKSNLPELKETVRLWFQNGVGEGQ--------FVAH 292

Query: 438 LR 439
           L+
Sbjct: 293 LK 294


>gi|119224046|gb|AAI26627.1| NSUN2 protein [Bos taurus]
          Length = 690

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 54/274 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 70  ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 129

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            RR   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 130 NRRCYLLVHQAKRLGSPCIMVVNHDASCIPRLQVDVNGRKEILFYDRILCDVPCSGDGTM 189

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV       + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 190 RKNVDVWKKWSALNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 249

Query: 383 SSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S      +   +     ++ +G               +I P M     
Sbjct: 250 KSEGALELADVSSELPGLKWVPGLSQWKVMTKDGQWFTSWDDVPHNRHTQIRPTMFPPKD 309

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI 442
                        +I        GFF   L +  
Sbjct: 310 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKA 343


>gi|116627792|ref|YP_820411.1| rRNA methyltransferase, putative [Streptococcus thermophilus LMD-9]
 gi|116101069|gb|ABJ66215.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus thermophilus
           LMD-9]
          Length = 436

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 111/306 (36%), Gaps = 25/306 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P  F E+ ++  G E     +            V         K             
Sbjct: 1   MKFPSDFIEKYKDLLGAEAEEFFTSFDQEA------VSAYRINPLKKQQKDYPDPIPGTP 54

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 I       A G+ + Q+ +A +  Q+        VLDL AAPGGK+      + 
Sbjct: 55  WGHYGKISGKSSDHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGGKSTHLLSYLD 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + + +++ +R + L  N++R       +     D      K  FD ++ D PCS  
Sbjct: 115 NTGLLVSNEINFKRSKVLVENIERFGAKNVVVTNTSADKLAKVFKNYFDMIVFDGPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +     D   + A  Q+ +L  G+  + PGG +V+S C+   +++E VV  
Sbjct: 175 GMFRKDPDAIQYWHKDYPSELAQLQKDILADGLKMLAPGGQLVYSTCTWSPEENEGVVAW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L + P  +ELV +      S  +    +     R+ P   +            F    +
Sbjct: 235 ILENYP-DLELVAIPKLNGMSDGIDFPETT----RMYPHHFKGEGQ--------FVAKFQ 281

Query: 440 RLIQPK 445
               P+
Sbjct: 282 DKRMPE 287


>gi|320168112|gb|EFW45011.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Capsaspora owczarzaki
           ATCC 30864]
          Length = 812

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/425 (18%), Positives = 138/425 (32%), Gaps = 93/425 (21%)

Query: 95  YLDVADYAVVDLAVE-QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFK 153
           YLD      +    E  AK+ +E         +   R    ++   +  A    + +   
Sbjct: 83  YLDNKKNRKLRQQKERAAKKAEEGIPADPAQRAEYHRHQPIEMTNARFEAFYKGLSQIIP 142

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           E   + + +     +  +        +T          +L           ++   E + 
Sbjct: 143 ENEWDAFMETIRKPLPTSF------RITGNSKKAAEMKRLLHQFYFPSIETVEIAGERVS 196

Query: 214 S---LPGFAEGVWWVQDASASIPVQLFGTLNNLSVL--------DLCAAPGGKTAQLIVS 262
               L  + +   +  D S  I             L        D+CAAPG KT QL+  
Sbjct: 197 RPECLSFYPDERAYQLDTSRKIFRSHPALSAFHKFLTVEVEMVLDMCAAPGSKTGQLVEM 256

Query: 263 GAKV---------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKK 305
             +           A D + +R   L     RL   +  +  +DA  +         P  
Sbjct: 257 LHQNDELMPSGFVVANDANYKRCYLLIHQTKRLCSPSLLVTNLDASLFPTILPGNRQPPV 316

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
           LFD +L DAPCS  GT+R++ DV               Q ++L + +  ++ GG++V+S 
Sbjct: 317 LFDRILCDAPCSGDGTMRKNLDVWKNWRPSSGSNMHRLQIRILRRAVQLLEIGGMMVYST 376

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----------------------------- 396
           CS+   ++E VV  +L+  P  +ELV ++                               
Sbjct: 377 CSMHPGENEAVVAAILQQMPGALELVDVSDKLPGLKRIPGLHTWKASAAVSKLMDGEGNW 436

Query: 397 ---------------------YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
                                +    ++A AL  E  +R+TP +            GFF 
Sbjct: 437 YSDASEVPVGHKEKRALRGSLFPPPPEVAAALHLERCVRVTPQLQ--------NTGGFFI 488

Query: 436 VALRR 440
             LR+
Sbjct: 489 ALLRK 493


>gi|90578629|ref|ZP_01234439.1| putative sun/nucleolar protein family protein [Vibrio angustum S14]
 gi|90439462|gb|EAS64643.1| putative sun/nucleolar protein family protein [Vibrio angustum S14]
          Length = 476

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 139/322 (43%), Gaps = 32/322 (9%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYID----LTVKFDIETWAHKLNAVM 197
           +     IP+ F + ++    +   +    AC            T+K  +E +  ++    
Sbjct: 1   MHPNIHIPDAFIDLIKQTMPEHLDIDEFIACCKTPLRRSIRVNTLKISVEDFLARVANRG 60

Query: 198 LPTGGIRLKEL----------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL- 246
                +   +             S+ +      G++++Q+AS+ +PV      N+     
Sbjct: 61  WTLTPVPWCDTGFWIEREDEDTVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCV 120

Query: 247 -DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            D+ +APG KT Q+   + +   + A +++  R++ L  NL R  ++   +   D   + 
Sbjct: 121 LDMASAPGSKTTQIASAMQNRGALVANELAASRIKVLHSNLQRCGVHNAALTHFDGCVFG 180

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD++L+DAPCS  G IR+  D +       I + A  QR L++     +K GG+
Sbjct: 181 TWAPESFDSILLDAPCSGEGAIRKDEDAMANWSLASIDEIAEVQRNLIVSAFQALKTGGV 240

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L++ +++ V   +       VE  PLN+ +        +L+ +G++ + P + 
Sbjct: 241 MVYSTCTLNQSENQAVCHFLKDKFGDAVEFEPLNTLF---DGAEKSLTKDGFLHVYPQIF 297

Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
           +          GFF   +R+L 
Sbjct: 298 DSE--------GFFVARIRKLA 311


>gi|332361484|gb|EGJ39288.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1056]
          Length = 434

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 19/232 (8%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
                   G+ + Q+ +A +  Q+      + VLDL AAPGGK+      + +   + + 
Sbjct: 63  GKSAEHVTGLVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDNTGLLVSN 122

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           +++ +R + L  N++R       +     D      +  FD +++DAPCS  G  R+ PD
Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESADRLAQVFEGYFDLIVLDAPCSGEGMFRKQPD 182

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                  D   + A  QR++L   +S +   G +V+S C+   +++E++V  +L   P+ 
Sbjct: 183 ATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVTWLLEEFPLE 242

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +  +P  +   + I            R+ P+  +            FA   R
Sbjct: 243 LIDIPKINGMTEGIGFPETA------RMYPNRFKGEGQ--------FAAHFR 280


>gi|255079384|ref|XP_002503272.1| predicted protein [Micromonas sp. RCC299]
 gi|226518538|gb|ACO64530.1| predicted protein [Micromonas sp. RCC299]
          Length = 1040

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 110/322 (34%), Gaps = 51/322 (15%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +  +      +    D   W     +         L+ + + +     +  G    Q+  
Sbjct: 121 EGNVVEPPRAVRWYPDRLAW-QFNYSRQQLRRLPFLESIHDFVKRANEY--GSITRQETV 177

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------------KVTALDVSKRRL 276
           + IP        +  VLD+CAAPG KT QL+                  V A DV  +R 
Sbjct: 178 SMIPAFFLNITPDHRVLDMCAAPGSKTFQLLEMLHGSLGEEKEKLPTGFVIANDVDLKRC 237

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPK-------KLFDAVLVDAPCSSTGTIRRHPDVL 329
             L     R +     +   +A  +            FDA+L D PCS  GT+R+ PD+ 
Sbjct: 238 NLLTHQTKRANSPGLLVTNHEAQHFPDIVSRGGRTFQFDAILCDVPCSGDGTMRKAPDIW 297

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
                 +       Q K+ ++    +K GG +V+S C+ +  + E VV  +L+ S   ++
Sbjct: 298 PRWSVGNGNGLHPLQLKIAVRAAQLLKIGGRLVYSTCTFNPIEDEAVVAALLQQSEGSLK 357

Query: 390 LVPLNSAYWKSIDMAMALSPE---------------GWIRITPDMLE------------- 421
           L+ ++    K +      + E                  ++ P M               
Sbjct: 358 LLDMSDQLPKLVRSPGIHTWEVHTKAGKANSFEEAQEVAKVHPTMFPDPSYAKLPLERCM 417

Query: 422 KIDGVSSGMDGFFAVALRRLIQ 443
           +I        GFF     ++ +
Sbjct: 418 RILPHQDDTGGFFIAVFEKVAE 439


>gi|14600772|ref|NP_147293.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
 gi|5104163|dbj|BAA79479.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
          Length = 352

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 128/309 (41%), Gaps = 20/309 (6%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
            I I+ E     L  +  K     I          +L      + +   ++ +     GI
Sbjct: 54  YIQILGEEEARELIAWNDKPLPETIRCNDFLIPCSELESMLSQKGFL--VSRIPWLPHGI 111

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG 263
            + E P  + +   + +G++++QD  + +   L G     +VLD+ AAPGGK+  +    
Sbjct: 112 EVLEQPIRVGATHEYMQGLYYIQDPGSMLVAYLLGVEPGETVLDMAAAPGGKSTHIQQLS 171

Query: 264 AKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCS 317
                  A+D+S+RR+  LR ++ R+   +   +  D+            D V++DAP +
Sbjct: 172 RDSTILVAVDISRRRMRALRSHMQRMGFRSYVAVRADSRLLPRIAGTGWADRVMLDAPST 231

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G IR+ P+   +R   D+++    Q +LL   +   +PG  ++++ CS   ++ E VV
Sbjct: 232 GEGIIRKDPERRRSRSQADVLRIHYLQLELLYTAVDLARPGAPILYAACSTSPEEGELVV 291

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG----WIRITPDMLEKIDGVSSGMDGF 433
            ++L            +      +D  + +   G     +R+ P           G +GF
Sbjct: 292 SRLLELRSDVEVERLESPVGSPGVDSYLGVDISGEARRCLRLWPQ--------RHGTEGF 343

Query: 434 FAVALRRLI 442
           F   +RR +
Sbjct: 344 FICRVRRRV 352


>gi|332021238|gb|EGI61623.1| tRNA (cytosine-5-)-methyltransferase [Acromyrmex echinatior]
          Length = 730

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 133/423 (31%), Gaps = 101/423 (23%)

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-------- 163
           ++ K+N   +   +     + RE  +         I+PE   +   +             
Sbjct: 19  EKQKKNEWNSASQSGSYADIIRENEDFENYYKTQGIVPEDKWDAFISTIRTNLPVAFRIT 78

Query: 164 -------RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG------IRLKELPE 210
                   +L I  +      ++  +  D E   ++   ++            +L+   +
Sbjct: 79  GSKAEAKALLEIIKSDFFKEILNADLDSDKEDVNNRAKTILHSLPFYPEELAWQLQLTRK 138

Query: 211 SIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
            I     +                  Q+  + +P  +     +  VLD+CAAPG KTAQL
Sbjct: 139 DIRRSEAYFRLHNFLIAETNNGSISRQEVVSMVPPLVLDVKPSHKVLDMCAAPGSKTAQL 198

Query: 260 IVSGA---------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------- 302
           I              V A DV   R   L     RL+     I   D+            
Sbjct: 199 IEMIHADEENPPEGFVIANDVDNNRCYMLVHQAKRLNSPNILITNHDSSIMPNFMITKSD 258

Query: 303 ---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +L D PCS  GT+R++PD+       +       Q ++  +G+  +  GG
Sbjct: 259 GTKDTLKFDRILADVPCSGDGTMRKNPDIWCKWSPANGSNLHGIQYRIAKRGLELLAVGG 318

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL-------------------------- 393
            +V+S CSL+  ++E V+ ++L  +   V+L+                            
Sbjct: 319 RMVYSTCSLNPIENEAVLHRLLCETEDSVQLIDCRDLVPGLICDPGVTHWKPASKNLQYY 378

Query: 394 ---------------NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                             +    + A     E  +RI P   +          GFF   L
Sbjct: 379 DSWEDVPEQWQTQVRPKMFPPDANEASKFHLEHCMRILPHHQD--------TGGFFVAVL 430

Query: 439 RRL 441
            ++
Sbjct: 431 EKV 433


>gi|240147383|ref|ZP_04745984.1| putative rRNA methylase [Roseburia intestinalis L1-82]
 gi|257200425|gb|EEU98709.1| putative rRNA methylase [Roseburia intestinalis L1-82]
          Length = 572

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 128/362 (35%), Gaps = 31/362 (8%)

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
                  +R   +     +         LL++   I ++P+ F  R+E+  G E    + 
Sbjct: 43  ILCSCMGSRILLRKTRREILCSCMGSRILLRKTRRIKMLPQAFLNRMESMLGNEYPAFLE 102

Query: 170 DACISPLY-IDLT-VKFDIETWAHKLNAVMLPTGGI---RLKELPESIVSLPGFAEGVWW 224
                    + L  +K D      K+   + P          E  ++    P    GV++
Sbjct: 103 SYDKDKYQALRLNSIKGDTAQMKEKVPFSLQPVAWAKDGFYYEKDDTPGKHPLHEAGVYY 162

Query: 225 VQDASASIPVQLFG----------TLNNLSVLDLCAAPGGKTAQ------------LIVS 262
           +Q+ SA  PV                    +LDLCAAPGGK+ Q                
Sbjct: 163 IQEPSAMAPVSYLMEDYDVVQKEAADCQERILDLCAAPGGKSTQIAARMHEMYTSGKWKE 222

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320
              +   ++   R + L  N++R+ +    +            +  F  +LVDAPCS  G
Sbjct: 223 QGLLICNEIHPARAKILSENVERMGIANAMVTNESPQRLAEVFEDYFTRILVDAPCSGEG 282

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++         +++   A  Q  +L    S + PGG +V+S C+    ++E  + + 
Sbjct: 283 MFRKNEAACEEWSPENVSLCAERQDGILDCAASMLAPGGRIVYSTCTFAPAENEGSMTRF 342

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFAVAL 438
           L   P    +    +    +     A   E   ++ P++ +  ++       +G +   L
Sbjct: 343 LLRHPEFRIVEVKKADGMSAGVPEWAYFREKMGQVLPEIAQTIRLWPQHLNGEGHYLAVL 402

Query: 439 RR 440
            +
Sbjct: 403 EK 404


>gi|55821033|ref|YP_139475.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55737018|gb|AAV60660.1| rRNA methyltransferase, putative [Streptococcus thermophilus LMG
           18311]
          Length = 446

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 110/316 (34%), Gaps = 25/316 (7%)

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
           +            P  F E+ ++  G E     +            V         K   
Sbjct: 1   MVQFFDRKETMKFPSDFIEKYKDLLGAEAEEFFTSFDQEA------VSAYRINPLKKQQK 54

Query: 196 VMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                           I       A G+ + Q+ +A +  Q+        VLDL AAPGG
Sbjct: 55  DYPDPIPGTPWGYYGKISGKSSDHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGG 114

Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDA 309
           K+      + +   + + ++   R + L  NL+R       +     D      K  FD 
Sbjct: 115 KSTHLLSYVDNTGLLVSNEIDFTRSKVLVENLERFGAKNVVVNHTSADKLAEVFKNYFDM 174

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           ++ D PCS  G  R+ PD +     D   + A  Q+ +L  G+  + PGG +V+S C+  
Sbjct: 175 IVFDGPCSGEGMFRKDPDAIQYWHKDYPSELAQLQKDILADGLKMLAPGGQLVYSTCTWS 234

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
            +++E VV  +L + P  +ELV +      S  +    +     R+ P   +        
Sbjct: 235 PEENEGVVAWILENYP-DLELVAIPKLSGMSDGIDFPETA----RMYPHHFKGEGQ---- 285

Query: 430 MDGFFAVALRRLIQPK 445
               F    +    P+
Sbjct: 286 ----FVAKFQDKRMPE 297


>gi|41054371|ref|NP_956005.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Danio rerio]
 gi|28277601|gb|AAH45365.1| NOL1/NOP2/Sun domain family, member 2 [Danio rerio]
 gi|182891462|gb|AAI64568.1| Nsun2 protein [Danio rerio]
          Length = 706

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/349 (22%), Positives = 118/349 (33%), Gaps = 57/349 (16%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
             +     L+  Y KE      D         L+   D   W   L+  +L    +  K 
Sbjct: 20  HAKEILHTLKEKYFKEVQDLEVDGQKIEAPQPLSWYPDELAWHTNLSRKILRKSPLLEKF 79

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT 267
               +        G    Q+A + IP  L        +LD+CAAPG KTAQLI       
Sbjct: 80  HQFLVSETES---GNISRQEAVSMIPPLLLKIEPQHKILDMCAAPGSKTAQLIEMLHSDM 136

Query: 268 ----------ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307
                     A DV  +R   L     RL+     ++  DA                  +
Sbjct: 137 DVPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLHFDNNGKKDILFY 196

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS  GT+R++ DV     T + +     Q ++ ++G+  +  GG +V+S CS
Sbjct: 197 DRILCDVPCSGDGTMRKNIDVWKKWTTSNSLHLHGLQLRIAVRGVEQLAVGGRMVYSTCS 256

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI--------- 413
           L+  + E V+  +L  S   +EL   +           I     ++ EG           
Sbjct: 257 LNPIEDEAVIAALLEKSEGSLELADASPDLPGLKYMPGITSWKVMTKEGQWFSNFSEVPT 316

Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI 442
               +I P M                  +I        GFF   L +  
Sbjct: 317 SRHTQIRPTMFPPSDSEKLTEMRLERCVRILPHHQNTGGFFVAVLVKKA 365


>gi|330444089|ref|YP_004377075.1| RNA methyltransferase [Chlamydophila pecorum E58]
 gi|328807199|gb|AEB41372.1| RNA methyltransferase [Chlamydophila pecorum E58]
          Length = 358

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 129/421 (30%), Gaps = 75/421 (17%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR--KKY 80
             ++    + +     R L  +D+  +R IV +T+R    ++ ++        P+     
Sbjct: 7   SPISEADRVAFYCQQHRALGAKDRKWLRNIVFLTMRHRRLLEFLIFRSGEKPSPQSLVAK 66

Query: 81  SLQQLLR-VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             + +L  +   Q    ++       ++ + A+    +                      
Sbjct: 67  IEEGVLEDLEAYQ----EIPWPVRYSISDDLARILVRD---------------------- 100

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199
                     E   +RL   +  E  + +          +L       +   +L    L 
Sbjct: 101 --------FGELEAQRLARVWLTEAPITVRVNTQKTSVGELQKILGYPSSPGELVPEALH 152

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
                       + S P F +G++ +QD  +              VLD CA  GGK+   
Sbjct: 153 FDQRY------PLQSTPAFKQGLFELQDEHSQYLALGIPMAKTECVLDFCAGAGGKSLIF 206

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319
                 V   D  ++ L+K +  L R       +                V+VDAPCS  
Sbjct: 207 AQKAKHVVLHDSRRKVLQKAKSRLLRAGARNFSLQLAQENLRQESFAT--VVVDAPCSGC 264

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  RRHP+  W      +      QR++L     +V+  G +V+  CS+ K ++E     
Sbjct: 265 GIFRRHPEKKWQFSERLLKNYCRVQREILACAAQYVRRHGRLVYLTCSILKAENEHQCAY 324

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +                      +         +R+               DGFFA   R
Sbjct: 325 M--------------------RSLGWKEEKRISLRL----------EVGKGDGFFAAYFR 354

Query: 440 R 440
           +
Sbjct: 355 K 355


>gi|302670992|ref|YP_003830952.1| RNA methylase NOL1/NOP2/sun family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395465|gb|ADL34370.1| RNA methylase NOL1/NOP2/sun family [Butyrivibrio proteoclasticus
           B316]
          Length = 505

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 100/268 (37%), Gaps = 34/268 (12%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                    E   +    P    G++++Q+ SA  PV          +LDLCAAPGGK+ 
Sbjct: 74  PWEKNGYYYEGDVAPGKSPYHEAGLYYIQEPSAMAPVHYLDPKPGEKILDLCAAPGGKST 133

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLV 312
           Q    +     +   ++++ R   L  N++RL +    ++     +     +  FD +LV
Sbjct: 134 QIAVRMGGSGILVTNEINRDRARILSLNIERLGITNALVLNETPENLANVFEGYFDKILV 193

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R++ +       +++      Q+++L      + PGG +VFS C+    +
Sbjct: 194 DAPCSGEGMFRKNENASSEWSPENVELCGIRQKEILDAASRMLLPGGRLVFSTCTFAPTE 253

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP--------------------EGW 412
           +EE + + L   P    +  +          +  +S                        
Sbjct: 254 NEESICRFLSGHP-DYHVADIQMFDGMDHGRSEWISDKCIQACGLSQEQESSIRAEVNKS 312

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +R+ P  L           G F   L R
Sbjct: 313 VRLWPHKLRGE--------GHFLCVLER 332


>gi|119913400|ref|XP_594174.3| PREDICTED: NOP2/Sun domain family, member 2 [Bos taurus]
          Length = 782

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 54/274 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 162 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 221

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            RR   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 222 NRRCYLLVHQAKRLGSPCIMVVNHDASCIPRLQVDVNGRKEILFYDRILCDVPCSGDGTM 281

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV       + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 282 RKNVDVWKKWSALNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 341

Query: 383 SSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S      +   +     ++ +G               +I P M     
Sbjct: 342 KSEGALELADVSSELPGLKWVPGLSQWKVMTKDGQWFTSWDDVPHNRHTQIRPTMFPPKD 401

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI 442
                        +I        GFF   L +  
Sbjct: 402 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKA 435


>gi|50311247|ref|XP_455648.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644784|emb|CAG98356.1| KLLA0F12562p [Kluyveromyces lactis]
          Length = 704

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 126/361 (34%), Gaps = 50/361 (13%)

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
            ++  + ++ L  RI G     +   +  +  +         +  +    + L    +  
Sbjct: 55  FKKTCQSQLPLTFRITGSRKHSKEVLQLFQEHHLPNLTNVTWENEVVKPPMALPWYPEHL 114

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
            W   ++  ++       +     +V     A G    Q+A + IP  +     +  VLD
Sbjct: 115 GWQLDVSKSVIRKNEQFARMQRFLVVEN---AVGNISRQEAVSMIPPIVLDVKPHHYVLD 171

Query: 248 LCAAPGGKTAQ--------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           +CAAPG KTAQ               V A D   +R   L   L RL+     ++  DA 
Sbjct: 172 MCAAPGSKTAQLIEALHAESDEPSGFVIANDADYKRSHMLVHQLKRLNSANLMVVNHDAQ 231

Query: 300 DYC-------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +                  FD VL D PCS  GT+R++ +V    +T   +     Q  
Sbjct: 232 FFPRIKVDSTEGSKGPQFLKFDRVLCDVPCSGDGTMRKNVNVWKDWNTGSGLGLHIVQLN 291

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI----- 401
           +L +G++ +K GG +V+S CSL+  ++E V+   LR     V LV  +      +     
Sbjct: 292 ILERGLNLLKEGGKLVYSTCSLNPIENEAVIAAALRRWGDKVRLVNCDDQLPGLVRSKGI 351

Query: 402 ---------------------DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                D     + E   +   +   ++        GFF     +
Sbjct: 352 TEWKVYDKQFQVREKGHENCLDSWFPPTAEEVEKFHLENCMRVYQHQQNTGGFFITVFEK 411

Query: 441 L 441
           +
Sbjct: 412 I 412


>gi|257439633|ref|ZP_05615388.1| NOL1/NOP2/sun family protein [Faecalibacterium prausnitzii A2-165]
 gi|257197900|gb|EEU96184.1| NOL1/NOP2/sun family protein [Faecalibacterium prausnitzii A2-165]
          Length = 232

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 7/208 (3%)

Query: 243 LSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           + VLD CAAPGGK++QL  +      + + +    R E LR NL+R+ +    ++  D  
Sbjct: 1   MRVLDTCAAPGGKSSQLAAALGGQGLLVSNEFVAARAEVLRSNLERMGVPNAVVLNEDTG 60

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                    FD VLVDAPCS  G  R+    +       + + A    ++L    + + P
Sbjct: 61  RIAAALPEFFDRVLVDAPCSGEGMFRKEAVAVTQHCEALVKQCAALGAQILDNAAACLAP 120

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +++S C+   ++ E  V   L+  P    L  +      S       +  G + +  
Sbjct: 121 GGEMIYSTCTFAPEEDEGQVAAFLQRHP-EFTLADVFGNVDYSFGSPGEANRTGGLPLDV 179

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             + +I     G +G F   L +   P+
Sbjct: 180 SKVRRIWPCQGG-EGHFIARLVKAGTPR 206


>gi|198276920|ref|ZP_03209451.1| hypothetical protein BACPLE_03125 [Bacteroides plebeius DSM 17135]
 gi|198270445|gb|EDY94715.1| hypothetical protein BACPLE_03125 [Bacteroides plebeius DSM 17135]
          Length = 470

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 118/303 (38%), Gaps = 16/303 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F  R     G     A+++A      + + +  D      + +  +        
Sbjct: 1   MNLPSDFILRTRQLLGDAEFAALAEALGKDTPVSIRMNTDKSDLVPQESTAVPWCREGYY 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI--- 260
                S    P F  G ++VQ+AS+    Q         +++LDLCAAPGGK+       
Sbjct: 61  LSGRPSFTFDPLFHAGCYYVQEASSMFLEQALRQYVHEPVTMLDLCAAPGGKSTLARSVL 120

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSST 319
             G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS  
Sbjct: 121 PEGSLLVANEVMRNRSQVLAENLIKWGNSGVIVTNNDPADFTELGPLFDVILTDVPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+    +     +++      QR++L      +K GG++V+S C+ +++++E+ V  
Sbjct: 181 GMFRKDEVAVQEWSIENVDTCWQRQRRILRDIWPCLKTGGLLVYSTCTYNREENEDNVAW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           + +   +  E++PL       I   +  +     R  P              G F   L+
Sbjct: 241 IAQE--LGAEVLPLEMQPDWHITGNLTGTEFPVYRFLPHKTTGE--------GLFLAVLQ 290

Query: 440 RLI 442
           +  
Sbjct: 291 KTA 293


>gi|317122734|ref|YP_004102737.1| RNA methylase, NOL1/NOP2/sun family [Thermaerobacter marianensis
           DSM 12885]
 gi|315592714|gb|ADU52010.1| RNA methylase, NOL1/NOP2/sun family [Thermaerobacter marianensis
           DSM 12885]
          Length = 497

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 127/310 (40%), Gaps = 25/310 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT--------VKFDIETWAHKLNAVMLP 199
           +P    ER  +          S     P  + +         ++  +E    +L      
Sbjct: 1   MPATVFERYRSIIDDWDAFQASLIRPQPAALRVNRLKADPAALRARLEERGFRLEPYDWY 60

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
               R+ E P S         G +++Q+A+A++PV         +VLDL AAPGGK+ Q+
Sbjct: 61  PDLWRVAEEPFSPALTLEHWLGRFYLQEAAAAVPVLALDPQPGETVLDLSAAPGGKSTQM 120

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316
              + +   V A D   RRL  L  NL RL + +  I   D   +     FD VLVDAPC
Sbjct: 121 AERMGNRGMVVANDPDPRRLAALSHNLQRLGVTSAVITRADGRQFPGGLAFDRVLVDAPC 180

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S+ G  RR              +    Q  LL + ++ V+PGG+VV+S C+   +++E V
Sbjct: 181 SAEGNARRSARARQGVGRHQRRRLPAVQLALLRRALALVRPGGVVVYSTCTFAPEENEAV 240

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------EGWIRITPDMLEKIDGVSSGM 430
           V +VLR++   V + PL  A      +            E   RI P  L+         
Sbjct: 241 VDQVLRAAEGSVTVEPLPPALPGVAGVTAWEGQRFRPEVEACRRIYPHHLDSG------- 293

Query: 431 DGFFAVALRR 440
            G F   LR+
Sbjct: 294 -GMFVARLRK 302


>gi|6319447|ref|NP_009529.1| Ncl1p [Saccharomyces cerevisiae S288c]
 gi|586408|sp|P38205|NCL1_YEAST RecName: Full=tRNA (cytosine-5-)-methyltransferase NCL1; AltName:
           Full=Multisite-specific tRNA:m5C-methyltransferase;
           AltName: Full=tRNA methyltransferase 4
 gi|536023|emb|CAA84843.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|602895|emb|CAA54502.1| homolog of human proliferating-cell nucleolar protein p120
           [Saccharomyces cerevisiae]
 gi|285810311|tpg|DAA07096.1| TPA: Ncl1p [Saccharomyces cerevisiae S288c]
          Length = 684

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 130/396 (32%), Gaps = 65/396 (16%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +  K  K    F +      ++  +  + L  RI G            +  
Sbjct: 27  WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +       ++L    D   W   +   ++       K     +V     A
Sbjct: 87  HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V A D 
Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +                 FD +L D PCS  
Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E VV +
Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323

Query: 380 VLRSSPIPVELVPLNSAYW----------------------------------KSIDMAM 405
            LR     + LV  +                                       S + A 
Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFSPSEEEAS 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +R+ P              GFF     ++
Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411


>gi|225868633|ref|YP_002744581.1| NOL1/NOP2/sun family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701909|emb|CAW99416.1| NOL1/NOP2/sun family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 435

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 18/222 (8%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
            + Q+ +A +  Q+        VLDL AAPGGK+ Q    + +   + + ++S +R + L
Sbjct: 73  VYSQEPAAQMVAQVASPAKGTRVLDLAAAPGGKSTQLLAYLENTGLLVSNEISTKRSKAL 132

Query: 280 RCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R       +     D       + FD ++ D PCS  G  R+ P+ +     D  
Sbjct: 133 VENIERFGARNVIVTNESADRLAAVFPEYFDTIVFDGPCSGEGMFRKDPNAMSYWHKDYP 192

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
              A  QR +L + I  +KPGG +++S C+   +++EEVV+ +L S    +EL  +    
Sbjct: 193 AACASLQRSILAEAIPMLKPGGQLIYSTCTWSPEENEEVVRWLLESY-DFLELEHIPKIN 251

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             S  + M  +     R+ P   +            F   L+
Sbjct: 252 GMSEGIGMPQAA----RMYPHRFKGEGQ--------FVAKLK 281


>gi|319957197|ref|YP_004168460.1| RNA methylase, nol1/nop2/sun family [Nitratifractor salsuginis DSM
           16511]
 gi|319419601|gb|ADV46711.1| RNA methylase, NOL1/NOP2/sun family [Nitratifractor salsuginis DSM
           16511]
          Length = 319

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 15/302 (4%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL-- 205
            P    ER+   +   +        +      L    ++E+   ++ AV    G  RL  
Sbjct: 22  FPPHIYERVLQSFSSPKTTTFRVNPLKTDASSLQK--ELESLGFEIEAVDWLPGAFRLLD 79

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
            +   ++     F EG  ++Q+ S+ +   +        VLDL AAPGGKT  +   + +
Sbjct: 80  PDQRRALTESGAFYEGRLYIQNLSSMLAPLILAPRPEEQVLDLAAAPGGKTLMMAGMMEN 139

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              ++A++  K R  +L+ N++            D           FD VL+DAPCSS  
Sbjct: 140 RGWISAVEPVKERFHRLKRNIENAGAEIVHTYMKDGRSVGRACPAMFDRVLLDAPCSSEA 199

Query: 321 TIRR-HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
                +P          + +S   Q++L+L     ++PGG +++S CS   +++E VV  
Sbjct: 200 KFSTLNPKSYAYWSPRKVKESQRLQKRLILSAWQSLRPGGRLLYSTCSFAPEENEAVVDH 259

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE-KIDGVSSGMDGFFAVAL 438
           +L  +P   +L+P+       ++  +    +   R  P++   +    +  MDGFF   +
Sbjct: 260 LLGKAP-DAKLLPIELPIDNQMEGLVGWEKK---RFAPELERARRVLPTEEMDGFFLALI 315

Query: 439 RR 440
            +
Sbjct: 316 EK 317


>gi|207347840|gb|EDZ73889.1| YBL024Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 634

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +  K  K    F +      ++  +  + L  RI G            +  
Sbjct: 27  WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +       ++L    D   W   +   ++       K     +V     A
Sbjct: 87  HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V A D 
Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +                 FD +L D PCS  
Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E VV +
Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323

Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405
            LR     + LV                                   L+S +  S + A 
Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +R+ P              GFF     ++
Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411


>gi|332796458|ref|YP_004457958.1| RNA methylase, NOL1/NOP2/sun family [Acidianus hospitalis W1]
 gi|332694193|gb|AEE93660.1| RNA methylase, NOL1/NOP2/sun family [Acidianus hospitalis W1]
          Length = 335

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 130/316 (41%), Gaps = 26/316 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDA---------CISPLYIDLTVKFDIETWAHKL 193
           +      ++  ER  + +  E    +            C +       ++  +E    KL
Sbjct: 27  SRKYGFLDYMVERYLHIFRHEAEDFLYSCNFPLKKSIRCNTLKIDCNELESRMEQKGFKL 86

Query: 194 NAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
             V     G  +K+ P   S+ +   + +G +++Q  ++ +P  +    ++ +VLD+ AA
Sbjct: 87  EKVSWLKHGYIVKKAPPKPSLGATLEYLQGYYYIQGLASMVPAYVLNPSSSDTVLDMAAA 146

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LF 307
           PGGKT Q   ++ +   + A++ S+ R+  L  N+ RL +    ++  D          F
Sbjct: 147 PGGKTTQLSQIMNNEGLIVAVEKSRLRVTSLLSNISRLGVRNVLLLRSDVRTLEKTTLSF 206

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L+DAPCS  G I            D++ + +  Q +L+      +K GG +V+S CS
Sbjct: 207 DKILLDAPCSGEGLIPEDQSRKTKTSLDELKRFSFTQLQLIYTAYKLLKKGGELVYSTCS 266

Query: 368 LDKQDSEEVVQKVLRSSPIPVELV---PLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
           +  ++ E +V   +    +    +   P  +   +   ++        IR  P       
Sbjct: 267 IAPEEDEMIVNFAIEELGMKAIKISGYPAENGIVEYNGVSFNEEVSNCIRFYPH------ 320

Query: 425 GVSSGMDGFFAVALRR 440
              +G +GFF   L++
Sbjct: 321 --KNGTEGFFICHLKK 334


>gi|322784282|gb|EFZ11287.1| hypothetical protein SINV_03590 [Solenopsis invicta]
          Length = 718

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 113/323 (34%), Gaps = 52/323 (16%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           ++    +   L    +   W  +L    +       +     I        G    Q+  
Sbjct: 112 NSQTKTILHSLPFYPEELAWQLQLTRKDIRRSEAYFRLHNFLIAET---NNGSISRQEVV 168

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVSKRRLEKL 279
           + +P  +     +  VLD+CAAPG KTAQLI               V A D+   R   L
Sbjct: 169 SMVPPLVLNVKPSHKVLDMCAAPGSKTAQLIEMIHADEGNDPPEGFVIANDLDNTRCYML 228

Query: 280 RCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDV 328
                RL+     I   DA                   FD +L D PCS  GT+R++PD+
Sbjct: 229 VHQAKRLNSPNILITNHDASVMPNFMITKPDGTKDILKFDRILADVPCSGDGTMRKNPDI 288

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                  +       Q ++  +G+  +  GG +V+S CSL+  ++E V+ ++L  +   V
Sbjct: 289 WCKWSPANGNNLHGVQYRIAKRGLELLTVGGRMVYSTCSLNPIENEAVLHRLLCETNDSV 348

Query: 389 ELVPLNSAYWKSI-----------------DMAMALSPEGWI-RITPDMLE--------- 421
           +LV         +                   +    PE W  ++ P M           
Sbjct: 349 QLVDCRDLVPGLLCDSGITHWKPTSKNLQYYNSWDDVPEQWQTQVRPKMFPPEANEASNM 408

Query: 422 KIDGVSSGMDGFFAVALRRLIQP 444
           +I        GFF   L ++ +P
Sbjct: 409 RILPHHQDTGGFFVAVLEKV-KP 430


>gi|170593001|ref|XP_001901253.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
 gi|158591320|gb|EDP29933.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
          Length = 1209

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 131/391 (33%), Gaps = 81/391 (20%)

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
            N  +   S+  ++  +  A I+ + +                ++ +   S  +  +   
Sbjct: 35  ENFCIYYKSQGIVKDDEWDAFIAALKDDLPTSFRIQGSSNEAQSLIELMNSHYFEPMKQW 94

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQDASASI 232
            D +T+  K   +       +      ++ S P                    Q+A + I
Sbjct: 95  EDGDTFIPK--QLSWHPYAFQTPISRATLRSRPLLKNFHNFLITEAELGNISRQEAVSMI 152

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEK-LRCNL 283
           P  L    ++  +LD+CAAPG KT Q+I               A DV   R    +   L
Sbjct: 153 PPLLLDIKSHHKILDVCAAPGSKTTQIIEMMHCDDKIPEGLIVANDVDNSRCYLLVHQAL 212

Query: 284 DRLHLYAEDIIEMDAFDYC---------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
            R+      +I  +A                LFD VL D  CS  GT R+ PD+  + + 
Sbjct: 213 KRMPTSNCIVINENAAFLPNLLIDKETSEPLLFDRVLCDVICSGDGTFRKSPDMWQSWNP 272

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL- 393
              +     Q  +  + +  +   G++V+S CSL+  ++E V+  +LRS+   +EL+ + 
Sbjct: 273 VKGLGLHKLQINIAQRAVQLLAVDGLMVYSTCSLNPIENEAVIASLLRSNAGALELIDVS 332

Query: 394 ----------------------------------------NSAYWKSIDMAMALSPEGWI 413
                                                   +S +  + D       E   
Sbjct: 333 QQLPQLKRMSGLSKWRVFDKAMREYSILEDVIADQRRYFTSSMFPPNDDEIRNFHLERCF 392

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           RI P +            GFF   LR+L +P
Sbjct: 393 RILPHLQ--------NTGGFFVAVLRKL-KP 414


>gi|323349882|gb|EGA84095.1| Ncl1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 682

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +  K  K    F +      ++  +  + L  RI G            +  
Sbjct: 27  WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +       ++L    D   W   +   ++       K     +V     A
Sbjct: 87  HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V A D 
Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +                 FD +L D PCS  
Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E VV +
Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEXVVAE 323

Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405
            LR     + LV                                   L+S +  S + A 
Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +R+ P              GFF     ++
Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411


>gi|322372966|ref|ZP_08047502.1| NOL1/NOP2/sun family protein [Streptococcus sp. C150]
 gi|321278008|gb|EFX55077.1| NOL1/NOP2/sun family protein [Streptococcus sp. C150]
          Length = 446

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 117/317 (36%), Gaps = 25/317 (7%)

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
           +            P  F E+  N  GKE       +               +   +  +A
Sbjct: 1   MVQFFNRKETMEFPLDFVEKYTNLLGKE-ADNFFASFDQEAVSAYRTNPLKKQQKNYPDA 59

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
           +     G   K            A G+ + Q+ +A +  Q+        VLDL AAPGGK
Sbjct: 60  IPETPWGHYGKIS----GKSSDHATGLVYSQEPAAQMVAQVAAPTKGSRVLDLAAAPGGK 115

Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAV 310
           +      + +   + + +++ +R + L  N++R       +     D      K  FD +
Sbjct: 116 STHLLSYLDNTGLLVSNEINPKRSKILVENIERFGARNVVVTNTSADKLAKVFKNYFDTI 175

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           + D PCS  G  R+ PD +     D   + A  Q+ +L  G+  + PGG +++S C+   
Sbjct: 176 VFDGPCSGEGMFRKDPDAIQYWHKDYPSELAQLQKDILTDGLKMLAPGGQLIYSTCTWSP 235

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           +++E VV  +L + P  +ELV +         +    +     R+ P   +         
Sbjct: 236 EENEGVVSWILENYP-DLELVDIPKQNGMCHGINFPETA----RMYPHHFKGEGQ----- 285

Query: 431 DGFFAVAL--RRLIQPK 445
              F      +RL + K
Sbjct: 286 ---FVAKFQDQRLTEQK 299


>gi|317503695|ref|ZP_07961712.1| NOL1/NOP2/sun family protein [Prevotella salivae DSM 15606]
 gi|315665216|gb|EFV04866.1| NOL1/NOP2/sun family protein [Prevotella salivae DSM 15606]
          Length = 428

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 111/305 (36%), Gaps = 21/305 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPTG 201
             +P+ F        G+    A  +A    + + + +        +         +    
Sbjct: 1   MKLPKEFTAYTRELMGETCFTAFENAMNEDVPVSIRLNPFKLDSTQVSIKDKETDVPWCR 60

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQL 259
                +   +    P F +G+++VQ+ ++     +        + +LDLCA+PGGK+   
Sbjct: 61  DAMFLKSRPNFTFDPFFHQGLYYVQETASMFVAHVIREVVKRPIRMLDLCASPGGKSTCS 120

Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAP 315
                +G+ + + +  ++R   L  N+ +  +    +           +  FD +L D P
Sbjct: 121 YAALPAGSMLFSNEPIRQRANILNENILKFGVPDIVVTNNYARDYQQSRLQFDVILTDVP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+    +       + + A  Q +++      +KPGG++++S C+ +  ++EE
Sbjct: 181 CSGEGMFRKDAGAIDDWSVKKVEECARLQCEIVHDIWPCLKPGGVLIYSTCTFNAHENEE 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            V  + +        +P   A+  +      +      R  P              G F 
Sbjct: 241 NVAWIAKELGADFIEIPTEKAWNIT---GSLVDEHPVYRFIPGRTRGE--------GLFM 289

Query: 436 VALRR 440
             LR+
Sbjct: 290 AVLRK 294


>gi|163752559|ref|ZP_02159743.1| NOL1/NOP2/sun family protein [Shewanella benthica KT99]
 gi|161327555|gb|EDP98755.1| NOL1/NOP2/sun family protein [Shewanella benthica KT99]
          Length = 491

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 27/265 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAP 252
               G     +    + +     +G++++Q+AS+ +P     +     +N ++LD+ AAP
Sbjct: 78  WCSDGFWISLDSEVQLGNTIEHLQGLFYIQEASSMLPPTALFSQLNETDNATILDMAAAP 137

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLF 307
           G KT QL   + +   + A + S  R++ L  N+ R+ +    +   DA  +       F
Sbjct: 138 GSKTTQLAALMNNSGLLIANEYSSSRVKVLHANVQRMGVSNTALTHFDARVFGEYLYATF 197

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           DA+L+DAPCS  GTIR+ P  L     +        Q+ L+      +K GGI+V+S C+
Sbjct: 198 DAILLDAPCSGEGTIRKDPAALKNWSLESSRSIVATQKALIESAFLALKTGGILVYSTCA 257

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L + +++EV Q +    P  VE   L   +   ID   A + EG++ + P + +      
Sbjct: 258 LSRVENQEVCQHLKEMYPDAVEFESLRDLF---IDADKACTEEGFLHVWPQIYDSE---- 310

Query: 428 SGMDGFFAVALRR-------LIQPK 445
               GFF   +R+       + +P+
Sbjct: 311 ----GFFVAKIRKTADIDRQVAEPR 331


>gi|330833874|ref|YP_004408602.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera cuprina Ar-4]
 gi|329566013|gb|AEB94118.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera cuprina Ar-4]
          Length = 336

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 137/338 (40%), Gaps = 26/338 (7%)

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAISDACISPLYI 178
           + L N+     S E  + +  +A      E+  ER  +F     E  L+     +     
Sbjct: 6   SYLKNNEASLYSYEIEDGITELAKKYGFLEYMIERYIHFLGSKTEEFLSSCTFPLRKAIR 65

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWVQDAS 229
             ++K D +T +  L         I   +    +   P          + +G +++Q  +
Sbjct: 66  CNSLKIDCKTLSENLENKGFTLSRIEWSKFGYRVEKSPSTPSIGSTIEYMKGQYYIQGEA 125

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + IP +         VLD+ ++PGGKT  +   + +   + AL+ +  RL+K+R N+ RL
Sbjct: 126 SMIPPEALSPKEGELVLDMASSPGGKTTHIAQLMNNSGSIIALESNPARLKKIRSNIARL 185

Query: 287 HLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
            +    ++ +   +       FD +L+DAPCS  G I            DD+ +    Q 
Sbjct: 186 GVTNVILLLLRGEEVSKLGLTFDKILLDAPCSGEGLIPIDKTRKTKTLPDDLKRFQRTQL 245

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV---PLNSAYWKSID 402
            LL+ G   +K  G++V+S CS+  ++ E +V   ++   +  E++   P          
Sbjct: 246 NLLVTGYKVLKKNGLMVYSTCSIAPEEDEVIVNFAIKYLGMRAEMITGFPGERGLSSYKG 305

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  +   +  +R  P   +        M+GFF   LR+
Sbjct: 306 IEFSEGIQNCLRTYPHTQK--------MEGFFVCLLRK 335


>gi|213405086|ref|XP_002173315.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001362|gb|EEB07022.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 682

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 133/400 (33%), Gaps = 68/400 (17%)

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
            +    +    ++   +    +L    ++++    RI+G        K+  E +Y  +  
Sbjct: 30  ESYYAVQNLFAHKESPEQEYKLLIEFMKKQLPTTFRISGFRKHAVELKKHFEKYYVPDLQ 89

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
               +    P    L+   D   +        +       +     +        G    
Sbjct: 90  NVTYEGQNIPPPQVLSWYPDDLAYMIDARKETIRKSPPLKRLQRFLVCETEA---GNISR 146

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--------------------IVSGAK 265
           Q+A + +P        +  VLD+CAAPG KTAQL                          
Sbjct: 147 QEAVSMLPPLFLDFEPHHVVLDMCAAPGSKTAQLIEAIYKGANVIDATKDSAKLHNISGL 206

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVL 311
           V A D   +R + L   ++RL+     +I  DA                      FD +L
Sbjct: 207 VIANDADPKRAQMLVHQINRLNSPNVLVINHDASQMPNIYVEKKEAADGEKEILKFDRIL 266

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT R++  +         +     Q K+L++G+  +K GG++ +S CS++  
Sbjct: 267 ADVPCSGDGTFRKNLMLWKEWSQSSALTLHNLQLKILMRGLQMLKVGGVLAYSTCSMNPI 326

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA--------------------MALSPEG 411
           ++E VV   L+S    V+L+ ++    + +                        A + + 
Sbjct: 327 ENESVVAAALKSCGGSVQLLDVSDKMPELLREPGLCNWKVMDEQLKQYAEYNDDAKAAKL 386

Query: 412 WIRITP-----------DMLEKIDGVSSGMDGFFAVALRR 440
              + P           +   ++        GFF   L++
Sbjct: 387 CPTMWPLPINEMKEYHMERCVRLYPQLQNTGGFFIALLQK 426


>gi|323261753|gb|EGA45324.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
          Length = 337

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+LL      ++PG
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDNAFHALRPG 273

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
           G +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P 
Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330

Query: 419 MLEKID 424
           + +   
Sbjct: 331 IYDCEG 336


>gi|329942384|ref|ZP_08291194.1| NOL1/NOP2/sun family protein [Chlamydophila psittaci Cal10]
 gi|332287026|ref|YP_004421927.1| NOL1/NOP2/sun family protein [Chlamydophila psittaci 6BC]
 gi|313847622|emb|CBY16610.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325506907|gb|ADZ18545.1| NOL1/NOP2/sun family protein [Chlamydophila psittaci 6BC]
 gi|328815294|gb|EGF85282.1| NOL1/NOP2/sun family protein [Chlamydophila psittaci Cal10]
 gi|328914257|gb|AEB55090.1| NOL1/NOP2/sun family protein, putative [Chlamydophila psittaci 6BC]
          Length = 371

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 133/424 (31%), Gaps = 82/424 (19%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
             +  +  +       R L  +D+  + A V   LR    ++A++               
Sbjct: 19  TPIGEVNRVALYFKQHRSLGSKDRQWISARVFAILRHRRLLEALIQR------------- 65

Query: 83  QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142
                         ++    +V    E A                   +   +       
Sbjct: 66  -----------DNQEITPETLVAKVEEGA-------------------LDDIEKYHDLPW 95

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
                + +     L   YG+ER   +++  +      + V     +       +  P+  
Sbjct: 96  PVKYSVSDDLATCLTEDYGQERAKELAEIFLKEAPCTIRVNTRRTSVEDLQKCLEYPSEL 155

Query: 203 IRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
             +           +     F  G++ VQD S+              +LD CA  GGK+ 
Sbjct: 156 GSVPGALRFAKRYPLQHSAAFHRGLFEVQDESSQKITLDIPISKKDRILDFCAGAGGKSL 215

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
                   V   D  K  LE+ +  L R       I E        K  F  V+VDAPC+
Sbjct: 216 IFAERAHHVVLHDSRKDILEEAKQRLRRAGFRNFSIGEQHLR----KNSFSIVVVDAPCT 271

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
            TG  RRHP+         +   +C QRK+L   + +VKPGG +V+  CSL  +++E+ V
Sbjct: 272 GTGVYRRHPEKKSQFSRKLLTTFSCVQRKILRDAVRYVKPGGKLVYITCSLLSEENEKQV 331

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
                          +NS  W+                    +       SG DGFF+  
Sbjct: 332 AF-------------MNSLGWEEA----------------HRMHTTLSPESG-DGFFSAH 361

Query: 438 LRRL 441
             R 
Sbjct: 362 FVRK 365


>gi|151946371|gb|EDN64593.1| m5C tRNA methyltransferase [Saccharomyces cerevisiae YJM789]
          Length = 682

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +  K  K    F +      ++  +  + L  RI G            +  
Sbjct: 27  WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +       ++L    D   W   +   ++       K     +V     A
Sbjct: 87  HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V A D 
Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +                 FD +L D PCS  
Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E VV +
Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENESVVAE 323

Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405
            LR     + LV                                   L+S +  S + A 
Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +R+ P              GFF     ++
Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411


>gi|213401679|ref|XP_002171612.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Schizosaccharomyces
           japonicus yFS275]
 gi|211999659|gb|EEB05319.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 654

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 99/286 (34%), Gaps = 64/286 (22%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV------------ 266
             G    Q+A + IP        +  VLD+CAAPG KTAQLI +  +             
Sbjct: 95  ECGDISRQEAVSMIPPLFLDVKPHHKVLDMCAAPGSKTAQLIEALHRDSNVESPEKDIVP 154

Query: 267 ----TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK---------------LF 307
                A D   RR   L   + RL+     I   DA                       F
Sbjct: 155 SGLVIANDADSRRAHMLVHQIKRLNSPNVVITNHDASYMPNFHMMTEGKTGEAKRVNLKF 214

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS  GT R++  +         +     Q K+LL+G+  +  GG +V+S CS
Sbjct: 215 DRILADVPCSGDGTFRKNISLWKEWTLKTALGLHATQVKILLRGLQMLATGGRLVYSTCS 274

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS---PEGWI----------- 413
           ++  ++E VV  +L+++   V LV  +      +           +G +           
Sbjct: 275 MNPIENEAVVSAILKATEGSVRLVDTSKELPSLVRNPGVFDWKVMDGDLNEYKSFEELPS 334

Query: 414 --------RITP-----------DMLEKIDGVSSGMDGFFAVALRR 440
                    + P           +   ++        GFF   L +
Sbjct: 335 NLIQRMPKTLWPLPKSELERLHIERCMRVYPHQQNTGGFFVAVLEK 380


>gi|294141339|ref|YP_003557317.1| NOL1/NOP2/sun family protein [Shewanella violacea DSS12]
 gi|293327808|dbj|BAJ02539.1| NOL1/NOP2/sun family protein [Shewanella violacea DSS12]
          Length = 478

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 20/255 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAP 252
               G     +    + +     +G++++Q+AS+ +P     +      N+++LD+ +AP
Sbjct: 65  WCSDGFWISLDSEVQLGNTIEHLQGLFYIQEASSMLPPTALFSQLNETANVTILDMASAP 124

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLF 307
           G KT QL   + +   + A + S  R++ L  N+ R+ +    +   DA  +       F
Sbjct: 125 GSKTTQLAALMNNSGLLIANEYSSSRVKVLHANVQRMGVTNTALTHFDARVFGEYLYDTF 184

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           DA+L+DAPCS  GTIR+ P  L              Q+ L+      +K GG +V+S C+
Sbjct: 185 DAILLDAPCSGEGTIRKDPSALKNWSLKSSQAIVATQKALIESAFLALKTGGTLVYSTCA 244

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L + +++EV Q +    P  VE   L+  +   ID   A + EG++ + P + +      
Sbjct: 245 LSRFENQEVCQHLQAIYPDAVEFESLSDLF---IDADKACTEEGFLHVWPQIYDSE---- 297

Query: 428 SGMDGFFAVALRRLI 442
               GFF   +R+  
Sbjct: 298 ----GFFVAKIRKTA 308


>gi|291300071|ref|YP_003511349.1| Fmu (Sun) domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290569291|gb|ADD42256.1| Fmu (Sun) domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 532

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 14/164 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R ++  +L+ V  +      +L         R +S RD      +   TLR    +DA
Sbjct: 27  NPRRIAYEVLAAVSTQDAYANLVLPKLLRH---RGVSGRDAAFATELSYGTLRRRGSLDA 83

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+      ++     S+  +LR+ V Q+LY  VA +A  +  V  A++   +R  A  VN
Sbjct: 84  VIASASGRAVSALDQSVADVLRLGVYQLLYTRVAAHAAANTTVSLARKVCGHRP-AGFVN 142

Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENF 159
           +++R+VSR  +E               A     PEW   R    
Sbjct: 143 AVMRKVSRYSLEDWLDKLSTGEELADLALRQSHPEWIVRRFAEA 186



 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 107/294 (36%), Gaps = 30/294 (10%)

Query: 158 NFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVS 214
                + ++A   A      + L  +    D    A + +  +       ++        
Sbjct: 257 AEAEPDELVAALAADNVSPAVQLCARPGLIDATELARQTDGSLGRWSAYAVELDSGDPGD 316

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKT----AQLIVSGAKV 266
           L    +G   VQD  + +             +   LDLCA PGGK     +      AK+
Sbjct: 317 LAAIRDGRAHVQDEGSQLVALALAAAPLTGRDERWLDLCAGPGGKAALLGSLAARRDAKL 376

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
           TA++V++ R   +      L     D++  D   Y     FD VLVDAPCS  G +RR P
Sbjct: 377 TAVEVAEHRARLVAETTKDL---DVDVVTADGRTYTTSDSFDRVLVDAPCSGLGALRRRP 433

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +  W R   D+      Q +LL   +  V+PGG+V +  CS    ++ E+V         
Sbjct: 434 EARWRRAESDLDGLRELQTELLASALRLVRPGGVVAYVTCSPVIAETHEIVATA-----T 488

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              LV     +   +     L     +++ P           G D  F   LRR
Sbjct: 489 GASLVDARPLFPAELP---HLGDGPTVQLWPH--------RHGTDAMFCAILRR 531


>gi|259144822|emb|CAY77761.1| Ncl1p [Saccharomyces cerevisiae EC1118]
          Length = 682

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +  K  K    F +      ++  +  + L  RI G            +  
Sbjct: 27  WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +       ++L    D   W   +   ++       K     +V     A
Sbjct: 87  HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V A D 
Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +                 FD +L D PCS  
Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E VV +
Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENESVVAE 323

Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405
            LR     + LV                                   L+S +  S + A 
Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             + +  +R+ P              GFF     ++
Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411


>gi|323356262|gb|EGA88066.1| Ncl1p [Saccharomyces cerevisiae VL3]
          Length = 664

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 133/400 (33%), Gaps = 65/400 (16%)

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155
           L      +V    +  K  K    F +      ++  +  + L  RI G           
Sbjct: 5   LKKNWSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNL 64

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215
            +  +         +       ++L    D   W   +   ++       K     +V  
Sbjct: 65  FKERHLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN 124

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVT 267
              A G    Q+A + IP  +     + +VLD+CAAPG KTAQ               V 
Sbjct: 125 ---AVGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVV 181

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAP 315
           A D   RR   L   L RL+     ++  DA  +                 FD +L D P
Sbjct: 182 ANDADARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVP 241

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  GT+R+  +V    +T   +     Q  +L +G+  +K  G +V+S CSL+  ++E 
Sbjct: 242 CSGDGTMRKXVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEA 301

Query: 376 VVQKVLRSSPIPVELVP----------------------------------LNSAYWKSI 401
           VV + LR     + LV                                   L+S +  S 
Sbjct: 302 VVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSE 361

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + A   + +  +R+ P              GFF     ++
Sbjct: 362 EEASKFNLQNCMRVYPH--------QQNTGGFFITVFEKV 393


>gi|315924869|ref|ZP_07921086.1| NOL1/NOP2/sun family protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621768|gb|EFV01732.1| NOL1/NOP2/sun family protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 467

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 22/310 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDL------TVKFDIETWAHKLNAVMLP 199
             +PE F +++    G E   A++D+     Y  +           + +        +  
Sbjct: 1   MNLPEAFSDKMRTLMGSEAFAALADSYNRSAYKGIRTNTLKMDNGRMRSLFPFETKAVPW 60

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
                            G+  G+++VQ+ +A  P +  G      VLDLCAAPGGK+ QL
Sbjct: 61  CPTGFYIGGDVRPGKQVGYYAGLYYVQEPTAMTPAEALGAEPGDRVLDLCAAPGGKSTQL 120

Query: 260 IVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDA 314
                    + + ++ K R   L  N++R+ +    I+    D         F+ +LVDA
Sbjct: 121 ACKLNGRGVLISNEIVKSRSAVLASNMERMGIANSVILSAAPDKLMAGFTGYFNKILVDA 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+ PDVL     + +++ A  Q ++L      + PGG +V+S C+   +++E
Sbjct: 181 PCSGEGMFRKDPDVLAEWQPERVIQCAARQWEILKTVDQLLAPGGELVYSTCTFSPEENE 240

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMD 431
           ++V++++ +    V  + L            A       G +RI P+ +           
Sbjct: 241 QIVERLIATDRYEVVPLALPGLADHGRPEWAATGERRVAGTLRIMPNHVAGE-------- 292

Query: 432 GFFAVALRRL 441
           G F   +R+L
Sbjct: 293 GHFVAKMRKL 302


>gi|300361826|ref|ZP_07058003.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri JV-V03]
 gi|300354445|gb|EFJ70316.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri JV-V03]
          Length = 463

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 113/302 (37%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F ++ +N  G+E       A  S       +      +     ++  P      
Sbjct: 1   MSLPVEFIKKYQNLLGEEESNKFFAAIDSSSKKGFRLNPLKNNYHDVQYSLADPIEFTSD 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
                       +  G  + QD SA  P           VLDLCAAPGGK+      + +
Sbjct: 61  GYYGGISGRDSEWTSGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLEN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320
              + A ++SK R + LR NL+R       +          K    FD +LVDAPCS  G
Sbjct: 121 KGLLVANEISKSRAKDLRENLERWGATNVVVTNESPERLSKKLPHFFDKILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P  +     + ++     Q+++L Q +  +K GG +V+S C+   ++ EE+V  +
Sbjct: 181 MFRKDPAAMQYWSPEYVLTCQARQKEILTQAMKMLKAGGELVYSTCTYSPEEDEEIVAWL 240

Query: 381 LRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + +  + +E   L P  S        +     E  +R+                  F   
Sbjct: 241 VENYHLKIEPLKLYPGMSMGKSDWSKSNLPELEDTVRLWFQNGVGEGQ--------FVAH 292

Query: 438 LR 439
           LR
Sbjct: 293 LR 294


>gi|303283998|ref|XP_003061290.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457641|gb|EEH54940.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 714

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 110/330 (33%), Gaps = 51/330 (15%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
                            +    D   W     +         L+ + E +     +  G 
Sbjct: 122 AAAECEPTEPEVKPPTAVRWYPDRLAW-QFNYSRQQLRRLPHLESIHEFVKRANEY--GS 178

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA------------KVTALD 270
              Q+  + IP        +  VLD+CAAPG KT QL+                 V A D
Sbjct: 179 ITRQEVVSMIPAFFLKIEPHHLVLDMCAAPGSKTFQLLEMLHGGLNDPQALPEGFVVAND 238

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-------KLFDAVLVDAPCSSTGTIR 323
           V  +R   L     R++     +   +A ++            FD++L D PCS  GT+R
Sbjct: 239 VDIKRCNLLTHQTKRVNSPGLLVTNHEAQNFPEIKSMGGRTFPFDSILCDVPCSGDGTMR 298

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + PD+       +       Q K+ ++    +K GG +V+S C+ +  + E VV  +L+ 
Sbjct: 299 KAPDIWPRWTVGNGNGLHPLQLKIAMRAAHLLKIGGRLVYSTCTFNPIEDEAVVAAMLKQ 358

Query: 384 SPIPVELVPLNSAYWKSIDMAMALS---------------PEGWIRITPDML-------- 420
           S   +ELV ++        +    +               PEG  +  P M         
Sbjct: 359 SDGALELVDMSGEMPNLRRVPGVKTWQAWDKHGKHDAEGRPEGPFKCHPTMFSDAESDAL 418

Query: 421 -----EKIDGVSSGMDGFFAVAL-RRLIQP 444
                 ++        GFF     ++   P
Sbjct: 419 PLERCMRVLPHQDDTGGFFIAVFDKKREMP 448


>gi|301336155|ref|NP_001180384.1| tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 2 [Homo sapiens]
 gi|119628510|gb|EAX08105.1| NOL1/NOP2/Sun domain family, member 2, isoform CRA_a [Homo sapiens]
 gi|194386528|dbj|BAG61074.1| unnamed protein product [Homo sapiens]
          Length = 732

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 133/401 (33%), Gaps = 72/401 (17%)

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
              E        R  A         + +E          + I+PE    +  +       
Sbjct: 17  EDAEDGAEGGGKRGEAGWEGGYPE-IVKENKLFEHYYQELKIVPEGEWGQFMDA------ 69

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
             + +   + L I    ++  E   H   +  +      L++  + +VS      G    
Sbjct: 70  --LREPLPATLRITGYKRYPEELAWHTNLSRKILRKSPHLEKFHQFLVS--ETESGNISR 125

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRR 275
           Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV  +R
Sbjct: 126 QEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 185

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRH 325
              L     RL      ++  DA                  +D +L D PCS  GT+R++
Sbjct: 186 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKN 245

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L  S 
Sbjct: 246 IDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSE 305

Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE------ 421
             +EL  +++          I     ++ +G               +I P M        
Sbjct: 306 GALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEK 365

Query: 422 ----------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                     +I        GFF   L +         QPK
Sbjct: 366 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 406


>gi|255691307|ref|ZP_05414982.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides finegoldii DSM
           17565]
 gi|260622949|gb|EEX45820.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides finegoldii DSM
           17565]
          Length = 505

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 119/309 (38%), Gaps = 16/309 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F +   +  G+E    ++ A      + +    +      +  + +        
Sbjct: 1   MELPASFVDYTRSLLGEEEYEKLAVALQQEPPVSIRFNNEKWKVQDEGLSAVHSPFDRVP 60

Query: 206 KELPE-------SIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKT 256
                       +    P F  G ++VQ+AS+    Q           +LDLCAAPGGK+
Sbjct: 61  WSSEGVYLDERLTFTFDPLFHAGCFYVQEASSMFVEQALRQYIKEPAIMLDLCAAPGGKS 120

Query: 257 AQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312
                    G+ + A +V + R + L  NL +       +   D  D+      FD +L 
Sbjct: 121 THARSVLPEGSLLVANEVIRNRSQVLAENLAKWGHPDVVVTNNDPADFSALPSFFDVILT 180

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++
Sbjct: 181 DVPCSGEGMFRKDPVAIEEWTPENVEICWQRQRRIIADIWPCLKPGGILIYSTCTFNTKE 240

Query: 373 SEEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
            EE V+ +        EL+PL     W      +     G + +    +       +  +
Sbjct: 241 DEENVRWI--QQEFGAELLPLEVREEWNITGNLLKDESTGTVHLEGIPVYHFFPHKTKGE 298

Query: 432 GFFAVALRR 440
           GFF   LR+
Sbjct: 299 GFFLAVLRK 307


>gi|19114101|ref|NP_593189.1| tRNA (cytosine-5-)-methyltransferase (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74581924|sp|O13935|YF6H_SCHPO RecName: Full=Putative tRNA (cytosine-5-)-methyltransferase
           C23C4.17
 gi|2465159|emb|CAB16888.1| tRNA (cytosine-5-)-methyltransferase (predicted)
           [Schizosaccharomyces pombe]
          Length = 674

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 126/400 (31%), Gaps = 74/400 (18%)

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           K+    R              R+ +    RI G        K   E +Y       + + 
Sbjct: 33  KKQNLFRGKPNDEFDSFMEYMRKPLPTTFRICGYRHHAFELKNHFEKYYVPSLKNVVHEG 92

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
              P    L    D   +       ++       +     +        G    Q+A + 
Sbjct: 93  QTIPPPTVLPWYPDGLAYIVDAQKDVIRKSPPLKRLQRFLVSENEA---GNINRQEAVSM 149

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--------------------SGAKVTALDV 271
           +P        +  +LD+CAAPG KTAQLI                         V A D 
Sbjct: 150 LPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDA 209

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-------------------LFDAVLV 312
             +R + L   ++RL+     ++  DA                           FD +L 
Sbjct: 210 DPKRAQMLVHQINRLNSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEEKKILKFDRILA 269

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  GT R++  +      +        Q ++L++G+  +K GG +V+S CS++  +
Sbjct: 270 DVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIE 329

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYW--------------------------------KS 400
           +E VV   L+++   V LV ++                                    + 
Sbjct: 330 NEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWKVLDDSLNEFQSPAENTNDKIEL 389

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +    L  E   ++  +   ++        GFF   L++
Sbjct: 390 TESMWPLPEEEMSKLHIERCARLYPHMQNTGGFFVAVLQK 429


>gi|254487464|ref|ZP_05100669.1| ribosomal RNA small subunit methyltransferase B [Roseobacter sp.
           GAI101]
 gi|214044333|gb|EEB84971.1| ribosomal RNA small subunit methyltransferase B [Roseobacter sp.
           GAI101]
          Length = 125

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 7/130 (5%)

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           ++DAPCS+TGTIRRHPD+   +D  +  +    Q +L+    S + PGG +VF  CSL  
Sbjct: 1   MLDAPCSATGTIRRHPDLPHAKDGSEFGELIELQAELIDHAWSLLNPGGRLVFCTCSLLP 60

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            + E  V + L         V  ++     ID    +S EG +R+ PD    +     GM
Sbjct: 61  DEGEVQVDEALERHSDMS--VDQSALSVPGID-PSWISSEGGLRLRPDYWADL----GGM 113

Query: 431 DGFFAVALRR 440
           DGF+   LR+
Sbjct: 114 DGFYIACLRK 123


>gi|119945884|ref|YP_943564.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Psychromonas
           ingrahamii 37]
 gi|146325697|sp|A1SWV0|RSMF_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|119864488|gb|ABM03965.1| putative RNA methylase, NOL1/NOP2/sun family protein [Psychromonas
           ingrahamii 37]
          Length = 481

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 24/260 (9%)

Query: 193 LNAVMLPTGGIR--LKELPESIVSLPGFAEGVWWVQDASASIP----VQLFGTLNNLSVL 246
           L A+     G    L+E P  + +      G+ ++Q+AS+ +P       F       VL
Sbjct: 63  LTAIPWCAEGFWIELQEEPTPLGNSAEHLGGLCYIQEASSMLPVAALFHFFTPTTQSIVL 122

Query: 247 DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           D  AAPG KT Q    + +   +   + S  R++ L  N+ R  +    +   DA  +  
Sbjct: 123 DAAAAPGSKTTQIAAKMNNSGLIIGNEFSSSRIKMLHANIQRCGIKNVALTHFDARVFGK 182

Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FDA+L+DAPCS  GT+R+    +       I + A  Q++L+L     +K  GI+
Sbjct: 183 WLPGTFDAILLDAPCSGEGTVRKDKYAMNNWSQSSINEIASTQQELILSAFHALKEDGIL 242

Query: 362 VFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           ++S C+L  +++++ +   L+   P  +E + L + +    D     + EG++ I P + 
Sbjct: 243 IYSTCTLSHEENQD-ICFFLKDKFPEHIEFLDLETLF---TDAKKTRTAEGFLHIWPQVY 298

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           +          GFF  A+++
Sbjct: 299 DSE--------GFFVAAIKK 310


>gi|156375011|ref|XP_001629876.1| predicted protein [Nematostella vectensis]
 gi|156216886|gb|EDO37813.1| predicted protein [Nematostella vectensis]
          Length = 491

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 28/251 (11%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270
           SL G    V ++Q+  +++   + G  +  SVLD+CAAPGGKT  +   + +   + A D
Sbjct: 244 SLSGVLTDVLFLQNLPSAVVGHILGPQSGESVLDMCAAPGGKTCHIAALMKNKGLIVAFD 303

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMD------------------AFDYCPKKLFDAVLV 312
            S+ +++K+  N +   +       +D                       P + FD +L+
Sbjct: 304 KSQPKIQKIIANCEMQKVSIVKTHVIDASKALDTKAAPSSRDVSTTSPPYPPEAFDRILL 363

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS+ G   + P  +      ++      QRK+    +  ++PGG +V+S C++  ++
Sbjct: 364 DAPCSALG---QRPQSVVHMKLKELQSFPKLQRKIFSSAVGLLRPGGTLVYSTCTITPEE 420

Query: 373 SEEVVQKVLRSSPIPVELVP--LNSAYWKSIDMAMALSPEGWI-RITPDMLEKIDGVSSG 429
           +E+ V   LRS P  + LVP   +       D  ++    G + R  P            
Sbjct: 421 NEKQVAWALRSFPG-LRLVPQVPHLGGPGFPDCGLSDHDRGLVQRFDPTRSSVEPCCDVD 479

Query: 430 MDGFFAVALRR 440
             GFF     +
Sbjct: 480 TIGFFIAKFVK 490


>gi|291536578|emb|CBL09690.1| tRNA and rRNA cytosine-C5-methylases [Roseburia intestinalis M50/1]
          Length = 493

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 98/268 (36%), Gaps = 26/268 (9%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG----------TLNNLSVLDL 248
                   E  ++    P    GV+++Q+ SA  PV                    +LDL
Sbjct: 58  WAKDGFYYEKDDTPGKHPLHEAGVYYIQEPSAMAPVSYLMEDYDVVQKEAADCQERILDL 117

Query: 249 CAAPGGKTAQ------------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
           CAAPGGK+ Q                   +   ++   R + L  N++R+ +    +   
Sbjct: 118 CAAPGGKSTQIAARMHEMYTSGKWKEQGLLICNEIHPARAKILSENVERMGIANAMVTNE 177

Query: 297 DAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                    +  F  +LVDAPCS  G  R++         +++   A  Q  +L    S 
Sbjct: 178 TPQRLAEMFEDYFTRILVDAPCSGEGMFRKNEAACEEWSPENVSLCAERQDGILDCAASM 237

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           + PGG +V+S C+    ++E  + + L   P    +    +    +     A   E   +
Sbjct: 238 LAPGGRIVYSTCTFAPAENEGSMARFLLRHPEFHIVEVKKAEGMSAGVPEWAYFGEKMGQ 297

Query: 415 ITPDMLE--KIDGVSSGMDGFFAVALRR 440
           I P++ +  ++       +G +   L +
Sbjct: 298 ILPEIAQTIRLWPQHLKGEGHYLAVLEK 325


>gi|154335609|ref|XP_001564043.1| methyltransferase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061074|emb|CAM38095.1| putative methyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 837

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 124/341 (36%), Gaps = 46/341 (13%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           EW              L +  +  +   I   +    DI      + A    +G      
Sbjct: 193 EWAAFVQCMATPLPMTLRLHHSERALATIATRVLTTPDIAAVVRPVAAFPSNSGLYSCSN 252

Query: 208 LPESIVSLPGFAEG------VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----- 256
                 +   +             Q+  ++IPV +     + +V+DLCAAPG KT     
Sbjct: 253 NDYHSHTRAEYVCRTLHSASAVSFQEVVSAIPVSVLDVQPHHTVVDLCAAPGSKTLQALD 312

Query: 257 ------AQLIVSGAKVTALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC------- 302
                     V    + A +  + +  + L   L R H         D   +        
Sbjct: 313 AMLSGGWSGDVCRGVLIANEKDRVKATQTLPARLKRYHAPNVMTTRCDGTQWPRLYLDDP 372

Query: 303 -------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                   ++ FD ++ D PCS  GTIR+   +  T     +      QR LL +G+  +
Sbjct: 373 TNPNSEPQERQFDRIICDVPCSGDGTIRKERSIATTWSASYVKSLVPTQRALLCRGLDLL 432

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY------WKSIDMAMALSP 409
             GGI+V+S CS++ ++ EEV+   L      VEL+ +N          +SI    + + 
Sbjct: 433 ATGGILVYSTCSMNPKEDEEVICAGLEIFSDSVELIDINVTLQQKGFHLRSIGGIRSPNL 492

Query: 410 EGWIR-ITP-----DMLEKIDGVSSGMDGFFAVALRRLIQP 444
           EG  R + P     + + ++        GFF  ALR++ QP
Sbjct: 493 EGLQRPVLPPTYDGNRVLRVLPHRDDTGGFFVAALRKVKQP 533


>gi|260772859|ref|ZP_05881775.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           metschnikovii CIP 69.14]
 gi|260611998|gb|EEX37201.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           metschnikovii CIP 69.14]
          Length = 473

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 119/271 (43%), Gaps = 21/271 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
            +         L  +     G  +   E    + +      G++++Q+AS+ +PV     
Sbjct: 52  FQTRAADKGWYLEPIPWCESGFWITADEEQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111

Query: 240 L---NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   VLD+ AAPG KT Q+   + +   + A + S  R++ L  N++R  +    +
Sbjct: 112 QSGAPFEHVLDMAAAPGSKTTQIAALMDNQGVLIANEYSASRVKILHANIERCGIRNSAL 171

Query: 294 IEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
              D   +     + FDAVL+DAPCS  GT+R+ PD +       ++  A  Q+ L+   
Sbjct: 172 TNFDGQIFGGWLPEQFDAVLLDAPCSGEGTVRKDPDAMKNWSKASVMSIAQTQKSLIESA 231

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              +K GG++V+S C+L ++++++V   +  +    V    L+  +  +      ++ EG
Sbjct: 232 FQALKVGGVLVYSTCTLSREENQDVCWHLKHTYGDAVTFTRLDQLFPSA---EQTITEEG 288

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           ++ I P + +          GFF   + +  
Sbjct: 289 FLHIFPQVYDCE--------GFFVAKITKQA 311


>gi|148725459|emb|CAN87999.1| novel protein (zgc:55517) [Danio rerio]
          Length = 766

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/349 (22%), Positives = 118/349 (33%), Gaps = 57/349 (16%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
             +     L+  Y KE      D         L+   D   W   L+  +L    +  K 
Sbjct: 80  HAKEILHTLKEKYFKEVQDLEVDGQKIEAPQPLSWYPDELAWHTNLSRKILRKSPLLEKF 139

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT 267
               +        G    Q+A + IP  L        +LD+CAAPG KTAQLI       
Sbjct: 140 HQFLVSETES---GNISRQEAVSMIPPLLLKIEPQHKILDMCAAPGSKTAQLIEMLHSDM 196

Query: 268 ----------ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307
                     A DV  +R   L     RL+     ++  DA                  +
Sbjct: 197 DVPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLHFDNNGKKDILFY 256

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS  GT+R++ DV     T + +     Q ++ ++G+  +  GG +V+S CS
Sbjct: 257 DRILCDVPCSGDGTMRKNIDVWKKWTTSNSLHLHGLQLRIAVRGVEQLAVGGRMVYSTCS 316

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI--------- 413
           L+  + E V+  +L  S   +EL   +           I     ++ EG           
Sbjct: 317 LNPIEDEAVIAALLEKSEGSLELADASPDLPGLKYMPGITSWKVMTKEGQWFSNFSEVPT 376

Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI 442
               +I P M                  +I        GFF   L +  
Sbjct: 377 SRHTQIRPTMFPPSDSEKLTEMRLERCVRILPHHQNTGGFFVAVLVKKA 425


>gi|242019809|ref|XP_002430351.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212515475|gb|EEB17613.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 682

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 133/420 (31%), Gaps = 95/420 (22%)

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE---- 163
            +  ++ K  R   +        + RE  +         I PE   +       ++    
Sbjct: 4   NKIKRKVKRERSKNENSRKSYEDIVRENKDFESYYKLQKICPEEEWDNFIKALKEDLPTA 63

Query: 164 --------RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG--IRLKELPESIV 213
                       +        + D  +    +    +  A+         +L+   + I 
Sbjct: 64  FRITGSKTEAKTLLQIVQGQYFKD-FLNAKQDESIKEPFALPWYPDNLAWQLQLSRKDIR 122

Query: 214 SLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262
               F +                Q+  + IP       ++  +LD+CA+PG KTAQLI  
Sbjct: 123 RCEAFFKLHNFLISETDSGNINRQEVVSMIPPIALDVKSHHKILDMCASPGSKTAQLIEY 182

Query: 263 ---------GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-------- 305
                       V A D+   R   L     RL      I   DA               
Sbjct: 183 LHKNDERLPKGFVIANDIDNNRCYMLVHQAKRLSSPNIIITNHDASIMPNFIIKNNDGGE 242

Query: 306 ---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD +L D PC+  GT+R++ D+    +T +       Q +++ +G+  +  GG +V
Sbjct: 243 NILKFDRILCDVPCTGDGTLRKNADIWTKWNTANGNNLHGVQFRIIKRGVEMLTIGGRLV 302

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA-------------------------- 396
           +S CSL+  ++E V+ ++L  +   ++LV L                             
Sbjct: 303 YSTCSLNPVENEAVIARLLTEAQGSLKLVNLAPLLPGLKYLKGLKSWLVTSKDVKGYKTF 362

Query: 397 ---------------YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                          +    D+   L+ +  +RI P   +          GFF  AL ++
Sbjct: 363 DEVPKQWHTVVRPQMFPPPQDIVDQLNLDLCVRILPHHQD--------TGGFFVAALEKV 414


>gi|281212261|gb|EFA86421.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
          Length = 749

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 122/349 (34%), Gaps = 64/349 (18%)

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
                ++++  +       + ID      +       + +   +   +      ++  L 
Sbjct: 104 MTQIVRDQLAQVISKLPKEVEIDGQTFTTLSEIEWYPDHLGWHSSLPKKAFRKNTV--LE 161

Query: 217 GFAEGVWWVQDAS--------ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--- 265
            F + +    +          + IP           VLD+CAAPG KT QLI S  +   
Sbjct: 162 EFHQFLMHHSEQGNLTRQETVSMIPPVFMDVKPEHVVLDMCAAPGSKTTQLIESIHQGLS 221

Query: 266 --------VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------PKKLFD 308
                   V A DV   R   L     RL   A  I   +A  +             LFD
Sbjct: 222 EKSVPTGVVIANDVDTNRCYMLVHQTARLGSPAIVITNHEAQHFPLLNLGAELGGPLLFD 281

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L D PCS  GT+R++PD+               Q ++ ++  + +K GG +V+S CSL
Sbjct: 282 RILADVPCSGDGTMRKNPDLWARWKNHFGSALHPLQLQIAVRAANLLKVGGRMVYSTCSL 341

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAY-----------WKSIDMA--------MALSP 409
           +  ++E VV  ++  S   + +V +++ +           W  +D           +++P
Sbjct: 342 NPIENEAVVAALIARSEGSMRIVDVSAMHPALKRAQGLHSWPVVDKETGELYSSWESVAP 401

Query: 410 EGWIRITPDMLE---------------KIDGVSSGMDGFFAVALRRLIQ 443
               RI P                   ++        GFF   L ++ +
Sbjct: 402 TKKARIHPSFFPPTKEFAESIGLQNCMRVYPHLQDTGGFFITVLEKVSE 450


>gi|300814521|ref|ZP_07094777.1| NOL1/NOP2/sun family protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511348|gb|EFK38592.1| NOL1/NOP2/sun family protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 178

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 29/201 (14%)

Query: 246 LDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFD 300
           +DLCAAPGGK+  L     +  ++ A D S  +L+ +R N  RL +    +   D   ++
Sbjct: 1   MDLCAAPGGKSTHLGALLENTGQIVACDKSWYKLDLIRENAKRLGVSNIKVSINDASKYN 60

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              +  FD  LVDAPCS+ G  R+ PD+ W R  DDI   A  Q+ ++     +VK GG+
Sbjct: 61  NDFEDKFDYCLVDAPCSAIGLYRKKPDIKWNRSLDDIKNLAQIQKIIINNAGRYVKKGGV 120

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++S CSL   ++E V+++ L  +     L                +  +  +++ P   
Sbjct: 121 LIYSTCSLSYSENEGVIKEFLDRNKNYKIL---------------TIEGKDILKLFP--- 162

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                     DGF    L+RL
Sbjct: 163 ------FDNYDGFSICKLQRL 177


>gi|296192254|ref|XP_002743980.1| PREDICTED: putative methyltransferase NSUN5 isoform 2 [Callithrix
           jacchus]
          Length = 391

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 23/251 (9%)

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262
                 +   P +  G   +QD ++ +P  L        V+D CAAPG KT+ L     +
Sbjct: 153 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 212

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSS 318
             K+ A D+  +RL  +   L R  +   ++ E D     P          +L+D  CS 
Sbjct: 213 QGKIFAFDLDAKRLSSMATLLARAGVSCCELAEDDFLAVSPSDPRYSQVRYILLDPSCSG 272

Query: 319 TGTIRRHPDVLWTRDT--DDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSE 374
           +G   R  +    R    + +   A FQ++ L   ++F  ++    +V+S CSL ++++E
Sbjct: 273 SGMQSRQLEEPGARTPSPERLHALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENE 329

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           +VV+  L+ +P    L P+    W    ++     E  +R +P+             GFF
Sbjct: 330 DVVRGALQQNPGAFRLAPVLPT-WPLRGLSRFPGAEHCLRASPETTLSG--------GFF 380

Query: 435 AVALRRLIQPK 445
              + R+  P+
Sbjct: 381 VAVIERVEAPR 391


>gi|167764745|ref|ZP_02436866.1| hypothetical protein BACSTE_03135 [Bacteroides stercoris ATCC
           43183]
 gi|167697414|gb|EDS13993.1| hypothetical protein BACSTE_03135 [Bacteroides stercoris ATCC
           43183]
          Length = 492

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 119/302 (39%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F +      G E    +  +  S   + + +              +        
Sbjct: 1   MELPVSFADYTRTLLGDEDYKELVTSLESEQSVSIRLNPLKPFAFRSGEHAVPWCTSGFY 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI-- 260
            E   +    P F  G ++VQ+AS+    Q          + +LDLCAAPGGK+  +   
Sbjct: 61  LEERPTFTFDPLFHAGCYYVQEASSMFVEQALKQYMGEEPVVMLDLCAAPGGKSTHIRSL 120

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318
               + + A +V + R + L  NL +       +   D  D+ P +  FD +L D PCS 
Sbjct: 121 LPDNSLLIANEVIRNRSQILAENLTKWGHPDVVVTNSDPSDFTPLEDFFDVILTDVPCSG 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +   + +++      QR+++      +KPGGI+++S C+ + +++EE ++
Sbjct: 181 EGMFRKDPVAISEWNPENVEICRQRQRRIIADIWPCLKPGGILIYSTCTYNTKENEENIR 240

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +       V  + +   +  + ++    S     R  P   +          GFF   L
Sbjct: 241 WIRDEFGAEVLPLDVAEEWNITGNLLQGES-FPVYRFLPHKTQGE--------GFFLAVL 291

Query: 439 RR 440
           R+
Sbjct: 292 RK 293


>gi|297674921|ref|XP_002815454.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like isoform
           2 [Pongo abelii]
          Length = 732

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 134/401 (33%), Gaps = 72/401 (17%)

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
              E        R  A         + +E          + I+PE    +  +       
Sbjct: 17  EDAEDGAEGGGKRGEAGWEGGYPE-IVKENKLFEHYYQELKIVPEGEWGQFMDA------ 69

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
             + +   + L I    ++  E   H   +  +     +L++  + +VS      G    
Sbjct: 70  --LREPLPATLRITGYKRYPEELAWHTNLSRKILRKSPQLEKFHQFLVS--ETESGNISR 125

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRR 275
           Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV  +R
Sbjct: 126 QEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 185

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRH 325
              L     RL      ++  DA                  +D +L D PCS  GT+R++
Sbjct: 186 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKN 245

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L  S 
Sbjct: 246 IDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSE 305

Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE------ 421
             +EL  +++          I     ++ +G               +I P M        
Sbjct: 306 GALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPLKDPEK 365

Query: 422 ----------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                     +I        GFF   L +         QPK
Sbjct: 366 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 406


>gi|57167662|ref|ZP_00366802.1| Sun/nucleolar protein family protein VC1502 [Campylobacter coli
           RM2228]
 gi|305433169|ref|ZP_07402325.1| NOL1/NOP2/sun family protein [Campylobacter coli JV20]
 gi|57020784|gb|EAL57448.1| Sun/nucleolar protein family protein VC1502 [Campylobacter coli
           RM2228]
 gi|304443870|gb|EFM36527.1| NOL1/NOP2/sun family protein [Campylobacter coli JV20]
          Length = 291

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 21/279 (7%)

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           I          +LT++ + +    +   +       +  +    + S+  F E  +++Q+
Sbjct: 27  ICCFINRLKCDNLTLEREFQDLNLEYKKLNEYCYLFKACDKSI-LSSMQAFNEFKFYIQN 85

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +           SVLD+CAAPGGK+      + +   +   + SK R   L+ NL 
Sbjct: 86  YASYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLK 145

Query: 285 RLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
              + A   + +           FD +L+DAPCS+         +   + + +I   A  
Sbjct: 146 NYGVKARVFMKDGKNIGNLCPLKFDKILLDAPCSTLA----KMGLELEKSSKEIKNIAKL 201

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN--SAYWKSI 401
           Q+KLL   +  +K GG +V+S C+  K+++EEV++  L+S    +EL+ +N  +A  K+ 
Sbjct: 202 QKKLLHSALKALKVGGELVYSTCTFTKEENEEVIENALKS-DFDIELLDINLENALAKNG 260

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +   +     RI P             DGFF   LR+
Sbjct: 261 QSSEFEAISKCKRILPCEEY---------DGFFITKLRK 290


>gi|218128754|ref|ZP_03457558.1| hypothetical protein BACEGG_00326 [Bacteroides eggerthii DSM 20697]
 gi|217988982|gb|EEC55298.1| hypothetical protein BACEGG_00326 [Bacteroides eggerthii DSM 20697]
          Length = 492

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/305 (21%), Positives = 125/305 (40%), Gaps = 22/305 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F +   N  G E  + ++ A  S   + + +              +        
Sbjct: 1   MELPVLFTDYTRNLLGDEDYMRLTAALESEQPVSIRLNPLKPFAFQLGEDEVPWCASGFY 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI-- 260
            +   +    P F  G ++VQ+AS+    Q+           +LDLCAAPGGK+  +   
Sbjct: 61  LKERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQHWGEEPAVMLDLCAAPGGKSTHVRSI 120

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318
               + + A +V + R + L  NL +       +   D  D+ P K LFD +L D PCS 
Sbjct: 121 LPENSLLIANEVIRNRSQILSENLAKWGHTGVVVTNNDPSDFTPLKDLFDIILTDVPCSG 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + +++EE ++
Sbjct: 181 EGMFRKDPVAVSEWSLENVEVCWRRQRRIISDIWPCLKPGGILIYSTCTYNTKENEENIR 240

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE---KIDGVSSGMDGFFA 435
            +        E++PL+ A          ++      + P       +     +  +GFF 
Sbjct: 241 WI--RDEFGAEVLPLDVAE------DWNITGN----LLPGEHFPVYRFLPYKTKGEGFFM 288

Query: 436 VALRR 440
             LR+
Sbjct: 289 AVLRK 293


>gi|322389235|ref|ZP_08062796.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis ATCC 903]
 gi|321144140|gb|EFX39557.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis ATCC 903]
          Length = 434

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 118/298 (39%), Gaps = 24/298 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P  FKE+ ++  G++                       ET     + +     G   
Sbjct: 1   MNFPNGFKEKYQHLLGEDAAAFF-ATFEQEAVSAFRTNPLKETQKAFDDPIPNTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +SI      A G+ + Q+ +A +  Q+      + VLDL AAPGGKT Q    + +
Sbjct: 60  KVSGKSIEH----ATGLVYSQEPAAQMVAQVAQPKPGMKVLDLAAAPGGKTTQLLSYLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++ K R + L  N++R       +     D         FD +++DAPCS  G
Sbjct: 116 QGLLVSNEIHKGRSKILVENVERFGARNVLVTNESADRLAKVFSGFFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + +  QR++L   +  + PGG +V+S+C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSVDYPRECSLLQREILEDALKMLVPGGSLVYSSCTWAPEENEEIVSWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L +  + +E +   +   + ID           R+ P   +            F    
Sbjct: 236 LENYDLELETIEKINGMAEGIDYPETA------RMYPHHFKGEGQ--------FVAKF 279


>gi|68477176|ref|XP_717381.1| hypothetical protein CaO19.518 [Candida albicans SC5314]
 gi|46439090|gb|EAK98412.1| hypothetical protein CaO19.518 [Candida albicans SC5314]
 gi|238879891|gb|EEQ43529.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 713

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 101/271 (37%), Gaps = 60/271 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----------SGAKVTALDVS 272
              Q+A + IP  L     +  VLD+CAAPG KTAQLI               V A D  
Sbjct: 155 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLIEALHAEDEKKLPTGFVLANDSD 214

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             FD +L D PCS   T+R+
Sbjct: 215 YKRSHMLVHQVKRLNSPNFLVVNHDATLFPRIRLNNSSQDLKFDRILCDVPCSGDATMRK 274

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  +K GG +V+S CSL   ++E +V   LR  
Sbjct: 275 NLNVWKDFRVGNALGLHNVQELILNRGLQLLKKGGRLVYSTCSLSPIENEAIVASALRKW 334

Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410
              + LV +++                                  A+  + + A     E
Sbjct: 335 GDQIRLVNVDNELPGLKRRAGVSDWKVYGKDMELREPGAEDVPETAFPPTKEEAEKFHLE 394

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +R+ P M            GFF     ++
Sbjct: 395 NCVRVYPHMQ--------NTGGFFITVFEKI 417


>gi|126140348|ref|XP_001386696.1| hypothetical protein PICST_37206 [Scheffersomyces stipitis CBS
           6054]
 gi|126093980|gb|ABN68667.1| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 698

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 96/263 (36%), Gaps = 44/263 (16%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272
              Q+A + IP  L     +  VLD+CAAPG KTAQ            +    V A D  
Sbjct: 148 ISRQEAVSMIPPLLMDIKPHHYVLDMCAAPGSKTAQLVEALHQDDDKELPTGFVLANDSD 207

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             FD +L D PCS  GT+R+
Sbjct: 208 YKRSHMLVHQVKRLNSANFMVVNHDATLFPRLKLNNSNEFLKFDRILCDVPCSGDGTMRK 267

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  +K GG +V+S CS+   ++E VV   LR  
Sbjct: 268 NVNVWKDFTVGNALGLHPLQINILNRGLQLLKKGGRLVYSTCSMSPVENEAVVAAALRKW 327

Query: 385 PIPVELVPLNSAYWKSID--------------------------MAMALSPEGWIRITPD 418
              + LV  ++     +                            A   + E   +    
Sbjct: 328 GGQIRLVNCDNELPGLVRRNGISDWKVFGKDMELRERGAEDIPATAFPPTEEETAKFNLQ 387

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
              ++        GFF     ++
Sbjct: 388 NCIRVYPHLQNTGGFFITVFEKI 410


>gi|270288818|ref|NP_001161820.1| putative methyltransferase NSUN5 isoform 4 [Homo sapiens]
 gi|119590100|gb|EAW69694.1| hCG39703, isoform CRA_c [Homo sapiens]
          Length = 391

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 23/272 (8%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D+     K   +      + +      +   P +  G   +QD ++ +P  L        
Sbjct: 132 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 191

Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L R  +   ++ E D    
Sbjct: 192 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 251

Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF- 354
            P          +L+D  CS +G   R        T     +   A FQ++ L   ++F 
Sbjct: 252 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 311

Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++    +V+S CSL ++++E+VV+  L+ +P    L P   A W    ++     E  +
Sbjct: 312 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 367

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           R +P+             GFF   + R+  P+
Sbjct: 368 RASPETTLSS--------GFFVAVIERVEVPR 391


>gi|68476987|ref|XP_717471.1| hypothetical protein CaO19.8149 [Candida albicans SC5314]
 gi|46439184|gb|EAK98505.1| hypothetical protein CaO19.8149 [Candida albicans SC5314]
          Length = 756

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 101/271 (37%), Gaps = 60/271 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----------SGAKVTALDVS 272
              Q+A + IP  L     +  VLD+CAAPG KTAQLI               V A D  
Sbjct: 198 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLIEALHAEDEKKLPTGFVLANDSD 257

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             FD +L D PCS   T+R+
Sbjct: 258 YKRSHMLVHQVKRLNSPNFLVVNHDATLFPRIRLNNSSQDLKFDRILCDVPCSGDATMRK 317

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  +K GG +V+S CSL   ++E +V   LR  
Sbjct: 318 NLNVWKDFRVGNALGLHNVQELILNRGLQLLKKGGRLVYSTCSLSPIENEAIVASALRKW 377

Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410
              + LV +++                                  A+  + + A     E
Sbjct: 378 GDQIRLVNVDNELPGLKRRAGVSDWKVYGKDMELREPGAEDVPETAFPPTKEEAEKFHLE 437

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +R+ P M            GFF     ++
Sbjct: 438 NCVRVYPHMQ--------NTGGFFITVFEKI 460


>gi|124806360|ref|XP_001350701.1| sun-family protein, putative [Plasmodium falciparum 3D7]
 gi|23496827|gb|AAN36381.1|AE014848_57 sun-family protein, putative [Plasmodium falciparum 3D7]
          Length = 376

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 114/328 (34%), Gaps = 41/328 (12%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD- 185
              +   E              P+    +L + YG+++ + +         + L V  + 
Sbjct: 76  SSDKWKYEMNNEKIPAHVRYSFPKELYNQLLDCYGEKKSITLMSILNEKAPVFLRVNNNK 135

Query: 186 --IETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
                    L +  +            L    + + ++  + +G + +QD ++ I     
Sbjct: 136 ISRNELYKTLISKGISVEKCVNSPYGLLLTKNQILKNIHEYKKGYFEIQDEASQIVSSKI 195

Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD CA  GGK    + L+ +  K+   D+  + L + +  L R  +    ++
Sbjct: 196 PVHPGDKVLDYCAGSGGKTLAFSMLMENTGKIYLHDIRDQMLSQAKIRLRRAGIQNYILL 255

Query: 295 EMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
             +           D V+VDAPC+ TG +RR+P++ +    + +      QR++    + 
Sbjct: 256 NSNHILLKKLFGYMDVVIVDAPCTGTGALRRNPEMKYKFTNNKLYDYVKTQREIFENALL 315

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           ++K  G +V+  CS+   ++    +   +   + +   P +S                  
Sbjct: 316 YLKKNGKIVYITCSILDAENVHQAKYFCQKHNLYLSEAPFHS------------------ 357

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
                        S  MDGFF     R 
Sbjct: 358 ----------LPQSKAMDGFFLATFERK 375


>gi|126320957|ref|XP_001371426.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein
           [Monodelphis domestica]
          Length = 799

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 132/426 (30%), Gaps = 87/426 (20%)

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF------ 159
            + + A      R  +         + +E          ++I+PE   E+          
Sbjct: 23  ESRDDATDRDGKRDKSGWEGGYPE-IIKENKLFEHYYQELNIVPEGEWEQFMQALREPLP 81

Query: 160 ---------YGKERVLAISDACISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKEL 208
                       + +L            DL V          L      L       +++
Sbjct: 82  ATLRITGYKCHAKEILHCLKNKYFKELEDLVVDGQKVEVPQPLSWYPEELAWHTNLSRKI 141

Query: 209 PESIVSLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---- 256
                 L  F + +           Q+A + IP  L     +  +LD+CAAPG KT    
Sbjct: 142 LRKSPQLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVQPHHKILDMCAAPGSKTAQLI 201

Query: 257 ------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----------AFD 300
                   +      V A DV  +R   L     RL      ++  D             
Sbjct: 202 EMLHADMNVSFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDMNG 261

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 +D +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG 
Sbjct: 262 KKEVLFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGVEQLAEGGR 321

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-- 413
           +V+S CSL+  + E V+  +L  S   +EL  ++S          I     ++ +G    
Sbjct: 322 MVYSTCSLNPIEDEAVIASLLEKSEGALELADVSSELPGLKWMPGITQWKVMTKDGQWFA 381

Query: 414 -----------RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI---- 442
                      +I P M                  +I        GFF   L +      
Sbjct: 382 DWKDVPQSRHTQIRPTMFPPKGQENLKKMNLERCLRILPHHQNTGGFFVAVLVKKSSMPW 441

Query: 443 ---QPK 445
              QPK
Sbjct: 442 NKRQPK 447


>gi|15903302|ref|NP_358852.1| hypothetical protein spr1259 [Streptococcus pneumoniae R6]
 gi|15458898|gb|AAL00063.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
          Length = 267

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 10/265 (3%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              PE F E+       +       +          V    E      +A+     G   
Sbjct: 1   MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262
           K         P  A G+ + Q+ +A +  Q+      + VLDL AAPGGK+ QL      
Sbjct: 60  KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + ++S +R + L  N++R       +     D      K  FD +++DAPCS  G
Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ PD +     D   + A  QR++L   ++ +  GG +V+S C+   +++EE+V  +
Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAM 405
           L      +  V   +     ID+  
Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPE 260


>gi|332228170|ref|XP_003263268.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 2
           [Nomascus leucogenys]
          Length = 732

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 135/401 (33%), Gaps = 72/401 (17%)

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
              E        R  A         + +E          + I+PE    +  +       
Sbjct: 17  EDAEDGAEGGGKRGEAGWEGGYPE-IVKENKLFEHYYQELKIVPEGEWGQFMDA------ 69

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
             + +   + L I    ++  E   H   +  +     +L++  + +VS      G    
Sbjct: 70  --LREPLPATLRITGYKRYPEELAWHTNLSRKILRKSPQLEKFHQFLVS--ETESGNISR 125

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRR 275
           Q+A + IP  L G   +  +LD+CAAPG KT            +      V A DV  +R
Sbjct: 126 QEAVSMIPPLLLGVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 185

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRH 325
              L     RL      ++  DA                  +D +L D PCS  GT+R++
Sbjct: 186 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKN 245

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L  S 
Sbjct: 246 IDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSE 305

Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE------ 421
             +EL  +++          I     ++ +G               +I P M        
Sbjct: 306 GALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEK 365

Query: 422 ----------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                     +I        GFF   L +         QPK
Sbjct: 366 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 406


>gi|332820887|ref|XP_003310669.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 [Pan
           troglodytes]
          Length = 732

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 134/401 (33%), Gaps = 72/401 (17%)

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
              E        R  A         + +E          + I+PE    +  +       
Sbjct: 17  EDAEDGAEGGGKRGEAGWEGGYPE-IVKENKLFEHYYQELKIVPEGEWGQFMDA------ 69

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
             + +   + L I    ++  E   H   +  +     +L++  + +VS      G    
Sbjct: 70  --LREPLPATLRITGYKRYPEELAWHTNLSRKILRKSPQLEKFHQFLVS--ETESGNISR 125

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRR 275
           Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV  +R
Sbjct: 126 QEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 185

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRH 325
              L     RL      ++  DA                  +D +L D PCS  GT+R++
Sbjct: 186 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKN 245

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L  S 
Sbjct: 246 IDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSE 305

Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE------ 421
             +EL  +++          I     ++ +G               +I P M        
Sbjct: 306 GALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEK 365

Query: 422 ----------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                     +I        GFF   L +         QPK
Sbjct: 366 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 406


>gi|307166761|gb|EFN60723.1| tRNA (cytosine-5-)-methyltransferase CG6133 [Camponotus floridanus]
          Length = 665

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 104/312 (33%), Gaps = 81/312 (25%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            +L+   + I     +                  Q+  + +P  +     +  VLD+CAA
Sbjct: 131 WQLQLTRKDIRRSEAYFRLHNFLIAETNNGSISRQEVVSMVPPLVLDVKPSHKVLDMCAA 190

Query: 252 PGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           PG KTAQLI               V A D+   R   L     RL+     I   D+   
Sbjct: 191 PGSKTAQLIEMIHADEGNIPPEGFVIANDLDNNRCYMLVHQAKRLNSPNILITNHDSSVM 250

Query: 302 C-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                           FD +L D PCS  GT+R++PD+       +       Q ++  +
Sbjct: 251 PNFIITNPDGTKDTLKFDRILADVPCSGDGTMRKNPDIWCKWSPANGNNLHGIQYRIAKR 310

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL----------------- 393
           G+  +  GG +V+S CSL+  ++E V+ ++L  +   V+L+                   
Sbjct: 311 GLELLIVGGRMVYSTCSLNPIENEAVLHRLLCETGDSVQLIDCRDLVPGLLCDPGVTHWK 370

Query: 394 ------------------------NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
                                      +   +D A     E  +RI P   +        
Sbjct: 371 PASKNLQYYNTWDDVPEQWQTQVRPKMFPPQVDEASKFHLERCMRILPHHQD-------- 422

Query: 430 MDGFFAVALRRL 441
             GFF   L ++
Sbjct: 423 TGGFFVAVLEKV 434


>gi|319938945|ref|ZP_08013309.1| NOL1/NOP2/sun family protein [Streptococcus anginosus 1_2_62CV]
 gi|319811995|gb|EFW08261.1| NOL1/NOP2/sun family protein [Streptococcus anginosus 1_2_62CV]
          Length = 434

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 116/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ F+E+  N  G E   +              V    E      N +     G   
Sbjct: 1   MNFPKGFEEKYNNLLG-EEAPSFFLTFDEEPVSAFRVNPLKEQQKTFPNPIPNTNWGYYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +SI  + G    + + Q+ +A +  Q+     N+ VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSIEHVTG----LVYSQEPAAQMVAQVAAPQQNMKVLDLAAAPGGKSTHLLSYLNN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +            +  FD +++DAPCS  G
Sbjct: 116 TGLLVSNEINPKRSKVLVENIERFGARNVVVTNESAGRLSQVFQGYFDLIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P+ +         + A  QR++L   I  +   G +++S C+   +++E++V  +
Sbjct: 176 MFRKQPEAMEYWSESYPAQCAQLQREILEDTIKMLATNGELIYSTCTWAPEENEQIVDWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L + P+ +  +P  +     I  +         R+ P   +            F    R
Sbjct: 236 LENYPLELVEIPKINGMVAGIHFSETA------RMYPHHFKGEGQ--------FVAKFR 280


>gi|134045502|ref|YP_001096988.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5]
 gi|132663127|gb|ABO34773.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5]
          Length = 277

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 121/264 (45%), Gaps = 26/264 (9%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTL 240
           E    +L    +      L  +   +       S P +  G +++Q  S+ IP       
Sbjct: 29  EDLKKRLEEKGVELEDTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSISSIIPSITLNPT 88

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
            +  +LD+CAAPGGKT  L   + +   + A++++K RL+ LR N++R+      +I  +
Sbjct: 89  KDDDLLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTN 148

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A +   K  FD +L+DAPC+         D    +   DI+  A  Q +L    I  +K 
Sbjct: 149 AVNIDKKLKFDKILLDAPCTGNEI----KDCNRVKTKRDILFCAKRQVELFRTAIEVLKD 204

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S CS + ++ E++V+ +L+++   +EL+ L+   +  I+M       G +++ P
Sbjct: 205 GGELVYSTCSPEIEEDEDIVRYILKNNKN-MELIELSVDDFPGINMIEGEVK-GTLKVIP 262

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                          FF    R++
Sbjct: 263 PNEP-----------FFIAKFRKV 275


>gi|322516806|ref|ZP_08069708.1| NOL1/NOP2/sun family protein [Streptococcus vestibularis ATCC
           49124]
 gi|322124643|gb|EFX96107.1| NOL1/NOP2/sun family protein [Streptococcus vestibularis ATCC
           49124]
          Length = 436

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 112/299 (37%), Gaps = 23/299 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P  F E+  N  G +       +      +       ++      +  +  T     
Sbjct: 1   MQFPSDFIEKYNNLLG-DEAKDFFASFDQEA-VSAYRTNPLKKQQKDFSDAIPETPWGHY 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
            ++          A G+ + Q+ +A +  Q+        VLDL AAPGGK+      + +
Sbjct: 59  GKISGKSADH---ATGLVYSQEPAAQMVAQVAAPAKGSRVLDLAAAPGGKSTHLLSYLDN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +     D      K  FD ++ D PCS  G
Sbjct: 116 TGLLVSNEINPKRSKILVENIERFGARNVVVTNTSADKLAKVFKNYFDTIVFDGPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P+ +     D   + A  Q+ +L  G+  + PGG +++S C+   +++E VV  +
Sbjct: 176 MFRKDPEAIQYWHKDYPSELAQLQKDILSDGLKMLAPGGQLIYSTCTWSPEENEGVVAWI 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L + P  ++LV +         +    +     R+ P   +            F    +
Sbjct: 236 LENYP-DLKLVQIPKWNGMRGGIDFPETA----RMYPHHFKGEGQ--------FVAKFQ 281


>gi|304311817|ref|YP_003811415.1| hypothetical protein HDN1F_21870 [gamma proteobacterium HdN1]
 gi|301797550|emb|CBL45770.1| Hypothetical protein HDN1F_21870 [gamma proteobacterium HdN1]
          Length = 545

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 14/244 (5%)

Query: 158 NFYGKERVLAISDACISPLYIDLTVKFDIETW----AHKLNAVMLPTGGIRLKELPESIV 213
           + +         D+  +   + +    D                 P          + + 
Sbjct: 274 SQWDTAARQRFIDSHTARPPLYIRPLPDKTEEVFTDLRDNGLTATPLEKALCITGSKGLY 333

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALD 270
            L  + +G + +QD ++    +           D CA  GGK+ Q    +     V A D
Sbjct: 334 ELESYQQGWFEIQDLASQAIGEHVAAKPGELGWDACAGGGGKSMQLASAMQGKGAVYASD 393

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIR 323
           + + +L+++R    R  L+                     +  FD VLVDAPCSS+GT R
Sbjct: 394 IREYKLDEIRRRAQRAQLHNIRTFVWQGEPLDRLPTAVAKRGGFDWVLVDAPCSSSGTWR 453

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R+PD  W  D   + +    Q KLL      V+PGG VV+S CS   +++E++V   L  
Sbjct: 454 RNPDARWRIDESQLAEITALQAKLLASAALSVRPGGRVVYSTCSFFVEENEQIVAAFLEQ 513

Query: 384 SPIP 387
            P  
Sbjct: 514 HPEF 517


>gi|326692539|ref|ZP_08229544.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc
           argentinum KCTC 3773]
          Length = 482

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 34/245 (13%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
            + Q+ SA    ++        VLDL AAPGGKT      +     + A ++   R + L
Sbjct: 78  VYSQEPSAQFVGEVLQPKPGERVLDLAAAPGGKTTHLAAFMQQEGLLWANEIFMNRAKVL 137

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R+ +    +      +   K    FD +L+DAPCS  G  R++P  +     D  
Sbjct: 138 SENIERMGVQNSIVSSHAPAELSAKLPQFFDKILLDAPCSGEGMFRKNPAAVAQWHQDFP 197

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + A  QR++L + +  ++PGG +V+S C+   ++ E+++  +++  P  ++LVP++   
Sbjct: 198 QELADLQREILREAMKMLRPGGQIVYSTCTFAPEEDEQMIAWLMQEYP-EMQLVPIDKPA 256

Query: 398 WKSIDMAMALSP--------------------EGWIRITPDMLEKIDGVSSGMDGFFAVA 437
              +                            EG  R+ P  L+          G FA  
Sbjct: 257 HTHVQDGRPAWADQAYTAGQTTVSTTADLTVLEGTARLWPQALQGE--------GHFAAK 308

Query: 438 LRRLI 442
           L +  
Sbjct: 309 LEKAA 313


>gi|294677285|ref|YP_003577900.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter
           capsulatus SB 1003]
 gi|294476105|gb|ADE85493.1| ribosomal RNA small subunit methyltransferase B-2 [Rhodobacter
           capsulatus SB 1003]
          Length = 389

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 134/452 (29%), Gaps = 74/452 (16%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+ ++  L   +         L        F      D+  VR  V   LR  
Sbjct: 1   MTP--AARIAAAITLLDAIAAGEPAERALTNWGRAHRFAG--SGDRAAVRDHVYDALRCR 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
               A+                   L +    +      D A V      A      +  
Sbjct: 57  GSFAALGGAADGRG-----------LMLG---MCRAAGIDPATVFTGAGHAPAPLLPQEV 102

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAISDACISPLYI 178
           A     +         +           P+W   +L        + V  +  A       
Sbjct: 103 AAFAAPLPEAADLAARDW----------PDWLLPQLRADLGADFDAVSDVMRARAPVFLR 152

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLK-------ELPESIVSLPGFAEGVWWVQDASAS 231
               +  +   A  L    + T    L             I +   + +G+  +QD ++ 
Sbjct: 153 VNLARASLAEAAQALAQEGIGTEPHPLAASALRVLSGARRIAAAQAYLQGLVELQDVASQ 212

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLY 289
             +          VLD CA  GGK   L  +    ++TA D+   R++ +     R    
Sbjct: 213 AVLSGLALPEAARVLDYCAGGGGKALALAAAHPGARITAHDIDAGRMKDIPPRAARAGAR 272

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                           +FD VLVDAPCS +GT RR P+  W      + +    Q ++L 
Sbjct: 273 IAQAAPGKV-----AGVFDLVLVDAPCSGSGTWRRTPEAKWRLTPARLAELTALQDQILE 327

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +  + V PGG +++  CSL   +++  +   +R     +                     
Sbjct: 328 RAAAHVAPGGQLLYMTCSLLAAENDARLSAFVRRGGFALAE------------------- 368

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                       +      G DGFFA  LRRL
Sbjct: 369 -----------RRSYSPRDGGDGFFAGLLRRL 389


>gi|330685487|gb|EGG97140.1| NOL1/NOP2/sun family protein [Staphylococcus epidermidis VCU121]
          Length = 198

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 21/214 (9%)

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287
                +     N SVLD C+APGGK   +         V A D+   +++ +  N+ +L 
Sbjct: 1   MFVAHIMDLNRNDSVLDACSAPGGKACHIAEILSPEGHVDATDIHDHKIKLIDFNIRKLR 60

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           L   +  + DA +      +D +LVDAPCS  G +R  P++ +T+  + I      Q ++
Sbjct: 61  LKNIEAYQHDATE-PYVTQYDKILVDAPCSGFGVLRHKPEIKYTQSKNSIQSLVELQLQI 119

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L      VKPGG +++S C++++ ++E VV   L+ +    E  P        +      
Sbjct: 120 LENVKHNVKPGGSIIYSTCTIEQMENENVVYTFLKQNK-DFEFEPFQHPMTGEMV----- 173

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                ++I P             DGFF   ++R 
Sbjct: 174 ---KTLQIFPQDY--------HSDGFFIARIKRK 196


>gi|291541096|emb|CBL14207.1| tRNA and rRNA cytosine-C5-methylases [Roseburia intestinalis XB6B4]
          Length = 493

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 103/282 (36%), Gaps = 27/282 (9%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG------ 238
             E     L  V     G   ++        P    GV+++Q+ SA  PV          
Sbjct: 45  MKEKVPFSLQPVAWAKDGFYYEKDDTP-GRHPLHEAGVYYIQEPSAMAPVSYLMEDYDVV 103

Query: 239 ----TLNNLSVLDLCAAPGGKTAQ------------LIVSGAKVTALDVSKRRLEKLRCN 282
                     +LDLCAAPGGK+ Q                   +   ++   R + L  N
Sbjct: 104 QKEAADCQERILDLCAAPGGKSTQIAARMHEMYTSGKWKEQGLLICNEIHPARAKILSEN 163

Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           ++R+ +    +            +  F  +LVDAPCS  G  R++       + +++   
Sbjct: 164 VERMGIANAMVTNESPQRLAEVFEDYFTRILVDAPCSGEGMFRKNEAACEEWNPENVRLC 223

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  Q ++L    S + PGG +V+S C+    ++E  + + L   P    +    +    +
Sbjct: 224 AERQDEILDCAASMLAPGGRIVYSTCTFAPAENEGSMTRFLLRHPEFHIVEVKKAEGMSA 283

Query: 401 IDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFAVALRR 440
                A   E   ++ P++ +  ++       +G +   L +
Sbjct: 284 GVPEWAYFGEKMGQVLPEIAQTIRLWPQHLKGEGHYLAVLEK 325


>gi|297618702|ref|YP_003706807.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
 gi|297377679|gb|ADI35834.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
          Length = 322

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 149/329 (45%), Gaps = 31/329 (9%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA--CISPLYIDLT-VK 183
            ++++   K ++ +       +P+   E  +     E     ++     +  YI +  ++
Sbjct: 11  DIKKMREMKDKIRKDNKIELDLPKNSDESYDKSIYGEENSDENNNAEFQNYKYIRVNTLQ 70

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLF 237
              E    +L    +      L    +      S+ + P +  G +++Q  S+ +PV   
Sbjct: 71  IAPEELKKRLENKKVVLEDTFLDYAFKVVSSPFSVGATPEYLYGYYFMQSISSMVPVIAL 130

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
               N  +LD+CAAPGGKT  +     +   + A++V+K R+  L  N++R+ +     I
Sbjct: 131 NPQKNERILDMCAAPGGKTTHIAQLLENEGVIFAVEVNKNRIRSLTSNVNRMGIKDVVTI 190

Query: 295 EMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D+ +   ++L  FD +L+DAPC+       + D    ++  DI+  +  Q++L+   I
Sbjct: 191 NTDSVNLKSEELGLFDKILLDAPCTGNA----YKDSSRIKNRSDILFCSNRQKELIHTAI 246

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
           + +K GG +V+S CS + ++ EEV+  ++      VEL+ L+   +K +++  AL   G 
Sbjct: 247 NLLKSGGELVYSTCSPEIEEDEEVISHIVNLR-NDVELIKLDKNDYKGLNIQDALIK-GT 304

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++I P               F+   L++L
Sbjct: 305 LKILPPNEP-----------FYIAKLKKL 322


>gi|260939708|ref|XP_002614154.1| hypothetical protein CLUG_05640 [Clavispora lusitaniae ATCC 42720]
 gi|238852048|gb|EEQ41512.1| hypothetical protein CLUG_05640 [Clavispora lusitaniae ATCC 42720]
          Length = 730

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 96/266 (36%), Gaps = 43/266 (16%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272
              Q+A + IP  L     + +VLD+CAAPG KTAQ             +   V A D  
Sbjct: 156 ISRQEAVSMIPPLLMDVQPHHAVLDMCAAPGSKTAQLVEALHAKDAETPASGFVIANDSD 215

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAF--------DYCPKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA          +     FD +L D PCS  GT+R+
Sbjct: 216 YKRSHMLVHQVKRLNSPNFLVVNHDAQLFPRVQLEKHSEHIKFDRILCDVPCSGDGTMRK 275

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       D +     Q  +L +G+  +K GG +V+S CS+   ++E VV + LR  
Sbjct: 276 NINVWKDFTVADGMGLHPLQVNILSRGLQLLKEGGRLVYSTCSMSPIENEAVVAEALRRF 335

Query: 385 P-------------------------IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           P                            EL             A   S E       D 
Sbjct: 336 PQASLVDVSAELPGLKRRAGVSSWKVFNKELEEKQKGDEGVHATAFPPSEEEAQAFHLDR 395

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQPK 445
             ++        GFF     +  + +
Sbjct: 396 CVRVYPHLQNTGGFFITVFEKKPKAE 421


>gi|290890632|ref|ZP_06553703.1| hypothetical protein AWRIB429_1093 [Oenococcus oeni AWRIB429]
 gi|290479760|gb|EFD88413.1| hypothetical protein AWRIB429_1093 [Oenococcus oeni AWRIB429]
          Length = 458

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 113/298 (37%), Gaps = 22/298 (7%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
           ++  L             +A        L       +   +         G   K   ES
Sbjct: 12  YRRLLGKEADDFLASFQMEADNGFHLNPLKDLRQFASLKRQAPIPWNRENGRYGKIFGES 71

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
           +     F  GV + Q+ SA    ++        +LDL AAPGGK+ Q    + +   + A
Sbjct: 72  V----AFLSGVAYSQEPSAQFVARVVDAQPGEKILDLAAAPGGKSTQIAADMNNQGLLIA 127

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
            ++S  R + L  N++R  +    +     D      +  FD +L+DAPCS  G  R+ P
Sbjct: 128 NEISFSRAKILSENIERSGITNCIVTNHRPDELAEHFENYFDKILLDAPCSGEGMFRKDP 187

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             +    +D   + A  Q+++L   +S ++P G +++S C+   ++ E+++  +L +   
Sbjct: 188 QAIKYWHSDYSSECANRQKEILKSVLSMLRPNGQLIYSTCTFAPEEDEQIMAWLLDNY-S 246

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALRR 440
            + L+ +                   +    R+ P+ ++          G F   L +
Sbjct: 247 ELSLLKIRKKDGIEDGRPQWADGNRELKNTARLWPNKIKGE--------GHFVARLIK 296


>gi|253580234|ref|ZP_04857500.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848327|gb|EES76291.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 467

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 18/270 (6%)

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
             D E  +      +         +        P +  G++++Q+ SA  P         
Sbjct: 48  CEDFENLSPFPTRQIPWIKNGYFYDEDIRPSRCPYYQAGLYYLQEPSAMTPASRIPIEPG 107

Query: 243 LSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             VLDLCAAPGGK      +      + A D+S  R   L  NL+   +    +      
Sbjct: 108 DRVLDLCAAPGGKATAAGAALQGQGLLVANDISTSRARALLRNLELFGIPNVFVANETPA 167

Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                    FD +++DAPCS  G  R+   +      +  ++ +  Q++L+LQ    ++P
Sbjct: 168 KLTKAFPEFFDKIILDAPCSGEGMFRKEEALAKDWTPEKSMELSEIQKELILQAADMLRP 227

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWI 413
            G++++S C+    + E+ V  +L + P  +EL  +      S  +    +        I
Sbjct: 228 DGLMLYSTCTFAPAEDEQTVSWLLENRP-DMELAEMEDYEGFSHGVPEWGNGNPELIKCI 286

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           RI P  +          +G F     +  Q
Sbjct: 287 RIFPHKM--------NGEGHFLALFHKKGQ 308


>gi|253566110|ref|ZP_04843564.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_2_5]
 gi|251945214|gb|EES85652.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_2_5]
          Length = 472

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 115/304 (37%), Gaps = 19/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E      G E    +S A        + +       A   +           
Sbjct: 1   MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60

Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260
             L + +     P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+     
Sbjct: 61  YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
               G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS
Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVVVTNNDPSDFSRIGSFFDVILTDVPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE +
Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240

Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
             +        E +PL   A W      +        R  P   +          GFF  
Sbjct: 241 TWI--RQEFGAEPLPLAVPAEWNITGSLLVGVDAPVYRFLPHKTQGE--------GFFLA 290

Query: 437 ALRR 440
           ALR+
Sbjct: 291 ALRK 294


>gi|150402304|ref|YP_001329598.1| NOL1/NOP2/sun family RNA methylase [Methanococcus maripaludis C7]
 gi|150033334|gb|ABR65447.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
           maripaludis C7]
          Length = 265

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 26/278 (9%)

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQ 226
                   T+K   E    +L    +      L  +   +       S P +  G +++Q
Sbjct: 3   NLQFIRTNTLKISSEDLKKRLEEKGVVLEDTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQ 62

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283
             S+ IP        +  VLD+CAAPGGKT  L   + +   + A++++K RL+ LR N+
Sbjct: 63  SISSIIPSITLNPSKDDDVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNI 122

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           +R+      +I  +A +   K  FD +L+DAPC+       +      +   DI+  A  
Sbjct: 123 NRMGFKNTLMINTNAVNLDKKLRFDKILLDAPCTGNEIKDSNRV----KTKRDILFCAKR 178

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q +L    I  +K GG +V+S CS + ++ E++V+ +L+++   +EL+ LN   +  I+M
Sbjct: 179 QVELFRTAIEVLKDGGELVYSTCSPEIEEDEDIVRYILKNNKN-IELIELNVDDFLGINM 237

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  G +++ P               FF    R++
Sbjct: 238 IEGEVK-GTLKVIPPNEP-----------FFIAKFRKV 263


>gi|323127362|gb|ADX24659.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 435

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 114/300 (38%), Gaps = 25/300 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F +   +  G E    ++            V         K +          L
Sbjct: 1   MPLPKEFIDTYHSILGHETQAFLASFQQEA------VNAFRVNSLKKQSKSFEDPIPNTL 54

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      + 
Sbjct: 55  WGYYGKVSGKSPEHVSGLVYSQEPAAQMVAQVAAPKKGSRVLDLAAAPGGKSTHLLSYLD 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + + ++SK+R + L  N++R       ++    +       + FD ++ D PCS  
Sbjct: 115 NTGLLVSNEISKKRSKILVENIERFGARNVIVMNESANRLAKVFTQYFDMIVFDGPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +     D   + A  Q+ +L   +S +KPGG ++++ C+   +++E VV+ 
Sbjct: 175 GMFRKDPDAIQYWHQDYPAECAALQKSILEDTLSMLKPGGELIYATCTWSLEENEGVVKW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L +    +ELV +         +  +       R+ P   +            F    +
Sbjct: 235 LLETY-DFLELVDIPKVNGMVEGIGFSEPA----RMYPHRYKGEGQ--------FVAKFK 281


>gi|322411868|gb|EFY02776.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 435

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 115/300 (38%), Gaps = 25/300 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F +   +  G E    ++            V         K +          L
Sbjct: 1   MPLPKEFIDTYHSILGHETQAFLASFQQEA------VNAFRVNPLKKQSKSFEDPIPNTL 54

Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      + 
Sbjct: 55  WGYYGKVSGKSPEHVSGLVYSQEPAAQMVAQVAAPKKGSRVLDLAAAPGGKSTHLLAYLD 114

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + + ++SK+R + L  N++R       ++    D       + FD ++ D PCS  
Sbjct: 115 NTGLLVSNEISKKRSKILVENIERFGARNVIVMNESADRLAKVFTQYFDMIVFDGPCSGE 174

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ PD +     D  ++ A  Q+ +L   +S +KPGG ++++ C+   +++E VV+ 
Sbjct: 175 GMFRKDPDAIQYWHQDYPIECAFLQKSILEDTLSMLKPGGELIYATCTWSLEENEGVVKW 234

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L +    +ELV +         +  +       R+ P   +            F    +
Sbjct: 235 LLETY-DFLELVDIPKINGMVEGIGFSEPA----RMYPHRYKGEGQ--------FVAKFK 281


>gi|190344556|gb|EDK36247.2| hypothetical protein PGUG_00345 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 674

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 60/271 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272
              Q+A + IP  L     + +V D+CAAPG KTAQ                 V A D  
Sbjct: 158 ISRQEAVSMIPPLLMDIKPHHAVFDMCAAPGSKTAQLVEALHAEDEKKAPTGFVLANDSD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             FD +L D PCS  GT+R+
Sbjct: 218 YKRSHMLVHQVKRLNSPNFMVVNHDAQLFPKIKLNGASEFLKFDRILCDVPCSGDGTMRK 277

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  +K GG +V+S CSL   ++E VV   LR  
Sbjct: 278 NVNVWKDFTVGNALGLHSLQVNILNRGLQLLKKGGRLVYSTCSLSPVENEAVVAAALRKW 337

Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410
              ++LV  +                                   A+  S   A     E
Sbjct: 338 GAQIKLVNCDDELPGLVRRKGLSTWKVLGKDMEEKEKGAEGIPETAFPPSETEAGEFHLE 397

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             IR+ P +            GFF     ++
Sbjct: 398 NCIRVYPHLQ--------NTGGFFITVFEKI 420


>gi|154504971|ref|ZP_02041709.1| hypothetical protein RUMGNA_02481 [Ruminococcus gnavus ATCC 29149]
 gi|153794854|gb|EDN77274.1| hypothetical protein RUMGNA_02481 [Ruminococcus gnavus ATCC 29149]
          Length = 462

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 19/271 (7%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           ++V+  ++     L  V   + G             P +  G++++Q+ SA  P      
Sbjct: 43  ISVEDFLKIAPWPLRPVPWISNGFYYDGDQIQPAKHPYYFAGLYYLQEPSAMTPADRLLI 102

Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--I 294
                VLD+CAAPGGK  +    +     + A D+S  R + L  N++   +    +   
Sbjct: 103 EPGDRVLDVCAAPGGKATELGAKLQGKGVLMANDISNSRAKGLLKNIELFGIGNMLVLSE 162

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E         + FD +L+DAPCS  G  R+   ++   +       +  QR ++ Q  S 
Sbjct: 163 EPGKLTEYFPEYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFSKIQRSIITQAASM 222

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---- 410
           ++PGG++++S C+ D  ++E+ ++ +L   P   E+  +      +  M      +    
Sbjct: 223 LRPGGMMLYSTCTFDPSENEQTIEYLLEEYP-EFEICEMAGYEGFAPGMPEVTDSKNPNL 281

Query: 411 -GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +RI P  +E          G +   L++
Sbjct: 282 AKTVRIFPHRMEGE--------GHYLALLKK 304


>gi|296876748|ref|ZP_06900796.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis ATCC
           15912]
 gi|296432250|gb|EFH18049.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis ATCC
           15912]
          Length = 434

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 20/260 (7%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                 +   V               +       A G+ + Q+ +A I  Q+      + 
Sbjct: 35  RTNPLKEAQKVFDDPIPNTPWGHYGKVSGKSIEHATGLVYSQEPAAQIVAQVAQPKPGMK 94

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299
           VLDL AAPGGKT Q    + +   + + ++ K R + L  N++R       +     D  
Sbjct: 95  VLDLAAAPGGKTTQLLSYLDNQGLLVSNEIHKGRSKILVENVERFGARNVLVTNESADRL 154

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +++DAPCS  G  R+ PD +     +   + +  QR++L   +  +  GG
Sbjct: 155 AKVFSGFFDLIVLDAPCSGEGMFRKQPDAMDYWSVEYPRECSLLQREILEDALKMLVQGG 214

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+S C+   +++EE+V  +L +  + +E +   +   + ID           R+ P  
Sbjct: 215 SLVYSTCTWAPEENEEIVSWLLENYDLELETIEKINGMAEGIDYPETA------RMYPHR 268

Query: 420 LEKIDGVSSGMDGFFAVALR 439
            +            F    R
Sbjct: 269 FKGEGQ--------FVAKFR 280


>gi|283769352|ref|ZP_06342251.1| NOL1/NOP2/sun family protein [Bulleidia extructa W1219]
 gi|283104009|gb|EFC05393.1| NOL1/NOP2/sun family protein [Bulleidia extructa W1219]
          Length = 437

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 26/259 (10%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L        G   KE  + I     +  G +++Q+ASAS  + L        VLD+CAAP
Sbjct: 55  LKRSPFCPNGAYFKEGIQPIH-FASYRNGGFYMQEASASSVISLLKIQPGDYVLDMCAAP 113

Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307
           G KT Q    +     + + +   +R   L  N+ R  L    ++  D      +    F
Sbjct: 114 GSKTTQIGEYLQQEGLLVSNEYVSKRAMILLENIIRHGLQNALVLNCDTSLLAKEFPSGF 173

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D ++VDAPCS  G   +  D +     D I   A  Q  +L    + ++ GG +++S C+
Sbjct: 174 DKIVVDAPCSGEGLFLKQEDSVQEWSLDHIAVCAKRQASILENAYTCLRKGGDLLYSTCT 233

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
             ++++E++++  L+     +ELVP+   + +   +      E   RI P          
Sbjct: 234 FAREENEDLIEAFLKKH-ADMELVPITVPFGRPGFLPF----EKTRRIFP---------- 278

Query: 428 SGMDGF---FAVALRRLIQ 443
             MDG    F   L +  +
Sbjct: 279 --MDGGTGQFMALLHKKGE 295


>gi|241958548|ref|XP_002421993.1| multisite-specific tRNA:m5c-methyltransferase, putative; tRNA
           (cytosine-5-)-methyltransferase, putative [Candida
           dubliniensis CD36]
 gi|223645338|emb|CAX39994.1| multisite-specific tRNA:m5c-methyltransferase, putative [Candida
           dubliniensis CD36]
          Length = 747

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 101/271 (37%), Gaps = 60/271 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----------SGAKVTALDVS 272
              Q+A + IP  L     +  VLD+CAAPG KTAQLI               V A D  
Sbjct: 189 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLIEALHAEDEKKLPTGFVLANDSD 248

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             FD +L D PCS   T+R+
Sbjct: 249 YKRSHMLVHQVKRLNSPNFLVVNHDATLFPRIRLNNSSQDLKFDRILCDVPCSGDATMRK 308

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  +K GG +V+S CSL   ++E +V   LR  
Sbjct: 309 NLNVWKDFRVGNALGLHNVQELILNRGLQLLKKGGRLVYSTCSLSPIENEAIVASALRKW 368

Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410
              + LV +++                                  A+  + + A     E
Sbjct: 369 GDQIRLVNVDNELPGLKRRKGVSEWKVYGKDMELREPGAEDVPQTAFPPTKEEAEKFHLE 428

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +R+ P +            GFF     ++
Sbjct: 429 NCVRVYPHLQ--------NTGGFFITVFEKV 451


>gi|302871979|ref|YP_003840615.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574838|gb|ADL42629.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 455

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 126/307 (41%), Gaps = 19/307 (6%)

Query: 146 SIIPEWFKERLENF--YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200
             +PE F  +++       E+ + I +      +   T K  +E +  K+      +   
Sbjct: 1   MNLPEEFLSKMKEILKEEFEQFIKIYEFDSYKGFRVNTAKVSVEEFVEKMGIEFEKVPWC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
                      +   P +  G+ ++Q+ SA  PV+         VLDLCAAPGGK+ Q  
Sbjct: 61  KDGFYYTEEIKLSKHPYYFAGLIYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315
             +     + + DV   R++ L  N++ L L    ++     +        FD +LVDAP
Sbjct: 121 ARLGQNGLLVSNDVKPTRIKALVKNVENLGLTNVVVLNNKPKEIAESYGAYFDKILVDAP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P       ++   K    QR ++ +    +K GG +V+S C+ + +++EE
Sbjct: 181 CSGEGMFRKDPTTAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEIEENEE 240

Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           ++   L+      V  +     +   I++    + +  +RI P  +           G F
Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAVRIYPHRVRGE--------GHF 292

Query: 435 AVALRRL 441
              L+++
Sbjct: 293 ICKLKKV 299


>gi|251782474|ref|YP_002996776.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391103|dbj|BAH81562.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 436

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 116/301 (38%), Gaps = 25/301 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P+ F +   +  G E    ++            V         K +          
Sbjct: 1   MMPLPKEFIDTYHSILGHETQAFLASFQQEA------VNAFRVNPLKKQSKFFEDPIPNT 54

Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260
           L      +    P    G+ + Q+ +A +  Q+        VLDL AAPGGK+      +
Sbjct: 55  LWGYYGKVSGKSPEHVSGLVYSQEPAAQMVAQVAAPKKGSRVLDLAAAPGGKSTHLLSYL 114

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318
            +   + + ++SK+R + L  N++R       ++    +       + FD ++ D PCS 
Sbjct: 115 DNTGLLVSNEISKKRSKILVENIERFGARNVIVMNESANRLAKVFTQYFDMIVFDGPCSG 174

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ PD +     D   + A  Q+ +L   +S +KPGG ++++ C+   +++E VV+
Sbjct: 175 EGMFRKDPDAIQYWHQDYPAECAALQKSILEDTLSMLKPGGELIYATCTWSLEENEGVVK 234

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +L +    +ELV +  A      +  +       R+ P   +            F    
Sbjct: 235 WLLETY-DFLELVDIPKANGMVEGIGFSELA----RMYPHRYKGEGQ--------FVAKF 281

Query: 439 R 439
           +
Sbjct: 282 K 282


>gi|291087690|ref|ZP_06572059.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1]
 gi|291074339|gb|EFE11703.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1]
          Length = 565

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 128/337 (37%), Gaps = 29/337 (8%)

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177
               +          E            ++PE F+E++    GKE    +          
Sbjct: 73  SLRGVRPETGDSAETEIRTENAPGCRAELLPEDFREKMRKLLGKEYEAYLESFEKPCHNG 132

Query: 178 IDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           + +          ++L+         +          E  E     P +  G++++Q+ S
Sbjct: 133 LRVNTMKLSAEDWNRLSPFQTEPVPWIENGFYYYASDEGSERPSRYPYYYAGLYYLQEPS 192

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRL 286
           A  P  L        VLD+CAAPGGK+ +L         + + D+S  R + L  NL+  
Sbjct: 193 AMTPANLLPVKPGDRVLDICAAPGGKSTELGARLGGEGLLFSNDISNSRAKALLKNLEMA 252

Query: 287 HLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
            +    +               FD +LVDAPCS  G  RR PD++ +            Q
Sbjct: 253 GIPNICVSSEAPEKLSEFLPEFFDCILVDAPCSGEGMFRREPDMIKSYRERGPEDYVPLQ 312

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDM 403
           R ++ + +  ++PGG +++S C+ D++++E  ++ +L   P   +  +P    + + I M
Sbjct: 313 RAIMEEAVKMLRPGGYLLYSTCTFDREENEGTIRYILDRHPDMSLCSLPHRHGFAEGIGM 372

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    +R+ P  +E          G F   LRR
Sbjct: 373 PE------CVRLFPHRIEGE--------GHFVALLRR 395


>gi|224025682|ref|ZP_03644048.1| hypothetical protein BACCOPRO_02422 [Bacteroides coprophilus DSM
           18228]
 gi|224018918|gb|EEF76916.1| hypothetical protein BACCOPRO_02422 [Bacteroides coprophilus DSM
           18228]
          Length = 480

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 124/302 (41%), Gaps = 16/302 (5%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  +P  F  R     G+E   A+ +A      + + +     +     +  +       
Sbjct: 1   MMNLPAEFMARTRQLMGEEACTALCEALQQESPVSIRLNPLKSSGIPAGSKPVAWCRDGY 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQLI-- 260
                 +    P F  GV++VQ+A++     V          +LDLCAAPGGK+      
Sbjct: 61  YLSERPAFTFDPLFHAGVYYVQEAASMSLDLVMRRYVGRPSVMLDLCAAPGGKSTLAAAA 120

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318
              G+ + + +V + R + L  NL +    A  +   D  D+ P   +FD +L D PCS 
Sbjct: 121 LPQGSLLVSNEVMRNRSQVLAENLVKWGNPAGIVTSNDPADFTPLGPVFDVILTDVPCSG 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +     D++      Q+++L      +KPGG++++S C+ +++++E+ V 
Sbjct: 181 EGMFRKDPVAVEEWSVDNVGLCWQRQQRILRDIWPCLKPGGLLIYSTCTYNREENEDNVA 240

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + R     +  VP+  ++  + ++     P    R  P              G F   L
Sbjct: 241 WIARELGAEILPVPVEESWQITGNLTGQDFP--VCRFLPHKTCGE--------GLFLAVL 290

Query: 439 RR 440
           R+
Sbjct: 291 RK 292


>gi|146325703|sp|A1RIZ0|RSMF_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|257096820|sp|A4Y7J8|RSMF_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 486

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 21/257 (8%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 74  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDLASAPGSKTTQ 133

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 134 IAALMHNSGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     +D++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 194 APCGGEGTVRKDADALKHWSLNDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + ++    V+   L+  +        A +PEG++ + P + +          GF
Sbjct: 254 QGVCEYLKQTYGDAVQFESLSDLFE---GAERATTPEGFLHVWPQIYDSE--------GF 302

Query: 434 FAVALRRLI-----QPK 445
           F   L +       QP+
Sbjct: 303 FVAKLTKTASVPRLQPE 319


>gi|302347987|ref|YP_003815625.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
           345-15]
 gi|302328399|gb|ADL18594.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
           345-15]
          Length = 335

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 32/319 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH----------K 192
           A       +  ER     G +    + +A   P+   L       +             +
Sbjct: 28  AQKYGYLPYIVERYLELLG-DEAEDLLEANEVPMPETLRCNDFKISCGELESRLGEAGFE 86

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L  V     G  +   P S  +   + +G +++QD  + + V +     + ++LD+ AAP
Sbjct: 87  LERVPFLPHGYHVISSPISPGATHEYLKGYYYLQDPGSMLIVYVMNPRPSATILDMAAAP 146

Query: 253 GGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           GGK+ Q++          A++  + R++ LR NL R+      +I  DA           
Sbjct: 147 GGKSTQILQLTRDSSLLIAVEPKRERIKALRSNLQRMGFSNYILIRSDARFLSLDTKPAQ 206

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAP S  G IR+  +        D+ +    Q +LL + +S V PGG V ++ CS  
Sbjct: 207 VLLDAPSSGEGIIRKDKNRKTKTSISDLRRIHELQVELLNRALSIVSPGGTVTYAACSTA 266

Query: 370 KQDSEEVVQKVLR-------SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
            ++ E  V KVL          P      PL+  + +   +      +G  R+ P     
Sbjct: 267 VEEGEYTVHKVLADKDYVTTERPFGF---PLSKPFEEYRGVIFDDRVKGCGRLFPH---- 319

Query: 423 IDGVSSGMDGFFAVALRRL 441
                 G +GFF   LRRL
Sbjct: 320 ----KQGTEGFFICKLRRL 334


>gi|301164440|emb|CBW23998.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 472

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 19/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E      G E    +S A        + +       A   +           
Sbjct: 1   MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60

Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260
             L + +     P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+     
Sbjct: 61  YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
               G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS
Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVVVTNNDPSDFSRIGSFFDVILTDVPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE +
Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240

Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
             +        E +PL     W      +        R  P   +          GFF  
Sbjct: 241 TWI--RQEFGAEPLPLAVPTEWNITGSLLVGVDAPVYRFLPHKTQGE--------GFFLA 290

Query: 437 ALRR 440
           ALR+
Sbjct: 291 ALRK 294


>gi|60682975|ref|YP_213119.1| hypothetical protein BF3517 [Bacteroides fragilis NCTC 9343]
 gi|60494409|emb|CAH09205.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 472

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 19/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E      G E    +S A        + +       A   +           
Sbjct: 1   MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60

Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260
             L + +     P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+     
Sbjct: 61  YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
               G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS
Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVVVTNNDPSDFSRIGSFFDVILTDVPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE +
Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240

Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
             +        E +PL     W      +        R  P   +          GFF  
Sbjct: 241 TWI--RQEFGAEPLPLAVPTEWNITGSLLVGVDAPVYRFLPHKTQGE--------GFFLA 290

Query: 437 ALRR 440
           ALR+
Sbjct: 291 ALRK 294


>gi|120598615|ref|YP_963189.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp.
           W3-18-1]
 gi|146293306|ref|YP_001183730.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
           putrefaciens CN-32]
 gi|120558708|gb|ABM24635.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp.
           W3-18-1]
 gi|145564996|gb|ABP75931.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella
           putrefaciens CN-32]
 gi|319426606|gb|ADV54680.1| RNA methylase, NOL1/NOP2/sun family [Shewanella putrefaciens 200]
          Length = 505

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 21/257 (8%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 93  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDLASAPGSKTTQ 152

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 153 IAALMHNSGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     +D++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 213 APCGGEGTVRKDADALKHWSLNDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + ++    V+   L+  +        A +PEG++ + P + +          GF
Sbjct: 273 QGVCEYLKQTYGDAVQFESLSDLFE---GAERATTPEGFLHVWPQIYDSE--------GF 321

Query: 434 FAVALRRLI-----QPK 445
           F   L +       QP+
Sbjct: 322 FVAKLTKTASVPRLQPE 338


>gi|166031892|ref|ZP_02234721.1| hypothetical protein DORFOR_01593 [Dorea formicigenerans ATCC
           27755]
 gi|166028345|gb|EDR47102.1| hypothetical protein DORFOR_01593 [Dorea formicigenerans ATCC
           27755]
          Length = 461

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 128/312 (41%), Gaps = 27/312 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-------KLNAVML 198
             +PE F++++ +   ++    I+     P Y  L V  +  +          ++  +  
Sbjct: 1   MRLPENFEKKMRDLLKEDFDDYIACY-EEPRYYGLRVNTNKISVEEFKKICPFEIEPIPW 59

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
              G        +    P +  G++++Q+ SA  P           VLD+CAAPGGK  +
Sbjct: 60  IENGFYYDGEHVTPSKHPYYFAGLYYLQEPSAMTPANRLPVEPGDKVLDVCAAPGGKATE 119

Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVD 313
               +     + A D+S  R + L  N++   +    +   E    +    + FD +L+D
Sbjct: 120 LGAKLQGEGVLAANDISNSRAKGLLKNIEVFGIGNVLVLSEEPGKMESYFTEYFDKILID 179

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS  G  R+   ++   +          Q+ ++LQ    +K GG++++S C+ D +++
Sbjct: 180 APCSGEGMFRKDKKMVSAWEEHGPDFFCNIQKSIILQAARMLKQGGMMLYSTCTFDPKEN 239

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-----ALSPEGWIRITPDMLEKIDGVSS 428
           E+V++ +L++ P    ++ +         M         S    +RI P  ++       
Sbjct: 240 EQVIEHLLKTYP-EFRILKIAPYEGFVQGMPEVTESRDPSLADTVRIFPHKMKGE----- 293

Query: 429 GMDGFFAVALRR 440
              G +   +++
Sbjct: 294 ---GHYLALVQK 302


>gi|290580429|ref|YP_003484821.1| hypothetical protein SmuNN2025_0903 [Streptococcus mutans NN2025]
 gi|254997328|dbj|BAH87929.1| conserved hypothetical protein [Streptococcus mutans NN2025]
          Length = 434

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 116/298 (38%), Gaps = 25/298 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           +P+ F E+ +   G +    +      P++   T     E    +        G      
Sbjct: 3   LPDKFVEKYQTILGSKAKTFLKSFDQEPIWAFRTNPLKKEQLLFEDAIPNTVWGHYGKVF 62

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264
              +         G+ + Q+ +A + VQ       + VLDL AAPGGKT      + +  
Sbjct: 63  GKSA-----EHVSGLVYSQEPAAQMVVQAAAPQKGMKVLDLAAAPGGKTTHLLSYLDNSG 117

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTI 322
            + + D+SK+R   L  N++R       +      +        FD +++DAPCS  G  
Sbjct: 118 ILVSNDISKKRSRILVENVERFGARNVVVTNESPQNLAKVFGNYFDLIVLDAPCSGEGMF 177

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+ P  +        V+ A  Q+K+L + +  +  GG +V+S C+   +++E V++ +L 
Sbjct: 178 RKDPAAIQYWHEAYPVECAELQKKILAEAMKMLAAGGKLVYSTCTWAPEENEAVIRWLLS 237

Query: 383 SSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                 +  VP  +   + IDM          R+ P + +            F   LR
Sbjct: 238 QYDYLELVNVPKLNGMVQGIDMPQVA------RMYPHLFKGEGQ--------FIAKLR 281


>gi|326917198|ref|XP_003204888.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like
           [Meleagris gallopavo]
          Length = 791

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 120/359 (33%), Gaps = 64/359 (17%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
                   L+  Y +E      D     +   L+   +   W   L+  +L       + 
Sbjct: 81  HAREILHCLKEKYFRELQHLEVDGQKVEMPQALSWYPEELAWHTNLSRKILRKSPQLERF 140

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------A 257
               +        G    Q+A + IP  L     +  +LD+CAAPG KT           
Sbjct: 141 HQFLVSETE---CGNISRQEAVSMIPPLLLNVNPDHKILDMCAAPGSKTAQLIEMLHADM 197

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307
            +      V A DV  +R   L     RL+     ++  DA                  +
Sbjct: 198 NVPFPKGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQIDVDGRKEILFY 257

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG +V+S CS
Sbjct: 258 DRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCS 317

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-------------- 413
           L+  ++E V+  +L  S   +EL  ++S       M      +  +              
Sbjct: 318 LNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPS 377

Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
               +I P M                  +I        GFF   L +         QPK
Sbjct: 378 NRQTQIRPTMFPIKEEEKLKAMNLERCIRILPHHQNTGGFFVAVLIKKSPMPWNKRQPK 436


>gi|296089949|emb|CBI39768.3| unnamed protein product [Vitis vinifera]
          Length = 208

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 20/171 (11%)

Query: 286 LHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           + +    +   D  +          D VL+DAPCS TG I +   V  ++  +DI K A 
Sbjct: 1   MGVTNTVVCNYDGKELPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAH 60

Query: 343 FQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNS 395
            Q++L+L  I  V    K GG +V+S CS+   ++E V+   L+   + +    L     
Sbjct: 61  LQKQLILAAIDMVDANSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRP 120

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL--IQP 444
            + +  +     S E   R  P +          MDGFF   L+++   +P
Sbjct: 121 GFTRFREHRFHQSLEKTRRFYPHV--------HNMDGFFVAKLKKMSNSKP 163


>gi|110668543|ref|YP_658354.1| tRNA and rRNA cytosine-C5-methylases [Haloquadratum walsbyi DSM
           16790]
 gi|109626290|emb|CAJ52748.1| tRNA and rRNA cytosine-C5-methylases [Haloquadratum walsbyi DSM
           16790]
          Length = 312

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 103/267 (38%), Gaps = 31/267 (11%)

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
             +   +G  +L+     I   P F  G    Q+  + +P           V D CAAPG
Sbjct: 53  EPIGWHSGLFKLETNRPGIS-WPYFH-GWLHGQEEVSVLPALAVDPDPGEIVWDACAAPG 110

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL---- 306
            KT QL   +     V   D +  RL  LR N +RL +    +   DA ++         
Sbjct: 111 SKTTQLAALMDDTGVVIGNDNNLGRLSALRHNAERLGVTNLVVTNQDARNFSFNPFGGRT 170

Query: 307 --------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                   FD  LVDAPCS  GTIR++PD       + ++     Q+ +L + +   +PG
Sbjct: 171 ERANRIEAFDHALVDAPCSCEGTIRKNPDAFEQWSREHVMSVVAIQKDILRRAVQATRPG 230

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------EGW 412
           G VV+S C+   +++E VV  VL S    V      + +     +    +       E  
Sbjct: 231 GTVVYSTCTFAPEENEGVVNHVLESESCRVVQWNPPAGFKTISGITHWDNESYDPSMELT 290

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALR 439
            R+ P          +   GFF   L 
Sbjct: 291 HRVYPHH--------NDTGGFFCAKLE 309


>gi|146422052|ref|XP_001486968.1| hypothetical protein PGUG_00345 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 674

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 60/271 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272
              Q+A + IP  L     + +V D+CAAPG KTAQ                 V A D  
Sbjct: 158 ISRQEAVSMIPPLLMDIKPHHAVFDMCAAPGSKTAQLVEALHAEDEKKAPTGFVLANDSD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             FD +L D PCS  GT+R+
Sbjct: 218 YKRSHMLVHQVKRLNSPNFMVVNHDAQLFPKIKLNGASEFLKFDRILCDVPCSGDGTMRK 277

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  +K GG +V+S CSL   ++E VV   LR  
Sbjct: 278 NVNVWKDFTVGNALGLHLLQVNILNRGLQLLKKGGRLVYSTCSLSPVENEAVVAAALRKW 337

Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410
              ++LV  +                                   A+  S   A     E
Sbjct: 338 GAQIKLVNCDDELPGLVRRKGLSTWKVLGKDMEEKEKGAEGIPETAFPPSETEAGEFHLE 397

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             IR+ P +            GFF     ++
Sbjct: 398 NCIRVYPHLQ--------NTGGFFITVFEKI 420


>gi|71896598|ref|NP_001026175.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Gallus gallus]
 gi|82082708|sp|Q5ZLV4|NSUN2_CHICK RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName:
           Full=NOL1/NOP2/Sun domain family member 2
 gi|53128302|emb|CAG31289.1| hypothetical protein RCJMB04_4l11 [Gallus gallus]
          Length = 796

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 120/359 (33%), Gaps = 64/359 (17%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
                   L+  Y +E      D     +   L+   +   W   L+  +L       + 
Sbjct: 86  HAREILHCLKEKYFRELQHLEVDGQKVEMPQALSWYPEELAWHTNLSRKILRKSPQLERF 145

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------A 257
               +        G    Q+A + IP  L     +  +LD+CAAPG KT           
Sbjct: 146 HQFLVSETE---CGNISRQEAVSMIPPLLLNVNPDHKILDMCAAPGSKTAQLIEMLHADM 202

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307
            +      V A DV  +R   L     RL+     ++  DA                  +
Sbjct: 203 NVPFPKGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQVDVDGRKETLFY 262

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG +V+S CS
Sbjct: 263 DRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCS 322

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-------------- 413
           L+  ++E V+  +L  S   +EL  ++S       M      +  +              
Sbjct: 323 LNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPS 382

Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
               +I P M                  +I        GFF   L +         QPK
Sbjct: 383 NRQTQIRPTMFPIKEEEKLKAMNLERCIRILPHHQNTGGFFVAVLIKKSPMPWNKRQPK 441


>gi|255719902|ref|XP_002556231.1| KLTH0H08096p [Lachancea thermotolerans]
 gi|238942197|emb|CAR30369.1| KLTH0H08096p [Lachancea thermotolerans]
          Length = 688

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 104/262 (39%), Gaps = 43/262 (16%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--------IVSGAKVTALDVSKR 274
              Q+A + IP  +    ++ SVLD+CAAPG KTAQ+              V A D   R
Sbjct: 147 ISRQEAVSMIPPIVLEVESHHSVLDMCAAPGSKTAQMIEALHSSEDEPTGFVVANDADAR 206

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC---------PKKLFDAVLVDAPCSSTGTIRRH 325
           R   L   L RL+     ++  DA  +              FD +L D PCS  GT+R++
Sbjct: 207 RSHMLVHQLKRLNSANLVVVNHDAQFFPRVKTDKETNQFLKFDRILCDVPCSGDGTMRKN 266

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            +V     T   +     Q  +L +G++ +K GG +V+S CS++  ++E VV   LR   
Sbjct: 267 VNVWKDWGTASGLGLHTVQLNILKRGLNLLKKGGRLVYSTCSMNPIENEAVVAAALRQWG 326

Query: 386 IPVELVPLNS-----------AYWKSIDMAMALSPEGW---------------IRITPDM 419
             ++LV  +            + W  ID A     +G                     D 
Sbjct: 327 DKIKLVDCSDKLPGLVRSKGISNWPVIDKAFEKKEKGDEGTTESWFPPSAEEAADFHLDR 386

Query: 420 LEKIDGVSSGMDGFFAVALRRL 441
             ++        GFF   + ++
Sbjct: 387 CIRVYPHQQNTGGFFITVIEKV 408


>gi|328955327|ref|YP_004372660.1| Fmu (Sun) domain protein [Coriobacterium glomerans PW2]
 gi|328455651|gb|AEB06845.1| Fmu (Sun) domain protein [Coriobacterium glomerans PW2]
          Length = 325

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 21/270 (7%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           V  ++     +  AV        L E  +  +  LP +  G  ++Q  S+ +P      +
Sbjct: 60  VGAELSEHGIRWEAVPWYRDAFVLPESDKHEVQGLPIYENGGVYLQSLSSMLPPLALAPM 119

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               VLD+CAAPGGKT+Q+       A++ A ++   R  +L  NL +L +    ++  D
Sbjct: 120 PGADVLDMCAAPGGKTSQIAALTKGTARICACELHAPRAARLEHNLAKLKVSGVTLMRCD 179

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           A    P   FD +L+DAPC+ +GT+       L       + K +  Q  LL + ++ +K
Sbjct: 180 ARRLDPLFSFDQILLDAPCTGSGTVAAGDSRGLARITPMLLAKVSRAQAALLDRALTVLK 239

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE------ 410
            GG +++S CS+   ++E+ +++ ++      +LVPL+         +    PE      
Sbjct: 240 TGGTLIYSTCSVLPAENEDQIRRAIQRH-RDCKLVPLDDFISTGQPKSAMGIPELSVGLA 298

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G + + P    +         GF+   +++
Sbjct: 299 GTLTVCPTETYE---------GFYLAKIKK 319


>gi|265766860|ref|ZP_06094689.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_16]
 gi|263253237|gb|EEZ24713.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_16]
          Length = 472

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 19/304 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E      G E    +S A        + +       A   +           
Sbjct: 1   MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60

Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260
             L + +     P F  G ++VQ+AS+    Q         + +LDLCAAPGGK+     
Sbjct: 61  YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
               G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS
Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVLVTNNDPSDFSRIGSFFDVILTDVPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE +
Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240

Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
             +        E +PL     W      +        R  P   +          GFF  
Sbjct: 241 TWI--RQEFGAEPLPLAVPTEWNITGSLLVGVDAPVYRFLPHKTQGE--------GFFLA 290

Query: 437 ALRR 440
           ALR+
Sbjct: 291 ALRK 294


>gi|297674919|ref|XP_002815453.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like isoform
           1 [Pongo abelii]
          Length = 767

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPLKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441


>gi|320581898|gb|EFW96117.1| S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase
           [Pichia angusta DL-1]
          Length = 653

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 101/271 (37%), Gaps = 60/271 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--------VSGAKVTALDVSKR 274
              Q+A + IP        +  VLD+CAAPG KTAQLI         +   + A D   +
Sbjct: 154 ISRQEAVSMIPPLFLEVQPHHYVLDMCAAPGSKTAQLIEALHSEGAHAPGFIVANDSDYK 213

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRRHP 326
           R   L   + RL+     ++  DA  +             FD +L D PC+  GT+R++ 
Sbjct: 214 RSHMLVHQVKRLNSPNLVVVNHDAQLFPKMKLTPEGDYVKFDRILCDVPCTGDGTMRKNL 273

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            V       + +     Q  +L++G+  +K GG +V+S CSL   ++E VV   LR    
Sbjct: 274 TVWKDWRIGNALGLHSLQLNILMRGLQLLKKGGRLVYSTCSLSPIENEAVVSAALRKWGG 333

Query: 387 PVELVP------------------------------------LNSAYWKSIDMAMALSPE 410
            V++V                                      NS +  S +     + +
Sbjct: 334 KVKIVNCDNMLTGLKRRPGVSDWKVFGKDWEEKSKEDNNESLPNSVFPPSAEEVNTFNLQ 393

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +R+ P              GFF   L ++
Sbjct: 394 DCMRVYPHDQ--------NTGGFFITVLEKV 416


>gi|332228168|ref|XP_003263267.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 1
           [Nomascus leucogenys]
          Length = 767

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 102/284 (35%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L G   +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLGVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441


>gi|296194965|ref|XP_002745187.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 [Callithrix
           jacchus]
          Length = 775

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVQPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQMDVGGTKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFADWDAVPHSRHTQIRPTMFPLKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441


>gi|145546528|ref|XP_001458947.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426769|emb|CAK91550.1| unnamed protein product [Paramecium tetraurelia]
          Length = 366

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 138/408 (33%), Gaps = 59/408 (14%)

Query: 46  QILVRAIVNVTLRF----LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADY 101
           +  ++  +   +          D+ L     ++      S + ++  +   ++  DV   
Sbjct: 4   RPFIKTHIKTIMTNFDVQRGPFDSFLREYYKNN-KTLGPSERSIISQTAFDLIRNDVLLS 62

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161
                   +                +L  +   + +    +      PE   + + + YG
Sbjct: 63  HFTKDVDRKC--------------DLLSHIPDYEKDQNIPLNIRCSCPEILFQLVSDQYG 108

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE---------SI 212
           +++      A  +   + + +     T    +  +        L              ++
Sbjct: 109 QKKAYEFFTALNTKAPLTIRINPIKTTREKLMMEMQNLYFKKTLTSPYGLLVSKENNVNL 168

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS 272
                F EG++ +QD ++ I         N  VLD CA  GGKT            ++++
Sbjct: 169 SDTDQFKEGLFEIQDEASQICALRVQCKPNDKVLDYCAGSGGKTLAFAHQMEGKGVIEIN 228

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
             R E L     RL          +   +  K  +D +L+D PC+  GT+RR+PD  +  
Sbjct: 229 DTRSEALSKAKIRLRRAGIM----NYSFFTKKFKYDWILLDVPCTGLGTLRRNPDSKYRF 284

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             + +      Q+ +  Q I +++  G++V++ CS  K +++  V+   +   + V    
Sbjct: 285 SQERLNDLIKLQQDIFDQAIRYLRQDGVIVYTTCSFLKDENQNQVKHFCKKYNLSVVD-- 342

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                    +   +      GMD FF+++LR+
Sbjct: 343 -------------------------NDYFQSLPEKGGMDSFFSISLRK 365


>gi|315651231|ref|ZP_07904261.1| tRNA and rRNA cytosine-C5-methylase [Eubacterium saburreum DSM
           3986]
 gi|315486527|gb|EFU76879.1| tRNA and rRNA cytosine-C5-methylase [Eubacterium saburreum DSM
           3986]
          Length = 471

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 89/236 (37%), Gaps = 18/236 (7%)

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKV 266
            SI   P +  G++++Q+ SA  P  +        VLDLCAAPGGK+ Q+         +
Sbjct: 89  NSISKNPYYFAGLYYIQEPSAMTPASIAKIKPGDKVLDLCAAPGGKSTQIASYLQGEGLL 148

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRR 324
              D S  R++ L+ N++   +    I   D           FD ++VDAPCS  G  RR
Sbjct: 149 VTNDFSASRVKALQKNVEVSGIDNVLITNEDPKHLSEVYSEYFDKIIVDAPCSGEGMFRR 208

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
              V               Q  +L +    +K GG +V+S C+    + E  +   L + 
Sbjct: 209 DSAVFKAYLGRGPESFTGIQVGILNEAAKMLKSGGTLVYSTCTYSSIEDEGSLISFLENH 268

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                +    G +R+ P  L+          G F   L++
Sbjct: 269 NDF-----DIDRITPEFGFEESKQLPGTVRLFPHKLKGE--------GHFVARLKK 311


>gi|224045840|ref|XP_002190161.1| PREDICTED: NOL1/NOP2/Sun domain family 2 protein [Taeniopygia
           guttata]
          Length = 753

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 122/359 (33%), Gaps = 64/359 (17%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
                   L+  Y +E      D     +   L    +   W   L+  +L       K 
Sbjct: 42  HAREILHCLKEKYFRELQDLEVDGQKVEMPQSLGWYPEELAWHTNLSRKILRKSPQLEKF 101

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--- 264
               +        G    Q+A + IP  L     +  VLD+CAAPG KTAQLI       
Sbjct: 102 HQFLVSETE---CGNISRQEAVSMIPPLLLNVSPHHKVLDMCAAPGSKTAQLIEMLHADM 158

Query: 265 -------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307
                   V A DV  +R   L     RL+     ++  DA                  +
Sbjct: 159 NVPFPSGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQIDVDGRKEILFY 218

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG +V+S CS
Sbjct: 219 DRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCS 278

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-------------- 413
           L+  ++E V+  +L  S   +EL  ++S       M      +  +              
Sbjct: 279 LNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPS 338

Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
               +I P M                  +I        GFF   L +         QPK
Sbjct: 339 NRQTQIRPTMFPVKDEEKLKAMNLERCLRILPHHQNTGGFFVAVLIKKSPMPWNKRQPK 397


>gi|62914023|gb|AAH01041.3| NSUN2 protein [Homo sapiens]
          Length = 679

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 70  ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 129

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 130 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 189

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 190 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 249

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 250 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 309

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 310 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 353


>gi|152149576|pdb|2B9E|A Chain A, Human Nsun5 Protein
          Length = 309

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 23/272 (8%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D+     K   +      + +      +   P +  G   +QD ++ +P  L        
Sbjct: 46  DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 105

Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L R  +   ++ E D    
Sbjct: 106 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 165

Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF- 354
            P          +L+D  CS +G   R        T     +   A FQ++ L   ++F 
Sbjct: 166 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 225

Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++    +V+S CSL ++++E+VV+  L+ +P    L P   A W    ++     E  +
Sbjct: 226 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 281

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           R +P+             GFF   + R+  P+
Sbjct: 282 RASPETTLSS--------GFFVAVIERVEVPR 305


>gi|114598922|ref|XP_517620.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 2
           [Pan troglodytes]
          Length = 767

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441


>gi|153808887|ref|ZP_01961555.1| hypothetical protein BACCAC_03188 [Bacteroides caccae ATCC 43185]
 gi|149128713|gb|EDM19931.1| hypothetical protein BACCAC_03188 [Bacteroides caccae ATCC 43185]
          Length = 486

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 118/306 (38%), Gaps = 18/306 (5%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPT 200
               +P  F E      G E    +  A      + + +           + L+     +
Sbjct: 1   MKMNLPASFTEYTRALLGVEEYEKLVSALQQEPPVSIRLNRLKVHRLKVENALSVQPPWS 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQ 258
                 +   +    P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+  
Sbjct: 61  SEGIYLDERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQHVTKPVVMLDLCAAPGGKSTH 120

Query: 259 LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314
                  G+ + A +V + R + L  NL +       +   D  D+      FD +L D 
Sbjct: 121 ARSVLPEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALPSFFDVILTDV 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ E
Sbjct: 181 PCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADVWPSLKPGGILIYSTCTYNTKEDE 240

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           E V+ + +        V +   +  + ++    S   +    P   +          GFF
Sbjct: 241 ENVRWIQQEFGAESLAVDIREEWNITGNLLCGESASVY-HFFPHKTKGE--------GFF 291

Query: 435 AVALRR 440
              LR+
Sbjct: 292 LSVLRK 297


>gi|39995082|ref|NP_060225.4| tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 1 [Homo sapiens]
 gi|148887180|sp|Q08J23|NSUN2_HUMAN RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName:
           Full=NOL1/NOP2/Sun domain family member 2; AltName:
           Full=Substrate of AIM1/Aurora kinase B; AltName:
           Full=tRNA (cytosine-5-)-methyltransferase; AltName:
           Full=tRNA methyltransferase 4 homolog; Short=hTrm4
 gi|187950511|gb|AAI37084.1| NOL1/NOP2/Sun domain family, member 2 [Homo sapiens]
          Length = 767

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441


>gi|313202615|ref|YP_004041272.1| fmu (sun) domain protein [Paludibacter propionicigenes WB4]
 gi|312441931|gb|ADQ78287.1| Fmu (Sun) domain protein [Paludibacter propionicigenes WB4]
          Length = 443

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 24/304 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +PE F +R     G +   A+  A        + V  +   +A   N V     G  L
Sbjct: 1   MTLPEAFIKRTTELLG-DNFGALEKALGETPPTSIRVN-NKMDYAPSKNQVPWCETGYYL 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASI--PVQLFGTLNNLSVLDLCAAPGGK---TAQLI 260
            E P    + P F  GV++VQ+AS+       +       +VLDLCAAPGGK    +Q +
Sbjct: 59  DERPLF-TADPLFHAGVYYVQEASSMFLQQAVMQHFKEARTVLDLCAAPGGKSTLLSQAL 117

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319
              + + + ++ + R   L  NL +       +   +  D+      FDAV+VDAPCS  
Sbjct: 118 SENSLLVSNEIIRSRAYILAENLIKWGNPNVVVTNNEPKDFSNLPGFFDAVVVDAPCSGE 177

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+    +      ++   A  QR++L      +K  GI+V+S C+ +++++E  V  
Sbjct: 178 GMFRKDAGAIDEWSEYNVSLCATRQREILSSVWDSLKEDGILVYSTCTFNREENENNVCW 237

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +       +  + L +        +  +S +   R  P   +          GFF   +R
Sbjct: 238 ICEELGADLLKIDLQAN-------SDIISSDYGYRFYPHKTKGE--------GFFISVVR 282

Query: 440 RLIQ 443
           +  Q
Sbjct: 283 KTSQ 286


>gi|146318761|ref|YP_001198473.1| rRNA methyltransferase, [Streptococcus suis 05ZYH33]
 gi|145689567|gb|ABP90073.1| rRNA methyltransferase, putative [Streptococcus suis 05ZYH33]
          Length = 341

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 26/214 (12%)

Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MD 297
           + VLDL AAPGGK+      + +   + + ++S +R   L  N++R       +     D
Sbjct: 1   MKVLDLAAAPGGKSTHLLSYLENTGLLVSNEISNKRARILAENIERFGARNVVVTNESAD 60

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
             +      FD +++DAPCS  G  R++PD +         + A  QR++L   ++ + P
Sbjct: 61  RLEKVFPGYFDMIVLDAPCSGEGMFRKYPDAIQYWSKHYPAQCASLQREILESALNMLAP 120

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            G +++S C+   +++EEVV  +L    + +  +P  +   + I            R+ P
Sbjct: 121 DGQLIYSTCTWSPEENEEVVTWLLEQYDLELIDIPKINGMVEGIGYTEVA------RMYP 174

Query: 418 DMLEKIDGVSSGMDGFFAVALR-------RLIQP 444
                           F    R       + ++P
Sbjct: 175 HHFAGEGQ--------FVAKFRFLGEASQKKLKP 200


>gi|219114260|ref|XP_002176301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402704|gb|EEC42693.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 413

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 144/328 (43%), Gaps = 32/328 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           NAR +++  L   + K  S    +D    +  +  LS RD+   R +V  T R L +ID 
Sbjct: 76  NARFLAARAL---ITKTGSAAFAVDRLESNKHYSTLSTRDRSFARLLVTTTERRLGQIDE 132

Query: 66  VLDFV---LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN---RH 119
           VL        S   R    +Q  LR+   Q+L+L V ++A V   VE  + D +      
Sbjct: 133 VLRQCQKETKSRPNRVDQFVQAALRIGATQLLFLKVPEHAAVKETVELLRHDPKTTVPES 192

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             K VN++LRR+SRE   LL           W  +  +  +G+E    I    +      
Sbjct: 193 RIKFVNAVLRRISREGDVLLATTDVTQNASPWLVKEWQKSWGEEATRKIVALAMEETPRV 252

Query: 180 LTVKFDIETWAHKLNA-------------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
           LT+K    +   K                ++           P SI++ P ++EG WW+Q
Sbjct: 253 LTIKQHPGSQLEKPMGRIKAVAALFEDSEILPQGSVRVNTSPPGSIINWPEYSEGSWWLQ 312

Query: 227 DASASIPVQLFGTLNNL---------SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRL 276
           DA+A+ P        +           V+D+CA+PGGKTAQL   G   VTA++V+++R 
Sbjct: 313 DAAATTPAIALYNALSKNGETSVAGLDVVDMCASPGGKTAQLWNYGFASVTAVEVAEKRT 372

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           E+LR N+ RL++  E ++   A      
Sbjct: 373 ERLRQNMQRLNMDCEVVVADGAQWTSQH 400


>gi|115501316|dbj|BAF34150.1| putative 5-methycytoisine methyltransferase [Homo sapiens]
          Length = 767

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441


>gi|215430293|ref|ZP_03428212.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
 gi|289753488|ref|ZP_06512866.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
 gi|289694075|gb|EFD61504.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
          Length = 254

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 75/243 (30%), Gaps = 22/243 (9%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L  V  +      +L       A R +  RD      +   T R    +DA
Sbjct: 15  PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 71

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+      S       L  LLR+   Q+L   V  +A V   VEQA   + +   A  VN
Sbjct: 72  VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130

Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170
            +LR ++                       A +   P W  +   +  G     + A+  
Sbjct: 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190

Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           +      + L  +  + T       +   +       +         L    +G   VQD
Sbjct: 191 SNDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250

Query: 228 ASA 230
            +A
Sbjct: 251 EAA 253


>gi|89074302|ref|ZP_01160792.1| putative sun/nucleolar protein family protein [Photobacterium sp.
           SKA34]
 gi|89050006|gb|EAR55540.1| putative sun/nucleolar protein family protein [Photobacterium sp.
           SKA34]
          Length = 476

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 122/266 (45%), Gaps = 21/266 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                 L  V     G  ++   E    + +      G++++Q+AS+ +PV      NN 
Sbjct: 57  ANRGWTLTPVPWCDTGFWIEREDEDTVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNNA 116

Query: 244 SVL--DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
                D+ +APG KT Q+   + +   + A +++  R++ L  NL R  ++   +   D 
Sbjct: 117 LDCVLDMASAPGSKTTQIASAMQNRGALVANELAASRIKVLHSNLQRCGVHNAALTHFDG 176

Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +     + FD++L+DAPCS  G IR+  D +       I + A  QR L++     +K
Sbjct: 177 CVFGTWAPESFDSILLDAPCSGEGAIRKDEDAMANWSLASIDEIAEVQRNLIISAFQALK 236

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
             G++V+S C+L++ ++++V   +       VE  PLN+ +        +L+ +G++ + 
Sbjct: 237 TSGVMVYSTCTLNQSENQDVCHFLKEKFGDAVEFEPLNTLF---DGADKSLTEDGFLHVY 293

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442
           P + +          GFF   +R+L 
Sbjct: 294 PQVFDSE--------GFFVARIRKLA 311


>gi|114047240|ref|YP_737790.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. MR-7]
 gi|113888682|gb|ABI42733.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. MR-7]
          Length = 510

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 23/261 (8%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254
               G     +  E + +     +G++++Q+AS+ +P         +   VLDL +APG 
Sbjct: 93  WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 152

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309
           KT Q+   + +   + A + S  R++ L  N+ R+      +   D   +     + FDA
Sbjct: 153 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 212

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPC   GT+R+  D L +   D++++ +  Q+ L+      +KPGG +V+S C+L+
Sbjct: 213 VLIDAPCGGEGTVRKDADALKSWSLDEVLEISETQKALIESAFLALKPGGSLVYSTCTLN 272

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++ V + + ++    V+   L+  +        A +PEG++ + P + +        
Sbjct: 273 RHENQGVCEYLQQTYGDAVQFESLSQLF---DGAEKATTPEGFLHVWPQIYDSE------ 323

Query: 430 MDGFFAVALRR-----LIQPK 445
             GFF   L +      +QP+
Sbjct: 324 --GFFVAKLTKTRSVPRLQPE 342


>gi|157822221|ref|NP_001101873.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Rattus norvegicus]
 gi|149032756|gb|EDL87611.1| NOL1/NOP2/Sun domain family, member 2 (predicted) [Rattus
           norvegicus]
          Length = 782

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 183 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 242

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 243 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 302

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 303 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 362

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 363 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWQEVPQGRHTQIRPTMFPPKD 422

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 423 LDKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 466


>gi|329957792|ref|ZP_08298267.1| NOL1/NOP2/sun family protein [Bacteroides clarus YIT 12056]
 gi|328522669|gb|EGF49778.1| NOL1/NOP2/sun family protein [Bacteroides clarus YIT 12056]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 119/302 (39%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F +      G E    +  A  S   + + +            + +        
Sbjct: 1   MELPASFIDYTRALLGDEEYTELVTALESEQPVSIRLNPLKPFGFQSGESAVPWCTSGFY 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL---NNLSVLDLCAAPGGKTAQLI-- 260
            +   +    P F  G ++VQ+AS+    Q            +LDLCAAPGGK+  +   
Sbjct: 61  LKERLTFTFDPLFHAGCYYVQEASSMFVEQALRQYAGEEPAVMLDLCAAPGGKSTHVRGI 120

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318
               + + A +V + R + L  NL +       +   D  D+ P ++ FD +L D PCS 
Sbjct: 121 LPENSLLVANEVIRNRSQILAENLTKWGHPDVVVTNSDPSDFTPLEEFFDVILTDVPCSG 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +    ++++      QR+++      +KPGG++++S C+ + +++EE V+
Sbjct: 181 EGMFRKDPVAVSEWSSENVEICRQRQRRIISDIWPCLKPGGLLIYSTCTYNTKENEENVR 240

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +       V  + +   +  + ++          R  P   +          GFF   L
Sbjct: 241 WIKDEFGAEVLPLDVAEDWNITGNLLQGE-RFPVYRFLPHKTKGE--------GFFLAVL 291

Query: 439 RR 440
           R+
Sbjct: 292 RK 293


>gi|296131695|ref|YP_003638942.1| Fmu (Sun) domain protein [Thermincola sp. JR]
 gi|296030273|gb|ADG81041.1| Fmu (Sun) domain protein [Thermincola potens JR]
          Length = 464

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 117/305 (38%), Gaps = 39/305 (12%)

Query: 146 SIIPEWFKERLENFYGKERVLAISD------ACISPLYIDLTVKFDIETWAHKLNAVMLP 199
             +P  F  ++E   G      +        A +    + ++ +   E        V   
Sbjct: 1   MRLPPAFLTKMEQQLGSNFARFLQSYTEPRTAGLRANTLKISPEALQELLPFLQERVSWC 60

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
             G    E       LP +  G++++Q+ SA +P +L        VLDLCAAPGGK+ QL
Sbjct: 61  RDGFYYNEEEVRPAKLPHYYAGLYYIQEPSAMLPAELLQVQPGERVLDLCAAPGGKSLQL 120

Query: 260 IVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDA 314
                    +   D   +R + L  N++R  +    +         +     FD +LVDA
Sbjct: 121 AAHLGKAGLLVVNDPHPQRAKVLLKNIERYGVINAVVLSETPQRLAHIFADFFDKILVDA 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+ P++       ++ K A +Q  +L      ++PGG VV+S C+  ++++E
Sbjct: 181 PCSGEGMFRKEPEMAKDWSEAEVAKYAKWQAAILEHIPQMLRPGGEVVYSTCTFSREENE 240

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           + V + L + P    L                       R+ P  +           G F
Sbjct: 241 QQVLRFLGAFPDFELLE--------------------MRRLWPHEVRGE--------GHF 272

Query: 435 AVALR 439
           A  ++
Sbjct: 273 AAKIK 277


>gi|325001359|ref|ZP_08122471.1| ribosomal RNA small subunit methyltransferase [Pseudonocardia sp.
           P1]
          Length = 280

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 86/276 (31%), Gaps = 29/276 (10%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  LL+ V  +       L         R        L   +   TLR    +D 
Sbjct: 4   PARQAAYDLLTAVREREAYANLALPGILRRYRLRDRDA---ALATELGYGTLRAQGLLDT 60

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           V+D      L + ++ L   LR+   Q+L   V  +A V   VE  + D  ++  A  VN
Sbjct: 61  VIDACTDRPLSKIEHPLLDALRLGAYQLLRTRVPAHAAVSTCVELVRGDHGSQS-AGFVN 119

Query: 126 SILRRVSREKIELLQRI-------------AGISIIPEWFKERLENFYGKERVLAISDAC 172
           ++LRR+                        A     P W  +   +  G       +   
Sbjct: 120 AVLRRIGEHDEAEWLDRLAPDPAEDPVGNAALRHAHPRWIAQAFADSLGDTGEELTAALA 179

Query: 173 ISPLYIDLTVKFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
                  + +       + +                G+ L+     I  L   AEG+  V
Sbjct: 180 ADDARPRVHLLARPGEISAEELALATGGEEAPWSPYGVHLEPGSGDIGELDAVAEGLALV 239

Query: 226 QDASASIPVQLFGT-----LNNLSVLDLCAAPGGKT 256
           QD  + +             +    LDLCA PGGK 
Sbjct: 240 QDEGSQLVAAALARAELLGEDTGRWLDLCAGPGGKA 275


>gi|26326103|dbj|BAC26795.1| unnamed protein product [Mus musculus]
          Length = 691

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 92  ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 151

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 152 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 211

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 212 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 271

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 272 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 331

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 332 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 375


>gi|74140144|dbj|BAE33793.1| unnamed protein product [Mus musculus]
          Length = 465

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 149/405 (36%), Gaps = 29/405 (7%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A++  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALMCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + ++   R      +P + +        ++ + 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFVRVNTLKTRPEDAID 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D+     +   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ +     +  K+ A D   +RL  +   +
Sbjct: 212 DKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLV 271

Query: 284 DRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G + R        T   + +
Sbjct: 272 ARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              A FQ++ L   + F  ++    +V+S CSL ++++E+VVQ+ L+ +     L P+  
Sbjct: 332 QALAGFQQRALCHALRFPSLQ---RLVYSTCSLCQEENEDVVQEALQHNSGTFRLAPVLP 388

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             W    +      E  +R +P+             GFF     R
Sbjct: 389 T-WPHRGLNTFPGSEHCLRASPETTL--------TGGFFIAVFER 424


>gi|156848874|ref|XP_001647318.1| hypothetical protein Kpol_1002p109 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118003|gb|EDO19460.1| hypothetical protein Kpol_1002p109 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 670

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 102/265 (38%), Gaps = 46/265 (17%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKR 274
              Q+A + IP  +     + +VLD+CAAPG KTAQLI +             A D   +
Sbjct: 147 ISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHMEDDEPSGFVVANDADAK 206

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTI 322
           R   L   L RL+     ++  DA  +                 FD VL D PCS  GT+
Sbjct: 207 RSHMLVHQLKRLNSANLMVVNHDAQFFPRIKLHEDATQKKDVLRFDRVLCDVPCSGDGTM 266

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ +V    +T   +     Q  +L +G+  +KP G +V+S CS++  ++E VV   LR
Sbjct: 267 RKNVNVWRDWNTQSGLGLHTVQLNILNRGLHLLKPKGRLVYSTCSMNPIENEAVVAAALR 326

Query: 383 SSPIPVELVPLNSAYWK--------------------------SIDMAMALSPEGWIRIT 416
                + LV  +                               +++   A +PE   +  
Sbjct: 327 KWGDKIRLVNCDDKLPGLVRSKGISTWPVVDRNMEEKKKGDENTVESWFAPTPEEAEKFD 386

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
                ++        GFF     +L
Sbjct: 387 LSSCIRVYPHQQNTGGFFITVFEKL 411


>gi|317475459|ref|ZP_07934723.1| NOL1/NOP2/sun family protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908487|gb|EFV30177.1| NOL1/NOP2/sun family protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 492

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 124/305 (40%), Gaps = 22/305 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F +   N  G E  + ++ A  +   + + +              +        
Sbjct: 1   MELPVLFTDYTRNLLGDEDYMRLTAALEAEQPVSIRLNPLKPFAFQLGEDEVPWCASGFY 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI-- 260
            +   +    P F  G ++VQ+AS+    Q+           +LDLCAAPGGK+  +   
Sbjct: 61  LKERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQHWGEEPAVMLDLCAAPGGKSTHVRSI 120

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318
               + + A +V + R + L  NL +       +   D  D+   K LFD +L D PCS 
Sbjct: 121 LPENSLLIANEVIRNRSQILAENLAKWGHTGVVVTNNDPSDFTSLKDLFDIILTDVPCSG 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + +++EE ++
Sbjct: 181 EGMFRKDPVAVSEWSLENVEVCWRRQRRIISDIWPCLKPGGILIYSTCTYNTKENEENIR 240

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE---KIDGVSSGMDGFFA 435
            +        E++PL+ A          ++      + P       +     +  +GFF 
Sbjct: 241 WI--RDEFGAEVLPLDVAE------DWNITGN----LLPGEHFPVYRFLPYKTKGEGFFM 288

Query: 436 VALRR 440
             LR+
Sbjct: 289 AVLRK 293


>gi|291519092|emb|CBK74313.1| tRNA and rRNA cytosine-C5-methylases [Butyrivibrio fibrisolvens
           16/4]
          Length = 439

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 33/259 (12%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           +  A  L   +  +      +        P  A GV+++QDASA +PV++   +     L
Sbjct: 50  DKMASVLTGKVDWSKNGYYYDEESRPGLHPYHAAGVYYIQDASAQLPVEMLAPVPGDYCL 109

Query: 247 DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDY 301
           DLCAAPGGK+ Q+         + + +  K R + L  N++RL +    +     D    
Sbjct: 110 DLCAAPGGKSTQIAGYLKGEGILVSNEPIKNRAKILSENVERLGIKNCIVTSEYPDKLSE 169

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FD ++VDAPCS  G  R++ D       + +   A  Q ++L +    + PGG +
Sbjct: 170 VFTEYFDRIMVDAPCSGEGMFRKNHDACTEWSLESVEMCAARQAEILDRAYEMLIPGGRM 229

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
            +S C+  K + EEVV   +   P    +                       R+ P  ++
Sbjct: 230 CYSTCTFAKLEDEEVVASFISRHPDMSLIEE--------------------RRLWPHEVK 269

Query: 422 KIDGVSSGMDGFFAVALRR 440
                     G +A  L +
Sbjct: 270 GE--------GHYAALLEK 280


>gi|146325702|sp|Q0HVX2|RSMF_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 482

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 23/261 (8%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254
               G     +  E + +     +G++++Q+AS+ +P         +   VLDL +APG 
Sbjct: 65  WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 124

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309
           KT Q+   + +   + A + S  R++ L  N+ R+      +   D   +     + FDA
Sbjct: 125 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 184

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPC   GT+R+  D L +   D++++ +  Q+ L+      +KPGG +V+S C+L+
Sbjct: 185 VLIDAPCGGEGTVRKDADALKSWSLDEVLEISETQKALIESAFLALKPGGSLVYSTCTLN 244

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++ V + + ++    V+   L+  +        A +PEG++ + P + +        
Sbjct: 245 RHENQGVCEYLQQTYGDAVQFESLSQLF---DGAEKATTPEGFLHVWPQIYDSE------ 295

Query: 430 MDGFFAVALRR-----LIQPK 445
             GFF   L +      +QP+
Sbjct: 296 --GFFVAKLTKTRSVPRLQPE 314


>gi|148705069|gb|EDL37016.1| NOL1/NOP2/Sun domain family 2, isoform CRA_b [Mus musculus]
          Length = 691

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 92  ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 151

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 152 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 211

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 212 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 271

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 272 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 331

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 332 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 375


>gi|317486223|ref|ZP_07945057.1| NOL1/NOP2/sun family protein [Bilophila wadsworthia 3_1_6]
 gi|316922522|gb|EFV43774.1| NOL1/NOP2/sun family protein [Bilophila wadsworthia 3_1_6]
          Length = 425

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS 272
            SL  F  G  ++QD S+ +P           VLD+CA+PG KT  L     +   +  +
Sbjct: 55  RSLAAFW-GYVYIQDRSSMLPPLALAPGEGARVLDMCASPGSKTGLLAQLVGREGLVLGN 113

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLFDAVLVDAPCSSTGTIRRHP 326
           +    +L     R +L A ++++     +       P   +DAVL+D PCS  GT  ++P
Sbjct: 114 EPARPRLANL--RRNLAALNLLQAVTCSWPGESLPLPDASWDAVLLDPPCSGWGTTDKNP 171

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             +     D +      QRKLL +    ++PGG +V+S C+ +  ++E  V+  +    +
Sbjct: 172 QAIKRWQGDRLKPMLDLQRKLLTEASRLLRPGGKLVYSTCTTNVDENEGQVRFAVE--GL 229

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +E +PL                EG +R+        D  +S   GF+   LR+
Sbjct: 230 GLEPIPLEPFPGFVFAAPELPGCEGTLRV--------DEGASNAQGFYIALLRK 275


>gi|114598926|ref|XP_001143653.1| PREDICTED: NOL1/NOP2/Sun domain family 2 protein [Pan troglodytes]
          Length = 666

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441


>gi|117920217|ref|YP_869409.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. ANA-3]
 gi|117612549|gb|ABK48003.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. ANA-3]
          Length = 510

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 23/261 (8%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254
               G     +  E + +     +G++++Q+AS+ +P         +   VLDL +APG 
Sbjct: 93  WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 152

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309
           KT Q+   + +   + A + S  R++ L  N+ R+      +   D   +     + FDA
Sbjct: 153 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 212

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPC   GT+R+  D L +   D++++ +  Q+ L+      +KPGG +V+S C+L+
Sbjct: 213 VLIDAPCGGEGTVRKDADALKSWSLDEVIEISETQKALIESAFLALKPGGSLVYSTCTLN 272

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++ V + + ++    V+   L+  +        A +PEG++ + P + +        
Sbjct: 273 RHENQGVCEYLQQTYGDAVQFESLSQLF---DGAEKATTPEGFLHVWPQIYDSE------ 323

Query: 430 MDGFFAVALRR-----LIQPK 445
             GFF   L +      +QP+
Sbjct: 324 --GFFVAKLTKTRSVPRLQPE 342


>gi|325968037|ref|YP_004244229.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707240|gb|ADY00727.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 404

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 25/246 (10%)

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV 266
                +  L  +  G+++ Q   A     +        ++D+ AAPGGKT+ ++  G   
Sbjct: 172 YNMPKVRDLREYELGLFYDQSLPAQWVTHILDPRPGDVIVDMNAAPGGKTSHIVQLGGGK 231

Query: 267 ---TALDVSKRRLEKLRCNLDRLHLYAEDIIE------MDAFDYCPKKLFDAVLVDAPCS 317
               A D S+ ++ ++  NL RL + +   +E      +D  +       D +L+D PC+
Sbjct: 232 AVVYAFDRSENKIREIIENLSRLGMDSLYRVEVRDTRFLDIDEPDLINSVDKILIDPPCT 291

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G     P +   +  + +  +A +Q + +      +KPGG++V+S C++   ++E+ +
Sbjct: 292 DMGV---RPRLFDMKTMETVKSTAKYQEQFIKVAWKLLKPGGVLVYSTCTIPPLENEDNI 348

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
                   +  E++ ++        +    +    IR  P +            G+F   
Sbjct: 349 AYA---ENLGFEVIDISIPNTSGGLVDRYRNS--VIRFYPHV--------HDTPGYFIAK 395

Query: 438 LRRLIQ 443
           LR+  Q
Sbjct: 396 LRKPTQ 401


>gi|254367790|ref|ZP_04983811.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           tularensis subsp. holarctica 257]
 gi|134253601|gb|EBA52695.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           tularensis subsp. holarctica 257]
          Length = 267

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 125/279 (44%), Gaps = 27/279 (9%)

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWV 225
              + ++I L    D +      +   +      LK+  +      +     F +G + +
Sbjct: 3   NAKADIFIRLNQNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNHLFQQGYFTI 62

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNL 283
           QD SA     +    NN  +LD CAAPGGKT+        A +TA+D+  +RLE LR NL
Sbjct: 63  QDISAQYADHIIKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENL 122

Query: 284 DR-LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           +R    +  ++ + D         F+ +++DAPCS+ GTIRR+PD+   R  +DI     
Sbjct: 123 ERLSENHNVNVFKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKS 181

Query: 343 FQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
            Q K+L    +  +   G ++++ CS+  +++++ +++ L  +         N+A    I
Sbjct: 182 LQSKILANLWNNNLTDNGYLLYTTCSILAEENQQQIKEFLAKN---------NNAKIIEI 232

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           D+          ++ P   +         DGF+   L++
Sbjct: 233 DILEKYKTSYGYQLLPSQQDG--------DGFYYCLLKK 263


>gi|322490359|emb|CBZ25619.1| putative methyltransferase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 849

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 100/270 (37%), Gaps = 54/270 (20%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTAL 269
                Q+  ++IPV +       +V+DLCAAPG KT               V    + A 
Sbjct: 284 SAVSFQEVVSAIPVFVLDVQPQHTVVDLCAAPGSKTVQALDTMLSGGWSADVCRGVLIAN 343

Query: 270 DVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVLVDA 314
           +  + +  + L   L R H         D   +                ++ FD ++ D 
Sbjct: 344 EKDRVKATQTLPARLKRYHAPNVMTTRCDGVQWPRLYLDDPTNPSSEPQERQFDRIICDV 403

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  GTIR+   +  T     +      QR LL +G+  +  GGI+V+S CS++ ++ E
Sbjct: 404 PCSGDGTIRKERSIATTWSPSYVKSLVPTQRALLYRGLDLLATGGILVYSTCSMNPKEDE 463

Query: 375 EVVQKVLRSSPIPVELVPLNS--------------------AYWKSIDMAMALSPEGWIR 414
           EVV   L +    VEL+ +N+                       +   +         +R
Sbjct: 464 EVVCVGLETFGDSVELIDVNAVLQQRGCHLHSAGGILSPNVEGLQHPVLPPTYDGNKVLR 523

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           I P              GFF  A R++ QP
Sbjct: 524 ILPH--------RDDTGGFFVAAFRKVKQP 545


>gi|119590102|gb|EAW69696.1| hCG39703, isoform CRA_e [Homo sapiens]
          Length = 428

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 109/271 (40%), Gaps = 23/271 (8%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D+     K   +      + +      +   P +  G   +QD ++ +P  L        
Sbjct: 132 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 191

Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L R  +   ++ E D    
Sbjct: 192 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 251

Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF- 354
            P          +L+D  CS +G   R        T     +   A FQ++ L   ++F 
Sbjct: 252 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 311

Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++    +V+S CSL ++++E+VV+  L+ +P    L P   A W    ++     E  +
Sbjct: 312 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 367

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           R +P+             GFF   + R+  P
Sbjct: 368 RASPETTLSS--------GFFVAVIERVEVP 390


>gi|50552462|ref|XP_503641.1| YALI0E06765p [Yarrowia lipolytica]
 gi|49649510|emb|CAG79223.1| YALI0E06765p [Yarrowia lipolytica]
          Length = 752

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 139/400 (34%), Gaps = 70/400 (17%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              VV    +  K  K      +      +   +  + +  R+ G + + +  +  + + 
Sbjct: 26  WEDVVKENEKWEKYYKAQGIVPEAEWDAFKTACQSPLPVSFRVTGSTELTDEIQAAIVDD 85

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           Y       + +        ++    +   W   +   ++    +  +     ++      
Sbjct: 86  YVPHLSGLVFEGEEVVPPQNIKFYPNNHGWQFNVRKTVVRKQKLFSRFHRFLVLETTA-- 143

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---------KVTALD 270
            G    Q+A + IP  L     + +VLD+CAAPG KTAQLI +            V A D
Sbjct: 144 -GNISRQEAVSMIPPILLDVQPSDAVLDMCAAPGSKTAQLIEAVHAGGDLNPSGFVIAND 202

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAP 315
              +R   L   + RL+     +   DA  Y                    FD +L D P
Sbjct: 203 SDYKRSHMLIHQVQRLNSPNLIVTNHDAQMYPKVAIAAKGVDGAKSNEYLKFDRILCDVP 262

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS   T+R++ +V       + +     Q  +L++GI  +KPGG +V+S CSL+  ++E 
Sbjct: 263 CSGDATMRKNVNVWPDWTPGNALGLHQLQLNILMRGIQLLKPGGRLVYSTCSLNPIENEA 322

Query: 376 VVQKVLRSSPIPVELVP-----------------------------------LNSAYWKS 400
           VV + LR S   V L+                                       +++  
Sbjct: 323 VVAEALRLSKGSVHLIESRGDIPNLINSKGMTDWKVQAKGNKDGWNNKGDEGCTDSWFPP 382

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            D ++       IR+ P         +    GFF VA  +
Sbjct: 383 TDESIKEQLTKCIRVYPH--------TQDTGGFFIVAFEK 414


>gi|295054316|ref|NP_663329.3| tRNA (cytosine-5-)-methyltransferase NSUN2 [Mus musculus]
 gi|148887181|sp|Q1HFZ0|NSUN2_MOUSE RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName:
           Full=Myc-induced SUN domain-containing protein; AltName:
           Full=NOL1/NOP2/Sun domain family member 2
          Length = 757

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 441


>gi|213648131|ref|ZP_03378184.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 316

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 13/159 (8%)

Query: 285 RLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           R  +    +   D   +       FDA+L+DAPCS  G +R+ PD L     +  +  A 
Sbjct: 1   RCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAA 60

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QR+LL      ++PGG +V+S C+L++Q++E V   +  +    VE +PL   +    D
Sbjct: 61  TQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---D 117

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              AL+PEG++ + P + +          GFF   LR++
Sbjct: 118 ADRALTPEGFLHVFPQIYDCE--------GFFVARLRKM 148


>gi|126314516|ref|XP_001379130.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5
           [Monodelphis domestica]
          Length = 456

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 90/444 (20%), Positives = 163/444 (36%), Gaps = 33/444 (7%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            ++ +LS +   + SL  L+      S F+ +       + A+V  T R+   +DAV+  
Sbjct: 6   AAATVLSGLEAHQGSLKTLV----YGSRFQNV-----RQLYALVCETQRYSAVLDAVIRS 56

Query: 70  V-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             L+ +  + K  L ++L   V ++L             V    + +    FA+L     
Sbjct: 57  AKLLEAEKKLKPHLAKVL---VYELLLGRGLRGGGRWKPVLSRHKARLQAEFARLKVKRC 113

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
              + + +E     A +  +P + +         + +        S       +      
Sbjct: 114 VSRNEDLLESSPGTAQVIQLPRFVRVNTLKTCLDDTIDYFKREGYSYQGCASGLDELRAL 173

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
              +     L    + +      +   P +  G   +QD ++ +P  L        V+D 
Sbjct: 174 EGKRFFLDPLLPELL-VFPSGTDLHKHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDA 232

Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           CAAPG KT+ L     +  K+ A D+   RL  +   L R  +   +I   D     P  
Sbjct: 233 CAAPGNKTSHLAALLKNQGKIFAFDLDAGRLAAMATLLTRAGVSCCEIANEDFLSISPSN 292

Query: 306 L----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA--CFQRKLLLQGISFVKPGG 359
                   +L+D  CS +G + R  +             A   FQR+ L   +SF     
Sbjct: 293 PRYSRVQYILLDPSCSGSGMVSRQLEEPGAVSPSQERLHALAGFQRRALRHALSFPALQ- 351

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+S CS+ ++++E+VVQ +L+    P  LV      W    ++     E  IR +P+ 
Sbjct: 352 RLVYSTCSVCQEENEDVVQDILQQKLGPFRLVDALP-LWPQRGLSTFPGAEHCIRASPEA 410

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443
                       GFF   L R+ +
Sbjct: 411 TL--------TGGFFVAVLERVDE 426


>gi|54309113|ref|YP_130133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Photobacterium
           profundum SS9]
 gi|46913545|emb|CAG20331.1| putative sun/nucleolar protein family protein [Photobacterium
           profundum SS9]
          Length = 484

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 21/245 (8%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL--DLCAAPGGKTA---QLIVSGAK 265
           S+ +      G++++Q+AS+ +PV      N+      D+ +APG KT      + +   
Sbjct: 92  SLGNTAEHMAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGV 151

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIR 323
           + A +++  R++ L  NL R  +Y   +   D   +     + FD +L+DAPCS  G IR
Sbjct: 152 LVANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTILLDAPCSGEGAIR 211

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           +  D +       I   A  QR L++     +K GG++V+S C+L+  +++ V   +  +
Sbjct: 212 KDGDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGMMVYSTCTLNLSENQHVCHFLKET 271

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR--- 440
               VE  PL   +        +L+ +G++ + P + +          GFF   +R+   
Sbjct: 272 FGDAVEFEPLGDLFE---GAEKSLTEDGFLHVYPQIFDSE--------GFFVARIRKHAA 320

Query: 441 LIQPK 445
           +  PK
Sbjct: 321 VETPK 325


>gi|326798006|ref|YP_004315825.1| Fmu (Sun) domain protein [Sphingobacterium sp. 21]
 gi|326548770|gb|ADZ77155.1| Fmu (Sun) domain protein [Sphingobacterium sp. 21]
          Length = 451

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 21/308 (6%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             + +P      L+  +  +                + +      W              
Sbjct: 1   MSNFLPSKLITALKKDFQIDEEEFRRVHRQQEQITSIRLNPT--KWTKAFENTDHIPWCP 58

Query: 204 RLKELPESIVSL--PGFAEGVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKTA 257
               L E  +    P F  G ++VQ+AS+     +             LDLCAAPGGK+ 
Sbjct: 59  TGYYLNERPIFTLDPLFHAGTYYVQEASSMFIDHIIRSLNIDKKASLALDLCAAPGGKST 118

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVD 313
            L       + + + ++ K R+  L  NL +   +   +   D          FD +LVD
Sbjct: 119 LLNSVLHPDSLLVSNEIIKTRVNVLADNLTKWGNFNVVVTNNDPQSFNRLPGFFDLMLVD 178

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS +G  R+    +     + +   +  Q+++L   +S +K  GI+++S CS   +++
Sbjct: 179 APCSGSGMFRKDEQTISEWSEETVNLCSQRQQRILSDSLSTIKEDGILIYSTCSYSIEEN 238

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           EE+   ++ +  +    +P + A+      +      G+ R  P  +           GF
Sbjct: 239 EEIADWLVANHDMQSIPIPHDLAWQIEETRSPKFQCHGY-RFYPHKVRGE--------GF 289

Query: 434 FAVALRRL 441
           +    R+ 
Sbjct: 290 YVACFRKK 297


>gi|74151867|dbj|BAE29720.1| unnamed protein product [Mus musculus]
 gi|74207211|dbj|BAE30795.1| unnamed protein product [Mus musculus]
          Length = 757

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPLPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDLDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 441


>gi|255721361|ref|XP_002545615.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240136104|gb|EER35657.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 714

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 44/263 (16%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----------SGAKVTALDVS 272
              Q+A + IP  L     +  VLD+CAAPG KTAQLI               V A D  
Sbjct: 155 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLIEALHADDEKKLPTGFVLANDSD 214

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             FD +L D PCS  GT+R+
Sbjct: 215 YKRSHMLVHQVKRLNSPNFLVVNHDATLFPRIRLNNTQQDLKFDRILCDVPCSGDGTMRK 274

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  +K GG +V+S CSL   ++E +V   LR  
Sbjct: 275 NLNVWKDFRVGNALGLHSVQELILNRGLQLLKKGGRLVYSTCSLSPIENEAIVASALRKW 334

Query: 385 PIPVELVPLNSAYWKS--------------------------IDMAMALSPEGWIRITPD 418
              + LV +++                                  A   + E   +   +
Sbjct: 335 GDQIRLVNVDNELPGLKRRQGVTDWKVYGKDMELREPGAEDVPATAFPPTKEEVEKFHLE 394

Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441
              ++        GFF     ++
Sbjct: 395 NCVRVYPHLQNTGGFFITVFEKI 417


>gi|167378230|ref|XP_001734725.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165903651|gb|EDR29107.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 630

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 113/327 (34%), Gaps = 52/327 (15%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAE 220
           E +  + +   +     + + +     A++LNA        +  E      IV       
Sbjct: 80  EELKRLINNIDNKQERPVELSWYPGGIAYQLNASRGEIQKNKSLEELRRFIIVQTEA--- 136

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------VTALDVS 272
           GV   Q+A + IP           VLDLCAAPG KT Q++             V A D  
Sbjct: 137 GVISRQEAVSMIPPLFLNVKPYHDVLDLCAAPGSKTTQILEMIHSGPEEATGIVIANDSD 196

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFDAVLVDAPCSSTGTIRRHPD 327
            +R E L     RL      I    A +Y          FD VL D PCS  GT+R++PD
Sbjct: 197 YKRCELLDHQTKRLQSPNIIITNHLAQNYPIKIGDQFMKFDRVLCDVPCSGDGTLRKNPD 256

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                +    +     Q  ++ + +  VK  G  V+S CSL+  + E VV  +LR+ P  
Sbjct: 257 AWGKWNIMRGINLHKTQCTIMRRAVRLVKSCGRFVYSTCSLNPYEDEAVVAFILRNYP-Q 315

Query: 388 VELVPLNSAYW---------------------------------KSIDMAMALSPEGWIR 414
           + LV +++                                    K        + E   R
Sbjct: 316 IRLVDVSTELPTLKRCKGVSSWKVFNKEGEELTIKPDSKEDGSSKIPSTLFPPTEEEAKR 375

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
              D   +         GFF   L ++
Sbjct: 376 FRLDRCMRFLPQLQNTGGFFVAVLEKV 402


>gi|94494607|gb|ABF29536.1| Myc-induced SUN domain containing protein [Mus musculus]
          Length = 757

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 441


>gi|146325700|sp|A0KW34|RSMF_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 482

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 23/261 (8%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254
               G     +  E + +     +G++++Q+AS+ +P         +   VLDL +APG 
Sbjct: 65  WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 124

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309
           KT Q+   + +   + A + S  R++ L  N+ R+      +   D   +     + FDA
Sbjct: 125 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 184

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPC   GT+R+  D L +   D++++ +  Q+ L+      +KPGG +V+S C+L+
Sbjct: 185 VLIDAPCGGEGTVRKDADALKSWSLDEVIEISETQKALIESAFLALKPGGSLVYSTCTLN 244

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++ V + + ++    V+   L+  +        A +PEG++ + P + +        
Sbjct: 245 RHENQGVCEYLQQTYGDAVQFESLSQLF---DGAEKATTPEGFLHVWPQIYDSE------ 295

Query: 430 MDGFFAVALRR-----LIQPK 445
             GFF   L +      +QP+
Sbjct: 296 --GFFVAKLTKTRSVPRLQPE 314


>gi|146325695|sp|Q6LQU5|RSMF_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 476

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 21/245 (8%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL--DLCAAPGGKTA---QLIVSGAK 265
           S+ +      G++++Q+AS+ +PV      N+      D+ +APG KT      + +   
Sbjct: 84  SLGNTAEHMAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGV 143

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIR 323
           + A +++  R++ L  NL R  +Y   +   D   +     + FD +L+DAPCS  G IR
Sbjct: 144 LVANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTILLDAPCSGEGAIR 203

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           +  D +       I   A  QR L++     +K GG++V+S C+L+  +++ V   +  +
Sbjct: 204 KDGDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGMMVYSTCTLNLSENQHVCHFLKET 263

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR--- 440
               VE  PL   +        +L+ +G++ + P + +          GFF   +R+   
Sbjct: 264 FGDAVEFEPLGDLFE---GAEKSLTEDGFLHVYPQIFDSE--------GFFVARIRKHAA 312

Query: 441 LIQPK 445
           +  PK
Sbjct: 313 VETPK 317


>gi|167624296|ref|YP_001674590.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
           halifaxensis HAW-EB4]
 gi|189045729|sp|B0TIZ6|RSMF_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|167354318|gb|ABZ76931.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella
           halifaxensis HAW-EB4]
          Length = 479

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 27/261 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN-----------NLSV 245
               G          + +     +G++++Q+AS+ +P       +              V
Sbjct: 65  WCNQGFWVTISSDLQLGNTIEHLQGLFYIQEASSMLPPTALFDSHADNENDLSQFAQTRV 124

Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD+ +APG KT Q+   + +   + A + S  R++ L  N+ R+ +    +   DA  + 
Sbjct: 125 LDMASAPGSKTTQIAALMNNQGLLVANEYSASRVKVLHANVARMGVSNCALTHFDARVFG 184

Query: 303 PK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD+VL+DAPCS  GTIR+ PD L   D +D       Q+ L+      +K GG 
Sbjct: 185 EYLFETFDSVLLDAPCSGEGTIRKDPDALKNWDNNDNKGIVDTQKALIESAFLALKVGGC 244

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+L +Q++++V   +  +    VE   L   +    D   A + EG++ + P + 
Sbjct: 245 LVYSTCALSRQENQDVCHHLKTAFGEAVEFAALTELFP---DADKACTEEGFLHVWPQIY 301

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
           +          GFF   +R++
Sbjct: 302 DSE--------GFFVAKIRKV 314


>gi|24379570|ref|NP_721525.1| methylase [Streptococcus mutans UA159]
 gi|24377516|gb|AAN58831.1|AE014951_2 conserved hypothetical protein; possible methylase [Streptococcus
           mutans UA159]
          Length = 436

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 117/298 (39%), Gaps = 25/298 (8%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           +P+ F E+ +   G +    +      P++   T     E    +        G      
Sbjct: 3   LPDKFVEKYQTILGSKAKTFLKSFDQEPIWAFRTNPLKKEQLLFEDAIPNTVWGHYGKVF 62

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264
              +         G+ + Q+ +A + VQ       + VLDL AAPGGKT      + +  
Sbjct: 63  GKSA-----EHVSGLVYSQEPAAQMVVQAAAPQKGMKVLDLAAAPGGKTTHLLSYLDNSG 117

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTI 322
            + + D+SK+R + L  N++R       +      +        FD +++DAPCS  G  
Sbjct: 118 ILVSNDISKKRSKILVENVERFGARNVVVTNESPQNLAKVFGNYFDLIVLDAPCSGEGMF 177

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+ P  +        V+ A  Q+K+L + +  +  GG +V+S C+   +++E V++ +L 
Sbjct: 178 RKDPAAIQYWHEAYPVECAELQKKILAEAMKMLAAGGNLVYSTCTWAPEENEAVIRWLLS 237

Query: 383 SSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                 +  VP  +   + IDM          R+ P + +            F   LR
Sbjct: 238 QYDYLELVNVPKLNGMVQGIDMPQVA------RMYPHLFKGEGQ--------FIAKLR 281


>gi|325298387|ref|YP_004258304.1| Fmu (Sun) domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324317940|gb|ADY35831.1| Fmu (Sun) domain protein [Bacteroides salanitronis DSM 18170]
          Length = 471

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 125/301 (41%), Gaps = 16/301 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F  R     G+ +  A  +       + + +              +   G    
Sbjct: 1   MNLPVDFITRTGGLLGEGQFAAFRETLAKEPPVSIRMNRLKTDAVPAGGRQVPWCGSGYY 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI--- 260
                +    P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+       
Sbjct: 61  LASRPTFTFDPLFHAGCYYVQEASSMFLEQVLTQYVHEPVVMLDLCAAPGGKSTLARSVL 120

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319
             G+ + A +V + R++ L  N+ +    +  ++  D  D+ P  +LFD +L D PCS  
Sbjct: 121 PEGSLLVANEVMRNRVQVLAENVTKWGHPSTVVLNNDPADFVPLGELFDVILTDVPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ P  +     +++      QR+++      +KPGG++V+S C+ +++++E+ V  
Sbjct: 181 GMFRKDPVAVEEWSVENVTLCWQRQRRIVRDIWHCLKPGGLLVYSTCTYNREENEDNVAW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +       +  V + S +  S ++A    P    R  P   E          G F V LR
Sbjct: 241 IAEELGAEILPVEVQSGWNISGNLAGKDFP--VYRFLPHRTEGE--------GLFMVVLR 290

Query: 440 R 440
           +
Sbjct: 291 K 291


>gi|329667270|gb|AEB93218.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii DPC 6026]
          Length = 463

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 16/302 (5%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F E+ +N  G+E       A  SP      +      +     ++  P    + 
Sbjct: 1   MSLPIEFVEKYKNLLGEEESSKFFTAINSPSKKGFRLNPLKNNYQDVQYSLKEPIEFTKD 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262
               E       +  G  + QD SA  P           VLDLCAAPGGK+      + +
Sbjct: 61  GYYGEISGRDSEWTGGYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASSLDN 120

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              +   ++SK R + LR NL+R       +     D         FD +LVDAPCS  G
Sbjct: 121 SGLLVVNEISKSRAKDLRENLERWGATNVVVTNESPDRLSKKLPHFFDKILVDAPCSGEG 180

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P        D ++     Q+++L + +  +KPGG +V+S C+   ++ EE+V  +
Sbjct: 181 MFRKDPAATQYWSPDYVLTCQTRQKEILSEAMKMLKPGGEIVYSTCTYSPEEDEEIVAWL 240

Query: 381 LRSSPIPVELVPLNSAYWKS-IDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + +  + +E + L S       + + +  PE    +R+                  F   
Sbjct: 241 VENYLLEIEPLKLYSGMSAGRPEWSKSNLPELKETVRLWFQNGVGEGQ--------FVAH 292

Query: 438 LR 439
           L+
Sbjct: 293 LK 294


>gi|149238756|ref|XP_001525254.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450747|gb|EDK45003.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 724

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 102/271 (37%), Gaps = 60/271 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272
              Q+A + IP  L     +  VLD+CAAPG KTAQ            +    V A D  
Sbjct: 173 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLVEALHAEDEKKLPTGFVLANDSD 232

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324
            +R   L   + RL+     ++  DA  +             +D +L D PCS   T+R+
Sbjct: 233 YKRSHMLVHQVKRLNSPNFLVVNHDAQLFPRVKLNGEAEYLKYDRILCDVPCSGDATMRK 292

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           + +V       + +     Q  +L +G+  +K GG +V+S CSL   ++E VV + LR  
Sbjct: 293 NINVWKDFRVGNALGLHPLQFNILNRGLQLLKRGGRLVYSTCSLSPIENEAVVAEALRRW 352

Query: 385 PIPVELVPLNSA----------------------------------YWKSIDMAMALSPE 410
              ++LV +++                                   +  + + A   + +
Sbjct: 353 GKKIKLVNVDNESPGLKRRQGISDWKVFGKDMEIKNKGEDGLPDTLFPPTEEEAKDFNLQ 412

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +R+ P +            GFF     +L
Sbjct: 413 NCVRVYPHLQ--------NTGGFFITVFEKL 435


>gi|86160523|ref|YP_467308.1| tRNA and rRNA cytosine-C5-methylase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777034|gb|ABC83871.1| tRNA and rRNA cytosine-C5-methylase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 429

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 21/233 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVT 267
           ++  L  + EG++ VQD  + +  +  G     +VLD CA  GGKT  L  +     +V 
Sbjct: 213 NVYGLGAWQEGLFEVQDEGSQLLGEAVGARAGEAVLDACAGAGGKTLLLAAAVGAAGRVH 272

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           A D    RL +LR             +         +   D  LVDAPCS  G +RR PD
Sbjct: 273 AADPDAGRLVRLRTRALAAGAARIVAVHG--AAAPAELRVDRALVDAPCSELGALRRGPD 330

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           + W  D          Q ++L +  + V+PGG +V++ C+  + + E+V +    + P  
Sbjct: 331 LRWRLDPAAFAALPALQARILERAAAHVRPGGRLVYATCTFRRAEDEDVAEAFEAAHPEF 390

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               P           A  L+P+G++R  P           G D FFA A  R
Sbjct: 391 ARAAPDAP--------ASTLTPDGFLRTWPH--------RHGTDAFFAAAWVR 427


>gi|170726339|ref|YP_001760365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella woodyi
           ATCC 51908]
 gi|254766869|sp|B1KQN1|RSMF_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|169811686|gb|ACA86270.1| RNA methylase, NOL1/NOP2/sun family [Shewanella woodyi ATCC 51908]
          Length = 478

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 119/255 (46%), Gaps = 20/255 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT----LNNLSVLDLCAAP 252
               G     +    + +     +G++++Q+AS+ +P           +  ++LD+ +AP
Sbjct: 65  WCSDGFWVALDNEIQLGNTIEHIQGLFYIQEASSMLPPTALFDGLDNSSEYTILDMASAP 124

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLF 307
           G KT Q+   + +   + A + S  R++ L  N+ R+ +Y   +   DA  +       F
Sbjct: 125 GSKTTQMASLMDNKGLLVANEYSSSRVKVLHANVQRMGVYNTALTHFDARVFGEYLYHQF 184

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           DA+L+DAPCS  GTIR+ P  L     ++       Q+ L+      +K GG +V+S C+
Sbjct: 185 DAILLDAPCSGEGTIRKDPLALRNWSLEENASIIETQKALIESAFLALKTGGSLVYSTCA 244

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L + +++EV + ++   P  VE   L+  +    D   + + EG++ + P + +      
Sbjct: 245 LSRSENQEVCEHLMSCFPQAVEFQSLSELFP---DADKSCTSEGFLHVWPQIYDSE---- 297

Query: 428 SGMDGFFAVALRRLI 442
               GFF   +R++ 
Sbjct: 298 ----GFFIAKVRKVA 308


>gi|15789727|ref|NP_279551.1| proliferating-cell nucleolar antigen [Halobacterium sp. NRC-1]
 gi|169235442|ref|YP_001688642.1| rRNA methylase [Halobacterium salinarum R1]
 gi|10580101|gb|AAG19031.1| proliferating-cell nucleolar antigen [Halobacterium sp. NRC-1]
 gi|167726508|emb|CAP13293.1| putative rRNA methylase [Halobacterium salinarum R1]
          Length = 303

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 110/272 (40%), Gaps = 13/272 (4%)

Query: 177 YIDLTVKFDIETWAHKLNAV-MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            + +T    +E  A +  AV         L+       +   +  G    Q+  + +P +
Sbjct: 33  PLAVTPDRAVEALAAEGVAVDRREWHPGVLEVDTNKPGNTWPYVHGWVHGQEEVSCVPPR 92

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           +        V D CAAPGGKTAQ    I     V A D +  RL  LR N DRL + +  
Sbjct: 93  VLDPEPGDVVWDACAAPGGKTAQIAAEIDDDGLVVANDDNLGRLSALRGNCDRLGVTSAA 152

Query: 293 IIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           +   DA       +      DA LVDAPCS  GTIR++ D L              Q  +
Sbjct: 153 VTNTDARRATLDAFPDVAAVDAALVDAPCSCEGTIRKNADALDGAGASASRSLGRLQADI 212

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L + ++  +PGG VV+S C+   +++E VV +VL  +   +    +  A    +      
Sbjct: 213 LARAVALTRPGGTVVYSTCTFAPEENEAVVDEVLGRTDSRLVEFDVGLASAPGLTEWGDA 272

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           S +  +       ++     +   GFFA  L 
Sbjct: 273 SYDDSL----ARAQRYYPHHNDTGGFFAAKLE 300


>gi|213627328|gb|AAI71126.1| NOL1/NOP2/Sun domain family, member 2 [Xenopus (Silurana)
           tropicalis]
          Length = 798

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 136/418 (32%), Gaps = 69/418 (16%)

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148
           +  +  Y ++     +     Q  +   +  +     + LR      I +    +    I
Sbjct: 34  AAWECGYPEIIKENKLFEHYYQELKIVPDGEW-DKFMASLREPLPATIRITGYKSHAKEI 92

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208
               KE+         V    D         L+   +   W   L+  ++       K  
Sbjct: 93  LHCLKEKYFKELQDIEV----DGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFH 148

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQ 258
              +        G    Q+A + IP  L     +  +LD+CAAPG KT            
Sbjct: 149 QFLVNETES---GNISRQEAVSMIPPVLLKVQPHHKILDMCAAPGSKTAQIIEMLHADMN 205

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFD 308
           +      V A DV  +R   L     RL+     ++  DA                  +D
Sbjct: 206 VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLVENNGSREVLYYD 265

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG +V+S CSL
Sbjct: 266 RILCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSL 325

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI---------- 413
           +  + E V+  +L  S   +EL  + S      +   I     ++ EG            
Sbjct: 326 NPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEGHWYEKWEDIPTS 385

Query: 414 ---RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
              +I P M                  +I        GFF   L +         QPK
Sbjct: 386 RHTQIRPTMFPPKDEEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMPWNKRQPK 443


>gi|148705068|gb|EDL37015.1| NOL1/NOP2/Sun domain family 2, isoform CRA_a [Mus musculus]
          Length = 782

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 183 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 242

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 243 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 302

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 303 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 362

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 363 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 422

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 423 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 466


>gi|67475318|ref|XP_653353.1| tRNA (cytosine-5-)-methyltransferase [Entamoeba histolytica
           HM-1:IMSS]
 gi|56470296|gb|EAL47967.1| tRNA (cytosine-5-)-methyltransferase, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 630

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 113/327 (34%), Gaps = 52/327 (15%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAE 220
           E +  + +   +     + + +     A++LNA        +  E      IV       
Sbjct: 80  EELKRLINNIENEQERPIELSWYPGGIAYQLNASRGEIQKNKSLEELRKFIIVQTEA--- 136

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------VTALDVS 272
           GV   Q+A + IP           VLDLCAAPG KT Q++             V A D  
Sbjct: 137 GVISRQEAVSMIPPLFLNVKPYHDVLDLCAAPGSKTTQILEMIHSGPEEATGIVIANDSD 196

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFDAVLVDAPCSSTGTIRRHPD 327
            +R E L     RL      I    A +Y          FD VL D PCS  GT+R++PD
Sbjct: 197 YKRCELLDHQTKRLQSPNIIITNHLAQNYPVKIGDQFMKFDRVLCDVPCSGDGTLRKNPD 256

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                +    +     Q  ++ + +  VK  G  V+S CSL+  + E VV  +LR+ P  
Sbjct: 257 AWGKWNIMRGINLHKTQCTIMRRAVRLVKSCGRFVYSTCSLNPYEDEAVVAFILRNYP-Q 315

Query: 388 VELVPLNSAYW---------------------------------KSIDMAMALSPEGWIR 414
           + LV +++                                    K        + E   R
Sbjct: 316 IRLVDVSTELPTLKRCKGVSSWKVFNKEGEELTIKPDSKEDGSSKIPSTLFPPTEEEAKR 375

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
              D   +         GFF   L ++
Sbjct: 376 FRLDRCMRFLPQLQNTGGFFVAVLEKV 402


>gi|193785163|dbj|BAG54316.1| unnamed protein product [Homo sapiens]
          Length = 391

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 23/272 (8%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D+     K   +      + +      +   P +  G   +QD ++ +P  L        
Sbjct: 132 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 191

Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L R  +   ++ E D    
Sbjct: 192 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 251

Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF- 354
            P          +L+D  CS +G   R        T     +   A FQ++ L   ++F 
Sbjct: 252 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 311

Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++    +V+S CSL ++++E+VV+  L+ +P    L P   A W    ++     E  +
Sbjct: 312 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 367

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
           R +P+             GFF   + R   P+
Sbjct: 368 RASPETTLSS--------GFFVAVIERAEVPR 391


>gi|332295840|ref|YP_004437763.1| Fmu (Sun) domain protein [Thermodesulfobium narugense DSM 14796]
 gi|332178943|gb|AEE14632.1| Fmu (Sun) domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 420

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/453 (15%), Positives = 162/453 (35%), Gaps = 50/453 (11%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
             +R  +   L  ++ +   L  +            L+ RD+   + +VN+ L+   ++ 
Sbjct: 4   TASRFYAFKTLKRIIYQGAYLHLVTRNI-------NLNGRDRAFFKLLVNLVLKSGYKLF 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             L         +   S    L +++ ++  L    Y V        ++D   + F    
Sbjct: 57  EKLSK------EKLSNSEVIALMMALVELKILGKEKYIVFSQYKSIPEKDFSEKRF---- 106

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                +  ++       I     +P +   ++ +      + + +   +S       V  
Sbjct: 107 ----FKTLKKLENEKNLIENEISLPNFIINQIVDSKLD--INSFTKNFVSTPMTGFFVLS 160

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA----EGVWWVQDASASIPVQLFGTL 240
             +     LN++       R+ +      S         +  + V   S+ + V L    
Sbjct: 161 HSKEILDLLNSLSGKLYPGRIFKNYYYTESFAEVLGILPKDCYIVISESSMLSVLLLEPK 220

Query: 241 NNLSVLDLCAAPGGK----------TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
               +L++ A+PGGK              +    KV ++D+S+ R+  L+   ++  L  
Sbjct: 221 PGEKILEVGASPGGKSVFLEYVLKNYKDNLNKPKKVISVDISESRISALKKTCEKYKLKL 280

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +             + D +L+DAPCS   T+   PD+++     DI   A  Q  +L  
Sbjct: 281 INPTLYTKKTVFD--VSDKILIDAPCSGLSTLDSKPDIIFHLKESDIKLLAKKQEDILNY 338

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
              F++  G +V+S C+  + + +  ++K L+ +        + S+ + + D+   +  +
Sbjct: 339 YKDFIRVKGKLVYSVCTFTEMEGKGQIEKFLQKNKNFKTFEGVLSSKYINQDI---IIKD 395

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           G + I  + L            FF   L ++ +
Sbjct: 396 GMLDIDWNALSLEP--------FFICCLEKVDE 420


>gi|146084114|ref|XP_001464926.1| methyltransferase [Leishmania infantum JPCM5]
 gi|134069021|emb|CAM67165.1| putative methyltransferase [Leishmania infantum JPCM5]
          Length = 847

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 136/373 (36%), Gaps = 46/373 (12%)

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
            ++++  +   A   N   + V  E    +Q ++     P     RL +         I+
Sbjct: 179 LSEKNGSHPEIASAGNGSRKNVDSEWSAFVQSMST----PLPMTLRLHHSERALEA--IA 232

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
              ++   I   V+  +  +                 +  E +      A      Q+  
Sbjct: 233 TRMLTTPDIAAVVRP-VAAFPSTSGLYSCSNSDYHSHKRVEYVCRT-LHAASAVSFQEVV 290

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDVSK-RRLE 277
           ++IPV +       +V+DLCAAPG KT               V    + A +  + +  +
Sbjct: 291 SAIPVFVLDVQPQHTVVDLCAAPGSKTVQALDTMLSGGWSADVCRGVLIANEKDRVKATQ 350

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVLVDAPCSSTGTIR 323
            L   L R H         D   +                +  FD ++ D PCS  GTIR
Sbjct: 351 TLPARLKRYHAPNVMTTRCDGVQWPRLYLDDPTNSSSELQELRFDRIICDVPCSGDGTIR 410

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           +   +  T     +      QR LL +G+  +  GGI+V+S CS+D ++ EEVV   L +
Sbjct: 411 KERSIATTWSASYVKSLVPTQRALLCRGLDLLATGGILVYSTCSMDPKEDEEVVCVGLEA 470

Query: 384 SPIPVELVPLNSAY------WKSIDMAMALSPEGWIR-ITP-----DMLEKIDGVSSGMD 431
               VEL+ +N+          S    ++ + EG    + P     + + +I        
Sbjct: 471 FGDSVELIDVNAVLQQKGFHLHSAGGILSPNVEGMQHPVLPPTYDGNKVLRILPHRDDTG 530

Query: 432 GFFAVALRRLIQP 444
           GFF  A R++ QP
Sbjct: 531 GFFVAAFRKVKQP 543


>gi|62857697|ref|NP_001015962.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Xenopus (Silurana)
           tropicalis]
 gi|123892686|sp|Q28E61|NSUN2_XENTR RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName:
           Full=NOL1/NOP2/Sun domain family member 2
 gi|89271920|emb|CAJ83692.1| novel NOL1/NOP2/Sun domain family protein [Xenopus (Silurana)
           tropicalis]
          Length = 798

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 136/418 (32%), Gaps = 69/418 (16%)

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148
           +  +  Y ++     +     Q  +   +  +     + LR      I +    +    I
Sbjct: 34  AAWECGYPEIIKENKLFEHYYQELKIVPDGEW-DKFMASLREPLPATIRITGYKSHAKEI 92

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208
               KE+         V    D         L+   +   W   L+  ++       K  
Sbjct: 93  LHCLKEKYFKELQDIEV----DGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFH 148

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQ 258
              +        G    Q+A + IP  L     +  +LD+CAAPG KT            
Sbjct: 149 QFLVNETES---GNISRQEAVSMIPPVLLKVQPHHKILDMCAAPGSKTAQIIEMLHADMN 205

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFD 308
           +      V A DV  +R   L     RL+     ++  DA                  +D
Sbjct: 206 VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLVENNGSREVLYYD 265

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG +V+S CSL
Sbjct: 266 RILCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSL 325

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI---------- 413
           +  + E V+  +L  S   +EL  + S      +   I     ++ EG            
Sbjct: 326 NPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEGHWYEKWEDIPTS 385

Query: 414 ---RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
              +I P M                  +I        GFF   L +         QPK
Sbjct: 386 RHTQIRPTMFPPKDEEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMPWNKRQPK 443


>gi|113970005|ref|YP_733798.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. MR-4]
 gi|113884689|gb|ABI38741.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. MR-4]
          Length = 509

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 123/261 (47%), Gaps = 23/261 (8%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254
               G     +  E + +     +G++++Q+AS+ +P         +   VLDL +APG 
Sbjct: 93  WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 152

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309
           KT Q+   + +   + A + S  R++ L  N+ R+      +   D   +     + FDA
Sbjct: 153 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 212

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPC   G +R+  D L +   D++++ +  Q+ L+      +KPGG +V+S C+L+
Sbjct: 213 VLIDAPCGGEGIVRKDADALKSWSLDEVLEISETQKALIESAFLALKPGGSLVYSTCTLN 272

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++ V + + ++    V+   LN  +        A +PEG++ + P + +        
Sbjct: 273 RHENQGVCEYLQQTYGDAVQFESLNQLF---DGAEKATTPEGFLHVWPQIYDSE------ 323

Query: 430 MDGFFAVALRR-----LIQPK 445
             GFF   L +      +QP+
Sbjct: 324 --GFFVAKLTKTRSVPRLQPE 342


>gi|227432320|ref|ZP_03914313.1| tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351926|gb|EEJ42159.1| tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 469

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 31/241 (12%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
            + Q+ SA    ++        VLDL AAPGGK+      +     + + ++   R + L
Sbjct: 76  VYSQEPSAQFVGEVVRPNPCERVLDLAAAPGGKSTHLAAFMGQKGLLWSNEIFLNRAKIL 135

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R+ +    +      +   K    FD +L+DAPCS  G  R+ P  +        
Sbjct: 136 SENIERMGIKNAIVSSHTPVELSSKLPSFFDKILLDAPCSGEGMFRKDPGAIAYWHEHYP 195

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI----------- 386
            ++A  QR++L + +  ++PGG +V+S C+   ++ E+++  ++ + P            
Sbjct: 196 AENATRQREILTEAVKMLRPGGQIVYSTCTFAPEEDEQIINWLMAAYPEFSLVSIEKPDG 255

Query: 387 ----PVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                     ++ A+        A + +      R+ P  LE          G F   L 
Sbjct: 256 ANLSDARHEWIDEAFVNGTTEHSATTKDVMKKAARLWPHKLEGE--------GHFVAKLV 307

Query: 440 R 440
           +
Sbjct: 308 K 308


>gi|90410339|ref|ZP_01218355.1| putative sun/nucleolar protein family protein [Photobacterium
           profundum 3TCK]
 gi|90328580|gb|EAS44864.1| putative sun/nucleolar protein family protein [Photobacterium
           profundum 3TCK]
          Length = 476

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 21/245 (8%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL--DLCAAPGGKTA---QLIVSGAK 265
           S+ +      G++++Q+AS+ +PV      N+      D+ AAPG KT      + +   
Sbjct: 84  SLGNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMAAAPGSKTTQIACAMQNRGA 143

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIR 323
           + A +++  R++ L  NL R  +Y   +   D   +     + FD +L+DAPCS  G IR
Sbjct: 144 LVANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTILLDAPCSGEGAIR 203

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           +  D +       I   A  QR L++     +K GG++V+S C+L+  +++ V   +  +
Sbjct: 204 KDDDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGMMVYSTCTLNLSENQHVCHFLKET 263

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR--- 440
               VE  PL   +        +L+ EG++ + P + +          GFF   +R+   
Sbjct: 264 FGDAVEFEPLGDLFE---GAEKSLTEEGFLHVYPQIFDSE--------GFFVARIRKHAS 312

Query: 441 LIQPK 445
           +  PK
Sbjct: 313 VETPK 317


>gi|323700254|ref|ZP_08112166.1| Fmu (Sun) domain protein [Desulfovibrio sp. ND132]
 gi|323460186|gb|EGB16051.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans ND132]
          Length = 427

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 15/257 (5%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                       RL   P  +        G+ ++QD S+ +P          SVLD+C+A
Sbjct: 30  DFEPEPFFVHARRLVREPFPLGESLAARFGLVYIQDRSSMLPPLTLAPPVGASVLDMCSA 89

Query: 252 PGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307
           PG KT   ++L+     V A + S  RL  LR NL R         +  A D       +
Sbjct: 90  PGSKTGLLSRLVGPQGFVFASEPSADRLATLRANLRRTGSVNTATAKAMAQDLPFADGTW 149

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
             + +D PCS  GT+ ++P V+              Q+ LL + ++ ++PGG+V++S C+
Sbjct: 150 GHIQLDPPCSGWGTVDKNPKVMEVWSGSKTAPLVALQKTLLEKAVALLRPGGVVLYSTCT 209

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
            + +++E+     L +  + ++L PL        +       +G +R+            
Sbjct: 210 TNIEENEDQTAWALET--LDLDLAPLAEPAGFVFEPPHRPGLDGVLRV---------AED 258

Query: 428 SGMDGFFAVALRRLIQP 444
           S   GFF     +   P
Sbjct: 259 SDGQGFFLARFTKRGAP 275


>gi|294673976|ref|YP_003574592.1| NOL1/NOP2/sun family protein [Prevotella ruminicola 23]
 gi|294473115|gb|ADE82504.1| NOL1/NOP2/sun family protein [Prevotella ruminicola 23]
          Length = 407

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 121/310 (39%), Gaps = 25/310 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE------TWAHKLNAVMLP 199
             +P  F        G ER      A        + V   I       T  H  + V   
Sbjct: 1   MNLPADFVAETRRIMGDERYNRFVGAFDEEAPTSIRVNPRIAIDHGPLTMDHSDSQVPWC 60

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN-----LSVLDLCAAPGG 254
           + G  L + P+     P    G ++VQ+AS+     +   +          LDLCAAPGG
Sbjct: 61  SEGYYLNDRPQFTFD-PLLHAGCYYVQEASSMFVTHILRNVQCSMVNVQCALDLCAAPGG 119

Query: 255 KTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310
           K+  L         + + +    R + L  N+ +       +      D+   K  FD +
Sbjct: 120 KSTALRSVLPDDCVLISNEPMGNRAQILLENVTKWGGPNHIVTNNYPRDFRKAKLKFDLI 179

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  G  R+ P+ +      ++ K    QR+++      + PGG++++S C+ + 
Sbjct: 180 LCDVPCSGEGMFRKDPNAISEWSAQNVEKCWQLQREIVADAWECLNPGGLLIYSTCTYNT 239

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           +++EE ++ +L +    V  +P++ ++  +  +    + E   R  P +           
Sbjct: 240 KENEENIRWILDTYDAQVLDIPVDPSWNITGSLLQGFN-EPVYRFIPGITRGE------- 291

Query: 431 DGFFAVALRR 440
            G F  ALR+
Sbjct: 292 -GLFVCALRK 300


>gi|146325701|sp|Q0HJM6|RSMF_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 481

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 123/261 (47%), Gaps = 23/261 (8%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254
               G     +  E + +     +G++++Q+AS+ +P         +   VLDL +APG 
Sbjct: 65  WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 124

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309
           KT Q+   + +   + A + S  R++ L  N+ R+      +   D   +     + FDA
Sbjct: 125 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 184

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPC   G +R+  D L +   D++++ +  Q+ L+      +KPGG +V+S C+L+
Sbjct: 185 VLIDAPCGGEGIVRKDADALKSWSLDEVLEISETQKALIESAFLALKPGGSLVYSTCTLN 244

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++ V + + ++    V+   LN  +        A +PEG++ + P + +        
Sbjct: 245 RHENQGVCEYLQQTYGDAVQFESLNQLF---DGAEKATTPEGFLHVWPQIYDSE------ 295

Query: 430 MDGFFAVALRR-----LIQPK 445
             GFF   L +      +QP+
Sbjct: 296 --GFFVAKLTKTRSVPRLQPE 314


>gi|307110087|gb|EFN58324.1| hypothetical protein CHLNCDRAFT_30164 [Chlorella variabilis]
          Length = 399

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 32/245 (13%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           + E    + + P +  G + +Q AS+ +P           V+D+ AAPGGKT  L   + 
Sbjct: 65  VYESQVPVGATPEYMAGHYMLQGASSFLPCMALAPQEGEQVVDVAAAPGGKTTYLAALMR 124

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSS 318
           +   + A +++K RL  L  NL R+ +    +   D         ++  D VL+DAPCS 
Sbjct: 125 NTGVLFANEINKERLTSLTANLQRMGVTNTIVCNYDGRQLPRVLGERSVDRVLLDAPCSG 184

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           TG I + P V                   L  G      G +VV+S CS+  +++E VV 
Sbjct: 185 TGVISKDPTVKV------------GGSLGLPSGA-----GVVVVYSTCSMMVEENENVVN 227

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAV 436
             L+   + V    L       I            R  P +    +    +  +DGFF  
Sbjct: 228 YALKRRDVKVVPCGLEFGRPGFIRFR-------DFRFHPSLAEARRFYPHAHNLDGFFVC 280

Query: 437 ALRRL 441
            L+++
Sbjct: 281 KLKKM 285


>gi|324510580|gb|ADY44425.1| Ribosomal RNA methyltransferase [Ascaris suum]
          Length = 583

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 16/237 (6%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
           A      G+ + +    + + P +  G + +Q  S+ +PV       N  VLD+CAAPGG
Sbjct: 354 AAKWTKVGLVVYDSQFPVGATPEYLAGHYMIQGLSSFLPVMALAPQPNELVLDMCAAPGG 413

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309
           KT+ +   + +   V A D +  R   +  NL R+ +    +  +D   +       FD 
Sbjct: 414 KTSHIAALMKNTGVVFANDSNMVRCRAIIGNLHRMGVNNAVVSNLDGKVFAKTMAQGFDR 473

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSN 365
           VL+DAPCS TG I +   V  +RD+ D+ +    QR+L+L  I  +      GG +V+S 
Sbjct: 474 VLLDAPCSGTGVIWKDDSVKTSRDSQDVQRRHTVQRQLILAAIDAINAKSSTGGYLVYST 533

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           CS+  +++E VV  VLR     +    L              +     R  P +   
Sbjct: 534 CSVLVEENEAVVDYVLRKRDCKLVPTGLEIGV-------EGFTKFREYRFHPSLNLT 583


>gi|294938748|ref|XP_002782179.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239893677|gb|EER13974.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 655

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 135/443 (30%), Gaps = 90/443 (20%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75
             V +    +   L   +       ++  D+  +   +    R+   ID          +
Sbjct: 288 DKVKQHHTPVDMFLHRYFQAHR--AINADDRAWISDHMYELFRWQGLIDH----CTPKPV 341

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
             +        R+                                         R     
Sbjct: 342 STRG-------RLYTY----------------------------------LTSDRWRSNA 360

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET------- 188
                     + +P+    RL +  G ++ + +S          L V  +  +       
Sbjct: 361 QNRRLDPHIRTSMPKELFGRLADSLGTDKAVEVSSVLNERPVTFLRVNINQSSRSDMMKF 420

Query: 189 -WAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
             + +++     T  + L    + ++  LP +  G   +QD S+ I            VL
Sbjct: 421 LLSKEISVEKTATSPVGLVINDKKLLLDLPEYRSGAVEIQDESSQIMALQVKADPGSVVL 480

Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           D CA  GGK       + +   +   DV    L   R  L R  +    ++         
Sbjct: 481 DYCAGSGGKSLVFGPNMQNTGHLYLHDVRDSMLRDARKRLRRAGIRNYTLLYPRHPTLHK 540

Query: 304 K--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGI 360
                 D VL D PCS TG +RR+PD  W    + +      QR+++   + ++KP GG 
Sbjct: 541 MLLGKCDWVLCDVPCSRTGVLRRNPDAKWMYSDEKLFHFVALQREIVRNSLRYLKPKGGK 600

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+   S+  +++   +Q + R   + +   P+++                         
Sbjct: 601 LVYCTNSILDEENILQIQHLCRFHELVLSEEPMHA------------------------- 635

Query: 421 EKIDGVSSGMDGFFAVALRRLIQ 443
                 S GMDGFF+  L R   
Sbjct: 636 ---MPQSKGMDGFFSATLERKST 655


>gi|328723670|ref|XP_001950139.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase CG6133-like
           [Acyrthosiphon pisum]
          Length = 689

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 107/302 (35%), Gaps = 61/302 (20%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            +LK   + I     +                  Q+  + IP  L     +  VLD+CAA
Sbjct: 128 WQLKITRKDIRGSEAYYRLHNFLISETGNGNISRQETVSMIPPLLLDIQPSDKVLDMCAA 187

Query: 252 PGGKTAQLIV----------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---- 297
           PG KTAQLI               + A DV   R   L     RL+     I   D    
Sbjct: 188 PGSKTAQLIEALYSGSTSSVPDGLIMANDVHNARCYMLVHQAKRLNSANVVITNHDATVL 247

Query: 298 -----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                  +      FD +L DAPCS  GT+R++ D+       +       Q ++L +G+
Sbjct: 248 PVMNLDENGDSMLKFDKILCDAPCSGDGTLRKNADIWTKWSPGNANNLHGIQFRILKRGL 307

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK------------- 399
             +  GG +V+S CS +  ++E VVQ+++  +   V ++  +                  
Sbjct: 308 ELLNVGGRLVYSTCSFNPVENEAVVQRMMTEAQGSVVIINAHDKLPGLKIVNGLSKWIVV 367

Query: 400 ----SIDMAMALSPEGW-IRITPDMLE------------KIDGVSSGMDGFFAVALRRLI 442
                +       PE W  +I P M              +I        GFF   + ++ 
Sbjct: 368 SKDLDVYKTFEEVPEKWNTQIRPQMFPPKEDLYNLDKCIRILPHHQDTGGFFVTLMEKI- 426

Query: 443 QP 444
           +P
Sbjct: 427 KP 428


>gi|257096818|sp|A6WP46|RSMF_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 486

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 21/257 (8%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 74  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQYVLDLASAPGSKTTQ 133

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 134 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 194 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 254 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 302

Query: 434 FAVALRRLI-----QPK 445
           F   L +       QP+
Sbjct: 303 FVAKLTKTASVPRLQPE 319


>gi|153000967|ref|YP_001366648.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
           OS185]
 gi|151365585|gb|ABS08585.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella baltica
           OS185]
          Length = 505

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 21/257 (8%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 93  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQYVLDLASAPGSKTTQ 152

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 213 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 321

Query: 434 FAVALRRLI-----QPK 445
           F   L +       QP+
Sbjct: 322 FVAKLTKTASVPRLQPE 338


>gi|217973073|ref|YP_002357824.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
           OS223]
 gi|217498208|gb|ACK46401.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS223]
          Length = 505

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 21/257 (8%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 93  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 152

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 213 APCGGEGTVRKDVDALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 321

Query: 434 FAVALRRLI-----QPK 445
           F   L +       QP+
Sbjct: 322 FVAKLTKTASVPRLQPE 338


>gi|257096816|sp|B8E968|RSMF_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 486

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 21/257 (8%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 74  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 133

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 134 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 194 APCGGEGTVRKDVDALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 254 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 302

Query: 434 FAVALRRLI-----QPK 445
           F   L +       QP+
Sbjct: 303 FVAKLTKTASVPRLQPE 319


>gi|15618584|ref|NP_224870.1| RNA methyltransferase [Chlamydophila pneumoniae CWL029]
 gi|15836206|ref|NP_300730.1| RNA methyltransferase [Chlamydophila pneumoniae J138]
 gi|16752367|ref|NP_444625.1| Nol1/Nop2/Sun family protein [Chlamydophila pneumoniae AR39]
 gi|33242032|ref|NP_876973.1| fmu methyltransferase [Chlamydophila pneumoniae TW-183]
 gi|4376975|gb|AAD18813.1| RNA Methyltransferase [Chlamydophila pneumoniae CWL029]
 gi|8163359|gb|AAF73625.1| Nol1/Nop2/Sun family protein [Chlamydophila pneumoniae AR39]
 gi|8979046|dbj|BAA98881.1| RNA methyltransferase [Chlamydophila pneumoniae J138]
 gi|33236542|gb|AAP98630.1| fmu methyltransferase [Chlamydophila pneumoniae TW-183]
          Length = 364

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 137/436 (31%), Gaps = 85/436 (19%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  LL  +    IS    +   +  +    L  +D+  ++ I+   LR    ++ ++   
Sbjct: 9   AYQLLKQLHTSAISEADRVSYYFKQNR--SLGSKDRQWIQNIIFNILRHRRLLETLI--- 63

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           L S       +L                     V+  V                      
Sbjct: 64  LDSGEQVTPEALVA------------------KVNEGV---------------------- 83

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
           +                I +     L   YG+E+   I+   ++   I + V  D  +  
Sbjct: 84  LENLDSYSAIPWPVRYSISDDLAHFLVQDYGEEQAEEIAKIWLTEAPITIRVNTDKISVK 143

Query: 191 HKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
                +  P+    L E         + S   F  G + +QD ++    Q     +   V
Sbjct: 144 ELQEKLEYPSSPGELPEALHFSKRHPLQSTEAFRRGFFEIQDENSQRISQGISLTDKDIV 203

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           LD CA  GGK+         V   D  K  L+  +  L R       +   D        
Sbjct: 204 LDFCAGAGGKSLIFAQKAKHVVINDSRKAILQTAKHRLLRAGARNFSL--ADQLRLGSFS 261

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
           +   V+VDAPCS TG  RRHP+  W      ++     Q+ +L Q  ++V P G +V+  
Sbjct: 262 V---VIVDAPCSGTGVFRRHPEHKWQFSKKLLLNYVRVQKSILKQASAYVGPRGRLVYIT 318

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CSL K+++E  V  +     +  + V                             + +  
Sbjct: 319 CSLLKEENEAHVAYM---HSLGWKEV---------------------------HRKTLPL 348

Query: 426 VSSGMDGFFAVALRRL 441
                D FF    +++
Sbjct: 349 QVGKGDAFFTSHFQKI 364


>gi|253573330|ref|ZP_04850673.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846858|gb|EES74863.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 319

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 33/248 (13%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
              G     E        P  A G++++Q+ SA   V+L       +VLDL AAPGGKT 
Sbjct: 71  PWCGTGYYYEESTRPGKHPYHAAGLYYIQEPSAMSAVELLDPQPGQTVLDLAAAPGGKTT 130

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312
           Q    +     + + ++  +R   L  N++RL +    + +        +    FD +++
Sbjct: 131 QIAAKMAGQGLLISNEIHPQRARILAENVERLGIRNAVVTQAAPPALSARFPLAFDRIML 190

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  G  R+ PD +     + +   A  Q  +L   ++ +KPGG + +S C+ ++ +
Sbjct: 191 DAPCSGEGMFRKDPDAISEWSPEAVELCAARQWDILQDAVAMLKPGGRLAYSTCTFNRHE 250

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +E+ + ++L   P  + L+                      RI P   +          G
Sbjct: 251 NEDTIARLLAEYP-FLRLIAEK-------------------RIWPHREQGE--------G 282

Query: 433 FFAVALRR 440
            +   + R
Sbjct: 283 HYVALIER 290


>gi|332885656|gb|EGK05902.1| hypothetical protein HMPREF9456_02166 [Dysgonomonas mossii DSM
           22836]
          Length = 455

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 118/302 (39%), Gaps = 21/302 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F  R ++  G + V  +                  E     L+ V+    G  L
Sbjct: 1   MNLPVDFITRTKSLLGDDWVAFVEALNSESPTSIRINNHKAEKLF--LDKVLWTESGYYL 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIP---VQLFGTLNNLSVLDLCAAPGGK---TAQL 259
            + P      P F  G ++VQ+AS+       + +    N+ +LDLCAAPGGK    A +
Sbjct: 59  PQRPSFTFD-PLFHAGCYYVQEASSMFIEQAFRQYVVGGNVRILDLCAAPGGKSTLIADV 117

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318
           +   + + + +V + R   L  N+ +       +   D       +  FD +LVDAPCS 
Sbjct: 118 MGESSLLVSNEVIRTRANILAENITKWGNPNTVVTNNDPQQIGKLQGFFDFILVDAPCSG 177

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+          D++      Q+++L    S +K  G++++S C+ +  ++EE VQ
Sbjct: 178 EGMFRKDEGATSEWSIDNVKLCKERQQRILADIWSALKTEGLLLYSTCTYNVDENEENVQ 237

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +       V  + +   +  S  +  +       R  P   +          GFF   L
Sbjct: 238 WICEELGAEVLPIDVKEGWGVSPSLRDSFPA---YRFFPHKTKGE--------GFFCALL 286

Query: 439 RR 440
           R+
Sbjct: 287 RK 288


>gi|307244060|ref|ZP_07526179.1| NOL1/NOP2/sun family protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492584|gb|EFM64618.1| NOL1/NOP2/sun family protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 497

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 108/301 (35%), Gaps = 47/301 (15%)

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDL------TVKFDIETWAHKLNAVMLPTGGIR 204
              +   + Y  E+  AI    +              + FD +  +              
Sbjct: 46  DEYQDFLDSYQDEKTSAIRVNNLKMPIERFKDLGLFNIDFDRDNISWAKEG--------Y 97

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
                 +    P    G +++Q+ SA   V          VLDLCAAPGGK+      + 
Sbjct: 98  YISGDVNPGKNPLHDAGAYYIQEPSAMSVVGQTPINEGDRVLDLCAAPGGKSTYILSKLN 157

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSST 319
               + + +++  R+  L  NL+R       I   D+       K  FD + +DAPCS  
Sbjct: 158 HRGLLVSNEINPNRIRALGENLERFGAVNSIITNSDSSSLLTFFKGFFDKIFIDAPCSGQ 217

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+    +     D + + A  QR+++      ++ GG++++S C+  +Q++E++++ 
Sbjct: 218 GMFRKDAFAIEDWSQDKVDECAGIQRQIIRDAYEMLRNGGMLIYSTCTFTRQENEDIIEA 277

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            L   P    LV ++                   RI P              G F   + 
Sbjct: 278 FLGDYPT-ASLVDMD-------------------RIWPHKDRGE--------GHFCARIL 309

Query: 440 R 440
           +
Sbjct: 310 K 310


>gi|298530694|ref|ZP_07018096.1| tRNA (cytosine-5-)-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510068|gb|EFI33972.1| tRNA (cytosine-5-)-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 422

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 12/251 (4%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
           V    G    +  P  + +      G  ++QD S+ +P  L       +VLD+CAAPGGK
Sbjct: 39  VPEVPGAWVEENGPFGLGASLAGYFGFLYIQDLSSMLPPILLAPGPGQAVLDMCAAPGGK 98

Query: 256 TAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312
           + QL      G  V A + S+ RL  LR NL+RL+             +    +FD +LV
Sbjct: 99  SVQLAEMTGEGGLVIANEPSRDRLGTLRANLERLNAANVVTTNYAGQAFPQGPVFDCILV 158

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           DAPCS  GT+ ++P V      +++      QRKLL +    + PGG +V+S C+ ++++
Sbjct: 159 DAPCSGWGTVGKNPAVTRVWKKENLHTLIEVQRKLLEKAYKMLAPGGRLVYSTCTTNEEE 218

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           ++  V  +L+ + +            ++  M   L   G     P ML  + G  SG   
Sbjct: 219 NQNQVHWILKRTSLA--------GSPRAQHMQSELGLPGLESTAPGMLV-MKGDESGSQS 269

Query: 433 FFAVALRRLIQ 443
           FF  AL +  +
Sbjct: 270 FFMAALEKPGK 280


>gi|301776092|ref|XP_002923467.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like, partial
           [Ailuropoda melanoleuca]
          Length = 762

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 146 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 205

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 206 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLKIDVNGRKEILFYDRILCDVPCSGDGTM 265

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 266 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 325

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S          I     ++ +G               +I P M     
Sbjct: 326 KSEGALELADVSSELPGLKWMPGITHWKVMTKDGQWFTEWEGVPHSRHTQIRPTMFPPKD 385

Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441
                        ++        GFF   L + 
Sbjct: 386 PEKLQAMHLERCLRVLPHHQNTGGFFVAVLVKK 418


>gi|162605886|ref|XP_001713458.1| nucleolar protein [Guillardia theta]
 gi|13794390|gb|AAK39767.1|AF083031_124 nucleolar protein [Guillardia theta]
          Length = 358

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267
           S+ S   +  G + +Q  S+ +PV       N  +LDL AAPG K    +Q + +   + 
Sbjct: 122 SLGSTTEYLCGYYTLQSISSLLPVISLDPTTNEKILDLAAAPGNKSTLISQFMRNNGILI 181

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHP 326
           + D+ K R++ L  ++ RL++    I   D          F  VL+DAPCS +G +   P
Sbjct: 182 SNDIKKLRIKSLVNSIHRLNVDNSIIANYDGILIPFIMKGFHRVLLDAPCSGSGLVSHDP 241

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVK---PGG-IVVFSNCSLDKQDSEEVVQKVLR 382
            +    +   ++ ++  Q++LL+  I       P G I+V+S CS+  +++E V+Q VL 
Sbjct: 242 LIK-KINKHIVILNSNLQKRLLIAAIDACNGISPMGNIIVYSTCSISVEENECVIQYVLS 300

Query: 383 SSPIPVELVPLNSAYWKSI---DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
              + +    ++          ++    S +   R  P +          +DGFF   LR
Sbjct: 301 KRNVEIISTGIDFGLPGLTTYKNIRFDESMKKCKRFYPHV--------HNVDGFFICKLR 352

Query: 440 RL 441
           + 
Sbjct: 353 KK 354


>gi|300706745|ref|XP_002995614.1| hypothetical protein NCER_101435 [Nosema ceranae BRL01]
 gi|239604788|gb|EEQ81943.1| hypothetical protein NCER_101435 [Nosema ceranae BRL01]
          Length = 474

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 132/307 (42%), Gaps = 17/307 (5%)

Query: 152 FKERLENFYGKERVLAISDACISPLY-IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210
           F + L NF   E    I+         + +T                L +     +++ +
Sbjct: 13  FYKPLLNFTNDEWTRFINTMESRLPSALRITNTKFKNKIEIFFLKEKLISKNKFFRDVYD 72

Query: 211 SIVSLPGFAEG--------VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262
           ++       +             Q+  + +PV L G   N SVLD+CAAPG KT QL+  
Sbjct: 73  TVHKGTSHKDFIINQTSVGHIQKQEIVSMLPVLLMGLKENHSVLDMCAAPGSKTKQLLEK 132

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGT 321
            + V A D S +RL  L     ++   +  +++ DA      K  FD VL D PCS  GT
Sbjct: 133 ASLVVANDCSSKRLNILISETCKIPHASYLVVKHDASALPVFKTDFDRVLCDVPCSGDGT 192

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R++P +L   +       +  Q ++L   I+FVK  G++++S CSL+  ++E+VV K +
Sbjct: 193 ARKNPQILNNWNIGSAANLSNLQYRILKHAINFVKSDGLIIYSTCSLNPIENEQVVLKAI 252

Query: 382 RSSPIPV----ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE---KIDGVSSGMDGFF 434
               + +    + +  N +    +   + +  E  +R   + L+   +I    +   GFF
Sbjct: 253 MQDDLEIVDLRKFIDHNISKDFVMRDGIIIKDENGLRTNFEDLKKCIRIYPHDNDTGGFF 312

Query: 435 AVALRRL 441
            V L++ 
Sbjct: 313 IVGLKKK 319


>gi|74003045|ref|XP_856448.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein isoform
           3 [Canis familiaris]
          Length = 775

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 160 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 219

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 220 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVNGRKEILFYDRILCDVPCSGDGTM 279

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 280 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 339

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S          I     ++ +G               +I P M     
Sbjct: 340 KSEGALELADVSSELPGLKWMPGITHWKVMTKDGQWFAEWEDVPHSRHTQIRPTMFPPKD 399

Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441
                        +I        GFF   L + 
Sbjct: 400 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKK 432


>gi|193582508|ref|XP_001950228.1| PREDICTED: putative methyltransferase NSUN6-like [Acyrthosiphon
           pisum]
          Length = 447

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 29/255 (11%)

Query: 210 ESIVSLPGF---AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           +    +P F    E        S      L    NNL VLD+CAAPG KT  +   + + 
Sbjct: 201 DPATGIPSFTLPNEYGMLQNLPSVVTGHALDVNENNLKVLDMCAAPGNKTTHIAILMNNK 260

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-------------AFDYCPKKLFDAV 310
             + A+D SK +L K+        +    I   D                    + FD V
Sbjct: 261 GSIDAVDKSKTKLNKVELRCKHFGIQNVKIHHFDSLVSVDLNNINNSDRPPFKNESFDRV 320

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS+ G   + P +    D + + +    QRKLL+  I+ VKPGGI+V+S C++  
Sbjct: 321 LLDAPCSNLG---QRPLLKIEVDKNVLKRFPALQRKLLINAINLVKPGGILVYSTCTITL 377

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           +++E  V  VL   P    +   +      I     L+ +       + + +    ++  
Sbjct: 378 EENEHNVAWVLEKFPQMELIAINSEIGSPGIATQDGLNKDLC-----EFVRRFGPENAEE 432

Query: 431 D--GFFAVALRRLIQ 443
           D  GFF    ++ +Q
Sbjct: 433 DSIGFFISKFQKRVQ 447


>gi|74003041|ref|XP_535800.2| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein isoform
           1 [Canis familiaris]
          Length = 780

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 160 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 219

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 220 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVNGRKEILFYDRILCDVPCSGDGTM 279

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 280 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 339

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S          I     ++ +G               +I P M     
Sbjct: 340 KSEGALELADVSSELPGLKWMPGITHWKVMTKDGQWFAEWEDVPHSRHTQIRPTMFPPKD 399

Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441
                        +I        GFF   L + 
Sbjct: 400 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKK 432


>gi|269302458|gb|ACZ32558.1| NOL1/NOP2/Sun family protein [Chlamydophila pneumoniae LPCoLN]
          Length = 364

 Score =  120 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 137/436 (31%), Gaps = 85/436 (19%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  LL  +    IS    +   +  +    L  +D+  ++ I+   LR    ++ ++   
Sbjct: 9   AYQLLKQLHTSAISEADRVSYYFKQNR--SLGSKDRQWIQNIIFNILRHRRLLETLI--- 63

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           L S       +L                     V+  V                      
Sbjct: 64  LDSGEQVTPEALVA------------------KVNEGV---------------------- 83

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
           +                I +     L   YG+E+   I+   ++   I + V  D  +  
Sbjct: 84  LENLDSYSAIPWPVRYSISDDLAHFLVQDYGEEQAEEIAKIWLTEAPITIRVNTDKISVK 143

Query: 191 HKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
                +  P+    L E         + S   F  G + +QD ++    Q     +   V
Sbjct: 144 ELQEKLEYPSCPGELPEALHFSKRHPLQSTEAFRRGFFEIQDENSQRISQGISLTDKDIV 203

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           LD CA  GGK+         V   D  K  L+  +  L R       +   D        
Sbjct: 204 LDFCAGAGGKSLIFAQKAKHVVINDSRKAILQTAKHRLLRAGARNFSL--ADQLRLGSFS 261

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
           +   V+VDAPCS TG  RRHP+  W      ++     Q+ +L Q  ++V P G +V+  
Sbjct: 262 V---VIVDAPCSGTGVFRRHPEHKWQFSKKLLLNYVRVQKSILKQASAYVGPRGRLVYIT 318

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CSL K+++E  V  +     +  + V                             + +  
Sbjct: 319 CSLLKEENEAHVAYM---HSLGWKEV---------------------------HRKTLPL 348

Query: 426 VSSGMDGFFAVALRRL 441
                D FF    +++
Sbjct: 349 QVGKGDAFFTSHFQKI 364


>gi|198434760|ref|XP_002132117.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 2 [Ciona
           intestinalis]
          Length = 702

 Score =  120 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 130/389 (33%), Gaps = 84/389 (21%)

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP------------ 175
            ++            A    +P  F+      + K+ +  +                   
Sbjct: 36  EQKCFDISQFEEFLNAMKQPLPAVFRITGYKRHAKQLLKNMKRNHFEDLTELKIGDDTVK 95

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
             + L+   D   W   LN   +             I        G    Q+A + IP  
Sbjct: 96  PPVPLSWYPDDLAWQTDLNRGQIRKVPQLQNFHTFLIAESES---GHITRQEAVSMIPPL 152

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAK----------VTALDVSKRRLEKLRCNLDR 285
           L    ++  VLD+CAAPG KTAQ++    +            A D   +R   L   + R
Sbjct: 153 LLDVHSHHKVLDMCAAPGSKTAQIVELLHRDENNSIPEGICVANDKDNKRCYMLVHQIGR 212

Query: 286 LHLYAEDIIEMDAFDYCPKK-----------LFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           LH  +  I+  DA ++                +D +L D PCS  GT+R++ DV    + 
Sbjct: 213 LHSPSTLIVNHDASNFPEIFIKNDDGKDILLRYDRILCDVPCSGDGTMRKNTDVWVKWNQ 272

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
            + +     Q ++LL+G+  +  GG +V+S CSL+  + E VV   +      VELV ++
Sbjct: 273 ANAIYLHRTQYRILLRGLELLASGGQLVYSTCSLNPIEDEAVVAAAIHHCGGAVELVSVS 332

Query: 395 SA---------------------------------------YWKSIDMAMALSPEGWIRI 415
                                                         D+  A+  E  +R+
Sbjct: 333 LPGLKWSPGVSSWRVMDSDMNWYDTHDQVPEKKKNISYSMFPPGGQDVMEAMHLERCMRL 392

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            P   +          GFF   LR+  +P
Sbjct: 393 LPHQQD--------TGGFFVAVLRKK-KP 412


>gi|319947271|ref|ZP_08021504.1| NOL1/NOP2/sun family protein [Streptococcus australis ATCC 700641]
 gi|319746513|gb|EFV98773.1| NOL1/NOP2/sun family protein [Streptococcus australis ATCC 700641]
          Length = 434

 Score =  120 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 20/254 (7%)

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
           A ++       G         S         G+ + Q+ +A +  Q+      + VLDL 
Sbjct: 41  AEQIRGDEPIPGMPWSYYGKVS-GKSIAHVTGLVYSQEPAAQMVAQVAHPKPGMKVLDLA 99

Query: 250 AAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPK 304
           AAPGGKT      + +   + + ++ K R + L  N++R       +     D       
Sbjct: 100 AAPGGKTTHLLSYLDNQGLLVSNEIHKGRSKILVENVERFGARNVVVTNESADRLAKVFP 159

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             FD +++DAPCS  G  R+ PD +     D   + A  QR++L   I  + PGG +V+S
Sbjct: 160 AYFDLIVLDAPCSGEGMFRKQPDAMDYWHPDYPAQCAGLQREILTDAIKMLAPGGQLVYS 219

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            C+   +++EE+V        +  E         K   M   +      R+ P   +   
Sbjct: 220 TCTWAPEENEEIVSW------LLEEYELELLPIEKINGMVEGIGYPETARMYPHRFKGEG 273

Query: 425 GVSSGMDGFFAVAL 438
                    F    
Sbjct: 274 Q--------FVAKF 279


>gi|254442805|ref|ZP_05056281.1| NOL1/NOP2/sun family, putative [Verrucomicrobiae bacterium DG1235]
 gi|198257113|gb|EDY81421.1| NOL1/NOP2/sun family, putative [Verrucomicrobiae bacterium DG1235]
          Length = 335

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 11/249 (4%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
           A     P+W   R     G E   A      S   +    + + +          L    
Sbjct: 56  AWRYSHPQWLVSRWLEQMGLEATRAFLRWNQSEAGVFARWQGEPDVLPEL---TPLEERP 112

Query: 203 IRLKELPESIVSLPGFAE--GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
                   +   +  + E   ++    A++  P  L  ++     LDLCAAPGGK+  + 
Sbjct: 113 GFFSLESGAWEKISSYIEAGRLYVQNPAASIAPRLLVESVRVGRFLDLCAAPGGKSLLME 172

Query: 261 VSG----AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314
                   ++ ++D++  R +K+  N +R        +  D F+   +    FD VL+DA
Sbjct: 173 KLAGAGVDEIVSVDLAGPRYQKMVGNFERYEAKRIKPLAADVFELSAESRGLFDGVLLDA 232

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS++G ++   D  W +  + +      Q KLL      VKPGG +V+S CS+D +++ 
Sbjct: 233 PCSNSGVLQHKIDARWRQTPESLRSIVSLQGKLLAAASKLVKPGGSLVYSTCSIDDEENA 292

Query: 375 EVVQKVLRS 383
            VV   L+S
Sbjct: 293 GVVDAFLQS 301


>gi|328787657|ref|XP_395050.3| PREDICTED: tRNA (cytosine-5-)-methyltransferase CG6133-like [Apis
           mellifera]
          Length = 740

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 131/410 (31%), Gaps = 74/410 (18%)

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
           Y D+           + ++      +   +N++ + +         ++   +++     +
Sbjct: 35  YADIIRENKDFENYYKTQKIVPEEQWDSFINTMRKNLPVAFRITGSKVEAKALMETIKGD 94

Query: 155 RLENFYGKERVLAISDACISPLYID-LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
             +            +   +   +  L    D   W  +L    +       K     IV
Sbjct: 95  FFKEILNMHMEDDSKNNEETKDILHCLPFYPDGLAWQLQLTRKDIRRSETYFKLHNFLIV 154

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------- 264
                  G    Q+  + +P  +     +  VLD+CAAPG KTAQLI             
Sbjct: 155 ETES---GNISRQEVVSMVPPLVLDVKPSHKVLDMCAAPGSKTAQLIEMIHTEEGNSLPE 211

Query: 265 -KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLV 312
             V A D+   R   L     RL+     I   DA                   FD +L 
Sbjct: 212 GFVIANDLDNNRCYMLVHQSKRLNSPIVLITNHDATILPNFTTTKPDGTKELLKFDRILA 271

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  GT+R++PD+       +       Q +++ +G+  +  GG +V+S CSL+  +
Sbjct: 272 DVPCSGDGTMRKNPDIWCKWSPANGNNLHGIQFRIVRRGLELLTVGGKMVYSTCSLNPIE 331

Query: 373 SEEVVQKVLRSSPIPVELVPL--------------------------------------- 393
           +E V+ ++L  +   V+LV                                         
Sbjct: 332 NEAVLHRILVETQDSVQLVDCRHLVPGLVCDPGISHWLPASKDLQYYESWEDVPEQWQTQ 391

Query: 394 --NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                +    + A     E  +RI P   +          GFF   L ++
Sbjct: 392 VRPKMFPPKPEDAAKFHFERCMRILPHHQD--------TGGFFVAVLEKV 433


>gi|63054645|ref|NP_594695.2| tRNA (cytosine-5-)-methyltransferase (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|30913511|sp|Q9HGQ2|NCL1_SCHPO RecName: Full=tRNA (cytosine-5-)-methyltransferase ncl1
 gi|159884024|emb|CAC05734.2| tRNA (cytosine-5-)-methyltransferase (predicted)
           [Schizosaccharomyces pombe]
          Length = 654

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 58/280 (20%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK------------- 265
             G    Q++ + +P  L    ++  VLD+CAAPG KTAQL+ +  K             
Sbjct: 121 EAGDINRQESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPS 180

Query: 266 --VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------LFDAVLVD 313
             V A D   +R   L   + RL+     I+  DA                  FD +L D
Sbjct: 181 GIVIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFHLSSPDGKKFLKFDRILAD 240

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  GT R++  +         +     Q K+L++G+  ++ GG +V+S CSL+  ++
Sbjct: 241 VPCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIEN 300

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYW---KSIDMAMALSPEGWIRITP------------- 417
           E VV  VL ++   V LV ++S      +S  +   +  +  + I P             
Sbjct: 301 EAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNWVVCDSDLNIYPSFDTLPKELYEKM 360

Query: 418 -----------------DMLEKIDGVSSGMDGFFAVALRR 440
                                +I        GFF   L +
Sbjct: 361 PPTLWPLPKKELAELNIQNCLRIYPHFQNTGGFFVAVLEK 400


>gi|281354435|gb|EFB30019.1| hypothetical protein PANDA_012595 [Ailuropoda melanoleuca]
          Length = 728

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 126 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 185

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 186 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLKIDVNGRKEILFYDRILCDVPCSGDGTM 245

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 246 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 305

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S          I     ++ +G               +I P M     
Sbjct: 306 KSEGALELADVSSELPGLKWMPGITHWKVMTKDGQWFTEWEGVPHSRHTQIRPTMFPPKD 365

Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441
                        ++        GFF   L + 
Sbjct: 366 PEKLQAMHLERCLRVLPHHQNTGGFFVAVLVKK 398


>gi|315222698|ref|ZP_07864587.1| NOL1/NOP2/sun family protein [Streptococcus anginosus F0211]
 gi|315188384|gb|EFU22110.1| NOL1/NOP2/sun family protein [Streptococcus anginosus F0211]
          Length = 434

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 115/299 (38%), Gaps = 24/299 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
              P+ FKE+  N  G E   +              V    E        +     G   
Sbjct: 1   MHFPKGFKEKYYNLLG-EEAPSFFLTFDEEPVSAFRVNPLKEQQKTFPKPIPDTNWGHYG 59

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262
           K   +SI  + G    + + Q+ +A +  Q      N+ VLDL AAPGGK+      + +
Sbjct: 60  KVSGKSIEHITG----LVYSQEPAAQMVAQAAAPQQNMKVLDLAAAPGGKSTHLLSYLNN 115

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320
              + + +++ +R + L  N++R       +            +  FD +++DAPCS  G
Sbjct: 116 TGILVSNEINPKRSKVLVENIERFGARNIVVTNESAGRLSQIFQGYFDMIVLDAPCSGEG 175

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+ P+           + A  QR++L   +  +  GG +++S C+   +++EE+V  +
Sbjct: 176 MFRKQPEATEYWSETYPAQCAQLQREILADALKMLTTGGELIYSTCTWAPEENEEIVDWL 235

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           L +    +ELV ++        +  + +     R+ P   +            F    R
Sbjct: 236 LENY--SLELVEISKINGMVAGIHFSETA----RMYPHRFKGEGQ--------FVAKFR 280


>gi|300214684|gb|ADJ79100.1| Putative 23S ribosomal RNA m(5)C methyltransferase [Lactobacillus
           salivarius CECT 5713]
          Length = 357

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 15/201 (7%)

Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFD 300
           +DLCAAPGGK+ Q    + +   + + +++ +R + L  N++R+      I     D   
Sbjct: 1   MDLCAAPGGKSTQLAEQLNNQGLLVSNEINTKRAKILAENMERIGAKNVIITNESPDNLA 60

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              K  FD ++VDAPCS  G  R+    +     D   + A  Q+ +L + +  +K GG 
Sbjct: 61  KVFKGYFDKIVVDAPCSGEGMFRKDHSAVKYWHKDYPAECAHRQKLILEEAMKMLKTGGE 120

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPD 418
           +V+S C+   ++ E++V  +L +  + +E +                + +    IR+ P 
Sbjct: 121 LVYSTCTFAPEEDEQIVAWLLENYDLTLEPITKYDGMDSGRPEFADGNKDLAKTIRLMPH 180

Query: 419 MLEKIDGVSSGMDGFFAVALR 439
             E            F   L+
Sbjct: 181 HFEGEGQ--------FLAKLK 193


>gi|45358689|ref|NP_988246.1| putative proliferating-cell nucleolar antigen [Methanococcus
           maripaludis S2]
 gi|45047555|emb|CAF30682.1| putative proliferating-cell nucleolar antigen [Methanococcus
           maripaludis S2]
          Length = 292

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 119/263 (45%), Gaps = 26/263 (9%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTL 240
           E    +L    +      L  +   +       S P +  G +++Q  S+ IP       
Sbjct: 44  EELKTRLEEKGVNLEDTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSISSIIPSITLNPS 103

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
            +  VLD+CAAPGGKT  L   + +   + A++++K RL+ LR N++R+      +I  +
Sbjct: 104 KDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTN 163

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           A +   K  FD +L+DAPC+       +      +   DI+  A  Q +L    I  +K 
Sbjct: 164 AVNIDKKLRFDKILLDAPCTGNEVKDSNRV----KTKRDILFCAKRQVELFRTAIEVLKD 219

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S CS + ++ E++V+ +L+++   +EL+ L    +  I+M       G +++ P
Sbjct: 220 GGELVYSTCSPEIEEDEDIVRYILKTNKN-MELIELTVDDFPGINMIEGEVK-GTLKVIP 277

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                          FF    R+
Sbjct: 278 PNEP-----------FFIAKFRK 289


>gi|311274134|ref|XP_003134206.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like, partial
           [Sus scrofa]
          Length = 710

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 100/273 (36%), Gaps = 54/273 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 73  ISRQEAVSMIPPLLLNAQPHHKILDMCAAPGSKTTQLIEMLHADMTVPFPEGFVIANDVD 132

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 133 NKRCYLLVHQAKRLSSPCIMVVNHDAACLPRLQMDVNGRKEVLFYDRILCDVPCSGDGTM 192

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 193 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 252

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S          +     ++ +G               +I P M     
Sbjct: 253 KSEGALELADVSSELPGLKWMPGLTQWKVMTRDGQWFPAWDDVPQGRHTQIRPTMFPPKD 312

Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441
                        +I        GFF   L + 
Sbjct: 313 PESLQAMHLERCLRILPHHQNTGGFFVAVLVKK 345


>gi|322498344|emb|CBZ33418.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 848

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 135/371 (36%), Gaps = 46/371 (12%)

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           +++  +   A   N   + V  E    +Q ++     P     RL +         I+  
Sbjct: 182 EKNGSHPEIASAGNGSRKNVDSEWSAFVQSMST----PLPMTLRLHHSERALEA--IATR 235

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
            ++   I   V+  +  +                 +  E +      A      Q+  ++
Sbjct: 236 MLTTPDIAAVVRP-VAAFPSTSGLYSCSNSDYHSHKRVEYVCRT-LHAASAVSFQEVVSA 293

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDVSK-RRLEKL 279
           IPV +       +V+DLCAAPG KT               V    + A +  + +  + L
Sbjct: 294 IPVFVLDVQPQHTVVDLCAAPGSKTVQALDTMLSGGWSADVCRGVLIANEKDRVKATQTL 353

Query: 280 RCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVLVDAPCSSTGTIRRH 325
              L R H         D   +                +  FD ++ D PCS  GTIR+ 
Sbjct: 354 PARLKRYHAPNVMTTRCDGVQWPRLYLDDPTNSSSELQELRFDRIICDVPCSGDGTIRKE 413

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
             +  T     +      QR LL +G+  +  GGI+V+S CS+D ++ EEVV   L +  
Sbjct: 414 RSIATTWSASYVKSLVPTQRALLCRGLDLLATGGILVYSTCSMDPKEDEEVVCVGLEAFG 473

Query: 386 IPVELVPLNSAY------WKSIDMAMALSPEGWIR-ITP-----DMLEKIDGVSSGMDGF 433
             VEL+ +N+          S    ++ + EG    + P     + + +I        GF
Sbjct: 474 DSVELIDVNAVLQQKGFHLHSAGGILSPNVEGMQHPVLPPTYDGNKVLRILPHRDDTGGF 533

Query: 434 FAVALRRLIQP 444
           F  A R++ QP
Sbjct: 534 FVAAFRKVKQP 544


>gi|325263990|ref|ZP_08130723.1| NOL1/NOP2/sun family protein [Clostridium sp. D5]
 gi|324031028|gb|EGB92310.1| NOL1/NOP2/sun family protein [Clostridium sp. D5]
          Length = 466

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 17/262 (6%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L  +   + G             P +  G++++Q+ SA  P           VLD+CAAP
Sbjct: 54  LEPIPWISNGFYYDGENVQPAKHPYYFAGLYYLQEPSAMTPASRLPVEPGDRVLDVCAAP 113

Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLF 307
           GGK  +    +     + A D+S  R + L  NL+   +    +   E         + F
Sbjct: 114 GGKATELGARLQGEGVLIANDISNSRAKGLLKNLELFGIGNMLVLSEEPGKLIEYFSEYF 173

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L+DAPCS  G  R+   ++   +       +  QR ++ Q  + +KPGG++++S C+
Sbjct: 174 DKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFSRLQRSIITQAAAMLKPGGMLLYSTCT 233

Query: 368 LDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
            D  ++E+ ++ +    P      +E           +           +RI P  ++  
Sbjct: 234 FDASENEQTIEYLRSQYPEFTICPIEPYDGFVQGMPELTEGRDPGLAETVRIFPHRMQGE 293

Query: 424 DGVSSGMDGFFAVALRRLIQPK 445
                   G +   L++   P+
Sbjct: 294 --------GHYLALLKKGCAPE 307


>gi|157375779|ref|YP_001474379.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sediminis
           HAW-EB3]
 gi|254766868|sp|A8FWM8|RSMF_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|157318153|gb|ABV37251.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sediminis
           HAW-EB3]
          Length = 478

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 20/253 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG----TLNNLSVLDLCAAP 252
               G     +    + +     +G++++Q+AS+ +P              ++LD+ +AP
Sbjct: 65  WCQDGFWISLDSDVQLGNTVEHLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDMASAP 124

Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLF 307
           G KT Q   ++ +   + A + S  R++ L  N+ R+ +    +   DA  +       F
Sbjct: 125 GSKTTQIAAMMDNSGLLIANEYSSSRVKVLHANVLRMGVSNTALTHFDARVFGEYLYDQF 184

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           DA+L+DAPCS  GTIR+ P  L      +    A  Q+ LL      +K GG +V+S C+
Sbjct: 185 DAILLDAPCSGEGTIRKDPLALNNWGLAENSAIAETQKALLESAFLALKTGGSLVYSTCA 244

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L K ++++V + +  + P  VE   L + +    D   A + EG++ + P + +      
Sbjct: 245 LSKLENQDVCEHLRSTFPEAVEFESLATLFP---DADKACTDEGFLHVWPQIYDSE---- 297

Query: 428 SGMDGFFAVALRR 440
               GFF   + +
Sbjct: 298 ----GFFIAKITK 306


>gi|149743533|ref|XP_001497025.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Equus caballus]
          Length = 469

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 43/270 (15%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F +      ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDKVLPSYIFLQNLPSALATHVLDPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++EK++ N   L L +      D                     + FD 
Sbjct: 260 GEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKNTEGEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  +    ++      QRKL    +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMACSWTLKEVTSYQPLQRKLFTVAVKLLKPGGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   L + P  ++L P          M   LS E   ++       +    + 
Sbjct: 377 LAENEEQVAWALATFP-DLQLQPQEPRIGGEGMMGAGLSLEQLKQLQRFDPSAVPLQDTD 435

Query: 430 MD-------------------GFFAVALRR 440
           MD                   GFF     +
Sbjct: 436 MDSLRDARIEDMVRLANNDCIGFFIAKFVK 465


>gi|304409045|ref|ZP_07390666.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS183]
 gi|307303048|ref|ZP_07582803.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica BA175]
 gi|304352866|gb|EFM17263.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS183]
 gi|306913408|gb|EFN43830.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica BA175]
          Length = 505

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 93  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 152

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 213 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 321

Query: 434 FAVALRRLI 442
           F   L +  
Sbjct: 322 FVAKLTKTA 330


>gi|157867927|ref|XP_001682517.1| methyltransferase [Leishmania major strain Friedlin]
 gi|68125971|emb|CAJ03980.1| putative methyltransferase [Leishmania major strain Friedlin]
          Length = 849

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 38/265 (14%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKV 266
            A      Q+  ++IPV +       +V+DLCAAPG KT               V    +
Sbjct: 281 HAASAVSFQEVVSAIPVFVLDVQPQHTVVDLCAAPGSKTVQALDTMLSGGWSADVCRGVL 340

Query: 267 TALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVL 311
            A +  + +  + L   L R H         D   +                ++ FD ++
Sbjct: 341 IANEKDRVKATQTLPARLKRYHAPNVMTTRCDGVQWPRLYFNDPTNPSSEPQERRFDRII 400

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GTIR+   +  T     +      QR LL +G+  +  GGI+V+S CS++ +
Sbjct: 401 CDVPCSGDGTIRKECSIATTWSASYVKSLVPTQRALLCRGLDLLATGGILVYSTCSMNPK 460

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWK------SIDMAMALSPEGWIR-ITP-----DM 419
           + EEVV   L +    VEL+ +N+   +      S    ++ + EG    + P     + 
Sbjct: 461 EDEEVVCVGLEAFGDSVELIDVNAVLQEKGFHLHSAGGILSPNVEGMQHPVLPPTYDGNK 520

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQP 444
           + +I        GFF  A R+  QP
Sbjct: 521 VLRILPHRDDTGGFFVAAFRKAKQP 545


>gi|268637929|ref|XP_002649150.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
 gi|256012942|gb|EEU04098.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
          Length = 789

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 108/343 (31%), Gaps = 45/343 (13%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201
            +  S  P       ++   K+      +      ++    +    T    ++ +     
Sbjct: 150 PSPFSWYPNEM--AWKSSIPKKSFKKNPELSKFHHFLVHHNQQGNITRQEAVSMIPPLFL 207

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
            ++       + + PG                        +L V    +    +   + +
Sbjct: 208 DVQSHYNILDMCAAPGSKTTQILEDLHMKHNLENEEIIKRSLKVDGGDSGSSNEKPSIYI 267

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAV 310
               + A DV   R   L     RL   A  +   +A ++                 D +
Sbjct: 268 PKGCIIANDVDTNRCYMLVTQTTRLGSPAIIVTNHEAQNFPLLYSKNSDGSESPIYMDRI 327

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT R++P+V         +     Q K+  +G   +K GG +V+S CS++ 
Sbjct: 328 LCDVPCSGDGTTRKNPEVWKKWTHAGSIGLHQLQIKIATRGCQLLKVGGRMVYSTCSMNP 387

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA-------------------------- 404
            ++E V+ ++++ S   ++LV ++S Y   I                             
Sbjct: 388 VENEAVIAQIIQKSGGSIKLVDVSSQYPSLIRRPGLHSWTVIDKAGNFPTFESQPEDKKY 447

Query: 405 ------MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    +P+  I +  +   ++        GFF   L ++
Sbjct: 448 KLSKTLWPPTPQEAIDMHLEYCMRVYPHLQDTGGFFIAVLEKV 490


>gi|268637927|ref|XP_002649149.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
 gi|256012941|gb|EEU04097.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
          Length = 765

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 108/343 (31%), Gaps = 45/343 (13%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201
            +  S  P       ++   K+      +      ++    +    T    ++ +     
Sbjct: 126 PSPFSWYPNEM--AWKSSIPKKSFKKNPELSKFHHFLVHHNQQGNITRQEAVSMIPPLFL 183

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
            ++       + + PG                        +L V    +    +   + +
Sbjct: 184 DVQSHYNILDMCAAPGSKTTQILEDLHMKHNLENEEIIKRSLKVDGGDSGSSNEKPSIYI 243

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAV 310
               + A DV   R   L     RL   A  +   +A ++                 D +
Sbjct: 244 PKGCIIANDVDTNRCYMLVTQTTRLGSPAIIVTNHEAQNFPLLYSKNSDGSESPIYMDRI 303

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT R++P+V         +     Q K+  +G   +K GG +V+S CS++ 
Sbjct: 304 LCDVPCSGDGTTRKNPEVWKKWTHAGSIGLHQLQIKIATRGCQLLKVGGRMVYSTCSMNP 363

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA-------------------------- 404
            ++E V+ ++++ S   ++LV ++S Y   I                             
Sbjct: 364 VENEAVIAQIIQKSGGSIKLVDVSSQYPSLIRRPGLHSWTVIDKAGNFPTFESQPEDKKY 423

Query: 405 ------MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    +P+  I +  +   ++        GFF   L ++
Sbjct: 424 KLSKTLWPPTPQEAIDMHLEYCMRVYPHLQDTGGFFIAVLEKV 466


>gi|289677564|ref|ZP_06498454.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
           syringae FF5]
          Length = 172

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 268 ALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325
           A+D+  +RL ++R NLDRL L A        +   +   K F  +L+DAPCS+TG IRRH
Sbjct: 4   AVDLEAKRLVRVRENLDRLGLDAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRH 63

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           PD+  TR  DDI   A  Q +LL      ++ GG++V++ CS    ++ +V++  L  + 
Sbjct: 64  PDIKLTRQADDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTS 123

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              EL     A      +  A               ++     G DGF+   L ++ 
Sbjct: 124 GARELDIAGQAGQPPAGIKQA------------HGRQLLAQQGGHDGFYYAKLIKIA 168


>gi|15920908|ref|NP_376577.1| Sun family protein [Sulfolobus tokodaii str. 7]
 gi|15621692|dbj|BAB65686.1| 370aa long hypothetical sun protein [Sulfolobus tokodaii str. 7]
          Length = 370

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 33/301 (10%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVML------PT 200
           +P+W KERL       ++   S       +I +  +K +++     L             
Sbjct: 89  LPQWVKERL----SYIKLDDFSKLFHKKTWIRVNTLKVNVKEAISSLMKKGFELVRDDFD 144

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TA 257
              ++   P  I     F +G   +QD ++   V +        +L++ +APG K     
Sbjct: 145 FLFQVTRFPFRISKTEEFQKGEIVIQDKASVYVVTVLDPKPYERILEVGSAPGMKTSLIQ 204

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           QL  + A V ALD+S++R++  R  ++++ +   ++I  D  +  P K  D +L+DAPCS
Sbjct: 205 QLTNNKAYVIALDISEKRIQVQRELMEKMGVENYELIVADGENL-PIKEVDKILIDAPCS 263

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           ++GTI   P V    + +D++K +  Q+++L +     KP   VV+S CSL  ++ E++V
Sbjct: 264 NSGTINADPSVFLRLNKNDVIKLSRLQKEILREASKLRKP---VVYSTCSLFPEEGEKIV 320

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +         +  +  +  ++  +   + L     +R  P +         G +GFF   
Sbjct: 321 E----KYSDYLVKLTNDPTHYGYMRSKVWLR---VMRFYPHI--------HGTEGFFISK 365

Query: 438 L 438
           L
Sbjct: 366 L 366


>gi|29839833|ref|NP_828939.1| Nol1/Nop2/Sun family protein [Chlamydophila caviae GPIC]
 gi|29834180|gb|AAP04817.1| Nol1/Nop2/Sun family protein [Chlamydophila caviae GPIC]
          Length = 371

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 132/422 (31%), Gaps = 82/422 (19%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
             +     +       R L  +D+  + A +   LR    ++A++               
Sbjct: 19  TPIGEANRVALYFKQHRSLGSKDRQWISARIFAILRHRRLLEALIQQ------------- 65

Query: 83  QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142
                            D   V      AK ++               +   +       
Sbjct: 66  -----------------DNQEVTPETLVAKVEEG-------------VLDDIEKYQDLPW 95

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
                + +   E L   YG+ER   + +  +      + V     +       +  P   
Sbjct: 96  PVRYSVSDDLAECLIEDYGQERAKELCEIFLHEAPCAIRVNTRRTSVEDLQKRLEYPCTP 155

Query: 203 IRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
             +      +    +     F  G++ VQD S+              VLD CA  GGK+ 
Sbjct: 156 GSVPGSLCFDKRYPLQHSAAFHRGLFEVQDESSQKIALGIPISKKDRVLDFCAGAGGKSL 215

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
            L      V   D  K  LE+ +  L R       I E              V+VDAPC+
Sbjct: 216 ILAERAHHVVLHDSRKDILEEAKQRLRRAGARNFSIGEQHLRRNSFS----IVVVDAPCT 271

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
            +G  RRHP+         +   +  QRK+L + + +VKPGG +++  CSL  Q++E+ V
Sbjct: 272 GSGVFRRHPEKKSQFSKKLLTTFSQVQRKILREAMHYVKPGGRLIYITCSLLSQENEKQV 331

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
              ++           +  + +   +  ALS E                    DGFFA  
Sbjct: 332 -AFMK-----------SLGWEEERHVHTALSAE------------------SGDGFFAAH 361

Query: 438 LR 439
             
Sbjct: 362 FV 363


>gi|34763758|ref|ZP_00144676.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886472|gb|EAA23729.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 190

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 14/196 (7%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN + V+ +L+S V  K       L+  +       ++ +++  +  I    +R    +D
Sbjct: 1   MNVKQVAINLISQVD-KGAYSNIALNETFK---TLNINSKEKAFITEIFYGVIRNKKFLD 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++         KK  ++ LLR+S+ QI ++D  +  VV  A E AK+       +K +
Sbjct: 57  YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDNKGVVWEATELAKKKYG-VPISKFI 112

Query: 125 NSILRRVSREKIE------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N  LR   R K          +    +  IP+WF + LE  YG E +     +     Y+
Sbjct: 113 NGTLRNYLRNKDSELKSLADKKNYEVLYSIPKWFCDMLEKQYGNENLKQAITSLKKIPYL 172

Query: 179 DLTVKFDIETWAHKLN 194
            + V      W   LN
Sbjct: 173 SVRVNKLKYYWKKNLN 188


>gi|123475525|ref|XP_001320940.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3]
 gi|121903755|gb|EAY08717.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3]
          Length = 581

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 39/262 (14%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKR 274
             G    Q+  + IP        +  +LD+CA+PG KT+Q++         V A D+  +
Sbjct: 121 KMGYIRRQELVSMIPHHFMQVSKDDVILDMCASPGSKTSQIVESLSQGNGLVIANDIDLK 180

Query: 275 RLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           R   L   +  +      +      +       FD +L D PCS  GT+R+  +V  +  
Sbjct: 181 RCYTLLHQVQEIGTSKVLVTCNAAQYLPDFGIKFDKILADVPCSGDGTVRKDSNVASSWK 240

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            ++       QR +L +G+  +K GG +V+S CS++  + E V+  VL   P  VE+V  
Sbjct: 241 PNNSTAMHGLQRAILKRGLELLKVGGTLVYSTCSMNPIEDEAVIGSVLSEIPGCVEIVDT 300

Query: 394 NSAYWK----------SIDMAMALSPEGWIR------------------ITP------DM 419
           +S +             +      +P   +R                  + P      + 
Sbjct: 301 SSIFPTLKRHSGLTSWPVYTVSKENPNEMLRYELHSDVPDNLKGQVSKTMFPSGVEGLNN 360

Query: 420 LEKIDGVSSGMDGFFAVALRRL 441
             +         GFF   L++L
Sbjct: 361 CMRFFPHYENSGGFFVTVLKKL 382


>gi|123424241|ref|XP_001306540.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3]
 gi|121888120|gb|EAX93610.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3]
          Length = 619

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV----------TA 268
             G +  Q+  + IP        +  VLD+CAAPG KT Q+I    K            A
Sbjct: 132 RSGDFSRQELVSMIPPYFLDVQPDHFVLDMCAAPGSKTTQVIEMMLKKANGKPLSGIVVA 191

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
            +V+ +R   L   L RL      +   +   +     FD ++ D PCS  GT+R+ PD 
Sbjct: 192 NEVNAKRCHTLAGRLQRLDNRQIIVTSHEGQQFPELIKFDRIVCDVPCSGDGTLRKSPDA 251

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                  +       QR +L + +  +K GG  V+S CSL+  + E V+  VL+     V
Sbjct: 252 GPNWKLSEGQNLHVLQRAILTKALRLLKVGGRCVYSTCSLNPIEDEAVISSVLKECKGNV 311

Query: 389 ELVPLNSAY-----------------WKSIDMAMALSPEGWIRI----TP-------DML 420
           +++ ++  +                  K       +  E   R+     P       +  
Sbjct: 312 KILDVSDKFTDLKRTKGLKSWHVVTDEKEYMNPEEVPEEKKRRVPSSMFPIDVVEGIENS 371

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +     +   GFF   L +
Sbjct: 372 MRFLPHLNDTGGFFVCVLEK 391


>gi|194224036|ref|XP_001501273.2| PREDICTED: NOL1/NOP2/Sun domain family, member 2 [Equus caballus]
          Length = 759

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTAQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTIDVNGRKEVLFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  ++S          +     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSSELPGLKWMPGLTQWKVMTKDGQWFAEWDDVPHNRHTQIRPTMFPPKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441
                        +I        GFF   L + 
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKK 430


>gi|119628512|gb|EAX08107.1| NOL1/NOP2/Sun domain family, member 2, isoform CRA_c [Homo sapiens]
          Length = 602

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 94/269 (34%), Gaps = 61/269 (22%)

Query: 238 GTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
               +  +LD+CAAPG KT            +      V A DV  +R   L     RL 
Sbjct: 8   NVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLS 67

Query: 288 LYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
                ++  DA                  +D +L D PCS  GT+R++ DV     T + 
Sbjct: 68  SPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNS 127

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L  S   +EL  +++  
Sbjct: 128 LQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNEL 187

Query: 398 W-----KSIDMAMALSPEGWI-------------RITPDMLE----------------KI 423
                   I     ++ +G               +I P M                  +I
Sbjct: 188 PGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRI 247

Query: 424 DGVSSGMDGFFAVALRRLI-------QPK 445
                   GFF   L +         QPK
Sbjct: 248 LPHHQNTGGFFVAVLVKKSSMPWNKRQPK 276


>gi|255014668|ref|ZP_05286794.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_7]
          Length = 465

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           E    +  A  + + + + +     T A K  A +             S    P F  G 
Sbjct: 17  EEFDRLEAALSADVPVSIRINHSKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76

Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277
           ++VQ+AS+    Q         +  LDLCAAPGGK+  L      G+ + + +V + R  
Sbjct: 77  YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPKGSLLVSNEVIRSRSY 136

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N+ +       +I  D  +        FD ++ D PCS  G  R+  D       D
Sbjct: 137 VLAENIAKWGRPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++   A   R+++    + +KPGGI+++S C+ + ++ EE +  ++         +P   
Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  +          R  P              GFF  ALR+
Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290


>gi|195996847|ref|XP_002108292.1| hypothetical protein TRIADDRAFT_19981 [Trichoplax adhaerens]
 gi|190589068|gb|EDV29090.1| hypothetical protein TRIADDRAFT_19981 [Trichoplax adhaerens]
          Length = 704

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 116/329 (35%), Gaps = 74/329 (22%)

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
               +    D   W   L    + T    +K     +        G +  Q+A + IP  
Sbjct: 98  PPQPIPWYPDELAWQINLTKSTIKTSKEMMKLKKLLVDETAL---GNFSRQEAVSMIPPL 154

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV----------TALDVSKRRLEKLRCNLDR 285
           L     +  VLD+CAAPG KTAQLI    +            A D   +R   L     R
Sbjct: 155 LLDVQPHHYVLDMCAAPGSKTAQLIEFLHQDSSKIIPDGLIIANDADNKRCYMLVHQSKR 214

Query: 286 LHLYAEDIIEMDAFDYCP------------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           L+     I   DA                   ++D +L D PCS  GT+R++  +    +
Sbjct: 215 LNSPCFMITNYDASTMPNIYISKDGISKNIPIVYDRILCDVPCSGDGTLRKNIMLWKRWN 274

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            ++ +   C Q ++L++G+  +   GI+V+S CS +  ++E ++  +L+ +   ++LV +
Sbjct: 275 QNNALSLHCLQLRILIRGVELLARDGILVYSTCSFNPIENEAIIAALLKKAGGSIKLVDV 334

Query: 394 NSA-----------------------------------------YWKSIDMAMALSPEGW 412
           +                                           +  S   A  +  +  
Sbjct: 335 SDKLPALKRRSGMNTWKVLSKQGNWYNNFSDVPVSDSAMIKPSMFPPSESEAQEMHLDRC 394

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +RI P              GFF   L+++
Sbjct: 395 LRILPQDQ--------NTGGFFVAVLQKV 415


>gi|257096817|sp|A3D5D5|RSMF_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 486

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 74  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 133

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 134 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 194 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 254 QGVCEYLKQVYGDAVQFESLSDLF---DGADRATTAEGFLHVWPQIYDSE--------GF 302

Query: 434 FAVALRRLI 442
           F   L +  
Sbjct: 303 FVAKLTKTA 311


>gi|126174668|ref|YP_001050817.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
           OS155]
 gi|125997873|gb|ABN61948.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella baltica
           OS155]
          Length = 505

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 93  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 152

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 213 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGADRATTAEGFLHVWPQIYDSE--------GF 321

Query: 434 FAVALRRLI 442
           F   L +  
Sbjct: 322 FVAKLTKTA 330


>gi|225568054|ref|ZP_03777079.1| hypothetical protein CLOHYLEM_04127 [Clostridium hylemonae DSM
           15053]
 gi|225163150|gb|EEG75769.1| hypothetical protein CLOHYLEM_04127 [Clostridium hylemonae DSM
           15053]
          Length = 460

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 17/254 (6%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
           V     G        S    P +  G++++Q+ SA  P           VLDLCAAPGGK
Sbjct: 57  VPWIPNGFYYDGETVSPSKHPYYFAGLYYLQEPSAMTPASRLPVNPGEKVLDLCAAPGGK 116

Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAV 310
             +    +     + A D+S  R + L  N++   +    I+  +           FD +
Sbjct: 117 ATELGAELCGTGVLAANDISSSRAKGLLKNVEVFGIGNMLILSEEPGRLSGYFPGYFDKI 176

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS  G  R+   ++   +       +  Q+ +++Q    ++PGG++++S C+ D 
Sbjct: 177 LIDAPCSGEGMFRKDRKMVRAWEEHGPEFFSSIQKSIIVQAADMLRPGGMMMYSTCTFDG 236

Query: 371 QDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGV 426
           +++E+ V+ +L++ P    +++ P         +++    PE    +RI P  ++     
Sbjct: 237 RENEQTVEHLLKNRPEFEIMDMEPYEGFSPGRPELSETHCPELVRTVRIFPHHMKGE--- 293

Query: 427 SSGMDGFFAVALRR 440
                G +   L++
Sbjct: 294 -----GHYLALLKK 302


>gi|189468570|ref|ZP_03017355.1| hypothetical protein BACINT_04973 [Bacteroides intestinalis DSM
           17393]
 gi|189436834|gb|EDV05819.1| hypothetical protein BACINT_04973 [Bacteroides intestinalis DSM
           17393]
          Length = 481

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 125/308 (40%), Gaps = 23/308 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-----TWAHKLNAVMLPT 200
             +P  F +R  +  G E    ++DA      + + +  +       +  H  +  +  +
Sbjct: 1   MDLPVSFADRTRSLLGDEEYNKLADALNDEQPVSIRLNEEKLPGSSFSLFHASSDRVPWS 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTA 257
                 +   +    P F  G ++VQ+AS+    Q            +LDLCAAPGGK+ 
Sbjct: 61  ATGCYLDRRLTFTFDPLFHAGCYYVQEASSMFVEQALKQYIGERPSVMLDLCAAPGGKST 120

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVD 313
                   G+ + A +V + R + L  NL +       +   D  D+   +  FD +L D
Sbjct: 121 HARSVLPVGSLLVANEVIRNRSQILAENLTKWGHPGVVVTNNDPADFAGLEDFFDVILTD 180

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  G  R+ P  +     +++      QR+++      +KPGG++++S C+ + ++ 
Sbjct: 181 VPCSGEGMFRKDPVAVSEWSPENVEICWQRQRRIISDIWPSLKPGGLLIYSTCTYNTKED 240

Query: 374 EEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           EE ++ +        E++P++  A W      +A       R  P   +          G
Sbjct: 241 EENIRWM--HDEFGAEILPVDAPAEWNITGNLLAGEDFPVYRFLPHRTKGE--------G 290

Query: 433 FFAVALRR 440
           FF   LR+
Sbjct: 291 FFLAVLRK 298


>gi|291411162|ref|XP_002721865.1| PREDICTED: NOL1/NOP2/Sun domain family, member 2 [Oryctolagus
           cuniculus]
          Length = 735

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 98/273 (35%), Gaps = 54/273 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 137 ISRQEAVSMIPPLLLSVQPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 196

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 197 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQMDVDGRKEILFYDRILCDVPCSGDGTM 256

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 257 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 316

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 317 KSEGALELADVSAELPGLKWMPGLTQWKVMTRDGQWFADWDEVPHSRHTQIRPTMFPPKD 376

Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441
                        +I        GFF   L + 
Sbjct: 377 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKK 409


>gi|328858613|gb|EGG07725.1| hypothetical protein MELLADRAFT_85533 [Melampsora larici-populina
           98AG31]
          Length = 729

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 106/304 (34%), Gaps = 63/304 (20%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
             L+     +   P F +                Q+A + +P  L        V D CAA
Sbjct: 117 WELRASKHVVRKSPEFKKFQNFLVYETEAGNISRQEAVSMVPTLLLDVQPQHFVFDACAA 176

Query: 252 PGGKTAQLIVSGAKV---------TALDVSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDY 301
           PG KTAQL+ S              A D   +R    +  +L RL   +  I   DA  Y
Sbjct: 177 PGSKTAQLVESIHSSKSLIPPGLLIANDSDYKRSHLLVHQSLRRLPSPSTMITNHDASMY 236

Query: 302 C------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                     LFD +L D PCS  GT+R++  +       + V     Q ++L + I+ +
Sbjct: 237 PSLKIDGKPLLFDRILCDVPCSGDGTLRKNGGIWRDWTPANGVGLHGLQMRILSRCIALL 296

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR- 414
           KPGG +V+S CSL+  ++E V+   L   P  + LV ++    +        + +   R 
Sbjct: 297 KPGGRMVYSTCSLNPLENEAVLSATLNLHP-EMTLVDVSDKLPELKRRPGMTTWKVMNRT 355

Query: 415 -------------------------ITPD---------MLEKIDGVSSGMDGFFAVALRR 440
                                    + PD            +I        GFF   L +
Sbjct: 356 LGKNDEVKSYDDLEGDENKARYSATLWPDGKEQAKGLERCLRIYPHLQNTGGFFVAVLVK 415

Query: 441 LIQP 444
              P
Sbjct: 416 AKGP 419


>gi|298375932|ref|ZP_06985888.1| NOL1/NOP2/sun family protein [Bacteroides sp. 3_1_19]
 gi|298266969|gb|EFI08626.1| NOL1/NOP2/sun family protein [Bacteroides sp. 3_1_19]
          Length = 465

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           E    +  A  + + + + +     T A K  A +             S    P F  G 
Sbjct: 17  EEFDRLEAALSADVPVSIRINPMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76

Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277
           ++VQ+AS+    Q         +  LDLCAAPGGK+  L      G+ + + +V + R  
Sbjct: 77  YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N+ +       +I  D  +        FD ++ D PCS  G  R+  D       D
Sbjct: 137 VLAENIAKWGHPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++   A   R+++    + +KPGGI+++S C+ + ++ EE +  ++         +P   
Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  +          R  P              GFF  ALR+
Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290


>gi|256841167|ref|ZP_05546674.1| tRNA and rRNA cytosine-C5-methylase [Parabacteroides sp. D13]
 gi|256737010|gb|EEU50337.1| tRNA and rRNA cytosine-C5-methylase [Parabacteroides sp. D13]
          Length = 465

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           E    +  A  + + + + +     T A K  A +             S    P F  G 
Sbjct: 17  EEFDRLEAALSADVPVSIRINPMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76

Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277
           ++VQ+AS+    Q         +  LDLCAAPGGK+  L      G+ + + +V + R  
Sbjct: 77  YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N+ +       +I  D  +        FD ++ D PCS  G  R+  D       D
Sbjct: 137 VLAENIAKWGHPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++   A   R+++    + +KPGGI+++S C+ + ++ EE +  ++         +P   
Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  +          R  P              GFF  ALR+
Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290


>gi|255505682|ref|ZP_05347531.3| rRNA methylase [Bryantella formatexigens DSM 14469]
 gi|255266515|gb|EET59720.1| rRNA methylase [Bryantella formatexigens DSM 14469]
          Length = 562

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 108/307 (35%), Gaps = 61/307 (19%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E  A      +         E  ++    P +  G++++Q+ SA  P  +        VL
Sbjct: 57  ERLAPFHLKKIPWVKNGYFYEEQDAPARHPFYYAGLYYLQEPSAMTPASVLPVHPGDRVL 116

Query: 247 DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           DLCAAPGGK  +    +     + A D+S  R + L  N++   +    +          
Sbjct: 117 DLCAAPGGKATELGAKLRGEGLLVANDISASRAKALLKNIEVFGISNAFVTNEVPAKLAE 176

Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
           +    FD +LVDAPCS  G  R+ P      D       A  Q++++L+    + PGG++
Sbjct: 177 QFPEFFDKILVDAPCSGEGMFRKDPAAAGAWDVKKSFACAKQQKEIILRAAQMLAPGGLL 236

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----------- 410
           ++S C+   +++E+V+  +L      +EL+ +      S  +  A   +           
Sbjct: 237 LYSTCTFSPEENEQVIAYLLDKR-DDMELLEIPQYEGFSPGIPAAARADWIEADDGLMEA 295

Query: 411 ------------------------------------GWIRITPDMLEKIDGVSSGMDGFF 434
                                                 +RI P  ++          G F
Sbjct: 296 DALVALAEKKWAAAGRFTNQHGEEPDLAEDRYAELKKCVRIFPHKMQGE--------GHF 347

Query: 435 AVALRRL 441
              L R 
Sbjct: 348 LALLHRK 354


>gi|116617804|ref|YP_818175.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096651|gb|ABJ61802.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 470

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 32/242 (13%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
            + Q+ SA    ++        VLDL AAPGGK+      +     + + ++   R + L
Sbjct: 76  VYSQEPSAQFVGEVVRPNPGERVLDLAAAPGGKSTHLAAFMGQKGLLWSNEIFLNRAKIL 135

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R+ +    +      +   K    FD +L+DAPCS  G  R+ P  +        
Sbjct: 136 SENIERMGIKNAIVSSHTPAELSSKLPGFFDKILLDAPCSGEGMFRKDPGAIAYWHEHYP 195

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            ++A  QR++L + +  ++PGG +V+S C+   ++ E+++  ++ + P    +       
Sbjct: 196 AENATRQREILTEAVKMLRPGGQIVYSTCTFAPEEDEQIINWLMAAYPEFSLVSIEKPDG 255

Query: 398 WKSIDMAMALSPEGWI-------------------RITPDMLEKIDGVSSGMDGFFAVAL 438
               D       E ++                   R+ P  LE          G F   L
Sbjct: 256 ANLSDARPEWIDEAFVNGTTEHSATTTKDVMKKAARLWPHKLEGE--------GHFVAKL 307

Query: 439 RR 440
            +
Sbjct: 308 VK 309


>gi|170097227|ref|XP_001879833.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645236|gb|EDR09484.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 749

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 106/330 (32%), Gaps = 98/330 (29%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            +     +++   P F +                Q+  + +P        +  V+D+CAA
Sbjct: 118 WQFNVSKKALRKSPEFKKFHSFLVYETEVGNISRQEGVSMLPPLFLEVEPHHKVMDMCAA 177

Query: 252 PGGKTAQ-------------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
           PG KTAQ               +    V A D   +R   L     RL   A  +  +DA
Sbjct: 178 PGSKTAQLLEALHANDTITSTSIPPGLVLANDSDNKRTHLLIHQSARLPSPALMVTNLDA 237

Query: 299 FDYC---------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
            +Y                 + +FD +L D PCS  GT+R++  +     T D       
Sbjct: 238 SNYPGIQIPVVTQDGGTQMDQLMFDRILCDVPCSGDGTMRKNMGIWKGWSTMDGNGLHSL 297

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK---- 399
           Q ++L + ++ +   G +V+S CSL+  ++E VV + L ++    ELV +          
Sbjct: 298 QVRILQRAMNLLAKDGRIVYSTCSLNPVENEAVVAEALNNNH-DFELVDVTPKLPSLKRR 356

Query: 400 ----------------------------------------------SIDMAMALSPEGWI 413
                                                           +    L+    +
Sbjct: 357 PGLTSWIPTVIIDKVNKIDMPFPTYEQFKTSDSDQTLKDKMSKGCWPPENVDKLNLTRCL 416

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           RI P + +          GFF   L +  +
Sbjct: 417 RIYPHLQDSG--------GFFVAVLEKKGK 438


>gi|257096819|sp|A9L4E6|RSMF_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
          Length = 486

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 74  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSTKWQCVLDLASAPGSKTTQ 133

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 134 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 194 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 254 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 302

Query: 434 FAVALRRLI 442
           F   L +  
Sbjct: 303 FVAKLTKTA 311


>gi|160875680|ref|YP_001554996.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica
           OS195]
 gi|160861202|gb|ABX49736.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS195]
 gi|315267869|gb|ADT94722.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS678]
          Length = 505

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                +L    E I  L    E    +   +   P     +     VLDL +APG KT Q
Sbjct: 93  YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSTKWQCVLDLASAPGSKTTQ 152

Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313
           +   + +   + A + S  R++ L  N+ R+      +   D   +     + FDAVL+D
Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APC   GT+R+  D L     DD++  +  Q+ L+      +KPGG +V+S C+L++ ++
Sbjct: 213 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + V + + +     V+   L+  +        A + EG++ + P + +          GF
Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 321

Query: 434 FAVALRRLI 442
           F   L +  
Sbjct: 322 FVAKLTKTA 330


>gi|24374151|ref|NP_718194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella oneidensis
           MR-1]
 gi|81461270|sp|Q8EDY2|RSMF_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|24348654|gb|AAN55638.1|AE015702_8 NOL1/NOP2/sun family protein [Shewanella oneidensis MR-1]
          Length = 474

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 119/251 (47%), Gaps = 18/251 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254
               G     +  E + +     +G++++Q+AS+ +P         +   VLDL AAPG 
Sbjct: 65  WCKDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLAAAPGS 124

Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309
           KT Q+   + +   + A + S  R++ L  N+ R+      +   D   +     + FDA
Sbjct: 125 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 184

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPC   GT+R+  D L +   D+++  +  Q+ L+      +KPGG +V+S C+L+
Sbjct: 185 VLIDAPCGGEGTVRKDVDALKSWSLDEVIAISETQKALIESAFLALKPGGSLVYSTCTLN 244

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +++ V + + ++    V+   L+  +        A +PEG++ + P + +        
Sbjct: 245 RHENQGVCEYLQQTYGNAVQFESLSQLF---DGADKATTPEGFLHVWPQIYDSE------ 295

Query: 430 MDGFFAVALRR 440
             GFF   L +
Sbjct: 296 --GFFVAKLTK 304


>gi|157138266|ref|XP_001664204.1| hypothetical protein AaeL_AAEL013968 [Aedes aegypti]
 gi|108869539|gb|EAT33764.1| conserved hypothetical protein [Aedes aegypti]
          Length = 752

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 100/283 (35%), Gaps = 70/283 (24%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---------LIVSGAKVTALDVSK 273
              Q+A + IP  + G      VLD+CAAPG KTAQ           +    V A D+  
Sbjct: 158 ISRQEAVSMIPPLVLGVEPQHKVLDMCAAPGSKTAQLIEALHAGGENLPTGFVMANDIDN 217

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTI 322
            R   L     RL      +   D+ ++                +D +L D PCS  GT+
Sbjct: 218 NRCYMLVHQAKRLSSPCCVVTNADSSNFPNLKLKTESGEMQTLKYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+  +L 
Sbjct: 278 RKNPDIWTKWNLQHACNLHGLQYRIVRRGAELLEVGGKLVYSTCSLNPIENEAVLHYLLT 337

Query: 383 SSPIPVELVPLNSA-----------------------------------------YWKSI 401
            +   +E+V  +                                           +  + 
Sbjct: 338 QTGDAMEIVDASHLLPSLKHNPGITYWEPATKDMKFYKTFDEVPQMYHTIIRPQMFPPAP 397

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           +     + E  IR+ P              GFF   L +  +P
Sbjct: 398 EDVAKFNLEKCIRVMPH--------QQNTGGFFIALLEKK-KP 431


>gi|46250336|gb|AAH68818.1| LOC414460 protein [Xenopus laevis]
          Length = 713

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 141/418 (33%), Gaps = 69/418 (16%)

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148
           +  +  Y ++     +     Q  +   +  + K ++++     RE +    RI G    
Sbjct: 30  AAWEGGYPEIIKENKLFEHYYQELKIVPDGEWDKFMDAL-----REPLPATIRITGYKSH 84

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208
            +     L+  Y KE      D         L+   +   W   L+  ++       K  
Sbjct: 85  AKEILHCLKEKYFKELPDIEVDGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFH 144

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQ 258
              +        G    Q+A + IP  L     +  +LD+CAAPG KT            
Sbjct: 145 QFLVSETES---GNISRQEAVSMIPPVLLNVQPHHKILDMCAAPGSKTAQIIEMLHADMN 201

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFD 308
           +      V A DV  +R   L     RL+     ++  DA                  +D
Sbjct: 202 VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLIENNGSREVLYYD 261

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG +V+S CSL
Sbjct: 262 RILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSL 321

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI---------- 413
           +  + E V+  +L  S   +EL  + S          I     ++ EG            
Sbjct: 322 NPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMPGITQWRVMTKEGQWFEKWEDVPTS 381

Query: 414 ---RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
              +I P M                  +I        GFF   L +         QPK
Sbjct: 382 RHTQIRPTMFPLKDEEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMPWNKRQPK 439


>gi|118600701|gb|AAH25549.1| Nsun2 protein [Mus musculus]
          Length = 498

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 100/274 (36%), Gaps = 54/274 (19%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT QLI               V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+  + E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          +     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI 442
                        +I        GFF   L +  
Sbjct: 398 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKA 431


>gi|147898427|ref|NP_001084513.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Xenopus laevis]
 gi|82228491|sp|Q4V7N2|NSUN2_XENLA RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName:
           Full=NOL1/NOP2/Sun domain family member 2
 gi|66912076|gb|AAH97814.1| LOC414460 protein [Xenopus laevis]
          Length = 698

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 141/418 (33%), Gaps = 69/418 (16%)

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148
           +  +  Y ++     +     Q  +   +  + K ++++     RE +    RI G    
Sbjct: 30  AAWEGGYPEIIKENKLFEHYYQELKIVPDGEWDKFMDAL-----REPLPATIRITGYKSH 84

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208
            +     L+  Y KE      D         L+   +   W   L+  ++       K  
Sbjct: 85  AKEILHCLKEKYFKELPDIEVDGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFH 144

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQ 258
              +        G    Q+A + IP  L     +  +LD+CAAPG KT            
Sbjct: 145 QFLVSETES---GNISRQEAVSMIPPVLLNVQPHHKILDMCAAPGSKTAQIIEMLHADMN 201

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFD 308
           +      V A DV  +R   L     RL+     ++  DA                  +D
Sbjct: 202 VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLIENNGSREVLYYD 261

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L D PCS  GT+R++ DV     T + ++    Q ++  +G+  +  GG +V+S CSL
Sbjct: 262 RILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSL 321

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI---------- 413
           +  + E V+  +L  S   +EL  + S          I     ++ EG            
Sbjct: 322 NPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMPGITQWRVMTKEGQWFEKWEDVPTS 381

Query: 414 ---RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
              +I P M                  +I        GFF   L +         QPK
Sbjct: 382 RHTQIRPTMFPLKDEEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMPWNKRQPK 439


>gi|281423530|ref|ZP_06254443.1| NOL1/NOP2/sun family protein [Prevotella oris F0302]
 gi|281402350|gb|EFB33181.1| NOL1/NOP2/sun family protein [Prevotella oris F0302]
          Length = 430

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 111/311 (35%), Gaps = 21/311 (6%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL----NAVMLP 199
               +P+ F E      G+E   A+         + + +       A          +  
Sbjct: 1   MTMNLPKDFIEYTRRLMGEEMYAALEKGMQEEAPVSIRLNPFKLNTAQVCVKDRETDVPW 60

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTA 257
                      +    P    G+++VQ+A++              + +LDLCA+PGGK+ 
Sbjct: 61  CRNAMYLTSRPNFTFDPMLHAGLYYVQEAASMFVDHVLREVVKKPVRMLDLCASPGGKST 120

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVD 313
                  +G+ + + +  ++R   L  N+ +  +    +           K  FD +L D
Sbjct: 121 CAYAALPAGSLLFSNEPIRQRANILNENVLKFGVPDIIVTNNYARDYQQSKLQFDVILTD 180

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  G  R+    +       + + A  QR+++    S +KPGG++++S C+ +  + 
Sbjct: 181 VPCSGEGMFRKDAGAIDDWSMKKVEECARLQREIVSDIWSCLKPGGLLIYSTCTFNAHED 240

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           EE V  + +        +P   A+     M   +      R  P              G 
Sbjct: 241 EENVAWIAKELGADFIEIPTEKAW---NIMGSLIDKNPVYRFVPGKTRGE--------GL 289

Query: 434 FAVALRRLIQP 444
           F   LR+  +P
Sbjct: 290 FMAVLRKYGEP 300


>gi|221122446|ref|XP_002154232.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 452

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 106/255 (41%), Gaps = 39/255 (15%)

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
           +++ Q+  + +   +    +   +LD+CA+PGGKT+ +   + +   + A+D S++++ K
Sbjct: 200 LFFPQNLPSILVGHICNPQDGDLILDMCASPGGKTSHVAVLMKNQGTIIAIDKSEKKISK 259

Query: 279 LRCNLDRLHLYAEDII------------------------EMDAFDYCPKKLFDAVLVDA 314
           +  N   + L                              + D     P   FD +L+D 
Sbjct: 260 ITENCVIMGLTNVKCFAYDSSKLCCHEACDNSKLSFDEQNKNDLKPPFPPCFFDKILLDP 319

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G   + P +       ++     +Q+KL  Q +S +KPGG +++S C+L  Q++E
Sbjct: 320 PCSGIG---QRPQLRSVLTDKELQSYPIYQKKLFQQAVSLLKPGGRLIYSTCTLLPQENE 376

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW--IRITPDML------EKIDGV 426
           E +   L++    ++L+  +    +       LSPE    ++            +    +
Sbjct: 377 EQISWALKTFK-ELKLLKQDIIIGRPGLNNYGLSPEECDKVQRFDQCYLNSLENDLYRSL 435

Query: 427 SSGMDGFFAVALRRL 441
                GFF   L ++
Sbjct: 436 EFDTIGFFIACLTKI 450


>gi|84995588|ref|XP_952516.1| sun-family protein [Theileria annulata strain Ankara]
 gi|65302677|emb|CAI74784.1| sun-family protein, putative [Theileria annulata]
          Length = 383

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 108/326 (33%), Gaps = 42/326 (12%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
           +  R                  P+   E ++  YG E+ + I +         L V    
Sbjct: 83  LSDRWRLMTNNKSLPPHVRCSFPQELFELIDEEYGLEKAIKICNILNEEPVTFLRVNTLK 142

Query: 185 -DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLF 237
              +     L    +P            +         P +  G+  +QD S+ I  Q  
Sbjct: 143 LSRDKAYKFLLHKGVPVEKCVFSNCGLFVQDKRKLLESPEYKSGIVEIQDESSQIIGQNI 202

Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD C   GGK       + +  ++   DV+   L+K +  + R  +    I+
Sbjct: 203 NCSEGDHVLDFCCGSGGKSLVFGPKLGNRGRIYLHDVNDNLLQKAKKRMHRAGIRNYYIL 262

Query: 295 EMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           + +           D V+VD PCS  G  R +PD  W+   +++      QR ++ + + 
Sbjct: 263 DRNLENIETFYGKMDYVIVDVPCSGIGACRTNPDRKWSFKRENLNGLLMNQRLIVEESLP 322

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           F+K  G +V+  CS+ K +++  V    +                               
Sbjct: 323 FLKKNGKLVYITCSIFKAENQSQVDFFSKKYN---------------------------- 354

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALR 439
            + P+        S GM+G++   L 
Sbjct: 355 -LRPEEQILQLPESRGMNGYYMATLV 379


>gi|301311882|ref|ZP_07217804.1| NOL1/NOP2/sun family protein [Bacteroides sp. 20_3]
 gi|300829984|gb|EFK60632.1| NOL1/NOP2/sun family protein [Bacteroides sp. 20_3]
          Length = 465

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           E    +  A  + + + + +     T A K  A +             S    P F  G 
Sbjct: 17  EEFDRLEAALNADVPVSIRINSMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76

Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277
           ++VQ+AS+    Q         +  LDLCAAPGGK+  L      G+ + + +V + R  
Sbjct: 77  YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N+ +       +I  D  +        FD ++ D PCS  G  R+  D       D
Sbjct: 137 VLAENIAKWGRPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++   A   R+++    + +KPGGI+++S C+ + ++ EE +  ++         +P   
Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  +          R  P              GFF  ALR+
Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290


>gi|224536159|ref|ZP_03676698.1| hypothetical protein BACCELL_01025 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522241|gb|EEF91346.1| hypothetical protein BACCELL_01025 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 481

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 126/308 (40%), Gaps = 23/308 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-----TWAHKLNAVMLPT 200
             +P  F +R     G E    ++DA      + + +  +       +  H  +  +  +
Sbjct: 1   MDLPVSFADRTRLLLGDEEYNKLADALNGEQPVSIRLNEEKLPDSSFSLFHTSSGRVPWS 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTA 257
                 +   +    P F  G ++VQ+AS+    Q        +   +LDLCAAPGGK+ 
Sbjct: 61  STGFYLDRRLTFTFDPLFHAGCYYVQEASSMFVEQALKQYIGETPSVMLDLCAAPGGKST 120

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVD 313
                  +G+ + A +V + R + L  NL +       +   D  D+   +  FD +L D
Sbjct: 121 HARSVLPAGSLLVANEVIRNRSQILAENLTKWGHPGVVVTNNDPADFADLEGFFDVILTD 180

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  G  R+ P  +     +++      QR+++      +KPGG++++S C+ + Q+ 
Sbjct: 181 VPCSGEGMFRKDPVAVSEWSPENVEICWQRQRRIISDIWPSLKPGGLLIYSTCTYNTQED 240

Query: 374 EEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           EE ++ +        E++P++  A W      +A       R  P   +          G
Sbjct: 241 EENIRWM--RDEFGAEILPVDAPAAWNITGNLLAGEDFPVYRFLPHRTKGE--------G 290

Query: 433 FFAVALRR 440
           FF   LR+
Sbjct: 291 FFLAVLRK 298


>gi|332829260|gb|EGK01914.1| hypothetical protein HMPREF9455_00036 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 457

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 17/231 (7%)

Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALD 270
           P F  G ++VQ+AS+    Q       +++ VLDLCAAPGGK    A L+   + + + +
Sbjct: 68  PLFHAGCYYVQEASSMFIGQALKQYAEDDVKVLDLCAAPGGKSTLIADLLNKDSLLVSNE 127

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329
           V + R   L  N+ +       +I  D       K  FD +LVDAPCS  G  R+    +
Sbjct: 128 VIRSRANVLSENMTKWGNPNVVVINNDPAQIGKLKGFFDIILVDAPCSGEGMFRKDEGAI 187

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
                D+       Q+++L      +KP G++++S C+ + +++EE VQ +       V 
Sbjct: 188 SEWSVDNARLCKERQQRILADIWPALKPDGLLLYSTCTYNLEENEENVQWIRDELGAEVL 247

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            V +   +  S   A  +      R  P   +          GFF   LR+
Sbjct: 248 PVDIQEEWGISPSFAEDIPAC---RFFPHKTKGE--------GFFFALLRK 287


>gi|150008796|ref|YP_001303539.1| tRNA and rRNA cytosine-C5-methylase [Parabacteroides distasonis
           ATCC 8503]
 gi|149937220|gb|ABR43917.1| tRNA and rRNA cytosine-C5-methylase [Parabacteroides distasonis
           ATCC 8503]
          Length = 465

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           E    +  A  + + + + +     T A K  A +             S    P F  G 
Sbjct: 17  EEFDRLEAALSADVPVSIRINPMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76

Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277
           ++VQ+AS+    Q         +  LDLCAAPGGK+  L      G+ + + +V + R  
Sbjct: 77  YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N+ +       +I  D  +        FD ++ D PCS  G  R+  D       D
Sbjct: 137 VLAENIAKWGHPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++   A   R+++    + +KPGGI+++S C+ + ++ EE +  ++         +P   
Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  +          R  P              GFF  ALR+
Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290


>gi|329961546|ref|ZP_08299627.1| NOL1/NOP2/sun family protein [Bacteroides fluxus YIT 12057]
 gi|328531758|gb|EGF58587.1| NOL1/NOP2/sun family protein [Bacteroides fluxus YIT 12057]
          Length = 500

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 18/233 (7%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269
           P F  G ++VQ+A++    Q          +++LDLCAAPGGK+         G+ + A 
Sbjct: 76  PLFHAGCYYVQEAASMFVEQALRRYTGDVPVTMLDLCAAPGGKSTHARSVLPKGSLLVAN 135

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDV 328
           +V + R + L  NL +       +   D  D+      FD +L D PCS  G  R+ P  
Sbjct: 136 EVIRNRSQILAENLTKWGHPGVVVTNNDPADFSSLTDFFDILLTDVPCSGEGMFRKDPVA 195

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           +     +++      QR++L      +KP GI+++S C+ + +++EE V+ +        
Sbjct: 196 VSEWSPENVDICWQRQRRILSDIWPCLKPEGILIYSTCTYNTKENEENVRWM--RDEFGA 253

Query: 389 ELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           E++PL  SA W      ++       R  P   +          GFF   LR+
Sbjct: 254 EVLPLEISADWNITGNLLSGEDFPVYRFLPHRTKGE--------GFFLAVLRK 298


>gi|282881637|ref|ZP_06290300.1| NOL1/NOP2/sun family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304396|gb|EFA96493.1| NOL1/NOP2/sun family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 487

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 122/316 (38%), Gaps = 23/316 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPL--YIDLTVKFDIETWAHKLNAVMLPTGGI 203
            ++PE F+       G +     + +       ++ L              + +      
Sbjct: 1   MVLPEAFENYTRAMMGDDLFAHFAHSMQQDATAFVRLNHYKCPTAKMALAASKVPWYEYG 60

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI- 260
              +   +    P F  G+++VQ+ S+    Q+      + + +LD+CAAPGGK+     
Sbjct: 61  YALDARPAFTFDPLFHAGLYYVQEQSSMFLAQVLRQFVQSPVRMLDMCAAPGGKSTLARL 120

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
               G+ +   + ++ R++ L  N+ +       +      +       F  +L D PCS
Sbjct: 121 ELPKGSTLVCNEPNRSRVQILNENIQKCGHPEVMVTNNYPKEIRQSGLKFQVILCDVPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R++ + +     D++ K    QR+++ +    ++PGG++++S C+ + +++EE V
Sbjct: 181 GEGMFRKNANAIDEWSVDNVNKCQQLQREIVAEAWQCLEPGGLLIYSTCTFNTKENEENV 240

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-------------GWIRITPDMLEKID 424
             + +        V +   +    ++  A + E                R  P   +K  
Sbjct: 241 AWICQELGATTLKVKVEEDWNIMGNLLSAPATEDTTNKESKHSSAFNVYRFIPGYQDKPG 300

Query: 425 GVSSGMDGFFAVALRR 440
            +    +G F   LR+
Sbjct: 301 NIYG--EGLFMAVLRK 314


>gi|222823945|ref|YP_002575519.1| NOL1/NOP2/sun family protein [Campylobacter lari RM2100]
 gi|222539167|gb|ACM64268.1| NOL1/NOP2/sun family protein [Campylobacter lari RM2100]
          Length = 297

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 22/293 (7%)

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
             + + +  ++ + I    +    I L      E    K                   + 
Sbjct: 20  NAIFDSFKTQKDVNIFRNSLIVEDIILEEILKKEGVKFKKIDEFCYKIPQEF---KSKLS 76

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALD 270
           S+  F EG +++Q+ S+ +  +  G     SVLD+CAAPGGK    A  + +   + + +
Sbjct: 77  SMNAFNEGKFYIQNYSSYLCAKTLGVKAGESVLDMCAAPGGKSLNLANFMQNEGYLASCE 136

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDV 328
           +SK R   L+  ++   +        DA          FD +L+DAPCS+          
Sbjct: 137 LSKARFFTLKKTMENYQVKIVKCFLKDARIIGKACPLKFDKILLDAPCSTFA----KMGF 192

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
              ++T +I + A  Q+KLL   +  +K GG +V+S C+  ++++E V++  LR+    +
Sbjct: 193 EIQKNTKEIKQIANLQKKLLHSALLALKHGGELVYSTCTFLREENEAVLENALRNENFKL 252

Query: 389 ELVPLNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           EL+  +      I   +         R+ PD            DGFF   +++
Sbjct: 253 ELLDFDLVNVDFICAKSDEFDLSFAKRVLPDDYA---------DGFFIAKVKK 296


>gi|156396524|ref|XP_001637443.1| predicted protein [Nematostella vectensis]
 gi|156224555|gb|EDO45380.1| predicted protein [Nematostella vectensis]
          Length = 464

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 161/444 (36%), Gaps = 43/444 (9%)

Query: 11  SSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++ +L  V+ K+ ++ + +++ E+ +             + A+V  TL++   I+ + + 
Sbjct: 8   AAKVLEKVLHKKGTVKSLVIESEFANKKK----------LYALVCETLKYRQVIEDIFEQ 57

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                L  +K        V V ++L+        +    +  +    N+   +   + ++
Sbjct: 58  --TKFLKCEKQLKHSFALVLVYELLF-----GHGLKCGGKFKQSIARNKSSLQSALAKVK 110

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
             ++           +       +    N         I        ++  +    +   
Sbjct: 111 IKAKVSRNKDLLPKSVQTAGTIPRYARINTLLTTADKVIKHFQEESYHLVPSTDKRLYVE 170

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
             K+ A       + +      +     +  G   +QD ++ +P  +        V+D C
Sbjct: 171 GSKIFAQDPHIPEVLVFPPSTDLHDHTLYINGHILLQDKASCLPAHVISLPPGAHVIDAC 230

Query: 250 AAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           AAPG K++     + +  +V + D+S  RL  ++  + +              D  P+  
Sbjct: 231 AAPGNKSSHLAAKLNNNGRVFSFDISASRLAVMQKQMKKAGATCVVTEHKSFLDVDPRSS 290

Query: 307 FDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS----ACFQRKLLLQGISF--VK 356
                  ++VD  CS +G I R   ++     DD+ +     A FQ  +L    SF  VK
Sbjct: 291 QYRNVEYIVVDPSCSGSGIISRLDGLVSDEQEDDLQQRLESLADFQLSVLTHAFSFPAVK 350

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
               V +S CS+  Q++E+VV K L+ S    EL       W S  + +    E  +R +
Sbjct: 351 K---VAYSTCSIHSQENEDVVHKALKVSQGQFEL-AHALESWPSRGLPVFQGAEKCLRAS 406

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P         S   +GFF    +R
Sbjct: 407 P--------ESDHTNGFFVALFQR 422


>gi|307596216|ref|YP_003902533.1| Fmu (Sun) domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551417|gb|ADN51482.1| Fmu (Sun) domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 406

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 100/241 (41%), Gaps = 25/241 (10%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTA 268
           +  +  +  G+++ Q   A     +     N  ++D+ AAPGGKT+ +I      A V A
Sbjct: 179 VREMREYELGLFYDQSLPAQWVGHVVDPKPNEVIIDMNAAPGGKTSHVIQLSGGKAIVHA 238

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIE------MDAFDYCPKKLFDAVLVDAPCSSTGTI 322
            D S+ ++ ++   L+RL +     +E      +D          D VL+D PC+  G  
Sbjct: 239 FDRSEGKVREMIEILNRLGMNGLYRVEVRDTRYLDIDRPDLIGSADKVLIDPPCTDMGV- 297

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
              P +   +  D ++  + +QR+ +      ++PGGI+++S C++   ++E  +     
Sbjct: 298 --RPRLFDVKTMDLVMAMSNYQRQFIKVAWRLLRPGGILIYSTCTIPPLENENNIAYA-- 353

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
              +  E++ ++        +         +R  P +            GFF   LR+  
Sbjct: 354 -EGLGFEVIDISIPRASGGLIDKY--KNSVVRFYPHV--------HDTPGFFIAKLRKPS 402

Query: 443 Q 443
           Q
Sbjct: 403 Q 403


>gi|148676130|gb|EDL08077.1| NOL1/NOP2/Sun domain family 6, isoform CRA_b [Mus musculus]
          Length = 494

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E I   P F        ++Q+  +++   +        +LD+CAAPGGKT      +   
Sbjct: 218 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 277

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++ KL+ N   L L++      DA                    + FD 
Sbjct: 278 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 337

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +++DAPCS  G   + P++  T    ++      QRKLL   +  +KPGG++V+S C++ 
Sbjct: 338 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 394

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P          +   L+ E   ++     +        
Sbjct: 395 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 451

Query: 430 MD---------------------GFFAVALRR 440
           MD                     GFF     +
Sbjct: 452 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 483


>gi|148676129|gb|EDL08076.1| NOL1/NOP2/Sun domain family 6, isoform CRA_a [Mus musculus]
          Length = 455

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E I   P F        ++Q+  +++   +        +LD+CAAPGGKT      +   
Sbjct: 179 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 238

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++ KL+ N   L L++      DA                    + FD 
Sbjct: 239 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 298

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +++DAPCS  G   + P++  T    ++      QRKLL   +  +KPGG++V+S C++ 
Sbjct: 299 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 355

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P          +   L+ E   ++     +        
Sbjct: 356 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 412

Query: 430 MD---------------------GFFAVALRR 440
           MD                     GFF     +
Sbjct: 413 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 444


>gi|260099664|ref|NP_001159415.1| putative methyltransferase NSUN6 isoform c [Mus musculus]
 gi|123233116|emb|CAM20245.1| NOL1/NOP2/Sun domain family 6 [Mus musculus]
          Length = 425

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E I   P F        ++Q+  +++   +        +LD+CAAPGGKT      +   
Sbjct: 149 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 208

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++ KL+ N   L L++      DA                    + FD 
Sbjct: 209 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 268

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +++DAPCS  G   + P++  T    ++      QRKLL   +  +KPGG++V+S C++ 
Sbjct: 269 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 325

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P          +   L+ E   ++     +        
Sbjct: 326 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 382

Query: 430 MD---------------------GFFAVALRR 440
           MD                     GFF     +
Sbjct: 383 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 414


>gi|260099658|ref|NP_083226.3| putative methyltransferase NSUN6 isoform a [Mus musculus]
 gi|260099660|ref|NP_001159413.1| putative methyltransferase NSUN6 isoform a [Mus musculus]
 gi|119372268|sp|Q7TS68|NSUN6_MOUSE RecName: Full=Putative methyltransferase NSUN6; AltName:
           Full=NOL1/NOP2/Sun domain family member 6
 gi|12855745|dbj|BAB30442.1| unnamed protein product [Mus musculus]
 gi|26346707|dbj|BAC37002.1| unnamed protein product [Mus musculus]
 gi|74208798|dbj|BAE21163.1| unnamed protein product [Mus musculus]
 gi|123233117|emb|CAM20246.1| NOL1/NOP2/Sun domain family 6 [Mus musculus]
 gi|148676131|gb|EDL08078.1| NOL1/NOP2/Sun domain family 6, isoform CRA_c [Mus musculus]
          Length = 476

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E I   P F        ++Q+  +++   +        +LD+CAAPGGKT      +   
Sbjct: 200 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++ KL+ N   L L++      DA                    + FD 
Sbjct: 260 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +++DAPCS  G   + P++  T    ++      QRKLL   +  +KPGG++V+S C++ 
Sbjct: 320 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P          +   L+ E   ++     +        
Sbjct: 377 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 433

Query: 430 MD---------------------GFFAVALRR 440
           MD                     GFF     +
Sbjct: 434 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 465


>gi|19344072|gb|AAH25622.1| Nsun6 protein [Mus musculus]
          Length = 362

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E I   P F        ++Q+  +++   +        +LD+CAAPGGKT      +   
Sbjct: 86  EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 145

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++ KL+ N   L L++      DA                    + FD 
Sbjct: 146 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 205

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +++DAPCS  G   + P++  T    ++      QRKLL   +  +KPGG++V+S C++ 
Sbjct: 206 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 262

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P          +   L+ E   ++     +        
Sbjct: 263 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 319

Query: 430 MD---------------------GFFAVALRR 440
           MD                     GFF     +
Sbjct: 320 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 351


>gi|321458018|gb|EFX69093.1| hypothetical protein DAPPUDRAFT_329423 [Daphnia pulex]
          Length = 725

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 110/325 (33%), Gaps = 72/325 (22%)

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            LT   +   W   L    +      +K     +        G    Q+  + IP  +  
Sbjct: 102 CLTWYPENLAWQLSLTRKDIRKSEANVKLHNFLVSETEA---GNISRQETVSMIPPLVLD 158

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKV---------TALDVSKRRLEKLRCNLDRLHLY 289
              +  VLD+CAAPG KT+QL+                A D + +R   L   L RL   
Sbjct: 159 VQPHHKVLDMCAAPGSKTSQLVEMLHCDEGKAPEGLVIANDSNNKRCYLLTHQLKRLPSP 218

Query: 290 AEDIIEMDAFDYCPKK-----------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
              I   DA                   FD +L D PCS  GT+R++ DV    ++ +  
Sbjct: 219 NLIITNHDASLMPNFHIPTPGGGKDVLKFDRILCDVPCSGDGTLRKNLDVWMKWNSANGS 278

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---- 394
                Q ++  +G   +  GG +V+S CSL+  ++E V+ ++L  +   +EL  ++    
Sbjct: 279 SLHGLQYRIARRGAEMLSVGGKMVYSTCSLNPMENEAVIHRLLVEAKGSLELEEVSGKLP 338

Query: 395 -------------------------------------SAYWKSIDMAMALSPEGWIRITP 417
                                                S +    + A     E  +RI P
Sbjct: 339 GLKYVPGLSHWVVMSRVLTAYATPEEVPEAMKHILRGSLFPPKPEDADKFHLERCLRILP 398

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
                         GFF  AL+++ 
Sbjct: 399 H--------QQNTGGFFVSALKKVA 415


>gi|163792970|ref|ZP_02186946.1| NOL1/NOP2/sun family protein [alpha proteobacterium BAL199]
 gi|159181616|gb|EDP66128.1| NOL1/NOP2/sun family protein [alpha proteobacterium BAL199]
          Length = 292

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 121/263 (46%), Gaps = 11/263 (4%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
                L  +        +     +I +    A G  +V +AS+ +P        +  +LD
Sbjct: 30  EALTDLEPIGWCPDAFHIVGDKRAITASAPHAAGEVYVMNASSLVPALALDPQPDQDILD 89

Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD--RLHLYAEDIIEMDAFDYC 302
           +C+APGGK A +    V+ A++   D  K RL KL+  ++   +++ A         D  
Sbjct: 90  VCSAPGGKAAHIGALTVNQARLWVNDGIKSRLRKLQEVIELLNVNVTAVTEHPGQYLDKF 149

Query: 303 PKKLFDAVLVDAPCSSTGTIR-RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            ++ FD +L+DA CS  G       D L     + + + +  Q+++L+     ++PGGI+
Sbjct: 150 VEETFDRILLDAQCSGEGMADLSRSDALRFWTPERVEQMSRLQQRMLVASFKRLRPGGIL 209

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C++  +++E  V  ++R +P  V + P++ A  +++     L+        P +  
Sbjct: 210 VYSTCTVSPEENEAPVDHLVRHNPSAV-IEPIDLAIPEAVP---GLTRWEKRDYDPSLAN 265

Query: 422 KIDGVSSG-MDGFFAVALRRLIQ 443
            +  V+   M+ FF   +R++ Q
Sbjct: 266 ALRVVAGPFMEAFFVCRIRKVEQ 288


>gi|156085721|ref|XP_001610270.1| sun-family protein [Babesia bovis T2Bo]
 gi|154797522|gb|EDO06702.1| sun-family protein, putative [Babesia bovis]
          Length = 368

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 146/456 (32%), Gaps = 112/456 (24%)

Query: 4   GMNARLV-----SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           G+NA+       +  + + +    + +   L   +  +    ++   +  +   V    R
Sbjct: 3   GINAQRAKYLENALEVYTKLNTGVLPIDTFLKYYFKVNR---IAPGSRAWIAEHVYEVQR 59

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
           +      ++  +    +                                           
Sbjct: 60  WKG----LIAHLSPKPVT------------------------------------------ 73

Query: 119 HFAKLVNSILRRVSREKIELLQ--RIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
            +  ++N+ L       +   +          PE   +R+   YG ++ L I        
Sbjct: 74  -WTGILNTYLLHPRWRYMTGHKGLPEYLRCSFPEPLFDRIARQYGNDKALEICQVLNEEP 132

Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227
              L V       +     L    +P           L     +++  P + +G+  +QD
Sbjct: 133 VTYLRVNTLRTSRDKAYRALLHKGVPVEKCADSPCGLLVTSKRALLESPEYHKGIVEIQD 192

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLD 284
            S+ I      T     VLD CA  GGK       + +  ++   DV++  L K+     
Sbjct: 193 LSSQICGLKVETQPGEHVLDYCAGSGGKALVFGPKMENKGRIYLHDVNENLLNKVH---W 249

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           R  + A                 D V+VD PCS  G  RR+PD  WT   DDI      Q
Sbjct: 250 RSIMTAYY------------GKMDWVVVDVPCSGIGAYRRNPDRKWTFRIDDISNYTATQ 297

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           R ++   + F+KP G +V+  CS+ ++++E  +  + +   +     P            
Sbjct: 298 RTIVDNALLFLKPTGKLVYITCSIFEEENELQMNYMCKKHGLMHAQPP------------ 345

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   +++           S GM+G++   L+R
Sbjct: 346 -------TMQL---------PQSRGMNGYYIAILQR 365


>gi|253570666|ref|ZP_04848074.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 1_1_6]
 gi|251839615|gb|EES67698.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 1_1_6]
          Length = 492

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 120/311 (38%), Gaps = 20/311 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGI 203
             +P  F +      G E    ++ A        I +      E     L          
Sbjct: 1   MNLPASFIDYTRALLGNEEYEKLAAALQQEPPVSIRINKLRMKEEGLSSLTDSSARFSFN 60

Query: 204 RLKELPES--------IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPG 253
           ++    +             P F  G ++VQ+AS+    Q+      + + +LDLCAAPG
Sbjct: 61  KVPWASDGYYLDERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYVESPVVMLDLCAAPG 120

Query: 254 GKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309
           GK+         G+ + A +V + R + L  NL +       +   D  D+      FD 
Sbjct: 121 GKSTHARSVLPEGSLLVANEVIRNRSQVLAENLTKWGHPDVVVTNNDPADFSALPSFFDV 180

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  G  R+ P  +     +++      QR+++      +KPGGI+++S C+ +
Sbjct: 181 ILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWPCLKPGGILIYSTCTYN 240

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
            ++ EE V  +        EL+PL      +I   +    +   R     +       + 
Sbjct: 241 SKEDEENVCWI--QQEFGAELLPLEVQDEWNITGNLLDGEDESQRSL--SVCHFLPHKTK 296

Query: 430 MDGFFAVALRR 440
            +GFF  ALR+
Sbjct: 297 GEGFFLAALRK 307


>gi|210617211|ref|ZP_03291455.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787]
 gi|210149412|gb|EEA80421.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787]
          Length = 177

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 73/177 (41%), Gaps = 12/177 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +N R +   +L  V R        L      + ++ L ++++  +  +   TL  +
Sbjct: 1   MTKSINERELVLGILLEVTRDGEHSHIALRNVL--NKYQYLDKKERAFITRVTEGTLERM 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D +++      + + K  ++ ++R +V Q+ Y+D V + A  + AV+ A + K   +
Sbjct: 59  IELDYIINQFSKVKVNKMKPVIRNIIRSAVYQMKYMDSVPNSAACNEAVKLAVK-KGFVN 117

Query: 120 FAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAI 168
               VN +LR + R   ++            +    +P W   +    Y +E V  +
Sbjct: 118 LKGFVNGLLRNIDRNLEQISYPDEKDLEQYLSVKYSMPTWILRQWLAAYDRESVECM 174


>gi|298385090|ref|ZP_06994649.1| NOL1/NOP2/sun family protein [Bacteroides sp. 1_1_14]
 gi|298262234|gb|EFI05099.1| NOL1/NOP2/sun family protein [Bacteroides sp. 1_1_14]
          Length = 492

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 28/315 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGI 203
             +P  F +      G E    ++ A        I +      E     L          
Sbjct: 1   MNLPASFIDYTRALLGNEEYEKLAAALQQEPPVSIRINKLRMKEEGLSSLTDSSAHFSFN 60

Query: 204 RLKELPES--------IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPG 253
           ++    +             P F  G ++VQ+AS+    Q+      + + +LDLCAAPG
Sbjct: 61  KVPWASDGYYLDERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYVESPVVMLDLCAAPG 120

Query: 254 GKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309
           GK+         G+ + A +V + R + L  NL +       +   D  D+      FD 
Sbjct: 121 GKSTHARSVLSEGSLLVANEVIRNRSQVLAENLTKWGHPDVVVTNNDPADFSALPSFFDV 180

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  G  R+ P  +     +++      QR+++      +KPGGI+++S C+ +
Sbjct: 181 ILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWPCLKPGGILIYSTCTYN 240

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWI---RITPDMLEKIDG 425
            ++ EE V  + +     +  + + + +  + ++       +G +      P   +    
Sbjct: 241 SKEDEENVCWIQQEFGAELLPLEVRNEWNITGNLLDGEDESQGSLSVCHFLPHKTKGE-- 298

Query: 426 VSSGMDGFFAVALRR 440
                 GFF  ALR+
Sbjct: 299 ------GFFLAALRK 307


>gi|29347452|ref|NP_810955.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339352|gb|AAO77149.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 492

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 28/315 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGI 203
             +P  F +      G E    ++ A        I +      E     L          
Sbjct: 1   MNLPTSFIDYTRALLGNEEYEKLAAALQQEPPVSIRINKLRMKEEGLSSLTDSSAHFSFN 60

Query: 204 RLKELPES--------IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPG 253
           ++    +             P F  G ++VQ+AS+    Q+      + + +LDLCAAPG
Sbjct: 61  KVPWASDGYYLDERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYVESPVVMLDLCAAPG 120

Query: 254 GKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309
           GK+         G+ + A +V + R + L  NL +       +   D  D+      FD 
Sbjct: 121 GKSTHARSVLSEGSLLVANEVIRNRSQVLAENLTKWGHPDVVVTNNDPADFSALPSFFDV 180

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  G  R+ P  +     +++      QR+++      +KPGGI+++S C+ +
Sbjct: 181 ILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWPCLKPGGILIYSTCTYN 240

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWI---RITPDMLEKIDG 425
            ++ EE V  + +     +  + + + +  + ++       +G +      P   +    
Sbjct: 241 SKEDEENVCWIQQEFGAELLPLEVRNEWNITGNLLDGEDESQGSLSVCHFLPHKTKGE-- 298

Query: 426 VSSGMDGFFAVALRR 440
                 GFF  ALR+
Sbjct: 299 ------GFFLAALRK 307


>gi|319903071|ref|YP_004162799.1| Fmu (Sun) domain protein [Bacteroides helcogenes P 36-108]
 gi|319418102|gb|ADV45213.1| Fmu (Sun) domain protein [Bacteroides helcogenes P 36-108]
          Length = 481

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 18/235 (7%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269
           P F  G ++VQ+A++    Q          + +LDLCAAPGGK+         G+ + A 
Sbjct: 76  PLFHAGCYYVQEAASMFVEQALRQYVSDSPVVMLDLCAAPGGKSTHTRSLLPEGSLLVAN 135

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDV 328
           +V + R + L  NL +       +   D  D+ P K  FD +L D PCS  G  R+ P  
Sbjct: 136 EVIRNRSQVLAENLIKWGHPDVVVTNNDPADFAPLKDFFDVILADVPCSGEGMFRKDPVA 195

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           +     +++      QR+++      +KPGGI+++S C+ + +++EE ++ +     +  
Sbjct: 196 VSEWSLENVEICWQRQRRIISDIWPCLKPGGILLYSTCTYNVKENEENIRWM--RDKLGA 253

Query: 389 ELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           E++PL  SA W      +A       R  P   +          GFF   +++  
Sbjct: 254 EVLPLETSADWNITGNLLASEEFPVYRFLPHKTKGE--------GFFLAVVQKKA 300


>gi|119590099|gb|EAW69693.1| hCG39703, isoform CRA_b [Homo sapiens]
          Length = 308

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 110/271 (40%), Gaps = 23/271 (8%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D+     K   +      + +      +   P +  G   +QD ++ +P  L        
Sbjct: 12  DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 71

Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L R  +   ++ E D    
Sbjct: 72  VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 131

Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISF- 354
            P          +L+D  CS +G   R  +     T     +   A FQ++ L   ++F 
Sbjct: 132 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 191

Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++    +V+S CSL ++++E+VV+  L+ +P    L P   A W    ++     E  +
Sbjct: 192 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 247

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           R +P+             GFF   + R+  P
Sbjct: 248 RASPETTLSS--------GFFVAVIERVEVP 270


>gi|66362754|ref|XP_628343.1| Ncl1p/MJ0026/YebU-like.  SUN family RNA methylase [Cryptosporidium
           parvum Iowa II]
 gi|46229784|gb|EAK90602.1| Ncl1p/MJ0026/YebU-like.  SUN family RNA methylase [Cryptosporidium
           parvum Iowa II]
          Length = 713

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 121/352 (34%), Gaps = 66/352 (18%)

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210
                L  F        + +         L+    +  +     +  +     +L +L  
Sbjct: 111 HPLHSLLEFLLNAETEKLYNNNAIFNLKRLSKNCKL--YLITEYSRKMLKKESQLAKLHS 168

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------- 259
            IVS   F  G    Q+  + +P           VLDLC+APG K+ Q+           
Sbjct: 169 FIVSQDEF--GTLSSQELVSMLPCICLDPKPGHFVLDLCSAPGSKSTQILDMILSSRDDQ 226

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKL 306
                    +   DVS +RL+ L   L R+      I  +DA  +               
Sbjct: 227 LGIACKKGLLICNDVSSKRLDTLSSRLSRIPSPNVLITCIDASFFPTFKPSKTTITSPFQ 286

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +LVD+ CS  GT+R++PD+      +  +     Q  LL +    +K GG +V+S C
Sbjct: 287 FDRILVDSICSGDGTLRKNPDIWTIWKPEKALSLHKKQVSLLSRAFKLLKNGGKLVYSTC 346

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--------WKSIDMAMALSPEGWIRI--- 415
           SL+  ++E V+  +LR  P    + P N            ++  +   L  +  +++   
Sbjct: 347 SLNPIENEAVISTLLRKFPDAKLISPTNLDEREFEISKGLRTWGVHFELKEQNKLQLFDT 406

Query: 416 -----------------TPDM----------LEKIDGVSSGMDGFFAVALRR 440
                             PD             ++    +   GFF   +++
Sbjct: 407 LDEVPDTPFKEKLTESMFPDKEWYESDNFMRCFRVLPHRNDTGGFFFAVVQK 458


>gi|170048588|ref|XP_001853367.1| tRNA methyltransferase [Culex quinquefasciatus]
 gi|167870650|gb|EDS34033.1| tRNA methyltransferase [Culex quinquefasciatus]
          Length = 685

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 101/282 (35%), Gaps = 69/282 (24%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---------SGAKVTALDVSK 273
              Q+A + IP  +     +  VLD+CAAPG KTAQLI              V A D+  
Sbjct: 161 ISRQEAVSMIPPLVLSVEPHHKVLDMCAAPGSKTAQLIEALHAGGDALPTGFVMANDIDN 220

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTGTI 322
            R   L     RL   +  ++  D+  +                +D +L D PCS  GT+
Sbjct: 221 NRCYMLVHQAKRLASASCLVVNADSSVFPSLKVKNEAGELVPLKYDRILCDVPCSGDGTL 280

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+  +L 
Sbjct: 281 RKNPDIWTKWNMGHACNLHGLQYRIVKRGAELLEVGGKLVYSTCSLNPIENEAVLHHLLA 340

Query: 383 SSPIPVELVPLNSA-----------------------------------------YWKSI 401
            +   +E+V  +                                           +  + 
Sbjct: 341 ETGDAMEIVDASHLVPTLKHSPGMTYWEPATKDMKFYKSFAEVPENYRTVIRPLMFPPAP 400

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +     + +  IR+ P              GFF   L +  +
Sbjct: 401 EDVAKFNLDRCIRVLPH--------QQNTGGFFIALLEKKKK 434


>gi|41615084|ref|NP_963582.1| hypothetical protein NEQ295 [Nanoarchaeum equitans Kin4-M]
 gi|40068808|gb|AAR39143.1| NEQ295 [Nanoarchaeum equitans Kin4-M]
          Length = 290

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 15/244 (6%)

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TA 257
              ++K+ P  + +LP +  G+ ++Q+ S+++PV          +LD+ AAPGGK     
Sbjct: 56  YFYKIKKAPFHLQALPEYILGLIYIQNPSSALPVFALSPRKKDIILDMAAAPGGKSSLIQ 115

Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           QL  + + + +++    R +K+R   DRL++ A  I   DA     K+ F  +L+DAPCS
Sbjct: 116 QLTNNQSILYSVEKDPFRAKKMRFIFDRLNVRAVII-NEDALKLPFKEEFKKILLDAPCS 174

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           +   I +      ++  +D +     Q++L+ +    +KP GI+V+S C+L+  ++E V+
Sbjct: 175 ANPYIDK---TFISKTIEDFINRQTIQKQLIKKAYEMLKPNGILVYSTCTLEPLENEFVI 231

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAV 436
           +  L      V           S +        +   RI P +    +        FF  
Sbjct: 232 EYALSLGFKIVNANLFGEPALTSFENHEFPKEMQYCKRIYPHIHYGFEP-------FFYC 284

Query: 437 ALRR 440
            L++
Sbjct: 285 VLKK 288


>gi|198426740|ref|XP_002131278.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 418

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 161/450 (35%), Gaps = 48/450 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           M     +  +L+ V   + S+   +   ++ +             + A+V  TL++   +
Sbjct: 1   MALYKSAEDVLNQVEAYKSSVKKAVFSTKFRNPKQ----------LCALVMETLKYKAVL 50

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           + VL       +   K   + +    +      D      +    +  K  K  +     
Sbjct: 51  EDVLQQ--TKLIQNTKGISRNIALPLLY-----DFLIGKGIRCGGKFKKLIKTRKSAINA 103

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
             + ++   +              +P    + L           + +      +  +   
Sbjct: 104 AFARIKLKKKVSKTEDLVEKSNFTLP----KYLRVNTLLTTTTKVMETLNKDGFTRVD-- 157

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
             +     K  +       + +            +  G    QD S+ +P  +     N 
Sbjct: 158 CSVNEIVEKQFSSDPDIPNLLVFHFSTDFHDHGLYKLGHLIFQDKSSCMPAFVLNPSPNS 217

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D CAAPG KT+    ++ +  K+ A+D S  R+E ++  L +  +   ++I  D   
Sbjct: 218 HVIDACAAPGNKTSHLSAIMNNTGKLFAIDRSSERIEVMKKQLKKASVKNCEVINSDFLI 277

Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRR---HPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
             P     K  + +LVD  C+ +G I R   H +   ++ +  +   + FQ K+L   +S
Sbjct: 278 LKPTDEKFKQVEYILVDPSCTGSGIISRQLEHTEEKDSKCSKRLESLSKFQLKVLNHALS 337

Query: 354 F--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           F  VK    VV+S CS+ ++++E +V+  +  +    +L  +   +     ++ + + E 
Sbjct: 338 FPNVK---RVVYSTCSIHEEENELIVKLAVEQNSN-FDLKKVLPKWHNRGLISDSFNAEK 393

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +R  P++           +GFF     + 
Sbjct: 394 CVRCDPNVDF--------TNGFFVALFEKK 415


>gi|167758121|ref|ZP_02430248.1| hypothetical protein CLOSCI_00459 [Clostridium scindens ATCC 35704]
 gi|167664018|gb|EDS08148.1| hypothetical protein CLOSCI_00459 [Clostridium scindens ATCC 35704]
          Length = 479

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 25/313 (7%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-------KLNAV 196
            I  +P  F+E++     +E    I      P Y  L V     T          ++  +
Sbjct: 19  WIMNLPSAFEEKMRGLLQEEFDEYIDCY-EEPRYYGLRVNTAKITVEEFERICPFEITPI 77

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                G        +    P +  G++++Q+ SA  P           VLD+CAAPGGK 
Sbjct: 78  PWIENGFYYDGENVAPAKHPYYFAGLYYLQEPSAMTPASRLPVEPGDKVLDVCAAPGGKA 137

Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVL 311
            +    +     + A D+S  R + L  N++   +    +   E    +    + FD +L
Sbjct: 138 TELGARLKGQGMLVANDISSSRAKGLLKNMEVFGIGNMLVLSEEPGRLEQYFPEYFDKIL 197

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           +DAPCS  G  R+   ++   +       +  Q+ ++LQ    +KPGG++++S C+ D +
Sbjct: 198 IDAPCSGEGMFRKDKKMVKAWEEHGPEFFSNIQKNIILQAARMLKPGGMMLYSTCTFDGR 257

Query: 372 DSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVS 427
           ++E +++ +  S P    +++ P +         +    PE    +RI P  ++      
Sbjct: 258 ENERIIEHLKESCPEFQILKISPYSGFCQGMPQCSENNDPELAKTVRIFPHRMKGE---- 313

Query: 428 SGMDGFFAVALRR 440
               G +   LR+
Sbjct: 314 ----GHYLALLRK 322


>gi|167539930|ref|XP_001741422.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894124|gb|EDR22208.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 511

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 35/246 (14%)

Query: 217 GFAEGVWWVQDASASIPV----QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS 272
                  + Q+  +  P      L    +  +VLD+CAAPG KT+QL+ +   VTA DV 
Sbjct: 91  AVERNYCYRQELCSMFPPLVIESLINKYHINTVLDICAAPGSKTSQLVENKILVTANDVD 150

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            +R++ L   L+           +D      K  +D +L DAPCS  GT+R+  +  +  
Sbjct: 151 PKRVQILAHRLNCWGNVNILNCSIDQI----KGKYDCILCDAPCSGDGTLRKSSNPWFKW 206

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                 ++   Q K++ + +  +   GI+++S CS++  + E V+  +L+     +EL+ 
Sbjct: 207 KLTTSFENHRIQLKIVRESLKHLNENGIIIYSTCSMNPIEDEAVIHSILKEFQGSIELID 266

Query: 393 LNSAYWKSI-------------------DMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           ++S                                 E  +RI P              GF
Sbjct: 267 IHSIIPNGRNGVSIWKKYDTINCPVTSYPPLEEYHLERCVRIFPQDY--------NSGGF 318

Query: 434 FAVALR 439
           F  ALR
Sbjct: 319 FIAALR 324


>gi|152990425|ref|YP_001356147.1| tRNA/rRNA cytosine-C5-methylase [Nitratiruptor sp. SB155-2]
 gi|151422286|dbj|BAF69790.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family
           [Nitratiruptor sp. SB155-2]
          Length = 298

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 109/303 (35%), Gaps = 21/303 (6%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
             +++     ++   +I +   +       +     +    +  +       R  E    
Sbjct: 1   MNQKIFEERIRKIEPSILELLHTKKSFSFRINHHRASTQEAIELLEQEGYHPRKVEWAND 60

Query: 212 IVSLP-----------GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
           +  LP            + + + ++Q+ S+              VLDL AAPGGK+    
Sbjct: 61  VFELPIEHRKSIVKSSAYTQNMIYIQNLSSIFSAYSIDIDPEDWVLDLAAAPGGKSLIFS 120

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSS 318
               KV+A++  K R  +++ N              D           FD V +DAPCSS
Sbjct: 121 ERAKKVSAVEPDKGRFFRMKRNFKEHMAKNIQTYNKDGRFIYKSCPGWFDKVFLDAPCSS 180

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
              I          +   + K A  Q++L++     +KPGG +++S C+   +++E VV 
Sbjct: 181 EAHIDGEVT---WWNVRRVRKFAKLQKELIVSAYESLKPGGQMIYSTCTFAPEENEAVVD 237

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG-MDGFFAVA 437
            +++  P    +            ++     E      PD+ + +  +  G   GFF   
Sbjct: 238 FLIKKYPEAQVMEVEVPFSNWMRGLSEWEEKE----FHPDVAKTVRILPKGAYSGFFMAK 293

Query: 438 LRR 440
           + +
Sbjct: 294 IMK 296


>gi|306833544|ref|ZP_07466671.1| NOL1/NOP2/sun family protein [Streptococcus bovis ATCC 700338]
 gi|304424314|gb|EFM27453.1| NOL1/NOP2/sun family protein [Streptococcus bovis ATCC 700338]
          Length = 436

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 25/244 (10%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
              P    G+ + Q+ +A +  Q+     N+ VLDL AAPGGK+      + +   + + 
Sbjct: 63  GKSPEHVSGLVYSQEPAAQMVAQVAAPQENMRVLDLAAAPGGKSTHLLSYMNNTGVLVSN 122

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPD 327
           ++S +R + L  N++R       +    +       K  FD ++ D PCS  G  R+   
Sbjct: 123 EISSKRSKVLVENIERFGARNVVVTNESSQKLSKVFKDYFDLIVFDGPCSGEGMFRKDSS 182

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                  D   + A  Q+++L + +  +  GG +V+S C+   +++E VV+ +L      
Sbjct: 183 ATQYWHEDYPAECAVLQKEILEEAMKMLAIGGTLVYSTCTWSPEENEGVVKWLLDKY-DY 241

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR-------R 440
           +ELV +         + M               +            F   LR       R
Sbjct: 242 LELVDIEKINGMVEGIDMPQVARMCS----HHFKGEGQ--------FVAKLRDTRMPEAR 289

Query: 441 LIQP 444
            ++P
Sbjct: 290 SVKP 293


>gi|291288877|ref|YP_003505693.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290886037|gb|ADD69737.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 441

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 112/264 (42%), Gaps = 17/264 (6%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           ++     +L+         +++   + +    GF  G +++ + S+         L    
Sbjct: 46  ELAEMGVELSEAEGLPKVYKVESGEDKLTGSIGFQTGGFYIMNPSSVFAADTLCRLMPDY 105

Query: 245 VL--DLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
               D+ +APGGKT  +     +   + A + S +R++ L+ N+++   Y+   I  D  
Sbjct: 106 PYILDVASAPGGKTCAIADLLGNRCAIIANEPSGKRMKSLQFNIEKYGAYSVRTIGKDGR 165

Query: 300 --DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD +L+DAPCS+   I R+  V      + + + A  Q+++       +K 
Sbjct: 166 NLHKTFDRFFDGILLDAPCSNENKIGRNKTVNSEWCQELVERMAKLQKEIASSAFETLKE 225

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG++V+S C+   +++EEV++ +L +     ELV +N                  +R  P
Sbjct: 226 GGVMVYSTCTFSVEENEEVIRHILDNF--DCELVDINRGEHTGGLSGDGSIDPYVVRYMP 283

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
                    +   DGFF  A+RR 
Sbjct: 284 H--------TDIYDGFFISAVRRK 299


>gi|149412200|ref|XP_001509484.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 466

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 32/263 (12%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F     G  ++Q+  +++   + G      +LD+CAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPGYLFLQNLPSAVASHVLGPQPGERILDMCAAPGGKTTHIAALMEDR 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++EK++     L L        D                   P + FD 
Sbjct: 260 GEVIALDKIANKVEKIKQTAKLLQLNCIKAFCYDGTKALAQGKTEAGRGEPPFPPETFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  T    ++      QR+LL   +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGLG---QRPNMACTWTLKEVTSYPPLQRRLLAVAVELLKPGGVLVYSTCTVT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---TPDMLEKIDGV 426
             ++EE V   L + P  ++L+P              LS E   R+    P  +     +
Sbjct: 377 LAENEEQVAWALDTFPC-LQLLPQEPHLGDEGMAGAGLSQEQRHRLQRFDPAAVPAEGPI 435

Query: 427 S---SGMDGFFAVAL--RRLIQP 444
                   GFF  +   RR   P
Sbjct: 436 RRANQDCIGFFIASFAKRRTASP 458


>gi|296206262|ref|XP_002750130.1| PREDICTED: putative methyltransferase NSUN6 [Callithrix jacchus]
          Length = 468

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 103/269 (38%), Gaps = 42/269 (15%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-------------AFDYCPKKLFDAV 310
            +V ALD    ++EK++ N   L L +      D                    + FD +
Sbjct: 260 GEVIALDKIFNKVEKIQQNASLLGLNSIRAFCFDGTKAVKLDMVDTEEEPPFLPETFDRI 319

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS  G   + P++  T    ++      QRKL    +  +KPGG++V+S C++  
Sbjct: 320 LLDAPCSGMG---QRPNMACTWSLKEVTSYQPLQRKLFTVAVQLLKPGGVLVYSTCTITL 376

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---------TPDMLE 421
            ++EE V   L   P  ++L P              LS E   ++          PD   
Sbjct: 377 AENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDV 435

Query: 422 KIDGVSSGMD----------GFFAVALRR 440
                +   D          GFF     +
Sbjct: 436 DSLRETRREDMLRLANKDSIGFFIAKFVK 464


>gi|291534144|emb|CBL07257.1| Transcription termination factor [Megamonas hypermegale ART12/1]
          Length = 116

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MNAR V+ ++L+ V  ++      L      +    LS +D+  +  +V  T++    + 
Sbjct: 1   MNAREVALNILNEVYTQQAYANISLSRHLQKNQ---LSDQDRRFITELVYGTVKAGDTLL 57

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
            +L   +   L + + ++  +LR+ + QI+++D + + A  + AV  AK
Sbjct: 58  WILKKFVNRPLNKIEPTIINILRLGIYQIVFMDKIPESAACNEAVNLAK 106


>gi|262383712|ref|ZP_06076848.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_33B]
 gi|262294610|gb|EEY82542.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_33B]
          Length = 465

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           E    +  A  + + + + +     T A K  A +             S    P F  G 
Sbjct: 17  EEFDRLEAALSADVPVSIRINPMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76

Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277
           ++VQ+AS+    Q         +  LDLCAAPGGK+  L      G+ + + +V + R  
Sbjct: 77  YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N+ +       +I  D  +        FD ++ D PCS  G  R+  D       D
Sbjct: 137 VLAENIAKWGRPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++   A   R+++    + +KPGGI+++S C+ + ++ EE +  ++         +P   
Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +  +          R  P              GFF  ALR+
Sbjct: 257 EWQITDALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290


>gi|333029203|ref|ZP_08457264.1| Fmu (Sun) domain protein [Bacteroides coprosuis DSM 18011]
 gi|332739800|gb|EGJ70282.1| Fmu (Sun) domain protein [Bacteroides coprosuis DSM 18011]
          Length = 478

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 122/307 (39%), Gaps = 22/307 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET-----WAHKLNAVMLPT 200
             +P  F  + ++  G      +S+A   P  I + +  +         +  +   +   
Sbjct: 1   MNLPPQFITQTQSLLGDVEWQKLSEALEEPQPISIRLNQNKIDKYGICLSQDIFESIPWC 60

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG---TLNNLSVLDLCAAPGGKTA 257
                     +    P F  G ++VQ+AS+    Q+        N+  LDLCAAPGGKT 
Sbjct: 61  ESGFYLSARPTFTYDPLFHSGAYYVQEASSMFIEQIVKQHLPHKNIVALDLCAAPGGKTT 120

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVD 313
            L     S + + A ++ ++R + L  NL +       +    + D+     +FD ++ D
Sbjct: 121 LLRSLLPSNSLLIANEIVRKRAQILSENLLKWGHPDVIVTNNSSEDFSEYTNMFDLIVAD 180

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  G  R+    +     +++      QR ++      +KPGG++++S C+ + +++
Sbjct: 181 VPCSGEGMFRKDEGAIAEWSVENVDVCWKRQRDIISSIWHSLKPGGLLIYSTCTYNTKEN 240

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           EE V  +L +       V +  ++  +  +          R  P   +          GF
Sbjct: 241 EENVAWILDTYGAQSLPVQIEDSWNITRSLYSKTL--NTYRFMPHKTKGE--------GF 290

Query: 434 FAVALRR 440
           F   +++
Sbjct: 291 FVSIIQK 297


>gi|67478419|ref|XP_654608.1| tRNA (cytosine-5-)-methyltransferase [Entamoeba histolytica
           HM-1:IMSS]
 gi|56471669|gb|EAL49221.1| tRNA (cytosine-5-)-methyltransferase, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 511

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 35/246 (14%)

Query: 217 GFAEGVWWVQDASASIPV----QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS 272
                  + Q+  +  P      L    +  +VLD+CAAPG KT+QL+ +   VTA D+ 
Sbjct: 91  AVERNYCYRQELCSMFPPLVIESLINKYHINTVLDICAAPGSKTSQLVENNIFVTANDID 150

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            +R++ L   L+           +D      K  +D +L DAPCS  GT+R+  +  +  
Sbjct: 151 PKRVQILAHRLNCWGNINILNCSIDQI----KGKYDCILCDAPCSGDGTLRKSSNPWFKW 206

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                 ++   Q K++ + +  +   GI+++S CS++  + E VV  +L+     ++L+ 
Sbjct: 207 KLTTSFENHRIQLKIIRESLKRLNENGIIIYSTCSMNPIEDEAVVHSILKEFQGNIQLID 266

Query: 393 LNSAYWKSI-------------------DMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           ++                                + E  +RI P              GF
Sbjct: 267 IHHIIPNGRNGVSVWKKYDTINCPVTCYPPIEDYNLERCVRILPQDY--------NSGGF 318

Query: 434 FAVALR 439
           F  ALR
Sbjct: 319 FIAALR 324


>gi|326429758|gb|EGD75328.1| Nsun6 protein [Salpingoeca sp. ATCC 50818]
          Length = 477

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 41/260 (15%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
           G  +    +Q+  + +   +        V+D+CAAPGGKTA +   + +  ++TA + S 
Sbjct: 223 GHLDRSLVLQNLPSCVASHVLAPQPGEHVVDMCAAPGGKTAHIAALMNNTGRITAYERST 282

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------------------------PK 304
           +R   L   L+ + +    + +MDA   C                               
Sbjct: 283 KRCAALVQWLETVGVTCCSVFKMDARKCCLQALPQSSPSPSSSSLSSSSSQAVEKKKVQA 342

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
              D VL+DAPC+  G   +           D++++  FQ+KL    ++ +KPGG +V+S
Sbjct: 343 GSVDRVLLDAPCTGLGQRPKFEHATPL---TDVIEAPSFQKKLFRTAVALLKPGGTLVYS 399

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CS + +++E VV   L   P  +E+        ++      LS E   R+         
Sbjct: 400 TCSFNPEENEGVVAWALAEFPHDIEIAQQVPYIGEAGVQYEGLSEEARQRV----QRFTP 455

Query: 425 GVSSGMDGFFAVALRRLIQP 444
             +    GFF     +  +P
Sbjct: 456 SSTCDTIGFFIAKFIK--KP 473


>gi|94987286|ref|YP_595219.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731535|emb|CAJ54898.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 423

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 15/243 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIV 261
           +   P  +        G+ ++QD S+ +PV          +LD+CA+PG KT    QL+ 
Sbjct: 46  IIYEPFPLGKSLAAFFGLIYIQDRSSMLPVLALQANVGDIILDMCASPGSKTTLLSQLVG 105

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTG 320
           +   +   D +K RL  LR NL RL+ +        A     P   +  +L+D PCS  G
Sbjct: 106 NTGLIVGNDPTKSRLLTLRNNLGRLNCFNTVTCSWPAEKLPMPDATWGKILLDPPCSGWG 165

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           TI+++P V      + I      Q+KLL +    + PGG +V+S C+ +  ++E  +Q  
Sbjct: 166 TIKKNPQVTKIWQGERINPLIILQKKLLTEATRLLIPGGKIVYSTCTTNIDENEAQIQFA 225

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  + + ++L+PL      S+   ++ S EG IR+           +    GFF   L++
Sbjct: 226 I--TNLGLKLIPLELPLGFSVIKPISPSYEGVIRL---------PNTHDSQGFFIACLQK 274

Query: 441 LIQ 443
             +
Sbjct: 275 PGK 277


>gi|328868257|gb|EGG16635.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
          Length = 793

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 114/346 (32%), Gaps = 68/346 (19%)

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
           ++  I D     + +D  V    +  +   + +   +   +          L  F + + 
Sbjct: 127 QLHNIIDQLPEKMIVDGDVVEPPKPLSWYPDELAWHSTLTKRSFRKND--QLEAFHKFLM 184

Query: 224 WVQDAS--------ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------------LIVS 262
              +          + IP        +  VLD+CAAPG KT Q               + 
Sbjct: 185 HHNNEGNLTRQEAVSMIPPIFLDVEPHHLVLDMCAAPGSKTTQIIEALHANRSNSNTTIP 244

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP------------KKLFDAV 310
              + A D   +R   L     RL      I   +A  +                LFD +
Sbjct: 245 EGMIIANDADVKRCYMLVHQTARLGSPTIVITNHEAQIFPLLYLQKEGETERRPMLFDRI 304

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT+R++PD+       D       Q  +  +  + +K GG +V+S CSL+ 
Sbjct: 305 LADVPCSGDGTLRKNPDLWKRWKARDGAGLHRLQSHIAYRAANLLKVGGRMVYSTCSLNP 364

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAY-----------WKSIDMAMALSPE-------GW 412
            ++E V+ +++      V +V +++ Y           W  ID    +  +         
Sbjct: 365 IENEAVIMELVNRCQGAVRIVDVSAQYPTLIRANGLHTWPVIDKDREIYQDFSQVPETKK 424

Query: 413 IRITPD---------------MLEKIDGVSSGMDGFFAVALRRLIQ 443
             I P                   ++        GFF   L ++ +
Sbjct: 425 KTIFPSFFPPTEEQAQKAGLKHCMRVYPHMQDTGGFFITVLEKVAE 470


>gi|289422676|ref|ZP_06424516.1| tRNA and rRNA cytosine-C5-methylase [Peptostreptococcus anaerobius
           653-L]
 gi|289156855|gb|EFD05480.1| tRNA and rRNA cytosine-C5-methylase [Peptostreptococcus anaerobius
           653-L]
          Length = 472

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 46/298 (15%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
           F E+  +      +    +         + +  D   W+ +              +   +
Sbjct: 31  FDEKKTSAIRINTLKMTKERFEDLAMFSIDIDRDRIEWSDE----------SYYIDEETN 80

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTA 268
               P    G +++Q+ SA   V     +    +LD+CAAPGGK+  ++        + +
Sbjct: 81  PGKNPLHDAGAYYLQEPSAISVVGKSNIVPGERILDMCAAPGGKSTYILSKLGGRGLLVS 140

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHP 326
            +++K+R+  L  NL+R       I   D+       K  FD + +DAPCS  G  R+  
Sbjct: 141 NEINKQRVTSLGDNLERFGARNAIITNEDSKRLLTFFKGFFDKIYIDAPCSGQGMFRKDA 200

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             +       + + +  Q+ L+    + ++PGG +++S C+  K ++E+++   L    +
Sbjct: 201 YAIEDWSIAKVKECSNIQKDLIRDAYAMLRPGGSLIYSTCTFTKIENEDIINDFLGEYKM 260

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                                S +   RI P +            G F     R+ +P
Sbjct: 261 A--------------------SLDSMERIWPHIDRGE--------GHFCA---RISKP 287


>gi|57242344|ref|ZP_00370283.1| proliferating-cell nucleolar antigen P120, putative [Campylobacter
           upsaliensis RM3195]
 gi|57017024|gb|EAL53806.1| proliferating-cell nucleolar antigen P120, putative [Campylobacter
           upsaliensis RM3195]
          Length = 288

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 125/298 (41%), Gaps = 24/298 (8%)

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDI--ETWAHKLNAVMLPTGGIRLKELPES- 211
           +L   Y +  +  + ++  S   + + + F    E   ++L   +          L ++ 
Sbjct: 4   KLAQIYTQNELEILKESFKSAKNVCVFLNFLKTNEAMINELFKDLEFQRLNSFCYLFKAQ 63

Query: 212 ----IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264
               +  +  F EG +++Q+ S+ +  +  G   N S+LD+CAAPGGK+      + + A
Sbjct: 64  DKSILSKMKAFNEGHFYIQNYSSYLCARNLGVKPNESILDMCAAPGGKSINLANFMQNKA 123

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
            +  ++ +K R   L+ NL    + A   + +  +        FD +L+DAPCS+     
Sbjct: 124 YLACVEANKERFFTLQKNLKNYGVNAKIFLKDAKSIGRLCPLKFDKILLDAPCSTLAKTG 183

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
                   +   +I   A  Q+KLL   +  +K GG +V+S C+  ++++EEV++  L+S
Sbjct: 184 FENV----KSPKEIKALALLQKKLLHSALKALKHGGELVYSTCTFLREENEEVLENALKS 239

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L             +     +   RI P             DGFF   +R++
Sbjct: 240 EFELEFLELDLEGVIAKEAKSEFGELKKARRIMPC---------ENYDGFFIAKMRKI 288


>gi|210632641|ref|ZP_03297483.1| hypothetical protein COLSTE_01386 [Collinsella stercoris DSM 13279]
 gi|210159418|gb|EEA90389.1| hypothetical protein COLSTE_01386 [Collinsella stercoris DSM 13279]
          Length = 330

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 29/290 (10%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP-ESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
           V  D++        V      + + +     +  L  + +G  ++Q  S+ +P  L    
Sbjct: 41  VCRDLDARDIVYERVPWYDDALVVCDARERDLWELDIYRKGHIYLQSLSSMLPPLLLEPR 100

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               +LD+CAAPGGKTAQ+     + A +TA ++S  R EKL  NLD+L     +++  D
Sbjct: 101 AGADILDMCAAPGGKTAQIAALTGNAAHLTACEMSAPRAEKLAYNLDKLDAANVNVMRTD 160

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           A        FD +L+DAPC+ TGT R              + K    QR LL + ++ +K
Sbjct: 161 ARRLDEFFSFDQILLDAPCTGTGTYRAGDERAEKRMTPQLLAKVTKSQRALLDRALTVLK 220

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPI--------------PVELVPLNSAYWKSID 402
           PGG +V+S CS+  +++++ V+  L+                    +  P      K   
Sbjct: 221 PGGTLVYSTCSVLAEENDDQVRAALKRHRDCEVAPILLDAPTEMEADDQPERPRAAKDEV 280

Query: 403 MAMALSPEGW--IRITPDMLEKIDGVSSGM-------DGFFAVALRRLIQ 443
               L+  G   +R  P +  +     +         +GF+   +R+  +
Sbjct: 281 RPAILANAGSGPLRC-PALERECALAGTLTVAPTRLFEGFYVAVIRKKAR 329


>gi|71665951|ref|XP_819940.1| methyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70885263|gb|EAN98089.1| methyltransferase, putative [Trypanosoma cruzi]
          Length = 832

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 145/424 (34%), Gaps = 58/424 (13%)

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQIL--------YLDVADYAVVDLAVEQAKRDKENRH 119
                S+L +   +    L  ++AQ++          +V     +D      K   + R 
Sbjct: 87  APRSQSTLEKIDVTE---LCFAIAQVIAPVNVHERRRNVGSTEPLDENAPLIKYYSKGRF 143

Query: 120 FA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +  + VN+   ++  ++            +     ER       E         +    
Sbjct: 144 ASLLECVNTEDAQIEWQRFIACISSPLPMTLRVHRNERALKHIADE-------FLLHDPM 196

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           +   V          +            +   E I      A      Q+A + +PV + 
Sbjct: 197 LREVVHSVSPLLPPSIGLYGCSHAVYHTEPRVEYICRT-LHAASAVSFQEAVSVLPVMVA 255

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAK------------VTALDVSK-RRLEKLRCNLD 284
               + +VLD+CAAPG KT  ++    +                +  + +  + L   L 
Sbjct: 256 DIHPHHAVLDMCAAPGSKTLHVLDEMLQYGWSTSSVSQGVFFVNEKDRIKATQILPARLK 315

Query: 285 RLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R H         DA  +              +K FD ++ D PCS  GT+R+ P +  + 
Sbjct: 316 RFHAPNVICTRCDASQWPRLFYSFERGSSFAEKRFDRIICDVPCSGDGTVRKEPALASSW 375

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
               +      Q+ LL +G+  +K GGI+V+S CS++ ++ EEVV   L      VEL+ 
Sbjct: 376 SPGYVKSLVPTQKALLRRGLDLLKEGGILVYSTCSMNPKEDEEVVCAGLELFGDTVELLD 435

Query: 393 LNSAYWKSIDMAMALS-------PEGWIRITPDMLE-----KIDGVSSGMDGFFAVALRR 440
           +N+   +   +  ++         +  I   P   +     ++        GFF  A R+
Sbjct: 436 VNAILREKGALLHSVGGILSPNVDQLQIATLPLTFDGRKVLRVLPHRDDTGGFFVAAFRK 495

Query: 441 LIQP 444
              P
Sbjct: 496 RSLP 499


>gi|300173481|ref|YP_003772647.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887860|emb|CBL91828.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 485

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 96/255 (37%), Gaps = 41/255 (16%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
            + Q+ SA    +         +LDL AAPGGKT      +     + + ++   R + L
Sbjct: 78  VYSQEPSAQFVGETVRPEPGERILDLAAAPGGKTTHLAAFMQQKGLLWSNEIFLNRAKIL 137

Query: 280 RCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             N++R+ L                  + FD +L+DAPCS  G  R++   +     D  
Sbjct: 138 SENVERMGLQNSVVSSHTPAELSVKLPQYFDKILLDAPCSGEGMFRKNITAIKQWHKDFP 197

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSA 396
            + A  QR++L + +  ++PGG +++S C+   ++ E+++  ++   P   ++ +     
Sbjct: 198 QELAELQREILHEAVKMLRPGGQIIYSTCTFSPEEDEQMIAWLMSEYPEFTLKAINKPQD 257

Query: 397 YWKSIDMAMALSPE------------------GWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + S         +                     R+ P  L          +G F   L
Sbjct: 258 TYISDGQPAWADKQFTDGQVDQSKTIDQEVLKKTARLWPQRL--------NGEGHFVAKL 309

Query: 439 RR---------LIQP 444
            +         +++P
Sbjct: 310 EKSPNVPLSDHIVKP 324


>gi|256851169|ref|ZP_05556558.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660593|ref|ZP_05861508.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
           115-3-CHN]
 gi|256616231|gb|EEU21419.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548315|gb|EEX24290.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
           115-3-CHN]
          Length = 461

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 15/297 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           +P+ FK++ +     ++  +   A  +       +      +      +  P  G+    
Sbjct: 6   LPKEFKDKYQKLLA-KKADSFFTALEAEPKKAFRLNPLKADYQEVSYDLSKPVDGVADAY 64

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
             E       +  G  + QD SA  P +  G      VLDLCAAPGGK+      + +  
Sbjct: 65  YGEISGRDIEWVSGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNKG 124

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR N++R       +   D      K    FDA+LVDAPCS  G  
Sbjct: 125 LLVANEISTSRAKNLRENIERWGADNCLVTNEDTSHLAQKFPRFFDAILVDAPCSGEGMF 184

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ D +     + +++ +  Q+++L + +  +KPGG +++S C+   ++ EE+   ++ 
Sbjct: 185 RKNHDAVTYWSQEYVLECSNRQKEILNEAVKMLKPGGSLLYSTCTYAPEEDEEICAYLVN 244

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                +    ++ A          L   E   R  P+               F    
Sbjct: 245 ELGFKLVETKVSVASQGVPAWGENLDGIEYARRFWPEDEIGEGQ--------FLAKF 293


>gi|297206034|ref|ZP_06923429.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii JV-V16]
 gi|297149160|gb|EFH29458.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii JV-V16]
          Length = 781

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 15/297 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           +P+ FK++ +     ++  +   A  +       +      +      +  P  G+    
Sbjct: 326 LPKEFKDKYQKLLA-KKADSFFTALEAEPKKAFRLNPLKADYQEVSYDLSKPVDGVADAY 384

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
             E       +  G  + QD SA  P +  G      VLDLCAAPGGK+      + +  
Sbjct: 385 YGEISGRDIEWVSGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNKG 444

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR N++R       +   D      K    FDA+LVDAPCS  G  
Sbjct: 445 LLVANEISTSRAKNLRENIERWGADNCLVTNEDTSHLAQKFPRFFDAILVDAPCSGEGMF 504

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ D +     + +++ +  Q+++L + +  +KPGG +++S C+   ++ EE+   ++ 
Sbjct: 505 RKNHDAVTYWSQEYVLECSNRQKEILNEAVKMLKPGGSLLYSTCTYAPEEDEEICAYLVN 564

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                +    ++ A          L   E   R  P+               F    
Sbjct: 565 ELGFKLVETKVSVASQGVPAWGENLDGIEYARRFWPEDEIGEGQ--------FLAKF 613


>gi|226507554|ref|NP_001151492.1| NOL1R [Zea mays]
 gi|195647210|gb|ACG43073.1| NOL1R [Zea mays]
          Length = 498

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 153/420 (36%), Gaps = 56/420 (13%)

Query: 44  RDQILVRAIVNVTLRFLPRIDAVLD--FVLISSLPRKKYSLQQLLRVSVAQILYLDVADY 101
           R++    A+V  TL++LP +  VL    +L S   +++  +     V+   IL+      
Sbjct: 77  RNKRATFALVCQTLKYLPILKEVLASSEILSSKWKKQEELVY----VTTYDILFG---QG 129

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161
             V  +VEQ    +++     L     R+  R   +LL   + +   P +    L     
Sbjct: 130 IAVSGSVEQLIMLQKDSLRTTLDKVCARKRVRCVEDLLSNKSAVKPKPRF----LRVNTL 185

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
           K    ++ +       +D                       + +      + + P   +G
Sbjct: 186 KVTTESVIEELNKMHMVD----------------KDEMVPDMLVLPPGTDLHNHPLVTDG 229

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278
             ++Q  ++ +            V+D CAAPG KT  L   +     + A +++K R + 
Sbjct: 230 KVFLQGRASCMVAVALCPKPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAKT 289

Query: 279 LRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL---WT 331
           L+  + R       I+  D      +        A+L+D  CS +G      D L    +
Sbjct: 290 LQHTVRRSGANNIRIVNGDFLEVDRNDPSYAEVHAILLDPSCSGSGISTERLDYLLPSHS 349

Query: 332 RDTDDIV-------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           RD+ D         K + FQ+K L   +SF      VV+S CS+ + ++E+V+  VL  +
Sbjct: 350 RDSQDDAGTSSRVMKLSAFQKKALSHALSFPSVE-RVVYSTCSIHQAENEDVINSVLPLA 408

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                 +      W    + +    E  +R  P           G++GFF     +   P
Sbjct: 409 TSLGFELATPFPQWHRRGLPVFQGSEHLLRTDP---------EDGLEGFFIALFVKKAGP 459


>gi|308802602|ref|XP_003078614.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri]
 gi|116057067|emb|CAL51494.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri]
          Length = 565

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 103/294 (35%), Gaps = 69/294 (23%)

Query: 211 SIVSLPGFAE-----GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK 265
           ++  L  F +     G    Q+  + IP           V+D+CAAPG KT+QL+    +
Sbjct: 23  AVRGLHAFLKTATETGALTRQELVSMIPPLFLDVEPGHLVMDMCAAPGSKTSQLLEMLHE 82

Query: 266 -----------VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLF 307
                      V A D S +R   L     R +  A  +    A  +         K  F
Sbjct: 83  ASGPSETPRGVVVANDASLQRANLLTHQCKRSNSPALIVTNHQAQLFPILHDAKGKKLRF 142

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D +L D PCS  GT+R+ PD+    +    V     Q ++    +  +  GG +V+S CS
Sbjct: 143 DRILADVPCSGDGTLRKSPDLWRKWNASSGVDLHTLQLEIATHALRLLDVGGRLVYSTCS 202

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA----------------------- 404
           L+  ++E VV  +L+ +   VELV ++ +  +    A                       
Sbjct: 203 LNPLENEAVVAALLKRAGGAVELVDVSKSLPELKRRAGMKLWKVGDVFGWHNSFEETGTK 262

Query: 405 ---------------MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                               E  +RI P +            GFF     +  +
Sbjct: 263 RQKTIAKTMFWEASYEQFPLERCVRIFPHL--------DDTGGFFITVFEKKGE 308


>gi|149578470|ref|XP_001521204.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein
           [Ornithorhynchus anatinus]
          Length = 837

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 100/285 (35%), Gaps = 71/285 (24%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 201 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 260

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL+     ++  DA                  +D +L D PCS  GT+
Sbjct: 261 NKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLHIDVNGRKEVLFYDRILCDVPCSGDGTM 320

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G+  +  GG +V+S CSL+  + E V+  +L 
Sbjct: 321 RKNIDVWKKWTTLNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 380

Query: 383 SSPIPVELVPLNSAY------------------------------------------WKS 400
            S   +EL  ++S                                             K 
Sbjct: 381 KSEGALELADVSSELPGLKWMPGVTQWKVMMKDGQWFADWKDVPQSRHTQIRPTMFPPKD 440

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA-LRRLIQP 444
            +   A+  E  +RI P              GFF    L++   P
Sbjct: 441 QEKLKAIHLERCLRILPHHQ--------NTGGFFVAVLLKKSSMP 477


>gi|30109258|gb|AAH51209.1| Nsun5 protein [Mus musculus]
          Length = 286

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 23/247 (9%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L        V+D CAAPG KT+ +     
Sbjct: 11  VFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLK 70

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCS 317
           +  K+ A D   +RL  +   + R  +   ++ E D     P          +L+D  CS
Sbjct: 71  NQGKIFAFDQDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCS 130

Query: 318 STGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373
            +G + R        T   + +   A FQ++ L   + F  ++    +V+S CSL ++++
Sbjct: 131 GSGMLSRQLEEHGEGTPSKERLQALAGFQQRALCHALRFPSLQ---RLVYSTCSLCQEEN 187

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E+VVQ+ L+ +     L P+    W    ++     E  +R +P+             GF
Sbjct: 188 EDVVQEALQHNSGTFRLAPVLPT-WPHRGLSTFPGSEHCLRASPETTL--------TGGF 238

Query: 434 FAVALRR 440
           F     R
Sbjct: 239 FIAVFER 245


>gi|323344524|ref|ZP_08084749.1| NOL1/NOP2/sun family protein [Prevotella oralis ATCC 33269]
 gi|323094651|gb|EFZ37227.1| NOL1/NOP2/sun family protein [Prevotella oralis ATCC 33269]
          Length = 475

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 117/303 (38%), Gaps = 11/303 (3%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P+ F+   E   G E    +        +  +              +          
Sbjct: 1   MKLPKEFEAYTEKLMGSELYAQLLQGLAEEPHAFVRTNPFKGASFAICGSKGTVEWYEHG 60

Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI- 260
               +       P    GV++VQ+ S+    Q+        +++LD+CAAPGGK+     
Sbjct: 61  HWFADRPNFTFDPLLHAGVYYVQEKSSMFLAQVLRQHITGPVTMLDMCAAPGGKSTLARV 120

Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
              +G+ +   +  K+R + L  N+ +  +    +      +Y     +FD +L D PCS
Sbjct: 121 VLPAGSLLVCNEPVKQRAQVLSENVQKCGIAEVIVTNNYPEEYRKAGLMFDVILCDVPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+  + +      ++ K +  QR+++      ++PGG++V+S C+ + +++EE V
Sbjct: 181 GEGMFRKDANAIKEWSIGNVDKCSRLQREIVRSAWECLRPGGLLVYSTCTFNAKENEENV 240

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           Q + +        V +   +     +        + R  P  +   D V    +G F   
Sbjct: 241 QWICKELKGEPVGVDICKEWNICGSLLSGFDAPVY-RFIPRYVGDKDCVQG--EGLFMAV 297

Query: 438 LRR 440
           LR+
Sbjct: 298 LRK 300


>gi|156379129|ref|XP_001631311.1| predicted protein [Nematostella vectensis]
 gi|156218349|gb|EDO39248.1| predicted protein [Nematostella vectensis]
          Length = 668

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 114/333 (34%), Gaps = 73/333 (21%)

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232
                  L    D   W   L+   +       K     +        G    Q+A + I
Sbjct: 72  QVDPPTSLPWYPDELAWKVNLSRKFIRKSPSIKKFHQFLVQETE---CGNISRQEAVSMI 128

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCN 282
           P  L        +LD CAAPG KT+Q+I               V A ++  +R   L   
Sbjct: 129 PPLLMDIKPGQKILDTCAAPGSKTSQIIEMLHGDKETGIAEGLVIANELQNKRCYMLIHQ 188

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAPCSSTGTIRRHPDVLWT 331
             RL   +  I   DA  Y    +           FD +L D PCS  GT+R++P +   
Sbjct: 189 SKRLRSPSCVITNHDASTYPTLHVKKENGDRTPLLFDRILCDVPCSGDGTMRKNPLIWNK 248

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                 V     Q ++L + +  ++ GG +V+S C++   ++E VV ++LR+S   +ELV
Sbjct: 249 WTPQLGVSLHRTQLRILARAMEMLEVGGRIVYSTCTMSPIENESVVAEMLRNSDGALELV 308

Query: 392 PLNSA-----------------------------------------YWKSIDMAMALSPE 410
            L++                                               + A A+  E
Sbjct: 309 DLSNELPNLKRSPGLHSWKLMMKDGSEVTGCDPGSPAFLGGFRPSMLPPPDNEAKAMHLE 368

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             IR+ P   +          GFF  AL +  Q
Sbjct: 369 CCIRVYPHQQD--------TGGFFIAALVKTKQ 393


>gi|330998285|ref|ZP_08322110.1| NOL1/NOP2/sun family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568674|gb|EGG50475.1| NOL1/NOP2/sun family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 503

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 106/275 (38%), Gaps = 11/275 (4%)

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234
             +  L      E        V   +G              P F  G ++VQ+A++    
Sbjct: 41  NPFKSLWAGLSTEYLNGGDGPVPWASGEGGYLSERPPFTFDPLFHAGAYYVQEAASMFLG 100

Query: 235 Q--LFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLY 289
           Q         +  LDLCAAPGGK+  +      G+ + A +  K R + L  NL +    
Sbjct: 101 QVLCRYVTRPVIALDLCAAPGGKSTHIRSCLPEGSLLVANEPVKARAQVLLENLTKWGHP 160

Query: 290 AEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
              +      D+      FD ++ D PCS  G  R+  D +     + +      QR++L
Sbjct: 161 DVVVTNSYPRDFARLPAFFDLLVTDVPCSGEGMFRKEEDAVTGWSMEAVRMCRDRQREIL 220

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
                 +KPGG++V+S C+L+  + EE V  +       +  + +   +    ++    S
Sbjct: 221 RDVWPSLKPGGLLVYSTCTLNALEDEENVAWIAEELGAEILPLDVEPGWGVVGNLLPLSS 280

Query: 409 PEGWI---RITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  +   R+ P  +       +  +GFF   LR+
Sbjct: 281 VKDTVKAERLFP--VAHFIPGFTRGEGFFLAVLRK 313


>gi|291279543|ref|YP_003496378.1| hypothetical protein DEFDS_1153 [Deferribacter desulfuricans SSM1]
 gi|290754245|dbj|BAI80622.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 375

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 20/233 (8%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267
           ++  +  F +G + +QD ++ +   L   +   ++LD+CA  GGK    A    +   + 
Sbjct: 158 NVRVMEKFKKGFFEIQDEASQLITFLLPIIPGNNILDICAGTGGKSLAIASHFYNSINIE 217

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           A D+ K RL+KL               ++          +DAVL+DAPCS  GT+RR  D
Sbjct: 218 AFDIDKNRLQKLAKR------SKIADAKIKIIKKPKTNFYDAVLIDAPCSGLGTLRRDVD 271

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +        + K    QR +  + +   K GG +++  CS  K+++E+ V+  L +    
Sbjct: 272 LNIRTTPRSLKKVLNLQRTIFNKAVESAKNGGYIIYVTCSFLKEENEKQVEYFLENHKN- 330

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      K I+++  L+   +     +   K     +GMD FF    ++
Sbjct: 331 ----------IKLINISNILTDNHFNTFIHNQFFKTSPKINGMDSFFGAVFQK 373


>gi|110638264|ref|YP_678473.1| tRNA and rRNA cytosine-C5-methylase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280945|gb|ABG59131.1| tRNA and rRNA cytosine-C5-methylase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 468

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 120/303 (39%), Gaps = 23/303 (7%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +P+ F  ++E   G +     S           +++     W   +    +P       
Sbjct: 5   QLPQAFITQMETLLGNDYTAFESALLRPS---RRSIRLHPHKWPQPMGLTQVPWYKNGYW 61

Query: 207 ELPES-IVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIV 261
              E+ +   P F  G ++VQ+AS+    Q           L+VLDLCAAPGGK+  +  
Sbjct: 62  LDEEATVTYDPLFHAGTYYVQEASSMFLAQLLEACIKDKEELTVLDLCAAPGGKSTLICD 121

Query: 262 ---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCS 317
                  + + +V K R+  L  NL +       +   D          FD ++VDAPCS
Sbjct: 122 VLDEKHLLISNEVIKTRVNILDENLLKWGYNNVIVTHNDPADFDRLGTFFDIIVVDAPCS 181

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P  +   DT  +      QR++L      +KPGGI+++S C+ +++++EE +
Sbjct: 182 GEGMFRKDPAAINEWDTAHVDLCCSRQRRILSDIWQVLKPGGIIIYSTCTFNRKENEENM 241

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           + +          + + +           +    + R  P  +           GFFA  
Sbjct: 242 RWMQEQYQAEGIELNIPAFEGVETGNENGI---HFYRFYPHKVTGE--------GFFASV 290

Query: 438 LRR 440
           +R+
Sbjct: 291 IRK 293


>gi|291402236|ref|XP_002717453.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Oryctolagus
           cuniculus]
          Length = 469

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 103/272 (37%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLSSYLYLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++EK++ N   L L +      D                     + FD 
Sbjct: 260 GEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMSQDTEGEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  T    ++      QRKL    +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLFTVAVQLLKPGGVLVYSTCTVT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   L + P  ++L P          +   LS E   ++     +        
Sbjct: 377 LAENEEQVAWALATFPC-LQLQPQEPLIGGEGMVGAGLSLEQLKQL--QRFDPSVVPLQD 433

Query: 430 MD---------------------GFFAVALRR 440
            D                     GFF     +
Sbjct: 434 TDIDSFKNARMEDMIWLANKDCIGFFIAKFVK 465


>gi|71414717|ref|XP_809451.1| methyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70873834|gb|EAN87600.1| methyltransferase, putative [Trypanosoma cruzi]
          Length = 831

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 144/424 (33%), Gaps = 58/424 (13%)

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQIL--------YLDVADYAVVDLAVEQAKRDKENRH 119
                S++ +   +    L  ++AQ++          +V     +D      K   + R 
Sbjct: 87  APRSQSTIEKIDVTE---LCFAIAQVIAPVNVHERRRNVGSTEPLDENAPLIKYYSKGRF 143

Query: 120 FA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
            +  +  N+   +V  ++            +     ER       E         +    
Sbjct: 144 ASLLECANTEDAQVEWQRFIACISSPLPMTLRVHRNERTLKRIADE-------FLLHDPM 196

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           +   V          +            +   E I      A      Q+A + +PV + 
Sbjct: 197 LREVVHSVSPLLPPSIGLYGCSHAVYHTEPRVEYICRT-LHAASAVSFQEAVSVLPVMVA 255

Query: 238 GTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTA--------LDVSK-RRLEKLRCNLD 284
               + +VLD+CAAPG KT      ++  G    +         +  + +  + L   L 
Sbjct: 256 DIHPHHAVLDMCAAPGSKTLHVLDEMLQYGWSTYSVSQGVFFVNEKDRIKATQILPARLK 315

Query: 285 RLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R H         DA  +              +K FD ++ D PCS  GT+R+ P    + 
Sbjct: 316 RFHAPNVICTRCDASQWPRLFYSFERGSSLAEKRFDRIICDVPCSGDGTVRKEPASASSW 375

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
               +      Q+ LL +G+  +K GGI+V+S CS++ ++ EEVV   L      VEL+ 
Sbjct: 376 SPGYVKSLVPTQKALLRRGLDLLKEGGILVYSTCSMNPKEDEEVVCAGLELFGDTVELLD 435

Query: 393 LNSAYWKSIDMAMALS-------PEGWIRITPDMLE-----KIDGVSSGMDGFFAVALRR 440
           +N+   +   +  ++         +  I   P   +     ++        GFF  A R+
Sbjct: 436 VNAILREKGALLHSVGGILSPNVDQLQIATLPLTFDGRKVLRVLPHRDDTGGFFVAAFRK 495

Query: 441 LIQP 444
              P
Sbjct: 496 RSLP 499


>gi|261403075|ref|YP_003247299.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus vulcanius
           M7]
 gi|261370068|gb|ACX72817.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus vulcanius
           M7]
          Length = 265

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 25/265 (9%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           +       +           +K+ P SI S P +  G +  Q  S+ IP  +     +  
Sbjct: 18  NRLERKGIVLKETFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPKEDDF 77

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD+C+APGGKT     ++ +   + A+++SK R + L+ N++R+ +    II  D   Y
Sbjct: 78  VLDMCSAPGGKTTHLAQIMNNNGCIVAVEISKTRTKALKSNINRMGVLNTIIINKDMRKY 137

Query: 302 CPKK-----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
             +       FD +L+DAPC+      +H +V      +DI   +  Q++LL   +  +K
Sbjct: 138 KEELLKKKIQFDKILLDAPCTGNEIKDKHRNV----SKEDIKYCSLRQKELLNIALDLLK 193

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V+S CS++ +++EEV++ +L ++   +ELV L    +  I++      +G +R+ 
Sbjct: 194 KGGELVYSTCSIEVEENEEVIRHIL-NNRNDIELVYLTPDKFLGINIKKGYL-DGTLRVF 251

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P               FF   LR++
Sbjct: 252 PPNEP-----------FFIAKLRKI 265


>gi|31753229|gb|AAH53751.1| NOL1/NOP2/Sun domain family member 6 [Mus musculus]
          Length = 476

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 106/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E I   P F        ++Q+  +++   +        +L++CAAPGGKT      +   
Sbjct: 200 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILEMCAAPGGKTTHTAALMQDK 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++ KL+ N   L L++      DA                    + FD 
Sbjct: 260 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +++DAPCS  G   + P++  T    ++      QRKLL   +  +KPGG++V+S C++ 
Sbjct: 320 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P          +   L+ E   ++     +        
Sbjct: 377 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 433

Query: 430 MD---------------------GFFAVALRR 440
           MD                     GFF     +
Sbjct: 434 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 465


>gi|260591056|ref|ZP_05856514.1| NOL1/NOP2/sun family protein [Prevotella veroralis F0319]
 gi|260536921|gb|EEX19538.1| NOL1/NOP2/sun family protein [Prevotella veroralis F0319]
          Length = 468

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 122/316 (38%), Gaps = 15/316 (4%)

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
             ++ ++     +P  F +     +G+E           P    +       +   ++N 
Sbjct: 21  CPIIYKVENAPTLPPAFVDYTRKLFGEELFDVFLKGLTEPAPTSIRKNSYKLSATEEVNP 80

Query: 196 VML-----PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDL 248
            +                  +    P    GV++VQ+AS+     +      + +  LDL
Sbjct: 81  NLHPEPIPWCKEGFWLAERPNFTFDPMLHTGVYYVQEASSMFLSHVLRHYVKHPVMALDL 140

Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-K 304
           CAAPGGKT         G+ + + +   +R + L  N+ +       +      +Y   K
Sbjct: 141 CAAPGGKTTCARSSLPQGSFLFSNEPIPKRAQILAENVQKYGHSDVIVTNNYPREYQKTK 200

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
             FD ++ D PCS  G  R+ P  +    T ++      QR ++      +KPGG++++S
Sbjct: 201 LTFDVIIADVPCSGEGMFRKDPQAIAEWSTTNVENCWKLQRSIISDIWDNLKPGGLLIYS 260

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            C+ +  + EE V  +L       EL+P+ +    +I  ++  +P       P  + +  
Sbjct: 261 TCTFNAHEDEENVAWILDEY--NAELLPVPTEEAWNITSSLIGNPSKTASNFP--VYRFI 316

Query: 425 GVSSGMDGFFAVALRR 440
              +  +G F   +R+
Sbjct: 317 PGKTRGEGLFMAVIRK 332


>gi|229824807|ref|ZP_04450876.1| hypothetical protein GCWU000182_00156 [Abiotrophia defectiva ATCC
           49176]
 gi|229790810|gb|EEP26924.1| hypothetical protein GCWU000182_00156 [Abiotrophia defectiva ATCC
           49176]
          Length = 468

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 20/266 (7%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           K   +     G        +    P +  G++++Q+ SA  P  +        VLDLCAA
Sbjct: 54  KTENIPWIDNGYYFDGSVFAATRHPYYYAGLYYIQEPSAQTPANILRVDPGDRVLDLCAA 113

Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
           PGGK+ +    +     + + D+S  R + L  NL    +    I      +        
Sbjct: 114 PGGKSTELAAKLNGKGVLVSNDISATRAKALLKNLGVFGIKNALITSETPKNLSDVFKGY 173

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           F+ +LVDAPCS  G  R+ P ++   +          Q+ +L   ++ +   G +++S C
Sbjct: 174 FNKILVDAPCSGEGMFRKEPAIIKNWEQYGTGYYNDLQKDILPNAVNMLSDDGYLLYSTC 233

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLE 421
           +    ++E  +  +L   P    +   +S           +  +     G +R+ P  +E
Sbjct: 234 TFSPDENEGTINYILTMFPELEVIPVNDSYEGFDSGHPEWIGSDKEEIRGAVRLWPHKME 293

Query: 422 KIDGVSSGMDGFFAVAL--RRLIQPK 445
                     G F   L  ++   PK
Sbjct: 294 GE--------GHFLCLLHKKKTDYPK 311


>gi|330685494|gb|EGG97147.1| NusB family protein [Staphylococcus epidermidis VCU121]
          Length = 228

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 17/224 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M + +  R ++   +  ++ +       ++          L   D+ L   +V  T++  
Sbjct: 1   MTNSI--RGLAFETIQAILDEGAYSNLEINEVLSTYEISDL---DKGLFTELVYGTVKRK 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             +D  L   L + +      +++LL +S+ Q +YLD V D+A+++ AVE AK +    +
Sbjct: 56  YTLDFYLKPFLKTKIKG---WVRELLWMSIYQYVYLDKVPDHAIINEAVEIAKEE-GGYY 111

Query: 120 FAKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
              +VN ILR +        ++  +  +RIA    +P+W  +     YG E+  AI+ + 
Sbjct: 112 TGNVVNGILRNIMRSELPDVQDIQDDKKRIAIQYSLPKWLVDHWVTHYGLEQTEAIAQSF 171

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
           + P+   +       +    ++A+      +       S+   P
Sbjct: 172 LEPVATTVRANITRGSIDDIISALEKKVILLIEMMFYHSVSIFP 215


>gi|301057241|ref|ZP_07198370.1| NOL1/NOP2/sun family protein [delta proteobacterium NaphS2]
 gi|300448692|gb|EFK12328.1| NOL1/NOP2/sun family protein [delta proteobacterium NaphS2]
          Length = 300

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 108/283 (38%), Gaps = 7/283 (2%)

Query: 159 FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF 218
               E+   +       L     V   +     +L  V+     + + +      +L  +
Sbjct: 19  QESLEKPFPVHLRMNRLLAAPSKVVSRLRERGIRLTQVLKAYDTLFVAQNLPYPGNLLEY 78

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275
             G +  Q  ++++         +  VLD+CAAPGGK+A L   + +   +   D+   R
Sbjct: 79  FLGYFHPQAMTSALAALAMRPRKHALVLDMCAAPGGKSAHLADLVENTGFMVCNDLFSNR 138

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
              L   L RL +    +    A ++  +  FD +L D PCS  G  R      + R+  
Sbjct: 139 HVPLGHTLSRLGVQNAVVTGYQAQEFPLRHPFDYILADVPCSCEGKFRITSKKTFYREDK 198

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
              K    Q+K+LL+G   +K  G ++++ C+ +  ++E V+  +L       EL+P++ 
Sbjct: 199 GKTKLPDTQKKILLRGFDLLKADGEMLYATCTYNPAENEAVINSLLNHR--DAELLPIDL 256

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                  +          R+      +     +   GFF   +
Sbjct: 257 KVAFEPGLTEWNHETYDKRL--ARTARFYPHQTDSVGFFMARI 297


>gi|296110425|ref|YP_003620806.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
 gi|295831956|gb|ADG39837.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
          Length = 471

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 111/316 (35%), Gaps = 33/316 (10%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
            +PE F  +  N    E       +   P+     +    +  +             +  
Sbjct: 3   NLPEDFINK-YNRLLGEEADNFFKSFSKPVQKAYRINPLKDNTSVLDVPDQGQVPYGQWG 61

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263
              +          GV + Q+ SA    ++        VLDL AAPGGKT      +   
Sbjct: 62  HFGQVSGHTVAHVTGVVYSQEPSAQFVGEVVHPQPGERVLDLSAAPGGKTTHLASFMQQK 121

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321
             + + ++   R + L  N++R  +    +      +   K    FD +L+DAPCS  G 
Sbjct: 122 GLLWSNEIFMNRAKVLSENVERFGIQNTIVTSHTPAELSAKLPQYFDKILLDAPCSGEGM 181

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R++   +     D   + A  QR +L + +  ++PGG +++S C+   ++ E+++  + 
Sbjct: 182 FRKNETAIQQWHKDFPQELADLQRSILHEAVKMLRPGGQIIYSTCTFAPEEDEQMIAWLT 241

Query: 382 RSSPI---PVELVPLNS------AYWKSIDMAMALSPE----------GWIRITPDMLEK 422
            + P         P ++        W        L+ E             R+ P +L  
Sbjct: 242 SAYPTLTLNTIEKPAHAHLSDGRPEWADKQYTDGLTTESLTKDSTDLKKTARLWPHLL-- 299

Query: 423 IDGVSSGMDGFFAVAL 438
                   +G F   L
Sbjct: 300 ------NGEGHFVAKL 309


>gi|158255724|dbj|BAF83833.1| unnamed protein product [Homo sapiens]
          Length = 767

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 100/284 (35%), Gaps = 61/284 (21%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q+A + IP  L     +  +LD+CAAPG KT            +      V A DV 
Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322
            +R   L     RL      ++  DA                  +D +L D PCS  GT+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ DV     T + ++    Q ++  +G   +  GG +V+S CSL+    E V+  +L 
Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIGDEAVIASLLE 337

Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421
            S   +EL  +++          I     ++ +G               +I P M     
Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397

Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445
                        +I        GFF   L +         QPK
Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441


>gi|315638455|ref|ZP_07893632.1| NOL1/NOP2/sun family protein [Campylobacter upsaliensis JV21]
 gi|315481446|gb|EFU72073.1| NOL1/NOP2/sun family protein [Campylobacter upsaliensis JV21]
          Length = 288

 Score =  116 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 123/298 (41%), Gaps = 24/298 (8%)

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKF------DIETWAHKLNAVMLPTGGIRLKEL 208
           +L   Y +  +  + ++  S   + + + F       I  +   L    L +     K  
Sbjct: 4   KLAQIYTQNELEILKESFKSAKNVCVFLNFLKTNEIMINEFFKDLEFQKLNSFCYLFKAQ 63

Query: 209 PESI-VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264
             SI   +  F EG +++Q+ S+ +  +      N S+LD+CAAPGGK+      + + A
Sbjct: 64  DRSILSKMKAFNEGHFYIQNYSSYLCAKNLSVKPNESILDMCAAPGGKSINLANFMQNKA 123

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
            +  ++ +K R   L+ NL    + A   + +           FD +L+DAPCS+   I 
Sbjct: 124 YLACVEANKERFFTLQKNLKNYGVNAKIFLKDAKNIGRLCPLKFDKILLDAPCSTLAKIG 183

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
                   +   +I   A  Q+KLL   +  +K GG +V+S C+  ++++EEV++  LRS
Sbjct: 184 FENV----KSPKEIKALALLQKKLLHSALKALKHGGELVYSTCTFLREENEEVLENALRS 239

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L             +     E   RI P             DGFF   +R++
Sbjct: 240 EFELEFLELDLEGVIAKEAKSEFKELEKARRIMPC---------ENYDGFFIAKMRKI 288


>gi|322818072|gb|EFZ25590.1| methyltransferase, putative [Trypanosoma cruzi]
          Length = 824

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 134/387 (34%), Gaps = 47/387 (12%)

Query: 97  DVADYAVVDLAVEQAKRDKENRHFA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
           +V     +D      K   + R  +  +  N+   +V  ++            +     E
Sbjct: 121 NVGSTEPLDENAPLLKYYSKGRFASLLECANTEDAQVEWQRFIACISSPLPMTLRVHRNE 180

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214
           R       E +L     C     +   +   I  +                +   E I  
Sbjct: 181 RALKHIADEFLLHDPMLCEVVHSVSPLLPPSIGLY-------GCSHAVYHTEPRVEYICR 233

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------- 265
               A      Q+A + +PV +     + +VLD+CAAPG KT  ++    +         
Sbjct: 234 T-LHAASAVSFQEAVSVLPVMVADIHPHHAVLDMCAAPGSKTLHVLDEMLQYGWSTSSVS 292

Query: 266 ---VTALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDA 309
                  +  + +  + L   L R H         DA  +              +K FD 
Sbjct: 293 QGVFFVNEKDRIKATQILPARLKRFHAPNVICTRCDASQWPRLFYSFERGSSFAEKRFDR 352

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           ++ D PCS  GT+R+ P    +     +      Q+ LL +G+  +K GGI+V+S CS++
Sbjct: 353 IICDVPCSGDGTVRKEPASASSWSPGYVKSLVPTQKALLRRGLDLLKEGGILVYSTCSMN 412

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS-------PEGWIRITPDMLE- 421
            ++ EEVV   L      VEL+ +N+   +   +  ++         +  I   P   + 
Sbjct: 413 PKEDEEVVCAGLELFGDTVELLDVNAILREKGALLHSVGGILSPSVDQLQIATLPLTFDG 472

Query: 422 ----KIDGVSSGMDGFFAVALRRLIQP 444
               ++        GFF  A R+   P
Sbjct: 473 RKVLRVLPHRDDTGGFFVAAFRKRSLP 499


>gi|145345894|ref|XP_001417434.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577661|gb|ABO95727.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 655

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 125/396 (31%), Gaps = 66/396 (16%)

Query: 106 LAVEQAKRDKENRHFAK--LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
                A    E  + A+    ++   R   E       +           E +      +
Sbjct: 13  EPPALANERFEAYYAAQGVCEDAGDFRAMMEAFRRPLPLTFRLNASTALVEAVRRKLEGD 72

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
            + A+           +    D  +W   ++             L            G  
Sbjct: 73  VLPALKREASMKPPKCVAWYPDRLSWQIDISQSASLKQSESRGVLGLHAFLKSAGETGAL 132

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK-----------VTALDVS 272
             Q+  + IP           V+D+CAAPG KT+QL+                V A D S
Sbjct: 133 TRQELVSMIPPLFLEVKPKHRVIDMCAAPGSKTSQLLEMLHGATNAGETPRGVVVANDAS 192

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRH 325
            +R   L     R +  A  +    A  +         K  FD +L D PCS  GT+R+ 
Sbjct: 193 LQRANLLTHQCKRSNSPALVVTNHQAQLFPILHDAKGKKIRFDRILADVPCSGDGTLRKS 252

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           PD+    +    V     Q ++    +  ++ GG +V+S CSL+  ++E VV  +L+ + 
Sbjct: 253 PDLWKKWNASSGVDLHTLQLEIATHALRLLEVGGRLVYSTCSLNPLENESVVAALLKRAK 312

Query: 386 IPVELVPLNSAYWKSIDMA--------------------------------------MAL 407
             VELV ++ +  +                                            A+
Sbjct: 313 GSVELVDVSKSLPELKRRPGMKRWKVGDIYGWHDSFEETGKKRMKTVAKTMFWNREYDAM 372

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             E  +R+ P +            GFF  AL++  +
Sbjct: 373 PLERCVRVFPHL--------DDTGGFFITALKKTAE 400


>gi|309804792|ref|ZP_07698856.1| ribosomal RNA small subunit methyltransferase B family protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|309806295|ref|ZP_07700308.1| ribosomal RNA small subunit methyltransferase B family protein
           [Lactobacillus iners LactinV 03V1-b]
 gi|309807767|ref|ZP_07701701.1| ribosomal RNA small subunit methyltransferase B family protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809953|ref|ZP_07703801.1| ribosomal RNA small subunit methyltransferase B family protein
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308165902|gb|EFO68121.1| ribosomal RNA small subunit methyltransferase B family protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308167279|gb|EFO69445.1| ribosomal RNA small subunit methyltransferase B family protein
           [Lactobacillus iners LactinV 03V1-b]
 gi|308169027|gb|EFO71111.1| ribosomal RNA small subunit methyltransferase B family protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169741|gb|EFO71786.1| ribosomal RNA small subunit methyltransferase B family protein
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 135

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 18/140 (12%)

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           Y   + FD +LVDAPCS  G IRR P+V + +  +D+   +  Q  +L      +   G 
Sbjct: 12  YFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGE 71

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C++  +++E+VV++ L + P    L P              LS    I+I PD  
Sbjct: 72  LVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN---------LSKCKMIKIFPDDY 121

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                     DGFF     +
Sbjct: 122 --------NSDGFFIAKFVK 133


>gi|323303251|gb|EGA57049.1| Nop2p [Saccharomyces cerevisiae FostersB]
          Length = 509

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 112/277 (40%), Gaps = 19/277 (6%)

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
           +  R        LL+ I        +  E+L N +     +   +A      I +     
Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278

Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234
                  A  L    +    I                I + P +  G + +Q AS+ +PV
Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338

Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                  N  +LD+ AAPGGKT     ++ +   V A D +K R + L  N+ RL     
Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398

Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +   DA ++      FD +L+DAPCS TG I +   V  +R   D ++    Q++LLL 
Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458

Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
            I  V    K GG++V+S CS+  ++ E V+   L  
Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALXK 495


>gi|71030254|ref|XP_764769.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351725|gb|EAN32486.1| sun-family protein, putative [Theileria parva]
          Length = 447

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 109/326 (33%), Gaps = 42/326 (12%)

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
           +  R                  PE     +E+ YG E+ + I +         L V    
Sbjct: 83  LSDRWRLMSNNKNLAPHIRCSFPEELFSLIEDEYGPEKAVRICNILNEEPVTFLRVNTLK 142

Query: 185 -DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLF 237
              +     L    +P            +         P +  G+  +QD S+ I  Q  
Sbjct: 143 ISRDKAYKFLLHKGVPVEKCVFSNSGLFVQDKRKLLECPEYKSGIVEIQDESSQIIGQNI 202

Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD C   GGK       + +  ++   DV+   L+K +  + +  +    I+
Sbjct: 203 NCAEGDHVLDFCCGSGGKSLVFGPKLGNRGRIYLHDVNNNLLQKAKKRMHKAGIRNYYIL 262

Query: 295 EMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
           + +           D V+VD PCS  G  R +PD  WT + +++      QR ++ + + 
Sbjct: 263 DRNLEKMNKFYGKMDYVIVDVPCSGIGACRTNPDRKWTFNRENLNGLVMNQRMIVEESLP 322

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           F+K  G +V+  CS+ K +++  V    +                               
Sbjct: 323 FLKNNGKLVYITCSIFKAENQSQVDFFSKKYN---------------------------- 354

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALR 439
            + P+        S GM+G++   L 
Sbjct: 355 -LHPEEQILQLPESRGMNGYYMATLV 379


>gi|58266410|ref|XP_570361.1| tRNA (cytosine-5-)-methyltransferase [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57226594|gb|AAW43054.1| tRNA (cytosine-5-)-methyltransferase, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 764

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 94/312 (30%), Gaps = 75/312 (24%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            ++      +     F                  Q+A + IP        +   LD+CAA
Sbjct: 120 WQVNAPKRVVRKTEPFKNFQRFLVGETEVGNLSRQEAVSMIPPLFLDVQPHHHCLDMCAA 179

Query: 252 PGGKTA--------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC- 302
           PG KTA            S   + A D   +R   L     R+      +   DA  +  
Sbjct: 180 PGSKTAQIIEALNPHHTTSTGLLIANDSDYKRTHMLVHQTGRMPSKGLMVTNFDASMFPA 239

Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                     FD +L D PCS  GT+R++ ++       D       Q ++L + ++ +K
Sbjct: 240 IKLEEGKNLQFDRILADVPCSGDGTLRKNMEIWAKWGVADGNSLHSLQLRILERAMNMLK 299

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM--------ALS 408
           PGG +V+S CSL+  + E V+   L        LV ++S   +                 
Sbjct: 300 PGGRLVYSTCSLNPSEDESVIAAALLKH-TQFSLVDVSSDLPELKRRPGMDKWKVATQEG 358

Query: 409 PEGWIR-------------------------ITPD---------------MLEKIDGVSS 428
            +G I                            P                   ++     
Sbjct: 359 KDGEIHWYETFDEYRKAVDEGKEKEKGEKGKGLPSSLWAPENVESLNLNRCSMRLLPHDQ 418

Query: 429 GMDGFFAVALRR 440
              GFF   L R
Sbjct: 419 DTGGFFVAVLER 430


>gi|313157070|gb|EFR56500.1| putative ribosomal RNA small subunit methyltransferase F [Alistipes
           sp. HGB5]
          Length = 480

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 14/259 (5%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSV 245
                 +  +   G                F  G ++VQ+A++           +    +
Sbjct: 69  AVLADADGRVPWCGDGYYLAARPQFTFDSDFHAGAYYVQEAASQFVGHLLQGVEVAGRRI 128

Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDY 301
           LDLCAAPGGKT      +     V A ++ +RR + L  N+ +       +         
Sbjct: 129 LDLCAAPGGKTTLYASLVGPDGLVVANEIDRRRAQVLADNVRKWGTGNVAVTTCEARQLG 188

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             +  FD V VDAPCS  G  R+  D        ++   A  Q +LL +    +KPGG++
Sbjct: 189 GFEAWFDVVAVDAPCSGEGMFRKDRDARGEWSEGNVKLCAARQDELLREAWRALKPGGVL 248

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           ++S C+ ++ + E V++++L  +          +       +   +      R  P    
Sbjct: 249 IYSTCTFNRDEDEGVLERMLGWAEDEAAQAGEVAVDASWGIVCGRVGAFRTFRFYPHRAR 308

Query: 422 KIDGVSSGMDGFFAVALRR 440
                     GFFA  +R+
Sbjct: 309 GE--------GFFAAVVRK 319


>gi|317420025|emb|CBN82061.1| methyltransferase NSUN6 [Dicentrarchus labrax]
          Length = 467

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 34/260 (13%)

Query: 210 ESIVSLPGFA---EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F      + ++Q+  + +   + G      +LD+CAAPGGKT+ +   +   
Sbjct: 212 EPLYQSPSFDGVLPSLAFLQNLPSVVVGHVLGPRPGERILDMCAAPGGKTSHIAALMGDQ 271

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD------------YCPKKLFDAVL 311
            +V ALD  + +++++R N   LHL +      ++                P + FD VL
Sbjct: 272 GEVVALDRIRNKIDRIRENAQMLHLRSITAYCFNSTQAVSSDPAHTEGPPFPPESFDRVL 331

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           +DAPCS  G   + P++  T    +I      QRKL    +  +K GG++V+S C++   
Sbjct: 332 LDAPCSGLG---QRPNMGTTWGLKEICSYQPLQRKLFHAAVRLLKKGGVLVYSTCTVTLA 388

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM- 430
           ++EE V   L + P  + L P          +   LSPE  +R+      ++    +G  
Sbjct: 389 ENEEQVAWALETFPC-LTLQPQEPHIGAEGMLGAGLSPEQ-LRLLQRFSPELSWEQTGTT 446

Query: 431 ------D----GFFAVALRR 440
                 D    GFF     +
Sbjct: 447 ALSRRADSDTIGFFIAKFLK 466


>gi|149194741|ref|ZP_01871836.1| NOL1/NOP2/sun family protein [Caminibacter mediatlanticus TB-2]
 gi|149135164|gb|EDM23645.1| NOL1/NOP2/sun family protein [Caminibacter mediatlanticus TB-2]
          Length = 298

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%)

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA 268
            + I     + +   ++Q+ S+ I            VLDL AAPGGK+        KV+A
Sbjct: 67  RKKITKSNTYTQNKIYIQNLSSIISALNLNVKEEDWVLDLAAAPGGKSLIFSEVAKKVSA 126

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
           ++  K+R  +++ N              D         ++FD V +DAPCSS   I    
Sbjct: 127 VEPDKKRFFRMKRNFKEHGAKNIQTYNKDGRFVYKATGEMFDKVFLDAPCSSEAHIDGEV 186

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
                 +   + + +  Q++L++     +K GG ++++ C+   +++EE +  +L+  P 
Sbjct: 187 T---WWNLKRVKRFSKLQKELIISAFECLKSGGEMIYATCTFSPEENEETLDFLLKKYPN 243

Query: 387 P------VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  + +  +     K  D       +  IRI PD             GFF   +++
Sbjct: 244 AKIQEINLPIKNIQEGITKWDDKEYNKEVKKAIRILPDGAFS---------GFFFAKIKK 294

Query: 441 LIQ 443
            ++
Sbjct: 295 EVK 297


>gi|224092121|ref|XP_002309481.1| predicted protein [Populus trichocarpa]
 gi|222855457|gb|EEE93004.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 88/467 (18%), Positives = 164/467 (35%), Gaps = 72/467 (15%)

Query: 2   KSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53
           K  +N        AR  ++ +L  V++       +  +    S     S R++    A+V
Sbjct: 11  KPRLNNAERSAYFARREAAKVLHTVLQGDAKRQAVASI---KSLVYSPSIRNKKATFALV 67

Query: 54  NVTLRFLPRIDAV--LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
             TL+ L  I  V  +  +L S   R++  +  +       +L+         D     A
Sbjct: 68  CQTLKHLRIIKDVLEIANILNSKWKRQEELIYII----AYDVLFGKGISLVGGDAEKFLA 123

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            R                             A  S + +    +          L     
Sbjct: 124 CRK---------------------------DAMQSALAKLVVRKKAKNIDDFIALYQPPD 156

Query: 172 CISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWWV 225
              P Y+ +  +K D+++  H+L           +           + +      G  +V
Sbjct: 157 ITKPCYVRVNTLKLDVDSALHELGKQFKVQKDDMIPHLLVLPPHTDLHNHSLVLNGSIFV 216

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q  ++S+   +        VLD C+APG KT  L   +    K+ A +++K R ++L   
Sbjct: 217 QGKASSMVAAVLDPKPGWEVLDACSAPGNKTVHLAALMKGKGKIIACELNKDRAKRLEDT 276

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDA---VLVDAPCSSTGTIRRHPDVLWTRDTDDI-- 337
           +        +++  D  +  PK  F     +L+D  CS +GT  +  D L    T D+  
Sbjct: 277 IRLSGAANIEVLHGDFLNIDPKGPFSKVSAILLDPSCSGSGTAAQRLDHLLPSRTTDVVD 336

Query: 338 ----VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
                K A FQ+K L   +SF      +V+S CS+++ ++E+VV  +L  +      +  
Sbjct: 337 TERLNKLAAFQKKALAHALSFTAVK-RIVYSTCSINQIENEDVVNSILPLATSNGFQLAT 395

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               W+   + +    E  +R  P   ++         GFF     +
Sbjct: 396 PFPQWQRRGLPVFEGSEHLLRTDPVEDKE---------GFFIALFVK 433


>gi|124027597|ref|YP_001012917.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
           butylicus DSM 5456]
 gi|123978291|gb|ABM80572.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
           butylicus DSM 5456]
          Length = 405

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 145/411 (35%), Gaps = 47/411 (11%)

Query: 45  DQILVRAI--VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV----SVAQI--LYL 96
           D  L+R +  V         + A L  +L             +LR      + ++    L
Sbjct: 27  DAGLLRELRRVYG-----GALSAALQAILEPPARYYVRV--NVLRADPGTVLDEMRAQGL 79

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156
           +V     +  A+    R             + +R +   +      A            L
Sbjct: 80  EVYADEELPEALWLPVRGPVEPRDTGCRLVVDKRAAESIMLGANVYAPG-------VVAL 132

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
           +             +       +  +  D      +     L    +R +    S+    
Sbjct: 133 DEACANPGAEVTVVSENGVPVANAVLAEDYRRAMEE--GRGLVAVNVRPRYRVPSLRDTV 190

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSK 273
            +  GV + Q   +    ++        ++D+CAAPGGKT+ +       A++ A+D S 
Sbjct: 191 WWRRGVIYEQSLPSMYASRILDPEPGAVIVDMCAAPGGKTSHIYELVRGEARIIAVDHSA 250

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           R+ E++R  L RL     ++I  D+          + D VL+D PC+S G I +   +  
Sbjct: 251 RKTERMRMELGRLGHTRIEVIRADSRYLDRILGSGVADYVLLDPPCTSLGVIPK---IYD 307

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            +   D+  +A +QR+ L      +KPGG++V+S C++   ++EE  Q  +         
Sbjct: 308 RKTLRDVANTAEYQRQFLRAAAKLLKPGGVLVYSTCTMTLMENEENTQYAIEK------- 360

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + LN    +    +  L+   + +       +         G++   LR+ 
Sbjct: 361 LGLNPEEPQYHRFSRGLNQAWYAQ-------RSHPHVHRTTGYYIARLRKK 404


>gi|315653560|ref|ZP_07906480.1| NOL1/NOP2/sun family protein [Lactobacillus iners ATCC 55195]
 gi|315488922|gb|EFU78564.1| NOL1/NOP2/sun family protein [Lactobacillus iners ATCC 55195]
          Length = 469

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQESPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 MMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIQ----KTARFWIQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|67481353|ref|XP_656026.1| tRNA (cytosine-5-)-methyltransferase [Entamoeba histolytica
           HM-1:IMSS]
 gi|56473198|gb|EAL50640.1| tRNA (cytosine-5-)-methyltransferase, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 605

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 93/259 (35%), Gaps = 46/259 (17%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
              Q+  + +P  L       SVLD+CAAPG KT+QL+        V A DV K+R   L
Sbjct: 117 ISRQEVVSMLPAILLDVHEGSSVLDICAAPGSKTSQLVEMVGPTGCVVANDVDKQRSYLL 176

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
                RL      I    A +       FD +L D PC+  GTIR++ D        +  
Sbjct: 177 THQTKRLSAPHIVITNYRAQELSFNGFQFDRMLCDVPCTGDGTIRKNVDARTKWHVMNAY 236

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--- 395
                Q  ++   +  VK GG  V+S CSL+  + E VV ++LR+    +EL+       
Sbjct: 237 TLHREQLDIMKHVLCHVKVGGKFVYSTCSLNPIEDEAVVAELLRTFGDSIELIDARPLLP 296

Query: 396 -------------------------------AYWKSIDMAMALSPEGWIRITPDMLEKID 424
                                          A+    + A     E  +RI P       
Sbjct: 297 TLKFSEGVSEWKVFDKHFTVMKDKNDNIPITAFPPKPEEAAKFHLEYTLRILPH------ 350

Query: 425 GVSSGMDGFFAVALRRLIQ 443
                  GFF     +  +
Sbjct: 351 --QQNTGGFFTAVFIKKGE 367


>gi|288927631|ref|ZP_06421478.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330465|gb|EFC69049.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 486

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL----NAVMLPTG 201
            ++P+ F        G E    +  A      + L +               +  +  T 
Sbjct: 20  MVLPQEFTAYTRALMGNELYGKLLVALEQEPPVSLRLNPFKTKNGEVEVCNADESVAWTD 79

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--LSVLDLCAAPGGKTAQL 259
                    +    P F  G ++VQ+AS+     +   L +  +++LDLCAAPGGK+  L
Sbjct: 80  YGYYLSGRPNFTFDPLFHAGAYYVQEASSMFVAWIVKQLIHSPITMLDLCAAPGGKSTAL 139

Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAP 315
                 G+ +   +   +R   L  N+ +       +     A        FDA+L D P
Sbjct: 140 RSVLPQGSLLFCNEPITQRASILAENVQKFGHPDMVVSSNFAADYRKSGLQFDAILADVP 199

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+    +      ++ +    QR+++      +KPGG++++S C+ + +++E 
Sbjct: 200 CSGEGMFRKDAGAIAEWSETNVERCWRLQREIIADIWPCLKPGGLLIYSTCTFNDKENER 259

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            V+ + +      +L P+ SA+  +  +   +      R  P + +          G F 
Sbjct: 260 NVEWIAQEFDADFDLPPIPSAWNITGSIGSDIPAC---RFIPGISKGE--------GLFL 308

Query: 436 VALRR 440
             LR+
Sbjct: 309 CVLRK 313


>gi|195564994|ref|XP_002106092.1| EG:EG0007.9 [Drosophila simulans]
 gi|194203463|gb|EDX17039.1| EG:EG0007.9 [Drosophila simulans]
          Length = 747

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + IP  +        VLD+CAAPG KTAQ             +    V A DV
Sbjct: 158 ISRQEAVSMIPPIVLDVQPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320
              R   L     RL+     +   D+  +                FD +L D PCS  G
Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSAFPNLLTTKPDGSKAILKFDKILCDVPCSGDG 277

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T+R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++
Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337

Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398
           ++ +   +ELV                                               + 
Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFP 397

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              D    +  E  +R+ P + +          GFF   L +  Q
Sbjct: 398 LPADEMAKIGLEKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434


>gi|114563407|ref|YP_750920.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella
           frigidimarina NCIMB 400]
 gi|122299557|sp|Q081I3|RSMF_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|114334700|gb|ABI72082.1| putative RNA methylase, NOL1/NOP2/sun family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 484

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 123/273 (45%), Gaps = 26/273 (9%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLS 244
           +   +L+ V     G  ++   +  + +     +G++++Q+AS+ +P             
Sbjct: 55  SAGWQLSPVPWCADGFWIEGKDDIQLGNAIEHIQGLFYIQEASSMLPPTALFSNDNTAEI 114

Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD+ +APG K  Q+   + +   + A + S  R++ L  N+ R+      +   D   Y
Sbjct: 115 VLDVASAPGSKATQIAALMNNSGLLVANEYSASRVKVLHANVLRMGASHTALTHFDGRVY 174

Query: 302 CPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                + FDA+L+DAPC   GT+R+ P  L   D DD+      Q+ L+      +KPGG
Sbjct: 175 GEYLYESFDAILLDAPCGGEGTVRKDPLALKHWDIDDVTAIGETQKDLIESAFLALKPGG 234

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           I+V+S C+L + +++ +   + ++ P  VE   L   +        A + EG++ + P +
Sbjct: 235 ILVYSTCTLSQLENQHICYHLQQTYPDAVEFESLAELF---DGADKACTEEGFLHVWPQI 291

Query: 420 LEKIDGVSSGMDGFFAVALRRLI-------QPK 445
            +          GFF   +R+         QPK
Sbjct: 292 YDSE--------GFFVAKIRKKASVERVKKQPK 316


>gi|312871742|ref|ZP_07731830.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 3008A-a]
 gi|311092684|gb|EFQ51040.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 3008A-a]
          Length = 469

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQESPKKGFRLNPLKYDYTNVKYNLDHQIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KTARFWIQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|260783662|ref|XP_002586892.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae]
 gi|229272021|gb|EEN42903.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae]
          Length = 471

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 101/256 (39%), Gaps = 31/256 (12%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDV 271
           L        ++Q+  +++   +        VLD+CAAPGGKT  L   + +   V A D 
Sbjct: 220 LNDVMSDSIFLQNLPSTVAGHVLDPQPGERVLDMCAAPGGKTTHLATLMNNQGTVIAFDK 279

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAF------------------DYCPKKLFDAVLVD 313
           S+ +++K+  N  RL L        D                       P   FD VLVD
Sbjct: 280 SQGKVDKVMANARRLGLTCIQAYMFDGGKSASEAAVCEKDETSLGAPPYPPNTFDRVLVD 339

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           APCS+ G   + P +        +     +QR+L    +  +K G  +V+S C+L  +++
Sbjct: 340 APCSALG---QRPALGNKMKLKTLKSYPSYQRRLFPAAVQVLKTGCTLVYSTCTLTLEEN 396

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMD 431
           E  V+ +L + P  +ELVP             +L+ +    ++      +     S   D
Sbjct: 397 EGQVEWLLNTFPC-LELVPQTPYLGGPGLSGTSLTQDQLQMLQRFEPWGDNRGENSHPSD 455

Query: 432 ----GFFAVALRRLIQ 443
               GFF     +  +
Sbjct: 456 RDTIGFFIAKFIKRAR 471


>gi|303326186|ref|ZP_07356629.1| NOL1/NOP2/sun family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864102|gb|EFL87033.1| NOL1/NOP2/sun family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 282

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 16/261 (6%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +    ++           RL   P  +        G  ++QD S+ +P          +V
Sbjct: 25  LRAQGYEFEPEPFSPLCRRLCREPRPLGGSLAAFFGYIYIQDRSSMLPPLALAPRTGEAV 84

Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDY 301
           LD+CA+PG K+  L         V A + +  RL  LR NL + +L  A           
Sbjct: 85  LDVCASPGSKSGFLAQLTGPTGFVLANEPAPARLGTLRANLHQCNLLQAATCSYGGENLP 144

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                ++A+ +D PCS  GT  +HP VL     D +      QR+LL    S + PGG +
Sbjct: 145 LVPASWNAIQLDPPCSGWGTAEKHPRVLKLWQGDKLNSLIGLQRRLLRHAASLLAPGGRL 204

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C+ ++ ++E  V        +  E +P     +            G +R+  +   
Sbjct: 205 VYSTCTTNEAENEAQVCFAEEELGLVRETLP----PFPGFAWEERPDGAGTLRVDGEKSR 260

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
                     GF+   LR+  
Sbjct: 261 AQ--------GFYLALLRKTA 273


>gi|167386908|ref|XP_001737947.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165899045|gb|EDR25748.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 610

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 92/259 (35%), Gaps = 46/259 (17%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279
              Q+  + +P  L       SVLD+CAAPG KT+QL+        V A D  K+R   L
Sbjct: 122 ISRQEVVSMLPAILLDVHEGSSVLDICAAPGSKTSQLVEMVGPTGCVVANDADKQRSYLL 181

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
                RL      I    A +       FD +L D PC+  GTIR++ D        +  
Sbjct: 182 THQTKRLSAPHIVITNYRAQELSFNGFQFDRMLCDVPCTGDGTIRKNVDARTKWHVMNAY 241

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--- 395
                Q  ++   +  VK GG  V+S CSL+  + E VV ++LR+    +EL+       
Sbjct: 242 TLHREQLDIMKHVLCHVKVGGKFVYSTCSLNPIEDEAVVAELLRTYGDSIELIDARPLLP 301

Query: 396 -------------------------------AYWKSIDMAMALSPEGWIRITPDMLEKID 424
                                          A+    + A     E  +RI P       
Sbjct: 302 TLKFSEGVSEWKVFDKHFTVMKDKNDNIPITAFPPKPEEAAKFHLEYTLRILPH------ 355

Query: 425 GVSSGMDGFFAVALRRLIQ 443
                  GFF     +  +
Sbjct: 356 --QQNTGGFFTAVFIKKGE 372


>gi|195340889|ref|XP_002037045.1| GM12703 [Drosophila sechellia]
 gi|194131161|gb|EDW53204.1| GM12703 [Drosophila sechellia]
          Length = 744

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + IP  +        VLD+CAAPG KTAQ             +    V A DV
Sbjct: 158 ISRQEAVSMIPPIVLDVQPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320
              R   L     RL+     +   D+  +                FD +L D PCS  G
Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSAFPNLLTTKPDGSKAILKFDKILCDVPCSGDG 277

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T+R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++
Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337

Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398
           ++ +   +ELV                                               + 
Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQVFTRFEEVPESLHTIIRPGMFP 397

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              D    +  E  +R+ P + +          GFF   L +  Q
Sbjct: 398 LPADEMAKIGLEKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434


>gi|282934635|ref|ZP_06339878.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii 208-1]
 gi|281301210|gb|EFA93511.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii 208-1]
          Length = 781

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 15/297 (5%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           +P+ FK++ +     ++  +   A  +       +      +      +  P  G+    
Sbjct: 326 LPKEFKDKYQKLLA-KKADSFFTALEAEPKKAFRLNPLKADYQEVSYDLSKPVDGVADAY 384

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264
             E       +  G  + QD SA  P +  G      VLDLCAAPGGK+      + +  
Sbjct: 385 YGEISGRDIEWVSGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNKG 444

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            + A ++S  R + LR N++R       +   D      K    FDA+LVDAPCS  G  
Sbjct: 445 LLVANEISTSRAKNLRENIERGGADNCLVTNEDTSHLAQKFPRFFDAILVDAPCSGEGMF 504

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++ D +     + +++ +  Q+++L + +  +KPGG +++S C+   ++ EE+   ++ 
Sbjct: 505 RKNHDAVTYWSQEYVLECSNRQKEILNEAVKMLKPGGSLLYSTCTYAPEEDEEICAYLVN 564

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                +    ++ A          L   E   R  P+               F    
Sbjct: 565 ELGFKLVETKVSVASQGVPAWGENLDGIEYARRFWPEDEIGEGQ--------FLAKF 613


>gi|255550109|ref|XP_002516105.1| williams-beuren syndrome critical region protein, putative [Ricinus
           communis]
 gi|223544591|gb|EEF46107.1| williams-beuren syndrome critical region protein, putative [Ricinus
           communis]
          Length = 497

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 163/457 (35%), Gaps = 57/457 (12%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +SG  AR  ++++L  V++               S     S R++    A+V  TL+ LP
Sbjct: 30  RSGFYARREAANVLKRVLQGHA---QRRATGSIKSLVYSPSVRNKRATFALVCQTLKHLP 86

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            I  VL+     +L       ++L+ +    IL+  ++             +++   R  
Sbjct: 87  VIKDVLE--SAGALNTHSKKKEELMYIVAYDILFGQEIPLVVGDVEKFLLRRKNDLQRAL 144

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           AK++     +   + + L +        P    +         +    S          +
Sbjct: 145 AKVLVRKKAKTIDDLLALYR--------PPDVSKPCYVRVNTLKSDVDSALLELGRQFTV 196

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                +                  +      + + P   +G  +VQ  ++S+        
Sbjct: 197 QKDDMVPNL--------------FVLPPNSDLHNHPLVLDGSIFVQGKASSMVAVALDPK 242

Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               VLD C+APG KT  +   +    ++ A +++K R+++L   +        ++   D
Sbjct: 243 PGWEVLDACSAPGNKTVHVAALMRGKGRIIACELNKDRIKRLEDTVRLSGAANIEVRHCD 302

Query: 298 A----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIVKS---ACFQRKL 347
                    P     A+L+D  CS +GT  +  D L      D +++ +    A FQ+K 
Sbjct: 303 FLNLNPRDSPFSKIRAILLDPSCSGSGTAAQRLDHLLPSHATDPNNMERLKKLAAFQKKA 362

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMA 404
           L   +SF      VV+S CS+++ ++E+V+  +L    S    +         W    ++
Sbjct: 363 LAHALSFPAVE-RVVYSTCSINQTENEDVIISILPIAASHGFQLV---TPFPQWHRRGLS 418

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +    E  +R  P   ++         GFF     + 
Sbjct: 419 VFEGSEHLLRTDPVEDKE---------GFFIALFVKK 446


>gi|309803987|ref|ZP_07698069.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163906|gb|EFO66171.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 11V1-d]
          Length = 469

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELISAYQESPKKGFRLNPLKYDYTNVKYNLDHQIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 MMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIQ----KTARFWIQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|210623494|ref|ZP_03293839.1| hypothetical protein CLOHIR_01789 [Clostridium hiranonis DSM 13275]
 gi|210153552|gb|EEA84558.1| hypothetical protein CLOHIR_01789 [Clostridium hiranonis DSM 13275]
          Length = 433

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 102/290 (35%), Gaps = 38/290 (13%)

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215
               Y +++  AI    +      L    D  T         L       K     +   
Sbjct: 22  FIKSYEQKKTTAIRVNTMKMEKDRLKGLLDCNTEDIPWAEEGLYYDEDECKPGRNPLHDS 81

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272
             +     ++Q+ SA   V          VLD+CAAPGGK+      + +   + + +++
Sbjct: 82  GAY-----YLQEPSAMSVVPKADIQEGDIVLDMCAAPGGKSTYILSKLNNTGLLVSNEIN 136

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             R++ L  NL+R       I   D+       +  FD V++DAPCS  G  R+    + 
Sbjct: 137 ATRIKALGENLERFGAANAIITNTDSKGLLKVFEGYFDKVIIDAPCSGEGMFRKDQVAID 196

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                 +++    Q +++  G   +K GG +V+S C+  K++ E+++            +
Sbjct: 197 DWSYAKVIECRDIQHEIIRDGYKMLKNGGTLVYSTCTFAKEEDEDIIDGFAEEFENAEVV 256

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +                      R+ P  ++          G F   + +
Sbjct: 257 LKE--------------------RLWPHKVKGE--------GHFVAKIIK 278


>gi|134111476|ref|XP_775654.1| hypothetical protein CNBD6080 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258316|gb|EAL21007.1| hypothetical protein CNBD6080 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 722

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 94/312 (30%), Gaps = 75/312 (24%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            ++      +     F                  Q+A + IP        +   LD+CAA
Sbjct: 120 WQVNAPKRVVRKTEPFKNFQRFLVGETEVGNLSRQEAVSMIPPLFLDVQPHHHCLDMCAA 179

Query: 252 PGGKTA--------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC- 302
           PG KTA            S   + A D   +R   L     R+      +   DA  +  
Sbjct: 180 PGSKTAQIIEALNPHHTTSTGLLIANDSDYKRTHMLVHQTGRMPSKGLMVTNFDASMFPA 239

Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                     FD +L D PCS  GT+R++ ++       D       Q ++L + ++ +K
Sbjct: 240 IKLEEGKNLQFDRILADVPCSGDGTLRKNMEIWAKWGVADGNSLHSLQLRILERAMNMLK 299

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM--------ALS 408
           PGG +V+S CSL+  + E V+   L        LV ++S   +                 
Sbjct: 300 PGGRLVYSTCSLNPSEDESVIAAALLKH-TQFSLVDVSSDLPELKRRPGMDKWKVATQEG 358

Query: 409 PEGWIR-------------------------ITPD---------------MLEKIDGVSS 428
            +G I                            P                   ++     
Sbjct: 359 KDGEIHWYETFDEYRKAVDEGKEKEKGEKGKGLPSSLWAPENVESLNLNRCSMRLLPHDQ 418

Query: 429 GMDGFFAVALRR 440
              GFF   L R
Sbjct: 419 DTGGFFVAVLER 430


>gi|194764406|ref|XP_001964321.1| GF21493 [Drosophila ananassae]
 gi|190619246|gb|EDV34770.1| GF21493 [Drosophila ananassae]
          Length = 737

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 101/285 (35%), Gaps = 72/285 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + IP  +        VLD+CAAPG KTAQ             +    V A DV
Sbjct: 158 ISRQEAVSMIPPIVLDVKPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320
              R   L     RL+     +   D+  +                FD +L D PCS  G
Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLLVTNPDNSKAILKFDKILCDVPCSGDG 277

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T+R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++
Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337

Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398
           L+ +   +ELV                                               + 
Sbjct: 338 LKDADGALELVDAGHLVPGLKYKPGMTNWKLATKEVDQIFESFDEVPESLHTIIRPGMFP 397

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              D    +  E  IR+ P + +          GFF   L +  Q
Sbjct: 398 LPADEMAKIGLEKCIRVLPHLQDSG--------GFFVAVLEKRRQ 434


>gi|332217198|ref|XP_003257743.1| PREDICTED: putative methyltransferase NSUN6 [Nomascus leucogenys]
          Length = 469

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 43/270 (15%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++EK++ N   L L +      D                     + FD 
Sbjct: 260 GEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDIVEDTEGEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  T    ++      QRKL    +  +KP G++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMACTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---------TPDML 420
             ++EE V   L   P  + L P              LS E   ++          PD  
Sbjct: 377 LAENEEQVAWALTKFPC-LRLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTD 435

Query: 421 EKIDGVSSGMD----------GFFAVALRR 440
                 +   D          GFF     +
Sbjct: 436 VDSLREARREDMLRLANKDSIGFFIAKFVK 465


>gi|160880923|ref|YP_001559891.1| Fmu (Sun) domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160429589|gb|ABX43152.1| Fmu (Sun) domain protein [Clostridium phytofermentans ISDg]
          Length = 488

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 125/337 (37%), Gaps = 52/337 (15%)

Query: 148 IPEWFKERLENFYGKE-RVLAISDACISPLYIDLT----VKFDIETWAHKLNAVMLPTGG 202
           +PE FK+R++     E               + +        + E  +      +     
Sbjct: 5   LPEDFKKRMQEMLSDEYEAYEKCYEEKHRGGLRINTLKLKNEEFEKISPYEIKQVPFIPN 64

Query: 203 IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259
               +  E     P +  G++++Q+ SA  P  L        VLDLCAAPGGK+ +    
Sbjct: 65  GYYYQEKEQPARHPYYFGGLYYIQEPSAMTPASLLPVEPGDKVLDLCAAPGGKSTELAAK 124

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           +     + + D+S  R + L  N++   +                    FD +LVDAPCS
Sbjct: 125 LQGKGVLVSNDISNSRAKALLKNIELFGVRNPVVISEAPAKLVNTFTGYFDKILVDAPCS 184

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P ++   +   +      Q++++L  +  +KPGG +++S C+   +++E  +
Sbjct: 185 GEGMFRKSPSIIKNWEQYGVDYYNKLQKEIILLAVKMLKPGGYLLYSTCTFSTEENEGTI 244

Query: 378 QKVLRSSPIPVELVPL---------------------------NSAYWKSIDMAMALSPE 410
           + +L   P  +E+VP                            N+  +K  D       +
Sbjct: 245 KFLLEEEP-DMEIVPAIWNSLENQPDYPLRGEDKDRLENMKNRNNVSYKGFDFGKPEWVD 303

Query: 411 G------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G       +R+ P  +E          G +   LR+ 
Sbjct: 304 GPKELVHTLRLWPQRIEGE--------GHYVALLRKK 332


>gi|73948934|ref|XP_855665.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 isoform
           2 [Canis familiaris]
          Length = 328

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 59  EPVYLSPSFDNVLPRYLFLQNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQ 118

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--------------FDYCPKKLFDA 309
            +V ALD    ++EK++ N   L L +      D                     + FD 
Sbjct: 119 GEVIALDKISNKVEKIKQNALLLGLNSIKAFCFDGTKALKFDMVEKAEGNPPFLPESFDR 178

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  +    ++      QRKL    +  +KPGG++V+S C++ 
Sbjct: 179 ILLDAPCSGMG---QRPNMACSWTLKEVTSYQPLQRKLFTVAVQLLKPGGVLVYSTCTIT 235

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P +        M   LS E   ++     +     S  
Sbjct: 236 LAENEEQVAWALRTFPC-LQLQPQDPQIGGEGMMGAGLSFEQLKQL--QRFDPSVVPSWD 292

Query: 430 MD---------------------GFFAVALRR 440
            D                     GFF     +
Sbjct: 293 TDIDSLRDARIEDMIGLANKDCIGFFIAKFIK 324


>gi|57040455|ref|XP_544240.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 isoform
           1 [Canis familiaris]
          Length = 469

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--------------FDYCPKKLFDA 309
            +V ALD    ++EK++ N   L L +      D                     + FD 
Sbjct: 260 GEVIALDKISNKVEKIKQNALLLGLNSIKAFCFDGTKALKFDMVEKAEGNPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  +    ++      QRKL    +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMACSWTLKEVTSYQPLQRKLFTVAVQLLKPGGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P +        M   LS E   ++     +     S  
Sbjct: 377 LAENEEQVAWALRTFPC-LQLQPQDPQIGGEGMMGAGLSFEQLKQL--QRFDPSVVPSWD 433

Query: 430 MD---------------------GFFAVALRR 440
            D                     GFF     +
Sbjct: 434 TDIDSLRDARIEDMIGLANKDCIGFFIAKFIK 465


>gi|303276849|ref|XP_003057718.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460375|gb|EEH57669.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 473

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 109/331 (32%), Gaps = 60/331 (18%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            A  +     L    D   W   +    L             + +      G    Q+A 
Sbjct: 146 RAHTTRPPRALRWYPDALAWQVDVPKDALKKSDDFRALHRFLVQANE---TGAITRQEAV 202

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------------TALDVSKRR 275
           + IP  L     +  VLD+CAAPG KT QL+                     A D S +R
Sbjct: 203 SMIPPLLLDVKPSHRVLDMCAAPGSKTFQLLEMLHHKASGETGAEAPAGVVVANDASLQR 262

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCP------------KKLFDAVLVDAPCSSTGTIR 323
              L     R +  A  +    A  +                LFD VL D PCS  GT+R
Sbjct: 263 ANLLTHQTKRSNSPALIVTNHQAQKFPFLIEAGKGGDERRPILFDRVLADVPCSGDGTLR 322

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + PD+         V     Q ++    +  +K GG +V+S CSL+  + E VV  +LR 
Sbjct: 323 KSPDLWKKWTPGSGVDLHGLQLEIATHAVRLLKVGGRLVYSTCSLNPLEDEAVVAALLRR 382

Query: 384 SPIPVELVPLNSAYWK------------SIDMAMALSPEGWIR--------ITP------ 417
               ++LV ++                         +P G  R        + P      
Sbjct: 383 GKGSLKLVDVSEKLPGLKRRPGMRTWHVGDVFGWHETPNGDGRRQRNVCETMWPPSGKAA 442

Query: 418 -----DMLEKIDGVSSGMDGFFAVALRRLIQ 443
                D   +I        GFF VA+ ++ +
Sbjct: 443 SEMRLDRCVRILPHLDDTGGFFIVAIDKVAE 473


>gi|32698918|ref|NP_872349.1| putative methyltransferase NSUN6 [Homo sapiens]
 gi|74751440|sp|Q8TEA1|NSUN6_HUMAN RecName: Full=Putative methyltransferase NSUN6; AltName:
           Full=NOL1/NOP2/Sun and PUA domain-containing protein 1;
           AltName: Full=NOL1/NOP2/Sun domain family member 6
 gi|18676896|dbj|BAB85051.1| unnamed protein product [Homo sapiens]
 gi|23272784|gb|AAH35778.1| NOL1/NOP2/Sun domain family, member 6 [Homo sapiens]
 gi|55665125|emb|CAH70493.1| NOL1/NOP2/Sun domain family, member 6 [Homo sapiens]
 gi|55665475|emb|CAH73205.1| NOL1/NOP2/Sun domain family, member 6 [Homo sapiens]
 gi|119606597|gb|EAW86191.1| NOL1/NOP2/Sun domain family, member 6, isoform CRA_a [Homo sapiens]
 gi|167887637|gb|ACA06032.1| NOL1/NOP2/Sun domain family, member 6 variant 1 [Homo sapiens]
 gi|167887638|gb|ACA06033.1| NOL1/NOP2/Sun domain family, member 6 variant 2 [Homo sapiens]
 gi|312150490|gb|ADQ31757.1| NOL1/NOP2/Sun domain family, member 6 [synthetic construct]
          Length = 469

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 43/270 (15%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++EK++ N   L L +      D                     + FD 
Sbjct: 260 GEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  T    ++      QRKL    +  +KP G++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMACTWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   L   P  ++L P              LS E   ++       +    + 
Sbjct: 377 LAENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTD 435

Query: 430 MD-------------------GFFAVALRR 440
           MD                   GFF     +
Sbjct: 436 MDSLREARREDMLRLANKDSIGFFIAKFVK 465


>gi|160889217|ref|ZP_02070220.1| hypothetical protein BACUNI_01638 [Bacteroides uniformis ATCC 8492]
 gi|317479576|ref|ZP_07938703.1| NOL1/NOP2/sun family protein [Bacteroides sp. 4_1_36]
 gi|156861224|gb|EDO54655.1| hypothetical protein BACUNI_01638 [Bacteroides uniformis ATCC 8492]
 gi|316904238|gb|EFV26065.1| NOL1/NOP2/sun family protein [Bacteroides sp. 4_1_36]
          Length = 485

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 16/232 (6%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269
           P F  G ++VQ+AS+    Q          + +LDLCAAPGGK+        +G+ + A 
Sbjct: 76  PLFHAGCYYVQEASSMFVEQALRRYVGEGPVVMLDLCAAPGGKSTHARSVLPAGSLLVAN 135

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDV 328
           +V + R + L  NL +       +   D  D+      FD +L D PCS  G  R+ P  
Sbjct: 136 EVIRNRSQVLAENLTKWGHSGVVVTNNDPADFSSLTDFFDVILTDVPCSGEGMFRKDPVA 195

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           +     +++      QR+++      +K GGI+++S C+ + +++EE ++ +       V
Sbjct: 196 VSEWSGENVEICWQRQRRIVTDIWPCLKSGGILIYSTCTYNTKENEENIRWIRDEFGAEV 255

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             + +++ +  + ++          R  P   +          GFF   LR+
Sbjct: 256 LPLEISTDWNITGNLLSGED-FPAYRFLPHRTKGE--------GFFLAVLRK 298


>gi|126466321|ref|YP_001041430.1| ribosomal RNA methyltransferase NOP2 [Staphylothermus marinus F1]
 gi|126015144|gb|ABN70522.1| ribosomal RNA methyltransferase NOP2 [Staphylothermus marinus F1]
          Length = 344

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 139/344 (40%), Gaps = 32/344 (9%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
             +N ILR +  E   + +++A       +  ER     G +  + + +A   PL   + 
Sbjct: 8   PSINDILRDIYIEPSIISKKLASKYGYLPYMVERYIKILGFKDTVDLLNAFEKPLKPVVR 67

Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWVQ-DA 228
                 D +T   +L  +      I+       ++S P          + +G ++V  D+
Sbjct: 68  TNTLLIDEDTLYERLEQLGFKLERIKWSRESYRVISAPKSPSIGATHEYLKGYYYVHRDS 127

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285
           ++ +PV+L        VLD CAAPGGK   +     +  +V A D+   RL+ L  ++ R
Sbjct: 128 ASLVPVKLLMHEFEGDVLDACAAPGGKATYIAQILNNKYEVLANDLVLYRLKSLIGHIAR 187

Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           + +    +   DA        K +D VL+D PCS  GTI             D+ +    
Sbjct: 188 MRIKNIVVTWSDARKLPILIDKRYDRVLLDVPCSGEGTIMFDQGRKTRTSLKDLARIVRR 247

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI------PVELVPLNSAY 397
           + ++LL GI  +   G++ +  CS+  +++E VV KVL           PV+L   +   
Sbjct: 248 EIEILLSGIDMLTKNGVLAYVTCSIAPEENEYVVAKVLEMRDDIEIVKPPVKLFDWSPWL 307

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              + +      +  IRI P +          M G     LRR+
Sbjct: 308 KSYLGINFPNEFKYCIRIWPHI--------HSMIGLTTCLLRRI 343


>gi|309809849|ref|ZP_07703699.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169801|gb|EFO71844.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 469

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQESPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQSRQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KTARFWIQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|294938750|ref|XP_002782180.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239893678|gb|EER13975.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 649

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 134/443 (30%), Gaps = 96/443 (21%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75
             V +    +   L   +       ++  D+  +   +    R+   ID          +
Sbjct: 288 DKVKQHHTPVDMFLHRYFQAHR--AINADDRAWISDHMYELFRWQGLIDH----CTPKPV 341

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
             +        R+                                         R     
Sbjct: 342 STRG-------RLYTY----------------------------------LTSDRWRSNA 360

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET------- 188
                     + +P+    RL +  G ++ + +S          L V  +  +       
Sbjct: 361 QNRRLDPHIRTSMPKELFGRLADSLGTDKAVEVSSVLNERPVTFLRVNINQSSRSDMMKF 420

Query: 189 -WAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
             + +++     T  + L    + ++  LP +  G   +QD S+ I             L
Sbjct: 421 LLSKEISVEKTATSPVGLVINDKKLLLDLPEYRSGAVEIQDESSQIMALQVVV------L 474

Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           D CA  GGK       + +   +   DV    L   R  L R  +    ++         
Sbjct: 475 DYCAGSGGKSLVFGPNMQNTGHLYLHDVRDSMLRDARKRLRRAGIRNYTLLYPRHPTLHK 534

Query: 304 K--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGI 360
                 D VL D PCS TG +RR+PD  W    + +      QR+++   + ++KP GG 
Sbjct: 535 MLLGKCDWVLCDVPCSRTGVLRRNPDAKWMYSDEKLFHFVALQREIVRNSLRYLKPKGGK 594

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+   S+  +++   +Q + R   + +   P+++                         
Sbjct: 595 LVYCTNSILDEENILQIQHLCRFHELVLSEEPMHA------------------------- 629

Query: 421 EKIDGVSSGMDGFFAVALRRLIQ 443
                 S GMDGFF+  L R   
Sbjct: 630 ---MPQSKGMDGFFSATLERKST 649


>gi|325282112|ref|YP_004254654.1| Fmu (Sun) domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324313921|gb|ADY34474.1| Fmu (Sun) domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 455

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 29/301 (9%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI-----ETWAHKLNAVMLPTGG 202
           +P  F+ER+      E   A   A  +   + + +           +  +   + +    
Sbjct: 4   LPALFEERMRKLLP-EESEAFFAALQTEPPVSIRLNPGKPVPISRLFPDEQIGLPVSWCE 62

Query: 203 IRLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFG---TLNNLSVLDLCAAPGGK--- 255
                    + +L P    G ++VQ+AS+     +FG     + + VLDLCAAPGGK   
Sbjct: 63  SAYYLKSRPVFTLDPCLHSGTYYVQEASSMFLYHIFGQILPAHPVRVLDLCAAPGGKSTL 122

Query: 256 TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDA 314
            A  + SG+ + A +V + R   L+ N+ +       +   D    +  K  FD ++VDA
Sbjct: 123 IASRLSSGSLLVANEVIRSRAGILKENMIKWGTSHVVVTNNDPADFHHLKGAFDIIVVDA 182

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+ P  +   +  ++   +  Q+++L      +KPGG +V+S C+ +  ++E
Sbjct: 183 PCSGEGMFRKDPGAIQEWNESNLQLCSERQQRILADIWPCLKPGGFLVYSTCTYNPGENE 242

Query: 375 EVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
            ++++++R      +E+ PL          A            P  +           GF
Sbjct: 243 AILERLIRKYGARSIEIAPLFPGIVPGNSTA------HCYHFYPHRIPGE--------GF 288

Query: 434 F 434
           F
Sbjct: 289 F 289


>gi|332795722|ref|YP_004457222.1| Fmu (Sun) domain-containing protein [Acidianus hospitalis W1]
 gi|332693457|gb|AEE92924.1| Fmu (Sun) domain protein [Acidianus hospitalis W1]
          Length = 350

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 128/311 (41%), Gaps = 31/311 (9%)

Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196
           ++      +   P+W  ERL    G+E +  I +           +K ++      L + 
Sbjct: 53  DMTINPDPMLSFPKWIFERLYALLGEEGIKGIYN--HKTWARVNELKANVNDVIRLLESE 110

Query: 197 MLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                   +          + I     F EG+   QD S+ + V          +L++ +
Sbjct: 111 GYKVKRTEINFLLEIESADKRISDSTAFKEGLLIPQDKSSVLAVMTLDPKPYEKILEIGS 170

Query: 251 APGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF 307
           APG K     QL  + + + ++D+S++R+ + +  +++  +   ++I  DA    P +  
Sbjct: 171 APGVKSSLIQQLTRNKSFLISIDISEKRIMQQKKLMEKWGVSNVELIVADALHL-PIRKA 229

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D V +DAPCS++GTI   P V+   +   + + +  Q  +L +    +K    VV+  CS
Sbjct: 230 DKVFIDAPCSNSGTINVDPSVVLRLNKRKLHELSSIQIGILREASK-LKT--QVVYITCS 286

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L  ++ E+VV+K  R+      LV + +   +    +       W+R+      +     
Sbjct: 287 LFPEEGEKVVEKFGRN------LVRIPNEGHEGYKKSRV-----WLRVF-----RTYPHK 330

Query: 428 SGMDGFFAVAL 438
              +GFF   L
Sbjct: 331 DFSEGFFIAKL 341


>gi|119719409|ref|YP_919904.1| Fmu (Sun) domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524529|gb|ABL77901.1| Fmu (Sun) domain protein [Thermofilum pendens Hrk 5]
          Length = 389

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 101/240 (42%), Gaps = 24/240 (10%)

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
               S+     F EG+ + Q   + + V+L       +VLD+CAAPGGKT      +   
Sbjct: 167 YRAVSLRETRYFDEGLIYHQSLPSMVAVRLLDPQPGWTVLDMCAAPGGKTTHAAQLMGDH 226

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTG 320
            +V A+D +K +++ +  +  RL L +   +  D+        K   DAV++D PC++ G
Sbjct: 227 GEVIAVDRTKSKVDTIMEHARRLGLKSVKGLVYDSRYISEYLDKDSVDAVIIDPPCTALG 286

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
                P + + R  DD++K + +QR+ L +    ++ GG ++F+ C++   ++E  V   
Sbjct: 287 V---RPKLWYERGFDDVLKLSDYQRQFLREAAKVLRRGGRLLFTTCTISPYENEFNVI-- 341

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     + L         +   L   G ++  P              GFF     +
Sbjct: 342 -----FAASYLGLKPLPLSFPPVKSGLLGTGSLQFVPH--------EHDTPGFFIALFEK 388


>gi|312874209|ref|ZP_07734243.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2052A-d]
 gi|311090279|gb|EFQ48689.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2052A-d]
          Length = 469

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIRYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|312872920|ref|ZP_07732980.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311091442|gb|EFQ49826.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 469

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|309806235|ref|ZP_07700249.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167382|gb|EFO69547.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 03V1-b]
          Length = 469

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|291563902|emb|CBL42718.1| tRNA and rRNA cytosine-C5-methylases [butyrate-producing bacterium
           SS3/4]
          Length = 301

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 148/313 (47%), Gaps = 27/313 (8%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM--- 197
              +IP + +E L+  YG+E    I     +   + L V     D  T    L       
Sbjct: 1   MEQMIPGFLEEMLKKQYGEEVFAKILAGYQARRPVTLRVNPLKADRNTVEQALTGAGIAF 60

Query: 198 ----LPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
                    + ++   E  I  LP + EG  ++Q  S+ +P          SVLD+ AAP
Sbjct: 61  KDVSWYEDAMIIEGAREPEIQELPIYKEGGIYLQSLSSMLPPLFLAPKAGESVLDMAAAP 120

Query: 253 GGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           GGKT Q+       A++TA + +K R EKL+ NL++   +   ++  DA        FD 
Sbjct: 121 GGKTTQMAAMTGNQAQITACEKNKARSEKLKYNLEKQGAFGTYVMVEDARKLDDFFSFDR 180

Query: 310 VLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
           +L+DAPCS +GT+     V  T+   + + +SA  Q +LL + +  +K G  +++S CS+
Sbjct: 181 ILLDAPCSGSGTVEVRDGVCRTKISKELVERSARTQEELLKKALKLLKSGHEMIYSTCSI 240

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
            K+++E ++++VL+S+    ELVP+   + K + +     P G + + PD L +      
Sbjct: 241 LKEENEGLLKRVLKSAGG--ELVPIGEEWTKELPLLPNAMP-GTLLVGPDELFE------ 291

Query: 429 GMDGFFAVALRRL 441
              GFF   +R+ 
Sbjct: 292 ---GFFVAKIRKK 301


>gi|325068809|ref|ZP_08127482.1| tRNA/rRNA cytosine-C5-methylase [Actinomyces oris K20]
          Length = 253

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ V R       LL           L +RD     A+   TLR   R DA++   
Sbjct: 2   ALEVLTRVRRDDAFANLLLPELLE---TADLDRRDAGFATALTYGTLRLQGRYDAMIAAC 58

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
               L R   ++  +LR+   Q++ + VA +A V   V+ A      R  A  VN++LRR
Sbjct: 59  TDRPLERIDPAVLDVLRLGAHQLMGMRVAQHAAVSTTVDLATTSCG-RGAATFVNAVLRR 117

Query: 131 VSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAISDACI 173
           +S   ++                 A     PEW  + L           E + AI  A  
Sbjct: 118 LSGRDLDSWMDELRRDAPDKTAALARTQSHPEWIVKALRQALVTHGRSDEELEAILAADN 177

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215
           +   + L  +  +        A         ++  P  I  L
Sbjct: 178 ADPEVALCARPGLIAPEALAKAARKADRAHDVEPRPGRISPL 219


>gi|21355201|ref|NP_652007.1| CG6133 [Drosophila melanogaster]
 gi|74872722|sp|Q9W4M9|NSUN2_DROME RecName: Full=tRNA (cytosine-5-)-methyltransferase CG6133
 gi|7290467|gb|AAF45921.1| CG6133 [Drosophila melanogaster]
 gi|16769650|gb|AAL29044.1| LD45754p [Drosophila melanogaster]
          Length = 746

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + IP  +        VLD+CAAPG KTAQ             +    V A DV
Sbjct: 158 ISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320
              R   L     RL+     +   D+  +                FD +L D PCS  G
Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILKFDKILCDVPCSGDG 277

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T+R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++
Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337

Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398
           ++ +   +ELV                                               + 
Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFP 397

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              D    +  E  +R+ P + +          GFF   L +  Q
Sbjct: 398 LPADEMAKIGLEKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434


>gi|67624589|ref|XP_668577.1| protein nucleolar (1B671) [Cryptosporidium hominis TU502]
 gi|54659786|gb|EAL38349.1| protein nucleolar (1B671) [Cryptosporidium hominis]
          Length = 681

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 121/352 (34%), Gaps = 66/352 (18%)

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210
                L  F          +         L+    +  +     +  +     +L +L  
Sbjct: 80  HPLHSLLEFLLNTETEKSYNNNAIFNLKRLSKNCKL--YLTTEYSRKMLKKESQLAKLHS 137

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------- 259
            IVS   F  G    Q+  + +P           VLDLC+APG K+ Q+           
Sbjct: 138 FIVSQDEF--GTLSSQELVSMLPCICLDPKPGHFVLDLCSAPGSKSTQILDMILSSRDDQ 195

Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL---------- 306
                    +   D+S +RL+ L   L R+      I  +DA  +   K           
Sbjct: 196 LGIPCKKGVLICNDLSSKRLDTLSSRLSRIPSPNVLITCIDASFFPTFKPSKTTITSLFQ 255

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +LVD+ CS  GT+R++PD+      +  +     Q  LL +    +K GG +V+S C
Sbjct: 256 FDRILVDSICSGDGTLRKNPDIWTIWRPEKALSLHKKQVSLLSRAFKLLKNGGKLVYSTC 315

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--------WKSIDMAMALSPEGWIRIT-- 416
           SL+  ++E V+  +LR  P    + P N            ++  +   L  +  +++   
Sbjct: 316 SLNPIENEAVISTLLRKFPDAKLITPTNLDEREFEISKGLRTWGVHFELKEQDKLQLFDT 375

Query: 417 ----PD------------------------MLEKIDGVSSGMDGFFAVALRR 440
               PD                           ++    +   GFF   +++
Sbjct: 376 LDKVPDTPFKEKLTESMFPNKEWYESDNFMKCFRVLPHRNDTGGFFFAVVQK 427


>gi|282858544|ref|ZP_06267715.1| NOL1/NOP2/sun family protein [Prevotella bivia JCVIHMP010]
 gi|282588669|gb|EFB93803.1| NOL1/NOP2/sun family protein [Prevotella bivia JCVIHMP010]
          Length = 451

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 24/315 (7%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY---IDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +PE F+    N  G+E    +        Y   I L            + A +       
Sbjct: 4   LPEAFETYTRNLMGEELYNTLIRGLNEEDYPTSIRLNPYKPCRVNLEIVKAPVPWCKDAY 63

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI-- 260
                 +    P F  G ++VQ+AS+    Q+        +  LDLCAAPGGKT  +   
Sbjct: 64  YLNTRPAFTFDPLFHAGSYYVQEASSMFIDQIIRQYITEPILALDLCAAPGGKTTCVRAA 123

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318
               + + A +   +R + L  N+ +       +      D+   K LFD ++ D PCS 
Sbjct: 124 LPKESILIANEPMCKRAQILSENILKFGHDNVAVTNNYPKDFQKTKLLFDLIIADVPCSG 183

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+  + +     +++ K    QR ++      +KPGGI+++S C+ +  ++EE V 
Sbjct: 184 EGMFRKDANAIEEWSEENVEKCWRLQRSIIEDIWDNLKPGGILIYSTCTFNAHENEENVA 243

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT---PDMLE----------KIDG 425
            +L       E +P+      +I  ++  +P  +  +    P+M            +   
Sbjct: 244 WILSQF--NAESIPVEVKEDWNITGSLIGNPFQYKELHSSSPNMQSPICHSNFFVYRFIP 301

Query: 426 VSSGMDGFFAVALRR 440
             +  +G F  ALR+
Sbjct: 302 GKTQGEGLFMAALRK 316


>gi|242280710|ref|YP_002992839.1| Fmu (Sun) domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123604|gb|ACS81300.1| Fmu (Sun) domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 418

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 22/272 (8%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASASI 232
           +    D+      L A            +   +   P           G  ++QD S+ +
Sbjct: 11  VCSPKDVAAVEELLRAQGFEFRPEPFYSMARILEKEPFPLGESVAARFGRIYIQDRSSML 70

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           P  +        VLD+CAAPG KT   A+L+     V A + S  RL  LR NL ++   
Sbjct: 71  PPLMLAPKEGDVVLDMCAAPGSKTGLLARLVGRDGFVLASEPSSDRLALLRQNLRKVQAV 130

Query: 290 AEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               +  ++     P   +  + +D PCS  GT+ ++P  +     +  V     QRKLL
Sbjct: 131 NTATVHYESQKLPLPPSSWKTIQLDPPCSGWGTLNKNPKAMEVWKGEKTVPLVNLQRKLL 190

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    + PGG +V+S C+ + Q++EE  +       +  EL  L      +I   +  +
Sbjct: 191 TKAYELLAPGGRLVYSTCTTNVQENEEQTRFATEE--LGFELFDLPRPEGFTIADPLLPN 248

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +G +R+           S G  GF+   LR+
Sbjct: 249 MDGVLRV---------DGSGGGQGFYLCGLRK 271


>gi|169867458|ref|XP_001840308.1| tRNA (cytosine-5-)-methyltransferase [Coprinopsis cinerea
           okayama7#130]
 gi|116498618|gb|EAU81513.1| tRNA (cytosine-5-)-methyltransferase [Coprinopsis cinerea
           okayama7#130]
          Length = 765

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 117/349 (33%), Gaps = 86/349 (24%)

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
            +    P  + +    D   W   +   +L       K     +        G    Q+ 
Sbjct: 97  FEGQKIPPPVQIPWYPDGLAWQFNVPKKVLRKQPEFKKFHSFLVFETE---VGNISRQEG 153

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-------------IVSGAKVTALDVSKRR 275
            + IP        +  V+D+CAAPG KTAQ+              +    + A D   +R
Sbjct: 154 VSMIPPLFLDVEPHHKVMDMCAAPGSKTAQILEALHAQDTVTSSSIPSGLLVANDSDNKR 213

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------LFDAVLVDAPCSSTGTIRRH 325
              L     RL   A  +  +DA +Y   K          +FD +L D PCS  GT+R++
Sbjct: 214 THLLIHQSARLPSPALMVTNLDASNYPSIKIPTPRGMRTLMFDRILCDVPCSGDGTMRKN 273

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVK--PGGIVVFSNCSLDKQDSEEVVQKVLRS 383
             +  T    D       Q ++LL+ +  +   P   +V+S CSL+  ++E VV   L  
Sbjct: 274 IGIWKTWSPGDANGLHSLQVRILLRAMRLLNYEPSSKIVYSTCSLNPVENEAVVADALIQ 333

Query: 384 SPIPVELVPLNSAYWK-------------------------------------------- 399
           +P   EL+ ++  + +                                            
Sbjct: 334 NP-DFELMDVSDRFPQLIRRPGMTEWRPTTDRECETTFESYEEFIASSKVDEAMKAKLSR 392

Query: 400 ---SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                D    L+    +RI P + +          GFF   LRR  +PK
Sbjct: 393 SHWPPDGVEKLNLPYCMRIYPHLQDSG--------GFFVAVLRR--KPK 431


>gi|325912131|ref|ZP_08174529.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 143-D]
 gi|325476081|gb|EGC79249.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 143-D]
          Length = 469

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIRYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|312875680|ref|ZP_07735681.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2053A-b]
 gi|311088934|gb|EFQ47377.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2053A-b]
          Length = 469

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGILVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|269859931|ref|XP_002649689.1| multisite-specific tRNA m(5)C methyltransferase [Enterocytozoon
           bieneusi H348]
 gi|220066884|gb|EED44354.1| multisite-specific tRNA m(5)C methyltransferase [Enterocytozoon
           bieneusi H348]
          Length = 528

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 114/327 (34%), Gaps = 43/327 (13%)

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208
           P  +  R+       R+          +   +    D   +                 + 
Sbjct: 33  PLAYTFRIVRNAHFTRITEFIKKNFFQICQPIECVKDTYIFYKHNQISNCSYDMDLYNQF 92

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAK 265
            E ++S      G    Q+  + IPV+L     N  V + CAAPG KT Q    +     
Sbjct: 93  TEFLISNTAV--GNIQRQEIVSMIPVELLSIQKNHFVYEPCAAPGSKTKQILEKLNGTGL 150

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGT 321
           + A DVSK R+  L     + +     I   +A  +      K  FD +  D PCS  GT
Sbjct: 151 LVANDVSKSRVNILITESQKNNTLNLVITNDNAGSFPQSPMNKNFFDRICCDVPCSGDGT 210

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           +R++  +          +    Q K+L + +S +K GGI+ +S CSL+  ++E V+ + L
Sbjct: 211 VRKNMSIFNDWSVKRACQLIDLQIKILQRSLSTLKEGGILTYSTCSLNPLENEYVINRAL 270

Query: 382 RSSPIPVELVPLNSAYWKSIDMAM------------------------ALSPEGWIRITP 417
            + P    ++P  +    S                                 E  IRI P
Sbjct: 271 LNFPNCKIILPQEAFNLVSYTKDKTKLMIRKGIPFFQYTIDSKRYEYNDYELEKCIRIYP 330

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQP 444
                     +   GFF   +++  QP
Sbjct: 331 HD--------NDTGGFFIAIIQK--QP 347


>gi|46205808|ref|ZP_00048062.2| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 150

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VLVDAPC+ TGT RR+PD  W      +      Q ++L +    ++PGG +V+  CS
Sbjct: 24  DRVLVDAPCTGTGTWRRNPDAKWRLRPGSLSGRIAEQAEVLDRAARLLRPGGTLVYVTCS 83

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           L  ++++  V  +LR S   ++ V  +      +   +  +  G          ++    
Sbjct: 84  LLPEENDAAVDGLLRRSQGAIQAVATDLGSVPGLADKVRRTSRG---------IQMSPAL 134

Query: 428 SGMDGFFAVAL 438
           +G DGF+   L
Sbjct: 135 TGTDGFYVATL 145


>gi|195456962|ref|XP_002075365.1| GK17644 [Drosophila willistoni]
 gi|194171450|gb|EDW86351.1| GK17644 [Drosophila willistoni]
          Length = 742

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 129/417 (30%), Gaps = 78/417 (18%)

Query: 91  AQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
            + +  D   +          K       + + +  I   +         +    +++  
Sbjct: 32  YEEIKRDNPFFIK---YYNLQKICATEDEWTQFLACIRDNLPTTFRVTGFKDEAKALLKI 88

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210
              E    +      L           + L    +   +   L    +       +    
Sbjct: 89  IETEMFSEYVRAVAELHQKLPEQVERPLCLPWYPNGMAYQLHLTRKDIRRSEPLFRLHNF 148

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------L 259
            IV       G    Q+A + IP  +        VLD+CAAPG KTAQ            
Sbjct: 149 LIVETTA---GSISRQEAVSMIPPIVLDVKPTDKVLDMCAAPGSKTAQLIEALHAAPEDH 205

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFD 308
            +    V A DV   R   L     RL+     +   D+  +                FD
Sbjct: 206 RIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLIRTQPDGSKSILKFD 265

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L D PCS  GT+R++PD+    +          Q +++ +G   ++ GG +V+S CSL
Sbjct: 266 KILCDVPCSGDGTLRKNPDIWMKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSL 325

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPL----------------------------------- 393
           +  ++E V+Q++++ S   +ELV                                     
Sbjct: 326 NPIENEAVLQRIIKDSDGALELVDAGHLVPGLKYNPGMTNWKLATKDVDQVFSTFDEVPE 385

Query: 394 -------NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                   + +    D    L  E  +R+ P + +          GFF   + +  Q
Sbjct: 386 NLHTIIRPAMFPLPSDELTKLGLEKCLRVLPHLQD--------TGGFFVAVIEKRRQ 434


>gi|289192431|ref|YP_003458372.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus sp.
           FS406-22]
 gi|288938881|gb|ADC69636.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus sp.
           FS406-22]
          Length = 266

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 31/271 (11%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFG 238
           + E    +L    +      L    E      SI S P +  G +  Q  S+ IP  +  
Sbjct: 12  NPEILKERLENKGVVLEKTFLDYAFEVKEAPFSIGSTPEYLFGYYMPQSISSMIPPVVLN 71

Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
              N  +LD+CAAPGGKT  L   + +   + A+++S+ R++ L+ N++R+ +    II 
Sbjct: 72  PEENSFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISRSRVKALKSNINRMGVLNTIIIN 131

Query: 296 MDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            D   Y       +  FD +L+DAPCS      ++ +V      +DI   +  Q++L+  
Sbjct: 132 ADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYCSLRQKELIDI 187

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
           GI  +K  G +V+S CS++ +++EEV++ +L+     VEL+ + +  +K I++       
Sbjct: 188 GIDLLKKDGELVYSTCSIEIEENEEVIKYILQKR-DDVELINIKTDEFKGINIKEGHIK- 245

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           G +R+ P               FF   L+++
Sbjct: 246 GTLRVFPPNEP-----------FFIAKLKKI 265


>gi|187734612|ref|YP_001876724.1| Fmu (Sun) domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187424664|gb|ACD03943.1| Fmu (Sun) domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 322

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 19/235 (8%)

Query: 212 IVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGKTA--QLIVSGAKVT 267
             SLP +  G ++  D S+                 LD+CAAPGGK+   Q  VS  +  
Sbjct: 77  PGSLPDYECGYYYPLDLSSVWETAPLAHLPFRPERCLDMCAAPGGKSILAQTRVSPQEHV 136

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325
           + +V+ +RL  LR NL R             D +       FD +L DAPCS    + + 
Sbjct: 137 SNEVNPKRLGILRHNLLRCGFTNLYTQRLRPDQWAELAPGCFDLILADAPCSGQSLLAKG 196

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
                  ++     +A  QR +LL  +  + PGG ++++ C+   +++E  V  +L+  P
Sbjct: 197 IPNPGCFNSSVTGGNAKRQRGILLAALRCLAPGGFLLYTTCTYAPEENERNVLYLLKRHP 256

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                        +      +L+ E   R+ P              G F   LR+
Sbjct: 257 DL-----HTITVPELEHFRSSLTQEACYRLMPFHGAGA--------GGFTCLLRK 298


>gi|327313464|ref|YP_004328901.1| NOL1/NOP2/sun family protein [Prevotella denticola F0289]
 gi|326945487|gb|AEA21372.1| NOL1/NOP2/sun family protein [Prevotella denticola F0289]
          Length = 443

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 101/260 (38%), Gaps = 11/260 (4%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL- 246
               +L    +P              +         +    ++S+ +           + 
Sbjct: 53  KVNAELKPQPIPWCREGYWLAVRPSFTFDPLLHAGVYYVQEASSMFLSHALCHWVKHPVM 112

Query: 247 --DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FD 300
             DLCAAPGGKT         G+ + + +   +R + L  N+ +       +        
Sbjct: 113 ALDLCAAPGGKTTCARTVLPEGSFLFSNEPIGKRAQILAENVQKFGHEDVAVTNNYPGDY 172

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              + LFD ++ D PCS  G  R+ P  +    T ++      QR ++      +KPGGI
Sbjct: 173 RKSRLLFDVIMADVPCSGEGMFRKDPQAIAEWSTQNMENCRQLQRSIIADIWDNLKPGGI 232

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++S C+ +  + EE V  +L+      EL+P+ +    +I  ++  +P    R  P  +
Sbjct: 233 LIYSTCTFNAHEDEENVAWILKEYG--AELLPVPTEKAWNITGSLIGNPMQDARAFP--V 288

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +     +  +GFF   +R+
Sbjct: 289 YRFIPGRTRGEGFFMAVIRK 308


>gi|157817079|ref|NP_001100837.1| NOL1/NOP2/Sun domain family, member 6 [Rattus norvegicus]
 gi|149021140|gb|EDL78747.1| NOL1/NOP2/Sun domain family, member 6 (predicted) [Rattus
           norvegicus]
 gi|171846678|gb|AAI62024.1| Nsun6 protein [Rattus norvegicus]
          Length = 476

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E I   P F     G  ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPIYLSPSFDNVLSGYIFLQNLPSTVVAHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++ KL+ N   L L++      DA                    + FD 
Sbjct: 260 GEVIALDKILTKVTKLKQNASLLGLHSIRAFCFDATKALKLEVMDGVDGAPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  T    ++      QRKLL   +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGLG---QRPNMACTWTLKEVTSYQPLQRKLLNVAVRLLKPGGVLVYSTCTVT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P          +   LS E   ++     +        
Sbjct: 377 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMLGAGLSLEQLKQL--QRFDPCVVPLES 433

Query: 430 MD---------------------GFFAVALRR 440
           MD                     GFF     +
Sbjct: 434 MDTNSLGDARREDVIWLANKDCIGFFIAKFLK 465


>gi|115479703|ref|NP_001063445.1| Os09g0471900 [Oryza sativa Japonica Group]
 gi|47848376|dbj|BAD22235.1| proliferating-cell nucleolar protein-like [Oryza sativa Japonica
           Group]
 gi|113631678|dbj|BAF25359.1| Os09g0471900 [Oryza sativa Japonica Group]
 gi|125606042|gb|EAZ45078.1| hypothetical protein OsJ_29718 [Oryza sativa Japonica Group]
          Length = 880

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 42/310 (13%)

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200
               ++++ +            +    I     +     L  +   E     +  +    
Sbjct: 77  WDDFMNMLRKPLPATFRINASCQFYQDICSQLENDFRKSLETEVSDEHEEDAIRPLPWYP 136

Query: 201 GGIRLKELPESIV-----SLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLD 247
           G +        +      +L GF E +           Q+A + +P        +  +LD
Sbjct: 137 GNLAWHLNFSRMQLRRNQALEGFHEFLKRENEVGNITRQEAVSMVPPLFLNVQPDHHILD 196

Query: 248 LCAAPGGKTAQ-----------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
           +CAAPG KT Q            ++  A V A DV  +R   L     R+      +   
Sbjct: 197 MCAAPGSKTFQLLEMIHQSTKPGMLPNALVVANDVDVQRCNLLIHQTKRMCTANLIVTNH 256

Query: 297 DAFDYC------------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +A ++                    +  FD VL D PCS  GT+R+ PD+    +     
Sbjct: 257 EAQNFPGCNLAKFSSETCTDESKLQRLEFDRVLCDVPCSGDGTVRKAPDMWRKWNAGMGN 316

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q ++ ++GI  +K GG +V+S CS++  ++E VV ++LR     VEL+ +++   
Sbjct: 317 GLHRLQVEIAMRGIGLLKVGGRIVYSTCSMNPVENEAVVAEILRRCGDSVELLDVSNELP 376

Query: 399 KSIDMAMALS 408
           + +      +
Sbjct: 377 ELVRRPGLST 386


>gi|114629648|ref|XP_507683.2| PREDICTED: putative methyltransferase NSUN6 isoform 3 [Pan
           troglodytes]
          Length = 469

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 43/270 (15%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V ALD    ++EK++ N   L L +      D                     + FD 
Sbjct: 260 GEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  T    ++      QRKL    +  +KP G++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMASTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   L   P  ++L P              LS E   ++       +    + 
Sbjct: 377 LAENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTD 435

Query: 430 MD-------------------GFFAVALRR 440
           MD                   GFF     +
Sbjct: 436 MDSLREARREDMLRLANKDSIGFFIAKFVK 465


>gi|297808641|ref|XP_002872204.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297318041|gb|EFH48463.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 514

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 89/466 (19%), Positives = 169/466 (36%), Gaps = 70/466 (15%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +S + AR  ++++L  ++R          +    S     S R++    A+V  TL+ L 
Sbjct: 39  RSALYARREAANVLRSILRGDA---ERRAVASIKSLVFSPSVRNKRATFALVCETLKHLT 95

Query: 62  RIDAV--LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            I  V  +  VL S   R++  +  +       IL+  D                     
Sbjct: 96  VIKDVLEIANVLNSKWKRQEPLVYII----CYDILFGKDTPSIG---------------- 135

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
                          EK  +  + A +S +      +      +   L+  +  + P Y+
Sbjct: 136 -------------DAEKFLMRHKDALLSGLATLLVRKKVESVDQLLGLSKLNGHLKPRYV 182

Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASI 232
            +  +K D+++   +L           +           + +    A G  ++Q  ++S+
Sbjct: 183 RVNTLKMDVDSAVQELEKHYTVQRDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKASSM 242

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
                       VLD C+APG KT  L   +    K+ A ++++ R+++L   +      
Sbjct: 243 VAAALQPEAGWEVLDACSAPGNKTIHLAALMQGQGKIIACELNEERVKRLEHTIKLSGAS 302

Query: 290 AEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVL--------WTRDTDDI 337
              +   D     PK        A+L+D  CS +GTI    D L           D+  +
Sbjct: 303 NIQVFHGDFLGLNPKDPSFVKVRAILLDPSCSGSGTITDRLDHLLPSHSADNMNYDSMRL 362

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            K A FQ+K L   +SF +    VV+S CS+ + ++E+VV  VL  +      +      
Sbjct: 363 HKLAVFQKKALAHALSFPQVE-RVVYSTCSIHQIENEDVVSSVLALASSLGFKLATPFPQ 421

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           W+   + +    E  +R+ P   ++         GFF     +  +
Sbjct: 422 WQRRGLPVFAGSEHLLRMDPVEDKE---------GFFIALFVKTNK 458


>gi|182413908|ref|YP_001818974.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1]
 gi|177841122|gb|ACB75374.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1]
          Length = 425

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 133/403 (33%), Gaps = 50/403 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ +L+ +          L   +    +  L    +  +   V V  R+L  +D      
Sbjct: 12  AAQILASISTDHR-ADLALRFYFERHRY--LRPAAKRHISHAVFVYFRWLSWLD------ 62

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                P+     +              +   A +           +    A         
Sbjct: 63  -----PKASPQKR--------------IEQAAKLHERFTADPASIKVEALAA-------- 95

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
                  +   +A    +P     +L+        L I         +  T+        
Sbjct: 96  -----RAVPHWLASEVELPADTLRQLQRDP----ALWIRVRRGHAAEVTKTLVHCSPAVL 146

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
                 + P          + +     F  G + +QD ++ I           +  D CA
Sbjct: 147 PAWLTGLEPQLSAFTFTGTQDLFRTEPFDAGEFEIQDLASQIVGHACAPQPRETWWDACA 206

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL 306
             GGK   L   + +   + A D + RRLE L+    R  ++       D     P K  
Sbjct: 207 GEGGKMLHLADLMANKGLIWATDRNARRLETLKHRAARAQVFNYRTALWDGSARLPTKTK 266

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +LVDAPCS  GT +R+P   WT   DD+ + A  Q  LL      +KP G +++S C
Sbjct: 267 FDGILVDAPCSGVGTWQRNPQARWTATLDDVNQLATTQLTLLNLVAGSLKPRGRLIYSVC 326

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
           +L + ++  V      + P  +E +PL +A   +     A SP
Sbjct: 327 TLTRSETTAVADAFSAAHP-ELEPLPLFNAAGVADPGPRAPSP 368


>gi|313673939|ref|YP_004052050.1| fmu (sun) domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940695|gb|ADR19887.1| Fmu (Sun) domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 371

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 20/232 (8%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267
           ++  L  F +G + +QD ++ +   L     N  +LDLCA  GGK         +   + 
Sbjct: 155 NVRQLQEFKKGFFEIQDEASQLVFNLVAPKPNEKILDLCAGTGGKSILLQSCSFNTLDLH 214

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           + D+SK RL  L+     L L  + + +           +D VL+DAPCS +G IRR  D
Sbjct: 215 SYDISKSRLAVLQKRAKILGLKVKIVEK------PSLHYYDKVLIDAPCSGSGVIRRDVD 268

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            L   D D +++    QR LL + I+FV+ GG++++  CS  ++++EE ++ +L      
Sbjct: 269 NLLRMDKDRLLELVKTQRMLLNKAINFVRKGGVIIYFTCSFLRKENEENIEYILNEYRN- 327

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             L  +        ++   L+ + + +              GMDGFF   LR
Sbjct: 328 --LRLVEVCDILDANIVEKLNLKSYFKTYTKYY--------GMDGFFGAVLR 369


>gi|326931128|ref|XP_003211686.1| PREDICTED: e3 ubiquitin-protein ligase TRIM50-like [Meleagris
           gallopavo]
          Length = 818

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 96/243 (39%), Gaps = 17/243 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
           +            +  G   +QD ++ +P  L        V+D CAAPG KT+    ++ 
Sbjct: 542 VFPPQTDFHDNRLYTSGHIILQDKASCLPAFLLSPSAGSHVIDACAAPGNKTSHLAAILK 601

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCS 317
           +   + A DV  +RL  +   L R  + +  + + D     P+         +L+D  CS
Sbjct: 602 NKGHIFAFDVDTKRLATMNTMLMRAGVTSFKLAQQDFLTVDPQDPKYSKVKYILLDPSCS 661

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
            +G + R          + +   A FQR++L   + F      + +S CS+ ++++E+VV
Sbjct: 662 GSGMVARLSLEEAAPSAERLQALAGFQRRVLSHALRFPAVQ-RLAYSTCSVHREENEDVV 720

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             VL+       LV    + W    +A     E  +R +P              GFF   
Sbjct: 721 HAVLQEQGSAFRLVNAFPS-WPCRGLATFPGAECCLRASPADTL--------TQGFFVAV 771

Query: 438 LRR 440
           L R
Sbjct: 772 LER 774


>gi|218202311|gb|EEC84738.1| hypothetical protein OsI_31727 [Oryza sativa Indica Group]
          Length = 880

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 42/310 (13%)

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200
               ++++ +            +    I     +     L  +   E     +  +    
Sbjct: 77  WDDFMNMLRKPLPATFRINASCQFYQDICSQLENDFRKSLETEVSDEHEEDAIRPLPWYP 136

Query: 201 GGIRLKELPESIV-----SLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLD 247
           G +        +      +L GF E +           Q+A + +P        +  +LD
Sbjct: 137 GNLAWHLNFSRMQLRRNQALEGFHEFLKRENEVGNITRQEAVSMVPPLFLNVQPDHHILD 196

Query: 248 LCAAPGGKTAQ-----------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
           +CAAPG KT Q            ++  A V A DV  +R   L     R+      +   
Sbjct: 197 MCAAPGSKTFQLLEMIHQSTKPGMLPNALVVANDVDVQRCNLLIHQTKRMCTANLIVTNH 256

Query: 297 DAFDYC------------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +A ++                    +  FD VL D PCS  GT+R+ PD+    +     
Sbjct: 257 EAQNFPGCNLAKFSSETCTDESKLQRLEFDRVLCDVPCSGDGTVRKAPDMWRKWNAGMGN 316

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q ++ ++GI  +K GG +V+S CS++  ++E VV ++LR     VEL+ +++   
Sbjct: 317 GLHRLQVEIAMRGIGLLKVGGRIVYSTCSMNPVENEAVVAEILRRCGDSVELLDVSNELP 376

Query: 399 KSIDMAMALS 408
           + +      +
Sbjct: 377 ELVRRPGLST 386


>gi|194888017|ref|XP_001976848.1| EG:EG0007.9 [Drosophila erecta]
 gi|190648497|gb|EDV45775.1| EG:EG0007.9 [Drosophila erecta]
          Length = 738

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + IP  +        VLD+CAAPG KTAQ             +    V A DV
Sbjct: 158 ISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320
              R   L     RL+     +   D+  +                FD +L D PCS  G
Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLLTTKPDGSKAILKFDKILCDVPCSGDG 277

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T+R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++
Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337

Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398
           ++ +   +ELV                                               + 
Sbjct: 338 IKEADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFDEVPESLHTIIRPGMFP 397

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              D    +  +  +R+ P + +          GFF   L +  Q
Sbjct: 398 LPADEMAKIGLDKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434


>gi|145642283|ref|ZP_01797848.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae R3021]
 gi|145273039|gb|EDK12920.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae 22.4-21]
          Length = 276

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
           LVN++LRR  RE+ E+  +      ++ PEWF ++L+  Y   R +  ++    P+++ +
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191

Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234
             + + +ET+   L    +                 ++  LP F EG   VQD SA    
Sbjct: 192 NSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251

Query: 235 QLFGTLN 241
            L     
Sbjct: 252 TLLEPKM 258


>gi|261879945|ref|ZP_06006372.1| NOL1/NOP2/sun family protein [Prevotella bergensis DSM 17361]
 gi|270333368|gb|EFA44154.1| NOL1/NOP2/sun family protein [Prevotella bergensis DSM 17361]
          Length = 487

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 107/310 (34%), Gaps = 24/310 (7%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
               +P  F+E      G +                + +     T      +  LP    
Sbjct: 1   MDMTLPRDFEEYTRRLLGDDLYATFIKGLAQEAPTSIRLNPFKTTLCQHGPSAGLPQASP 60

Query: 204 RLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL--SVLDLCAAPGG 254
                         +    P F  G+++VQ+AS+     +   L +    +LDLCAAPGG
Sbjct: 61  VPWCGQGVYLADRPNFTFDPLFHAGLYYVQEASSMFIDYILRQLIHDPVLMLDLCAAPGG 120

Query: 255 KTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKKLFDAV 310
           KT        +G+ + A +  + R   L  N+ +       +              FD V
Sbjct: 121 KTTAARAALPTGSLILANEPVRLRASILSENVQKFGHPDVVVTHNFPKDYRQSGLRFDVV 180

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  G  R+    +      ++ K    QR ++      +  GG++++S C+ + 
Sbjct: 181 LADVPCSGEGMFRKDEGAVGEWSMQNVEKCWQLQRSIIADIWPCLAEGGLLIYSTCTFNA 240

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
            ++EE V  + R+       +     +  +  +           I    + +     +  
Sbjct: 241 HENEENVDWIARTLGADFVEIETPPEWGITGSL-----------IDDHPVCRFIPGKTKG 289

Query: 431 DGFFAVALRR 440
           +GFF   LR+
Sbjct: 290 EGFFVAVLRK 299


>gi|195477202|ref|XP_002100129.1| EG:EG0007.9 [Drosophila yakuba]
 gi|194187653|gb|EDX01237.1| EG:EG0007.9 [Drosophila yakuba]
          Length = 746

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + IP  +        VLD+CAAPG KTAQ             +    V A DV
Sbjct: 158 ISRQEAVSMIPPIVMDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320
              R   L     RL+     +   D+  +                FD +L D PCS  G
Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLLTTMPDGSKAILKFDKILCDVPCSGDG 277

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T+R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++
Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337

Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398
           ++ +   +ELV                                               + 
Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTNFDEVPESLHTIIRPGMFP 397

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              D    +  +  +R+ P + +          GFF   L +  Q
Sbjct: 398 LPADEMAKIGLDKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434


>gi|56118618|ref|NP_001008125.1| NOP2/Sun domain family, member 6 [Xenopus (Silurana) tropicalis]
 gi|51703758|gb|AAH81330.1| nsun6 protein [Xenopus (Silurana) tropicalis]
          Length = 467

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 105/270 (38%), Gaps = 43/270 (15%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F     G  ++Q+  +++   +        +LD+CAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLSGYIFLQNLPSAVVSHVLNPQPGERILDMCAAPGGKTTHIATLMKDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---------------DYCPKKLFD 308
            +V A+D    ++EK++ N   L L        ++                     K FD
Sbjct: 260 GEVIAMDKIANKVEKIKHNASVLKLKCIKAFCFNSTKAVRDQNSPSEQGDGPPFLPKSFD 319

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L+DAPCS  G   + P+++      ++      QRKL    +  ++PGG +V+S C++
Sbjct: 320 RILLDAPCSGMG---QRPNMVCPFSLKELTSYQPLQRKLFTAAVELLRPGGTLVYSTCTV 376

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPD------- 418
              ++EE V   L++ P  +EL P          +   LSP+      R  P        
Sbjct: 377 TLSENEEQVAWALKTFPC-LELQPQEPHVGGEGMLGAELSPDHLKLLQRFDPCRSEFCSV 435

Query: 419 --------MLEKIDGVSSGMDGFFAVALRR 440
                       I   +    GFF     +
Sbjct: 436 DLNHCSAEHSNTIPLANKDTIGFFIARFVK 465


>gi|259500608|ref|ZP_05743510.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners DSM 13335]
 gi|302191297|ref|ZP_07267551.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners AB-1]
 gi|259167992|gb|EEW52487.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners DSM 13335]
          Length = 469

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 117/301 (38%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I          K    FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNLFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|258406573|ref|YP_003199315.1| Fmu (Sun) domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257798800|gb|ACV69737.1| Fmu (Sun) domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 421

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 16/242 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIV 261
           L E P ++        G  ++QD S+ +P          +VLDLCA+PG KT   AQL+ 
Sbjct: 43  LSEGPYALGRCVAARFGRVYIQDKSSMVPPLCLAPEPGDTVLDLCASPGSKTGLLAQLVG 102

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320
               V A + +  RLE LR N+  L L     + E         + F  +LVDAPCS  G
Sbjct: 103 PQGVVLANEPNTSRLETLRANMRHLALPNVLTVSERGEDLPLAPETFSHILVDAPCSGWG 162

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T  ++P+V       ++      QR LL +      PGG +V+S C+ + +++EE +   
Sbjct: 163 TAAKNPNVRQVWHDGNVHGLVELQRNLLHRAAHLAVPGGRIVYSTCTTNPRENEEQIAWA 222

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +      ++LV    +   S+  A     +G +++           +S   GFF   LR+
Sbjct: 223 VEH----LDLVVDPLSPLPSVSCAPQGLKQGVLQV--------QEEASESQGFFVALLRK 270

Query: 441 LI 442
             
Sbjct: 271 KT 272


>gi|212703769|ref|ZP_03311897.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098]
 gi|212672737|gb|EEB33220.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098]
          Length = 505

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 156/476 (32%), Gaps = 89/476 (18%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
           + +L  +L+          L++RD+ L   +   TLR   R+  VL  VL   L      
Sbjct: 60  QAALQQVLEDTARRQEG-GLAERDRHLAAELAYGTLRMENRLAFVLGKVLRQPLKLPLPL 118

Query: 82  LQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140
            + L  V+   +L+LD    +AV+  AV+ A++       AK+VN  LR V R    +  
Sbjct: 119 RRLLA-VAAYGLLFLDRLPAHAVLHTAVDLARQLYGP-GLAKVVNGSLRSVQRLGDAVQA 176

Query: 141 RI----------------------------------AGISIIPEWFKERLENFYGKERVL 166
                                               A    +  W     +  YG E   
Sbjct: 177 PDFYAGPADEESFFAEDAAAAKKLRGLALPEEELRLARFHAVSRWLVALWQQAYGDEACR 236

Query: 167 AISDACISPLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLP--- 216
           A+     +  +  L V           +       A       +    +  +    P   
Sbjct: 237 ALLARSGTRPWQALRVNASRPQAAALKQALLACAPADGPAPQAVGRWGVAFAPGKTPDAV 296

Query: 217 -------GFAEGVWWVQDASASIPVQLFGTLNN----LSVLDLCAAPGGKTAQLIVSGAK 265
                     +G    Q A++   +   G  +       V D CA  GGK+ QL+  G  
Sbjct: 297 QGEPLARLLEQGALSQQAAASQEVMAALGLEDWLGRGWPVWDACAGYGGKSVQLLEQGGD 356

Query: 266 V-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
           V    D S  RL ++  +  RL L    +   DA      +    ++ D PCS  G + R
Sbjct: 357 VRLCTDRSFSRLRQVPGHCSRLGLALPHLALADASRPPVSRWQGGIIADVPCSGLGVLAR 416

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            PD+        + + A  QR +L    + ++PG  + +  C+L   ++E+ V  +L   
Sbjct: 417 RPDLRRRP-RTALAEHADLQRAILKALAAQLEPGAELAYITCTLHPLENEQAVDWLLAED 475

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                LV                        TP     +       +G FA  LRR
Sbjct: 476 SGLERLVQWQ---------------------TPHDHPWL-------EGMFAARLRR 503


>gi|145642282|ref|ZP_01797847.1| sun protein [Haemophilus influenzae R3021]
 gi|145273038|gb|EDK12919.1| sun protein [Haemophilus influenzae 22.4-21]
          Length = 166

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 25/184 (13%)

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDII----EMDAF---DYCPKKLFDAVLVDAPCSS 318
           + ALDV   RL+++  NL RL+  A  +     + D +          FD +L+D+PCS+
Sbjct: 1   MIALDVESHRLKRVEENLARLNQQAIVVCGDASKPDEWLAEIGKSAAKFDRILLDSPCSA 60

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           TG IRRHPD+ W R   DI +    Q+K+L      +KP G+++++ CS+  +++ E +Q
Sbjct: 61  TGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQ 120

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             L +     EL+ L     KS             +  P          +  DGF+   L
Sbjct: 121 AFLNAH-ADAELLSLPFGDDKSAV---------GFQFIPQ--------PNSGDGFYYAKL 162

Query: 439 RRLI 442
            +  
Sbjct: 163 LKRA 166


>gi|325860336|ref|ZP_08173458.1| NOL1/NOP2/sun family protein [Prevotella denticola CRIS 18C-A]
 gi|325482215|gb|EGC85226.1| NOL1/NOP2/sun family protein [Prevotella denticola CRIS 18C-A]
          Length = 443

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 101/260 (38%), Gaps = 11/260 (4%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL- 246
               +L    +P              +         +    ++S+ +           + 
Sbjct: 53  KVNAELKPQPIPWCREGYWLAIRPSFTFDPLLHAGVYYVQEASSMFLSHALRHWVKHPVM 112

Query: 247 --DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FD 300
             DLCAAPGGKT         G+ + + +   +R + L  N+ +       +        
Sbjct: 113 ALDLCAAPGGKTTCARTVLPEGSFLFSNEPIGKRAQILAENVQKFGHEGVAVTNNYPGDY 172

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              + LFD ++ D PCS  G  R+ P  +    T ++      QR ++      +KPGGI
Sbjct: 173 RKSRLLFDVIMADVPCSGEGMFRKDPQAIAEWSTQNMENCRQLQRSIIADIWDNLKPGGI 232

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +++S C+ +  + EE V  +L+      EL+P+ +    +I  ++  +P    R  P  +
Sbjct: 233 LIYSTCTFNAHEDEENVAWILKEYG--AELLPVPTEKAWNITGSLIGNPMQDTRAFP--V 288

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +     +  +GFF   +R+
Sbjct: 289 YRFIPGRTRGEGFFMAVIRK 308


>gi|237713993|ref|ZP_04544474.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D1]
 gi|262407045|ref|ZP_06083594.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_22]
 gi|294644852|ref|ZP_06722592.1| NOL1/NOP2/sun family protein [Bacteroides ovatus SD CC 2a]
 gi|294809779|ref|ZP_06768463.1| NOL1/NOP2/sun family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229445817|gb|EEO51608.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D1]
 gi|262355748|gb|EEZ04839.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_22]
 gi|292639790|gb|EFF58068.1| NOL1/NOP2/sun family protein [Bacteroides ovatus SD CC 2a]
 gi|294443019|gb|EFG11802.1| NOL1/NOP2/sun family protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 510

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 9/231 (3%)

Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
           P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+         G+ + A +
Sbjct: 92  PLFHAGCYYVQEASSMFVEQVLRQYVTGPVKMLDLCAAPGGKSTHARSVLPEGSLLVANE 151

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329
           V + R + L  NL +       +   D  D+      FD +L D PCS  G  R+ P  +
Sbjct: 152 VIRNRSQILAENLMKWGHPDVVVTNNDPADFAALPSFFDVILTDVPCSGEGMFRKDPVAV 211

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
                +++      QR+++      +KPGGI+++S C+ + ++ EE  + + +       
Sbjct: 212 EEWSPENVEICWQRQRRIIGDIWDTLKPGGILIYSTCTFNTKEDEENARWIQQEYGAEPL 271

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            V +   +  + D+ +  + +G     P  +       +  +GFF  A R+
Sbjct: 272 TVQVQENWNITGDL-LPDNCDGSKSSIP--VYHFFPHKTKGEGFFLAAFRK 319


>gi|25143471|ref|NP_490830.2| hypothetical protein Y48G8AL.5 [Caenorhabditis elegans]
 gi|20198902|gb|AAK29904.3| Hypothetical protein Y48G8AL.5 [Caenorhabditis elegans]
          Length = 639

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 53/341 (15%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
           +E+L +         I +A  + + +  ++ +  E +   ++   + +  I  +     +
Sbjct: 84  REQLIHEMENRFFGKIMEAGDTAVCVPKSLPWYKEAYQTPMSRTAVRSHPILAQLHNFLV 143

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------- 264
                   G    Q+A + IP  L    +   VLDLCAAPG KT QL+            
Sbjct: 144 TEAEL---GNLSRQEAVSMIPPLLLAPTSEHFVLDLCAAPGSKTTQLLEMIHENEENPKG 200

Query: 265 KVTALDVSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPKK-------LFDAVLVDAPC 316
            V A DV  +R    +   L R    A  +   DA  +            FD VL D  C
Sbjct: 201 MVIANDVDMKRCYMLIHHTLKRFRTAACAVTCEDAARFPHISDSDGGLIQFDRVLADVIC 260

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  GT+R++P++       D +     Q  +  +G   +K GG +V+S CS++  + E V
Sbjct: 261 SGDGTLRKNPEIWKKWTPQDGLGLHRMQIAIARKGAQQLKVGGRMVYSTCSMNPIEDEAV 320

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMA------------------MALSPEGWIR---- 414
           V ++LR S   ++LV  +S   +                         +S E   +    
Sbjct: 321 VAQLLRDSKGSLKLVDTSSLLPELKRETGVVQWKVFDRDMKLYKSLEDISEEKMKKVIVS 380

Query: 415 -ITP-----------DMLEKIDGVSSGMDGFFAVALRRLIQ 443
            + P               +I   +    GFF   + ++ +
Sbjct: 381 SLFPPTEQEAKEMNLHFTMRITPHAQDTGGFFVALIEKVSE 421


>gi|213512774|ref|NP_001133271.1| NOP2/Sun domain family, member 5 [Salmo salar]
 gi|209148487|gb|ACI32940.1| methyltransferase NSUN5 [Salmo salar]
          Length = 524

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 158/446 (35%), Gaps = 38/446 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M     ++ +L  V RK+ ++  L+     DS F+ + Q     + A+V  T +F   + 
Sbjct: 1   MALYAKAAEILEKVERKQATVKTLV----YDSKFQNIKQ-----LFALVCETQKFSSILQ 51

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++    + L ++      L +V V  ++            A+    R +     A++ 
Sbjct: 52  EIIES---TKLLKQTKIKINLAKVLVYDLVIGKGLKCGGAWKALMMKHRSRLQAALARMK 108

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                  +++ +    +      +P + +        ++ +           Y+    + 
Sbjct: 109 IKQKVSRNQDLLSSSLQHPEGDQLPRYVRVNTLKTTVEDAIDYFKR--EGFSYLGQAYRL 166

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D      K     L    + +            +  G   +QD ++ +P  L        
Sbjct: 167 DDLNLKGKSFVGDLHLSDLLVFSPKTDFHDHNLYKAGHIILQDKASCLPAYLLNPPTGSH 226

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD CAAPG KT+    ++ +  ++ A D+  +RL  +   L R  +  + +   D    
Sbjct: 227 VLDACAAPGNKTSHLAAIMKNKGRLFAFDLDAKRLSTMSTLLLRAGVTCQQLANQDFLKV 286

Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF---QRKLLLQGISF 354
            P          +L+D  CS +G +    +   ++   D  +       Q   L   + F
Sbjct: 287 DPDGPQYKDVEYILLDPSCSGSGMVCLRDEASPSQKEQDKRRLQALAAFQLHCLNHALRF 346

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
            +    +V+S CS+  +++E+VV   L  +P    LVPL   + +     +       +R
Sbjct: 347 PRLQ-RLVYSTCSIHTEENEQVVAACLLQNPG-FRLVPLLQQWPERGLAPLT----KCLR 400

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
                        +   GFF   L R
Sbjct: 401 --------ASTTKTLTHGFFVALLER 418


>gi|288800928|ref|ZP_06406385.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332389|gb|EFC70870.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 464

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 115/309 (37%), Gaps = 22/309 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML----PTG 201
             +P+ F  +     G+ER + +           +       T A    A+        G
Sbjct: 1   MNLPKDFITQTRELLGEERFVLLQKGLEMAPSTSIRFNPFKVTSASVSTALAPQQVPWCG 60

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQ 258
                    +    P F  G ++VQ+AS+               L  LDLCAAPGGKT  
Sbjct: 61  EGYYLSERPNFTFDPLFHAGCYYVQEASSMFLYHVLKQVLPHQPLMALDLCAAPGGKTTL 120

Query: 259 LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314
           L     + + + A +    R   L  N+++       +    A DY      FD +L D 
Sbjct: 121 LRTLLPNESVLFANEAIYNRANILVENIEKFGHSDVIVTNNYAADYKKTDLAFDLILADV 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+  D +       + K    QR+++      +K  GI+++S C+ +  ++E
Sbjct: 181 PCSGEGMFRKDEDAINQWSCQYVEKCQQLQREIVSDIWHNLKENGILIYSTCTFNALENE 240

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           E V+ ++         + ++S++  +  +    +     R  P + +          G F
Sbjct: 241 ENVEWIIDELGAECIDIEIDSSWNITPAL---FNKVKGYRFLPGISKGE--------GLF 289

Query: 435 AVALRRLIQ 443
              LR+  +
Sbjct: 290 MCVLRKTSE 298


>gi|198467800|ref|XP_001354507.2| GA19379 [Drosophila pseudoobscura pseudoobscura]
 gi|198146114|gb|EAL31560.2| GA19379 [Drosophila pseudoobscura pseudoobscura]
          Length = 729

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 127/401 (31%), Gaps = 75/401 (18%)

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
                K       + + + SI   +         +    +++     +    +      L
Sbjct: 45  YYHLQKICHTEEEWTQFLESIRDNLPTTFRVTGFKGEAKALLNIIETQLFTEYVRAVAEL 104

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                      + L    +   +  +L    +       +     IV       G    Q
Sbjct: 105 HQKPPEQVERPLCLPWYPNGMAYQLQLTRKDIRRSEPLYRLHNFLIVETTA---GSISRQ 161

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDVSKRR 275
           +A + IP  +        VLD+CAAPG KTAQ             +    V A DV   R
Sbjct: 162 EAVSMIPPIVLDVKPTDKVLDMCAAPGSKTAQLIEALHASPEEHKIPPGFVLANDVDNNR 221

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRR 324
              L     RL+     +   D+  +                FD +L D PCS  GT+R+
Sbjct: 222 CYMLVHQAKRLNSPCLLVTNHDSSIFPNLLQSNEDGAKSVLKFDKILCDVPCSGDGTLRK 281

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           +PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++L+ +
Sbjct: 282 NPDIWTKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRILKDA 341

Query: 385 PIPVELVPL------------------------------------------NSAYWKSID 402
              +ELV                                             + +    +
Sbjct: 342 DGALELVDAGHLVPGLKYNPGMTDWKLATKEVDTVYTSFDEVPETLHTIIRPAMFPLPAE 401

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
               ++    +RI P + +          GFF   + +  Q
Sbjct: 402 DMAKINLNKCMRILPHLQD--------TGGFFVAVIVKRRQ 434


>gi|301783221|ref|XP_002927025.1| PREDICTED: putative methyltransferase NSUN6-like [Ailuropoda
           melanoleuca]
          Length = 469

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 47/272 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPSYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMRDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--------------FDYCPKKLFDA 309
            +V ALD    ++EK++ N   L L +      D                     + FD 
Sbjct: 260 GEVIALDKIPNKVEKIKQNALLLGLNSIKAFCFDGTKALQLDMVKDAEGKPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPCS  G   + P++  +    ++      QRKL    +  ++PGG++V+S C++ 
Sbjct: 320 VLLDAPCSGMG---QRPNMACSWTLKEVTSYQPLQRKLFTVAVELLRPGGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   LR+ P  ++L P          M   L+ E   ++     +        
Sbjct: 377 LAENEEQVAWALRTFPY-LQLQPQEPQIGGEGMMGAGLAFEQLKQL--QRFDPSVVPLRD 433

Query: 430 MD---------------------GFFAVALRR 440
            D                     GFF     +
Sbjct: 434 TDIDSLRDARVEDMIWLANKDCIGFFIAKFIK 465


>gi|281413929|ref|ZP_06245671.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
           luteus NCTC 2665]
          Length = 305

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 15/170 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR V+  ++  V  +      +L      +    L +RD      +   TLR L   DA
Sbjct: 64  PARRVAFGVVRSVHAEDAYANLVLPARIRQAR---LDRRDAGFATELAYGTLRGLGLYDA 120

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +L   +   L +    +   LR+   Q+L + V  +A +D  V   + +      +  VN
Sbjct: 121 ILTRCVDRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEVG-AGASGFVN 179

Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENFYGKER 164
           ++LRR++   +E                A  +  P W    L       R
Sbjct: 180 AVLRRIAERPLEEWLADVAPADGGDAALAVRTSHPVWIVRALRQALAAHR 229


>gi|195174007|ref|XP_002027774.1| GL21386 [Drosophila persimilis]
 gi|194115446|gb|EDW37489.1| GL21386 [Drosophila persimilis]
          Length = 730

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 127/401 (31%), Gaps = 75/401 (18%)

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
                K       + + + SI   +         +    +++     +    +      L
Sbjct: 45  YYHLQKICHTEEEWTQFLESIRDNLPTTFRVTGFKGEAKALLNIIETQLFTEYVRAVAEL 104

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                      + L    +   +  +L    +       +     IV       G    Q
Sbjct: 105 HQKPPEQVERPLCLPWYPNGMAYQLQLTRKDIRRSEPLYRLHNFLIVETTA---GSISRQ 161

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDVSKRR 275
           +A + IP  +        VLD+CAAPG KTAQ             +    V A DV   R
Sbjct: 162 EAVSMIPPIVLDVKPTDKVLDMCAAPGSKTAQLIEALHASPEEHKIPPGFVLANDVDNNR 221

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRR 324
              L     RL+     +   D+  +                FD +L D PCS  GT+R+
Sbjct: 222 CYMLVHQAKRLNSPCLLVTNHDSSIFPNLLQSNEDGAKSVLKFDKILCDVPCSGDGTLRK 281

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           +PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++L+ +
Sbjct: 282 NPDIWTKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRILKDA 341

Query: 385 PIPVELVPL------------------------------------------NSAYWKSID 402
              +ELV                                             + +    +
Sbjct: 342 DGALELVDAGHLVPGLKYNPGMTDWKLATKEVDTVYTSFDEVPETLHTIIRPAMFPLPAE 401

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
               ++    +RI P + +          GFF   + +  Q
Sbjct: 402 DMAKINLNKCMRILPHLQD--------TGGFFVAVIVKRRQ 434


>gi|242045024|ref|XP_002460383.1| hypothetical protein SORBIDRAFT_02g027340 [Sorghum bicolor]
 gi|241923760|gb|EER96904.1| hypothetical protein SORBIDRAFT_02g027340 [Sorghum bicolor]
          Length = 874

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 115/322 (35%), Gaps = 54/322 (16%)

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVM 197
                 I+PE   +   +   K              Y D+  + +    ++   ++    
Sbjct: 58  YYKEQQIVPEEEWDSFMSMLRKPLPATFRINASCQFYQDICSQLENDFRKSLETEVTDEH 117

Query: 198 LPTGGIRLKELPESIV--------------SLPGFAEGV--------WWVQDASASIPVQ 235
                  L   P ++               +L  F E +           Q+A + +P  
Sbjct: 118 EEDAIRPLPWYPGNLAWHLNFSRMQLRRNQALESFHEFLKRENEVGNITRQEAVSMVPPL 177

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-----------TALDVSKRRLEKLRCNLD 284
                 +  +LD+CAAPG KT QL+    +             A DV  +R   L     
Sbjct: 178 FLNVQPDHHILDMCAAPGSKTFQLLEMIHQSTKPGVLPNALVVANDVDVQRCNLLIHQTK 237

Query: 285 RLHLYAEDIIEMDAFDYC------------------PKKLFDAVLVDAPCSSTGTIRRHP 326
           R+      +   +A ++                    +  FD VL D PCS  GT+R+ P
Sbjct: 238 RMCTANLIVTNHEAQNFPGCNLAKFCSEVCMDEAKLQRLEFDRVLCDVPCSGDGTVRKAP 297

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           D+    +          Q ++ ++G+  +K GG +V+S CS++  ++E VV ++LR    
Sbjct: 298 DMWRKWNAGMGNGLHRLQVEIAMRGMGLLKVGGRMVYSTCSMNPVENEAVVAEILRRCGD 357

Query: 387 PVELVPLNSAYWKSIDMAMALS 408
            VEL+ +++   +        +
Sbjct: 358 SVELLDVSNELPELARRPGLST 379


>gi|332266242|ref|XP_003282123.1| PREDICTED: putative methyltransferase NSUN5-like [Nomascus
           leucogenys]
          Length = 310

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 23/268 (8%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D+     K   +      + +      +   P +  G   +QD ++ +P  L        
Sbjct: 14  DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 73

Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L R  +   ++ E D    
Sbjct: 74  VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 133

Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISF- 354
            P          +L+D  CS +G   R  +           +   A FQ++ L   ++F 
Sbjct: 134 SPSDPRYREVHYILLDPSCSGSGMPNRQLEEPGAGQPSPARLHALAGFQQRALCHALTFP 193

Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            ++    +V+S CSL ++++E+VV+  L  +P    L P   A W    ++     E  +
Sbjct: 194 SLQ---RLVYSTCSLCQEENEDVVRDALHQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 249

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
           R +P+             GFF   + R+
Sbjct: 250 RASPETTLSG--------GFFVAIIERV 269


>gi|237720133|ref|ZP_04550614.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_2_4]
 gi|229450685|gb|EEO56476.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_2_4]
          Length = 497

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 127/311 (40%), Gaps = 11/311 (3%)

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
           +   +       +P  F +      G E    ++ A      + + +  +     H L+ 
Sbjct: 1   MIFAEINKRKMELPASFIDYTRALLGDEEYDKLAVALQQEPPVSIRL--NQLKINHSLSD 58

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPG 253
            +  +      E   +    P F  G ++VQ+AS+    Q+        + +LDLCAAPG
Sbjct: 59  KVPWSSEGFYLEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPMKMLDLCAAPG 118

Query: 254 GKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDA 309
           GK+         G+ + A +V + R + L  NL +       +   D  D+      FD 
Sbjct: 119 GKSTHARSVLPEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDV 178

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  G  R+ P  +     +++      QR+++      +KPGGI+++S C+ +
Sbjct: 179 ILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFN 238

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
            ++ EE  + + +        V +   +  + D+   LS +G    +   +       + 
Sbjct: 239 TKEDEENARWIQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTK 295

Query: 430 MDGFFAVALRR 440
            +GFF VA R+
Sbjct: 296 GEGFFLVAFRK 306


>gi|198285547|gb|ACH85312.1| NOL1/NOP2/Sun domain family member 5-like [Salmo salar]
          Length = 488

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 158/446 (35%), Gaps = 38/446 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M     ++ +L  V RK+ ++  L+     DS F+ + Q     + A+V  T +F   + 
Sbjct: 1   MALYAKAAEILEKVERKQATVKTLV----YDSKFQNIKQ-----LFALVCETQKFSSILQ 51

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++    + L ++      L +V V  ++            A+    R +     A++ 
Sbjct: 52  EIIES---TKLLKQTKIKINLAKVLVYDLVIGKGLKCGGAWKALMMKHRSRLQAALARMK 108

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                  +++ +    +      +P + +        ++ +           Y+    + 
Sbjct: 109 IKQKVSRNQDLLSSSLQHPEGDQLPRYVRVNTLKTTVEDAIDYFKR--EGFSYLGQAYRL 166

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D      K     L    + +            +  G   +QD ++ +P  L        
Sbjct: 167 DDLNLKGKSFVGDLHLSDLLVFSPKTDFHDHNLYKAGHIILQDKASCLPAYLLNPPTGSH 226

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD CAAPG KT+    ++ +  ++ A D+  +RL  +   L R  +  + +   D    
Sbjct: 227 VLDACAAPGNKTSHLAAIMKNKGRLFAFDLDAKRLSTMSTLLLRAGVTCQQLANQDFLKV 286

Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF---QRKLLLQGISF 354
            P          +L+D  CS +G +    +   ++   D  +       Q   L   + F
Sbjct: 287 DPDGPQYKDVEYILLDPSCSGSGMVCLRDEASPSQKEQDKRRLQALAAFQLHCLNHALRF 346

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
            +    +V+S CS+  +++E+VV   L  +P    LVPL   + +     +       +R
Sbjct: 347 PRLQ-RLVYSTCSIHTEENEQVVAACLLQNPG-FRLVPLLQQWPERGLAPLT----KCLR 400

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
                        +   GFF   L R
Sbjct: 401 --------ASTTKTLTHGFFVALLER 418


>gi|332662929|ref|YP_004445717.1| Fmu (Sun) domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331743|gb|AEE48844.1| Fmu (Sun) domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 445

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 25/302 (8%)

Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
           ++P  F  ++++  G+        A  SP+ + +           + N   +      + 
Sbjct: 1   MLPAAFSAQMQDQLGQAAYADFLQALSSPIPVSVRRNPLKLKHWGE-NYAGVKWHPEGVY 59

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTA---Q 258
                + +L     G  +    ++S+ +               VLDL AAPGGK+     
Sbjct: 60  LPARPVFTLDPRLHGGAYYVQEASSMLLWSVLQQTVDLNSPLKVLDLAAAPGGKSTLLAA 119

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
            +  G+ + + +V K R + LR NL +           D+ ++ P ++ FD VL+DAPCS
Sbjct: 120 ALAEGSLLISNEVIKSRYQILRENLSKWGYPNVVCTNQDSREFAPLQRQFDLVLLDAPCS 179

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P  +     + +   A  QR++L +  + +KPGGI+++  C+ +  ++   V
Sbjct: 180 GEGLFRKDPTAVNEWSPEHVQHCAARQRRILAEASALLKPGGILIYCTCTYNDHENALNV 239

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           Q     S   ++L P+  ++     +    + E   +  P  +E          GFF  A
Sbjct: 240 QW----SQENLDLAPIALSFPTEWGIQ---ARELGYQCYPHHVEGE--------GFFIAA 284

Query: 438 LR 439
           LR
Sbjct: 285 LR 286


>gi|329920262|ref|ZP_08277046.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 1401G]
 gi|328936307|gb|EGG32755.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 1401G]
          Length = 469

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENTKKGFRLNPLKYDYTNVKYNLDHKISYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +++   + ++ +P +            +     I+       +        +G FA  L+
Sbjct: 241 LMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|146303359|ref|YP_001190675.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145701609|gb|ABP94751.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348]
          Length = 354

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 129/301 (42%), Gaps = 31/301 (10%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT-----G 201
           +P+W  +R+    G E    + +      ++ +  +K  ++    +L             
Sbjct: 72  LPKWILDRVRPLLGDE---GLRNLLRRKTWVRINTLKKGLQEILDELKGKGYSFVPDRDF 128

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQ 258
              ++ +   I S+P F +G+   QD ++ + V +       ++L++  APG K     Q
Sbjct: 129 NYLVEWIFPQISSIPEFRQGLLIPQDKASVMVVNVLDPKPEETILEIGGAPGTKTSLIQQ 188

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           L  + + V ++D+S RR+E  R  L +  +   +++  DA +       D VLVDAPCS+
Sbjct: 189 LTHNKSYVISVDISARRVEAQRRLLAKWGVSNVELVIADATEL-KVTHADKVLVDAPCSN 247

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           +GT+   P +       +++K    Q+ +L + +S    G  VV+S CSL  ++ E+ V+
Sbjct: 248 SGTMNVDPSIPLRLTKAELLKLVRIQKMILKRAVSL---GVPVVYSTCSLFPEEGEKQVE 304

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           +      + +   PL+  Y KS            +R  P +            GFF   +
Sbjct: 305 EF-SRYLVKITDDPLHMGYRKSKVWMRV------MRTYPHLDYSE--------GFFISKI 349

Query: 439 R 439
            
Sbjct: 350 E 350


>gi|224044808|ref|XP_002192436.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Taeniopygia
           guttata]
          Length = 469

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 107/273 (39%), Gaps = 47/273 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  + +   +        +LD+CAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPSHLFLQNLPSVVVSHVLNPQPGEKILDMCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V A+D    +++K++ N + L L        D                     + FD 
Sbjct: 260 GEVIAMDKIANKVKKIKQNAEFLQLNCIKAFCYDGTKALLVEKTEDKQEGPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++ ++    ++      QRKL    +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMAYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   L++ P  ++L P              LS +  +++     +       G
Sbjct: 377 LSENEEQVAWALKTFPC-LQLHPQEPHIGGEGMKGAGLSLDQ-LKLL-QRFDPSAVTLRG 433

Query: 430 MD---------------------GFFAVALRRL 441
           MD                     GFF     +L
Sbjct: 434 MDINSLQDSREDDLISLANKDCIGFFIAKFIKL 466


>gi|220905585|ref|YP_002480897.1| Fmu (Sun) domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869884|gb|ACL50219.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 462

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 18/260 (6%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +    ++  A        RL   P  + S      G  ++QD S+ +P          +V
Sbjct: 28  LRAQGYEFEAEPFSPLCRRLVAEPRPLGSSLAAFFGYIYIQDRSSMLPPLALAPAAGSAV 87

Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFD 300
           LD+CA+PG KT  L         V   + S  RL  LR NL +             DA  
Sbjct: 88  LDMCASPGSKTGFLAQLVGRTGFVLGNEPSPSRLATLRANLHQCGFIHTGTCSYSGDALP 147

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
             P    + +L+D PCS  GT+ ++P VL     D +      QR+LL      + PGG 
Sbjct: 148 LRPGSWKN-ILLDPPCSGWGTVEKNPQVLKLWQGDKLDSLTSLQRRLLRHAERLLAPGGH 206

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           VVFS C+ +  ++E+ V +        + LV  +   +           EG +R+     
Sbjct: 207 VVFSTCTTNVAENEDQV-RFAEEH---LGLVREHINPFPGFVWEELPGGEGTLRV----- 257

Query: 421 EKIDGVSSGMDGFFAVALRR 440
              DG  S   GF+   LR+
Sbjct: 258 ---DGARSQAQGFYVALLRK 274


>gi|302412531|ref|XP_003004098.1| Nop16-like protein NOP2 [Verticillium albo-atrum VaMs.102]
 gi|261356674|gb|EEY19102.1| Nop16-like protein NOP2 [Verticillium albo-atrum VaMs.102]
          Length = 713

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 19/165 (11%)

Query: 287 HLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                 +   DA ++  P   FD VL+DAPCS TG I + P V   +   D +     Q+
Sbjct: 356 GARNVVVSNYDAREFPKPMGGFDRVLLDAPCSGTGVIAKDPSVKTNKTERDFMMLPHMQK 415

Query: 346 KLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS- 400
           +LLL  I  V    K GG +V+S CS+  +++E VVQ  L   P  V+LV     + K  
Sbjct: 416 QLLLAAIDSVNHNSKTGGFIVYSTCSVTIEENEAVVQYALSRRPN-VKLVDTGLPFGKEG 474

Query: 401 ----IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +      S +   R  P            +DGFF    +++
Sbjct: 475 FTSYMGKKFDASLKLTRRYYPHTY--------NVDGFFVSKFQKV 511


>gi|294952649|ref|XP_002787395.1| hypothetical protein Pmar_PMAR028656 [Perkinsus marinus ATCC 50983]
 gi|239902367|gb|EER19191.1| hypothetical protein Pmar_PMAR028656 [Perkinsus marinus ATCC 50983]
          Length = 1042

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 38/254 (14%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRC 281
           Q+ ++ +PV + G      VLD+CAAPG KT Q    +      V A ++      +   
Sbjct: 739 QEVASMVPVSVLGIEPAHEVLDMCAAPGSKTLQALDVVEKGRGMVVANELD---TRRAHI 795

Query: 282 NLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
              R+       +I   A        FD V+ D PCS  GT R++P      D     + 
Sbjct: 796 LCGRVGASEGFMVINHKAQLIPNNHQFDRVICDVPCSGDGTFRKYPVKWKHWDPSLGRRL 855

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR------------------ 382
              Q ++ L+  + +K GG + +S CS++  ++E VVQ VL+                  
Sbjct: 856 HHTQIQIALRAFALLKVGGRMSYSTCSVNPLENEAVVQAVLKAVSPHGRLVRVELPGFRT 915

Query: 383 ----SSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITP------DMLEKIDGVSSGM 430
               +    VE V  +   +    ++     + W R  + P          ++    +  
Sbjct: 916 YPGLNHWQVVEEVEDSHEVYHCEAISEGDVRKEWYRPSMWPSGSFDLSPCLRVYPHLNNT 975

Query: 431 DGFFAVALRRLIQP 444
            GFF   + +  +P
Sbjct: 976 GGFFTAVIEKTGEP 989


>gi|238854639|ref|ZP_04644969.1| putative RNA methylase [Lactobacillus jensenii 269-3]
 gi|282932970|ref|ZP_06338367.1| ribosomal RNA small subunit methyltransferase F [Lactobacillus
           jensenii 208-1]
 gi|313472182|ref|ZP_07812674.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii 1153]
 gi|238832429|gb|EEQ24736.1| putative RNA methylase [Lactobacillus jensenii 269-3]
 gi|239529557|gb|EEQ68558.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii 1153]
 gi|281303005|gb|EFA95210.1| ribosomal RNA small subunit methyltransferase F [Lactobacillus
           jensenii 208-1]
          Length = 462

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSK 273
            +  G  + QD SA  P +  G      VLDLCAAPGGK+      + +   + A ++S 
Sbjct: 74  EWVNGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNEGLLVANEISA 133

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT 331
            R + LR N++R       +   D      K    FDA+LVDAPCS  G  R++ D +  
Sbjct: 134 SRAKNLRENIERWGASNCLVTNEDTSQLAKKFPHFFDAILVDAPCSGEGMFRKNHDAVTY 193

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
              + +++ +  Q+++L + +  +K GG +++S C+   ++ E++   ++      +   
Sbjct: 194 WSQEYVLECSSRQKEILNEAVKMLKTGGSLLYSTCTYAPEEDEKICAYLVNKLGFKLVKT 253

Query: 392 PLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +N A          L+  E   R  P                F    
Sbjct: 254 KVNVASAGVPAWGENLAGIEYARRFWPQDEIGEGQ--------FLAKF 293


>gi|328869535|gb|EGG17913.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
          Length = 507

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 116/277 (41%), Gaps = 22/277 (7%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           +++   ++ ++ +    +  T  I        +++   F + +  +        +     
Sbjct: 234 VSLMNRLDYYSTRGGVGIKMTERIWDCPPLNGVLTDKLFLQHLPSILTVFQMDLLPSQRE 293

Query: 240 LNNLSVLDLCAAPGGKTA------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--- 290
             + ++LD+CAAPGGKT       +    G K+TA+D +K++ + +              
Sbjct: 294 KRSFNILDMCAAPGGKTTLIASLVKNNGLGDKITAIDKNKKKAKMVSDLCRVNGFDENGL 353

Query: 291 EDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
             +   D+          ++ FD +L+D PCS  GT  R  +        D+  SAC QR
Sbjct: 354 VTVRAGDSKKLLIEGVFKEESFDRILLDGPCSGLGTRPRFDEATLLI---DLDNSACLQR 410

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            L+   +  + PGGI+V+S C+++  ++EE V+ +L +    ++LVP  + +     +  
Sbjct: 411 VLIDAAVKLLAPGGILVYSTCTINPCENEENVKYLLDNYGSFMQLVP-QTGHIGDPGLPG 469

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            L       ++P +       +    GFF    ++  
Sbjct: 470 ILPEN----LSPLVQRFDPSTNHETIGFFISKFKKTA 502


>gi|330804693|ref|XP_003290326.1| hypothetical protein DICPUDRAFT_6820 [Dictyostelium purpureum]
 gi|325079536|gb|EGC33131.1| hypothetical protein DICPUDRAFT_6820 [Dictyostelium purpureum]
          Length = 443

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 143/422 (33%), Gaps = 43/422 (10%)

Query: 49  VRAIVNVTLRFLPRIDAVLD--FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106
             A+V  TL++   +D V++    L     + K     L+ V + ++L+           
Sbjct: 35  CYALVCETLKYKSVVDQVIEMTPNLDKEYKKNKTMKYSLMIVMIYELLFSAHQSIKGGGH 94

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWF----------KERL 156
           A +   + +   + A     I +R       L   I     +P +            +  
Sbjct: 95  AKKTLLQYQTQINSALARLKIQKRCKENIDLLPDHIRYPITLPRYVRVNTLQGVNAVQEA 154

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIET-----WAHKLNAVMLPTGGIRLKELPES 211
            + +  E    ++        +       +E         K          I +      
Sbjct: 155 IDQFKSEGYEMLAQQPPLTKKLIKKEDGTVEEQSNIILGEKEFYQDPDFKEILVFHHSID 214

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTA 268
           +        G   +QD ++ +P  +         +D C+APG KT+     + +  KV A
Sbjct: 215 LHDHKMLENGHIILQDKASCLPSFILSPPKGSVCIDSCSAPGNKTSLLSAQMGNTGKVYA 274

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRR 324
           ++  ++R   L     R      + I         D    K  + +L D  CS +G +  
Sbjct: 275 IEKDQKRCGTLIKLTKRSLCKNIEAINDSFLNLKHDDPKFKDVEYILCDPSCSGSGILDS 334

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKV-- 380
              +   +    +   A FQ  ++    +F  VK    V++S CS+ + ++E+VV++   
Sbjct: 335 EEKLEEEKR---VKLLADFQLSIIQHAFAFPNVKK---VIYSTCSVHQVENEDVVERAIK 388

Query: 381 -LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            L        +V +   +  S  + +  + E  IR+TP     I        GFF     
Sbjct: 389 ELNKDGEKWRVVNILPHWNHSRGLPIYKNSEYSIRMTPSKDFTI--------GFFVALFE 440

Query: 440 RL 441
           ++
Sbjct: 441 KI 442


>gi|330898596|gb|EGH30015.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 161

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%)

Query: 278 KLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           ++R NLDRL L A        +   +   K F  +L+DAPCS+TG IRRHPD+  TR  D
Sbjct: 3   RVRENLDRLGLDAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQAD 62

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           DI   A  Q +LL      ++ GG++V++ CS    ++ +V++  L  +    EL     
Sbjct: 63  DIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQ 122

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           A      +  A               ++     G DGF+   L ++ 
Sbjct: 123 AGQPPAGIKQA------------HGRQLLAQQGGHDGFYYAKLIKIA 157


>gi|221118960|ref|XP_002159649.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 560

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/318 (23%), Positives = 117/318 (36%), Gaps = 41/318 (12%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTG 201
                E+F E L N +    +L   +AC     I +    +K      A  L    +   
Sbjct: 252 YYSYNEYFMESLINLFPGGEILEFLEACEVKRPITIRSNSLKTRRRDLAQALINRGVNLD 311

Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            I                I + P +  G + +Q AS+ +PV       N  +LD+C+APG
Sbjct: 312 PIGKWSKVGLVVYDSSVPIGATPEYLAGHYMIQGASSMLPVIALSPQENERILDMCSAPG 371

Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309
           GKT  +   + +   + A D    RL+ L  N+ RL +    +   D   +      FD 
Sbjct: 372 GKTTYIGSLMKNTGVIVANDAKAERLKSLIGNIHRLGITNTIVCNYDGRSFPKVMGGFDR 431

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL+DAPCS TG I +   V   +   DI + +  Q++LLL  I  V              
Sbjct: 432 VLLDAPCSGTGVISKDEQVKTNKSEKDIQRCSHVQKELLLAAIDSV-------------- 477

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP-------DMLEK 422
                +   K        V    L+    K +   +    EG+ R          ++  +
Sbjct: 478 -----DAKSKXXXXXXXWVVDYALSRRNVKLVPTGIDFGKEGYTRYRDKRFHHTMNLTRR 532

Query: 423 IDGVSSGMDGFFAVALRR 440
               +  MDGFF   L++
Sbjct: 533 FYPHTHNMDGFFVAKLKK 550


>gi|118085726|ref|XP_425980.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 469

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 47/273 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  + +   +        +LD+CAAPGGKT  L   +   
Sbjct: 200 EPVYLSPSFESVLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTTHLATLMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--------------AFDYCPKKLFDA 309
            +V A+D    +++K++ N + L L        D                     + FD 
Sbjct: 260 GEVIAMDKIANKVKKIKQNAELLQLNCIKAFCYDGTKALSVEKREDKQEEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++ ++    ++      QRKL    +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMAYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGVLVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   L + P  ++L P              L+    +++     +   G   G
Sbjct: 377 LSENEEQVAWALETFPC-LQLQPQEPHIGGEGMRGAGLALHQ-LKLL-QRFDPSAGTLQG 433

Query: 430 MD---------------------GFFAVALRRL 441
            D                     GFF     +L
Sbjct: 434 TDMESLQDCREEDLVSLANKDCIGFFIAKFMKL 466


>gi|256425440|ref|YP_003126093.1| Fmu (Sun) domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040348|gb|ACU63892.1| Fmu (Sun) domain protein [Chitinophaga pinensis DSM 2588]
          Length = 464

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 17/233 (7%)

Query: 216 PGFAEGVWWVQDASASI----PVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTA 268
           P F  G ++VQ+AS+         +      L VLDLCAAPGGK      +I + + + +
Sbjct: 83  PFFHAGAYYVQEASSMFVEQVMRHVCDLDAPLKVLDLCAAPGGKSTLLQSIISADSVLVS 142

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPD 327
            +V K R   L  N+ +       +   D  D+      FD ++VDAPCS +G  RR P+
Sbjct: 143 NEVIKSRAALLGDNISKWGAANVVVTNNDPRDFGRLPGYFDVMVVDAPCSGSGLFRREPE 202

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            +     ++++  +  Q+++L    + +K  GI++++ CS  +Q+ EE+++ +  +  + 
Sbjct: 203 AVEEWSPENVMLCSQRQQRILADVWNTLKENGILIYATCSYSRQEDEEIMEWIQDNFSVE 262

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +P++  +      A     EG+ R  PD ++          GFF    R+
Sbjct: 263 NIAIPVSEDWHIVKTTAGPQQGEGY-RFYPDKVKGE--------GFFITCFRK 306


>gi|260911784|ref|ZP_05918356.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634110|gb|EEX52228.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 467

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 119/305 (39%), Gaps = 21/305 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI----ETWAHKLNAVMLPTG 201
            ++P+ F        G E    +  A      + L +        ET    ++  +  + 
Sbjct: 1   MVLPQEFTTYTRALMGDELYEKLHAALDQEPPVSLRLNPFKTINGETEVCDVDEGVAWSD 60

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--LSVLDLCAAPGGKTAQL 259
                    +    P F  G ++VQ+AS+     +   L +  +++LDLCAAPGGK+  L
Sbjct: 61  NGYYLSGRPNFTFDPLFHAGAYYVQEASSMFVAWIVKQLIHSPITMLDLCAAPGGKSTAL 120

Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAP 315
                 G+ +   +   +R   L  N+ +             A        FDA+L D P
Sbjct: 121 RSILPQGSLLFCNEPITQRASILAENVQKFGHPGMVVTSNFAADYRKSGLQFDAILADVP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+    +      ++      QR+++      +KPGG++++S C+ + +++E 
Sbjct: 181 CSGEGMFRKDAGAIAEWSETNVEHCWRLQREIIADIWPCLKPGGLLIYSTCTFNDKENER 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
            V+ + +      +L P+ SA+  +  +   L      R  P + +          G F 
Sbjct: 241 NVEWIAQELGAIPDLPPIPSAWNITGSICSELPAC---RFIPGVSKGE--------GLFL 289

Query: 436 VALRR 440
             LR+
Sbjct: 290 CVLRK 294


>gi|50291759|ref|XP_448312.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527624|emb|CAG61273.1| unnamed protein product [Candida glabrata]
          Length = 672

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 128/382 (33%), Gaps = 49/382 (12%)

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
              +V    +     K  + F        +   +  + L  R+ G     +      +  
Sbjct: 25  WNELVRENAKWESYYKLLQLFPAEQWDEFKTTCQSPLPLTFRVTGSRKHADEVLSLFKTR 84

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
           +         +         L    +   W   +   ++       K     +V     A
Sbjct: 85  HLPNLTDVEFEGNKIQAPKSLPWYPNEYAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 141

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--------IVSGAKVTALDV 271
            G    Q+A + IP  +     + +VLD+CAAPG KT Q+              V A D 
Sbjct: 142 VGNISRQEAVSMIPPIVLEVEPHHTVLDMCAAPGSKTTQMIEALHKDTDEPTGFVVANDA 201

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319
             RR   L   L RL+     ++  DA  +              +  FD +L D PCS  
Sbjct: 202 DSRRSHMLVHQLKRLNSANLMVVNHDAQFFPRIILSDEPSKKKAQLKFDRILCDVPCSGD 261

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++ +V    +T   +     Q  +L +G+  ++  G +V+S CS++  ++E VV +
Sbjct: 262 GTMRKNVNVWKDWNTQGALGLHTVQLNILDRGLHLLQNNGRLVYSTCSMNPIENEAVVAE 321

Query: 380 VLRSSPIPVELVPLNSAY-----------WKSIDMAMALSP---EGWI------------ 413
            LR     V LV  +              W  ID  M       EG I            
Sbjct: 322 ALRRWGDKVRLVDCSEKLPGLIRSQGITQWPVIDRNMEERKKEDEGMINSWFPPSEEEVS 381

Query: 414 RITPDMLEKIDGVSSGMDGFFA 435
           +   +   ++        GFF 
Sbjct: 382 KFHLERCMRVYPHQQNTGGFFI 403


>gi|325913845|ref|ZP_08176204.1| NOL1/NOP2/sun family protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325539920|gb|EGD11557.1| NOL1/NOP2/sun family protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 199

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 23/203 (11%)

Query: 244 SVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMD 297
            VLD CAAPGGK A         ++TALDV  RRLE+++  L R    A          D
Sbjct: 12  RVLDACAAPGGKAAHLLERYPQVQLTALDVDARRLERVQQTLQRTVPNAQVGLHAADAAD 71

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
              +   + FDAVL+DAPCS+TG +RR PDVL  R  DDI      Q +LL      ++P
Sbjct: 72  LAAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIAALCALQARLLDASWRTLRP 131

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG ++++ CSL  ++++  V+  L+ +P   +  PL +A+                    
Sbjct: 132 GGQLLYTTCSLLARENQAQVEAFLQRTP-DAQAQPLGAAFGHVAGPG------------- 177

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
               +        DGFF   L +
Sbjct: 178 ---RQRFPGEQHCDGFFYALLLK 197


>gi|46581591|ref|YP_012399.1| NOL1/NOP2/sun family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451014|gb|AAS97659.1| NOL1/NOP2/sun family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235234|gb|ADP88088.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris RCH1]
          Length = 431

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 14/259 (5%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +E   ++           RL E P  +        G+ ++QD S+ +P          +V
Sbjct: 26  LEAQGYRFIPEPFSPWSRRLVEEPRPLGGSLAAFFGLIYIQDRSSMLPPVALAPAAGSAV 85

Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDY 301
           LD+CA+PG KT  L         V   + ++ RL  LR NL  L+L +A           
Sbjct: 86  LDMCASPGSKTGFLAQLVGETGFVLGNEPNRSRLATLRQNLFTLNLLHAATCSYPGESLP 145

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P+  +D + +D PCS  GT+ R+P VL     D I      QR LL +    ++PGG V
Sbjct: 146 LPEGTWDCIQLDPPCSGWGTVERNPQVLKLWQGDKIRPLIALQRLLLAEARRLLRPGGRV 205

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C+ +  ++E  V+  +    +  E VPL                EG +R+ P    
Sbjct: 206 VYSTCTTNVDENEAQVRYAIDE--LGFEPVPLEPPPGFVFAAPELPGCEGVLRVDPQGSA 263

Query: 422 KIDGVSSGMDGFFAVALRR 440
                     GFF  A RR
Sbjct: 264 AQ--------GFFVAAFRR 274


>gi|270295988|ref|ZP_06202188.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273392|gb|EFA19254.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 485

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 115/307 (37%), Gaps = 21/307 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F +      G E    ++ A      + + +  D    +               
Sbjct: 1   MKLPSSFTDYTRALLGVEEYEKLAAALEGEQPVSIRLNEDKLPESSFSLFRSSFRHVPWS 60

Query: 206 KELPESIVSL-----PGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTA 257
                    L     P F  G ++VQ+AS+    Q          + +LDLCAAPGGK+ 
Sbjct: 61  TAGYYLDKRLTFTFDPLFHAGCYYVQEASSMFVEQALRRYVGEGPVVMLDLCAAPGGKST 120

Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKKLFDAVLVD 313
                  +G+ + A +V + R + L  NL +       +     A        FD +L D
Sbjct: 121 HARSVLPAGSLLVANEVIRNRSQVLAENLTKWGHSGVVVTNNAPADFSSLTDFFDVILTD 180

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  G  R+ P  +     +++      QR+++      +K GGI+++S C+ + +++
Sbjct: 181 VPCSGEGMFRKDPVAVSEWSGENVEICWQRQRRIVTDIWPCLKSGGILIYSTCTYNTKEN 240

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           EE ++ +       V  + +++ +  + ++          R  P   +          GF
Sbjct: 241 EENIRWIRDEFGAEVLPLEISTDWNITGNLLSGED-FPAYRFLPHRTKGE--------GF 291

Query: 434 FAVALRR 440
           F   LR+
Sbjct: 292 FLAVLRK 298


>gi|321263532|ref|XP_003196484.1| tRNA (cytosine-5-)-methyltransferase [Cryptococcus gattii WM276]
 gi|317462960|gb|ADV24697.1| tRNA (cytosine-5-)-methyltransferase, putative [Cryptococcus gattii
           WM276]
          Length = 757

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 91/256 (35%), Gaps = 40/256 (15%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            ++      +     F                  Q+A + IP        +   LD+CAA
Sbjct: 120 WQVNAPKRVVRKTEPFKNFQRFLVGETEVGNLSRQEAVSMIPPLFLDVQPHHYCLDMCAA 179

Query: 252 PGGKTA--------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC- 302
           PG KTA            S   + A D   +R   L     R+      +   DA  +  
Sbjct: 180 PGSKTAQIIEALNPHHTTSTGLLIANDSDYKRTHMLVHQTGRMPSKGLIVTNFDASMFPA 239

Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                     FD +L D PCS  GT+R++ ++       D       Q ++L + ++ +K
Sbjct: 240 IKLADGKNLQFDRILADVPCSGDGTLRKNIEIWAKWGVTDGNSLHSLQLRILERAMNMLK 299

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           PGG +V+S CSL+  + E V+   L        LV ++S   +             ++  
Sbjct: 300 PGGRLVYSTCSLNPSEDESVIAAALLKH-TQFSLVDVSSELPE-------------LKRR 345

Query: 417 PDMLEKIDGVSSGMDG 432
           P M +       G DG
Sbjct: 346 PGMAKWKVATQEGKDG 361


>gi|218262210|ref|ZP_03476758.1| hypothetical protein PRABACTJOHN_02432 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223541|gb|EEC96191.1| hypothetical protein PRABACTJOHN_02432 [Parabacteroides johnsonii
           DSM 18315]
          Length = 467

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 17/248 (6%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKT 256
                       S    P F  G ++VQ+AS+    Q         +  LDLCAAPGGK+
Sbjct: 56  WCDTGYYLPERLSFTFDPLFHAGAYYVQEASSMFLEQAVRSHVKTPVRCLDLCAAPGGKS 115

Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLV 312
                 +  G+ + + +V + R   L  N+ +       +   D  +  C    FD ++ 
Sbjct: 116 THLAACLPEGSLLVSNEVIRSRSHILAENIAKWGNPNCIVTNNDPKEVGCLTHFFDVIIA 175

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  G  R+  D        ++   A   R+++    + +KPGG++++S C+ + ++
Sbjct: 176 DVPCSGEGMFRKDTDSTGEWSIANVELCAGRGRRIIHDVWNALKPGGLLIYSTCTYNTEE 235

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
            EE +  +          +P+   +  +  +                + +     +  +G
Sbjct: 236 DEENIHYITEELGAEALPIPIKDEWQITGPLKYN-----------HPVYRFFPHKTKGEG 284

Query: 433 FFAVALRR 440
           FF  ALR+
Sbjct: 285 FFLAALRK 292


>gi|71022085|ref|XP_761273.1| hypothetical protein UM05126.1 [Ustilago maydis 521]
 gi|46097767|gb|EAK83000.1| hypothetical protein UM05126.1 [Ustilago maydis 521]
          Length = 1156

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 102/285 (35%), Gaps = 59/285 (20%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
             L      I   P F                  Q+A + +P        +  VLD+CAA
Sbjct: 135 WHLNTKKNVIRKSPEFKRFHQFLVHETDVGSISRQEAVSMLPPLFLDVQPHHLVLDMCAA 194

Query: 252 PGGKTA----------------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
           PG KTA                   +    V A D   +R   L     RL      +  
Sbjct: 195 PGSKTAQLIESLHSPFTSGPSAYNPMPTGLVIANDSDTKRAHMLVHQSQRLPSPNLLVTN 254

Query: 296 MDAFDYCP-----------------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +DA +Y                      +D +L D PCS  GTIR++  +      ++ V
Sbjct: 255 LDASNYQSIQVPWKAADEGAEVIQTAMKYDRILADVPCSGDGTIRKNVPIWKEWTPNNAV 314

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
                Q K+L++G++ ++ GG +V+S CS++  ++E VV + LR     V +V  +S   
Sbjct: 315 GLHALQLKILMRGLNQLREGGRLVYSTCSMNPIENEAVVAEALRRFEGKVRIVDCSSKLP 374

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDG-----------VSSGMDG 432
           + +      +     R  P     + G            ++G DG
Sbjct: 375 ELVRRNGLTT----WRAAPGRGAHLFGKSKYAKQKAAKATAGTDG 415



 Score = 43.3 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 8/61 (13%)

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           + +  +L               AL  +  +R+ P + +          GFF   L ++  
Sbjct: 496 NELDADLASRTPKSLWPQGDEEALGMQHCMRLYPHLQD--------TGGFFVALLEKVGN 547

Query: 444 P 444
           P
Sbjct: 548 P 548


>gi|213025104|ref|ZP_03339551.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 153

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 68/135 (50%), Gaps = 6/135 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1   MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +++ +++ ++   +  K+ ++  L+ V   Q+LY  V  +A +   VE A   K  +  
Sbjct: 56  SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114

Query: 121 AKLVNSILRRVSREK 135
             L+N +LR+  R++
Sbjct: 115 KGLINGVLRQFQRQQ 129


>gi|160882713|ref|ZP_02063716.1| hypothetical protein BACOVA_00671 [Bacteroides ovatus ATCC 8483]
 gi|156111883|gb|EDO13628.1| hypothetical protein BACOVA_00671 [Bacteroides ovatus ATCC 8483]
          Length = 504

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 11/302 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
              +P  F +      G E    ++ A      + + +  +     H L+  +  +    
Sbjct: 17  KMELPASFIDYTRALLGDEEYDKLAVALQQEPPVSIRL--NQLKINHSLSDKVPWSSEGF 74

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI-- 260
             E   +    P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+      
Sbjct: 75  YLEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPVKMLDLCAAPGGKSTHARSV 134

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSS 318
              G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS 
Sbjct: 135 LPEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDVILTDVPCSG 194

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE  +
Sbjct: 195 EGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFNTKEDEENAR 254

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + +        V +   +  + D+   LS +G    +   +       +  +GFF VA 
Sbjct: 255 WIQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTKGEGFFLVAF 311

Query: 439 RR 440
           R+
Sbjct: 312 RK 313


>gi|329576774|gb|EGG58267.1| putative ribosomal RNA small subunit methyltransferase B
           [Enterococcus faecalis TX1467]
          Length = 340

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 135/338 (39%), Gaps = 30/338 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K   + R V+   +  V +       LL+     S    LS++D  L   +V  T+    
Sbjct: 8   KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            ++  L   +     +    ++ LL +S+ Q+LYLD V D+AV++ AVE  KR + N   
Sbjct: 65  LLEYYLTPFVKKP-QKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122

Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
            K VN +LR   R          + + R+A    +P W  E+L    G+E    +  +  
Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDSVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182

Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225
              +      T     E    +L    +     +L           +     F  G   +
Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280
           QD S+ +         +  VLD CAAPGGKT  +        G +VT+LD+   +++ + 
Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302

Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDA 314
            N  RLH+        +      +  P + FD +LVDA
Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDA 340


>gi|326921692|ref|XP_003207090.1| PREDICTED: putative methyltransferase NSUN6-like [Meleagris
           gallopavo]
          Length = 469

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 47/273 (17%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  + +   +        +LD+CAAPGGKT  L   +   
Sbjct: 200 EPVYLSPSFDSVLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTTHLATLMRDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V A+D    +++K++ N + L L        D                     + FD 
Sbjct: 260 GEVIAMDKIANKVKKIKQNAELLQLNCIKAFCYDGTKALSVEKREDKQEGPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++ ++    ++      QRKL    +  +KPGGI+V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMAYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGILVYSTCTIT 376

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++EE V   L + P  ++L P              L+    +++     +   G   G
Sbjct: 377 LSENEEQVAWALETFPC-LQLQPQEPHIGGEGMRGAGLALHQ-LKLL-QRFDPSAGTLQG 433

Query: 430 MD---------------------GFFAVALRRL 441
            D                     GFF     +L
Sbjct: 434 TDMESLQDCREEDLVSLANKDCIGFFIAKFMKL 466


>gi|159490892|ref|XP_001703407.1| tRNA-(m5C) methyltransferase [Chlamydomonas reinhardtii]
 gi|158280331|gb|EDP06089.1| tRNA-(m5C) methyltransferase [Chlamydomonas reinhardtii]
          Length = 392

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 90/282 (31%), Gaps = 67/282 (23%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVT 267
             G    Q+A + +P        +  VLD+CAAPG KT Q                  V 
Sbjct: 114 DAGSISRQEAVSMVPPLFLDVQPHHRVLDMCAAPGSKTFQLLEALHAGSRPGQTPPGFVM 173

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----------------KKLFDAVL 311
           A D    R   L     R+      ++  DA                     +  FD +L
Sbjct: 174 ANDADFMRCNLLTHQTKRVCSPCLLVVNHDASRLPASLLPPPLPEGGKPPRLEVRFDRIL 233

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R+ PD+    +          Q ++ L G   ++ GG +V+S C+ +  
Sbjct: 234 ADVPCSGDGTMRKSPDIWRRWNLSGGNSLHPIQLRIALHGAKMLEVGGRMVYSTCTFNPV 293

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWK-------------------------------- 399
           + E VV ++L      VELV +                                      
Sbjct: 294 EDEAVVAELLVRCKGAVELVDVADCLPDLRRMPGKHAWKVKDRYRCARVRARVCMRESMF 353

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           S      L  E  +R  P              GFF   LR++
Sbjct: 354 STPEKAQLPLERCMRFLPHH--------GDTGGFFVAVLRKV 387


>gi|124027346|ref|YP_001012666.1| methyltransferase B - rRNA small subunit [Hyperthermus butylicus
           DSM 5456]
 gi|123978040|gb|ABM80321.1| Methyltransferase B - rRNA small subunit [Hyperthermus butylicus
           DSM 5456]
          Length = 445

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 95/429 (22%), Positives = 167/429 (38%), Gaps = 42/429 (9%)

Query: 36  SAFRLLSQR-DQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL 94
           + + +L  + D++   AI     R L  +D ++   +   +      +Q  LR++V  + 
Sbjct: 35  ARYHILGTKYDRVF-TAITYRMFRLLGIVDKIIAERIGR-IDYPTPVMQA-LRLAVM-VS 90

Query: 95  YLDVADYAVVDL--AVEQAKRDKENRHFAKLVN----SILRRVSREKIELLQRIAGISII 148
             D     V         A+  +        +       L +        L+ +    ++
Sbjct: 91  QFDTVGDRVFSESLIENLARIIESEYPGMGELVVRLYKSLEKEPWSPSTKLEELEYRLLL 150

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYI----DLTVKFDIETWAHKLNAVMLPTG--- 201
           P    E L+       V   + A  +           +K  +E    +L    +      
Sbjct: 151 PRILVEELQKLLPPGEVEEFAKAVNTDRPTLGFRVNRLKASVEEIIEELQYAGVDAWPST 210

Query: 202 ---GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                   +   +        EG    QD +++    L G      ++D+CAAPGGKT  
Sbjct: 211 RIPYHVSYKGSLNYSRFKPLLEGKVVPQDEASAAAGYLLGAKPGELIVDMCAAPGGKTTH 270

Query: 259 LIV---SGAKVTALDVSKRRLEKLRCNLDRLH-LYAEDIIEMDAFDYCP--KKLFDAVLV 312
           L      GA++ A+DV   RLE+L     R     +   +  DA       +   D VL+
Sbjct: 271 LAELSALGARIVAIDVFIDRLERLIELATRTGTWPSIYPVRSDAIFASRYVRDRVDRVLL 330

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PC+STG + +HP+  W    + IV+    QR+LLL+ +  +KPGG+++++ CS+  ++
Sbjct: 331 DPPCTSTGALAKHPEARWRLTREAIVRHVGLQRRLLLEAVKLLKPGGLLLYTVCSVLPEE 390

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
            EE ++ +L +    +E+VPL   Y  S  +       G +R  P           G  G
Sbjct: 391 GEENIKWLLETVKG-IEIVPLTGPYDPSPLLP------GTMRAWPH--------RHGTTG 435

Query: 433 FFAVALRRL 441
           FF   L R 
Sbjct: 436 FFYALLERK 444


>gi|293373106|ref|ZP_06619471.1| NOL1/NOP2/sun family protein [Bacteroides ovatus SD CMC 3f]
 gi|292631925|gb|EFF50538.1| NOL1/NOP2/sun family protein [Bacteroides ovatus SD CMC 3f]
          Length = 487

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 11/301 (3%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F +      G E    ++ A      + + +  +     H L+  +  +     
Sbjct: 1   MELPASFIDYTRALLGDEEYDKLAVALQQEPPVSIRL--NQLKINHSLSDKVPWSSEGFY 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI--- 260
            E   +    P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+       
Sbjct: 59  LEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPVKMLDLCAAPGGKSTHARSVL 118

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSST 319
             G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS  
Sbjct: 119 PEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDVILTDVPCSGE 178

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE  + 
Sbjct: 179 GMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFNTKEDEENARW 238

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           + +        V +   +  + D+   LS +G    +   +       +  +GFF VA R
Sbjct: 239 IQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTKGEGFFLVAFR 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|153877898|ref|ZP_02004409.1| Ribosomal RNA small subunit methyltransferase B [Beggiatoa sp. PS]
 gi|152065638|gb|EDN65591.1| Ribosomal RNA small subunit methyltransferase B [Beggiatoa sp. PS]
          Length = 207

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 21/198 (10%)

Query: 240 LNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM- 296
              + VLD CAAPGGK A          + ALD    R+  L   L RL+L A+      
Sbjct: 2   QEGMRVLDACAAPGGKMAHLLECCKIDTLVALDNQSARVSMLTNTLQRLNLSAKVCCANA 61

Query: 297 -DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                +     FD +L+D PCS +G IRRHPD+ + R   DI K A  Q +LL      +
Sbjct: 62  TKPKTWWDGHPFDRILLDVPCSGSGVIRRHPDIKYLRQPSDIAKLAEGQARLLSTLWPLL 121

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
            PGG +++  CS+  +++   +Q+ L +     E V         +      + +   +I
Sbjct: 122 APGGKLLYITCSVFAEENNLQIQQFLATYVDADEFV---------LTADWGHAQKYGRQI 172

Query: 416 TPDMLEKIDGVSSGMDGF 433
            P          + +DGF
Sbjct: 173 LPG--------ENNLDGF 182


>gi|123413900|ref|XP_001304371.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3]
 gi|121885818|gb|EAX91441.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3]
          Length = 616

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 99/266 (37%), Gaps = 53/266 (19%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277
           G    Q+  + IP        ++ VLD CAAPG KT QLI        V A D   +RL 
Sbjct: 124 GHCHRQEFVSMIPPFFLDVHGSMGVLDTCAAPGSKTTQLIEMLDGDGYVVANDADVKRLH 183

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            +   L R+  Y   +I  DA      ++ FD VL D PC+  GTIR++     T   + 
Sbjct: 184 PMVHQLQRVGTYRTLVINFDAQKLPDFEEKFDRVLCDVPCTGDGTIRKNIKCAETFKLNG 243

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  QRK+L +G+   K GG+ V+S CS++  + E VV  VL  +   VE+V ++  
Sbjct: 244 GTSLHSTQRKILKRGLELTKVGGLCVYSTCSMNPIEDEAVVNSVLLETGDAVEIVDVSDK 303

Query: 397 YWKSI-----------------------------------------DMAMALSPEGWIRI 415
           +   I                                                 E  +  
Sbjct: 304 FPNLIRHKGLTNWPVFDAQMENEFHEYKEPSEVPHERIQYAHPTHFPQPQVPGLEHCMHF 363

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P   +          GFF   LR++
Sbjct: 364 FPHDQDSG--------GFFVTVLRKV 381


>gi|71748890|ref|XP_827784.1| methyltransferase [Trypanosoma brucei TREU927]
 gi|70833168|gb|EAN78672.1| methyltransferase, putative [Trypanosoma brucei]
          Length = 806

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 139/388 (35%), Gaps = 48/388 (12%)

Query: 97  DVADYAVVDLAVEQAKRDKENRHFA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
            V     +D      K  K +R  +  +  N         +            +     E
Sbjct: 126 GVGSKIPMDENAPLLKYYKGDRFASLFECTNGADVGKEWCEFLTCATSPLPMTLRVHRNE 185

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214
           R+      E    + +       +   V     + A    +         ++ +  ++ +
Sbjct: 186 RVMVSIANE---FLKNDPTVSSVLRPVVPLMPTSVALFGCSHAAYHADSYVEHICRTLHA 242

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------- 265
                      Q+  +++PV + G   + +VLD+CAAPG KT Q +    K         
Sbjct: 243 -----ASAVSFQEVVSALPVIVAGIQPHHTVLDMCAAPGSKTLQALDEMLKNGWNSSAVS 297

Query: 266 ---VTALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------------PKKLFD 308
              + A +  + +  + L   L R H         DA  +               ++ FD
Sbjct: 298 SGVMVANEKDRVKATQTLPARLKRYHAPNVICTRCDAVQWPRLLCPTTQGDMHLGERRFD 357

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            V+ D PCS  GT+R+ P +  +     +      QR LL +G+  ++  GI+V+S CSL
Sbjct: 358 RVICDVPCSGDGTLRKEPSLASSWSAGYVKSLLPTQRALLRRGLDLLETDGILVYSTCSL 417

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGW-IR--ITPDMLE 421
             ++ EEVV   L      VEL+ ++S   +           LSP+   +R  + P+  +
Sbjct: 418 QPKEDEEVVCAGLELFGDAVELLDVSSILRECGVQLHSFGGLLSPDTTHLRNSVLPNSYD 477

Query: 422 -----KIDGVSSGMDGFFAVALRRLIQP 444
                ++        GFF  A R+L  P
Sbjct: 478 GRKVLRVLPHKDDTGGFFIAAFRKLSGP 505


>gi|260174015|ref|ZP_05760427.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D2]
 gi|315922284|ref|ZP_07918524.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D2]
 gi|313696159|gb|EFS32994.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D2]
          Length = 487

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 11/301 (3%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +P  F +      G E    ++ A      + + +  +     H L+  +  +     
Sbjct: 1   MELPASFIDYTRALLGDEEYDKLAVALQQEPPVSIRL--NQLKINHSLSDKVPWSSEGFY 58

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI--- 260
            E   +    P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+       
Sbjct: 59  LEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPVKMLDLCAAPGGKSTHARSVL 118

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSST 319
             G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS  
Sbjct: 119 PEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDVILTDVPCSGE 178

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE  + 
Sbjct: 179 GMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFNTKEDEENARW 238

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           + +        V +   +  + D+   LS +G    +   +       +  +GFF VA R
Sbjct: 239 IQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTKGEGFFLVAFR 295

Query: 440 R 440
           +
Sbjct: 296 K 296


>gi|224372090|ref|YP_002606462.1| NOL1/NOP2/sun family protein [Nautilia profundicola AmH]
 gi|223588744|gb|ACM92480.1| NOL1/NOP2/sun family protein [Nautilia profundicola AmH]
          Length = 302

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 18/240 (7%)

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA 268
            + I     +     ++Q+ S+ I         N  VLDL AAPGGK+        KV+A
Sbjct: 72  RKKITKSKTYTANKIYIQNLSSIISALSLDIDENDWVLDLAAAPGGKSLIFSEKAKKVSA 131

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
           ++  K R  +++ N              D         ++FD V +DAPCSS   I    
Sbjct: 132 VEPDKNRFFRMKRNFKEHGAKNIQTYNKDGRFVYKATGEMFDKVFLDAPCSSEAHIDFDE 191

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            + W  +   + + +  Q++L++     +KPGG ++F+ C+   +++EE V  +L     
Sbjct: 192 GITW-WNLKRVRRFSKLQKELIISAFEALKPGGEMIFATCTFAPEENEESVDFLLNKYEN 250

Query: 387 P------VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  + +  +     +  D          +RI P              GF+   +++
Sbjct: 251 AEVVDVNLPIDNIQKGIMEWEDKKYHPDVSKTVRILP---------KGAYSGFYFAKIKK 301


>gi|288802400|ref|ZP_06407839.1| NOL1/NOP2/sun family protein [Prevotella melaninogenica D18]
 gi|288334928|gb|EFC73364.1| NOL1/NOP2/sun family protein [Prevotella melaninogenica D18]
          Length = 467

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 105/254 (41%), Gaps = 10/254 (3%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGK 255
                    +   +    P    GV++VQ+AS+     +        +  LDLCAAPGGK
Sbjct: 91  PWCKEGYWLDTRPNFTFDPLLHAGVYYVQEASSMFLSHVLQHFVKQPVMALDLCAAPGGK 150

Query: 256 TAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311
           T        +G+ + + +  ++R + L  N+ +       +      DY   K  FD ++
Sbjct: 151 TTCARASLPAGSFLFSNEPIRKRAQILAENVQKFGHEGVAVTNNYPRDYKKTKLGFDVII 210

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  G  R+ P  +      ++      QR ++      +KPGGI+++S C+ +  
Sbjct: 211 ADVPCSGEGMFRKDPQSIEEWSLQNVENCWQLQRSIIADIWDNLKPGGILIYSTCTFNAH 270

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           + EE +  +L      +  VP+  A+  +  +      +G  R  P  + +     +  +
Sbjct: 271 EDEENIAWILNEYDAELLSVPIEEAWNITGSLIDNPLKDG--RDFP--VYRFIPGKTRGE 326

Query: 432 GFFAVALRRLIQPK 445
           G F   +R+  + K
Sbjct: 327 GIFMAIIRKRGENK 340


>gi|195048570|ref|XP_001992553.1| GH24818 [Drosophila grimshawi]
 gi|193893394|gb|EDV92260.1| GH24818 [Drosophila grimshawi]
          Length = 729

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 98/281 (34%), Gaps = 71/281 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDV 271
              Q+A + IP  +        VLD+CAAPG KT            Q  +    V A DV
Sbjct: 159 ISRQEAVSMIPPLVLNVQPTDKVLDMCAAPGSKTAQLIEALHASPDQHKIPPGFVLANDV 218

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGT 321
              R   L     RL+     +   D+  +               FD +L D PCS  GT
Sbjct: 219 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVQTVDGSKSILKFDKILCDVPCSGDGT 278

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           +R++PD+    +          Q +++ +G   +  GG +V+S CSL+  ++E V+Q+++
Sbjct: 279 LRKNPDIWLKWNLGQAYNLHGVQYRIVRRGAEMLAVGGRLVYSTCSLNPIENEAVLQRII 338

Query: 382 RSSPIPVELVPL------------------------------------------NSAYWK 399
           + +   ++LV                                             S +  
Sbjct: 339 KDADGALQLVDASHLVPGLKYKPGMTDWKLATKEVDSVYTSFEEVPENLHTIIRPSMFPL 398

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                  +  +  +R+ P + +          GFF   L +
Sbjct: 399 PPAEISGIGLDKCMRVLPHLQDSG--------GFFVAVLEK 431


>gi|301122641|ref|XP_002909047.1| tRNA (cytosine-5-)-methyltransferase NSUN2, putative [Phytophthora
           infestans T30-4]
 gi|262099809|gb|EEY57861.1| tRNA (cytosine-5-)-methyltransferase NSUN2, putative [Phytophthora
           infestans T30-4]
          Length = 637

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 58/278 (20%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ------------LIVSGAKVTALD 270
              Q+A + IP  + G  ++  VLD+CAAPG KT+Q                   V A D
Sbjct: 155 ITRQEAVSMIPPLVLGVESHHKVLDMCAAPGSKTSQLLESLHSQEFATGKTPTGVVVAND 214

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------KKLFDAVLVDAPCSSTGTI 322
           V  +R   L     R+   A  +   +A +           + +FD +L DAPCS  GT+
Sbjct: 215 VDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGKDGTESEGVFDRILCDAPCSGDGTL 274

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R++P +       + +     Q ++  +G + +K GG + +S C+ +  ++E VV  +LR
Sbjct: 275 RKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKVGGNMCYSTCTFNPLENEAVVADLLR 334

Query: 383 SSPIPVELVPLNSAYWKSIDMA-------------------------------------- 404
            S   +ELV +++                                               
Sbjct: 335 WSKGSLELVDVSNTLPLLKRRPGISTWKVMDSQLKEYSSYENYVEENMKDKIKDKIRATM 394

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            + + +    +  +   +         GFF   L+++ 
Sbjct: 395 FSPTKKEAADLHLERCMRCLPQDENTGGFFICLLKKVA 432


>gi|4185892|emb|CAA21831.1| EG:EG0007.9 [Drosophila melanogaster]
          Length = 751

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + IP  +        VLD+CAAPG KTAQ             +    V A DV
Sbjct: 158 ISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320
              R   L     RL+     +   D+  +                FD +L D PCS  G
Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILKFDKILCDVPCSGDG 277

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T+R++PD+    +          Q +++ +G   ++ GG +V+S CSL+  ++E V+Q++
Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337

Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398
           ++ +   +ELV                                               + 
Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFP 397

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              D    +  E  +R+ P + +          GFF   L +  Q
Sbjct: 398 LPADEMAKIGLEKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434


>gi|330861821|emb|CBX71993.1| hypothetical protein YEW_HY35310 [Yersinia enterocolitica W22703]
          Length = 131

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           +C  + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q +++      +K GG+
Sbjct: 12  WCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGV 71

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CS+  +++++ +   L+      +LV   +                         
Sbjct: 72  MVYATCSILPEENQQQIATFLQRH-SEADLVETGTVSAPG-------------------- 110

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           ++        DGF+   L +
Sbjct: 111 KQNLPHPEDGDGFYYAKLIK 130


>gi|332796948|ref|YP_004458448.1| Fmu (Sun) domain-containing protein [Acidianus hospitalis W1]
 gi|332694683|gb|AEE94150.1| Fmu (Sun) domain protein [Acidianus hospitalis W1]
          Length = 348

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 41/254 (16%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +L                  +       EG  +VQ  ++    ++        ++D+ AA
Sbjct: 132 RLPGGKFMVKVYSSLYSSPKLADTKEIKEGKIYVQGKASMYVARIIDPQPGEFIVDMTAA 191

Query: 252 PGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLF 307
           PGGK + +      A++   D + +++EK++    ++++    +   D+        K  
Sbjct: 192 PGGKLSHIYQLEPRARIIGFDHTYKKVEKMKQLFKKMNV-NVQVFVHDSRYLSELGIKDV 250

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VL+D PCS+ G     P V   +   D++    +Q++ L      +K GG V++S C+
Sbjct: 251 DKVLIDPPCSALGL---RPKVYDKKTKTDLMNLHAYQKQFLNSAYEILKKGGEVIYSTCT 307

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           + + ++EEVV                                E  IR  P +        
Sbjct: 308 VTEIENEEVVND-------------------------PRFDIEYMIRFHPQI-------- 334

Query: 428 SGMDGFFAVALRRL 441
             M GFF   L++ 
Sbjct: 335 HDMTGFFIAKLKKK 348


>gi|154494433|ref|ZP_02033753.1| hypothetical protein PARMER_03788 [Parabacteroides merdae ATCC
           43184]
 gi|154085877|gb|EDN84922.1| hypothetical protein PARMER_03788 [Parabacteroides merdae ATCC
           43184]
          Length = 465

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 16/248 (6%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKT 256
                       S    P F  G ++VQ+AS+    Q         +  LDLCAAPGGK+
Sbjct: 56  WCDTGYYLPERLSFTFDPLFHAGAYYVQEASSMFLEQVIRSHVKTPVRCLDLCAAPGGKS 115

Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLV 312
                 +  G+ + + +V + R   L  N+ +       +   D  +       FD ++ 
Sbjct: 116 THLAACLPEGSLLVSNEVIRSRSHILAENIAKWGNPNCVVTNNDPKEIGRLTHFFDVIVA 175

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  G  R+  D        ++   A   R+++    + +KPGG++++S C+ + ++
Sbjct: 176 DVPCSGEGMFRKDTDSTGEWSIANVALCAGRGRRIIHDIWNALKPGGLLIYSTCTYNTEE 235

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
            EE V  +          +P     W+         P    R  P   +          G
Sbjct: 236 DEENVHHITEELGAEALPIPAVKDEWQITGPLKYNHP--VYRFFPHKTKGE--------G 285

Query: 433 FFAVALRR 440
           FF  ALR+
Sbjct: 286 FFLAALRK 293


>gi|212533619|ref|XP_002146966.1| methyltransferase (Ncl1), putative [Penicillium marneffei ATCC
           18224]
 gi|210072330|gb|EEA26419.1| methyltransferase (Ncl1), putative [Penicillium marneffei ATCC
           18224]
          Length = 892

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 72/243 (29%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------------KKLFDAVLV 312
            A D   +R   L   + RL+     +   DA  Y                   FD +L 
Sbjct: 222 IANDSDYKRAHMLIHQMKRLNSPNLIVTNHDATFYPSLKLPSSTGGKQPNVYLKFDRILA 281

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  GT R++P++         +     Q ++L++ +  +K GG VV+S CS++  +
Sbjct: 282 DVPCSGDGTTRKNPNIWADWSPSSALGLHATQMRILVRALQMLKVGGRVVYSTCSMNPIE 341

Query: 373 SEEVVQKVLRSS--PIPVELVPLNSAYWKS------------------------------ 400
           +E V+   +     P  VEL+  +    +                               
Sbjct: 342 NEAVIAAAIERCGGPDHVELIDCSKELPELKRVDGLHTWKVLDRDGRTWNSWEEVEEHRK 401

Query: 401 --------------IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL----I 442
                               +  E  +R+ P + +          GFF   L +      
Sbjct: 402 NEGITGLGRLAATMFPPKEDIHLERCMRVYPHLQD--------TGGFFITVLEKKKEIRA 453

Query: 443 QPK 445
           +P+
Sbjct: 454 KPE 456


>gi|327402513|ref|YP_004343351.1| Fmu (Sun) domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327318021|gb|AEA42513.1| Fmu (Sun) domain protein [Fluviicola taffensis DSM 16823]
          Length = 445

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 124/308 (40%), Gaps = 25/308 (8%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
            + +PE F +R+ N         + DA  +   I + +              +  +    
Sbjct: 3   ETNLPEAFVKRVSNDPFLGTA--LLDALNAEQPISIRMNSLKGEPVLTNLEAIPWSKNGF 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGK---TAQ 258
                 S    P F  G ++ Q+A +     +   +    +  +LDLCAAPGGK    A 
Sbjct: 61  YLAERPSFTLDPHFHGGRYYPQEAGSQFIDSILRNIELPLHPIILDLCAAPGGKSTLIAD 120

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317
            +     + A +V + R + L+ NL +       +   D  D+   K LFD +L+DAPCS
Sbjct: 121 YLNGRGLLIANEVIQARSKILKENLTKWGTKNTLVSNNDPSDFEALKNLFDCILIDAPCS 180

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+          + +   A  Q+++++     +KPGG +++S C+ ++Q++EE  
Sbjct: 181 GEGMFRKDLGARNEWSEESVNMCAARQKRIVMDVWDSLKPGGFLIYSTCTFNEQENEENA 240

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             +L+     +  + + SA      +             P  L+         +GFF V 
Sbjct: 241 SWILQQVDAQIVSLQIPSAKKGRNGIGHYA--------LPSELK--------TEGFFFVV 284

Query: 438 LRRLIQPK 445
           +++  + +
Sbjct: 285 IQKNGEER 292


>gi|297526997|ref|YP_003669021.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255913|gb|ADI32122.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 344

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 138/344 (40%), Gaps = 32/344 (9%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
             +++ILR +  E   + +++A       +  ER     G    + + +    PL   + 
Sbjct: 8   PSIDNILRDIYIEPSIVSRKLASKYRYLPYMIERYIKILGINETIDLLNTFEKPLKPVVR 67

Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWVQ-DA 228
                 D +T   +LN +      I        + S P          + +G ++V  D+
Sbjct: 68  TNTLLIDEDTLYERLNQLGFKLERINWSRESFRVASAPKSPSIGATHEYLKGYYYVHRDS 127

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285
           ++ +PV+L        VLD CAAPGGK   +     +  +V A D+   RL+ L  ++ R
Sbjct: 128 ASLVPVKLLMHEFEGDVLDACAAPGGKATYIAQILNNKYEVLANDLVLYRLKALIGHVAR 187

Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
           + +    +   DA        K +  VL+D PCS  GTI             D+ + A  
Sbjct: 188 MRIKDIVVTWSDARKLPILIDKRYGRVLLDVPCSGEGTIMFDQGRKTRTSLKDLARIARR 247

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           + ++LL GI  ++  GI+ +  CS+  +++E VV KVL        + P    +  S  +
Sbjct: 248 ETEILLSGIDMLEENGILAYVTCSIAPEENEYVVAKVLEMRDDVEIVKPPLKLFDWSPWL 307

Query: 404 AMALSPE------GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              L  +        IRI P +         GM G     LRR+
Sbjct: 308 KSYLGMDFPDEFRYCIRIWPHI--------HGMIGLTTCLLRRI 343


>gi|241152010|ref|XP_002406816.1| tRNA (cytosine-5-)-methyltransferase NSUN2, putative [Ixodes
           scapularis]
 gi|215493929|gb|EEC03570.1| tRNA (cytosine-5-)-methyltransferase NSUN2, putative [Ixodes
           scapularis]
          Length = 498

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 91/254 (35%), Gaps = 69/254 (27%)

Query: 248 LCAAPGGKTAQLIVSGAK---------VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
           +CAAPG KTAQL+              V A DV  +R   L     RLH     +   DA
Sbjct: 1   MCAAPGSKTAQLMEMLHGRVSNIPTGVVVANDVDNKRCYMLVHQAKRLHSTCCLVTNHDA 60

Query: 299 FDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                              +D +L D PCS  GT+R++ D+    +  +       Q ++
Sbjct: 61  AAMPNIYLTNKDGTQEVVKYDRILCDVPCSGDGTLRKNVDLWRKWNVANGNSIHGLQVRI 120

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----------- 396
             +G+  +  GGI+V+S CSL+  + E VV  +L      VELV ++             
Sbjct: 121 ARRGLELLAEGGILVYSTCSLNPLEDEAVVASLLLQCEGAVELVDVSGRLPGLVSRPGLT 180

Query: 397 ------------------------------YWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
                                         +  S ++A  L  E  +RI P   +     
Sbjct: 181 TWKVSSKDMAVYTSFDQVPEMYHTQIRAQMFPPSPEVAAQLKLERCVRILPHQQD----- 235

Query: 427 SSGMDGFFAVALRR 440
                GFF   L++
Sbjct: 236 ---TGGFFVAVLKK 246


>gi|330898595|gb|EGH30014.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 226

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 18/226 (7%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77
           ++  + SL   L  +        +  RD+ L + +   T R+ PR+  +   +L      
Sbjct: 1   MLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLSGLAAKLLQKPFKA 55

Query: 78  KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
               ++ LL V + Q+ Y  +  +A +   V  A + K+      L+N++LR V R+   
Sbjct: 56  ADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRNVQRDGEA 114

Query: 138 LLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYIDLTVKFD-IETWAH 191
           LL  +    +     P W ++ L+  +  +   +  ++    P+ + +  + +  + +  
Sbjct: 115 LLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILRVNRRHNRRDQYLE 174

Query: 192 KLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231
            LN   L        +       P  + SLPGFAEG   VQD +A 
Sbjct: 175 LLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 220


>gi|289644511|ref|ZP_06476585.1| Fmu (Sun) domain protein [Frankia symbiont of Datisca glomerata]
 gi|289505673|gb|EFD26698.1| Fmu (Sun) domain protein [Frankia symbiont of Datisca glomerata]
          Length = 326

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 11/271 (4%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           +   I      L+ +     G  L+     +     F  G  ++Q+ S+ +P        
Sbjct: 54  IHRAIADLGLTLDPLDWCPDGYLLRGDKRVLSRSEVFGGGHAYIQNISSLVPALALAPAP 113

Query: 242 NLS----VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
             +    ++DLCAAPGGKTA +   + + A++ A D    RLEKLR    + H+   +  
Sbjct: 114 APAPDESIIDLCAAPGGKTAHIAALVGNEARLWANDGIAPRLEKLRAVTRQFHVRLAETS 173

Query: 295 EMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQG 351
              A        + FD VL+DA CS  G +               ++     QRK+L+  
Sbjct: 174 CHPAQYADKFITERFDRVLLDAQCSGEGLVDLRSSAALRYWTEQRVIDYGWLQRKMLVAA 233

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
              ++PGG++V+S C+   +++E  +  +LR  P+ V  + ++   +        L    
Sbjct: 234 CRLLRPGGVLVYSTCTFGPEENEAPLSYLLRHHPVEVCPIEVDIDGFAPDAWRPGLRHWR 293

Query: 412 WIRITPDMLEKIDGVSSG-MDGFFAVALRRL 441
                P + +    +     +GFF   LR+L
Sbjct: 294 TETFHPALADARRILPGPAFEGFFVCKLRKL 324


>gi|30690149|ref|NP_851079.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana]
 gi|30690152|ref|NP_197990.2| NOL1/NOP2/sun family protein [Arabidopsis thaliana]
 gi|26450438|dbj|BAC42333.1| unknown protein [Arabidopsis thaliana]
 gi|30793929|gb|AAP40417.1| unknown protein [Arabidopsis thaliana]
 gi|332006150|gb|AED93533.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana]
 gi|332006151|gb|AED93534.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana]
          Length = 567

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 91/462 (19%), Positives = 168/462 (36%), Gaps = 62/462 (13%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ--RDQILVRAIVNVTLRF 59
           +S + AR  ++++L  V+R                   +LS   R++    A+V  TL++
Sbjct: 93  RSALYARREAANILRTVLRG-----DAERRAVASIKSLVLSPSVRNKRGTFALVCETLKY 147

Query: 60  LPRIDAV--LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
           L  I  V  +  VL S   R++  +  +       IL+    D   +  A +   R K  
Sbjct: 148 LTVIKDVLDIANVLNSKWKRQEPLVFIV----CYDILFGK--DTPSIGDAEKFLMRHK-E 200

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
              + L   ++R+      +LL       + P + +           V  +        +
Sbjct: 201 ALLSGLATLLVRKKVDSVDQLLGSKLTGHLKPRYVRVNTLKMDVDSAVQELEK------H 254

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
             +     +                  +      + +    A G  ++Q  ++S+     
Sbjct: 255 YTVQKDETVPDLL--------------VLPPGSDLHAHRLVANGRIFLQGKASSMVAAAL 300

Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  VLD C+APG KT  L   +    K+ A ++++ R+++L   +        ++ 
Sbjct: 301 QPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIACELNEERVKRLEHTIKLSGASNIEVC 360

Query: 295 EMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVL---------WTRDTDDIVKSA 341
             D     PK        A+L+D  CS +GTI    D L            D+  + K A
Sbjct: 361 HGDFLGLNPKDPSFAKIRAILLDPSCSGSGTITDRLDHLLPSHSEDNNMNYDSMRLHKLA 420

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
            FQ+K L   +SF K    VV+S CS+ + ++E+VV  VL  +      +      W+  
Sbjct: 421 VFQKKALAHALSFPKVE-RVVYSTCSIYQIENEDVVSSVLPLASSLGFKLATPFPQWQRR 479

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            + +    E  +R+ P   ++         GFF     R  +
Sbjct: 480 GLPVFAGSEHLLRMDPVEDKE---------GFFIALFVRANK 512


>gi|159040978|ref|YP_001540230.1| Fmu (Sun) domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157919813|gb|ABW01240.1| Fmu (Sun) domain protein [Caldivirga maquilingensis IC-167]
          Length = 398

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 27/237 (11%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTA 268
           +  L  +  G+++ Q   A    +L     N +++DLC+APGGK   +     + A + A
Sbjct: 181 LRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPGGKATHVAQLSGNKAIIIA 240

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
           +D S  ++ ++  N  RL +     IE    +           D VL+D PCS  G    
Sbjct: 241 VDRSWSKVRQIEGNAARLGVRLMTYIEDSRFLHLNHPEFIGKADKVLIDPPCSDAGV--- 297

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P + +     D++    +QR+ +    S +KP G +++S C+L   ++E+ V+     +
Sbjct: 298 RPKLYYRLTMTDLINLVAYQRQFIKVAYSLLKPNGSLIYSTCTLPPMENEDNVKWA---T 354

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +   L  +N    +              R    +  +         GFF   L +L
Sbjct: 355 ELGFRLEYVNVPAGQ--------------RAFDGVSRRFHPHIQDTPGFFMAKLTKL 397


>gi|311265698|ref|XP_003130779.1| PREDICTED: putative methyltransferase NSUN6-like [Sus scrofa]
          Length = 472

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 45/270 (16%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263
           E +   P F +   G  ++Q+  +++   +        +LDLCAAPGGKT      +   
Sbjct: 200 EPVYLSPSFDDVLPGYLFLQNLPSAVVTHVLDPQPGERILDLCAAPGGKTTHIAARMRDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF------------DYCPKKLFDAVL 311
            +V ALD    ++EK++ N   L L +      D                   + FD +L
Sbjct: 260 GEVIALDKIANKVEKIKQNALLLGLNSIRAFCFDGTKALKLDIDTEGEPPFLPESFDRIL 319

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           +DAPCS  G   + P++  T    ++      QRKL    +  +KPGG++V+S C++   
Sbjct: 320 LDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLFTVAVELLKPGGVLVYSTCTVTLA 376

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++EE V   L + P  ++L   +     +  M   L+ E   ++     +     S   D
Sbjct: 377 ENEEQVAWALGTFPC-LQLQRQDPQIGGAGMMGAGLTSEQLKQL--QRFDPSVVPSWDTD 433

Query: 432 ---------------------GFFAVALRR 440
                                GFF     +
Sbjct: 434 IDSLRDTRTEDMIRLANQDCIGFFIAKFVK 463


>gi|301095335|ref|XP_002896768.1| tRNA (cytosine-5-)-methyltransferase NSUN2-like protein
           [Phytophthora infestans T30-4]
 gi|262108651|gb|EEY66703.1| tRNA (cytosine-5-)-methyltransferase NSUN2-like protein
           [Phytophthora infestans T30-4]
          Length = 653

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 107/289 (37%), Gaps = 67/289 (23%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----------VSGAKVTA 268
           AEG    Q+A + IP  L     +  VLD+CAAPG KT Q++           +   V A
Sbjct: 133 AEGNLSRQEAVSMIPALLLDVHPHHHVLDMCAAPGSKTTQIMEALISDKVSINTQGFVVA 192

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----------KKLFDAVLVDAPCSS 318
            D +++R   L   L RL L    +   +   +              +FD VL D PCS 
Sbjct: 193 NDANEKRGYLLVHQLQRLGLDNFVVTCHEGQKFPGLYNSNVELQRTNVFDRVLCDVPCSG 252

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG--IVVFSNCSLDKQDSEEV 376
            GTIR++ ++         +     Q  L L+  + ++  G  I+ +S CSL+  ++E V
Sbjct: 253 DGTIRKNRNLWGRWAPGSALTLHPIQIDLGLRAAALLRDDGDSIMTYSTCSLNPVENEAV 312

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMA---------MALSPEGWIR------------- 414
           V ++LR +   +ELV  +      I             A + +G  R             
Sbjct: 313 VAELLRRADGALELVDCSEKLSGLITRPGVTYWSVAWQARTAKGEARAPLQWFDQYESVP 372

Query: 415 ----------------------ITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                 I P    ++        GFF   LR++
Sbjct: 373 DFLQGSRILRSMFPPADEEIQKILP-RCLRLFPTDQNTGGFFVAVLRKV 420


>gi|126341505|ref|XP_001377237.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 467

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 101/270 (37%), Gaps = 45/270 (16%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  + +   +        +LD+CAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLSSSLFLQNLPSVVVSHVLNPQPGEKILDMCAAPGGKTTHIAALMRDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE------------MDAFDYCPKKLFDAVL 311
            +V A+D    ++EK++ N   L L                            + FD +L
Sbjct: 260 GEVIAMDKIPSKVEKIKQNAALLQLNCIRAFCCNGTKALGKIEDGQGGPPFSPESFDRIL 319

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           +DAPCS  G   + P++ +T    +++     QRKL    +  +KPGG++V+S C++   
Sbjct: 320 LDAPCSGMG---QRPNMTYTWTLKEVMSYQPLQRKLFTVAVQLLKPGGVLVYSTCTITLA 376

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++EE V   L + P  ++L            M   LS E   ++     +         D
Sbjct: 377 ENEEQVAWALTAFPC-LQLQSQEPHIGGEGMMGAGLSLEQLKQL--QRFDPSIIPLKSTD 433

Query: 432 ---------------------GFFAVALRR 440
                                GFF     +
Sbjct: 434 ITSIREARREDMIWLANKDCIGFFIAKFVK 463


>gi|256830872|ref|YP_003159600.1| Fmu (Sun) domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256580048|gb|ACU91184.1| Fmu (Sun) domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 414

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 25/277 (9%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASASI 232
           +  K  I+     L A           +L  ++ + P           G  ++QD S+ +
Sbjct: 11  VCAKDQIQDVEALLQAEGFRFEPQPCYDLARTLTAEPMPLGRSIAAKFGYIYIQDKSSML 70

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           P       +   VLD CA+PG KT  L         V A + S  RL  LR N+  L  Y
Sbjct: 71  PPLALAPASGDRVLDFCASPGSKTGILSSLVGPSGLVLANEPSPDRLATLRVNMRHLGCY 130

Query: 290 AEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                + +          +  +L+DAPCS  GT+ ++P        +        QR+LL
Sbjct: 131 NVATCKYEGQSLPLQDDSWPHILLDAPCSGWGTVDKNPKAAQMWAGEKTAPLETLQRELL 190

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
            +    + PGG +++S C+ + +++E+ V+  +      + LVP     +     A +  
Sbjct: 191 TKAAGLLAPGGRLLYSTCTTNVRENEDQVRFAMEH----LGLVPEPLTEFPGFKFAPS-- 244

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                   P  L  +DG  S   GFF  AL +  Q +
Sbjct: 245 -------LPGCLL-VDGEGSLAQGFFLAALGKPGQQE 273


>gi|323342019|ref|ZP_08082252.1| NOL1/NOP2/sun family protein [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464444|gb|EFY09637.1| NOL1/NOP2/sun family protein [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 432

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 124/299 (41%), Gaps = 19/299 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
             +   +++ L   +G+ +   I  A        L +                    I +
Sbjct: 1   MKLTADYQKMLIESFGEPQYQKIIAAYQMDSVHGLRLNPLKPCVLPFSGIASRIDPTILI 60

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SG 263
            +     V+ P    G +++QD +A+ PV       N  VLDLCAAPGGKT Q++   + 
Sbjct: 61  PDDYAKTVTHPLSHAGCYYIQDPTATTPVSALRVEPNDIVLDLCAAPGGKTTQILSALTT 120

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGT 321
             + + ++  +R  KL+ N DR       + +MD  +   K    FD VL+DAPCS  G 
Sbjct: 121 GFLISNEIDSKRNIKLQHNYDRWGSERGVVTQMDTDELVDKLNNTFDKVLLDAPCSGEGL 180

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            RR PD        + ++ +  Q++LL         GG++V+S C+L+  ++E+V+   L
Sbjct: 181 YRRTPDFALEFKNSEPLRFSRLQKQLLENAFRACVDGGVIVYSTCTLNFHENEQVILSFL 240

Query: 382 RSSP-IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
              P   +E V L+      + +   ++     R  P             +G F   +R
Sbjct: 241 EEHPKCQLEPVDLSEKSSGYLGLGEQVA-----RYFPSK---------DGEGHFIARIR 285


>gi|332702541|ref|ZP_08422629.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552690|gb|EGJ49734.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 421

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 15/243 (6%)

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQ 258
             RL   P ++        G  ++QD S+ +P  L       +VLD+CA+PG KT   AQ
Sbjct: 37  CRRLTVEPFALGESLAAFFGYVYIQDRSSMLPPLLLNPPEGAAVLDMCASPGSKTGLLAQ 96

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCS 317
           L+  G  V   + S+ RLE LR NL R++L                 + +  + +D PCS
Sbjct: 97  LVGQGGFVLGNEPSRDRLETLRQNLRRMNLLQAATCTYSGERLPLAARSWKCIQLDPPCS 156

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             GT+ ++P V+     D +      QR+LL      V PGG V++S C+ + +++EE  
Sbjct: 157 GWGTVDKNPQVMTLWSPDKVEPLVRLQRELLRTAAELVAPGGRVLYSTCTTNVRENEEQT 216

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
               +   + +E+ PL+     S + A+     G +R+        D V+SG  GFF   
Sbjct: 217 AWAAQE--LELEIRPLDPPAGFSFEPALG-GLAGVLRV--------DQVASGAQGFFLAC 265

Query: 438 LRR 440
           L +
Sbjct: 266 LEK 268


>gi|47221584|emb|CAF97849.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 448

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 10/197 (5%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTAL 269
            + P +  G + +Q AS+ +PV          VLD+ +APGGKT  +   + +   + A 
Sbjct: 94  SATPEYLSGQYMLQGASSFLPVMALSPQEGELVLDMSSAPGGKTTYIAQLMRNTGVIVAN 153

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDV 328
           D +  RL+ +  N+ RL +    +   D   +      FD VL+DAPCS TG I + P V
Sbjct: 154 DANAERLKSVVGNIHRLGVTNTVVCNYDGRQFPKVMGGFDRVLLDAPCSGTGVIAKDPAV 213

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
             ++D  DI +SA  Q++L+L  I  +      GG +V+  CS+  +++E VV   L+  
Sbjct: 214 KTSKDDADINRSAHLQKELILSAIDSINAESPTGGYLVYCTCSVMVEENEWVVDYALKKR 273

Query: 385 PIPVELVPLNSAYWKSI 401
              V+LVP    + K  
Sbjct: 274 --NVKLVPTGLDFGKEG 288



 Score = 43.0 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            +  +    S  MDGFF   L++
Sbjct: 418 QLSRRFYPHSHNMDGFFVAKLKK 440


>gi|300121772|emb|CBK22346.2| unnamed protein product [Blastocystis hominis]
          Length = 437

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 101/292 (34%), Gaps = 51/292 (17%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
             +      +   P FA+                 +A + IP        +  VLDLCAA
Sbjct: 114 WEINVGRNKLRKSPLFADLHSYLVEMTQAGVISRLEAVSMIPPLFLDVHPDHLVLDLCAA 173

Query: 252 PGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------P 303
           PG KT Q   ++    + A D + +R   L             +    A  +        
Sbjct: 174 PGSKTQQLLEMLKSGVIVANDANPQRALMLVNQTSHAPTTKLVVTSYLAQQFPVPRNAGK 233

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              FD +L D PCS  GT+R+ P++  T            Q  +L + +  +K GG +V+
Sbjct: 234 PVQFDRILCDVPCSGDGTLRKSPEIWSTWSLRYAQSLHSLQLSILARAVKLLKIGGKIVY 293

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW---KSIDMAMALSPEGWIRI----- 415
           S CSL+  ++E VV ++ R +   V LV ++  +    +   ++  +  +   R+     
Sbjct: 294 STCSLNPVENEAVVLEIWRQAEGAVRLVDVSRQFPDLSRGNGLSSWVVTDSENRVIPAGS 353

Query: 416 ------------------------TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                                    P+   +         GFF   L +  +
Sbjct: 354 EASTEHSTVKRSFFPPNEEERAAAHPEFAMRFLPHVQNRGGFFVCVLEKTAE 405


>gi|332877814|ref|ZP_08445552.1| NOL1/NOP2/sun family protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684109|gb|EGJ56968.1| NOL1/NOP2/sun family protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 503

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 120/318 (37%), Gaps = 19/318 (5%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196
              IP+ FK+      G ER    + A      + + +      W+  L         +V
Sbjct: 3   RPDIPQEFKDYARRLLGAERYARFAQALDEDPSVSVRLNPFKAVWSGLLAEDLNGVDGSV 62

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254
              +G              P F  G ++VQ+A++    Q         +  LDLCAAPGG
Sbjct: 63  PWASGEGCYLSERPPFTFDPLFHAGAYYVQEAASMFLGQILRRYVTRPVVALDLCAAPGG 122

Query: 255 KTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAV 310
           K+  +      G+ + + +  K R + L  NL +       +      D+      FD +
Sbjct: 123 KSTHIRSCLPEGSLLVSNEPVKARAQVLLENLTKWGHPDVIVTNSYPKDFARLPDFFDLL 182

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           + D PCS  G  R+  D +     + +      QR++L      +KPGG++V+S C+L+ 
Sbjct: 183 VTDVPCSGEGMFRKEEDAVTGWSMEAVRMCRDRQREILRDVWLSLKPGGLLVYSTCTLNA 242

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM---AMALSPEGWIRITPDMLEKIDGVS 427
            + EE V  +       +    +   +    ++   +         ++ P  +       
Sbjct: 243 LEDEENVAWIAEELGAEILPFDVEPGWGVVGNLLAVSSVKDTAKAEKLFP--VAHFIPGF 300

Query: 428 SGMDGFFAVALRRLIQPK 445
           +  +GFF   LR+  + +
Sbjct: 301 TRGEGFFLAVLRKNGEEE 318


>gi|195397375|ref|XP_002057304.1| GJ16427 [Drosophila virilis]
 gi|194147071|gb|EDW62790.1| GJ16427 [Drosophila virilis]
          Length = 725

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 122/392 (31%), Gaps = 76/392 (19%)

Query: 114 DKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
                 + + + SI   +         +    +++     +    +      L    A  
Sbjct: 53  CANEEEWTQFLASIRDNLPTTFRVTGFKDEAKALLNIIKTQLFTEYVRAVAELHELPAEQ 112

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
               + L    +   +   L    +       +     IV       G    Q+A + IP
Sbjct: 113 VERPLCLPWYPNGLAYQLHLTRKDIRRSEPLFRLHNFLIVETKA---GSISRQEAVSMIP 169

Query: 234 VQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDVSKRRLEKLRCN 282
             +        VLD+CAAPG KT            Q  +    V A DV   R   L   
Sbjct: 170 PLVLDVQPTDKVLDMCAAPGSKTAQLIEALHAAPEQHKIPPGFVLANDVDNNRCYMLVHQ 229

Query: 283 LDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             RL+     +   D+  +                 FD +L D PCS  GT+R++PD+  
Sbjct: 230 AKRLNSPCLLVTNHDSSFFPNLLQTDAATGNKSILKFDKILCDVPCSGDGTLRKNPDIWM 289

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
             +          Q +++ +G   +  GG +V+S CSL+  ++E V+Q++++ +   +EL
Sbjct: 290 KWNLAQAYNLHGVQYRIVRRGAEMLAVGGRLVYSTCSLNPIENEAVLQRIIKDADGALEL 349

Query: 391 VPL------------------------------------------NSAYWKSIDMAMALS 408
           V                                             + +         + 
Sbjct: 350 VDAAHLVPGLKHKPGMTNWKLATKEVDAVYSTFDEVPEQLHTIIRPAMFPLPAKELATIG 409

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E  +R+ P + +          GFF   + +
Sbjct: 410 LEKCMRVLPHLQDSG--------GFFVAVIEK 433


>gi|261333471|emb|CBH16466.1| member of the NOL1/NOP2/sun family of proteins [Trypanosoma brucei
           gambiense DAL972]
          Length = 806

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 138/388 (35%), Gaps = 48/388 (12%)

Query: 97  DVADYAVVDLAVEQAKRDKENRHFA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
            V     +D      K  K +R  +  +  N         +            +     E
Sbjct: 126 GVGSKIPMDENAPLLKYYKGDRFASLFECTNGADVGKEWCEFLTCATSPLPMTLRVHRNE 185

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214
           R+      E    + +       +   V     + A    +         ++ +  ++ +
Sbjct: 186 RVMVSIANE---FLKNDPTVSSVLRPVVPLMPTSVAFFGCSHAAYHADSYVEHICRTLHA 242

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------- 265
                      Q+  +++PV + G   + +VLD+CAAPG KT Q +    K         
Sbjct: 243 -----ASAVSFQEVVSALPVIVAGIQPHHTVLDMCAAPGSKTLQALDEMLKNGWNSSAVS 297

Query: 266 ---VTALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------------PKKLFD 308
              + A +  + +  + L   L R H         DA  +               ++ FD
Sbjct: 298 SGVMVANEKDRVKATQTLPARLKRYHAPNVICTRCDAVQWPRLLCPTTQGDMYLGERRFD 357

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            V+ D PCS  GT+R+ P +  +     +      QR LL +G+  ++  GI+V+S CSL
Sbjct: 358 RVICDVPCSGDGTLRKEPSLASSWSAGYVKSLLPTQRALLRRGLDLLETDGILVYSTCSL 417

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGW-IR--ITPDMLE 421
             ++ EEVV   L      VEL+ ++S   +           LSP+   +R    P+  +
Sbjct: 418 QPKEDEEVVCAGLELFGDAVELLDVSSILRECGVQLHSFGGLLSPDTTHLRNSALPNSYD 477

Query: 422 -----KIDGVSSGMDGFFAVALRRLIQP 444
                ++        GFF  A R+L  P
Sbjct: 478 GRKVLRVLPHKDDTGGFFIAAFRKLSGP 505


>gi|120601249|ref|YP_965649.1| Fmu (Sun) domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120561478|gb|ABM27222.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris DP4]
          Length = 431

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 14/259 (5%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +E   ++           RL E P  +        G+ ++QD S+ +P          +V
Sbjct: 26  LEAQGYRFIPEPFSPWSRRLVEEPRPLGGSLAAFFGLIYIQDRSSMLPPVALAPPPGSAV 85

Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDY 301
           LD+CA+PG KT  L         V   + ++ RL  LR NL  L+L +A           
Sbjct: 86  LDMCASPGSKTGFLAQLVGETGFVLGNEPNRSRLATLRQNLFTLNLLHAATCSYPGESLP 145

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P+  +D + +D PCS  GT+ R+P VL     D I      QR LL +    ++PGG V
Sbjct: 146 LPEGTWDCIQLDPPCSGWGTVERNPQVLKLWQGDKIRPLIALQRLLLAEARRLLRPGGRV 205

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V+S C+ +  ++E  V+  +    +  E VPL                EG +R+ P    
Sbjct: 206 VYSTCTTNVDENEAQVRYAIDE--LGFEPVPLEPPPGFVFAAPELPGCEGVLRVDPQGSA 263

Query: 422 KIDGVSSGMDGFFAVALRR 440
                     GFF  A RR
Sbjct: 264 AQ--------GFFVAAFRR 274


>gi|302346548|ref|YP_003814846.1| NOL1/NOP2/sun family protein [Prevotella melaninogenica ATCC 25845]
 gi|302150292|gb|ADK96553.1| NOL1/NOP2/sun family protein [Prevotella melaninogenica ATCC 25845]
          Length = 467

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 10/249 (4%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGK 255
                    +   +    P    G ++VQ+AS+     +        +  LDLCAAPGGK
Sbjct: 91  PWCKEGYWLDTRPNFTFDPLLHAGAYYVQEASSMFLSHVLQHLVKQPVMALDLCAAPGGK 150

Query: 256 TAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311
           T        +G+ + + +   +R + L  N+ +       +      DY   K  FD ++
Sbjct: 151 TTCARTSLPAGSFLFSNEPIGKRAQILAENVQKFGHEGVAVTNNYPRDYKKTKLGFDVII 210

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  G  R+ P  +      ++      QR ++      +KPGGI+++S C+ +  
Sbjct: 211 ADVPCSGEGMFRKDPQSIEEWSLQNVENCWQLQRSIIADIWDNLKPGGILIYSTCTFNAH 270

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           + EE +  +L      +  VP   A+  +  +      +G  R  P  + +     +  +
Sbjct: 271 EDEENIAWILNEYDAELLSVPTEEAWNITGSLIDNPLKDG--REFP--VYRFIPGKTRGE 326

Query: 432 GFFAVALRR 440
           G F   +R+
Sbjct: 327 GIFMAIIRK 335


>gi|20094206|ref|NP_614053.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19887231|gb|AAM01983.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 356

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 26/234 (11%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TA 268
           +     +  G  + Q   + + V+        +V+DLCAAPGGK + +           A
Sbjct: 142 VRETEAYRRGWVYSQGLPSILAVEALSPEPGETVVDLCAAPGGKCSHVAQITGPESKIVA 201

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHP 326
           +D S  RLE++   L RL +   + +  DA       +   D VLVD PC++ G     P
Sbjct: 202 IDRSAPRLERMEARLRRLGIDWVETVHGDARKVVRRLRGTADVVLVDPPCTALGV---RP 258

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +      ++ +    +Q  LL  G   +K GG +++S C+L   ++E VV++ +R    
Sbjct: 259 KLWVEATYEEALGLPSYQYSLLRAGYEVLKEGGRLLYSTCTLTPTENELVVERAIRE--- 315

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            + L P       +      +         P   +          GFF   L +
Sbjct: 316 -LNLEPETPVLRPARRSGPGVV------FLPHRADVP--------GFFYAVLVK 354


>gi|192359919|ref|YP_001982883.1| tRNA and rRNA cytosine-C5-methylase [Cellvibrio japonicus Ueda107]
 gi|190686084|gb|ACE83762.1| tRNA and rRNA cytosine-C5-methylase [Cellvibrio japonicus Ueda107]
          Length = 442

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 112/321 (34%), Gaps = 41/321 (12%)

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
               +      +A  + + +W  E   +F+ ++  L             ++ +   +T  
Sbjct: 148 WYGLRPGWTGLLAERARLSDWSSEECRHFFHQQTQLP---PLWLRPQQGVSAQVMADTLV 204

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
            +  +  L   G    +    + S   + +G+  +QD ++              V D CA
Sbjct: 205 KQGVSARLDLQGNLFAQGGRGLASTAAYQQGLVEIQDWASQQIAAAVQAQPGQKVWDCCA 264

Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-------AFD 300
             GGKT  +   + +   + A D+   +LE+L+    R  L+                 +
Sbjct: 265 GAGGKTLAIAAPMENKGVLVATDLYAYKLEELKRRAKRAGLFNLRSFTWTGEQPLQLPQE 324

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              ++ FD VLVDAPC+++GT RR+PD  W  +  D  +    QR+LL      V+PGG 
Sbjct: 325 IARQQGFDWVLVDAPCTASGTWRRNPDARWRFNPADTQELVDIQRRLLDLAALSVRPGGH 384

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CS    ++E          P                               P   
Sbjct: 385 LVYATCSWQYAENEAQADAFCARHPAFE----------------------------PVSQ 416

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
             +       D  F    RRL
Sbjct: 417 RLVGAPRQDSDTMFVAVFRRL 437


>gi|118474156|ref|YP_892281.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|261885964|ref|ZP_06010003.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. venerealis
           str. Azul-94]
 gi|118413382|gb|ABK81802.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 287

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 24/235 (10%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTA 268
           +     F  G  ++Q+ S+ +           +VLD+CA+PGGK    +  +     +  
Sbjct: 72  LTHCDLFNSGKIYIQNPSSFLAPLTLNAAPGQTVLDMCASPGGKSIALSNFMEKNGYLAT 131

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHP 326
           ++    R   L+ NL + +         DA          FD +L+DAPCSS      + 
Sbjct: 132 MESDTNRFFTLKSNLKKYNCEWVKTYNKDARSVSRTCYEKFDKILLDAPCSSYSCYNEN- 190

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
                +   +I   +  Q++LL   ++ +K GG +V+S C+  K+++EEV++  L S   
Sbjct: 191 --FKEKSYKEIKNISKLQKQLLNSALNALKSGGEIVYSTCTFYKEENEEVIKNALNS-KF 247

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++++P++      +++   +  E  IRI PD           MD FF   L +L
Sbjct: 248 KIQILPID------VNLQQVVKSEFGIRILPDDT---------MDAFFISHLIKL 287


>gi|298479695|ref|ZP_06997895.1| NOL1/NOP2/sun family protein [Bacteroides sp. D22]
 gi|298274085|gb|EFI15646.1| NOL1/NOP2/sun family protein [Bacteroides sp. D22]
          Length = 510

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 9/231 (3%)

Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
           P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+         G+ + A +
Sbjct: 92  PLFHAGCYYVQEASSMFVEQVLRQYVTGPVKMLDLCAAPGGKSTHARSVLPEGSLLVANE 151

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329
           V + R + L  NL +       +   D  D+      FD +L D PCS  G  R+ P  +
Sbjct: 152 VIRNRSQILAENLTKWGHPDVVVTNNDPADFAALPSFFDVILTDVPCSGEGMFRKDPVAV 211

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
               ++++      QR+++      +KPGG++++S C+ + ++ EE  + + +       
Sbjct: 212 EEWSSENVEICWQRQRRIIGDIWDTLKPGGVLIYSTCTFNTKEDEENARWIQQEYGAEPL 271

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            V +   +  + D+ +  + +G     P  +       +  +GFF  A R+
Sbjct: 272 TVQVQENWNITGDL-LPDNCDGSKSSIP--VYHFFPHKTKGEGFFLAAFRK 319


>gi|296242035|ref|YP_003649522.1| Fmu (Sun) domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094619|gb|ADG90570.1| Fmu (Sun) domain protein [Thermosphaera aggregans DSM 11486]
          Length = 386

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 25/308 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLA-ISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT 200
           A     P W  + L            + +      ++ +  V   IE     L    +  
Sbjct: 90  AKKYSYPTWIVKELLKHLPAGEAERTLRNLNEKKRWVRINIVNSTIEEALECLEKEGVKF 149

Query: 201 GGIRLK-------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
               +             I +   F +G    +D S+ I V+         +LD C+APG
Sbjct: 150 QRHHMFEDLLRIANPFYPIGNSKCFKKGYLTPEDLSSYILVENAMKYIGSPILDACSAPG 209

Query: 254 GKTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDAFDYCPKKLFDAVL 311
            K   ++        A+D S +RL   +  L++  +  +  ++  D+        F  V+
Sbjct: 210 TKLFHVLSRRLLKAIAVDYSSKRLLDAKKILEKYVNQGSIILVNGDSRILAFNNRFSIVI 269

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           VDAPC+ +G +   P V        +   +  Q++L+   +     GG ++++ CS+   
Sbjct: 270 VDAPCTGSGAVYADPSVKLRLTRHRLRNYSLIQQELVRNVLKL---GGNILYATCSIIPY 326

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           + E++++++ +     +EL  L   Y  +      +S     RI P  +E          
Sbjct: 327 EGEKIIEEIYKE--GSIELQELRGEYIDTAYPGYGVS-YKTYRIYPHKVEGQ-------- 375

Query: 432 GFFAVALR 439
           GFF    R
Sbjct: 376 GFFISIFR 383


>gi|323446955|gb|EGB02944.1| hypothetical protein AURANDRAFT_68423 [Aureococcus anophagefferens]
          Length = 626

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 119/353 (33%), Gaps = 28/353 (7%)

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            + K N+  A    +                      P     R+ +         +   
Sbjct: 2   PKAKPNKQGAARFEAYYALQHIVPDSEWPAFLKTLATPLPITFRITDATHDGHAAWLEAE 61

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS---LPGFAEGVWWVQDA 228
                   L       + A                   ++ +    + G        Q+A
Sbjct: 62  AARLGATRLPWYACGASTAWTFAGESRRGLRAARDAARDAALRDFLVSGTTSRNLSRQEA 121

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD- 284
            + +P  L G     +VLD CAAPG KTAQ       G  V A D+SK+R   L C+   
Sbjct: 122 VSMVPALLLGAAPGWAVLDACAAPGNKTAQLLERCGPGGLVVANDLSKKRSYALACHCAA 181

Query: 285 RLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           RL + A  ++           P   FD VL D PCS  GTIR+ P V      D   +  
Sbjct: 182 RLGVRAARLVVASGDAARLPGPDGRFDGVLCDVPCSGDGTIRKAPRVREAWACDGGDRLH 241

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP--------IPVELVPL 393
             Q  +  +  + ++PGG +V+S CSL+  ++E VV +VLR  P         P+   P 
Sbjct: 242 GTQVAIARRCAALLRPGGRMVYSTCSLNPVENEAVVAEVLRLEPTLELAAAASPLPARPG 301

Query: 394 NSAYWKSIDMAMA---LSPEGWIRITP-------DMLEKIDGVSSGMDGFFAV 436
            + +    D       L  +G  R  P       +   +         GFF  
Sbjct: 302 LTTWAPCRDDGGGVARLDDDGGSRFPPKQDAPPLERCLRFLPHDGDTGGFFCA 354


>gi|297519395|ref|ZP_06937781.1| 16S rRNA methyltransferase B [Escherichia coli OP50]
          Length = 161

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 6/144 (4%)

Query: 249 CAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCP 303
           CAAPGGKT     +   A+V A+D+ ++RL ++  NL RL + A  + + D      +C 
Sbjct: 1   CAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKAT-VKQGDGRYPSQWCG 59

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           ++ FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L      +K GG +V+
Sbjct: 60  EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY 119

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIP 387
           + CS+  +++   ++  L+ +   
Sbjct: 120 ATCSVLPEENSLQIKAFLQRTADA 143


>gi|307825577|ref|ZP_07655795.1| NusB antitermination factor [Methylobacter tundripaludum SV96]
 gi|307733463|gb|EFO04322.1| NusB antitermination factor [Methylobacter tundripaludum SV96]
          Length = 144

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +  NAR  +   L        +L+ +      +     L    +     +     + 
Sbjct: 1   MSQARTNARKAAVQALYQWQMAGQNLSEIERQFLEEER---LKDAQKSYFVELFYGVPKN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
           L  ID VL   +   +       + +LR+ V ++LY L++    V++  +  AK D    
Sbjct: 58  LDAIDQVLSEFVDRPVDTIDPVERAILRIGVYELLYRLNMPYRVVLNEGINLAK-DFGAD 116

Query: 119 HFAKLVNSILRRVSRE 134
              K VN IL +V+++
Sbjct: 117 GSHKYVNGILDKVAQQ 132


>gi|299148011|ref|ZP_07041074.1| NOL1/NOP2/sun family protein [Bacteroides sp. 3_1_23]
 gi|298514194|gb|EFI38080.1| NOL1/NOP2/sun family protein [Bacteroides sp. 3_1_23]
          Length = 504

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 11/302 (3%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
              +P  F +      G E    ++ A      + + +  +     H L+  +  +    
Sbjct: 17  KMELPASFIDYTRALLGDEEYDKLAVALQQESPVSIRL--NQLKINHSLSDKVPWSSEGF 74

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI-- 260
             E   +    P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+      
Sbjct: 75  YLEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPVKMLDLCAAPGGKSTHARSV 134

Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSS 318
              G+ + A +V + R + L  NL +       +   D  D+      FD +L D PCS 
Sbjct: 135 LPEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDVILTDVPCSG 194

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+ P  +     +++      QR+++      +KPGGI+++S C+ + ++ EE  +
Sbjct: 195 EGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFNTKEDEENAR 254

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + +        V +   +  + D+   LS +G    +   +       +  +GFF VA 
Sbjct: 255 WIQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTKGEGFFLVAF 311

Query: 439 RR 440
           R+
Sbjct: 312 RK 313


>gi|260823572|ref|XP_002604257.1| hypothetical protein BRAFLDRAFT_211078 [Branchiostoma floridae]
 gi|229289582|gb|EEN60268.1| hypothetical protein BRAFLDRAFT_211078 [Branchiostoma floridae]
          Length = 419

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 81/408 (19%), Positives = 154/408 (37%), Gaps = 31/408 (7%)

Query: 44  RDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAV 103
           +++  + A++  TL++   ID ++       L R+K+  + + +V V + L+       +
Sbjct: 30  KNKRQLYALLCETLKYGSIIDDIIT--STQLLKREKFLKKHMAQVLVYEQLFGK--GLQI 85

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
                E   R+K   H A +   +  +VSR +  L   +     +P + +        +E
Sbjct: 86  GGKYREAMNRNKTALHSALVRLKVRSKVSRNEDLLPDTVKSQVSLPRYVRVNTLKISVEE 145

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
            +  +  A        L  K  +E               + +            +  G  
Sbjct: 146 AIEKLKKA-----GFSLADKPSVEDLETGQFVQDPHIPALLVFPPETGFHDNQLYKSGEI 200

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
            +QD ++ IP Q+        V+D CAAPG KT+ +   + +  K+ A D+  +RL  +R
Sbjct: 201 ILQDKASCIPAQVLAPPPGACVIDACAAPGNKTSHMASLMQNNGKIFAFDIDAKRLATMR 260

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVLW---TRD 333
               R  +    ++     +  P        + +L+D  CS +G   R   +     +  
Sbjct: 261 SLTQRAGVSCAQLVHGSFLECDPGDPRYSGVEYILLDPSCSGSGIANRLDHLTDEEGSIS 320

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
           T+ +   A FQ   L   +SF  P    V +S CS+ +Q++E+VVQ  L+       L  
Sbjct: 321 TERLESLAQFQLSALRHALSF--PAARRVAYSTCSVHRQENEDVVQAALQEYEGKYHLQH 378

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +    W+             IR +P+            +GFF     +
Sbjct: 379 ILPT-WRHRGTDTFPQAHRCIRASPEQDR--------TNGFFVALFEK 417


>gi|313680456|ref|YP_004058195.1| fmu (sun) domain protein [Oceanithermus profundus DSM 14977]
 gi|313153171|gb|ADR37022.1| Fmu (Sun) domain protein [Oceanithermus profundus DSM 14977]
          Length = 450

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 114/309 (36%), Gaps = 21/309 (6%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           ++ +P  F  ++    G E    +           L V     T A        P   I 
Sbjct: 1   MAELPGAFLNKMAELLGDEYPDFLRALTEEERSHGLRVNTLKLTPAELRARAPWPLEPIP 60

Query: 205 L------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                            P    G++++Q+ SA    ++        VLDL AAPGGKT  
Sbjct: 61  WSPAGFYYPPEARPGPHPYHYAGLYYIQEPSAQAVGEVLDPRPGERVLDLAAAPGGKTTH 120

Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVDA 314
               +     + A +V   R+  L  NL+R       +    A         FD VL+DA
Sbjct: 121 LAAKMAGRGLLVANEVDSGRIRGLLDNLERWGSTQAVVQAPVARLAERWGAFFDRVLLDA 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+ P            ++A  Q +LL    + V+PGG++V++ C+   +++E
Sbjct: 181 PCSGEGMFRKEPAAAARWGPAAPARAAAVQARLLEAAAALVRPGGVLVYATCTFAPEENE 240

Query: 375 EVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSP--EGWIRITPDMLEKIDGVSSGMD 431
            VV   LR+ P   VE   L+ ++   +       P  E   R+ P  L           
Sbjct: 241 GVVGAFLRTHPEFDVEDARLHPSFAPGVPAWGGGEPRLERAARLWPHRLRGE-------- 292

Query: 432 GFFAVALRR 440
           G F   L R
Sbjct: 293 GHFLARLVR 301


>gi|305663689|ref|YP_003859977.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378258|gb|ADM28097.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
          Length = 390

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 21/238 (8%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVT 267
            I  LP + EG+ + Q   A    ++        ++D+CAAPGGKT  ++      A + 
Sbjct: 166 PIRELPEYREGLIYPQSLPAMYVSRVVDPKPGEIIVDMCAAPGGKTGHMVELSRGKAYIF 225

Query: 268 ALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIR 323
           A D S++R+E+++  LDRL      +I   D+       P    D +L+D PCS+ G   
Sbjct: 226 AFDHSRKRIEEMKNTLDRLGYRQLVEIWRADSRYLHIDFPWIKADKILIDPPCSALGV-- 283

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
             P +   +   DIV ++ +Q + L      VK GGI+V+S C++  +++E+V+++ +  
Sbjct: 284 -RPKIYDRKSYSDIVSASRYQIQFLKSASIIVKIGGIIVYSTCTVTVEENEDVIERFINE 342

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +        +++   +        + E + R  P +            G+F   ++R 
Sbjct: 343 NRCFDV---IDTNISRGSRGVFGDNRELYTRFHPHI--------HDTTGYFIAKIKRK 389


>gi|195127777|ref|XP_002008344.1| GI13435 [Drosophila mojavensis]
 gi|193919953|gb|EDW18820.1| GI13435 [Drosophila mojavensis]
          Length = 443

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 16/230 (6%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL--- 279
           Q+  + + V++        +LD+CAAPG KT  +   + +   + ALD S  R+  +   
Sbjct: 212 QNLPSMVCVRVLDPQPGERILDMCAAPGNKTTHMAELMCNRGTIIALDNSASRVRSMTEK 271

Query: 280 -----RCNLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWT 331
                     +           D     P      FD +L+DAPCS  G   R       
Sbjct: 272 LANYTCITAHQFDATKAWDDNSDLDSIAPPFASGSFDRILLDAPCS--GLGNRPQLCCNI 329

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
           +    +      QR +L Q +  ++PGGI+V+S C++ + + EE+V   LR       + 
Sbjct: 330 KQPKVLQSYPHIQRNILSQAVPLLRPGGILVYSTCTVTEAECEEIVSWALRKYTELQLVD 389

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    + +    + +  +        +    +    GFF    ++ 
Sbjct: 390 ATPKLGAPGLPLPGLEAAQCDLLQRFGPSRENRMQNLDTVGFFIAKFQKK 439


>gi|320038835|gb|EFW20770.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Coccidioides posadasii
           str. Silveira]
          Length = 829

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 61/240 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL+     +   DA  Y   +                  FD 
Sbjct: 236 IANDSDYKRAHMLIHQMKRLNSPNLLVTNHDATMYPSIRLPSLPVADGKRSPNRYLKFDR 295

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L++ +  +KPGG VV+S CS++
Sbjct: 296 ILADVPCSGDGTARKNVNVWKDWNPANGIGLHPTQARILVRALQMLKPGGRVVYSTCSMN 355

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDM 403
             ++E V+   +     P  VE+V  ++                          W+ ++ 
Sbjct: 356 PIENEAVIASAIDRCGGPEKVEIVDCSNELQGLRRSPGLTSWTVMDKQGRIWNTWQDVEK 415

Query: 404 AMALSPEGWIRITPDMLE--------------KIDGVSSGMDGFFAVALRRL----IQPK 445
                 E   RI   M                ++        GFF   L +      +P+
Sbjct: 416 GADGGDETLKRIVEGMFPPSEQSEAANLSRCMRVYPHQQDTGGFFITVLEKKGEIRAKPE 475


>gi|325269974|ref|ZP_08136583.1| NOL1/NOP2/sun family protein [Prevotella multiformis DSM 16608]
 gi|324987697|gb|EGC19671.1| NOL1/NOP2/sun family protein [Prevotella multiformis DSM 16608]
          Length = 443

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 10/249 (4%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGK 255
                    E   +    P    GV++VQ+AS+     +      + +  LDLCAAPGGK
Sbjct: 64  PWCKEGYWLESRPNFTFDPLLHAGVYYVQEASSMFLSHVLRQWVKHPVMALDLCAAPGGK 123

Query: 256 TAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311
           T         G+ + + +   RR + L  N+ +       + +    DY   K +FD ++
Sbjct: 124 TTCARTALPEGSFLFSNEPVGRRAQILAENVQKFGHGDIAVTQNYPRDYKKSKLVFDVII 183

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  G  R+ P  +    T ++      QR ++      +KPGGI+V+S C+ +  
Sbjct: 184 ADVPCSGEGMFRKDPQSIAEWSTQNVENCRQLQRSIIADIWDNLKPGGILVYSTCTFNAH 243

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           + EE V  +L      +  VP   A+  +  +       G     P  + +     +  +
Sbjct: 244 EDEENVAWILHEYGAELLPVPTKEAWNITESLVGNPLKNG--HAFP--VYRFIPGRTRGE 299

Query: 432 GFFAVALRR 440
           G F   +R+
Sbjct: 300 GLFMAVIRK 308


>gi|297680174|ref|XP_002817877.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase
           NSUN5-like [Pongo abelii]
          Length = 314

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 23/251 (9%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L        V++ CAAPG KT+ L     
Sbjct: 34  VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVINACAAPGNKTSHLAALLK 93

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317
           +  K+ A D+  +RL  +   L R  +   ++ E D     P          +L+D  CS
Sbjct: 94  NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCS 153

Query: 318 STGTIRRHPDVLWTRDTDDI--VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373
            +G   R  +               A FQ++ L   ++F  ++    +++S CSL ++++
Sbjct: 154 GSGMPSRQLEEPGAGTPSPACLQALAGFQQRALCHALTFPSLQ---RLIYSTCSLCREEN 210

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E+VV+  L+ +P    L P   A W    ++     +  +R +P+             GF
Sbjct: 211 EDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGADHCLRASPETTLSS--------GF 261

Query: 434 FAVALRRLIQP 444
           F     R+  P
Sbjct: 262 FVAVTERVEVP 272


>gi|119186591|ref|XP_001243902.1| hypothetical protein CIMG_03343 [Coccidioides immitis RS]
          Length = 828

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 61/240 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL+     +   DA  Y   +                  FD 
Sbjct: 236 IANDSDYKRAHMLIHQMKRLNSPNLLVTNHDATMYPSIRLPSLPVADGKRSPNRYLKFDR 295

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L++ +  +KPGG VV+S CS++
Sbjct: 296 ILADVPCSGDGTARKNVNVWKDWNPANGIGLHPTQARILVRALQMLKPGGRVVYSTCSMN 355

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDM 403
             ++E V+   +     P  VE+V  ++                          W+ ++ 
Sbjct: 356 PIENEAVIASAIDRCGGPEKVEIVDCSNELQGLRRSPGLTSWTVMDKQGRIWNTWQDVEK 415

Query: 404 AMALSPEGWIRITPDMLE--------------KIDGVSSGMDGFFAVALRRL----IQPK 445
                 E   RI   M                ++        GFF   L +      +P+
Sbjct: 416 GADGGDETLKRIVEGMFPPSEQSEAANLSRCMRVYPHQQDTGGFFITVLEKKGEIRAKPE 475


>gi|322778737|gb|EFZ09153.1| hypothetical protein SINV_02088 [Solenopsis invicta]
          Length = 603

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 165/444 (37%), Gaps = 45/444 (10%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF-V 70
           ++++  V     SL  L+  +   +            +  +   TLR LP++D +LD   
Sbjct: 19  ANIVRRVREDGASLKTLIYEKKHPNV---------AGIYGLSVNTLRALPQLDQLLDKTQ 69

Query: 71  LISSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           ++   PR       L RV + ++L+    L      V+ +   + K  +E ++ A +   
Sbjct: 70  ILREQPRLDPW---LARVLITELLWRKGCLKSGSKPVLTVLAYENKLREEFKNLAHVETL 126

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           ++ +    K   ++    +        E+  + + ++    +S +     Y+       +
Sbjct: 127 VVDKEKVIKPRYVRINTLLLS-----VEKAISIFQEDGWQLLSRSTTYSSYLR-----SL 176

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
              +       L    I +           G+  G   +QD ++  PV L   +    VL
Sbjct: 177 SQLSKPYFIQDLHIPEILVFPSSTLFHEHNGYRNGELILQDKASCFPVHLLDPVRGSVVL 236

Query: 247 DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           D+CAAPG K       + +  KV A+++  +R E L   + + H    + +  DA    P
Sbjct: 237 DMCAAPGMKATHVAAKLQNCGKVYAVEIDAKRFEILVSQIKKTHSSCVESLNQDALTLDP 296

Query: 304 KKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTD--DIVKSACFQRKLLLQGISFVKPGG 359
           K       +LVD PCS +G + R          +   +     FQ  LL   +       
Sbjct: 297 KLYSHVEYILVDPPCSGSGIVDRPKQSDMDGKPELERLQNLQSFQVYLLRYALFNFPNAK 356

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSIDMAMALSPEGWIRIT 416
            +++S CSL  +++EEV+ +VL        L+P+       WK+   A     +  +   
Sbjct: 357 RIIYSTCSLHPEENEEVIDEVLADIGNAYRLLPVRQLLKNNWKNFSSAKYNCGDTCLYSK 416

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           PD             GFF     R
Sbjct: 417 PDDDFCN--------GFFVAVFER 432


>gi|303317660|ref|XP_003068832.1| NOL1/NOP2/sun family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240108513|gb|EER26687.1| NOL1/NOP2/sun family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 829

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 61/240 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL+     +   DA  Y   +                  FD 
Sbjct: 236 IANDSDYKRAHMLIHQMKRLNSPNLLVTNHDATMYPSIRLPSLPVADGKRSPNRYLKFDR 295

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L++ +  +KPGG VV+S CS++
Sbjct: 296 ILADVPCSGDGTARKNVNVWKDWNPANGIGLHPTQARILVRALQMLKPGGRVVYSTCSMN 355

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDM 403
             ++E V+   +     P  VE+V  ++                          W+ ++ 
Sbjct: 356 PIENEAVIASAIDRCGGPEKVEIVDCSNELQGLRRSPGLTSWTVMDKQGRIWNTWQDVEK 415

Query: 404 AMALSPEGWIRITPDMLE--------------KIDGVSSGMDGFFAVALRRL----IQPK 445
                 E   RI   M                ++        GFF   L +      +P+
Sbjct: 416 GADGGDETLKRIVEGMFPPSEQSEAANLSRCMRVYPHQQDTGGFFITVLEKKGEIRAKPE 475


>gi|195133514|ref|XP_002011184.1| GI16150 [Drosophila mojavensis]
 gi|193907159|gb|EDW06026.1| GI16150 [Drosophila mojavensis]
          Length = 725

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 123/392 (31%), Gaps = 76/392 (19%)

Query: 114 DKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173
             +   + + + SI   +         +    +++     +    +      L    A  
Sbjct: 53  CADEEEWTQFLASIRENLPTTFRVTGFKDEAKALLNIIKTQLFTEYVRAVAELHELPAEQ 112

Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233
               + L    +   +   L    +       +     IV       G    Q+A + IP
Sbjct: 113 VERPLCLPWYPNGMAYQLHLTRKDIRRSEPLFRLHNFLIVETTA---GSISRQEAVSMIP 169

Query: 234 VQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDVSKRRLEKLRCN 282
             +        VLD+CAAPG KT            Q  +    V A DV   R   L   
Sbjct: 170 PLVLDVQPTDKVLDMCAAPGSKTAQLIEALHASPEQHKIPPGFVLANDVDNNRCYMLVHQ 229

Query: 283 LDRLHLYAEDIIEMDAFDYCP------------KKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             RL+     +   D+  +                 FD +L D PCS  GT+R++PD+  
Sbjct: 230 AKRLNSPCLLVTNHDSSFFPNLLQTDVATNAKTILKFDKILCDVPCSGDGTLRKNPDIWM 289

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
             +          Q +++ +G   +  GG +V+S CSL+  ++E V+Q++++ S   +EL
Sbjct: 290 KWNLAQAYNLHGVQYRIVRRGAEMLAVGGRLVYSTCSLNPIENEAVLQRIIKDSEGALEL 349

Query: 391 VPLNSA------------------------------------------YWKSIDMAMALS 408
           V  +                                            +         + 
Sbjct: 350 VDASHLVPGLKYKPGMTDWKLATKEVDAIYTSFDQVPEQLHTIIRPTMFPLPAAEMSQIG 409

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E  +R+ P + +          GFF   + +
Sbjct: 410 IEKCMRVLPHLQDSG--------GFFVAVIEK 433


>gi|14601183|ref|NP_147715.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
 gi|5104768|dbj|BAA80083.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
          Length = 388

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 26/237 (10%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TA 268
            +  LPGF EG+ + Q  ++    +         V+DL AAPGGK + +     +     
Sbjct: 170 RVSELPGFREGLVYGQSVTSMYVARALDPRPGWVVVDLNAAPGGKVSHVAQLAGREAVIV 229

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIR 323
                 ++ +LR  L+RL      ++  D+              DAVLVD PC++ G I 
Sbjct: 230 AIDRPSKVGRLRETLERLGAGWVRVVGGDSRRASRLLPGLAGRVDAVLVDPPCTNIGVIP 289

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           +   V   +   D   ++ +Q   + +    ++ GG++ +S C+L   ++E +V +    
Sbjct: 290 K---VFDVKTLRDSAAASRYQWMFVEEAWRLLRRGGLLAYSTCTLSSLENELIVARA--- 343

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                            +  +  L P    R    +  + +    G  GFF   L +
Sbjct: 344 -----------EELGFRLTWSWGLRPSRGRRSW--LGFRWEPHRDGTPGFFLAILEK 387


>gi|19173366|ref|NP_597169.1| PUTATIVE METHYLTRANSFERASE [Encephalitozoon cuniculi GB-M1]
 gi|19170955|emb|CAD26345.1| PUTATIVE METHYLTRANSFERASE [Encephalitozoon cuniculi GB-M1]
          Length = 515

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 120/329 (36%), Gaps = 48/329 (14%)

Query: 150 EWFKERLENFYGKERV---LAISDACISPLYID-LTVKFDIETWAHKLNAVMLPTGGIRL 205
           EW ++ L   +   R      I        ++  +    D+  +  +     +       
Sbjct: 26  EWIEKDLAYAFRVARTPLTNMIKRRIEKYPFVRRIRYLEDVYEFRKRKEKDDVYREFTGF 85

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSG 263
                +I         V   Q+  + +PV L     +  V+D+CAAPG KT Q    V+ 
Sbjct: 86  LINQTNIG--------VIQRQEIVSMVPVLLMDLKKDSRVIDMCAAPGSKTKQILEAVTD 137

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK------LFDAVLVDAPCS 317
             V A DV+ +RL+ L     +    +  + + DA  +          +FD V  D  CS
Sbjct: 138 GLVIANDVNGKRLKVLVSETTKRPNGSLIVTKHDATAFPSIYEGGSQVMFDRVFCDVICS 197

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
           S GT+R+ P +L              Q ++L +G   V  GG+V +S CSL+  ++E VV
Sbjct: 198 SDGTMRKSPGILDEWKLSKSGGLFDTQWRILKRGCDLVAEGGLVSYSTCSLNPIENECVV 257

Query: 378 QKVLRSSPIPVELVPLN-----SAYWKSIDMAMALSPEGWIRIT---------PDMLE-- 421
           Q++L       ELV        + +    D    +  EG +R           P      
Sbjct: 258 QRMLLE--GDFELVDFRGDSRLALFPSGGDGTKLIFREG-LRKWGTDDQIFKNPHYQPCR 314

Query: 422 ---------KIDGVSSGMDGFFAVALRRL 441
                    ++        GFF   LRR 
Sbjct: 315 VDLGLEKCIRLYPHDQDTGGFFIAILRRK 343


>gi|326669730|ref|XP_001919347.3| PREDICTED: putative methyltransferase NSUN6-like [Danio rerio]
          Length = 462

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 107/265 (40%), Gaps = 38/265 (14%)

Query: 210 ESIVSLPGFA---EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  + +   + G      VLD+CAAPGGKT  +   + + 
Sbjct: 201 EPLYQSPSFDGVLTDELFLQNLPSVVVGYVLGPRPGERVLDMCAAPGGKTTHIASLMGNQ 260

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--------------YCPKKLFDA 309
             V AL+  + ++EK+  N   L L        ++                  P++ FD 
Sbjct: 261 GVVVALEKVRSKMEKILRNAQMLKLDCIKAYCCNSIHAVSSDPAQEYTEGPPFPEESFDR 320

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++ ++    ++      QRKL    +  +K GG++V+S C++ 
Sbjct: 321 ILLDAPCSGLG---QRPNMSYSWSLKEVCSYQPLQRKLFTTAVRLLKSGGVLVYSTCTVT 377

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPDMLEKID-- 424
             ++EE V   L++ P  + L P          +   LS E      R  P++    +  
Sbjct: 378 LAENEEQVSWALKTFPC-LTLQPQVPHVGSEGMLGAGLSCEQRRLLQRFRPELGWTGERF 436

Query: 425 ---------GVSSGMDGFFAVALRR 440
                      +    GFF     +
Sbjct: 437 TFSLEKLPQDANQDTIGFFIAKFSK 461


>gi|321456480|gb|EFX67587.1| hypothetical protein DAPPUDRAFT_63836 [Daphnia pulex]
          Length = 449

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 37/250 (14%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
           ++Q+  + +        ++  VLDLCAAPGGKT  +   + +   V ALD S  ++++++
Sbjct: 203 FLQNLPSVLCGHALNPQSHHLVLDLCAAPGGKTTHIGSLMENKGSVIALDKSASKIKQIQ 262

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-------------------------FDAVLVDAP 315
            N ++L L        D+   C  +                          FD +L+DAP
Sbjct: 263 ENSEKLGLTNITAFVQDSTTACIMEKPEHLQEYETTAVASLPTSPPFLPNSFDRILLDAP 322

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS+ G   + P +       ++   A  Q+KL L     ++PGG +V+S C+ +  ++EE
Sbjct: 323 CSALG---QRPQLYNPIRLKEVQSFARLQKKLFLTAAQLLRPGGRMVYSTCTYNIAENEE 379

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RI-TPDMLEKIDGVSSGMD 431
           ++   L   P  + +   N    K       L+ E  I   R  +P+    +D  S    
Sbjct: 380 IIDWALGLFP-SLRVTNFNIQIGKPGYRIGRLTEEDCIAMQRFGSPNESVSMDENSD-TI 437

Query: 432 GFFAVALRRL 441
           GFF   L ++
Sbjct: 438 GFFICCLEKI 447


>gi|67516951|ref|XP_658361.1| hypothetical protein AN0757.2 [Aspergillus nidulans FGSC A4]
 gi|40746243|gb|EAA65399.1| hypothetical protein AN0757.2 [Aspergillus nidulans FGSC A4]
          Length = 996

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 115/394 (29%), Gaps = 99/394 (25%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
              + +ERL+N Y  E      +         +    D   W+      ++         
Sbjct: 106 HALFVQERLKNHYIPEITAVQYEGNNVEPPRPVEWYPDRLAWSMTTPKQVIRRFAPFASF 165

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--- 264
               +        G    Q+  + IP  L      ++VLD+CAAPG K+AQL+       
Sbjct: 166 QKFLVAET---DVGNISRQEVVSMIPPLLMDLRPGMTVLDMCAAPGSKSAQLMEMIHAGE 222

Query: 265 ----------------------------------KVTALDVSKRRLEKLRCNLDRLHLYA 290
                                              + A D   +R   L   + RL    
Sbjct: 223 EEAMLEVAKKAKEGTIGPEPAGPEGLNDDGRTTGLLIANDSDHKRAHMLIHQMKRLSSPN 282

Query: 291 EDIIEMDAFDYCPKK-----------------LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
             +   DA  Y   +                  FD +L D PC+  GT R++  V     
Sbjct: 283 LIVTNHDATMYPSIRLPSRPSEDGKPTPNRYLKFDRILADVPCTGDGTARKNYGVWRDWT 342

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
             +       Q ++L++ +  +K GG VV+S CS++  ++E VV   +       ++  +
Sbjct: 343 PQNGNGLHMTQVRILVRALQMLKVGGRVVYSTCSMNPIENEAVVASAIERCGGLEKVKII 402

Query: 394 N-----SAYWKSIDMAMALSPEGWIRIT--------------------------P----- 417
           +         +   +      +   R                            P     
Sbjct: 403 DCSNELPGLKRVNGLRSWKVADRENRFWSSWQEVEEHRAQSGIAGLGRLSEGMFPPITDM 462

Query: 418 --DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445
             +   +I        GFF   L +      +P+
Sbjct: 463 PLERCMRIYPHLQDTGGFFITVLEKQSEIRAKPE 496


>gi|259488965|tpe|CBF88845.1| TPA: methyltransferase (Ncl1), putative (AFU_orthologue;
           AFUA_1G14180) [Aspergillus nidulans FGSC A4]
          Length = 990

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 115/394 (29%), Gaps = 99/394 (25%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
              + +ERL+N Y  E      +         +    D   W+      ++         
Sbjct: 100 HALFVQERLKNHYIPEITAVQYEGNNVEPPRPVEWYPDRLAWSMTTPKQVIRRFAPFASF 159

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--- 264
               +        G    Q+  + IP  L      ++VLD+CAAPG K+AQL+       
Sbjct: 160 QKFLVAET---DVGNISRQEVVSMIPPLLMDLRPGMTVLDMCAAPGSKSAQLMEMIHAGE 216

Query: 265 ----------------------------------KVTALDVSKRRLEKLRCNLDRLHLYA 290
                                              + A D   +R   L   + RL    
Sbjct: 217 EEAMLEVAKKAKEGTIGPEPAGPEGLNDDGRTTGLLIANDSDHKRAHMLIHQMKRLSSPN 276

Query: 291 EDIIEMDAFDYCPKK-----------------LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
             +   DA  Y   +                  FD +L D PC+  GT R++  V     
Sbjct: 277 LIVTNHDATMYPSIRLPSRPSEDGKPTPNRYLKFDRILADVPCTGDGTARKNYGVWRDWT 336

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
             +       Q ++L++ +  +K GG VV+S CS++  ++E VV   +       ++  +
Sbjct: 337 PQNGNGLHMTQVRILVRALQMLKVGGRVVYSTCSMNPIENEAVVASAIERCGGLEKVKII 396

Query: 394 N-----SAYWKSIDMAMALSPEGWIRIT--------------------------P----- 417
           +         +   +      +   R                            P     
Sbjct: 397 DCSNELPGLKRVNGLRSWKVADRENRFWSSWQEVEEHRAQSGIAGLGRLSEGMFPPITDM 456

Query: 418 --DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445
             +   +I        GFF   L +      +P+
Sbjct: 457 PLERCMRIYPHLQDTGGFFITVLEKQSEIRAKPE 490


>gi|115476970|ref|NP_001062081.1| Os08g0484400 [Oryza sativa Japonica Group]
 gi|42409394|dbj|BAD10707.1| proliferating-cell nucleolar antigen-like protein [Oryza sativa
           Japonica Group]
 gi|113624050|dbj|BAF23995.1| Os08g0484400 [Oryza sativa Japonica Group]
 gi|215686794|dbj|BAG89644.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 812

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 37/233 (15%)

Query: 213 VSLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA 264
            +L  F E +           Q+A + +P        +  VLD+CAAPG KT QL+    
Sbjct: 171 QALESFHEFLKHESEVGNITRQEAVSMVPPLFLNIQPDHHVLDMCAAPGSKTFQLLEMIH 230

Query: 265 KV-----------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------- 306
           +             A DV+ +R + L  N+ R+      +   +A ++   ++       
Sbjct: 231 QSKEPGLLPRALVVANDVNAQRCDLLIHNMKRMCTANLIVTNHEAQNFPDCRIANDLSEI 290

Query: 307 -----------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                      FD VL D PCS  GTIR+  D+    ++         Q  + ++GI+ +
Sbjct: 291 YKKDCKPQRLEFDRVLCDVPCSGDGTIRKGHDMWRKWNSGMGNGLHLLQVDISMRGIALL 350

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
           K GG +V+S CS++  ++E V+ ++LR S   VEL+ +++   + +      +
Sbjct: 351 KVGGRMVYSTCSMNPVENEAVIAELLRRSGNSVELLDVSNELPELVHRPGLST 403


>gi|302841478|ref|XP_002952284.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f.
           nagariensis]
 gi|300262549|gb|EFJ46755.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f.
           nagariensis]
          Length = 272

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 93/248 (37%), Gaps = 24/248 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVT 267
            +   P    G   +Q  ++ +P +        +V+D CAAPG KT     ++ +  +V 
Sbjct: 13  DLHDHPLVTRGSVVLQSKASCMPARALAPEPGWTVVDCCAAPGNKTTHLAAIMKNQGRVL 72

Query: 268 ALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTI 322
           A D   RRL +L+ N   +      +    D     P          VL+D  CS +GT 
Sbjct: 73  AFDKDPRRLARLKANASLVGATSCVEARLADFLSLDPTAPEFKEVRGVLLDPSCSGSGTT 132

Query: 323 RRHPDVL---WTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVV 377
               D L    T     + + A FQ   L   + F  ++    +V+S CS+  +++E VV
Sbjct: 133 FTRMDHLLPSHTGPAARVAQLARFQSAALSHALRFPSLE---RLVYSTCSVHVEENEAVV 189

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
              L+ +      +      W    + +    E  IR         D    G DGFF   
Sbjct: 190 AGALQQAAEAGLELADPFPSWHRRGLPLFPGAEKLIRT--------DAYLDGTDGFFVAL 241

Query: 438 LRRLIQPK 445
            +R    +
Sbjct: 242 FQRRQTQE 249


>gi|261601979|gb|ACX91582.1| Fmu (Sun) domain protein [Sulfolobus solfataricus 98/2]
          Length = 350

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 42/235 (17%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269
           +  LP    G+ +VQ  ++     L     N  ++D+ A  GGK   +     +V     
Sbjct: 152 LADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGGKLTHIYQLEPRVKLIGF 211

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326
           D +++++EKLR   +++ +   +I + D+            D V++D PCS+ G     P
Sbjct: 212 DHTEKKVEKLRDLANKMGMR-IEIYKADSRYLYEDYKIGDVDKVVIDPPCSALGI---RP 267

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   +   DI+    +Q++ L      +K  G+V++S C++   ++E+V+         
Sbjct: 268 KLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 320

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                S E  IR  P +          + GFF   L + 
Sbjct: 321 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 349


>gi|15897306|ref|NP_341911.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2]
 gi|284174558|ref|ZP_06388527.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus 98/2]
 gi|13813517|gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2]
          Length = 327

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 42/235 (17%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269
           +  LP    G+ +VQ  ++     L     N  ++D+ A  GGK   +     +V     
Sbjct: 129 LADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGGKLTHIYQLEPRVKLIGF 188

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326
           D +++++EKLR   +++ +   +I + D+            D V++D PCS+ G     P
Sbjct: 189 DHTEKKVEKLRDLANKMGMR-IEIYKADSRYLYEDYKIGDVDKVVIDPPCSALGI---RP 244

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   +   DI+    +Q++ L      +K  G+V++S C++   ++E+V+         
Sbjct: 245 KLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 297

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                S E  IR  P +          + GFF   L + 
Sbjct: 298 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 326


>gi|238597444|ref|XP_002394329.1| hypothetical protein MPER_05799 [Moniliophthora perniciosa FA553]
 gi|215463187|gb|EEB95259.1| hypothetical protein MPER_05799 [Moniliophthora perniciosa FA553]
          Length = 188

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 28/156 (17%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L D PCS  GT+R++  +      +D       Q ++L + +  +K  G +V+S C
Sbjct: 27  FDRILCDVPCSGDGTLRKNLGIWKKWQPNDGNGLHGLQLRILQRAMKLLKADGRIVYSTC 86

Query: 367 SLDKQDSE-------------------EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           SL+  ++E                   E     L + P       L   +W   ++   L
Sbjct: 87  SLNPVENEAVVAAALNANTDKAVKATYETYSAFLEADPQAASNTKLTEGHWPPQNVEE-L 145

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           + E  +RI P + +          GFF   L R  +
Sbjct: 146 NLERCMRIYPHLQDSG--------GFFVAVLERKQK 173


>gi|266623332|ref|ZP_06116267.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479]
 gi|288864887|gb|EFC97185.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479]
          Length = 255

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 15/158 (9%)

Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             +    +     D         FD +L+DAPCS  G  R+  D++ + +       +  
Sbjct: 14  WGIANICVTSETPDKLAGVFGPWFDKILIDAPCSGEGMFRKDEDMVKSYEEHGPEYYSRI 73

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q+++  Q +  + PGG++++S C+  + + EE++  +L      +ELV L          
Sbjct: 74  QKEITDQAVRMLAPGGLLLYSTCTFSRCEDEEIICHILNRH-EEMELVKLPLFE----GA 128

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  +   G +R+ P  ++          G F   L + 
Sbjct: 129 SDGIGLNGCLRLFPHKIKGE--------GHFMALLHKK 158


>gi|67477207|ref|XP_654109.1| Putative methyltransferase NSUN5 [Entamoeba histolytica HM-1:IMSS]
 gi|56471131|gb|EAL48723.1| Putative methyltransferase NSUN5 [Entamoeba histolytica HM-1:IMSS]
          Length = 372

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 85/223 (38%), Gaps = 17/223 (7%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282
           QD  +  P  +     N   +D CAAPG KT     ++ +   + A D   +R E LR  
Sbjct: 160 QDKPSCFPAFILNPPENSICIDACAAPGNKTTHLATIMNNTGIIYAFDKDIKRAELLRTT 219

Query: 283 LDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338
           +        ++I  D      +         +L D  CS +G + R       RD   + 
Sbjct: 220 VKNYQATNIEVICGDFLQSDIEDIRFENVTHILCDPSCSGSGILERQL-TKEKRDPARLR 278

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             + FQ K++   + F K    + +S CS++ +++E VV+ VL  +P             
Sbjct: 279 MLSSFQTKIVSHAMKF-KNVQCITYSTCSVNNEENECVVKAVLDENPSFRLEPAFPQWQR 337

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + I +  +   E  IR+ P            M GFF     R 
Sbjct: 338 RGIAIDDSYPYENCIRVDPH--------EDHMTGFFVALFVRK 372


>gi|313232302|emb|CBY09411.1| unnamed protein product [Oikopleura dioica]
          Length = 1215

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 107/309 (34%), Gaps = 43/309 (13%)

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA-----HKLNAVMLPTGGI 203
            E   +           L + +  +      L    +   W       +L      +G  
Sbjct: 82  KELIAQMETTHLSNIESLVLDNGKVVKPAEPLPWYPNRLAWKTNLSRQELRKFPQLSGFH 141

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-- 261
           +                G    Q+  + IP  L    ++ +VLD+CAAPG KT+Q+I   
Sbjct: 142 QWMIAEG--------ESGHVTRQELVSMIPTLLLDIKSHCAVLDMCAAPGSKTSQIIEAL 193

Query: 262 ---------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------- 302
                          A D + RR   L     RL+     ++  DA              
Sbjct: 194 HADAKDGSLPEGFCVANDANNRRCYMLVHQAKRLNSPCCMVVNHDAQGMPNMKVKKDSGE 253

Query: 303 --PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 +D +L D PCS  GT+R++PDV  +   ++ +     Q ++  +G+  +K GG 
Sbjct: 254 GFEWLQYDRILADVPCSGDGTMRKNPDVWTSWRPNNTLNLHAMQFRIAQRGLELLKVGGK 313

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S CS+   + E VV  +++     + LV ++            L  E  +   P   
Sbjct: 314 MVYSTCSMSPIEDEAVVSALIKKCEGSIRLVSIDGMLP-------GLKYEKGVSTWPVYF 366

Query: 421 EKIDGVSSG 429
           +        
Sbjct: 367 DGKFHTEPN 375


>gi|42567548|ref|NP_195710.3| NOL1/NOP2/sun family protein [Arabidopsis thaliana]
 gi|332661751|gb|AEE87151.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana]
          Length = 783

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 101/305 (33%), Gaps = 86/305 (28%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271
              Q++ + +P        +  VLD+CAAPG KT QL+                V A DV
Sbjct: 160 MTRQESVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHESSEPGSLPNGMVVANDV 219

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-------------------FDAVLV 312
             +R   L     R       +   +   +                        FD VL 
Sbjct: 220 DYKRSNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASETNPHPIDQLLFDRVLC 279

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  GT+R+ PD+    ++         Q  L ++G+S +K GG +V+S CS++  +
Sbjct: 280 DVPCSGDGTLRKAPDIWRRWNSGSGNGLHSLQVVLAMRGLSLLKVGGRMVYSTCSMNPIE 339

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA--------------------MALSPEGW 412
            E VV ++LR     VELV ++    + I                            +G 
Sbjct: 340 DEAVVAEILRRCGCSVELVDVSDKLPELIRRPGLTKWKVHDRGGWYRSYKDVPKSQRDGV 399

Query: 413 IR-ITP-----------------------------------DMLEKIDGVSSGMDGFFAV 436
           +R + P                                   ++  +I        GFF  
Sbjct: 400 LRSMFPSGKSDKDSSGGKNSYEEMASISSDESAEEVCDLPLELCMRILPHDQNTGGFFIA 459

Query: 437 ALRRL 441
            L ++
Sbjct: 460 VLHKV 464


>gi|291459196|ref|ZP_06598586.1| NOL1/NOP2/sun family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418450|gb|EFE92169.1| NOL1/NOP2/sun family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 474

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 106/285 (37%), Gaps = 35/285 (12%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
           E   ++ +  +S   +      D   +  K           RL E        P    G+
Sbjct: 50  EDARSVYETLLSDWGLRALPGSDAALFEGKEYFREFILDERRLLERSIRPGLHPYHEAGL 109

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLE 277
           +++Q+ SA   +          VLDLCA+PGGK+ Q         G  + + +    R  
Sbjct: 110 YYLQEPSAMQALPALSVRPFDRVLDLCASPGGKSGQAADRLSLLEGGILISNEYVPERAR 169

Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N++RL +    ++  D+        + F  +LVDAPCS  G  R+  + +     +
Sbjct: 170 TLSSNIERLGIENAAVLNEDSARLSRHFPEYFSRILVDAPCSGEGMFRKDENAISEWSPE 229

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
           ++      QR++L   +S + PGG++ +S C+ ++ ++E     +L   P          
Sbjct: 230 NVEHCISRQREILRNAVSMLSPGGLLCYSTCTFERGENEGQRDFLLSGYP---------- 279

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                           ++R+      +        +G +    RR
Sbjct: 280 ----------------FLRL--GFERRTYPQRGPGEGHYIAIFRR 306


>gi|159041954|ref|YP_001541206.1| Fmu (Sun) domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920789|gb|ABW02216.1| Fmu (Sun) domain protein [Caldivirga maquilingensis IC-167]
          Length = 426

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 168/445 (37%), Gaps = 52/445 (11%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ ++  +  + +S+               L    ++   A V+  +R    +  +   +
Sbjct: 14  AADVMYIIEDRLVSMDKAFHYARLRHR---LKAPLRVYYNA-VSDVVRNYAYLSFMAKQL 69

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           L SS  +       LL                  +    +  R +          +  R 
Sbjct: 70  LGSSSRKAIAKTWLLL----------------NTNDHYSRRLRKRVRGRVEG---AEARL 110

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVL-AISDACISPLYIDLT-VKFDIET 188
              +  + L  ++     P +  E L    G   +   +S       ++ +  +K D++ 
Sbjct: 111 SEVKDNDPLTYLSIKYSFPRFIVEELSRGMGLSELEDYLSSLNRRVTWLRVNTLKVDLDK 170

Query: 189 WAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
               L    +     RL             +  L  F +G    QD ++++ V       
Sbjct: 171 AIRLLEDEGVEFTQSRLYPFMLLVKGYRRPMGYLRLFKDGAVVPQDLASALVVLNLMPEP 230

Query: 242 NLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEM 296
              ++D CAAPG KT+ ++    + A+V A+DVSK RL K+R  L R+ +      I+  
Sbjct: 231 GDVIIDACAAPGMKTSLIMQLTDNKAEVIAIDVSKNRLSKMRSILRRMGVDDSRVHIMRS 290

Query: 297 DAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR--DTDDIVKSACFQRKLLLQGIS 353
           D+          + VL+DAPC+S+G + + P +      +   + + +  Q  +LL  I+
Sbjct: 291 DSSRLRLTGVNVNKVLIDAPCTSSGAVSKDPGIKLILASNPGLVKRQSLVQSSILLNLIN 350

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K    +V++ CS+  ++ EEV++++  +S   V LV  +     +  +   +S     
Sbjct: 351 QLK-DASIVYATCSILPEEGEEVIERI--NSSSSVSLVKPSVGDLSNGYVNYPVSSVVG- 406

Query: 414 RITPDMLEKIDGVSSGMDGFFAVAL 438
           R+ P +           +GFF   L
Sbjct: 407 RVMPHI--------HNAEGFFISKL 423


>gi|328786980|ref|XP_393743.4| PREDICTED: putative methyltransferase NSUN5-like [Apis mellifera]
          Length = 607

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 164/450 (36%), Gaps = 57/450 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF- 69
           ++ ++  V  K  SL  L+  +   +         +  + ++   TL+   +ID +++  
Sbjct: 18  AAKIIQEVREKGGSLKSLIYNQRHPN---------KSAIYSLCVKTLQKEGQIDNLINKT 68

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILY------LDVADYAVVDLAVEQAKRDKENRHFAKL 123
            L+++ PR    L ++L   + ++L+       D     ++      A   K        
Sbjct: 69  NLLTNEPRFDAWLAKIL---ITELLWGKNALKTDCKPIKII-----LAYEQKLREEL--- 117

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
            N  +   S     +               ++  +++ +E    I        ++     
Sbjct: 118 NNIGVDAFSTSPETVKNARYVRINTLLVTLKKGISYFQEEGWSLIPKCSNYIQHL----- 172

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESI-VSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
            +      K N +        L   P+++    PG+  G   +QD ++ +P  L      
Sbjct: 173 -NAVKNLKKPNFIQDFHIPEILVFPPDTVFYDHPGYQNGEIILQDKASCLPSYLLNPEPG 231

Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297
             VLD+CAAPG KT+    ++ +  K+ A++  + R + L   +   +    + I  D  
Sbjct: 232 SIVLDMCAAPGMKTSHLAAILTNTGKIYAVEKDEHRYKTLCKQIKLTNASCVETINKDSL 291

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGI---S 353
             +       + +LVD  CS +G + R       + D   + +   FQ  +L   +    
Sbjct: 292 TLETNEYSKVEYILVDPSCSGSGMLDRQIVYGKEKGDPQRLKQLQAFQVFVLRHALLNFP 351

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS---AYWKSIDMAMALSPE 410
            VK    VV+S CS   +++EEVV ++L +     ELVP+       W +         +
Sbjct: 352 NVK---RVVYSTCSTHCEENEEVVDEILENIQNAYELVPVKKLLNEEWLNFSSKKYKCSD 408

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +    D+    D        FF     R
Sbjct: 409 KCLYAISDVDMCND--------FFVAVFER 430


>gi|149436867|ref|XP_001514526.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5,
           partial [Ornithorhynchus anatinus]
          Length = 433

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 145/402 (36%), Gaps = 24/402 (5%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +D+++D   L+ +  + +  L ++L   V  +L             
Sbjct: 5   LYALVCETQRYSAVLDSIIDSAGLLKAEKKLRPHLAKVL---VYDLLLGRGLRGGGRWKP 61

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
           V    R +     A+L        + + +E        S +P + +         + V  
Sbjct: 62  VLARHRARLQAELARLKVRRRVSRNEDLLEPASGARPASKVPRYVRVNTLKTCPGDAVDY 121

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
                 S      +   +++    K   +      + +      +   P +  G   +QD
Sbjct: 122 FKRQGFSYQG-RASSPEELQALEGKRFFLDPLLPELLVFPAGTDLHENPFYRAGHLILQD 180

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLD 284
            ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+   RL  +   L 
Sbjct: 181 KASCLPATLLAPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAGRLASMATLLT 240

Query: 285 RLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVL--WTRDTDDIV 338
           R  +   ++   D     P          +L+D  CS +G + R  +         + + 
Sbjct: 241 RAGVSCCELANEDFLSVPPTDPRYGRVQYILLDPSCSGSGMVSRRLEEPEADGPSPERLR 300

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             A FQ K L   +SF      +V+S CS+ ++++E+VV   L+ S     L     A W
Sbjct: 301 ALAAFQLKALRHALSFPALQ-RLVYSTCSVCQEENEDVVWAALQQSAGTFRLAEALPA-W 358

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +         IR +P++            GFF   L R
Sbjct: 359 PHRGLDTFPDAARCIRASPELTL--------TGGFFVAVLER 392


>gi|282879251|ref|ZP_06288001.1| NOL1/NOP2/sun family protein [Prevotella buccalis ATCC 35310]
 gi|281298644|gb|EFA91063.1| NOL1/NOP2/sun family protein [Prevotella buccalis ATCC 35310]
          Length = 539

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 109/341 (31%), Gaps = 24/341 (7%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--YID 179
              +        +    L        +PE F+       G      +  A        I 
Sbjct: 20  GRNSHAFSCKETKFFLHLHETNKPMHLPEAFETYTRTLMGNHLYDDLVQALQDEPAACIR 79

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF-- 237
           L  +          +  +             +    P    G ++VQ+ S+     +   
Sbjct: 80  LNRQKCPSAQVAVPHVRVPWCDQGYRLACRPAFTFDPLLHTGAYYVQEPSSMFLSAVLRQ 139

Query: 238 GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                + +LDLCAAPGGK+         G+ +   +  + R + L  N+ +       + 
Sbjct: 140 YVREPVKMLDLCAAPGGKSTLARSELPEGSVLMCNEPVRNRAQVLAENVQKWGHPDVIVT 199

Query: 295 EMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                DY      FD +L DAPCS  G  R++ + +      ++   A  QR ++     
Sbjct: 200 NNYPADYRKAGLRFDVILCDAPCSGEGMFRKNSNAIDEWSEQNVENCARLQRDIVADAWE 259

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS----- 408
            ++ GG++++S C+ + +++EE V  +          +   + +  +       +     
Sbjct: 260 CLEAGGLMIYSTCTFNAKENEENVAWICSELGAKTLSIDTETHWVIAPTPLHLETQGTSP 319

Query: 409 ---------PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    P    R  P             +G F   LR+
Sbjct: 320 IDGSSHLAEPLHVYRFIPGYHNAQGKQMG--EGLFMAVLRK 358


>gi|303237047|ref|ZP_07323617.1| NOL1/NOP2/sun family protein [Prevotella disiens FB035-09AN]
 gi|302482434|gb|EFL45459.1| NOL1/NOP2/sun family protein [Prevotella disiens FB035-09AN]
          Length = 453

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 108/308 (35%), Gaps = 23/308 (7%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI----ETWAHKLNAVMLPTGGI 203
           +P+ F    +  +G+ER          P  + + +         T    L    +P    
Sbjct: 19  LPKAFVAYTKELFGEERFNRFLMGLGQPSPVSIRLNPFKLPANVTINEALKPTQIPWCKE 78

Query: 204 RLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV--LDLCAAPGGKTAQLI 260
                        P    G ++VQ+AS+     +     +  V  LDLCAAPGGKT    
Sbjct: 79  GFYLNERPNFTFDPLIHAGAYYVQEASSMFLAHVLRQFVHFPVALLDLCAAPGGKTTCAR 138

Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPC 316
               S + V + +   +R + L  N+ +       +      +Y   K  FD ++ D PC
Sbjct: 139 TAIPSESIVFSNEPMGKRAQILAENVQKFGHPDVVVTNNYPIEYKKTKLKFDVIVADVPC 198

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G  R+    +      ++      QR ++      +  GG++++S C+ +  ++EE 
Sbjct: 199 SGEGMFRKDEQAMAEWSEKNVANCWQLQRSIVADIWDNLNSGGLLIYSTCTFNAHENEEN 258

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW----IRITPDMLEKIDGVSSGMDG 432
           +  +L      +  V +   +     +      +       R  P   +          G
Sbjct: 259 IAWILNEYNAELLEVKIEKDWNIMGSLINNPLKDKDSFPVYRFIPGFTKGE--------G 310

Query: 433 FFAVALRR 440
            F   +++
Sbjct: 311 LFMAVIKK 318


>gi|238597450|ref|XP_002394331.1| hypothetical protein MPER_05797 [Moniliophthora perniciosa FA553]
 gi|215463191|gb|EEB95261.1| hypothetical protein MPER_05797 [Moniliophthora perniciosa FA553]
          Length = 207

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 17/150 (11%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPCS TG I +   V   +   D    A  Q++L+L  +  V    K GG VV
Sbjct: 5   FDRVLLDAPCSGTGVISKDSSVKVNKSERDFTLLAHLQKQLILCALDSVSPDSKTGGYVV 64

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--ML 420
           +S CS+   ++E VV   LR  P  V+LV     + +        +        P   + 
Sbjct: 65  YSTCSVTVDENEAVVDYALRKRPN-VKLVDTGIGFGR-----EGYTKYRGKVFNPSVKLT 118

Query: 421 EKIDGVSSGMDGFFAVALR-----RLIQPK 445
            +       MDGF+    +     ++ + +
Sbjct: 119 RRFYPHVHNMDGFYVAKFKVEKRSKMTKEE 148


>gi|302348820|ref|YP_003816458.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
           345-15]
 gi|302329232|gb|ADL19427.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
           345-15]
          Length = 382

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 31/237 (13%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTA 268
           +  LPGF EG+ + Q   +   V +       +++D  AAPGGKT+   QL    +++ A
Sbjct: 166 VRELPGFNEGLIYSQSLPSMWAVAIASPSPGETIIDFNAAPGGKTSLAAQLAGRKSRIIA 225

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRR 324
           +D    + EKLR NL RL     +++  D+         +   D VL+D PC++ G I +
Sbjct: 226 IDR-ASKAEKLRDNLIRLGADWVNVVGGDSRRASSLLNIEGKADLVLIDPPCTNLGVIPK 284

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
              +  T+   D V  + +QR+ + +    +KPGG +V+S C+L   ++E  V   +   
Sbjct: 285 ---LYDTKRLADAVVLSRYQRQFISEAWKALKPGGRLVYSTCTLTDVENEANVLFAME-- 339

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   L     K   M    S  G  +R +P           G  GFF   + +
Sbjct: 340 --------LGFEVTKPYPMPREASYNGLGLRFSP---------EDGHPGFFISLMVK 379


>gi|218201332|gb|EEC83759.1| hypothetical protein OsI_29649 [Oryza sativa Indica Group]
 gi|222640753|gb|EEE68885.1| hypothetical protein OsJ_27712 [Oryza sativa Japonica Group]
          Length = 790

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 37/233 (15%)

Query: 213 VSLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA 264
            +L  F E +           Q+A + +P        +  VLD+CAAPG KT QL+    
Sbjct: 171 QALESFHEFLKHESEVGNITRQEAVSMVPPLFLNIQPDHHVLDMCAAPGSKTFQLLEMIH 230

Query: 265 KV-----------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------- 306
           +             A DV+ +R + L  N+ R+      +   +A ++   ++       
Sbjct: 231 QSKEPGLLPRALVVANDVNAQRCDLLIHNMKRMCTANLIVTNHEAQNFPDCRIANDLSEI 290

Query: 307 -----------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                      FD VL D PCS  GTIR+  D+    ++         Q  + ++GI+ +
Sbjct: 291 YKKDCKPQRLEFDRVLCDVPCSGDGTIRKGHDMWRKWNSGMGNGLHLLQVDISMRGIALL 350

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
           K GG +V+S CS++  ++E V+ ++LR S   VEL+ +++   + +      +
Sbjct: 351 KVGGRMVYSTCSMNPVENEAVIAELLRRSGNSVELLDVSNELPELVHRPGLST 403


>gi|255073107|ref|XP_002500228.1| predicted protein [Micromonas sp. RCC299]
 gi|226515490|gb|ACO61486.1| predicted protein [Micromonas sp. RCC299]
          Length = 490

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 100/292 (34%), Gaps = 75/292 (25%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------------KV 266
           G    Q+A + IP  L        VLD+CAAPG KT QL+                   V
Sbjct: 204 GAITRQEAVSMIPPLLLDVKPQHRVLDMCAAPGSKTFQLLEMLHARAEERDEGSLPTGVV 263

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------------PKKLFDAVLVD 313
            A D S +R   L     R +  A  +    A  +                  FD +L D
Sbjct: 264 VANDASLQRANLLTHQTKRSNSPALIVTNHQAQKFPLLYPKSGEGDATREPYRFDRILAD 323

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  GT+R+ PD+         V     Q  +       +K GG +V+S CSL+  + 
Sbjct: 324 VPCSGDGTLRKSPDLWKKWSPASGVDLHTLQLDIASHAARLLKVGGRLVYSTCSLNPLED 383

Query: 374 EEVVQKVLRSSPIPVELVPLNSA------------------------------------- 396
           E VV  +L+ +   + LV ++                                       
Sbjct: 384 EAVVAALLKRAKGALRLVDVSGELEGLKRKPGMYAWEVGDAFGWHERFDGVGRRQRNVAV 443

Query: 397 --YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ-PK 445
             +      A  ++ E  +RI P +            GFF VA+ ++ + P+
Sbjct: 444 TMWPPGSSKAREMNLERCVRIMPHL--------DDTGGFFIVAIDKVGELPE 487


>gi|317154627|ref|YP_004122675.1| Fmu (Sun) domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944878|gb|ADU63929.1| Fmu (Sun) domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 427

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 15/264 (5%)

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
            V+  +                 RL   P ++        G+ ++QD S+ +P  L    
Sbjct: 19  HVEALLAAQGFAFEPEPFYPLARRLIREPFALGDSLAARFGLIYIQDRSSMLPPLLLDPE 78

Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
              SVLD+C+APG KT   ++L+     V A + S  RL  LR NL R         +  
Sbjct: 79  AGASVLDMCSAPGSKTGLLSRLVGREGFVFASEPSADRLGTLRANLRRTGSVNTATAKAK 138

Query: 298 AFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           A D   P   +D + +D PCS  GT+ ++P V+              Q+ LL +  + + 
Sbjct: 139 AQDLPFPDGSWDCIQLDPPCSGWGTVDKNPKVMELWGEGKTGPLVALQKTLLTKAAALLA 198

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           P G V++S C+ + +++E  V   L +  + + L PL +              +G +R+ 
Sbjct: 199 PDGSVLYSTCTTNVEENEAQVAWALDT--LDLALEPLAAPPGFIFGQPELPGMDGVLRV- 255

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
                      S   GFF    R+
Sbjct: 256 --------AADSEGQGFFLARFRK 271


>gi|289741935|gb|ADD19715.1| proliferation-associated nucleolar protein NOL1 [Glossina morsitans
           morsitans]
          Length = 400

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 134/405 (33%), Gaps = 41/405 (10%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL------DVADYAV 103
           +A++         IDA ++      L       ++L    V +++Y       D      
Sbjct: 15  QALLTHYTDNQRAIDAAIEKC--QILEENPRLSRELCITLVTELIYHRKDLKGDSKPVQT 72

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
           V    ++        + AK  ++  R V      +    A   +   W K+    F   +
Sbjct: 73  VRAYRKRIMEALGGENLAKKKDTKPRYVRINTHIVSIADAHTVLAENWCKKDCPPFENYD 132

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE-GV 222
             L   +                    ++  A M     +      +   +   + E   
Sbjct: 133 DFLKAVETLEE----------------NEYMADMHVDDLLIFHSKQKYFWATHEYTESKK 176

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
           + +QD +  +   +        +LD+CAAPG KT      + +   + A++    R   L
Sbjct: 177 FMLQDKATCLATIILNPPIGSIILDMCAAPGMKTIHLSNFVKNQGTIYAIEKDAERYRLL 236

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           R    +        IE D     P++  D   +L+D PCS +G   R        D   +
Sbjct: 237 RSMTKKAKCRNIKPIEADVLTVTPEQCPDVEYILLDPPCSGSGMQNRMCLNPEVNDAQRL 296

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            K    Q KLL   ++F  VK    +V+S CS+ ++++E+VV+K L  +P    L    +
Sbjct: 297 QKLGGLQIKLLNHAMNFPQVK---RIVYSTCSIHREENEDVVKKCLHLNPTFKLLSAKKA 353

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              K  ++       G                    G F     +
Sbjct: 354 LRNKWCNLGDRDYDFG------KKCLYSRPEKDLTIGMFIAIFEK 392


>gi|325191085|emb|CCA25571.1| tRNA (cytosine5)methyltransferase NSUN2 putative [Albugo laibachii
           Nc14]
          Length = 702

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 97/282 (34%), Gaps = 71/282 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272
              Q+A + IP  L        VLD+CAAPG KT+Q            +    V A D  
Sbjct: 142 ITRQEAVSMIPPLLLQVEPEHRVLDMCAAPGSKTSQILESLHAGTSDAIPSGLVVANDCD 201

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRH 325
            +R   L     RL   A  +   +A ++         +  FD VL D PCS  GT+R++
Sbjct: 202 LKRAFLLVHQSKRLPSPALLVTCGEAQNFPLLSDCPSSQGFFDRVLCDVPCSGDGTLRKN 261

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           P +    D  + +     Q  +  +G   +K  G++ +S CS +  ++E VV  +L  S 
Sbjct: 262 PTIWKNWDPKNGIHLHPLQLAIAKRGAQVLKVNGLMCYSTCSFNPIENEAVVASLLLWSR 321

Query: 386 IPVELVPLNSA----------------------------------------------YWK 399
             +ELV ++                                                +  
Sbjct: 322 GALELVDVSEKIAKLRRRPGLKTWKVFDSDMIECTSVQKETDSDKSGRKKEKLMETMFPP 381

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           S D    L     IR  P              GFF   L+++
Sbjct: 382 SQDEMEQLGMAKCIRCLPHD--------ENTGGFFICLLKKV 415


>gi|300726778|ref|ZP_07060208.1| NOL1/NOP2/sun family protein [Prevotella bryantii B14]
 gi|299775891|gb|EFI72471.1| NOL1/NOP2/sun family protein [Prevotella bryantii B14]
          Length = 466

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 111/306 (36%), Gaps = 22/306 (7%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPTG 201
             +P+ F     +  G++    +           + +      +       L+  +    
Sbjct: 1   MNLPKEFVSYTRDLMGEKLFSTLEKGLKQDPVTSIRINPYKLKERRFQIANLDESVAWCK 60

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQ 258
                +   +    P    GV++VQ+AS+               + +LDLCAAPGGKT  
Sbjct: 61  HGMYLKSRPNFTFDPLLHAGVYYVQEASSMFLEHVLRQILDETPILMLDLCAAPGGKTTV 120

Query: 259 LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314
                  G+ + A +  + R   L  N+ +       +      DY     LFD ++ D 
Sbjct: 121 ARSILPEGSLLFANEPIRTRSNILAENIQKFGHPDVIVTNNYPKDYKKTDLLFDIIVADV 180

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  G  R+    +      ++      QR+++    + +K  GI+++S C+ + ++ E
Sbjct: 181 PCSGEGMFRKDQGAIEEWSQKNVENCRNLQREIIQDIWNNLKKDGILIYSTCTFNAKEDE 240

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           E V  ++         V +++ +  +  +   ++     R  P   +          G F
Sbjct: 241 ENVDWIVNELGAEYISVDIDNNWPITPSL---INEHPVYRFIPGKTKGE--------GIF 289

Query: 435 AVALRR 440
              LR+
Sbjct: 290 MAVLRK 295


>gi|47217434|emb|CAG10203.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 337

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 53/284 (18%)

Query: 207 ELPESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260
           ++ E +   P F +    + ++Q+  + +   + G      VLD+CAAPGGKT  +   +
Sbjct: 56  QMVEPLYQSPSFDQILPSLVFLQNLPSVVVGHVLGPRPGERVLDMCAAPGGKTCHMAALM 115

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD-------------YCPKKLF 307
               +V ALD  K ++ ++  N   L L +      ++                 P + F
Sbjct: 116 GDQGEVVALDRIKNKINRILENAQVLQLRSIKAFCFNSTQAVSTDAAPHAEEPPFPPESF 175

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VL+DAPCS  G   + P +  T    +I      QRKL    +  +K GG++V+S C+
Sbjct: 176 DRVLLDAPCSGLG---QRPIMGSTWSLKEICSYQPLQRKLFQAAVQLLKKGGVLVYSTCT 232

Query: 368 LDKQDSEEVVQKVLRSSPI--------------------PVELVPLNSAYWKSIDMAMAL 407
           +   ++EE V   L++ P                          P              L
Sbjct: 233 VTLAENEEQVAWALQTFPCLSLQPQVRRPSQSGTSVIGPSPLCFPQEPHIGAGGMQGAGL 292

Query: 408 SPEGWI---RITPDML------EKIDGVSSGMD--GFFAVALRR 440
           SPE      R  P++              +  D  GFF     +
Sbjct: 293 SPEQLRLLQRFRPELSWDQSRAAASLPHRADTDTIGFFIAKFLK 336


>gi|147811154|emb|CAN70164.1| hypothetical protein VITISV_039256 [Vitis vinifera]
          Length = 906

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 39/322 (12%)

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
               FA    +            ++ I  +   PE      ++ Y + ++          
Sbjct: 42  GWEPFATQNPAFDEYYKATDGGEVEAIRPLPWYPENL--AWQSNYSRMQLRKNQTLERFH 99

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
            ++    +    T    ++ V      +  + L  S+          +++      +P  
Sbjct: 100 EFLKQENEIGNITRQEAVSMVGQLYKFVIFELLVVSLEKFESLGIYSFFII----VVPPL 155

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDVSKRRLEKLRCNLD 284
                 +  VLD+CAAPG KT Q             + G  V A DV  +R   L     
Sbjct: 156 FLDVSPDHFVLDMCAAPGSKTFQLLEIIHRSTKPGTLPGGMVVANDVDVKRCNLLIHQTK 215

Query: 285 RLHLYAEDIIEMDAFDYC----------------------PKKLFDAVLVDAPCSSTGTI 322
           R+      +   +A  +                        + +FD VL D PCS  GT+
Sbjct: 216 RMCTANLIVTNHEAQHFPGCXLNKLSSDSSEIGVVKEQSMSQLMFDRVLCDVPCSGDGTL 275

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R+ PD+    +        C Q ++ ++GIS +K GG +V+S CS++  ++E VV ++LR
Sbjct: 276 RKAPDIWRKWNVGMGNGIHCLQVQIAMRGISLLKVGGRMVYSTCSMNPVENEAVVAEILR 335

Query: 383 SSPIPVELVPLNSAYWKSIDMA 404
                VELV ++    + +   
Sbjct: 336 RCGGSVELVDVSCELPQLVRRP 357


>gi|316975082|gb|EFV58541.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Trichinella spiralis]
          Length = 683

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 61/274 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---------KVTALDVSK 273
              Q+A + IP       ++ S+LD+CA+PG KT QLI              V A D++ 
Sbjct: 175 LSRQEAVSMIPPLFMDIKSHHSILDMCASPGSKTVQLIEMLHADGEALPTGFVIANDLNN 234

Query: 274 RRLEKLRCNLDRLHLYAEDIIEM-------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
           +R   L     R       +I         D F    K  FD +L D PCSS GT+R++ 
Sbjct: 235 KRCYLLVHQSLRRSSSPCCVITNCDASQFPDKFGKLTKLKFDRILCDVPCSSDGTLRKNL 294

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----- 381
           ++      +        QRK++ +G+  +  GG++V+S CS++  + E V+ ++L     
Sbjct: 295 NLWKEWHVNQAYALHRLQRKIVERGLHLLATGGLLVYSTCSMNPAEDEAVITQILIYSQG 354

Query: 382 -----------------------------RSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
                                            +      +       I   +    E  
Sbjct: 355 MSCRIGGCWKSTTRISPFKGLVVCFKVLDAEGNVYASPDEVPDELKSKIHNGLFPPDENV 414

Query: 413 ---IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              +RI P              GFF   LR++ +
Sbjct: 415 AENLRIFPHHQ--------NTGGFFIAVLRKVGE 440


>gi|315608815|ref|ZP_07883791.1| NOL1/NOP2/sun family protein [Prevotella buccae ATCC 33574]
 gi|315249509|gb|EFU29522.1| NOL1/NOP2/sun family protein [Prevotella buccae ATCC 33574]
          Length = 432

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 110/305 (36%), Gaps = 21/305 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPTG 201
             +P+ F++      G      +         + + +           A +  A +    
Sbjct: 1   MNLPKDFEQYTRRLMGDALYDTLCRGLDDVPPVSIRLNPFKCGGAAMAATRGEAGVPWCA 60

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQL 259
                    +    P    G+++VQ+AS+              +  LDLCAAPGGK+   
Sbjct: 61  EGVYLRERPNFTFDPLLHAGLYYVQEASSMFVAHVLRSLVSGPVLALDLCAAPGGKSTCA 120

Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAP 315
           +    +G+ + A +  K R + L  N+ +       +     A     +  FD +L D P
Sbjct: 121 MGALPAGSVLCANEPVKPRAQILAENVQKFGHPDIIVTANFAADYARTRLDFDIILADVP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+    +     D++ +    QR ++      +KPGG++++S C+ + +++EE
Sbjct: 181 CSGEGMFRKDEGAVAEWSADNVERCRRLQRDIVADIWPRLKPGGLLLYSTCTFNARENEE 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
             + +          +P+ +A+  +             R  P              G F 
Sbjct: 241 NAEWIADQLGADFVEIPVEAAWNIT---GSLTDDRPMYRFIPGKTRGE--------GLFM 289

Query: 436 VALRR 440
             LR+
Sbjct: 290 AVLRK 294


>gi|66803617|ref|XP_635647.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
 gi|60463974|gb|EAL62137.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
          Length = 501

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 102/265 (38%), Gaps = 48/265 (18%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA----------------- 257
           L    E   ++Q   +   V          ++D+CAAPGGKT                  
Sbjct: 245 LNSVLEDKMFLQHLPSIYTVYQLEPKLGDKIIDMCAAPGGKTTLIASLIQQFEINNNQNN 304

Query: 258 ----QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--------------F 299
                      ++ ALD +K +++K+     RL L                         
Sbjct: 305 QKYQNNNEIKTEIFALDKNKGKVKKIIDLCKRLSLDKYVTCLAKDSSKLTKENQQDPLDK 364

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD VL+D PCS  G+    P ++ +    D+  S+ FQ+KL+ Q +S +KPGG
Sbjct: 365 IRFQSNSFDKVLLDGPCSGLGS---RPRLIESSSLVDLTNSSEFQKKLIDQAVSLLKPGG 421

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RIT 416
           I+V+S CS++ +++E  V  +L + P  ++L+P      +       L+ +      R  
Sbjct: 422 ILVYSTCSINPEENELNVSYLLNNYP-EMKLIPQIPHISQPGLPNCGLTEQQCKLVSRFD 480

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P           G  GFF     ++
Sbjct: 481 PSDSNI------GTIGFFIAKFTKI 499


>gi|320101269|ref|YP_004176861.1| Fmu (Sun) domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753621|gb|ADV65379.1| Fmu (Sun) domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 380

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 23/238 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVT 267
            +  L  +++G+++ Q   +    ++ G      V+D+ A+PGGKT+ ++        V 
Sbjct: 155 RLSELDIYSQGLFYPQGYPSIGTSRILGPEPGELVVDMNASPGGKTSHIVQLTRGRALVV 214

Query: 268 ALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTI 322
           A D S  ++EKL+  L  L L      +  D+             D VLVD PCS+ G  
Sbjct: 215 AFDRSPGKVEKLKETLTNLGLNLNVIAVPYDSRYAHLDFKLAGKADRVLVDPPCSNLGV- 273

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
              P ++  R   D+   + +QR+ L      VKPGG +V+S C+L  +++EE +   + 
Sbjct: 274 --RPRLVDDRGVRDVASLSSYQRQFLKAAARVVKPGGYIVYSTCTLTLEENEENIVYAVE 331

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +    +  +  + +       +              +   +S  M G F   LR+
Sbjct: 332 ELGLESVELESSPPFSEKTSYRGVVG------------YRYTPLSGDMPGHFIALLRK 377


>gi|219125377|ref|XP_002182959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405753|gb|EEC45695.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 511

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 96/270 (35%), Gaps = 70/270 (25%)

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VLDLC++PG KT Q   ++ +  +V A DVS+ RL  LR  + R  L       +    
Sbjct: 242 RVLDLCSSPGSKTLQALEIVGTKGRVVANDVSETRLTALRGAVGRSGLPESYTDRIVYSC 301

Query: 301 YCPKKL-------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
               +L       +DA + D PCS  GT R+   VL         +    Q K+LL+ + 
Sbjct: 302 QDATQLILTTTRLWDAAMCDVPCSGDGTCRKDKHVLPMWKPSHGNELHQTQVKILLRALR 361

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL----------------NSAY 397
           +VKPGG+V +S CSL+  + E VV   L       +L P                   A 
Sbjct: 362 WVKPGGVVCYSTCSLNPIEDEAVVAAALLHLRGDDKLAPAVEVIEWPHPTGFTGRPGIAN 421

Query: 398 WKSIDMAMALSPEG------------------------------WIRI-TPDMLE----- 421
           WK  D     S +G                               ++   P M       
Sbjct: 422 WKVADYPRDASDKGLTDEVGVGSGDDGETPRLQWYETYSEAKDAGMQCALPSMWPPEKTT 481

Query: 422 --------KIDGVSSGMDGFFAVALRRLIQ 443
                   ++        GFF   LR+  +
Sbjct: 482 DLHLERCTRLWPQDQDTGGFFLALLRKTAK 511


>gi|156545330|ref|XP_001605827.1| PREDICTED: similar to williams-beuren syndrome critical region
           protein [Nasonia vitripennis]
          Length = 734

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 143/418 (34%), Gaps = 50/418 (11%)

Query: 49  VRAIVNVTLRFLPRIDAVLDF---VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD 105
           + A+V+ TL     + +++D    ++ +   R       L RV + ++L+          
Sbjct: 47  IYALVSETLHHCKELQSIIDQTEILIENP--RFDPW---LARVLITELLW---------- 91

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
                  +         ++  +  +   ++  +    A +    +   +          +
Sbjct: 92  ------GKKVLKSEAKPILTVLNYKEKLQQALVQNPDAAVDPCDKKKVKLPRYVRVNTLL 145

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES----------IVSL 215
            +I +A  +       +     ++   L  +        +++                  
Sbjct: 146 TSIDEALSAFAEDGWRLLPRCYSYTSHLKTISNMGYDNFIQDFHIPEVLIFPPGTKFHDH 205

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272
           PG+  G   +QD ++ +P  L     N  V+D+C+APG KT     +I +  K+ A+++ 
Sbjct: 206 PGYLSGKLLLQDKASCLPAFLLNPKPNSEVMDMCSAPGMKTTHLAAVINNEGKIYAIEMK 265

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLW 330
             R   L   +   +    + I+ DA    P+   +   +LVD  CS +G + R      
Sbjct: 266 DTRYRTLCDFVTNANASCVETIQADALTISPEFYPNIEYILVDPSCSGSGMVDRIEIRKE 325

Query: 331 TRDTDDIV--KSACFQRKLLLQGISFVKPGG-IVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            ++       K    Q  +L   + F  P    VV+S CS+  +++E VV + +      
Sbjct: 326 DQNNLYNRLGKLQSLQSMILNHALKF--PNAKRVVYSTCSIYPEENECVVDEAMTKFGDI 383

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             LV L     + +                D             GFF    +R  +PK
Sbjct: 384 YNLVDLK----RKLKNEWISFGSAEYSYYGDKCLYARPEVDHCSGFFLAVFQR--KPK 435


>gi|291236130|ref|XP_002738014.1| PREDICTED: NOL1/NOP2/Sun domain family, member 5-like [Saccoglossus
           kowalevskii]
          Length = 697

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
           + I +     + +   K     L    + +      +     + +G   +QD ++ IP  
Sbjct: 348 MNITMDGYQCVSSLKKKQFMKDLHFDDLLVFAPNTDLHDNVLYQQGDIILQDKASCIPAH 407

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           +        V+D CAAPG KT+    +I +  K+ A D+  +R+  +     +  +    
Sbjct: 408 VLCPPLGSHVIDTCAAPGNKTSHLASIINNTGKIYAFDLDTKRIGTMGNLTAKAGVMNTQ 467

Query: 293 IIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVL--WTRDTDDIVKSACFQRK 346
           +   D     P     +  + +LVD  C+ +G + R+  ++         +   + FQ  
Sbjct: 468 LFNQDFLKTNPTDNKFQKVEYILVDPSCTGSGIVNRNDHLMGAQGITKARLRSLSSFQVM 527

Query: 347 LLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +L   + F  +K    VV+S CS+ ++++E+VV +VL+ +      +      W    + 
Sbjct: 528 ILKHAMEFPNLK---RVVYSTCSVHREENEDVVAEVLKCNKNFA--LKTVMPSWTHRGLE 582

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +  IR                +GFF     R
Sbjct: 583 GTDVGKHCIR--------ASANVDFTNGFFVALFER 610


>gi|34540254|ref|NP_904733.1| NOL1/NOP2/sun family protein [Porphyromonas gingivalis W83]
 gi|34396566|gb|AAQ65632.1| NOL1/NOP2/sun family protein [Porphyromonas gingivalis W83]
          Length = 468

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 109/288 (37%), Gaps = 22/288 (7%)

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGF 218
              A   A  SP  + +    +       +  +                   S  + P F
Sbjct: 19  EAEAFFAALDSPAPVSIRRNPNKPGIGTTVMDLPTNKSVPWCPLGTYLAERPSFTNDPVF 78

Query: 219 AEGVWWVQDASASIPVQLFGT--LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSK 273
             G ++VQ+AS+    QL      + +  LDLCA+PGGK      ++  G+ + + +V  
Sbjct: 79  HAGGYYVQEASSMFLWQLKPLLGESPVRALDLCASPGGKSTLLTNILPEGSVLVSNEVIH 138

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            R   L  N+ +       + E D        + FD +LVDAPCS  G  R+        
Sbjct: 139 HRANILAENMIKWGYPTGIVTEADPDRLKSAGETFDFILVDAPCSGEGMFRKDEATRSEW 198

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              ++   A  Q+++L      ++PGG++ +S C+ +  ++E+ +  ++ +       + 
Sbjct: 199 SLQNVELCARRQQRILSAAWEMLQPGGLLAYSTCTFNTLENEDNLAFLIDTFGAEPVALD 258

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + + +  +  +          R  P  +           GFF   +R+
Sbjct: 259 VLTEWQIAPQLK---GEAPAYRFFPHKVAGE--------GFFFCLVRK 295


>gi|326435915|gb|EGD81485.1| hypothetical protein PTSG_02202 [Salpingoeca sp. ATCC 50818]
          Length = 510

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 153/453 (33%), Gaps = 46/453 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ +L  V + + ++  L          +LL         A+V  TL++   +DA++   
Sbjct: 8   AAGVLERVRQHKGTIKTLCLEAEYKQKKKLL---------ALVCQTLKYQRAVDAIIAK- 57

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
               L ++    ++L RV    +L   V          E   R K        +  ++  
Sbjct: 58  -AQLLEKEPTLSKELARVLCHDLLIGGV--LRCTGSLYEAIMRHK--DELQTALADLMAE 112

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
              +    L        +P + +           + A+ +       +         T  
Sbjct: 113 RGVDTASALAEDTLAESMPRYARVNPLKQPEAATLTALEETGFQLQQLHAAGPKSTTTLE 172

Query: 191 HKLNAVMLPTGGIRL-KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
            + +          L         +   +  G   +QD ++  P  +         +D C
Sbjct: 173 SRQHYFKDTHLDNLLGFHPRTDFHTHWLYRRGHLILQDKASCFPAAILAPPPGSVCIDAC 232

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           AAPG KT+ L   + +   V A D+S+RR+  +R  L    +     +     D  P   
Sbjct: 233 AAPGNKTSHLAALMHNKGTVFAFDISRRRMGVMRRQLKLAGVTCVKTMLKSFLDTDPTHP 292

Query: 307 F----DAVLVDAPCSSTGTIRR-----------HPDVLWTRDTDDIVKSACFQRKLLLQG 351
                  +L D  CS +G + R            P     +  + +   A FQ +++   
Sbjct: 293 KFRDVKYILCDPSCSGSGIVSRLSDLVDVSDAGEPQTQEEKQQERLKALAEFQVQVVNHA 352

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           +SF      V +S CS+ ++++E+VV  VL ++P   EL     ++ +        S   
Sbjct: 353 LSFPNVE-RVTYSTCSVHQEENEDVVAAVLAANP-SFELAEALPSWHRRGHSDTLPSAAM 410

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            +R  P             +GFF     R  +P
Sbjct: 411 CVRTDP--------AQDFTNGFFVALFVR--KP 433


>gi|332820889|ref|XP_001144101.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 1
           [Pan troglodytes]
          Length = 531

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
               +   +++D         +D +L D PCS  GT+R++ DV     T + ++    Q 
Sbjct: 5   HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400
           ++  +G   +  GG +V+S CSL+  + E V+  +L  S   +EL  +++          
Sbjct: 65  RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124

Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431
           I     ++ +G               +I P M                  +I        
Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184

Query: 432 GFFAVALRRLI-------QPK 445
           GFF   L +         QPK
Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205


>gi|332228172|ref|XP_003263269.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 3
           [Nomascus leucogenys]
          Length = 531

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
               +   +++D         +D +L D PCS  GT+R++ DV     T + ++    Q 
Sbjct: 5   HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400
           ++  +G   +  GG +V+S CSL+  + E V+  +L  S   +EL  +++          
Sbjct: 65  RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124

Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431
           I     ++ +G               +I P M                  +I        
Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184

Query: 432 GFFAVALRRLI-------QPK 445
           GFF   L +         QPK
Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205


>gi|260893142|ref|YP_003239239.1| NusB antitermination factor [Ammonifex degensii KC4]
 gi|260865283|gb|ACX52389.1| NusB antitermination factor [Ammonifex degensii KC4]
          Length = 155

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  +  +L  V          L+    +     L    +    ++V  TL + 
Sbjct: 1   MSRRR-AREAALMVLFQVDVGGAVPEEALERTLAE---WRLGNASREFATSLVLGTLAYR 56

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
           P+ID V++ +     L R     + ++R+++ ++L+  D+     ++ AVE AKR     
Sbjct: 57  PQIDRVIEELSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAKRYGGEE 116

Query: 119 HFAKLVNSILRR 130
              + VN IL +
Sbjct: 117 S-PRFVNGILGK 127


>gi|193786238|dbj|BAG51521.1| unnamed protein product [Homo sapiens]
          Length = 531

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
               +   +++D         +D +L D PCS  GT+R++ DV     T + ++    Q 
Sbjct: 5   HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400
           ++  +G   +  GG +V+S CSL+  + E V+  +L  S   +EL  +++          
Sbjct: 65  RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124

Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431
           I     ++ +G               +I P M                  +I        
Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184

Query: 432 GFFAVALRRLI-------QPK 445
           GFF   L +         QPK
Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205


>gi|119628511|gb|EAX08106.1| NOL1/NOP2/Sun domain family, member 2, isoform CRA_b [Homo sapiens]
          Length = 531

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
               +   +++D         +D +L D PCS  GT+R++ DV     T + ++    Q 
Sbjct: 5   HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400
           ++  +G   +  GG +V+S CSL+  + E V+  +L  S   +EL  +++          
Sbjct: 65  RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124

Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431
           I     ++ +G               +I P M                  +I        
Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184

Query: 432 GFFAVALRRLI-------QPK 445
           GFF   L +         QPK
Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205


>gi|298712110|emb|CBJ32991.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 605

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
            I + P +  G + +Q A++  PV          VLD+ AAPGGK+  +   + +   V 
Sbjct: 428 PIGATPEYLAGHYMLQSAASMCPVMALAPQQGERVLDMSAAPGGKSTYIAQLMRNTGVVI 487

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           A D+  +R      NL RL +    +   D      K + D VL+DAPCS  G I R   
Sbjct: 488 ANDLRPQRQRATVANLHRLGVRNALVCCHDGRKIPFKGV-DRVLLDAPCSGLGVISRDQS 546

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEE 375
           V   R T DI++S+  Q++LL   +  V      GG++V+S CS+   ++E+
Sbjct: 547 VKIQRTTKDILRSSHLQKELLCAAVDAVSAKSATGGVIVYSTCSVSVAENEQ 598


>gi|321470952|gb|EFX81926.1| hypothetical protein DAPPUDRAFT_317133 [Daphnia pulex]
          Length = 449

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/453 (13%), Positives = 155/453 (34%), Gaps = 45/453 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ +L     ++ SL  L+      S FR +       + A+V  + +    +D +++
Sbjct: 23  RKAARILKSAEERKGSLKNLI----YSSGFRDVKP-----LYALVAESCKHQIELDELVN 73

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAVVDLAVEQ--AKRDKENRHFAK 122
                 L   +     L R+ + ++L    YL   +   + + +E     R   +   ++
Sbjct: 74  NTA--GLQNVQPFDPYLARILITELLWGKGYLKPENARAIRIILELENDLRQALDSMKSQ 131

Query: 123 LVNSILRRVSREKIELLQR--IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
             N  + ++S  +   +         +  +   E  +    K++                
Sbjct: 132 EENDSVHQISAPRYVRVNTLVSTTEKVCTKLIAEGWKQVKSKKKTGYEG----------- 180

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                +++ +     +      + +        +      G   +QD ++ +      T 
Sbjct: 181 -FIERVKSLSENEFIMDFHLDFLLVFPSSAQFHNHDLLRNGSILLQDKASCLSAVALQTK 239

Query: 241 NNL-SVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                ++D C+APG KT+    L  + + + A++   +R   LR  +         +   
Sbjct: 240 PFYGKMIDACSAPGMKTSLLAALSNNQSSIIAIERDAKRCNTLRQTVSNARASKVSVQRA 299

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD------DIVKSACFQRKLLLQ 350
           D  +  P    D   +    S +GT   +      +  +       + + +  Q +L+  
Sbjct: 300 DFLNLDPSDYQDVKYILVDPSCSGTGIVNRLDPKRKQEEGASLELRLKRLSSLQSRLVEH 359

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             +F      +V+S CS+ ++++E VV++VL        L      + +    +    P+
Sbjct: 360 AATFPSVE-RIVYSTCSIHEEENEAVVRQVLSKIGNSFRLDEALPWWPRRGTNSYDNPPD 418

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
             I +      + +      +GFF     R+ +
Sbjct: 419 DIIGL---KCVRAEAEKDLTNGFFIALFVRVGE 448


>gi|219124772|ref|XP_002182670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406016|gb|EEC45957.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 840

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKR 274
             G    Q+  + IP  +  T  N SVLD+CAAPG KT+Q+          + A D + +
Sbjct: 171 DCGHITRQETVSMIPPVVLNTQPNDSVLDMCAAPGSKTSQILEQLDGPRGCLVANDANPQ 230

Query: 275 RLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           R   L   L R+        I   DA  +     FD +L DAPCS  GT R++  V  T 
Sbjct: 231 RAYMLTHQLRRIMHVNPVVMITACDAQFFPAVTQFDKILADAPCSGDGTSRKNIGVWKTW 290

Query: 333 DTDDIVKSACFQRKLLLQ-GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                +     Q ++  +     ++ GG + +S CS++  ++E VV ++LR     +ELV
Sbjct: 291 TQVGALGLHTLQVEIAWKGASQLLRVGGDLCYSTCSMNPMENEAVVAELLRRGQGQLELV 350

Query: 392 PLNSAYWKSID 402
           P+    +++  
Sbjct: 351 PITLQGFRTRP 361


>gi|157961750|ref|YP_001501784.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella pealeana
           ATCC 700345]
 gi|189045730|sp|A8H3W2|RSMF_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase F;
           AltName: Full=16S rRNA m5C1407 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmF
 gi|157846750|gb|ABV87249.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella pealeana
           ATCC 700345]
          Length = 488

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD+ +APG KT Q+   + +   + A + S  R++ L  N+ R+ +    +   DA  +
Sbjct: 131 VLDMASAPGSKTTQIAALMKNQGLLIANEYSASRVKVLHANVARMGVANCALTHFDARVF 190

Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD++L+DAPCS  GTIR+ PD L   D +D       Q+ L+      +K GG
Sbjct: 191 GEYMFETFDSILLDAPCSGEGTIRKDPDALKNWDNNDDKGIVETQKALIESAFLALKVGG 250

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+S C+L +Q++++V   +       VE   L + + ++     A + EG++ + P +
Sbjct: 251 SLVYSTCALSRQENQDVCHHLKSLYGDAVEFGSLATLFPQA---DKACTEEGFLHVWPQI 307

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
            +          GFF   + +
Sbjct: 308 YDSE--------GFFVAKIYK 320


>gi|325913844|ref|ZP_08176203.1| NusB family protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325539919|gb|EGD11556.1| NusB family protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 241

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 16/233 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +G+ +RL ++H+L+ V  +  SL   L       A      RD+ LV AI    LR  P 
Sbjct: 8   AGVASRLAAAHVLTAVFDQGRSLKAELAAALPGIA----DPRDRALVEAICFAVLRRRPA 63

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
            D  L   +   LP +   L+ LL    AQ+  L +  +A +   VE  +     R  A 
Sbjct: 64  YDVALRQWMERPLPPRDAELKALLMAGFAQLDVLQLPAHAALSATVEACRALGRPRQ-AG 122

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDLT 181
           +VN+ILRR  RE    +   AG    P W +++L   +  +   + ++ A ++P+++ + 
Sbjct: 123 MVNAILRRAQREGFPAVSDDAGW---PSWLRKQLRADWGEQAEAIFVASAQMAPMWLRVH 179

Query: 182 V-KFDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQD 227
             + D   +  +L    +      +       +    +  LPGFA+G   VQD
Sbjct: 180 RGRTDPAAYVARLEEAGISAQTDTVLPDALRLQSAVPVSQLPGFAQGDVSVQD 232


>gi|302795624|ref|XP_002979575.1| hypothetical protein SELMODRAFT_111166 [Selaginella moellendorffii]
 gi|300152823|gb|EFJ19464.1| hypothetical protein SELMODRAFT_111166 [Selaginella moellendorffii]
          Length = 425

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 27/289 (9%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL--PGFAEGVWWVQD 227
            A +   ++ L +K ++      L            + +  + + +      E +  +  
Sbjct: 113 KAALRAAFVRLMMKKNVTEIDGLLPTESRQLQSYIPRYVRVNTLQITVDEALEKLEELGS 172

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ IP  +     +  VLD CA+PG KT  L   +    +VTA ++ K+RL+ L+  + 
Sbjct: 173 KASCIPAHVLSPDPDWEVLDACASPGNKTVHLAALMKGKGRVTACELHKKRLQVLQDTVK 232

Query: 285 RLHLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIRRHPDV---------LWT 331
           R       +   D     P     +   A+L+D  CS +GT  +  D           + 
Sbjct: 233 RAGANNIQVKHQDFLKLDPNASDYRKVRAILLDPSCSGSGTTVQRMDHLLPVANGQSFFQ 292

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
            D   I + A FQ+  L   +SF      VV+S CS++++++E+VVQ VL  +      +
Sbjct: 293 HDAQRIDRLASFQKAALCHALSFPAVE-RVVYSTCSVNQRENEDVVQSVLEHARSHKFKL 351

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 W    + +    +  +R         D +    DGFF     R
Sbjct: 352 GTVLPNWPHRGLPVFDGAQHLLRT--------DALRDKTDGFFVALFVR 392


>gi|15835455|ref|NP_297214.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum Nigg]
 gi|270285637|ref|ZP_06195031.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum Nigg]
 gi|270289646|ref|ZP_06195948.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum Weiss]
 gi|301337033|ref|ZP_07225235.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum MopnTet14]
 gi|8163331|gb|AAF73608.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum Nigg]
          Length = 368

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 52/344 (15%)

Query: 36  SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95
                L  +D+  + + +   LR    ++ ++                            
Sbjct: 32  KEHPALGSKDRQWINSRIFTILRHRRLLETLI---------------------------- 63

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155
                   ++   E + +    +    +  +I               A    + +   E 
Sbjct: 64  --------LEEGKEISSQTLVEKVEEGVTENIEH-------FQHLPWAVRYSVSDDLAEC 108

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL-----KELPE 210
           L   YG+E  + ++   +      + V     +       +   +           +   
Sbjct: 109 LSADYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQEVLPFSSQRGAAPSSLRFDKRY 168

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270
            +     F  G++ +QD S+ I        ++ +VLD CA  GGK+         VT  D
Sbjct: 169 PLQHTRAFRRGLFEIQDESSQIITNAILVKDSDTVLDFCAGAGGKSLIFAQRAQHVTLHD 228

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
              + LE+ R  L R  +    I  +    +        V+VDAPC+ +G  RRHP+   
Sbjct: 229 SRPQALEEARQRLSRSGIKNFTIASLPLKQHGFSL----VVVDAPCTGSGVFRRHPEKKL 284

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
                 +  ++  Q K+L Q  ++V P G +V+  CSL K+++E
Sbjct: 285 LFSKQLLKNNSVAQGKILKQAQTYVAPRGRLVYITCSLLKEENE 328


>gi|166154768|ref|YP_001654886.1| putative methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|166155643|ref|YP_001653898.1| putative methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336042|ref|ZP_07224286.1| putative methyltransferase [Chlamydia trachomatis L2tet1]
 gi|165930756|emb|CAP04253.1| putative methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|165931631|emb|CAP07207.1| putative methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 368

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 123/364 (33%), Gaps = 52/364 (14%)

Query: 36  SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95
                L  +D+  +   +   LR    ++A+                             
Sbjct: 32  KEHPSLGSKDRQWINTRIFTILRHRRLLEAL----------------------------- 62

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155
                  V+    E + +    +    +  +I +                  I +   E 
Sbjct: 63  -------VLAEGKEISAQTLVEKVEEGVTENIEQ-------FQHLPWPVRYSISDDLAEC 108

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPE 210
           L   YG+E  + ++   +      + V     +       +  P            E   
Sbjct: 109 LTTDYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKVLPFPCQRGAAPSSLRFEKRY 168

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270
            +     F  G++ +QD S+ I        ++ +VLD CA  GGK+         VT  D
Sbjct: 169 PLQHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCAGAGGKSLIFAQRARHVTLHD 228

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
              + LE+ R  L R  +    I          K  F  V+VDAPC+ +G  RRHP+   
Sbjct: 229 SRPQALEEARHRLPRSGIKNFTIPS----QPLKKHSFSLVVVDAPCTGSGVFRRHPEKKL 284

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                 +  ++  Q K+L + +++V P G +V+  CSL K+++E+    +       V+ 
Sbjct: 285 LFSKQLLHNNSIAQEKILKEALAYVAPRGRLVYITCSLMKEENEKHTSWMASQGWKCVKE 344

Query: 391 VPLN 394
           V + 
Sbjct: 345 VKIP 348


>gi|119719678|ref|YP_920173.1| Fmu (Sun) domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524798|gb|ABL78170.1| Fmu (Sun) domain protein [Thermofilum pendens Hrk 5]
          Length = 443

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 160/448 (35%), Gaps = 36/448 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +S ++  V R + SL         +     LS+ +   V A+  +TL  +      L 
Sbjct: 17  RAASLVVERVQRWKASLDYSFQSVRKE---FNLSKPEARTVYALARLTLLNVGVAILALK 73

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +  S +P ++   +    V+VA +L     +  V  L          +    + +  ++
Sbjct: 74  KLGRSGIPLRR---KSAFYVAVALVLKYPGFEKRVESLRGGLVSNVLLSSITPRFLERLI 130

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYIDLTVKFDIE 187
                       RIA +  +P    E L    G  R   ++ +     +++    +   E
Sbjct: 131 EEAREL--GCRDRIAYLYSVPPLVSEVLVENLGCARAEEVARSFERRFVWLRAVGEKGRE 188

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQDASAS---IPVQLFGT 239
                L  + +        +    ++      LP  +  +   QD ++    + +   G 
Sbjct: 189 KLEEFLVGLGIRFRRDPEIDGLYELLLPSYEPLPEVSPELAVYQDKASVAVVMELVKLGE 248

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
               + +D  AAP  K            ++ A+D+S  R+   R  L         I+  
Sbjct: 249 TCVSTCIDAAAAPFMKTSLYCDARRCCDEILAVDISFNRIRDSRGVLLGCR-KIVHIVNS 307

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIVKSACFQRKLLLQGIS 353
           D+     + LFD  LVDAPC+++G I + P +    W  D +++   +  QR++L   + 
Sbjct: 308 DSRFLATRTLFDEGLVDAPCTNSGAIGKDPGLRLSLWELDREEVALYSTRQREILRNVLR 367

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +K GG V +S CS+  ++ EEVV+ V       +   PL             ++     
Sbjct: 368 HMKHGGRVAYSTCSVLPEEGEEVVKDVAADGESSLLRPPLFFDEAYPRYGLRGVAT---- 423

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441
           R  PD              FF   L + 
Sbjct: 424 RTFPDKHRSEA--------FFIALLEKK 443


>gi|33416857|gb|AAH55530.1| Zgc:66176 [Danio rerio]
 gi|182890860|gb|AAI65602.1| Zgc:66176 protein [Danio rerio]
          Length = 483

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 160/445 (35%), Gaps = 38/445 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M   L ++ +L  V +KR      +     DS F  + Q     + A+V  T ++   + 
Sbjct: 1   MALYLKAAEILEKVEQKRG----AVKTLVYDSKFPNIKQ-----LFALVCETQKYSSVLQ 51

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++D      L   K  +  L +V V  +L                  R +     A++ 
Sbjct: 52  EIID--STKLLKETKLRIH-LAKVLVYDLLIGHGVKCGGAWKMTMLKHRARLQAALARIK 108

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                  +++ +    +     +IP + +        ++ +  +     S          
Sbjct: 109 IKRKVSRNQDLLPSSIQQTQNDVIPRYVRVNTLKTSLEDVIDYLKREGFSYQGTP-GRLE 167

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D++  + K+    L    + +            +  G   +QD ++ +P  L        
Sbjct: 168 DLDRLSGKMFLCDLHLKDLLVFSGKTDFHDHFLYKAGHIILQDKASCLPAFLLNPPVGSH 227

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+    ++ +  K+ A D+  +RL  +   L R  +    +   D    
Sbjct: 228 VIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAKRLSTMSTLLLRAGVTCHKLANQDFLKV 287

Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF--V 355
            P+         +L+D  CS +G +    ++  T++   +   A FQ   L   + F  +
Sbjct: 288 DPQNSEYKEVKYILLDPSCSGSGMVCLLDELPETQEDGRLQALAAFQLHCLNHALQFPQL 347

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +    +V+S CS+  Q++EEVV   L+ +P    LV L   + +     +       +R 
Sbjct: 348 E---RIVYSTCSIHSQENEEVVTACLQQNPG-FRLVHLLPDWPERGHEPLT----QCLR- 398

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                       +   GFF   L R
Sbjct: 399 -------ASTAKTRTHGFFVAMLER 416


>gi|288926917|ref|ZP_06420816.1| NOL1/NOP2/sun family protein [Prevotella buccae D17]
 gi|288336315|gb|EFC74697.1| NOL1/NOP2/sun family protein [Prevotella buccae D17]
          Length = 432

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 109/305 (35%), Gaps = 21/305 (6%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPTG 201
             +P+ F++      G      +         + + +           A +  A +    
Sbjct: 1   MNLPKDFEQYTRRLMGDALYDTLCRGLDDVPPVSIRLNPFKCGGAAMAATRGEAGVPWCA 60

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQL 259
                    +    P    G+++VQ+AS+              +  LDLCAAPGGK+   
Sbjct: 61  EGVYLRERPNFTFDPLLHAGLYYVQEASSMFVAHVLRSLVSGPVLALDLCAAPGGKSTCA 120

Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAP 315
           +     G+ + A +  K R + L  N+ +       +     A     +  FD +L D P
Sbjct: 121 MGALPEGSVLCANEPVKPRAQILAENVLKFGHPDIIVTANFAADYARTRLDFDIILADVP 180

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+    +     D++ +    QR ++      +KPGG++++S C+ + +++EE
Sbjct: 181 CSGEGMFRKDEGAVAEWSADNVERCRRLQRDIVADIWPRLKPGGLLLYSTCTFNARENEE 240

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
             + +          +P+ +A+  +             R  P              G F 
Sbjct: 241 NAEWIADQLGADFVEIPVEAAWNIT---GSLTDDRPMYRFIPGKTRGE--------GLFM 289

Query: 436 VALRR 440
             LR+
Sbjct: 290 AVLRK 294


>gi|307169943|gb|EFN62452.1| Putative methyltransferase NSUN6 [Camponotus floridanus]
          Length = 462

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 89/240 (37%), Gaps = 20/240 (8%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
            F      +Q+  + I   +       ++LD+CAAPG KT  +         +   ++  
Sbjct: 225 EFLRPYALLQNLPSIICSLVLNPQPGETILDMCAAPGNKTTHISFLMKGQGKIIALEKNA 284

Query: 277 EKLRCNLDRLHLYAEDIIEMD----------------AFDYCPKKLFDAVLVDAPCSSTG 320
            K +   ++ +     I   D                      +  FD +L+DAPCS+ G
Sbjct: 285 GKAKRFKEKCNDENIKIFCYDATKAVVERGDSFVGNTDTPPFKQDHFDRILLDAPCSALG 344

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
              + P +  T     +      QR L    +  +K  GI+V+S C++   ++E ++   
Sbjct: 345 ---QRPQLYNTITLAQLRSYIPLQRSLFSAAVRLLKQNGILVYSTCTITIAENEGIIAWA 401

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L+  P  ++L  +      +       + +G +      + + D  S    GFF    ++
Sbjct: 402 LKQFP-QLKLESVTDRIKTNRYGRQGYTIDGLVNENARKVCRFDTESIDSVGFFIACFKK 460


>gi|307565559|ref|ZP_07628039.1| NOL1/NOP2/sun family protein [Prevotella amnii CRIS 21A-A]
 gi|307345718|gb|EFN91075.1| NOL1/NOP2/sun family protein [Prevotella amnii CRIS 21A-A]
          Length = 439

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 108/237 (45%), Gaps = 11/237 (4%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLI---VSGAKVTALD 270
           P F  G ++VQ+AS+     +     +   + LDLCAAPGGK+         G+ + A +
Sbjct: 75  PLFHAGSYYVQEASSMFIDHIIRQYIHYPVTALDLCAAPGGKSTCAQSASPIGSTLIANE 134

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329
              +R + L  N+ +       +      D+   K LFD ++ D PCS  G  R+ P  +
Sbjct: 135 PITKRAQILSENILKFGHSQIAVTNNFPKDFKKTKLLFDIIIADVPCSGEGMFRKDPKAI 194

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
            +   +++ K    QR ++      +K GG +++S C+ +  ++EE V  +++   +  +
Sbjct: 195 SSWSKENVKKCCQLQRSIIKDIWDNLKEGGFLIYSTCTFNSLENEENVAWIIKE--LGAK 252

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFAVALRRLIQP 444
           L+P+++    +I  ++  +P      T       +     +  +G F   L++  +P
Sbjct: 253 LLPIHTEKEWNITGSLIGNPLNGADSTAQQFPVYRFLPGKTLGEGLFICLLQK-TKP 308


>gi|148227140|ref|NP_001090297.1| NOP2/Sun domain family, member 6 [Xenopus laevis]
 gi|114108045|gb|AAI23126.1| MGC154309 protein [Xenopus laevis]
          Length = 467

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/270 (22%), Positives = 106/270 (39%), Gaps = 43/270 (15%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F     G  ++Q+  +++   +        +LD+CAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLSGYIFLQNLPSAVVSHVLNPQPGERILDMCAAPGGKTTHIATLMEDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---------------DYCPKKLFD 308
            +V ALD    ++EK++ N   L L        ++                     + FD
Sbjct: 260 GEVIALDKIASKVEKIKQNASVLKLKCIKAFCFNSTKAVRDQNCPDEQGDGPPFFPESFD 319

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L+DAPCS  G   + P+++      ++      QRKL    +  ++PGG +V+S C++
Sbjct: 320 RILLDAPCSGMG---QRPNMVCPFSLKELTSYQPLQRKLFSAAVELLRPGGTLVYSTCTV 376

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPDML----- 420
              ++EE V   L++ P  ++L P          M   L P+      R  P  +     
Sbjct: 377 TLSENEEQVAWALKTFPC-LKLQPQEPHVGGEGMMGAELPPDQLKLLQRFDPSRVEFCSV 435

Query: 421 ----------EKIDGVSSGMDGFFAVALRR 440
                     + I   +    GFF     +
Sbjct: 436 DTNHCSAQPSDTIPLANKDTIGFFIARFLK 465


>gi|18314169|ref|NP_560836.1| sun family protein [Pyrobaculum aerophilum str. IM2]
 gi|18161759|gb|AAL65018.1| sun family protein [Pyrobaculum aerophilum str. IM2]
          Length = 414

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 144/439 (32%), Gaps = 47/439 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
            + +L  V    ++L         +       +        +    +R    +      +
Sbjct: 12  VAKVLYEVAANGLTLDYAFQKVKRNWRSLQSFKV----FYDVSFDAVRHYYFLKFAASKL 67

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             SS  +       + R     +LY                K+    R  A+   ++ + 
Sbjct: 68  FGSSAMKAVAKAWFIYRADA--LLYNKDLVTRY--------KKRLLKRALARPEEALEQL 117

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETW 189
                  +       S  P+     L +    E    +     + +++ +  +K DI+  
Sbjct: 118 EGLRDNAVEYLSVKYSYHPKIVSTLLSHLPQGEVERLLEAGNATWIWLRINTLKADIDKA 177

Query: 190 AHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
              L A        ++            +  L      +   QD ++   V         
Sbjct: 178 LRILEAEAEVEPHPKIPFVVLLKNAKRPVQYLEAVKRFLAIPQDLASIYAVLSLNPQPGD 237

Query: 244 SVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            ++DL AAPG KT+   QL    AK+ A+D+S +R+ ++R  L  L       +      
Sbjct: 238 RIIDLAAAPGMKTSLIAQLAEGRAKIVAVDLSAKRVSRMRHLLKNLGAGGFVEVVRADSR 297

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD  L+DAPC+S+G   + P V      +D  K +  Q+ LL   +S       
Sbjct: 298 ALKTRRFDKALLDAPCTSSGAFTKEPAVKIYPRLEDAPKYSKLQKALLKNALSL---ASE 354

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           VV++ CS+  ++ EEVV  V               A     D+A +   E   R  P + 
Sbjct: 355 VVYAVCSILPEEGEEVVTSV------------GAKAEKPLGDLASSYRGEVGGRTFPHV- 401

Query: 421 EKIDGVSSGMDGFFAVALR 439
                     + FF   LR
Sbjct: 402 -------HKSEAFFISRLR 413


>gi|76789290|ref|YP_328376.1| 16S rRNA m(5)C 967 methyltransferase [Chlamydia trachomatis
           A/HAR-13]
 gi|237802982|ref|YP_002888176.1| putative methyltransferase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804904|ref|YP_002889058.1| putative methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167820|gb|AAX50828.1| 16S rRNA m(5)C 967 methyltransferase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273204|emb|CAX10117.1| putative methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274216|emb|CAX11010.1| putative methyltransferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 368

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 123/364 (33%), Gaps = 52/364 (14%)

Query: 36  SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95
                L  +D+  +   +   LR    ++A+                             
Sbjct: 32  KEHPSLGSKDRQWINTRIFTILRHRRLLEAL----------------------------- 62

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155
                  V+    E + +    +    +  +I +                  I +   E 
Sbjct: 63  -------VLAEGKEISAQTLVEKVEEGVTENIEQ-------FQHLPWPVRYSISDDLAEC 108

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPE 210
           L   YG+E  + ++   +      + V     +       +  P            E   
Sbjct: 109 LTTDYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKVLPFPCQRGAAPSSLRFEKRY 168

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270
            +     F  G++ +QD S+ I        ++ +VLD CA  GGK+         VT  D
Sbjct: 169 PLQHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCAGAGGKSLIFAQRARHVTLHD 228

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
              + LE+ R  L R  +    I          K  F  V+VDAPC+ +G  RRHP+   
Sbjct: 229 SRPQALEEARHRLSRSGIKNFTIPS----QPLKKHSFSLVVVDAPCTGSGVFRRHPEKKL 284

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                 +  ++  Q ++L + +++V P G +V+  CSL K+++E+    +       V+ 
Sbjct: 285 LFSKQLLHNNSIAQERILKEALAYVAPCGRLVYITCSLMKEENEKHTSWMASQGWKCVKE 344

Query: 391 VPLN 394
           V + 
Sbjct: 345 VKIP 348


>gi|270013278|gb|EFA09726.1| hypothetical protein TcasGA2_TC011859 [Tribolium castaneum]
          Length = 425

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 100/269 (37%), Gaps = 22/269 (8%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           V         +     L    I        ++       G   +Q+  + I   +     
Sbjct: 170 VILGRNHLFCETPQTGLAIKMIETISSCPPVLGDNFLPPGAALLQNLPSIICTHVLAPCP 229

Query: 242 NLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
           N ++LD+CA+PG KT  +     +  ++ A+D +  ++ +LR   +       +I++ D+
Sbjct: 230 NDTILDMCASPGNKTTHIAALLKNQGRLVAIDKTPTKVAQLRQRCENFGAK-VEILQTDS 288

Query: 299 FDYCPKKLF---DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                +  +   D +L+DAPCS+ G   + P  + T     +      QRKL    +  +
Sbjct: 289 TKLLDRFCYESFDKILLDAPCSALG---KRPQFVNTTSRKILRSYVPLQRKLFETAVQLL 345

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GW 412
           K  G +V+S C++   ++E +V   L++    +ELV               L+ E     
Sbjct: 346 KTDGTLVYSTCTITLAENEGIVAWALKNFK--LELVEAAPILGGPGWDGTQLTSEQLKKV 403

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            R  P              GFF     + 
Sbjct: 404 QRFGPHQSIDSV-------GFFIAKFVKK 425


>gi|296081680|emb|CBI20685.3| unnamed protein product [Vitis vinifera]
          Length = 626

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 167/457 (36%), Gaps = 64/457 (14%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  ++ +L CV++       +       S     S R++    A+V  TL+ L  I  V
Sbjct: 32  ARREAAKVLQCVLQGDAKRRAV---GSIKSLVYSPSVRNKKATFALVCQTLKHLSIIKDV 88

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           LD      L  K    + L+ +    IL+        +    +  K     +   +L  +
Sbjct: 89  LD--SARILNAKWKRQEGLMYIITYDILF-----GQEISSVGDAEKFLLLQKDAIQL--A 139

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           + R + R+K++ ++ +  +  IP+  K R                          +K D+
Sbjct: 140 LARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNT--------------------LKLDV 179

Query: 187 ETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           E+  H+L    +      +           + + P    G  ++Q  ++S+     G   
Sbjct: 180 ESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPEP 239

Query: 242 NLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              VLD C+APG KT  L   +    K+ A ++   R+++L   +        +++  D 
Sbjct: 240 GWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGDF 299

Query: 299 ----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL----------WTRDTDDIVKSACFQ 344
                         A+L+D  CS +GT     D L              T+ + K A FQ
Sbjct: 300 LNLNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAFQ 359

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +K L   +SF      VV+S CS+ + ++E+V++ VL  +      +      W    + 
Sbjct: 360 KKALEHALSFPAVE-KVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFPQWPRRGLP 418

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +    E  +R  P   ++         GFF     R 
Sbjct: 419 VFEGSEHLLRTHPVEDKE---------GFFIALFVRK 446


>gi|255348932|ref|ZP_05380939.1| putative methyltransferase [Chlamydia trachomatis 70]
 gi|255503472|ref|ZP_05381862.1| putative methyltransferase [Chlamydia trachomatis 70s]
 gi|255507150|ref|ZP_05382789.1| putative methyltransferase [Chlamydia trachomatis D(s)2923]
 gi|289525598|emb|CBJ15076.1| putative methyltransferase [Chlamydia trachomatis Sweden2]
 gi|296435158|gb|ADH17336.1| putative methyltransferase [Chlamydia trachomatis E/150]
 gi|296438878|gb|ADH21031.1| putative methyltransferase [Chlamydia trachomatis E/11023]
          Length = 368

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 123/364 (33%), Gaps = 52/364 (14%)

Query: 36  SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95
                L  +D+  +   +   LR    ++A+                             
Sbjct: 32  REHPSLGSKDRQWINTRIFTILRHRRLLEAL----------------------------- 62

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155
                  V+    E + +    +    +  +I +                  I +   E 
Sbjct: 63  -------VLAEGKEISAQTLVEKVEEGVTENIEQ-------FQHLPWPVRYSISDDLAEC 108

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPE 210
           L   YG+E  + ++   +      + V     +       +  P            E   
Sbjct: 109 LTTDYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKVLPFPCQRGAAPSSLRFEKRY 168

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270
            +     F  G++ +QD S+ I        ++ +VLD CA  GGK+         VT  D
Sbjct: 169 PLQHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCAGAGGKSLIFAQRARHVTLHD 228

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
              + LE+ R  L R  +    I          K  F  V+VDAPC+ +G  RRHP+   
Sbjct: 229 SRPQALEEARHRLSRSGIKNFTIPS----QPLKKHSFSLVVVDAPCTGSGVFRRHPEKKL 284

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                 +  ++  Q K+L + +++V P G +V+  CSL K+++E+    +       V+ 
Sbjct: 285 LFSKQLLHNNSIAQEKILKEALAYVAPRGRLVYITCSLMKEENEKHTSWMASQGWKCVKE 344

Query: 391 VPLN 394
           V + 
Sbjct: 345 VKIP 348


>gi|47086913|ref|NP_998450.1| NOP2/Sun domain family, member 5 [Danio rerio]
 gi|42542704|gb|AAH66371.1| Zgc:77183 [Danio rerio]
          Length = 435

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 159/445 (35%), Gaps = 38/445 (8%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M   L ++ +L  V +KR      +     DS F  + Q     + A+V  T ++   + 
Sbjct: 1   MALYLKAAEILEKVEQKRG----AVKTLVYDSKFPNIKQ-----LFALVCETQKYSSVLQ 51

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +++      L   K  +  L +V V  +L                  R +     A++ 
Sbjct: 52  EIIN--STKLLKETKLRIH-LAKVLVYDLLIGHGVKCGGAWKTTMLKHRARLQAALARIK 108

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
                  +++ +    +     +IP + +        ++ +  +     S          
Sbjct: 109 IKRKVSRNQDLLPSSIQQTQNDVIPRYVRVNTLKTSLEDVIDYLKREGFSYQGTP-GRLE 167

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D++  + K+    L    + +            +  G   +Q  ++ +P  L        
Sbjct: 168 DLDRLSGKMFLCDLHLKDLLVFSGKTDFHDHFLYKAGHIILQGKASCLPAFLLNPPVGSH 227

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+    ++ +  K+ A D+  +RL  +   L R  +    +   D    
Sbjct: 228 VIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAKRLSTMSTLLLRAGVTCHKLANQDFLKV 287

Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF--V 355
            P+         +L+D  CS +G +    ++  T++   +   A FQ   L   + F  +
Sbjct: 288 DPQNSEYKEVKYILLDPSCSGSGMVCLRDELPETQEDGRLQALAAFQLHCLYHALQFPQL 347

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +    +V+S CS+  Q++EEVV   L+ +P    LV L   + +     +       +R 
Sbjct: 348 E---RIVYSTCSIHSQENEEVVTACLQRNPG-FRLVHLLPDWPERGHEPLT----QCLR- 398

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                       +   GFF   L R
Sbjct: 399 -------ASTAKTRTHGFFVAMLER 416


>gi|297741823|emb|CBI33136.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 33/215 (15%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + +P        +  VLD+CAAPG KT Q             + G  V A DV
Sbjct: 163 ITRQEAVSMVPPLFLDVSPDHFVLDMCAAPGSKTFQLLEIIHRSTKPGTLPGGMVVANDV 222

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------------LFDA 309
             +R   L     R+      +   +A  +                          +FD 
Sbjct: 223 DVKRCNLLIHQTKRMCTANLIVTNHEAQHFPGCCLNKLSSDSSEIGVVKEQSMSQLMFDR 282

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL D PCS  GT+R+ PD+    +        C Q ++ ++GIS +K GG +V+S CS++
Sbjct: 283 VLCDVPCSGDGTLRKAPDIWRKWNVGMGNGIHCLQVQIAMRGISLLKVGGRMVYSTCSMN 342

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             ++E VV ++LR     VELV ++    + +   
Sbjct: 343 PVENEAVVAEILRRCGGSVELVDVSCELPQLVRRP 377


>gi|189241190|ref|XP_001810247.1| PREDICTED: similar to GA10764-PA [Tribolium castaneum]
          Length = 516

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 27/344 (7%)

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           A R          ++  + R       ++         P+   + +           +  
Sbjct: 187 AHRWIRAHIAGAGLDLRVERHPSCADAVIVHHPVSHQTPQKHNKEIVVDAVCGAA-VLRG 245

Query: 171 ACISPL----YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
           A I        +      D  +    L+                 I +          +Q
Sbjct: 246 AHIYAPGVIGMMSNIQIGDNVSIYVDLDKKCKKGFLKLYNGKKTFIGNGEVILGRAALLQ 305

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           +  + I   +     N ++LD+CA+PG KT  +     +  ++ A+D +  ++ +LR   
Sbjct: 306 NLPSIICTHVLAPCPNDTILDMCASPGNKTTHIAALLKNQGRLVAIDKTPTKVAQLRQRC 365

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           +       +I++ D+     +  +   D +L+DAPCS+ G   + P  + T     +   
Sbjct: 366 ENFGAK-VEILQTDSTKLLDRFCYESFDKILLDAPCSALG---KRPQFVNTTSRKILRSY 421

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
              QRKL    +  +K  G +V+S C++   ++E +V   L++    +ELV         
Sbjct: 422 VPLQRKLFETAVQLLKTDGTLVYSTCTITLAENEGIVAWALKNFK--LELVEAAPILGGP 479

Query: 401 IDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                 L+ E      R  P              GFF     + 
Sbjct: 480 GWDGTQLTSEQLKKVQRFGPHQSIDSV-------GFFIAKFVKK 516


>gi|326392334|ref|ZP_08213764.1| Fmu (Sun) domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325991625|gb|EGD50187.1| Fmu (Sun) domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 170

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 5/165 (3%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277
           G++++Q+ +A   V++        +LD+ AAPGGKT      I     + A ++ K+R++
Sbjct: 6   GLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKIGDEGIIVANEIDKKRIK 65

Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L  N++R+ +    I     +      +  FD +LVDAPCS  G  R+ P        +
Sbjct: 66  ALVENVERMGIRNIVITNETPEKLATAFEGYFDKILVDAPCSGEGMFRKDPTARKIWSLN 125

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           +++  +  QR +L      +K GGI+V+S C+   ++ E V++  
Sbjct: 126 NVMSCSITQRNILRSVAPLLKKGGILVYSTCTFAPEEDEGVIKNF 170


>gi|34763759|ref|ZP_00144677.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886473|gb|EAA23730.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 196

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 97/201 (48%), Gaps = 19/201 (9%)

Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFD 300
           VLD+CAAPGGKTA   + + +  +V A+D+ + +++ +  N+ +L +     I +D    
Sbjct: 6   VLDICAAPGGKTAVLAEEMKNSGEVIAIDIHQHKIKLIDTNMKKLGIDIVKAIVIDAKNV 65

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD +LVD PCS  G IR+ P++L++++ + + +    Q ++L      +K GG 
Sbjct: 66  NKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRESVEELTKLQLEILNSAADILKDGGE 125

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           +++S C++  +++   ++K L       VE + +        D                 
Sbjct: 126 LIYSTCTITDEENTNNIKKFLEERKEFKVEKLYIPENVSGDYDNLGGF------------ 173

Query: 420 LEKIDGVSSGMDGFFAVALRR 440
              I+     MD F+ + L++
Sbjct: 174 --CINYKEEIMDNFYIIKLKK 192


>gi|329296317|ref|ZP_08253653.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Plautia stali
           symbiont]
          Length = 443

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 115/268 (42%), Gaps = 37/268 (13%)

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
             +  +  +L  +     G+ +    E   + S+     G++++Q+AS+ +PV       
Sbjct: 40  TRVAGYGWQLTPIPWCREGLWIARDDESLPLGSVAEHFSGLFYIQEASSMLPVSALFDAA 99

Query: 242 N--LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                V+D+ AAPG KT Q+   + +   + A + S  R++ L  N+ R  +    +   
Sbjct: 100 PDAHQVMDVAAAPGSKTTQMAALMRNQGAILANEYSASRVKVLHANISRCGVSNVALTHF 159

Query: 297 DAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           D   +       FDA+++DAPC   G +R+  D L           A             
Sbjct: 160 DGRVFGAALPEQFDAIVLDAPCPGEGVVRKDADALRNWTLASTEAIAA------------ 207

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
                 +++S C+L+  ++++V+  + +  P  +E+VPLN  +        AL+PEG++ 
Sbjct: 208 -----TLIYSTCTLNTLENQQVIAWLQQRYPEALEIVPLNDLF---AGAERALTPEGFLH 259

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P +L+          GFF   LR+  
Sbjct: 260 VFPHILDSE--------GFFVARLRKTA 279


>gi|7020309|dbj|BAA91075.1| unnamed protein product [Homo sapiens]
          Length = 531

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
               +   +++D         +D +L D PCS  GT+R++ DV     T + ++    Q 
Sbjct: 5   HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400
           ++  +G   +  GG VV+S CSL+  + E V+  +L  S   +EL  +++          
Sbjct: 65  RIATRGAEQLAEGGRVVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124

Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431
           I     ++ +G               +I P M                  +I        
Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184

Query: 432 GFFAVALRRLI-------QPK 445
           GFF   L +         QPK
Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205


>gi|195019305|ref|XP_001984952.1| GH16775 [Drosophila grimshawi]
 gi|193898434|gb|EDV97300.1| GH16775 [Drosophila grimshawi]
          Length = 449

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 128/373 (34%), Gaps = 35/373 (9%)

Query: 86  LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI 145
           L V+   +   D     +VD +   A     +     ++        +E + +       
Sbjct: 89  LDVAAEDLPVDDHLKQVIVDTSCGAALLRGAHIFAPGVLAMESNTQLQELVNVY------ 142

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205
           + +P   K      Y  +  + +    +      L    + E  +    AV +      +
Sbjct: 143 ADLPGKCKRGTATRYVCDEKIFLGVGQVQMQRHQLYKNNEKEESSPTGIAVRMQRNISGV 202

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
             L   +    G  + +       + + V++ G      +LD+CAAPG KT  +   +  
Sbjct: 203 PTL-GDLSDANGLLQNL------PSIVCVRVLGPQPGERILDMCAAPGNKTTHMAELMGD 255

Query: 263 GAKVTALDVSKRRLEKLRCN------LDRLHLYAEDIIEMDAFDYCPKKL------FDAV 310
              + ALD S  RL  ++        ++     A                      FD +
Sbjct: 256 VGTIVALDNSANRLRAMQSKLANYSCIETHQFDATKAWHAAGNGPSSGPPPFASDSFDRI 315

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCS  G   R       +    +      QR L+ Q +  ++PGGI+V+S C++ +
Sbjct: 316 LLDAPCS--GLGNRPQLCSNVKQAKVLQSYPHIQRNLMAQAVPLLRPGGILVYSTCTITE 373

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW---IRITPDMLEKIDGVS 427
            + E++V   LR  P    +          + +   LS E      R  P    ++  + 
Sbjct: 374 AECEQLVAWTLRKFPQLRLMDATPKLGAPGLPLHPELSAEQCALLQRFGPSAENRVPNL- 432

Query: 428 SGMDGFFAVALRR 440
               GFF    ++
Sbjct: 433 -DTVGFFIAKFQK 444


>gi|4490751|emb|CAB38913.1| proliferating-cell nucleolar antigen-like protein [Arabidopsis
           thaliana]
 gi|7271055|emb|CAB80663.1| proliferating-cell nucleolar antigen-like protein [Arabidopsis
           thaliana]
          Length = 682

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 99/317 (31%), Gaps = 85/317 (26%)

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------L 259
           E+I  LP + + + W  + S     +          L L    G  T Q           
Sbjct: 47  EAIKPLPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLETEAGNMTRQESVSMIMFISN 106

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------------- 306
            V   +V A DV  +R   L     R       +   +   +                  
Sbjct: 107 FVWLNQVVANDVDYKRSNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASETNPH 166

Query: 307 ------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD VL D PCS  GT+R+ PD+    ++         Q  L ++G+S +K GG 
Sbjct: 167 PIDQLLFDRVLCDVPCSGDGTLRKAPDIWRRWNSGSGNGLHSLQVVLAMRGLSLLKVGGR 226

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA---------------- 404
           +V+S CS++  + E VV ++LR     VELV ++    + I                   
Sbjct: 227 MVYSTCSMNPIEDEAVVAEILRRCGCSVELVDVSDKLPELIRRPGLTKWKVHDRGGWYRS 286

Query: 405 ----MALSPEGWIR-ITP-----------------------------------DMLEKID 424
                    +G +R + P                                   ++  +I 
Sbjct: 287 YKDVPKSQRDGVLRSMFPSGKSDKDSSGGKNSYEEMASISSDESAEEVCDLPLELCMRIL 346

Query: 425 GVSSGMDGFFAVALRRL 441
                  GFF   L ++
Sbjct: 347 PHDQNTGGFFIAVLHKV 363


>gi|300709045|ref|XP_002996691.1| hypothetical protein NCER_100191 [Nosema ceranae BRL01]
 gi|239606011|gb|EEQ83020.1| hypothetical protein NCER_100191 [Nosema ceranae BRL01]
          Length = 362

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 117/291 (40%), Gaps = 18/291 (6%)

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           +  +  +   +        I   YI L     + +    L         +          
Sbjct: 87  KFWKEKFESVKKENELFHVIKQKYIRLNTVKGVHSDISNLKLESTFIPNVYKLLEAVDFS 146

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALD 270
               + EG   +Q+ ++ +P  +   L N  ++D CAAPG KT+ L     +  KV A++
Sbjct: 147 KNKAYKEGKIVIQNIASCLPAYILDPLPNSRIIDACAAPGNKTSHLSNLLKNTGKVYAIE 206

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           V  +R + L  ++++L L   + I  D FD  P K  +   +    S +G+        +
Sbjct: 207 VDSKRFKILNYHVNKLGLKNVETINKDFFDIKPDKYSNIDYIVVDPSCSGSGMHD---FY 263

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            +D + I     FQ K+L   +SF      +V+S CSL K++ E+V+ +V++      E+
Sbjct: 264 EKDDERIKNLQKFQIKILKHALSFGAK--KIVYSTCSLHKEEGEDVINEVIK--DDKYEI 319

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             L   +   +   + +  + ++R        +   +    GFFA  L + 
Sbjct: 320 FDLAKIFDNGVFNGIEV-KDKFVRC-------VSTNNKETIGFFAALLVKK 362


>gi|198464825|ref|XP_001353377.2| GA10764 [Drosophila pseudoobscura pseudoobscura]
 gi|198149898|gb|EAL30884.2| GA10764 [Drosophila pseudoobscura pseudoobscura]
          Length = 438

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 25/232 (10%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT  +   +     V ALD S  R+ +    
Sbjct: 214 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHIAELMGDQGCVVALDNSASRV-RGMLG 272

Query: 283 LDRLHLYAEDIIEMDAF--------------DYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
               +  +      D+                  P   FD +L+DAPCS  G   R   +
Sbjct: 273 KLGNNYRSIQAHVFDSTKAVAASSDSSCPSAPPFPCASFDRILLDAPCS--GLGNRPQLL 330

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
              +    +      QR+LL Q +  ++PGGI+V+S C++ + + E +V   LR  P   
Sbjct: 331 CNIKQAKILKSYPNIQRRLLAQAVQLLRPGGILVYSTCTVTEAECESIVAWALRKYPELR 390

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            L          + +    + +  +     +     G      GFF    ++
Sbjct: 391 LLDATPRYGGPGLPLPDLETAQSKL-----LQRFGPGNDLDTVGFFIAKFQK 437


>gi|195160569|ref|XP_002021148.1| GL24972 [Drosophila persimilis]
 gi|194118261|gb|EDW40304.1| GL24972 [Drosophila persimilis]
          Length = 438

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 25/232 (10%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT  +   +     V ALD S  R+ +    
Sbjct: 214 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHIAELMGDQGCVVALDNSASRV-RGMLG 272

Query: 283 LDRLHLYAEDIIEMDAF--------------DYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
               +  +      D+                  P   FD +L+DAPCS  G   R   +
Sbjct: 273 KLGNNYRSIQAHVFDSTKAVAASSDSSCPAAPPFPCASFDRILLDAPCS--GLGNRPQLL 330

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
              +    +      QR+LL Q +  ++PGGI+V+S C++ + + E +V   LR  P   
Sbjct: 331 CNIKQAKILKSYPNIQRRLLAQAVQLLRPGGILVYSTCTVTEAECESIVAWALRKYPELR 390

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            L          + +    + +  +     +     G      GFF    ++
Sbjct: 391 LLDATPRYGGPGLPLPDLETAQSKL-----LQRFGPGNDLDTVGFFIAKFQK 437


>gi|330835316|ref|YP_004410044.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329567455|gb|AEB95560.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 311

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 31/301 (10%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTG----- 201
           +P W  ER+    G   +  +        ++ +  +K D +     L             
Sbjct: 32  LPRWIFERMYPLLGDNGMAGLYS---RRSWVRVNTLKGDRDEIIESLRVKGYSFSLDEDF 88

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQ 258
              L  +     S   F EG+   QD S++I V +       ++L++  +PGGK     Q
Sbjct: 89  DFLLNWISPKPSSTDEFREGLIIPQDKSSAIVVSVLNPKPGENILEIGGSPGGKTSLIQQ 148

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318
           +  + + V +LD+S++R+   R  L    +   D+I  D  ++   +  D +L+DAPCS+
Sbjct: 149 ITNNSSYVVSLDISEKRVNLQRRLLRLWGVENVDVILADGSNF-KVRKVDKILIDAPCSN 207

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           +GTI   P + +     ++ K    QR++L    S    G  +V+S CSL  ++ E+ V+
Sbjct: 208 SGTINVDPSIPFRLTKTELNKLVRIQREILKNAFS---SGVEIVYSTCSLFPEEGEKQVE 264

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +       V   P +  Y +S            +R  P + +          GFF   +
Sbjct: 265 -IYSKYLEKVTNDPAHFGYKRSKVWMRV------MRTYPSLDQSE--------GFFISKI 309

Query: 439 R 439
           +
Sbjct: 310 K 310


>gi|295084881|emb|CBK66404.1| tRNA and rRNA cytosine-C5-methylases [Bacteroides xylanisolvens
           XB1A]
          Length = 510

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 9/231 (3%)

Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
           P F  G ++VQ+AS+    Q+        + +LDLCAAPGGK+         G+ + A +
Sbjct: 92  PLFHAGCYYVQEASSMFVEQVLRQYVTGPVKMLDLCAAPGGKSTHARSVLPEGSLLVANE 151

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329
           V + R + L  NL +       +   D  D+      FD +L D PCS  G  R+ P  +
Sbjct: 152 VIRNRSQILAENLTKWGHPDVVVTNNDPADFAALPSFFDVILTDVPCSGEGMFRKDPVAV 211

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
               ++++      QR+++      +KPGG++++S C+ + ++ EE  + + +       
Sbjct: 212 EEWSSENVEICWQRQRRIIGDIWDTLKPGGVLIYSTCTFNTKEDEENARWIQQEYGAEPL 271

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            V +   +  + D+ +  + +G     P  +       +  +GFF VA R+
Sbjct: 272 TVQVQENWNITGDL-LPDNCDGSKSSIP--VYHFFPHKTKGEGFFLVAFRK 319


>gi|171688496|ref|XP_001909188.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944210|emb|CAP70320.1| unnamed protein product [Podospora anserina S mat+]
          Length = 914

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 81/242 (33%), Gaps = 61/242 (25%)

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------------PKKLFDAVL 311
            + A D   +R   L   L RL      +   DA  Y                  FD +L
Sbjct: 275 MLIANDADYKRSHMLIHQLKRLSSPNMIVTNHDATMYPALRIPNPENPTKPNYLKFDRIL 334

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R++ ++         +     Q ++L++ +  +KPGG VV+S CS++  
Sbjct: 335 ADVPCSGDGTLRKNVNLWKDWTPGSALGLHLTQVRILVRALQMLKPGGRVVYSTCSMNPV 394

Query: 372 DSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT---------- 416
           ++E VV   +     P  +E++  ++      +   M      +   R+           
Sbjct: 395 ENESVVAAAIERCGGPDKIEILDCSNELPGLQRKPGMRKWQIMDKSERLWNTWQEVEEYT 454

Query: 417 --------P---------------------DMLEKIDGVSSGMDGFFAVALRR----LIQ 443
                   P                     D   ++        GFF  AL +      +
Sbjct: 455 KSTEDGVTPSRLVESMFPPAEGSDCADLPLDRCMRVYPHQQDTGGFFITALHKKAEFKAK 514

Query: 444 PK 445
           P+
Sbjct: 515 PE 516


>gi|126465167|ref|YP_001040276.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1]
 gi|126013990|gb|ABN69368.1| Fmu (Sun) domain protein [Staphylothermus marinus F1]
          Length = 415

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 144/421 (34%), Gaps = 60/421 (14%)

Query: 60  LPRIDAVLDFVLI-----SSLPRKKYSLQQLLRV----SVAQILYL------------DV 98
              ++ +L   +       ++  K    +  LR+        I Y               
Sbjct: 15  KRLLNYILKAHISYDKAFRTIIHKYSFPRWALRIFYKVGYYTINYYYSLRWLSAKNGYGT 74

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
               +++   +     +  R   K     L R  R        I+ +   PE+  + L N
Sbjct: 75  KPAGIINYFSKIGFSIRRARSLIKDEVKQLSRTKR--------ISLLHSYPEFLVKDLLN 126

Query: 159 FYGKERVLAISDACI-SPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELP------- 209
              ++ +  +         ++ +  +K   E     L+   +        +         
Sbjct: 127 HMSEKELDKMLKNLNVRKRWLRINTLKISYEDAYKCLDETGIIYQKKDFPKYMVYVEHPK 186

Query: 210 -ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAK 265
            + I        G    QD +++  V+      +   LD C+APG K      L  +   
Sbjct: 187 WDPIGHNKCVKNGFIIPQDLASAYVVEALELEEDKYFLDACSAPGLKYSLAFMLTNNKLY 246

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
             A+D+S +R+   +  L RL + +   I    D+ +    ++FD  LVDAPCS  G + 
Sbjct: 247 GFAIDLSSKRISIEQTLLKRLGVDSIRTILINADSRNIKLSRVFDYALVDAPCSGLGAVY 306

Query: 324 RHPDVLWTRDTDDI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
             P V    +      +    Q ++L   + + +    VV++ CS+   + E+V+++++ 
Sbjct: 307 SDPAVKLNTNRRSKLEQYHKKQYRILKNILRYAR---RVVYATCSIHPLEGEKVIERIV- 362

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR-RL 441
            +    E V +N     +      +S     R+ P  +           GF+   L  ++
Sbjct: 363 -NEGLAETVKINLPGLSTAYKGFNIS-NSTYRVLPHTMNSQ--------GFYIAVLESKV 412

Query: 442 I 442
            
Sbjct: 413 A 413


>gi|225468184|ref|XP_002271053.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 834

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 33/215 (15%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271
              Q+A + +P        +  VLD+CAAPG KT Q             + G  V A DV
Sbjct: 163 ITRQEAVSMVPPLFLDVSPDHFVLDMCAAPGSKTFQLLEIIHRSTKPGTLPGGMVVANDV 222

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------------------PKKLFDA 309
             +R   L     R+      +   +A  +                        + +FD 
Sbjct: 223 DVKRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNKLSSDSSEIGVVKEQSMSQLMFDR 282

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL D PCS  GT+R+ PD+    +        C Q ++ ++GIS +K GG +V+S CS++
Sbjct: 283 VLCDVPCSGDGTLRKAPDIWRKWNVGMGNGIHCLQVQIAMRGISLLKVGGRMVYSTCSMN 342

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
             ++E VV ++LR     VELV ++    + +   
Sbjct: 343 PVENEAVVAEILRRCGGSVELVDVSCELPQLVRRP 377


>gi|309805044|ref|ZP_07699100.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165635|gb|EFO67862.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 09V1-c]
          Length = 246

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 5/244 (2%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKISYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRS 383
           +++ 
Sbjct: 241 LMKE 244


>gi|167533692|ref|XP_001748525.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773044|gb|EDQ86689.1| predicted protein [Monosiga brevicollis MX1]
          Length = 789

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 102/287 (35%), Gaps = 74/287 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------LIVSGAKVTALDVSKRR 275
              Q+  + +PV       +  VLD+CA+PG KT Q          +   V A DV  +R
Sbjct: 153 LSRQEVVSMLPVAFLNIEPHHRVLDMCASPGSKTTQALEALHAQGNASGFVMANDVDAKR 212

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK------------LFDAVLVDAPCSSTGTIR 323
              L   L  L    + ++                        FD ++ D PC   GT+R
Sbjct: 213 AYILVRRLAPLGPACQKLVVTQHKAQKYPSLSHEREDRYLRGSFDRIICDVPCCGDGTLR 272

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + PD+         +     Q ++ ++G+S ++PGGI+V+S C+ +  + E VV  +L+ 
Sbjct: 273 KSPDMWRRWHPGFAIGLHTLQLQIAMRGLSLLRPGGIMVYSTCTFNPLEDEAVVAALLQK 332

Query: 384 SPIPVELVPLNSA----------------------------------------------Y 397
               VELV  +                                                +
Sbjct: 333 CGGAVELVDCSGRHPDLARRPGVYSWKVYDDDMREFPDFAATQHDSVSPNTRKIMRPTMF 392

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
             S D+A +L  E  +R  P + +          GFF   LR+  +P
Sbjct: 393 PPSPDVAESLCLERCMRFYPHLQD--------TGGFFVAVLRK-TKP 430


>gi|15489014|gb|AAH13625.1| Nsun2 protein [Mus musculus]
          Length = 521

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 41/201 (20%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
               +   + +D         +D +L D PCS  GT+R++ DV     T + ++    Q 
Sbjct: 5   HDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400
           ++  +G   +  GG +V+S CSL+  + E V+  +L  S   +EL  +++          
Sbjct: 65  RIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLEKSEGALELADVSAELPGLKWMPG 124

Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431
           +     ++ +G               +I P M                  +I        
Sbjct: 125 VSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTDLEKLQAMHLERCLRILPHHQNTG 184

Query: 432 GFFAVALRRLI-------QPK 445
           GFF   L +         QPK
Sbjct: 185 GFFVAVLVKKAPMPWNKRQPK 205


>gi|313673239|ref|YP_004051350.1| fmu (sun) domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939995|gb|ADR19187.1| Fmu (Sun) domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 441

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 122/277 (44%), Gaps = 19/277 (6%)

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIP 233
           Y  L    D++      +  + PT    +    E    I +   F  G  ++Q+ S+ IP
Sbjct: 31  YFRLNKARDVDYLKELNSYKISPTDIPNVFSYDEPNEIITNTISFLTGGIYIQNPSSVIP 90

Query: 234 VQLFG--TLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
             +      NN  VLD+ AAPGGKT    +       + A + S  RL+ L  NL++   
Sbjct: 91  PMILSELLGNNGVVLDVAAAPGGKTTALSEFSNRNMTIIANEPSSSRLKSLNFNLEKYGA 150

Query: 289 YAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +  + I  D      K    FD +L+DAPCS+   I    ++      D + K    Q++
Sbjct: 151 WNVNTISFDGRVLHKKLPQIFDGILLDAPCSNENKIGYSEEINKNWSIDLLNKMKKLQKE 210

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           ++L  +  +KPGG +++S C+   +++E+ ++++L+ +    EL+ +N   +        
Sbjct: 211 IILSVLQLLKPGGFLIYSTCTFSIEENEQNIEEILKEN-SDFELIDINKNRFTKGISGNI 269

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              +  IR+ P   E         DGFF   L++  +
Sbjct: 270 ALDDKIIRVLPHKSEY--------DGFFIAGLKKKGE 298


>gi|307198376|gb|EFN79318.1| Putative methyltransferase NSUN6 [Harpegnathos saltator]
          Length = 442

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
           Q+  + +   +       ++LD+CAAPG KT  +         +   ++   K+    ++
Sbjct: 215 QNLPSIVCSLVLNPQPGETILDMCAAPGNKTTHISYLMRGQGMIIALEKNPGKVARLREK 274

Query: 286 LHLYAEDIIEMD----------------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
            +     I   D                     P+  FD +L+D PCS+ G   + P + 
Sbjct: 275 CNDGNVKIFCCDAANAVVGQEQDSVRATDGPPFPEDHFDRILLDTPCSALG---QRPQLS 331

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
               +  +      QR+L    +  +KP G +V+S C++   ++E +V   L+  P  +E
Sbjct: 332 NAITSVQLRSYVPLQRRLFFAAVRLLKPRGTLVYSTCTVTIAENEGIVAWALKRFP-QLE 390

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L  +              +  G        + +    S  + GFF   L++
Sbjct: 391 LESIEERIKTDRYGTRGYTVNGLADKDAKKVRRFGPESDSV-GFFIACLKK 440


>gi|320100535|ref|YP_004176127.1| ribosomal RNA methyltransferase NOP2 [Desulfurococcus mucosus DSM
           2162]
 gi|319752887|gb|ADV64645.1| ribosomal RNA methyltransferase NOP2 [Desulfurococcus mucosus DSM
           2162]
          Length = 344

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 121/326 (37%), Gaps = 35/326 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----------DIETWAHK 192
           A       +  +R  +  G    + + +A   P+   +               +E+   +
Sbjct: 25  ALEYGYLPYMVQRYIDMLGPREAVELLEAFEKPVRQVVRANTLLVEPGELKTRLESLGFR 84

Query: 193 LNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDL 248
           L  +    G   + E P S  I S   + +G ++V   + S+   L   G      VLD 
Sbjct: 85  LEEIPWAPGSFWVAEAPRSPSIGSTHEYLKGFYYVHRDATSLIPVLLLLGDGYKGDVLDA 144

Query: 249 CAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           CAAPGGK            G  V A D    RL+ L  ++ R+ L    +   +A +   
Sbjct: 145 CAAPGGKATFTAQILKERGGGTVYANDYVLYRLKSLIGHVLRMKLDNIVVTWGNAAELPG 204

Query: 304 --KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + F  +L+DAPCS  G I   P         D+      + +LL   I  +   G++
Sbjct: 205 RVGRRFKRILLDAPCSGEGRISVDPGRKTRTSILDLAIMVKREVELLGSLIDMLDEEGVI 264

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------EGWIRI 415
            +S CS+  +++E VV K+L S        P    +  S  +    S       E  IRI
Sbjct: 265 AYSTCSIAPEENEYVVAKILESRRDVEVADPGPLPFNHSRWLTSYRSMEYPRELEKCIRI 324

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P           G+ GF    L+R+
Sbjct: 325 WPH--------RHGLFGFTTCLLKRV 342


>gi|295094814|emb|CBK83905.1| NOL1/NOP2/sun family. [Coprococcus sp. ART55/1]
          Length = 370

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299
           VLD+CAAPGGK+ +    +     + + D+S  R + L  NL+   +    ++    +  
Sbjct: 15  VLDICAAPGGKSTELAAKLNGTGILISNDISNSRAKALLKNLELFGIGNMCVVSEPPNNL 74

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               +  FD +L+DAPCS  G  R+   ++   + +     A  QR +L +    +KPGG
Sbjct: 75  SKAFEGTFDKILIDAPCSGEGMFRKSSSMMTAWENNGTELFAGLQRGILNEVCKMLKPGG 134

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRI 415
            +++S C+   ++ E  V+ +L        +       +   + A   +         R+
Sbjct: 135 KLLYSTCTFSPEEDERSVEYLLSIDDSMHLVDFPKYEKFDDGNPAWGETGNPELVKCSRL 194

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
            P  ++          G F     +
Sbjct: 195 WPHHVKGE--------GHFIALFEK 211


>gi|78355169|ref|YP_386618.1| NOL1/NOP2/sun family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217574|gb|ABB36923.1| NOL1/NOP2/sun family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 429

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 14/253 (5%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +     +     RL + P  + S      G+ ++QD S+ +P       N  +VLD+CA+
Sbjct: 32  EFEPEPVSPWTRRLTKEPRPLGSSLAAFFGLIYIQDRSSMLPPLALAPQNGDAVLDMCAS 91

Query: 252 PGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLF 307
           PG KT  L         V   + + +RL  LR NL  L+L               P   +
Sbjct: 92  PGSKTGFLAQLAGPDGFVMGNEPNAQRLATLRQNLFNLNLPHTATCGYAGESLPLPDASW 151

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
             + +D PCS  GT+ ++P+V+     D +      QR LL +    + PGG+VV+S C+
Sbjct: 152 QKIQLDPPCSGWGTVDKNPNVMKLWQGDKVKPLVGIQRLLLREAARLLAPGGVVVYSTCT 211

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
            + Q++EE V+   +   + +   PL        +  +    EG +R+        D   
Sbjct: 212 TNVQENEEQVRWATQE--LGLIPEPLAPFEGFVFEDPLLPGCEGTLRV--------DASR 261

Query: 428 SGMDGFFAVALRR 440
           S   GF+    R+
Sbjct: 262 SSAQGFYIARFRK 274


>gi|218884374|ref|YP_002428756.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765990|gb|ACL11389.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus
           kamchatkensis 1221n]
          Length = 386

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
            I  L  + +G+ + Q   + +  ++        ++D+ A+PGGKT+ ++     GA++ 
Sbjct: 159 RISELDIYKQGLLYPQGYPSIVTTRVLDPRPGELIVDMNASPGGKTSHIVQLTKGGARII 218

Query: 268 ALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKK----LFDAVLVDAPCSSTGTI 322
           A+D S  ++ +L+ NL  L L      I  D+             D VL+D PCS+ G  
Sbjct: 219 AIDRSPGKIAELKNNLSNLDLDLNVIAIPHDSRYLHYDFSLLGKVDKVLIDPPCSNLGV- 277

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
              P +L  R   D+   + +QR+ L      VKPGG +V+S C+L  +++EE +   + 
Sbjct: 278 --RPRLLENRSYKDVENLSSYQRQFLKTAALIVKPGGYIVYSTCTLTLEENEENILYAVE 335

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +    +P N  Y          + +G I        +   ++  M G F   L+R
Sbjct: 336 ELGLECVELPENPPYTDKT------TYKGMI------GYRYTPLNMDMPGHFIAVLKR 381


>gi|116196510|ref|XP_001224067.1| hypothetical protein CHGG_04853 [Chaetomium globosum CBS 148.51]
 gi|88180766|gb|EAQ88234.1| hypothetical protein CHGG_04853 [Chaetomium globosum CBS 148.51]
          Length = 889

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 61/242 (25%)

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVL 311
            + A D   +R   L   L RL      +   DA  Y                  FD +L
Sbjct: 242 MLIANDADYKRSHMLIHQLKRLSSPNMIVTNHDATMYPSLRIPNPENPSKPNYLKFDRIL 301

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R++ ++       + +     Q ++L++ +  +KPGG VV+S CS++  
Sbjct: 302 ADVPCSGDGTLRKNVNLWKDWTPGNALGLHLTQVRILVRALQMLKPGGRVVYSTCSMNPV 361

Query: 372 DSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT---------- 416
           ++E VV   +     P  +E++  +       +   +      +   R+           
Sbjct: 362 ENESVVAAAIERCGGPDKIEILDCSDQLPLLKRKPGLRKWQIMDKSARLWNSWEEVEEYV 421

Query: 417 --------PDML---------------------EKIDGVSSGMDGFFAVALRR----LIQ 443
                   P  L                      ++        GFF  AL++      +
Sbjct: 422 KSTEDGIIPGRLVESMFPPSASSDCADLPLERCMRVYAHQQDTGGFFITALQKKEEFKAK 481

Query: 444 PK 445
           P+
Sbjct: 482 PE 483


>gi|308159208|gb|EFO61751.1| Sun/nucleolar protein family protein [Giardia lamblia P15]
          Length = 742

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 115/344 (33%), Gaps = 33/344 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII--PEWFKERL 156
            D  +V      +KR   +        S +    R  +        +     P     R+
Sbjct: 20  PDEKIVIEEPG-SKRCGRDCTPVNPKASRITNYYRRILSATDMELYLEYFVRPLPTTFRV 78

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKF------DIETWAHKLNAVMLPTGGIRLKELPE 210
              +  +   +        L+     +       D +     L  +    GG        
Sbjct: 79  SAAHKPQTFQSRYSNQFGVLFHRFATEEQEASGLDSKQRELTLQKLPWIPGGWMFTADKR 138

Query: 211 SIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258
            I     +                  Q+A + IP          +V D+CAAPG KT Q 
Sbjct: 139 VIRLSERYRRLHSFINLQHEAGFIVRQEAVSMIPPIFLQARAGEAVFDVCAAPGSKTLQL 198

Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVD 313
              +     + A D   +R   L  N   + + +  I   DA  Y       LFD +L D
Sbjct: 199 LEDVGPTGLLMANDADLKRCYVLVHNTITVAMPSLVITNCDASRYPSLPGGMLFDKILAD 258

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  GT+R+ PD+         +     Q ++LL+ +  +K GG +V+S CSL+  ++
Sbjct: 259 VPCSGDGTLRKAPDIWPRWSPHGGLSLHPLQLRILLRSLQLLKVGGTIVYSTCSLNPIEN 318

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           E VV   L+     +E++ ++      +           +   P
Sbjct: 319 EAVVASALQICQGSLEVLDVSHIAPSLLRSP-------GLTTWP 355


>gi|115492151|ref|XP_001210703.1| hypothetical protein ATEG_00617 [Aspergillus terreus NIH2624]
 gi|114197563|gb|EAU39263.1| hypothetical protein ATEG_00617 [Aspergillus terreus NIH2624]
          Length = 883

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 117/396 (29%), Gaps = 115/396 (29%)

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           ERL+++Y  E      +         +    D   W+      ++             + 
Sbjct: 77  ERLKDYYVPEITSIQYEGNFVEPPRPVPWYPDQLAWSMTTPKQVVRRFAPFASFQKFLVA 136

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------- 264
                  G    Q+  + IP  L      ++VLD+CAAPG K+AQL+             
Sbjct: 137 ETE---VGNISRQEVVSMIPPLLMDLKPGMTVLDMCAAPGSKSAQLMEMIHAGEEEAMLE 193

Query: 265 ----------------------------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                                        + A D   +R   L   + RL+     +   
Sbjct: 194 VSKQVKAGTAGPEPLGPEGLNDDGRTTGLLIANDADYKRAHMLIHQMKRLNSPNLIVTNH 253

Query: 297 DAFDYCPKK--------------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
           DA  Y   K               FD +L D PC+  GT R++  V       + +    
Sbjct: 254 DATLYPSIKLPQRPEDKGIQRYLKFDRILADVPCTGDGTARKNWGVWREWGPANALGLHP 313

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE------------- 389
            Q ++L++ +  +K GG VV+S CS++  ++E V+   +       +             
Sbjct: 314 TQVRILVRALQMLKVGGRVVYSTCSMNPLENEAVIASAIERCGGGAKVRIVDCSNELPGL 373

Query: 390 ------------------------------------LVPLNSAYWKSIDMAMALSPEGWI 413
                                               L  +    +        L  E  +
Sbjct: 374 KRAPGLRSWKVMDRENRMWNSWKEIEEQREREGISGLGRIAEGMFPPTGENADLPLERCM 433

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL----IQPK 445
           R+ P M +          GFF   L +L     +P+
Sbjct: 434 RVYPHMQD--------TGGFFITVLEKLSEIRAKPE 461


>gi|290982781|ref|XP_002674108.1| predicted protein [Naegleria gruberi]
 gi|284087696|gb|EFC41364.1| predicted protein [Naegleria gruberi]
          Length = 692

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 91/263 (34%), Gaps = 53/263 (20%)

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ------------LIVSGAKVTALDVSK------ 273
            P+       +  VLD+CAAPG KT+Q                   V A D         
Sbjct: 181 PPLMFTNWKPSDKVLDMCAAPGSKTSQLVELLYQSSGGDSKNISGFVIANDNDVKRAYLL 240

Query: 274 -RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
             +L++L      L +   D  +   F   PK  FD VL D  CS  GTIR+ P V    
Sbjct: 241 VHQLQRLNFLFPHLMITNHDATKYPQFTTEPKLKFDKVLCDIMCSGDGTIRKSPQVWRQW 300

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             +        Q   +L+    +  GG +V+S C+L+  + E VV +++R +   + L  
Sbjct: 301 KANMGHGLHKLQVDCVLRAFDMLNVGGEIVYSTCTLNPIEDEAVVAEIIRRTKGKLVLQD 360

Query: 393 LNSAYW----KSIDMAMALSPEGWIRITP-----------------------------DM 419
           L+S Y     K       ++ +    + P                               
Sbjct: 361 LSSRYPSLKYKPGMTNWVVTSKKG-ELLPSFEYARKYNSDNRITESEFAKDDVKDMNMHY 419

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
             +I    +   GF+    +++ 
Sbjct: 420 TMRILPNQNNTGGFYIAHFKKVA 442


>gi|188995392|ref|YP_001929644.1| hypothetical protein PGN_1528 [Porphyromonas gingivalis ATCC 33277]
 gi|188595072|dbj|BAG34047.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 468

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 109/288 (37%), Gaps = 22/288 (7%)

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGF 218
              A   A  SP  + +    +       +  +                   S  + P F
Sbjct: 19  ETEAFFAALDSPAPVSIRRNPNKPGIGTTVMDLPTNKSVPWCPLGTYLAERPSFTNDPVF 78

Query: 219 AEGVWWVQDASASIPVQLFGT--LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSK 273
             G ++VQ+AS+    QL      + +  LDLCA+PGGK      ++  G+ + + +V  
Sbjct: 79  HAGGYYVQEASSMFLWQLKPLLGESPVRALDLCASPGGKSTLLTNILPEGSVLVSNEVIH 138

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
            R   L  N+ +       + E D        + FD +LVDAPCS  G  R+        
Sbjct: 139 HRANILAENMIKWGYPTGIVTEADPDRLKSAGETFDFILVDAPCSGEGMFRKDEATRSEW 198

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              ++   A  Q+++L      ++PGG++ +S C+ +  ++E+ +  ++ +       + 
Sbjct: 199 SLQNVELCARRQQRILSAAWEMLQPGGLLAYSTCTFNTLENEDNLVFLIDTFGAEPVALD 258

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + + +  +  +          R  P  +           GFF   +R+
Sbjct: 259 VLTEWQIAPQLK---GEAPAYRFFPHKVAGE--------GFFFCLVRK 295


>gi|224013848|ref|XP_002296588.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968940|gb|EED87284.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 531

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 113/392 (28%), Gaps = 68/392 (17%)

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAISDACIS 174
           +         I  +  R        I   S +PE                   I  +  S
Sbjct: 48  DGSTHHHDECISHQRLRISSLFETYIRTQSWLPERDIYSFFAALRRPLPVCFRIRSSRAS 107

Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL---PGFAEGVWWVQDASAS 231
             +  +   F +    H++ A                 +         +G    Q+  + 
Sbjct: 108 DEWDTICKIFHLHDAVHRVPADANAYQMPSYFLENYPRLRHWLSTSTLKGDISRQEYVSM 167

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLI----------------VSGAKVTALDVSKRR 275
           IPV L    +    LDLCA+PG KT Q +                     V A ++  +R
Sbjct: 168 IPVHLLNIQSQHKTLDLCASPGSKTIQAMDALYASCDDKTTSSSTPPTGFVMANELDAKR 227

Query: 276 LEKLRCNLD-----RLHLYAEDIIEM----------DAFDYCPKKLFDAVLVDAPCSSTG 320
              L          R+   A                        K +D ++ D PCS  G
Sbjct: 228 AYVLAHRSRDTLQGRMASMAVVTHNACKFPNVLAPCRRTQDPSDKPYDRIICDVPCSGDG 287

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
           T+R+   V  T      ++    Q ++  +GI+ +K GG + +S CS    ++E VV  +
Sbjct: 288 TLRKDFKVWKTWHPSYGIQLHSLQVRIAKRGIALLKIGGYMTYSTCSFHPIENEAVVAAL 347

Query: 381 LRSS-------------------------------PIPVELVPLNSAYWKSIDMAMALSP 409
           L +                                    E V +++   +          
Sbjct: 348 LATRCVELVNAEELVGKSGMQGIRCRGGLDTWKVLNDDCEEVNVDARPKEWPSSLWPPKQ 407

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            G  +       ++    +   GFF   L+++
Sbjct: 408 VGIAKSL-SKCIRMVPQDNDTGGFFIALLKKV 438


>gi|325912622|ref|ZP_08175005.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 60-B]
 gi|325478043|gb|EGC81172.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 60-B]
          Length = 246

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 5/244 (2%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204
           +  IP  F ++  +  G++    +  A          +      + +    +      I 
Sbjct: 1   MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
                E   +   +  G  + QD SA  P  +        VLDLCAAPGGK+  +     
Sbjct: 61  NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319
           +   + A ++S +R ++LR NL++       I     +      K  FD ++VDAPCS  
Sbjct: 121 NEGILVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           G  R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  
Sbjct: 181 GMFRKSDDAIRYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240

Query: 380 VLRS 383
           +++ 
Sbjct: 241 LMKE 244


>gi|227827996|ref|YP_002829776.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25]
 gi|229585265|ref|YP_002843767.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27]
 gi|238620224|ref|YP_002915050.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4]
 gi|227459792|gb|ACP38478.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25]
 gi|228020315|gb|ACP55722.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27]
 gi|238381294|gb|ACR42382.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4]
          Length = 339

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 42/235 (17%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269
           +  L     G+ +VQ  ++     L     N  ++D+ A  GGK   +     +V     
Sbjct: 141 LADLSELKNGLIYVQGKASMYVAHLLDPQPNEKIVDMTAYAGGKLTHIYQLEPRVKLIGF 200

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326
           D +++++EKLR  ++++ +   +I + D+            D V++D PCS+ G     P
Sbjct: 201 DHTEKKVEKLRDLVNKMGMR-IEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGI---RP 256

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   +   DI+    +Q++ L      +K  G+V++S C++   ++E+V+         
Sbjct: 257 KLYDKKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 309

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                S E  IR  P +          + GFF   L + 
Sbjct: 310 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 338


>gi|242778522|ref|XP_002479256.1| methyltransferase (Ncl1), putative [Talaromyces stipitatus ATCC
           10500]
 gi|218722875|gb|EED22293.1| methyltransferase (Ncl1), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 909

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 77/243 (31%), Gaps = 72/243 (29%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------LFDAVLV 312
            A D   +R   L   + RL+     +   DA  Y   K               FD VL 
Sbjct: 238 VANDSDFKRAHMLVHQMKRLNSPNLIVTNHDATFYPSIKLPSPTGEKQPNVYLKFDRVLA 297

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  GT R++P++         +     Q ++L++ +  +K GG VV+S CS++  +
Sbjct: 298 DVPCSGDGTTRKNPNIWSDWSPASALGLHATQMRILVRALQMLKVGGRVVYSTCSMNPIE 357

Query: 373 SEEVVQKVLRSSPIP--VELVPLNSAYWKS------------------------------ 400
           +E V+   +        VE++  +                                    
Sbjct: 358 NESVIAAAIERCGGSSHVEIIDCSKELPDLKRVNGLHTWKVMDRDGRIWNSWEEVEEYRE 417

Query: 401 --------------IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL----I 442
                               +  E  +R+ P + +          GFF   L +      
Sbjct: 418 TQGITGLGRLAATMFPPTEDVHLERCMRVYPHLQD--------TGGFFITVLEKKKEIRA 469

Query: 443 QPK 445
           +P+
Sbjct: 470 KPE 472


>gi|227830733|ref|YP_002832513.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15]
 gi|229581707|ref|YP_002840106.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998246|ref|YP_003420014.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227457181|gb|ACP35868.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15]
 gi|228012423|gb|ACP48184.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446142|gb|ADB87644.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5]
 gi|323475086|gb|ADX85692.1| Fmu (Sun) domain protein [Sulfolobus islandicus REY15A]
 gi|323477818|gb|ADX83056.1| Fmu (Sun) domain protein [Sulfolobus islandicus HVE10/4]
          Length = 339

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 42/235 (17%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269
           +  L     G+ +VQ  ++     L     N  ++D+ A  GGK   +     +V     
Sbjct: 141 LADLSELKNGLIYVQGKASMYVAHLLDPQPNEKIVDMTAYAGGKLTHIYQLEPRVKLIGF 200

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326
           D +++++EKLR  ++++ +   +I + D+            D V++D PCS+ G     P
Sbjct: 201 DHTEKKVEKLRDLVNKMGMR-IEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGI---RP 256

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   +   DI+    +Q++ L      +K  G+V++S C++   ++E+V+         
Sbjct: 257 KLYDKKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 309

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                S E  IR  P +          + GFF   L + 
Sbjct: 310 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 338


>gi|312131817|ref|YP_003999157.1| fmu (sun) domain protein [Leadbetterella byssophila DSM 17132]
 gi|311908363|gb|ADQ18804.1| Fmu (Sun) domain protein [Leadbetterella byssophila DSM 17132]
          Length = 447

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 119/304 (39%), Gaps = 27/304 (8%)

Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKFDIETWAHKLNAVMLPTGGIR 204
             +P  F   ++   G E               I L      +     L  +     G  
Sbjct: 1   MKLPIDFVTEMQAQLGSEFPDFEKALQEETPVSIRLNPAKTYDFPFQNLENIPWTPAGRY 60

Query: 205 LKELPESIVSL-PGFAEGVWWVQDASASI----PVQLFGTLNNLSVLDLCAAPGGKTAQL 259
           L      I +L P F  G ++VQ+AS+ I      +       L VLDLCAAPGGKT  L
Sbjct: 61  L--KERPIFTLDPAFHAGAYYVQEASSMIVEEIFKKHVPADKPLRVLDLCAAPGGKTTHL 118

Query: 260 IV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAP 315
                    + A +V K R+  L+ NL +       + + D   +   +  FD VLVDAP
Sbjct: 119 ASLLGPEDLLVANEVIKSRVSILKENLLKWGYPNVIVSQQDPETFSDLEGFFDVVLVDAP 178

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G  R+ P+       +++   +  Q+++L      V P G++++S C+ +K++++E
Sbjct: 179 CSGEGMFRKTPEATEEWSLNNVELCSARQKRILSAAAMLVAPDGLLLYSTCTYNKKENQE 238

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
               +          +   +   +  +    +  +  ++  P  L+          GF+ 
Sbjct: 239 NGLWL-------TRTLDFEAISLEMPEEWGIVKTDFGLQFYPHRLKGE--------GFYI 283

Query: 436 VALR 439
            A R
Sbjct: 284 SAFR 287


>gi|253745421|gb|EET01363.1| Sun/nucleolar protein family protein [Giardia intestinalis ATCC
           50581]
          Length = 753

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 17/233 (7%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLN 241
           L  +    GG         I     +                  Q+A + IP        
Sbjct: 121 LQKLPWIPGGWMFTADKRIIRLSEKYKRLHSFINLQHEAGFIVRQEAVSMIPPVFLQACT 180

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
             +VLD+CAAPG KT Q    +     + A D   +R   L  N   + + +  I   DA
Sbjct: 181 GEAVLDVCAAPGSKTLQLLEDVGPTGLLIANDADLKRCYVLVHNTITVSMPSLVITNCDA 240

Query: 299 FDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
             Y       LFD VL D PCS  GT+R+ PD+         +     Q ++LL+ +  +
Sbjct: 241 SRYPSLLGGILFDKVLADVPCSGDGTLRKAPDIWHRWSPHGGLSLHPLQLRILLRSLQLL 300

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
           K GGI+V+S CSL+  ++E VV   L+     +E++  +             +
Sbjct: 301 KVGGIIVYSTCSLNPIENEAVVAAALQICQGSLEVLDASHIAPSLARSPGLAT 353


>gi|229579627|ref|YP_002838026.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010342|gb|ACP46104.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14]
          Length = 339

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 42/235 (17%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269
           +  L     G+ +VQ  ++     L     N  ++D+ A  GGK + +     +V     
Sbjct: 141 LADLSELKNGLIYVQGKASMYVAHLLDPQPNEKIVDMTAYAGGKLSHIYQLEPRVKLIGF 200

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326
           D +++++EKLR  ++++ +   +I + D+            D V++D PCS+ G     P
Sbjct: 201 DHTEKKVEKLRDLVNKMGMR-IEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGI---RP 256

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   +   DI+    +Q++ L      +K  G+V++S C++   ++E+V+         
Sbjct: 257 KLYDKKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 309

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                S E  IR  P +          + GFF   L + 
Sbjct: 310 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 338


>gi|301608151|ref|XP_002933655.1| PREDICTED: putative methyltransferase NSUN5-like [Xenopus
           (Silurana) tropicalis]
          Length = 492

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 162/456 (35%), Gaps = 44/456 (9%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           M     ++ +L  + RK  ++  L+      +  +         + A+V  TLR+   ++
Sbjct: 1   MAVYQTAAGILEKLQRKEGAVKTLVYDSGFKNVRQ---------LYALVCETLRYASVLE 51

Query: 65  AVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
            ++    L+    +   SL ++L   V  +L+           AV    + +     A+L
Sbjct: 52  DIITSSQLLRGTKKLPLSLAKVL---VYDLLFGKGLQCGGRWKAVILGHKARLRAELARL 108

Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183
                   + + +  L   A    +P + +         +    +        Y  L   
Sbjct: 109 KVKKKVSSNEDLVTSLGGGAVGPALPRYVRVNPIKTCLND----VIAYFKRRGYTYLGKA 164

Query: 184 FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
             IE  A                           +     +  G   +QD ++ +P  L 
Sbjct: 165 RSIEELAELGQKSGKRFLQDLHVPDLLAFPPGTDLHKDSLYTAGHLILQDKASCLPALLL 224

Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
                  V+D CAAPG KT+Q   ++ +  K+ A D+  +RL  +   L R  +  +++ 
Sbjct: 225 APPVGSCVIDACAAPGNKTSQLAAMLQNKGKLFAFDLDTKRLATMSTLLLRAGVTCQELA 284

Query: 295 EMDAFDYCPKKLFD----AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS---ACFQRKL 347
             D     P+         +LVD  CS +G   +   +    ++    +    + FQR+ 
Sbjct: 285 NQDFLTVSPEDPKYQKVSHILVDPSCSGSGIPDQMRILADKEESAQSERLEALSGFQRRA 344

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           L   +SF      VV+S CS+ +Q++EEVV+ +L   P    +  L S  W    + +  
Sbjct: 345 LSHALSFPSVQ-RVVYSTCSIHQQENEEVVRDILEQHPHFSLIDALPS--WPMHGLNIFP 401

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                +R             +  +GFF    +R  +
Sbjct: 402 GSSCCLR--------ATLSDTLTNGFFVAVFQRQKK 429


>gi|159480252|ref|XP_001698198.1| hypothetical protein CHLREDRAFT_41764 [Chlamydomonas reinhardtii]
 gi|158273696|gb|EDO99483.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 221

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 83/230 (36%), Gaps = 21/230 (9%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
             +Q  ++ +P          +V+D CAAPG KT     ++ +  +V A D   +RL +L
Sbjct: 1   VVLQSKASCMPAHALSPAPGWTVVDCCAAPGNKTTHLAAIMRNKGRVIAFDKDPKRLARL 60

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVLWTRD-- 333
           + N +R           D     P          VL+D  CS +GT     D   +    
Sbjct: 61  KANAERTGASCVQARLQDFLSIDPTDPEFGQVRGVLLDPSCSGSGTTFTRLDHFGSLKGS 120

Query: 334 ---TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                 + + A FQ   L   + F      +V+S CS+   ++E VV   L  +      
Sbjct: 121 RVEAARVAQLARFQATALSHALRFPALE-RLVYSTCSVHVAENEAVVAGALAQAAEAGLE 179

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +      W    + +    E  +R         D    G DGFF    +R
Sbjct: 180 LADPFPAWHRRGLPLFPGAEKLVRT--------DAYLDGTDGFFVAVFQR 221


>gi|222622433|gb|EEE56565.1| hypothetical protein OsJ_05902 [Oryza sativa Japonica Group]
          Length = 505

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 151/447 (33%), Gaps = 59/447 (13%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF--VL 71
           +L  V+R   S           S     S R++    A+V  TL++LP +  VL    VL
Sbjct: 48  VLRRVLRGDASRRAA---GSIKSLVYSPSVRNKRATFALVCQTLKYLPILKEVLASTGVL 104

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            S   +++  +     V+   IL+      +     +    +D       K+      R 
Sbjct: 105 TSKWKKQEELVF----VTAYDILFGQETAASGSVEQLIMLHKDTIMAALEKMCIRRKVRS 160

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
             + +   + +            R       E +  I       L  DL V         
Sbjct: 161 VEDLVSKKRTVKPKPRFLRVNTLRTSTDSVIEELNKIHKVDKDELVPDLLVLP------- 213

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                               + +    +EG  ++Q  ++ +            V+D CAA
Sbjct: 214 ----------------PGTDLHNHHLVSEGKVFLQGKASCMVAVALCPEPGWKVIDACAA 257

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF- 307
           PG KT  L   +     +TA +++K R + L+  + R      + I  D  D        
Sbjct: 258 PGNKTVHLAALMNGEGSITACELNKERTKTLQNTIRRSGANNIETINGDFLDIDSNDPSY 317

Query: 308 ---DAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIV-------KSACFQRKLLLQGISF 354
               A+L+D  CS +G      D L    +R   D         K + FQRK L   +SF
Sbjct: 318 AEVRAILLDPSCSGSGISTERLDHLLPSHSRGNQDDASTSSRIRKLSAFQRKALSHALSF 377

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
                 VV+S CS+ + ++E+VV  VL  +      +      W+   + +    E  +R
Sbjct: 378 PSVE-RVVYSTCSIHQAENEDVVSSVLPLASSLGFELATPFPQWRRRGLPVFEGSEHLLR 436

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
             P           G++GFF     R 
Sbjct: 437 TDP---------EDGLEGFFISLFVRK 454


>gi|295443046|ref|NP_594509.2| rRNA methyltransferase (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|259016427|sp|O14039|YEY6_SCHPO RecName: Full=Putative methyltransferase C2C4.06c
 gi|254745554|emb|CAB16366.2| rRNA methyltransferase (predicted) [Schizosaccharomyces pombe]
          Length = 455

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 161/450 (35%), Gaps = 64/450 (14%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF- 69
           ++++LS + +K+ S+  L                D     A+V  TL++ P +D ++   
Sbjct: 7   AANILSDLSKKKGSIKQLAFNSKKH---------DPKRTYALVCETLKYKPVLDEIIARS 57

Query: 70  --VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             +L  +L R    +  LL         +     ++ +  +++     + R  A+ V   
Sbjct: 58  ELLLKENLARV--LVHDLL---------MSKRGLSISNGPIKECILRHKTRLNAEFVKLK 106

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
           +++  +   EL  +      +P W +         E +  +           L     IE
Sbjct: 107 VKKGVKSHEELALKNPVS--LPRWLRINTIKSTKDEVLQGLG----------LDKVSSIE 154

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSV 245
                   +      +   +    IV    + EG   +QD ++  P  +    T +   +
Sbjct: 155 ELGPDKFYIDDCVENLIAIDPSFPIVENSLYKEGKVIIQDKASCFPAAVLAGLTGHVGDI 214

Query: 246 LDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           +D CAAPG KT         + + A +   +R++ LR  +         I   D     P
Sbjct: 215 IDGCAAPGNKTTHLAACFPKSHIFAFERDAKRVQTLRKMVGISGANNVTIEHQDFTLTDP 274

Query: 304 KKLFDA----VLVDAPCSSTGTIRRHPDVL-----WTRDTDDIVKSACFQRKLLLQGISF 354
           K         +L+D  CS +G + R   +L      T DT+ +     FQ  +L   + F
Sbjct: 275 KSDLYRNVTHILLDPSCSGSGIVSRQDYLLGNEQDVTEDTERLENLCSFQSTILKHALQF 334

Query: 355 VKPGGIVV-FSNCSLDKQDSEEVVQKVLRSSPIP-----VELVPLNSAYWKSIDMAMALS 408
             P    V +S CS+ + ++E+VV +VL   P        + +P           A    
Sbjct: 335 --PNCRHVTYSTCSVHRLENEQVVCEVLSQEPDWKCNSLTKTLPNWKTRGIPEYCAQPSM 392

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            EG IR  P         + G  GFF   L
Sbjct: 393 AEGMIRCKPG--------AGGTIGFFVANL 414


>gi|70606823|ref|YP_255692.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639]
 gi|68567471|gb|AAY80400.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639]
          Length = 367

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 117/294 (39%), Gaps = 23/294 (7%)

Query: 149 PEWFKERLENFYGKERVLAISDACI-SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           P+W +ERL++  G   V         + L  D+            +          R+ +
Sbjct: 81  PKWAEERLQSIMGDLNVKTRQQWIRVNTLKADVEDVRRKLERKGVVLQRDSFEFLFRVIK 140

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGA 264
               I  L  F  G   +QD ++   V       N  +L++  APG K     Q+  + +
Sbjct: 141 AKSRISDLEEFKNGEIVIQDKASVYSVVFLDPKPNEKILEIGCAPGMKTSLIQQITNNKS 200

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
            V  +D+S +R++  +  +++L +   +++  D  +  P    D VL+DAPC+++GT   
Sbjct: 201 LVIGIDISSKRIKIQQDLMNKLGVENVELVVSDGSNV-PITKADKVLIDAPCTNSGTFVA 259

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P +       D+++ +  QR +L     F  P    VFS CSL  ++ E++ +K     
Sbjct: 260 DPSIFLRITKKDLMRLSRLQRSILRSIRKFKVPT---VFSTCSLFPEEGEKIAEK----- 311

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                L P++            +     +R  P++         G +GFF    
Sbjct: 312 -YEAFLTPISIDTTNYGYKRSKVWKR-VVRFYPNI--------HGTEGFFIAKF 355


>gi|194746675|ref|XP_001955802.1| GF18939 [Drosophila ananassae]
 gi|190628839|gb|EDV44363.1| GF18939 [Drosophila ananassae]
          Length = 433

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 149/442 (33%), Gaps = 40/442 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ +L   +  + S+  L+  E                VR + +  LR      A ++
Sbjct: 15  RATAKILKQALENQKSIKSLIFEERH------------ARVRTL-HAVLRHYSDNRAAVE 61

Query: 69  FVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
             +  +  L       Q L +V V ++++       +   +    K         + ++ 
Sbjct: 62  NAIEETGLLKDNPNLDQYLAKVLVTELIFGR---KQLNGESKPVQKVRSYEEKLQQAISG 118

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
                       ++    +  + E  +      + ++ + A          I    + + 
Sbjct: 119 GGFEKKEPNPRYVRINTNLFSLSEALEYLASEEWRRKELPADVSYADFLAAIKALEEDEF 178

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
            T  H    ++            + +       E  + +Q+ +  +  +L       +VL
Sbjct: 179 MTDLHVEGVLIFHHKWANYWATHDFV------KEKKFILQNKATCLAAELLAPPPGSTVL 232

Query: 247 DLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           D+CAAPG KT  L     +  ++ A++ SK R   L    +         I  DA     
Sbjct: 233 DMCAAPGMKTLHLCNVMKNKGRIYAVEQSKERYHSLCSITNDAGCEIVTPILDDALRMND 292

Query: 304 KKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
           ++  +   +LVD  CS  G   R       +D   + K A  Q K+L   +        +
Sbjct: 293 ERCPEVEYILVDPSCSGNGMQSRINVCDEQKDERRLFKLAGLQVKILSHAMRAFPNVKRI 352

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIRITPD 418
            +  CSL K+++E+VVQ  L+ +P    L     L + +    D  +A   +  +   PD
Sbjct: 353 AYCTCSLWKEENEKVVQYCLQVNPSFKLLSCKKALRNKWQNVGDTELAKIGKNCLYCLPD 412

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
                   S   DG F     +
Sbjct: 413 --------SDLTDGIFLALFEK 426


>gi|218887116|ref|YP_002436437.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758070|gb|ACL08969.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 447

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 100/252 (39%), Gaps = 14/252 (5%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
            +         RL E P  +        G+ ++QD S+ +P          +VLD+CA+P
Sbjct: 32  FDPEPFSPWCRRLTEEPRPLGGSLTAFFGLIYIQDRSSMLPPLALAPEAGAAVLDMCASP 91

Query: 253 GGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFD 308
           G KT  L         V   + +  RL  LR NL  L+L               P   + 
Sbjct: 92  GSKTGFLAQLVGPHGLVVGNEPNHTRLATLRQNLFTLNLLNAATCSHPGEALPLPDGSWT 151

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            + +D PCS  GT+ R+P VL     D +      QR LL +    + PGG VVFS C+ 
Sbjct: 152 RIQLDPPCSGWGTVERNPSVLKLWQGDKVKPLIGIQRLLLAEAARLLAPGGRVVFSTCTT 211

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
           +  ++E  V        + +ELVPL                EG +R+ P          S
Sbjct: 212 NMHENEAQVLY--ARDELGLELVPLAPPPGFVFAEPELPGCEGTLRVDP--------ERS 261

Query: 429 GMDGFFAVALRR 440
           G  GFF   LR+
Sbjct: 262 GAQGFFIACLRK 273


>gi|145531751|ref|XP_001451642.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419297|emb|CAK84245.1| unnamed protein product [Paramecium tetraurelia]
          Length = 764

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 116/332 (34%), Gaps = 48/332 (14%)

Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN----FYGKERVLAISD 170
             N++ +K  N+  ++V     +   +   +         R         G E       
Sbjct: 4   HRNKNQSKYENAPQKKVKTNHWDQDNQQICVVQFENPIFRRFYEIQLPEIGAEEFKVFWQ 63

Query: 171 ACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW--- 224
           +   PL +   +       E+   +L    L    +  +E+ E I  +  +   + W   
Sbjct: 64  SLSLPLPVTFRINPSQYKYESLIERLQDGSLIKDMVNEEEIVEPIREIKWYPNHLVWESK 123

Query: 225 -----------------------------VQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
                                         Q+  + +P  L        VLD+CAAPG K
Sbjct: 124 VPKKSLRKSAALTKLHQFIQKCNSTGLLTRQELVSMLPPLLLDPQPTDFVLDMCAAPGSK 183

Query: 256 TAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLF 307
           T Q   IV+   + A DV  +R   L   L R+      I    A  Y        +  F
Sbjct: 184 TCQLLEIVTKGLIVANDVDPKRAYMLSHQLSRMPTAQVMITNYAAQFYPTLYINGQRLQF 243

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VL D PC+  G  R+ P         D       Q  +L++ +   K GG V++S CS
Sbjct: 244 DKVLCDVPCTGDGAARKLPTRWVKWSARDGNVIHPLQLSILMRALQLCKIGGYVMYSTCS 303

Query: 368 LDKQDSEEVVQKVLRSSP-IPVELVPLNSAYW 398
           L+  ++E VV +V R +     ELV L++   
Sbjct: 304 LNPIENEAVVAEVFRRAGFEAFELVDLHTLEG 335


>gi|242060966|ref|XP_002451772.1| hypothetical protein SORBIDRAFT_04g007580 [Sorghum bicolor]
 gi|241931603|gb|EES04748.1| hypothetical protein SORBIDRAFT_04g007580 [Sorghum bicolor]
          Length = 493

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 100/275 (36%), Gaps = 28/275 (10%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW-VQDASASIPVQLFGTLNNL 243
             E+   +LN + +      + ++             +    +  ++ +           
Sbjct: 186 TTESVIEELNKIHMVDKDDMIPDMLVLPPGTDLHNHPLVTDGKGRASCMVAVALSPKPGW 245

Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-- 298
            V+D CAAPG KT  L   +     + A +++K R + L+  + R       I+  D   
Sbjct: 246 KVIDACAAPGNKTVHLAALMNGKGSIIACELNKERAKTLQHTVRRSGANNIQIVNGDFLE 305

Query: 299 --FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIV-------KSACFQRK 346
              +        A+L+D  CS +G      D L    +RD  D         K + FQ+K
Sbjct: 306 VDRNDPSYAEVRAILLDPSCSGSGISTERLDYLLPSHSRDNQDDASTSSRVMKLSAFQKK 365

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            L   +SF      VV+S CS+ + ++E+VV  VL  +      +      W    + + 
Sbjct: 366 ALSHALSFPSVE-RVVYSTCSIHQAENEDVVNSVLPLATSLGFELATPFPQWHRRGLPVF 424

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              E  +R  P           G++GFF     R 
Sbjct: 425 QGSEHLLRTDP---------EDGLEGFFIALFVRK 450


>gi|237841851|ref|XP_002370223.1| hypothetical protein TGME49_094440 [Toxoplasma gondii ME49]
 gi|211967887|gb|EEB03083.1| hypothetical protein TGME49_094440 [Toxoplasma gondii ME49]
 gi|221482690|gb|EEE21028.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221503116|gb|EEE28822.1| ribosomal RNA small subunit methyltransferase B, putative
           [Toxoplasma gondii VEG]
          Length = 967

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 119/420 (28%), Gaps = 105/420 (25%)

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID--------- 179
           +++   +   +      + +P      ++     + +  + +A ++              
Sbjct: 115 QKICPPQEWNMFMACIKTSLPADAVNLVKLLSFGDELQRLYEASVTHWDACRMLSSSASL 174

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQDA 228
           +     +E     L  +    G          +     F                  Q+A
Sbjct: 175 VRFSQGLEESLQPLTWMPHEVGWQWNTVCKVRLRRDDSFKRIRRHLMNEDYRGGLTRQEA 234

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------------------- 266
            + +PV          +LD+CA+PG KT Q++                            
Sbjct: 235 VSMLPVLFLDVRPEHRILDMCASPGSKTTQILDMLQWHAVNSLQDGANSQALPGLGPPTG 294

Query: 267 --TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----------FDAVLVDA 314
              A DV  +R + L     ++   A  I   DA  +               FD +L D 
Sbjct: 295 FVIANDVDAQRTQTLAHQCMKVASPAIAISCSDASLFPLTLPDGPTGETRLQFDRILADV 354

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  GT+R++ D+         +     Q  +L +G+  ++ GG +V+S CSL   + E
Sbjct: 355 PCSGDGTMRKNGDLWRKWSAGGSLSLHSIQLGILHRGLQLLRVGGRLVYSTCSLSPLEDE 414

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR-------------------- 414
            V+  VL      +ELVP      K          +   R                    
Sbjct: 415 AVIAAVLLQYGDAIELVPPPPLPVKQRGREEEKGNDKTERSGGQEAEAQETAPVNGETGS 474

Query: 415 -------------------------------ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                                          +  D   ++    +   GFF    ++  +
Sbjct: 475 AQKFFTSFAEVPEPLRGKVKPTMFPPPSGAALHLDRAVRVLPHQNNSGGFFVACFQKKGE 534


>gi|332072565|gb|EGI83048.1| nusB family protein [Streptococcus pneumoniae GA17570]
          Length = 153

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L  V   +      L+     S    LS  D+ LV  +V  T+   
Sbjct: 1   MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
             ++  L   +     +    L  LL +S  Q+ YLD + D+AVV+ AVE AK     + 
Sbjct: 58  LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114

Query: 120 FAKLVNSILRRVSREKIE 137
             KLVN++LRR+ RE   
Sbjct: 115 SEKLVNAVLRRILREGWP 132


>gi|70607231|ref|YP_256101.1| SUN family protein [Sulfolobus acidocaldarius DSM 639]
 gi|68567879|gb|AAY80808.1| conserved Archaeal SUN family protein [Sulfolobus acidocaldarius
           DSM 639]
          Length = 349

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 42/240 (17%)

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SG 263
                 +  L     G   +Q  ++     L        ++D+ A PGGK   +      
Sbjct: 145 MYSSYPLSDLDELKTGEILLQGKASMYVAYLIDPKPGEKIIDMTAHPGGKLTHIYQLEPK 204

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTG 320
           A++   D +KR+++ LR    RL ++  +    D+            D VL+D PCS+ G
Sbjct: 205 ARILGFDHTKRKVQDLRQLTQRLGMH-IETYLADSRYLYEDFRISDVDKVLIDPPCSALG 263

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
                P +   ++ +D++  + +Q++ +      +K  GI+++S C++ + ++E +V+  
Sbjct: 264 L---RPKIYDKKNKEDLINLSSYQKQFINAAYKLLKKDGILIYSTCTMTEIENERIVED- 319

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   EL  +                   IR  P        +   + GFF   LR+
Sbjct: 320 -----ERFELEEI-------------------IRFYP--------MVHDITGFFIAKLRK 347


>gi|71660683|ref|XP_822057.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70887450|gb|EAO00206.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 608

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 96/269 (35%), Gaps = 50/269 (18%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKR 274
           G    Q+  + +P  L        VLD+CAAPG KT+Q+       +    V A D++  
Sbjct: 131 GYLTRQETVSMLPPVLLQVRPGHRVLDMCAAPGSKTSQILEALIPSMEDGVVVANDINTS 190

Query: 275 RLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           RL+ L    +R      HL               +  FD VL D  CS  GT+R+  D+ 
Sbjct: 191 RLDVLLHQTNRSAAAHSHLIVTSYDATQFPLLPSESKFDRVLCDVMCSGDGTLRKSMDMW 250

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
              +     +    Q ++LL+G+   K GGIVV+S CSL+  + E VV + L  +     
Sbjct: 251 PRWNVFQGAELHNTQIRVLLRGMMLCKKGGIVVYSTCSLNPVEDEAVVSECLLQAKGAFR 310

Query: 390 LVPLNSAYW-----KSIDMAMALSPEGWIRIT------------------------P--- 417
           L+   S          +D    L+ +   R+                         P   
Sbjct: 311 LMDPTSLVPGLVAAPGLDDWSLLTKDLKARLHTLQEAQVFAETSASNGISYRATMFPNKA 370

Query: 418 -------DMLEKIDGVSSGMDGFFAVALR 439
                      ++        GFF   + 
Sbjct: 371 RLQEQNIHYTRRVLPHFQDTGGFFVAVME 399


>gi|281209306|gb|EFA83479.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
          Length = 435

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 22/239 (9%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDV 271
           L      + ++Q   + + V      +   VLD+C+APGGKT     L+     + A+D 
Sbjct: 205 LNALFPDLLFLQHLPSILAVFQLDVKSGQRVLDMCSAPGGKTTLIASLMSDTGTIIAIDK 264

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMD---------AFDYCPKKLFDAVLVDAPCSSTGTI 322
           +K++ + ++     L + +   +  D                + FD +L+D PCS  G+ 
Sbjct: 265 NKKKQQTVQKLCLELGIKSVTCLSRDSAKLTKQPRDLPEFADESFDRILLDGPCSGLGSR 324

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            R  +        D+  +   QR+L+   +  +K GGI+V+S C+++ +++E+ V  +L 
Sbjct: 325 PRFIEPSKLI---DLTNATDIQRRLIDNAVPLLKRGGILVYSTCTINPEENEQNVAYLLA 381

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG-VSSGMDGFFAVALRR 440
                + L+               L+PE        ++++ D        GFF     +
Sbjct: 382 KHSN-MRLIAQFPHVGDRGLQKCGLTPEQQ-----HLVQRFDPSNKLSSIGFFIARFIK 434


>gi|195037114|ref|XP_001990010.1| GH18476 [Drosophila grimshawi]
 gi|193894206|gb|EDV93072.1| GH18476 [Drosophila grimshawi]
          Length = 433

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 150/455 (32%), Gaps = 58/455 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF----LPRID 64
             ++ +L   + K+ S+  L+  E                VR++    L+        +D
Sbjct: 15  KATAKILKAAIEKQKSIKSLIFEEKH------------ARVRSL-QAVLKHYSDNRGAVD 61

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL------DVADYAVVDLAVEQAKRDKENR 118
             ++      L         L +V V ++++       D      V    E+ ++     
Sbjct: 62  NAIEE--TGLLKDNPNLDSALAKVLVTELIFGRGQLNGDSKPVQTVRTYKERLQQAIGGS 119

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
              K   +         +  ++         EW +++L         L    A     ++
Sbjct: 120 DIQKKEPNPRYVRINTNLLSIEDALDYLYGEEWRRKQLPADATYPDFLNAIRALEEDEFL 179

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
                         +  V++               S        + +Q+ +  +  ++  
Sbjct: 180 MDMH----------VEGVLIFHHKWSHYW-----ASHDFVHSKKFILQNKATCLAAEMLA 224

Query: 239 TLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                +VLD+CAAPG KT  +     +  ++ A++ SK R   L    +         I 
Sbjct: 225 PPAGATVLDMCAAPGMKTLHMCNVMQNKGRIYAVEQSKERYMALCNITNEAGCQIVTPIL 284

Query: 296 MDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            DA     +K  D   +LVD  CS  G   R       +D   + K A  Q K+L   +S
Sbjct: 285 GDALTMNAEKCPDVEYILVDPSCSGNGMQSRISVCDEQKDDKRLYKLAGLQIKILSHAMS 344

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPE 410
                  +V+  CSL K+++E+VVQ+ L+ +P    L     L + +    D       +
Sbjct: 345 AFPDVKRIVYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWQNVGDKEYVQIGK 404

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
             +   PD            DG F     +  +P+
Sbjct: 405 NVLYCLPD--------EDLTDGIFLALFEK--RPE 429


>gi|118346491|ref|XP_976855.1| NOL1/NOP2/sun family protein [Tetrahymena thermophila]
 gi|89288491|gb|EAR86479.1| NOL1/NOP2/sun family protein [Tetrahymena thermophila SB210]
          Length = 635

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 104/263 (39%), Gaps = 51/263 (19%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----KVTALDVSKRR 275
           G    Q+  + IP  L     N  +LD+CAAPG KT Q++ S        + A D+SK+R
Sbjct: 130 GKISRQELVSMIPAALIDAQPNEKILDMCAAPGSKTKQMLESMMKGNESLLFANDISKKR 189

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
              L  ++ +L+     +   D   Y   + FD VL D PCS  GTIR+   +L    + 
Sbjct: 190 AFMLAFHVLKLNATCAVLTSNDCTKYPKVEQFDKVLCDVPCSGDGTIRKQKLILKRWSSK 249

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
                 C Q  LLL+ +  VK GG VV+S CSL+  ++E VV   LR     V+++ +  
Sbjct: 250 LGKNLHCLQLSLLLRALYLVKKGGSVVYSTCSLNPMENESVVSAALRILKPYVKIIDVKD 309

Query: 396 AYWKSIDMA--------------------------------------MALSPEGWIRITP 417
            +                                                  +G +RITP
Sbjct: 310 KFPGFKFSPTLSKWPVVQKKITNAYWSYESIDDVYGLKGKKIFDTMFPQEDVQGCLRITP 369

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
            M        +   GFF   L++
Sbjct: 370 HM--------NDTGGFFVAYLQK 384


>gi|224093730|ref|XP_002309966.1| predicted protein [Populus trichocarpa]
 gi|222852869|gb|EEE90416.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271
              Q+A + +P        +  V D+CAAPG KT QL+                V A D+
Sbjct: 169 ITRQEAVSMVPPLFLDVRPDHFVFDMCAAPGSKTFQLLEIIYQSTKSGSLPDGMVMANDL 228

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--------------------FDAVL 311
             +R   L     R+      +   +A  +   +                     FD VL
Sbjct: 229 DVQRCNLLIHQTKRMCTANLIVTNNEAQHFPGCRADKNGSKASEMEIEPQISQLLFDRVL 288

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R+ PD+    +          Q ++ ++G+S +K GG +V+S CS++  
Sbjct: 289 CDVPCSGDGTLRKAPDMWRKWNPGMGNGLHSLQIQIAMRGLSLLKVGGRMVYSTCSMNPV 348

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           + E VV ++LR     VELV ++S   + +   
Sbjct: 349 EDEAVVAEILRKCGGSVELVDVSSELPQLVRRP 381


>gi|325186979|emb|CCA21523.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 463

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 34/256 (13%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVS 272
           L G    V+++Q   +++   +    N+  +LD+CAAPGGKT  +   ++   + A+D S
Sbjct: 199 LNGLESKVFYLQQFPSAMVGHVIHPQNDDYILDMCAAPGGKTTHMANLMTKGLIIAVDRS 258

Query: 273 KRRLE----------------------------KLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           +R++                             K      R  +     +E   F     
Sbjct: 259 RRKVGALKRLLQDLGLGKRVIAIHKDSTQLLRLKSLQMAPRPSIEKLMEMENSHFRGFYP 318

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
           + FD +L+D PCS+ G     P +L  RDT+ + +    QR L+   +  +K  G++VFS
Sbjct: 319 ESFDKILLDPPCSALGL---RPRLLHPRDTEALEQFVKIQRNLIWCAVRLLKADGVLVFS 375

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            C+L  +++E++V  VL + P  ++L+            +  L  +G       ++++ D
Sbjct: 376 TCTLHPRENEKMVAYVLETYP-FMKLIAPFENDPNLRFGSKGLDGQGLSNEQVGLVQRFD 434

Query: 425 GVSSGMDGFFAVALRR 440
                  GFF    ++
Sbjct: 435 PTIDDTIGFFCAKFQK 450


>gi|302805749|ref|XP_002984625.1| hypothetical protein SELMODRAFT_120643 [Selaginella moellendorffii]
 gi|300147607|gb|EFJ14270.1| hypothetical protein SELMODRAFT_120643 [Selaginella moellendorffii]
          Length = 824

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 106/309 (34%), Gaps = 90/309 (29%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----------KVTALDV 271
              Q+A + +P        N  +LD+CAAPG KT QL+                V A D+
Sbjct: 164 ITRQEAVSMVPPLFLDVKPNHRILDMCAAPGSKTFQLLEVIHKDDQPGALSQGMVIANDL 223

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--------------------FDAVL 311
           + +R   L     R+      +   +A  +   K                     FD VL
Sbjct: 224 NVQRCHLLIHQTKRMCSPNILVTNHEAQHFPGLKKKKLEGRSFLICVVRDDTGLLFDRVL 283

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R+ PD+             C Q ++ ++G++ ++ GG +V+S CSL+  
Sbjct: 284 CDVPCSGDGTMRKAPDLWKKWSPGMGNGLHCLQIQIAMRGVALLEVGGRMVYSTCSLNPI 343

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAY-----------WKSIDMAMALS---PEGWIRITP 417
           + E VV ++LR S   +EL+ ++S             WK        S    + +  + P
Sbjct: 344 EDEAVVGEILRQSGGCMELLDVSSELPTLRRRPGLKSWKVRGRRRWFSSYHEDKYRAVLP 403

Query: 418 DMLE---------------------------------------------KIDGVSSGMDG 432
            M                                               +I        G
Sbjct: 404 SMFPSGKRMAQITREREGDMDSGNNVENPSEEATESEAEVSELPLERCMRILPHDQDTGG 463

Query: 433 FFAVALRRL 441
           FF  A +++
Sbjct: 464 FFIAAFQKV 472


>gi|159113214|ref|XP_001706834.1| Sun/nucleolar protein family protein [Giardia lamblia ATCC 50803]
 gi|157434934|gb|EDO79160.1| Sun/nucleolar protein family protein [Giardia lamblia ATCC 50803]
          Length = 742

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 13/206 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G    Q+A + IP          +VLD+CAAPG KT Q    +     + A D   +
Sbjct: 157 HEAGFIVRQEAVSMIPPIFLQAHAGEAVLDVCAAPGSKTLQLLEDVGPTGLLMANDADLK 216

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           R   L  N   + + +  I   DA  Y       LFD +L D PCS  GT+R+ PD+   
Sbjct: 217 RCYVLVHNTITVSMPSLVITNCDASRYPSLPGGMLFDKILADVPCSGDGTLRKAPDIWPR 276

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                 +     Q ++LL+ +  +K GG +V+S CSL+  ++E VV   L+     +E++
Sbjct: 277 WSPHGGLSLHPLQLRILLRSLQLLKVGGTLVYSTCSLNPIENEAVVASALQICQGSLEVL 336

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITP 417
             +      I           +   P
Sbjct: 337 DASHIAPSLIRSP-------GLTTWP 355


>gi|284040722|ref|YP_003390652.1| Fmu (Sun) domain protein [Spirosoma linguale DSM 74]
 gi|283820015|gb|ADB41853.1| Fmu (Sun) domain protein [Spirosoma linguale DSM 74]
          Length = 453

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 18/258 (6%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV----QLFGTLNNLSVLD 247
            L  V     G  L E P S    P F  G ++VQ+AS+ +      Q       L VLD
Sbjct: 40  DLVPVPWCPDGYYLPERP-SFTLDPLFQAGAYYVQEASSMLLHEALRQTVNLDRPLRVLD 98

Query: 248 LCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP- 303
           LCAAPGGK+      +   + +   +V + R+  LR NLD+       +   D  D    
Sbjct: 99  LCAAPGGKSTLLASALHPDSLLVCNEVIRSRVSVLRENLDKWGYPNVVVSNHDPEDMSKL 158

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              FD VLVDAPCS  G  R+ PD +       +   +  Q+++L      +   GI+++
Sbjct: 159 TGFFDVVLVDAPCSGEGLFRKDPDAMQEWSEASVDLCSARQKRILAAAAPLLDKDGILIY 218

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-WIRITPDMLEK 422
           S C+ + +++ E V+ +         L+  +             + E    +  P  +  
Sbjct: 219 STCTYNDRENAENVRYLTEIGFRNKPLILPSEWNIVERQAGDPETGEAVGYQCYPQRVRG 278

Query: 423 IDGVSSGMDGFFAVALRR 440
                    GFF  A ++
Sbjct: 279 E--------GFFISAFKK 288


>gi|296109553|ref|YP_003616502.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus
           ME]
 gi|295434367|gb|ADG13538.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus
           ME]
          Length = 274

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 34/270 (12%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFG 238
                  +L    +      L           SI + P +  G +  Q  S+ IP     
Sbjct: 23  SPSALKERLEKKGVKLEKTFLDYAFRVIESPFSIGATPEYLFGYYMPQSLSSMIPPITLN 82

Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                 VLD+CAAPGGKT  L   + +   + A+++SK R++ L+ N++R+++    II 
Sbjct: 83  PSPKDRVLDMCAAPGGKTTHLAQLMGNEGTILAVEISKERVKALKSNINRMNILNTIIIN 142

Query: 296 MDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            D   Y    +     FD +L+DAPCS      ++  V    D  DI   +  Q++LL  
Sbjct: 143 KDMRKYKEYLMKKKILFDKILLDAPCSGNIIKDKNRKV----DEKDIEYCSLRQKELLNI 198

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
           G+  +KPGG +V+S CS++++++EEV++ VL+S    ++L+ L+          +    +
Sbjct: 199 GLDLLKPGGELVYSTCSMEEKENEEVIEHVLKSR-DDIKLIKLSPIANFIRPGKI----K 253

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           G +++ P               FF   +++
Sbjct: 254 GTLKVYPPYEP-----------FFIAKIKK 272


>gi|322801564|gb|EFZ22220.1| hypothetical protein SINV_04379 [Solenopsis invicta]
          Length = 463

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 101/281 (35%), Gaps = 35/281 (12%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA------EGVWWVQDASASIPVQLFGT 239
           +     +L   +          + + I  +P F            +Q+  + I   +   
Sbjct: 190 LRQTRKELFCKVSRNPCGVAIIMTDVISRIPQFNINDESLRPHALLQNLPSIICSLVLNP 249

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE---- 295
             + +VLD+CAAPG KT  + +       +   ++   K+R   ++ +     I      
Sbjct: 250 QPDETVLDMCAAPGNKTTHISLLMKGQGTIIALEKNPGKVRRFKEKCNDRNIKIFCYDAT 309

Query: 296 ------------MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
                        D      +  FD +L+D PCS+ G   + P +  T  +  +      
Sbjct: 310 KAVIAREHSFVHTDDGPPFEENYFDRILLDTPCSALG---QRPQLYNTITSAQLRSYIPL 366

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP----IPVELVPLNSAYWK 399
           QR L    +  +KPGG +V+S C++   ++E ++   L+  P      V+       Y  
Sbjct: 367 QRSLFSVAVRLLKPGGTLVYSTCTVTIAENEGIIAWALKQFPKLKLESVKDEIKTDKYGI 426

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +   L+ E   ++         G  S   GFF   L++
Sbjct: 427 QGYVIDGLTNEDAKKV------CRFGPESDFVGFFIACLKK 461


>gi|302793867|ref|XP_002978698.1| hypothetical protein SELMODRAFT_418525 [Selaginella moellendorffii]
 gi|300153507|gb|EFJ20145.1| hypothetical protein SELMODRAFT_418525 [Selaginella moellendorffii]
          Length = 787

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 131/423 (30%), Gaps = 101/423 (23%)

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA--IS 169
           K+            + LR+       +         I +  +    +    E  +   + 
Sbjct: 56  KQGIVPESEWGQFMACLRKSLPTTFRINGGGQYAECIRDQMRRDFFDCLKDETEIDGEVI 115

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +      +    + + +     +L    +        +    + +           Q+A 
Sbjct: 116 EPPRPLPWYPNDLAWHLSFSRRQLRKASILQRIHEFLKEENELGN--------ITRQEAV 167

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----------KVTALDVSKRRLEK 278
           + +P        N  +LD+CAAPG KT QL+                V A D++ +R   
Sbjct: 168 SMVPPLFLDVKPNHRILDMCAAPGSKTFQLLEVIHKDDQPGALSQGMVIANDLNVQRCHL 227

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL---------------------FDAVLVDAPCS 317
           L     R+      +   +A  +   K                      FD VL D PCS
Sbjct: 228 LIHQTKRMCSPNILVTNHEAQHFPGLKKKKLEVDVKDKEPSIGDDMGLLFDRVLCDVPCS 287

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             GT+R+ PD+             C Q ++ ++G++ ++ GG +V+S CSL+  + E VV
Sbjct: 288 GDGTMRKAPDLWKKWSPGMGNGLHCLQIQIAMRGVALLEVGGRMVYSTCSLNPIEDEAVV 347

Query: 378 QKVLRSSPIPVELVPLNSAY-----------WKSIDMAMALS---PEGWIRITPDMLE-- 421
            ++LR S   +EL+ ++S             WK        S    + +  + P M    
Sbjct: 348 GEILRQSGGCMELLDVSSELPTLRRRPGLKSWKVRGRRRWFSSYHEDKFRAVLPSMFPSG 407

Query: 422 -------------------------------------------KIDGVSSGMDGFFAVAL 438
                                                      +I        GFF  A 
Sbjct: 408 KRMAQITLEREGDMDSGNNVENPSEGATESEAEVSEFPLERCMRILPHDQDTGGFFIAAF 467

Query: 439 RRL 441
           +++
Sbjct: 468 QKV 470


>gi|290973055|ref|XP_002669265.1| predicted protein [Naegleria gruberi]
 gi|284082810|gb|EFC36521.1| predicted protein [Naegleria gruberi]
          Length = 455

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 41/242 (16%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS--------VLDLCAAPGGKTA----QLI 260
                + EG++ +QD S+ + VQ       +         +LD C   GGKT      L 
Sbjct: 241 RQWKEYKEGLFDIQDESSQLIVQELIRNIVMKEIKTLKPLILDYCCGTGGKTFAFAGCLN 300

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319
             G        S++   +L+    RL +     IE D   +   K   + VL D PC+ T
Sbjct: 301 GKGQIYMHDVRSEKLFPELKRRAQRLGIENIQPIEHDHSHWDKLKDKMNLVLCDVPCTGT 360

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+RR+ +  +  +   + +    QR ++ + I FVK  G  ++S CS+ K+++E+ ++ 
Sbjct: 361 GTLRRNVETKYKINYQWLQELTEKQRDIIQKAIPFVKQDGYFLYSTCSILKKENEKQLEW 420

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +L+      +LV                     ++I P           G DG + V L+
Sbjct: 421 ILKKYKN-FQLV-------------------HTVKILP--------TIDGSDGMYGVLLK 452

Query: 440 RL 441
           R+
Sbjct: 453 RI 454


>gi|300706747|ref|XP_002995615.1| hypothetical protein NCER_101436 [Nosema ceranae BRL01]
 gi|239604789|gb|EEQ81944.1| hypothetical protein NCER_101436 [Nosema ceranae BRL01]
          Length = 579

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 41/256 (16%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRR 275
             G    Q+  + +PV L G   + SVLD+CAAPG KT Q   +I     V   +V  +R
Sbjct: 82  KAGHIQRQEVVSMLPVLLMGMEPSFSVLDMCAAPGSKTKQLLEIINDKGLVVCNEVKFKR 141

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           +  L     ++      ++  DA      KK FD VL D PCS  GT R++  V+     
Sbjct: 142 MRILVSETCKIPRRGFMVLRHDASTLPVFKKDFDRVLCDVPCSGDGTTRKNYGVVPNWCI 201

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           ++ +     Q  +L   I+FVK  G++V+S CSL+  ++E ++QK +    + +E+V L 
Sbjct: 202 NNALSLCKLQFSILKNAINFVKDDGLIVYSTCSLNPIENECIIQKAVLE--LDLEIVDLR 259

Query: 395 SAYWKSIDMAMALSPEG---------------------------WIRITPDMLEKIDGVS 427
           +   +          EG                            IR+ P          
Sbjct: 260 NNINEKFLSKKFKFREGLTKWNINIKNYNGINFEPVNDNIGLSKCIRVLPHDQ------- 312

Query: 428 SGMDGFFAVALRRLIQ 443
               GFF   L++ I+
Sbjct: 313 -NTGGFFITGLKKKIK 327


>gi|320590416|gb|EFX02859.1| methyltransferase [Grosmannia clavigera kw1407]
          Length = 1467

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 132/423 (31%), Gaps = 98/423 (23%)

Query: 115  KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
            KEN    +  N +L    +++       A    +P            K   LA+     +
Sbjct: 635  KENERLQQYYNGLLELNDKDEEREAFWAAFRRELP----HSFRFCGSKGHALAVQKLLQT 690

Query: 175  PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGV--------- 222
                +L      +         +          +      I   P FA            
Sbjct: 691  RYIPELAKISHYDGLPVSPPQPVPWYPDSLAWWMTTPKTVIRKFPPFAAFQKFLVSETTV 750

Query: 223  --WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-------------- 266
                 Q+  + IP  L      ++VLDLCAAPG K AQL+    +               
Sbjct: 751  GNISRQEVVSMIPPLLLDVRPGMAVLDLCAAPGSKAAQLLEMLHQGEEARVRKVLRDDGR 810

Query: 267  -----TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP------------------ 303
                  A D   +R + L   L RL      +   DA  Y                    
Sbjct: 811  ATGVLIANDSDYKRSQLLIHQLKRLSSPNIIVTNHDATVYPSLRLPPLATSSESKRPPPV 870

Query: 304  -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                FD +L D PCS  GT+R++  +         +     Q ++L++ +  ++PGG VV
Sbjct: 871  RYLKFDRILADVPCSGDGTLRKNVTMWKDWTPAGALGLHLVQVRILVRALQMLRPGGRVV 930

Query: 363  FSNCSLDKQDSEEVVQK---------------------VLRSSPIPVELVPLNS-----A 396
            +S CSL+  ++E VV                       +L+  P       ++      +
Sbjct: 931  YSTCSLNPVENEAVVATAIDLCGGPDRVAILDSSDKLPLLQRRPGLKRWSIMDRTGRQWS 990

Query: 397  YWKSIDMAMALSPEGWI---RITPDMLE-------------KIDGVSSGMDGFFAVALRR 440
             W  ++  +A    G +   R+ P M               ++        GFF VAL +
Sbjct: 991  SWPEVEAYVASDESGGLAPSRVVPSMFASEASDALPLERCIRVYPHLQDTGGFFIVALEK 1050

Query: 441  LIQ 443
              +
Sbjct: 1051 KAE 1053


>gi|156083481|ref|XP_001609224.1| proliferating-cell nucleolar protein [Babesia bovis T2Bo]
 gi|154796475|gb|EDO05656.1| proliferating-cell nucleolar protein, putative [Babesia bovis]
          Length = 726

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 109/282 (38%), Gaps = 59/282 (20%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-------------- 268
              Q+  + +PV     L + ++LD+CAAPG K  Q++ +                    
Sbjct: 167 LSRQETVSMLPVLYLDPLPHENILDICAAPGMKFLQILDAVHSSLHYDCKLSPCSNRGVI 226

Query: 269 --LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAP 315
              DV ++RL  L  N+  ++  +  +   D      +             FD VL D P
Sbjct: 227 IGNDVCQQRLSTLVHNVKGINCPSAAVTNFDGKSPPSRFPNLYNSNGEQLLFDRVLADVP 286

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  GT+R+ P++  T      +     Q  ++ + +  +KPGG +++S CSL+  ++E 
Sbjct: 287 CSCDGTMRKAPELWKTWKPVGGLHMHRLQLSIVKRAMQLLKPGGTLIYSTCSLNPLENEA 346

Query: 376 VVQKVLRS--SPIPVELVPLNSAYWKSIDMAMA----LSPEGWI-------------RIT 416
           +   +         VELVPL+       D  +A     +P+G               R+ 
Sbjct: 347 IASYIASEGMFEFGVELVPLDPIPGFRADHGLASWLVPNPDGGYFQSYDTVPESMRHRVM 406

Query: 417 PDMLE-------------KIDGVSSGMDGFFAVALRRLIQPK 445
           P M               ++    +   GFF +  R+++  K
Sbjct: 407 PSMFPSPQWDSVMSSRVMRVLPHHNDTGGFFLLKARKVVSNK 448


>gi|291548279|emb|CBL21387.1| NOL1/NOP2/sun family [Ruminococcus sp. SR1/5]
          Length = 389

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 34/222 (15%)

Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLDLCAAPGGK   L         + A D+S  R   L  NL+   +    + +      
Sbjct: 15  VLDLCAAPGGKATALGAALNDTGFLLANDISTSRARALLRNLELFGMKNMLVTDEKPAKL 74

Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
             +    F+ +L+DAPCS  G  R+   +      +   + +  Q+ L+L+    ++PGG
Sbjct: 75  AQRFPAFFNKILLDAPCSGEGMFRKEEALARDWTPEKSAELSDIQKDLVLKAADMLRPGG 134

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---------- 409
           ++++S C+  + + EEVV  +LR  P  +EL+ +      S                   
Sbjct: 135 MLLYSTCTFSQCEDEEVVAYLLRQRP-DMELMEMPGYEGFSSGRPEYAGTADTSDSEITL 193

Query: 410 ----------EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                     +  +RI P  ++          G F    R+ 
Sbjct: 194 SLNAFNPEELQKCVRIFPHKMDGE--------GHFLALFRKK 227


>gi|297686139|ref|XP_002820622.1| PREDICTED: putative methyltransferase NSUN6-like [Pongo abelii]
          Length = 469

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 94/267 (35%), Gaps = 37/267 (13%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP-------- 315
            +V ALD    ++EK++ N   L L +      D        + +    + P        
Sbjct: 260 GEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFIVVSYIR 319

Query: 316 ---CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
                    + + P++  T    ++      QRKL    +  +KP G++V+S C++   +
Sbjct: 320 HMIEGECAGMGQRPNMACTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAE 379

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD- 431
           +EE V   L   P  ++L                LS E   ++       +    + MD 
Sbjct: 380 NEEQVAWALTKFPC-LQLQRQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDS 438

Query: 432 ------------------GFFAVALRR 440
                             GFF     +
Sbjct: 439 LREARREDMLRLANKDSIGFFIAKFVK 465


>gi|302830274|ref|XP_002946703.1| tRNA-methyltransferase [Volvox carteri f. nagariensis]
 gi|300267747|gb|EFJ51929.1| tRNA-methyltransferase [Volvox carteri f. nagariensis]
          Length = 404

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 93/301 (30%), Gaps = 84/301 (27%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVT 267
             G    Q+A + +P        +  VLD+CAAPG KT Q                  V 
Sbjct: 111 DAGSISRQEAVSMVPPLFLDVQPHHRVLDMCAAPGSKTFQLLEAIHANSRPGQTPPGFVV 170

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------------------- 302
           A D    R   L     R+      +   DA  +                          
Sbjct: 171 ANDADFMRCNLLTHQTKRVCSPCLLVTNHDASRFPVFLAGAPTAAAQASAAGGASAPPPR 230

Query: 303 ---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +L D PCS  GT+R+ PD+    +          Q ++ + G   ++ GG
Sbjct: 231 PPRYTVRFDRILADVPCSGDGTLRKSPDIWRKWNVGGGNSLHSVQLRIAMHGAKLLEVGG 290

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK-------------------- 399
            +V+S C+ +  + E VV ++L      +EL+ ++    +                    
Sbjct: 291 RMVYSTCTFNPVEDEAVVSELLLRCGGALELLDVSDCMPQLRRMAGKHTWQVRDRYRFYS 350

Query: 400 -----------------SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                            S     AL  E  +R  P              GFF   LR++ 
Sbjct: 351 SWDEARETGYKLEESMFSNPAKAALPLERCMRFLPHH--------GDTGGFFVAVLRKVS 402

Query: 443 Q 443
           +
Sbjct: 403 E 403


>gi|164661315|ref|XP_001731780.1| hypothetical protein MGL_1048 [Malassezia globosa CBS 7966]
 gi|159105681|gb|EDP44566.1| hypothetical protein MGL_1048 [Malassezia globosa CBS 7966]
          Length = 922

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 103/331 (31%), Gaps = 44/331 (13%)

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177
              +    +  R       E           P     R+ +     R L  +   I   +
Sbjct: 35  EQRSPKFEAYYRGQGIVPDEEWDTFIESMRTPLPTTFRITSGKPTARQLLDAMNKIYLPF 94

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQ 226
           +        +    +         G  L      +   P F                  Q
Sbjct: 95  LSNVQFEGEKVTPPRQLEWYPEGLGWHLDVRKNVLRKSPEFKRFQQFLVHETEVGSISRQ 154

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK----------------VTALD 270
           +A + +P           VLDLCAAPG KTAQLI +                   V A D
Sbjct: 155 EAVSMLPPLFLDVRPEHLVLDLCAAPGSKTAQLIEAIHSPLTSSPDAFDPMPLGVVVAND 214

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMD-----------------AFDYCPKKLFDAVLVD 313
              +R   L     RL   +  +  +D                       +  +D VL D
Sbjct: 215 SDTKRAHMLVHQAQRLPSPSLCVTNVDASNMANIQVAWKGEQPSDPICQRELKYDRVLAD 274

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS   T+R++  +       +       Q ++L++G+  ++PGG +V+S CSL+  ++
Sbjct: 275 VPCSGDATLRKNLSIWKDWTPMNGTGLHALQLRILIRGLMLLRPGGRLVYSTCSLNPIEN 334

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           E VV   LR     V +   +S         
Sbjct: 335 EAVVAAALRHFQGDVTVFDASSMLPALKRRP 365



 Score = 40.3 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 9/60 (15%)

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ-PK 445
             +L                L  E  IR+ P M            GFF   L +  + P+
Sbjct: 442 DADLASRTPKSLWPQGDEETLHLERCIRVYPHMQ--------NTGGFFVCVLEKKPKTPE 493


>gi|150399201|ref|YP_001322968.1| NOL1/NOP2/sun family RNA methylase [Methanococcus vannielii SB]
 gi|150011904|gb|ABR54356.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
           vannielii SB]
          Length = 265

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 122/268 (45%), Gaps = 26/268 (9%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFG 238
             E    +L    +      L  +        S+ + P +  G++++Q  S+ IP  +  
Sbjct: 15  SPEELKKRLEEKNVVLEDTFLNYVFRVKISPFSMGATPEYLSGLYFLQSISSIIPSIVLN 74

Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
              +  VLD+C+APGGKT  L   + +   + A++++K RL+ LR N++R+ +    ++ 
Sbjct: 75  PTKDDKVLDMCSAPGGKTTHLSQLMENEGCIVAVEINKNRLKSLRSNINRMGIKNIIMLN 134

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
            +A +      FD +L+DAPC+              +   DI+  A  Q +L    I  +
Sbjct: 135 TNAINLNKNLKFDKILLDAPCTGNEIKDSDRV----KTKRDILFCAKRQVELFRTAIEVL 190

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
             GG +V+S CS + ++ EE++  +L++    +EL+ LN   +  I++       G +++
Sbjct: 191 SEGGQLVYSTCSPEIEEDEEIISYILKTYKN-MELIELNKEDFPGINVIDGEIK-GTLKV 248

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            P               FF   L+++ +
Sbjct: 249 IPPNEP-----------FFIAKLKKITK 265


>gi|260798006|ref|XP_002593991.1| hypothetical protein BRAFLDRAFT_118815 [Branchiostoma floridae]
 gi|229279224|gb|EEN50002.1| hypothetical protein BRAFLDRAFT_118815 [Branchiostoma floridae]
          Length = 933

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 70/236 (29%), Gaps = 48/236 (20%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
                           +++        +   +  ++     R    +          +  
Sbjct: 322 RWCTTYKEKKSMMGPHVMTPLPNHHFLLCFAQGARIEFAPVRSGSDSVF-RCWKIIKWWS 380

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            +         P    GT+R++PDV               Q +++ +GI  ++ GG +V+
Sbjct: 381 YEKNHFRRTMPPIGGDGTMRKNPDVWKKWSPGQGQNLHNLQLRIVRRGIELLRVGGQLVY 440

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY-----------WKSIDMAMALSP--- 409
           S CSL+  + E V+  +L      VELV ++              WKS D   ++S    
Sbjct: 441 STCSLNPLEDEAVIAALLTECEDSVELVDVSDKLAGLKRLSGVSAWKSGDFYSSISEVPT 500

Query: 410 -------------------------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                                       IRI P   +          GFF   LR+
Sbjct: 501 DRHSNLRRASMFPPPDPDKLQAMQLNRCIRILPHHQD--------TGGFFVAVLRK 548


>gi|300699440|ref|XP_002994849.1| hypothetical protein NCER_102567 [Nosema ceranae BRL01]
 gi|239601481|gb|EEQ81178.1| hypothetical protein NCER_102567 [Nosema ceranae BRL01]
          Length = 185

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 4/183 (2%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            +  +      + +      + + P +  G   +Q AS+ + V       NL ++D+CAA
Sbjct: 2   DMENIEWCDDALVIFNSSVPVGATPEYLAGYLIIQGASSMLSVLNLDVKENLKIIDMCAA 61

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308
           PGGK+  +   + +   + + D+S  R++ LR NL R+ +    +  +DA       + D
Sbjct: 62  PGGKSQYISALMNNTGVLYSNDISDDRIKALRSNLLRMGVTNAIVTNLDARKLNFGLV-D 120

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VL+DAPCS TG I + P +  +R  DDI K+   Q++L+L+G   +K GG++V+S CS+
Sbjct: 121 RVLLDAPCSGTGVISKDPSIKMSRTVDDIRKTVFRQKELILKGFDMLKKGGVMVYSTCSV 180

Query: 369 DKQ 371
             +
Sbjct: 181 LTE 183


>gi|255941612|ref|XP_002561575.1| Pc16g12760 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586198|emb|CAP93946.1| Pc16g12760 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 776

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 129/449 (28%), Gaps = 102/449 (22%)

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155
                  +     +  +   E     +    +     R+ +    R  G        ++R
Sbjct: 22  TRAQWQDITRENEKFERYYNEPEFLPEEEKELFWATMRKDLPNSFRFTGSRGHALAVQQR 81

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215
           L + +  E      +         ++   D   W+      ++             +   
Sbjct: 82  LIDHHIPEITSIKYEDEFVEPPRPVSWYPDQLAWSMTTPKNVIRRFAPFASFQKFLVAET 141

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--------------- 260
                G    Q+  + IP  L      ++VLD+CAAPG K+AQL+               
Sbjct: 142 ---DVGNISRQEVVSMIPPLLIDAKPGMTVLDMCAAPGSKSAQLMELLHAGEEDAIAQVT 198

Query: 261 ----------------------VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
                                  S   + A D   +R   L   + RL      +   DA
Sbjct: 199 EQIKSGTAGPEPLGPEGLNDDGRSTGLLIANDSDYKRAHMLIHQMKRLSSPNLIVTNHDA 258

Query: 299 FDYCPKK-----------------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
             +   K                  FD +L D PCS  GT R++  V       + +   
Sbjct: 259 TMFPSIKLPPLPTADGSKPKNRYLKFDRILADVPCSGDGTTRKNVGVWKDWTPGNALGLY 318

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN------- 394
             Q ++L++ +  +K GG VV+S CSL+  ++E VV   +        +  ++       
Sbjct: 319 STQSRILVRALQMLKVGGRVVYSTCSLNPVENEAVVASAIERCGGAANVKIVDCSQELPG 378

Query: 395 --------------------SAYWKSIDMAMALSPEGWIRI-------------TP-DML 420
                               + + +  +        G  R+              P D  
Sbjct: 379 LKRASGLHNWKVMDREGRMWNNWQEVEEHRDQEGINGLARLAEGMFAPTGEAANLPLDRC 438

Query: 421 EKIDGVSSGMDGFFAVALRR----LIQPK 445
            ++        GFF   L +      +P+
Sbjct: 439 MRVYPHQQDTGGFFITVLEKTSEIKAKPE 467


>gi|238488983|ref|XP_002375729.1| methyltransferase (Ncl1), putative [Aspergillus flavus NRRL3357]
 gi|220698117|gb|EED54457.1| methyltransferase (Ncl1), putative [Aspergillus flavus NRRL3357]
          Length = 876

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 118/398 (29%), Gaps = 117/398 (29%)

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213
           ERL+ FY  E      +         ++   D   W+      ++             + 
Sbjct: 75  ERLKEFYIPEITSIKYEGNFVEPPRPVSWYPDQLAWSMTTPKQVVRRFAPFANFQKFLVA 134

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------- 264
                A G    Q+  + IP  L      ++VLD+CAAPG K+AQL+             
Sbjct: 135 ET---AVGSISRQEVVSMIPPLLLDVKPGMTVLDMCAAPGSKSAQLMEMIHAGEEESMSQ 191

Query: 265 ----------------------------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                                        + A D   +R   L   + RL      +   
Sbjct: 192 ASKQVKEGTAGPEPLGPEGLNDDGRTTGLLIANDTDYKRAHMLIHQMKRLSSPNLIVTNH 251

Query: 297 DAFDYC----------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
           DA  Y                     FD +L D PC+  GT R++  V       + +  
Sbjct: 252 DATMYPSIKLPSPPGPSGKVQNKYLKFDRILADVPCTGDGTPRKNIGVWKEWTPGNALGL 311

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP------------- 387
              Q ++L++ +  +K GG VV+S CS++  ++E VV   +                   
Sbjct: 312 YATQVRILVRALQMLKVGGRVVYSTCSMNPVENEAVVASAIERCGGAANVRIVDCSNELP 371

Query: 388 -VELVP-----------------------------------LNSAYWKSIDMAMALSPEG 411
            ++ VP                                   + +  +        L  E 
Sbjct: 372 GLKRVPGLKTWKVMDRDTRMWNTWEEIEEHRASQGISGLGRVAAGMFPPTGENADLPLER 431

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR----LIQPK 445
            IRI P + +          GFF   L +      +P+
Sbjct: 432 CIRIYPHLQD--------TGGFFITVLEKQSEIRAKPE 461


>gi|317025699|ref|XP_001389625.2| methyltransferase (Ncl1) [Aspergillus niger CBS 513.88]
          Length = 880

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 74/245 (30%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------------PKKLFDA 309
            A D   +R   L   + RL      +   DA  +                      FD 
Sbjct: 218 IANDADYKRAHMLIHQMKRLSSPNLIVTNHDATMFPSIRLPPEPAPEGKPVKNKYLKFDR 277

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PC+  GT R++  V    + ++ +     Q ++L++ +  +K GG VV+S CS++
Sbjct: 278 ILADVPCTGDGTARKNWGVWKDWNYNNALGLYATQVRILVRALQMLKVGGRVVYSTCSMN 337

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL------SPEG------------ 411
             ++E V+   L         +   S     +  A  L        EG            
Sbjct: 338 PIENEAVIASALERCGSANVRILDCSNELPGLKRAPGLKTWKVMDREGRMYNSWKEVEER 397

Query: 412 ---------------------------WIRITPDMLEKIDGVSSGMDGFFAVALRRL--- 441
                                       +RI P M +          GFF   L ++   
Sbjct: 398 KEREGISGLGRVAEGMFPPTEDLPLDRCLRIYPHMQD--------TGGFFITVLEKVSEI 449

Query: 442 -IQPK 445
             +P+
Sbjct: 450 RAKPE 454


>gi|255581738|ref|XP_002531671.1| conserved hypothetical protein [Ricinus communis]
 gi|223528702|gb|EEF30715.1| conserved hypothetical protein [Ricinus communis]
          Length = 843

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 42/273 (15%)

Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
               ++L+    +I      +  +  +      I +  +    +  +LD+CAAPG KT Q
Sbjct: 152 FHEFLKLENEIGNITRQEAVSMIISILIFHVLFIYLTSYILXPDHFILDMCAAPGSKTFQ 211

Query: 259 LIV-----------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL- 306
           L+                V A D+  +R   L     R+      +   +A  +   +  
Sbjct: 212 LLEIIYQSTKPGSLPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNNEAQHFPGCRAN 271

Query: 307 -------------------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                              FD VL D PCS  GT+R+ PD+    ++         Q ++
Sbjct: 272 KSCTKASEIEFEPPIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNSGMGNGLHVLQIQI 331

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
            ++G+S +K GG +V+S CS++  ++E VV ++LR     VEL+ ++S   + +      
Sbjct: 332 AMRGMSLLKVGGRMVYSTCSMNPVENEAVVAEILRKCGGSVELLNVSSELPQLVRRP--- 388

Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                +R      + I   S   D       RR
Sbjct: 389 ----GLRKWKVRDKGIWLSSHK-D---VSKFRR 413


>gi|84999818|ref|XP_954630.1| methyl transferase [Theileria annulata]
 gi|65305628|emb|CAI73953.1| methyl transferase, putative [Theileria annulata]
          Length = 667

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 133/400 (33%), Gaps = 62/400 (15%)

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
           +       R  E   F K      +     K E  +     S IP     RL       R
Sbjct: 47  NQRENGRTRFVEGTLFNKEFEKYYKDQKICKEEEWKMFEEYSRIPLPVSFRLNTSSFLWR 106

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
                         DL ++  ++     L          ++K    S+     FA+   +
Sbjct: 107 -HTRDKLKQMCDSEDLYLEPCLDYCPEYLKNEEDYNIFFQMKASKSSLRKNENFAQFHQF 165

Query: 225 VQDA-----------SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----------- 262
           + +             + +PV       N ++LD CAAPG K  Q++             
Sbjct: 166 LMNEDNRGSLCRQETVSMLPVLFLDPKPNENILDFCAAPGMKYLQIVDMVETRLKWQNLD 225

Query: 263 ----GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-------FDAVL 311
                  +   DVS+ R+  L  +L  +   +  I   DA  +            FD +L
Sbjct: 226 SLKNKGIIVGNDVSQTRVSTLAHHLKSIDSPSTAITNYDATRFPNLYNNKGQLILFDKIL 285

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R+  D+       + +     Q  +L +GI  +KPGGI+++S CSL+  
Sbjct: 286 ADMPCSCDGTMRKSIDIWTNWKATNGLHLHKVQLTILKRGIELLKPGGILIYSTCSLNPL 345

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWI------------RIT 416
           ++E +      +  + +  +     +     +   L P+   G+             RI 
Sbjct: 346 ENEAIASYCASNEDVELVDLEPIQGFKTEKGLTDWLVPDLNGGYFSDFSQVNDNLKERIK 405

Query: 417 PDMLE-------------KIDGVSSGMDGFFAVALRRLIQ 443
             M               ++    +   GFF   +R++ +
Sbjct: 406 ETMFRSSKWNEEMAKKVMRVLPHYNNTGGFFIFKIRKVTK 445


>gi|322821344|gb|EFZ27696.1| hypothetical protein TCSYLVIO_6086 [Trypanosoma cruzi]
          Length = 635

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 96/269 (35%), Gaps = 50/269 (18%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKR 274
           G    Q+  + +P  L        VLD+CAAPG KT+Q+       +    V A D++  
Sbjct: 158 GYLTRQETVSMLPPVLLQVRPGHRVLDMCAAPGSKTSQILEALIPSMEDGVVVANDINTS 217

Query: 275 RLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           RL+ L    +R      HL               +  FD VL D  CS  GT+R+  D+ 
Sbjct: 218 RLDVLLHQTNRSAAAHSHLIVTSYDATQFPLLPSESKFDRVLCDVMCSGDGTLRKSMDMW 277

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
              +     +    Q ++LL+G+   K GGIVV+S CSL+  + E VV + L  +     
Sbjct: 278 PRWNVFQGAELHNTQIRVLLRGMMLCKKGGIVVYSTCSLNPVEDEAVVSECLLQAKGAFR 337

Query: 390 LVPLNSAYW-----KSIDMAMALSPEGWIRIT------------------------P--- 417
           L+   S          +D    L+ +   R+                         P   
Sbjct: 338 LMDPTSLVPGLVAAPGLDDWSLLTKDLKARLHTMEEAQVFAETSASSGISYRATMFPNKA 397

Query: 418 -------DMLEKIDGVSSGMDGFFAVALR 439
                      ++        GFF   + 
Sbjct: 398 RLQEQNIHYTRRVLPHLQDTGGFFVAVME 426


>gi|305664020|ref|YP_003860308.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378589|gb|ADM28428.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
          Length = 417

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 172/446 (38%), Gaps = 56/446 (12%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           +  L  V R+RIS              R +S  D+  +  +    +    ++       +
Sbjct: 11  ATTLYTVKRRRISTRRAFSYVCRRFGCR-ISGIDREELYRLAIDFITNYHKL-----LYI 64

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             S+   + S + L ++ +             +  + E+       +  A+ +  I R  
Sbjct: 65  AKSIRGSEPSHKTLAKIYLY----------LKLRESGEKIPTKLR-KAIARDIPGIERSY 113

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT-VKFDIETW 189
           S E++        +  +P+W  ++L     +E V  +  A    + +I +  ++ DI+  
Sbjct: 114 SVEEL------WALYSVPKWIYDKLSMVLPREDVEELFRAINRRVLWIRINTLRIDIDKA 167

Query: 190 AHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
              L                +R+ +    I +L  F  G   +QD ++   V       +
Sbjct: 168 LKVLENSDVVFIQDKTYPFILRIVKTKRPIRTLELFKNGSIVIQDKASIFTVLALRPEPD 227

Query: 243 LSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMD 297
           + + D  AAPG KT+ ++    + A++ A+D+S+RRLE ++  L R  +     D++  D
Sbjct: 228 MVIYDFAAAPGIKTSLIMQLTENRARIIAIDLSRRRLEAMKLLLKRYGVDTSRVDLVLSD 287

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRDTDDIVKSACFQRKLLLQGISFVK 356
           +      +  DA L+DA CSS+G + + P +    RD     K    Q  +L   + +  
Sbjct: 288 SRYISMARKADASLIDAVCSSSGAMPKDPSIRIILRDPSIPEKMKKIQIAMLENTLRYTD 347

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR-- 414
              I V++ CSL  ++ EEVV+ +             +      +      +  G+ R  
Sbjct: 348 ---IAVYAVCSLFPEEGEEVVETL------------TDRGIEHRVVDTRIPTSRGYKRYK 392

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
           I   ++ +        +GFF   L R
Sbjct: 393 IW-SLVSRTFPHIDECEGFFIARLER 417


>gi|223997102|ref|XP_002288224.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975332|gb|EED93660.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 396

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 91/286 (31%), Gaps = 68/286 (23%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ------------------LI 260
             G    Q+  + IP  +      +SVLD+CAAPG KT Q                   +
Sbjct: 111 DCGHITRQETVSMIPPVVLDAKEGMSVLDMCAAPGSKTCQILEAVGGMPAKDGEISGSNV 170

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDA 309
                + A D   +R   L   L RL   A  +   D   +             + +FD 
Sbjct: 171 EPKGYIVANDADPKRAYMLVTQLRRLQSPAVFVTSADGQFFPVLDEKNVRGTDKEGMFDR 230

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           VL D PCS  GT+R++P +    +    +     Q  + L+G      GG VV+S CS++
Sbjct: 231 VLCDVPCSGDGTVRKNPGIWKQWNQLGALALHPLQLSIALRGARLAHVGGYVVYSTCSMN 290

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA----------------------- 406
             ++E VV ++LR +   +EL          I                            
Sbjct: 291 PTENESVVAELLRIADGALELEDPRERMEGLIARPGWSSWKATLSERTNSLGFVEYASYD 350

Query: 407 ----------------LSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
                            + E   R       +         GFF  
Sbjct: 351 DVEPEWRRRVRESCFPPTEEEAKRFQLHKSLRCLPHDMDTGGFFVA 396


>gi|218190325|gb|EEC72752.1| hypothetical protein OsI_06382 [Oryza sativa Indica Group]
          Length = 479

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 85/419 (20%), Positives = 144/419 (34%), Gaps = 56/419 (13%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDF--VLISSLPRKKYSLQQLLRVSVAQILYLDVA 99
           S R++    A+V  TL++LP +  VL    VL S   +++  +     V+   IL+    
Sbjct: 47  SVRNKRATFALVCQTLKYLPILKEVLASTGVLTSKWKKQEELVF----VTAYDILFGQET 102

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
             +     +    +D       K+      R   + +   + +            R    
Sbjct: 103 AASGSVEQLIMLHKDTIMAALEKMCIRRKVRSVEDLVSKKRTVKPKPRFLRVNTLRTSTD 162

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
              E +  I       L  DL V                             + +    +
Sbjct: 163 SVVEELNKIHKVDKDELVPDLLVLP-----------------------PGTDLHNHHLVS 199

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276
           EG  ++Q  ++ +            V+D CAAPG KT  L   +     +TA +++K R 
Sbjct: 200 EGKVFLQGKASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERT 259

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVL--- 329
           + L+  + R      + I  D  D            A+L+D  CS +G      D L   
Sbjct: 260 KTLQNTIRRSGANNIETINGDFLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDHLLPS 319

Query: 330 WTRDTDDIV-------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            +R   D         K + FQRK L   +SF      VV+S CS+ + ++E+VV  VL 
Sbjct: 320 HSRGNQDDASTSSRIRKLSAFQRKALSHALSFPSVE-RVVYSTCSIHQAENEDVVSSVLP 378

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +      +      W+   + +    E  +R  P           G++GFF     R 
Sbjct: 379 LASSLGFELATPFPQWRRRGLPVFEGSEHLLRTDP---------EDGLEGFFISLFVRK 428


>gi|241958118|ref|XP_002421778.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223645123|emb|CAX39720.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 504

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 143/427 (33%), Gaps = 39/427 (9%)

Query: 49  VRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQ-LLRVSVAQILYLDVADYAVVDL 106
           + A+V  TL++   ID ++    +   L  KK  +   LL + +  +L+           
Sbjct: 80  IFALVYSTLKYKEYIDVIIKKSKIRQDLQFKKAKISNELLCLMIHDLLFSSKGRIQSGKH 139

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIP-EWFKERLENFYGKERV 165
            ++ A    + R  A+ +   L+   +   +L  + A     P  WF+            
Sbjct: 140 PLKDAFLSNKTRLQAEFIKLKLKYKVKSVDQLPTKEADEDETPIRWFRINTIKIDKDRFY 199

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
                         +            +         +      E I S   +  G   +
Sbjct: 200 TKHPFFQKLQPVSSIDEITGT-----GMIYSDDYIPNLFGVHPREKITSTEAYRLGEIII 254

Query: 226 QDASASIPVQL---FGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRLEK 278
           QD ++  P  +        +  V+D CAAPG KT           + V A +   +R++ 
Sbjct: 255 QDRASCFPSHILNSDPKDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVYAFERDPKRVKI 314

Query: 279 LRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAV--LVDAPCSSTGTIRRHPDVLWTR 332
           L+   ++    A      +   D     P    D    +VD  CS +G   R  +     
Sbjct: 315 LKTMCEKATGKAKKKLIQVTHADFTTTKPDDFPDVTGLVVDPSCSGSGIFGRALEDSHNE 374

Query: 333 DTDDI------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----- 381
           +  +        K A FQ  ++   +SF      VV+S CS+  Q++E VV  +L     
Sbjct: 375 EETENVNTERLNKLAGFQFAIMKHALSF-PSAKKVVYSTCSIHAQENERVVVDLLSDPEV 433

Query: 382 -----RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
                + +   V L   +    +   + M+  PE   R+    +   +    G  GFFA 
Sbjct: 434 NRRGWKLADREVVLPKWDRRGLEEEFVKMSRDPEECTRLAGGCVR-ANPKQDGGIGFFAA 492

Query: 437 ALRRLIQ 443
              R  Q
Sbjct: 493 CFVRPAQ 499


>gi|221481020|gb|EEE19432.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 964

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 42/177 (23%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VL D PCS+ GT+R+   +     ++  +     Q ++LL+GI   K  G +V+S C
Sbjct: 257 FDCVLCDVPCSADGTLRKARSLWTRWHSNQGLGCHRLQLQILLRGIKLCKVNGRIVYSTC 316

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS------PEGWIRI----- 415
           S +  ++E VV   L  +   VELV  +             +       E + R      
Sbjct: 317 SFNPVENEAVVAAALEKTKGAVELVDCSGVLPTLQRRPGLKTWRVYWQKEFYDRFEDVPQ 376

Query: 416 ------------------------------TP-DMLEKIDGVSSGMDGFFAVALRRL 441
                                          P     +     +   GFF   L + 
Sbjct: 377 TSAARQKVRPTMFPQYAASKAGEGKNGQDGLPLHRCMRFLPHLNNTGGFFVAVLEKK 433


>gi|15605282|ref|NP_220068.1| RNA methyltransferase [Chlamydia trachomatis D/UW-3/CX]
 gi|3328993|gb|AAC68155.1| RNA Methyltransferase [Chlamydia trachomatis D/UW-3/CX]
 gi|297748683|gb|ADI51229.1| 16S rRNA m(5)C 967 methyltransferase [Chlamydia trachomatis D-EC]
 gi|297749563|gb|ADI52241.1| 16S rRNA m(5)C 967 methyltransferase [Chlamydia trachomatis D-LC]
          Length = 325

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 9/264 (3%)

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
                       I +   E L   YG+E  + ++   +      + V     +       
Sbjct: 46  QFQHLPWPVRYSISDDLAECLTTDYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKV 105

Query: 196 VMLPTGGIRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
           +  P            E    +     F  G++ +QD S+ I        ++ +VLD CA
Sbjct: 106 LPFPCQRGAAPSSLRFEKRYPLQHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCA 165

Query: 251 APGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV 310
             GGK+         VT  D   + LE+ R  L R  +    I          K  F  V
Sbjct: 166 GAGGKSLIFAQRARHVTLHDSRPQALEEARHRLSRSGIKNFTIPS----QPLKKHSFSLV 221

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           +VDAPC+ +G  RRHP+         +  ++  Q ++L + +++V P G +V+  CSL K
Sbjct: 222 VVDAPCTGSGVFRRHPEKKLLFSKQLLHNNSIAQERILKEALAYVAPCGRLVYITCSLMK 281

Query: 371 QDSEEVVQKVLRSSPIPVELVPLN 394
           +++E+    +       V+ V + 
Sbjct: 282 EENEKHTSWMASQGWKCVKEVKIP 305


>gi|195377779|ref|XP_002047665.1| GJ11797 [Drosophila virilis]
 gi|194154823|gb|EDW70007.1| GJ11797 [Drosophila virilis]
          Length = 413

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 20/231 (8%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT  +   +    ++ ALD S  R+  ++  
Sbjct: 185 QNLPSMVCVRVLAPQPGERILDMCAAPGNKTTHIAELMGDVGQIIALDNSASRMRAMQTK 244

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL-------------FDAVLVDAPCSSTGTIRRHPDVL 329
           L           + DA     +               FD +L+DAPCS  G   R     
Sbjct: 245 LGNY--DCIQAHQFDATKAWNEHSAIDSTAPPFASSSFDRILLDAPCS--GLGNRPQLCC 300

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
             + T  +      QR LL Q +  ++PGG++V+S C++ + + E++V   LR  P    
Sbjct: 301 SIKQTKVLQSYPPIQRSLLAQAVPLLRPGGVLVYSTCTITEAECEQLVSWALRKFPQLQL 360

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +          + +    + +  +        +    +    GFF    ++
Sbjct: 361 VDATPKLGAPGLPLPELNAAQCELLQRFGPTNENRVQNLDTVGFFIAKFQK 411


>gi|308174227|ref|YP_003920932.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607091|emb|CBI43462.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554172|gb|AEB24664.1| transcription antitermination protein NusB [Bacillus
           amyloliquefaciens TA208]
 gi|328912564|gb|AEB64160.1| transcription termination factor NusB [Bacillus amyloliquefaciens
           LL3]
          Length = 130

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I+    ++                     +V   +   
Sbjct: 1   MKRRT-AREKALQALFQIDVSDIAPNEAIEHALDGEKTD-------AFFEQLVYGVIEHQ 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            ++D ++   L    L R     + +LR++V +++Y  D+     ++ A+E AKR   + 
Sbjct: 53  VQLDEMISGHLVNWKLDRIANVDRAILRLAVYEMVYTDDIPANVSLNEAIELAKRF-GDD 111

Query: 119 HFAKLVNSILRR 130
             AK VN +L  
Sbjct: 112 KAAKFVNGVLSN 123


>gi|194218912|ref|XP_001916205.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5 [Equus
           caballus]
          Length = 420

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 26/245 (10%)

Query: 214 SLPGFAEGVWWVQDASAS---IPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVT 267
           ++  F    +  Q  ++S    P  L        V+D  AAPG KT+ L        K+ 
Sbjct: 150 AIDYFKRQGFSYQGQASSTAVFPAMLLAPHRVSHVIDADAAPGNKTSHLAALLKKQGKIF 209

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIR 323
           A D+  +RL  +   L R  +   ++ + D     P     +    +L+D  CS +G + 
Sbjct: 210 AFDLDAKRLASMATLLARAGVSCCELAKEDFLAVSPSDQRYRQVQYILLDPSCSGSGMLT 269

Query: 324 RH--PDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQK 379
           R            + +   A FQ++ L   ++F  ++    +V+S CSL ++++E+VV  
Sbjct: 270 RQLEEPGAGAPSKERLHALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVCD 326

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            L+ SP    L P+  + W    +      E  +R +P+             GFF   L 
Sbjct: 327 ALQQSPGAFRLAPVLPS-WPHRGLCTFPGAEHCLRASPETTL--------TGGFFIAVLE 377

Query: 440 RLIQP 444
           R+  P
Sbjct: 378 RVEVP 382


>gi|290985269|ref|XP_002675348.1| predicted protein [Naegleria gruberi]
 gi|284088944|gb|EFC42604.1| predicted protein [Naegleria gruberi]
          Length = 424

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 126/341 (36%), Gaps = 43/341 (12%)

Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI--ETWAHK 192
                  IA +  I    K+        E ++ I +      +I +         T   +
Sbjct: 91  NCHSGSEIAILCDISSQTKKGFRFEKTIEEMIQIDENTKYQNFIYVGNGILKMDRTSIFQ 150

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
            N   +     +      S+  +       ++ Q+  + +   L        +LD+CA P
Sbjct: 151 ANVKGIGLEVTQPFYETCSLNEISQTYYNEFFAQNICSMVVAHLLDPKKGEKILDMCACP 210

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD------------ 297
           GGKT  +   + +  ++   D  K +++ L+   ++L         +D            
Sbjct: 211 GGKTTHISNLMENEGELICCDRQKGKVDLLKKLSEKLGYSVMKPTVLDGTKATRRVNTDS 270

Query: 298 -------------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
                           +  +  FD VLVDAPCS  G  +R          D + K+A +Q
Sbjct: 271 SENQKSKKRKTNEEQVFLEENYFDRVLVDAPCS--GLGQRPTLSFKEFSLDSLKKTAEYQ 328

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM- 403
           RK+L +    +KPGGI+VFS C++   ++EE V  +L +    +EL+  N   + S  + 
Sbjct: 329 RKILAEAFKVLKPGGILVFSTCTISPMENEENVLWMLENFHSKIELLTPNMTAFASEGLS 388

Query: 404 ---AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              + +      +R  P    +         GFFA   ++L
Sbjct: 389 SIISDSSIRSKVLRFDPVTTPE-------TIGFFACKFKKL 422


>gi|317137034|ref|XP_003190009.1| methyltransferase (Ncl1) [Aspergillus oryzae RIB40]
          Length = 874

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 76/248 (30%), Gaps = 77/248 (31%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------------PKKLFDAV 310
            A D   +R   L   + RL      +   DA  Y                     FD +
Sbjct: 220 IANDTDYKRAHMLIHQMKRLSSPNLIVTNHDATMYPSIKLPSPPGPSGKVQNKYLKFDRI 279

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PC+  GT R++  V       + +     Q ++L++ +  +K GG VV+S CS++ 
Sbjct: 280 LADVPCTGDGTPRKNIGVWKEWTPGNALGLYATQVRILVRALQMLKVGGRVVYSTCSMNP 339

Query: 371 QDSEEVVQKVLRSSPIP--------------VELVP------------------------ 392
            ++E VV   +                    ++ VP                        
Sbjct: 340 VENEAVVASAIERCGGAANVRIVDCSNELPGLKRVPGLKTWKVMDRDTRMWNTWEEIEEH 399

Query: 393 -----------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR- 440
                      + +  +        L  E  IRI P + +          GFF   L + 
Sbjct: 400 RASQGISGLGRVAAGMFPPTGENADLPLERCIRIYPHLQD--------TGGFFITVLEKQ 451

Query: 441 ---LIQPK 445
                +P+
Sbjct: 452 SEIRAKPE 459


>gi|169763120|ref|XP_001727460.1| methyltransferase (Ncl1) [Aspergillus oryzae RIB40]
 gi|83770488|dbj|BAE60621.1| unnamed protein product [Aspergillus oryzae]
          Length = 876

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 76/248 (30%), Gaps = 77/248 (31%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------------PKKLFDAV 310
            A D   +R   L   + RL      +   DA  Y                     FD +
Sbjct: 222 IANDTDYKRAHMLIHQMKRLSSPNLIVTNHDATMYPSIKLPSPPGPSGKVQNKYLKFDRI 281

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PC+  GT R++  V       + +     Q ++L++ +  +K GG VV+S CS++ 
Sbjct: 282 LADVPCTGDGTPRKNIGVWKEWTPGNALGLYATQVRILVRALQMLKVGGRVVYSTCSMNP 341

Query: 371 QDSEEVVQKVLRSSPIP--------------VELVP------------------------ 392
            ++E VV   +                    ++ VP                        
Sbjct: 342 VENEAVVASAIERCGGAANVRIVDCSNELPGLKRVPGLKTWKVMDRDTRMWNTWEEIEEH 401

Query: 393 -----------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR- 440
                      + +  +        L  E  IRI P + +          GFF   L + 
Sbjct: 402 RASQGISGLGRVAAGMFPPTGENADLPLERCIRIYPHLQD--------TGGFFITVLEKQ 453

Query: 441 ---LIQPK 445
                +P+
Sbjct: 454 SEIRAKPE 461


>gi|124027719|ref|YP_001013039.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
           butylicus DSM 5456]
 gi|123978413|gb|ABM80694.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
           butylicus DSM 5456]
          Length = 433

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 160/448 (35%), Gaps = 48/448 (10%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILV---RAIV--NVTLRFLPRIDAV 66
           + +L  V+ + +S          +    L     ++L      IV    T+R        
Sbjct: 13  ARVLYHVLTRHVSHDRAYQAAAREYRKALNIVPPRVLYKVSHDIVSDYHTVRH------- 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           ++  +  +    K + +  L +   +  YL       +D      ++  +          
Sbjct: 66  IEKYVYGATGGSKRAARLWLALLGPEKEYL----QPYIDGVERLRRKLLKTLPRH---VE 118

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP-LYIDLT-VKF 184
            +  V        +++A     P WF + +    G      +  +      +I +  +K 
Sbjct: 119 SIEDVIETAGSEAEKLAIKYSFPTWFTKLILQLLGPYSAERLLASLNEEKWWIRVNTLKA 178

Query: 185 DIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237
           D +  A +L    +           + + +  E +  L     G    QD ++++ V+  
Sbjct: 179 DPDRVAARLEEKGVIVRRDRDLPYMLEVVDFSEPLHHLEEMWRGEIVFQDKASAMVVEAL 238

Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292
                  +LDL AAPG K     QL  + A++ A+DVS  RL++ +  L    +     +
Sbjct: 239 EPEPGDVILDLAAAPGVKDTLVMQLTENRARIIAVDVSWARLQRTKRLLRMYGVDISRIE 298

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI-VKSACFQRKLLLQG 351
           +++ D+     +     V++DAPC+S+G + + P +    D  +   +    Q  +L   
Sbjct: 299 VVQADSTTLHLRLKPSKVMLDAPCTSSGAVGKDPAIKLHLDDLNWVARFPPLQAAMLETA 358

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
           + +  P    V++ CS+   + EE V K++      +    + +A+  ++          
Sbjct: 359 LKYRAPA---VYAVCSILPMEGEEQVVKIIERGAASLRRPRIPAAHGYAV---YGDVARK 412

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALR 439
             R  P +            GFF   L 
Sbjct: 413 TARFLPSL--------HQTQGFFISLLE 432


>gi|145592415|ref|YP_001154417.1| Fmu (Sun) domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284183|gb|ABP51765.1| Fmu (Sun) domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 414

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 145/439 (33%), Gaps = 48/439 (10%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L  +  K ++L                 +        +V   +R    +      + 
Sbjct: 13  AKVLYEI-SKGLTLDYAFQKVKRGWRELDSFKV----FYDVVYDAVRHYYFLQFAASKMF 67

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            SS  +       + R     +LY            V   ++    R   K  + +    
Sbjct: 68  GSSGAKAIAKAWFIFR--ADSLLYNK--------DMVYSVRKRLLKRALTKPDHVMAALE 117

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWA 190
              +          S  P      L +F  +E    +     + +++ +  +K D++   
Sbjct: 118 ELREDRARYFSVKYSYHPNIVSTLLSHFPPEEVERLLEAGNHTWIWLRINTLKADVDKAL 177

Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L A        ++            +  L      V   QD ++   V          
Sbjct: 178 RLLEAEAEVEPHPKIPFAVLLKSAKRPVQYLEAVRRFVAVPQDLASIYAVLSLRPEPGDR 237

Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           ++DL AAPG KT+   QL    AK+ A+D+S +R+ ++R  L  L       +       
Sbjct: 238 IIDLAAAPGMKTSLIAQLAEGRAKIVAVDLSAKRVARMRHLLKNLGAGDFVEVVRADSRV 297

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FD  L+DAPC+S+G   + P V      ++  K +  Q+ L+   ++  +    V
Sbjct: 298 LKTRKFDKALLDAPCTSSGAFTKEPAVKIYPRVEEAPKYSAVQKALIKNALALAE---EV 354

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ CS+  Q+ EEV                   A     D+A + +P    R  P +  
Sbjct: 355 VYAVCSILPQEGEEVAASA------------GAEAEKPHPDLAPSYTPGVGGRTFPHIHR 402

Query: 422 KIDGVSSGMDGFFAVALRR 440
                      FF   LR+
Sbjct: 403 SEA--------FFISRLRK 413


>gi|134055744|emb|CAK44117.1| unnamed protein product [Aspergillus niger]
          Length = 771

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 74/245 (30%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------------PKKLFDA 309
            A D   +R   L   + RL      +   DA  +                      FD 
Sbjct: 218 IANDADYKRAHMLIHQMKRLSSPNLIVTNHDATMFPSIRLPPEPAPEGKPVKNKYLKFDR 277

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PC+  GT R++  V    + ++ +     Q ++L++ +  +K GG VV+S CS++
Sbjct: 278 ILADVPCTGDGTARKNWGVWKDWNYNNALGLYATQVRILVRALQMLKVGGRVVYSTCSMN 337

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL------SPEG------------ 411
             ++E V+   L         +   S     +  A  L        EG            
Sbjct: 338 PIENEAVIASALERCGSANVRILDCSNELPGLKRAPGLKTWKVMDREGRMYNSWKEVEER 397

Query: 412 ---------------------------WIRITPDMLEKIDGVSSGMDGFFAVALRRL--- 441
                                       +RI P M +          GFF   L ++   
Sbjct: 398 KEREGISGLGRVAEGMFPPTEDLPLDRCLRIYPHMQD--------TGGFFITVLEKVSEI 449

Query: 442 -IQPK 445
             +P+
Sbjct: 450 RAKPE 454


>gi|325117528|emb|CBZ53080.1| Multisite-specific tRNA m(5)C methyltransferase, related [Neospora
           caninum Liverpool]
          Length = 1028

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 44/179 (24%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VL D PCS+ GT+R+   +     ++  +     Q ++LL+GI   K  G +V+S C
Sbjct: 274 FDCVLCDVPCSADGTLRKARSLWTRWHSNQGLGCHRLQLQILLRGIKLCKVNGRIVYSTC 333

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR------------ 414
           S +  ++E VV   L  +   VELV  +  +          +   + +            
Sbjct: 334 SFNPVENEAVVAAALEKTKGAVELVDCSGVFPALERRPGLHTWRVYWQKEFYDRYEDVPD 393

Query: 415 -------ITP-------------------------DMLEKIDGVSSGMDGFFAVALRRL 441
                  I P                             +     +   GFF   L + 
Sbjct: 394 TSASRQKIRPTMFPQYAASKAAGDGDGKRQEGPPLHRCMRFLPHLNNTGGFFVAVLEKK 452


>gi|242080145|ref|XP_002444841.1| hypothetical protein SORBIDRAFT_07g029085 [Sorghum bicolor]
 gi|241941191|gb|EES14336.1| hypothetical protein SORBIDRAFT_07g029085 [Sorghum bicolor]
          Length = 809

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 123/332 (37%), Gaps = 37/332 (11%)

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
               + ++      +   +N + + +               I  +   E   +   +   
Sbjct: 86  EEYYKVQQIVRKEEWDAFMNVLRKPLPVAFRINACCQFYKDICSKLENEFRRSLESEVSN 145

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
               DA     +    + + +     +L             +    + +           
Sbjct: 146 EHGEDAIAPLPWYPCNLAWHLNFSRKELRKNQALESFHEFLKHESEVGN--------ITR 197

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDVSKR 274
           Q+A + +P        +  +LD+CAAPG KT QL+             GA V A D++ R
Sbjct: 198 QEAVSMVPPLFLNVQPDHHILDMCAAPGSKTFQLLEIIHLSKEPGLLPGALVIANDLNVR 257

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK------------------LFDAVLVDAPC 316
           R + L  N  R+   +  +   +A ++                       FD +L D PC
Sbjct: 258 RCDLLIHNTKRMCTASLIVTNHEAENFPYCSLAKDYLESYKDPCKLQRLEFDRILCDVPC 317

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  GTIR+  D+    ++    +    Q  + ++GI+ +K GG +V+S CS++  ++E V
Sbjct: 318 SGDGTIRKGHDMWRKWNSGMGNQLHLLQVNIAMRGIALLKVGGRMVYSTCSMNPVENEAV 377

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
           + ++LR S   VEL+ ++S   + +      +
Sbjct: 378 IAELLRRSGNSVELLDVSSELPELVRRPGLTT 409


>gi|325187549|emb|CCA22087.1| tRNA (cytosine5)methyltransferase putative [Albugo laibachii Nc14]
          Length = 569

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 25/218 (11%)

Query: 204 RLKELPESIVSLPGF-----AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
            +  + E +     F       G +  Q+  + +PV          VLD+CA+PG KT+Q
Sbjct: 1   MVASMYEDVRQFHAFLLWHTETGCFDRQEVVSMLPVLWLQLEPQNFVLDMCASPGSKTSQ 60

Query: 259 LIVS----------GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------ 302
           ++               V A D+ ++R   L   L R  L    +       +       
Sbjct: 61  IVDFLSTKHESEELDGMVVANDIDRKRGYMLVRRLLRNSLGNAVVSCCSGDQFPGLYDST 120

Query: 303 ----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                   FD VL D PCS  GT+R+   +         +     Q  L ++G + +K G
Sbjct: 121 GTLRSTNTFDRVLCDVPCSGDGTLRKKLRLWMDWHIGQGLTLHSTQIALAMRGAALLKVG 180

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           GI+V+S CS +  ++E VV +VLR S   +ELV L+  
Sbjct: 181 GIMVYSTCSFNPVENEAVVSEVLRRSDGALELVDLSDD 218


>gi|158253936|gb|AAI53973.1| Zgc:77183 protein [Danio rerio]
          Length = 335

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 25/265 (9%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D++  + K+    L    + +            +  G   +Q  ++ +P  L        
Sbjct: 68  DLDRLSGKMFLCDLHLKDLLVFSGKTDFHDHFLYKAGHIILQGKASCLPAFLLNPPVGSH 127

Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           V+D CAAPG KT+    ++ +  K+ A D+  +RL  +   L R  +    +   D    
Sbjct: 128 VIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAKRLSTMSTLLLRAGVTCHKLANQDFLKV 187

Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF--V 355
            P+         +L+D  CS +G +    ++  T++   +   A FQ   L   + F  +
Sbjct: 188 DPQNSEYKEVKYILLDPSCSGSGMVCLRDELPETQEDGRLQALAAFQLHCLNHALQFPQL 247

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +    +V+S CS+  Q++EEVV   L+ +P    LV L   + +     +       +R 
Sbjct: 248 E---RIVYSTCSIHSQENEEVVTACLQRNPG-FRLVHLLPDWPERGHEPLT----QCLR- 298

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                       +   GFF   L R
Sbjct: 299 -------ASTAKTRTHGFFVAMLER 316


>gi|237831111|ref|XP_002364853.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211962517|gb|EEA97712.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221506984|gb|EEE32601.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1097

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 42/177 (23%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VL D PCS+ GT+R+   +     ++  +     Q ++LL+GI   K  G +V+S C
Sbjct: 390 FDCVLCDVPCSADGTLRKARSLWTRWHSNQGLGCHRLQLQILLRGIKLCKVNGRIVYSTC 449

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS------PEGWIRI----- 415
           S +  ++E VV   L  +   VELV  +             +       E + R      
Sbjct: 450 SFNPVENEAVVAAALEKTKGAVELVDCSGVLPTLQRRPGLKTWRVYWQKEFYDRFEDVPQ 509

Query: 416 ------------------------------TP-DMLEKIDGVSSGMDGFFAVALRRL 441
                                          P     +     +   GFF   L + 
Sbjct: 510 TSAARQKVRPTMFPQYAASKAGEGKNRQDGLPLHRCMRFLPHLNNTGGFFVAVLEKK 566


>gi|47220465|emb|CAG03245.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 429

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 99/266 (37%), Gaps = 28/266 (10%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
           T   K     +    + +            +  G   +QD ++ +P  L        V+D
Sbjct: 168 TLKEKEFLRDMHLPELLVFSPRTDFHEHFLYKSGHIILQDKASCLPAYLLDPPAGSHVID 227

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
            CAAPG K++    ++ +  ++ A D+  +RL  +   L R  +  + +   D     PK
Sbjct: 228 ACAAPGNKSSHLAAIMKNKGRLFAFDLDAKRLTTMSTLLLRAGITCQQLANQDFLKVDPK 287

Query: 305 KLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF---QRKLLLQGISF--V 355
                    +L+D  CS +G      +       +   + A     Q + L  G+SF  +
Sbjct: 288 NPQYKDVEYMLLDPSCSGSGMACLPHEESCDDQEEVRARLASLASFQLRCLNHGLSFPRL 347

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           K    +V+S CS+  Q++E+VV   L+ +P    LV L   + +     +       +R 
Sbjct: 348 K---RLVYSTCSIHSQENEQVVAACLQQNPG-FRLVSLLPQWPERGQEPLT----QCLR- 398

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
                       +   GFF     +L
Sbjct: 399 -------ASIQKTRTHGFFVALFEKL 417


>gi|15921679|ref|NP_377348.1| Sun family protein [Sulfolobus tokodaii str. 7]
 gi|15622466|dbj|BAB66457.1| 349aa long hypothetical sun protein [Sulfolobus tokodaii str. 7]
          Length = 349

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 42/233 (18%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALD 270
             L    +G   +Q  ++     L     N  ++D+ A PGGK   +     +      D
Sbjct: 152 ADLEYVKDGSLILQGKASMYVAHLLDPKPNEKIIDMTAYPGGKLTHIYQLEPRSKVIGFD 211

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPD 327
            +K+++++LR  + ++ +   ++   D+            D V++D PCS+ G     P 
Sbjct: 212 HTKKKVDELREKVKKMKM-NIEVYLADSRYLYEGFGLRDVDKVIIDPPCSALGI---RPK 267

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           V   +  +DI+    +QR+ +      +K  GI+V+S C++   ++E+V+          
Sbjct: 268 VYDRKTKEDIINFHNYQRQFINSAYKILKKNGILVYSTCTVTTWENEKVIDD------ER 321

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E+  +                   IR  P++          M GFF   L +
Sbjct: 322 FEVEDI-------------------IRFHPNI--------HDMTGFFIAKLIK 347


>gi|254569854|ref|XP_002492037.1| Putative protein of unknown function with seven beta-strand
           methyltransferase motif [Pichia pastoris GS115]
 gi|238031834|emb|CAY69757.1| Putative protein of unknown function with seven beta-strand
           methyltransferase motif [Pichia pastoris GS115]
 gi|328351472|emb|CCA37871.1| hypothetical protein PP7435_Chr2-0174 [Pichia pastoris CBS 7435]
          Length = 436

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 139/419 (33%), Gaps = 53/419 (12%)

Query: 49  VRAIVNVTLRFLPRIDAVL--DFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD 105
           V A+V    R+   +  ++    +L    +  K+     LL +    +L+          
Sbjct: 40  VYALVYSASRYKKFLKQIIRNSKLLEDKKIRAKEP----LLILMAHDLLFS--------- 86

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
              +  +             +   R+  E  +L  +     +      +     + +  +
Sbjct: 87  ---KNGRIQSGKHPLKDAFLAHKTRLQAELTKLKIKYKVKDLEELIEDDDTPVRWVRANL 143

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
           L  S       +  L      +               +      E I S   + +G   +
Sbjct: 144 LKTSREKFLNEFKHLIQVESFQELEVGKIYHDQYIPNLFGVHPREKITSTDAYLKGRLII 203

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRLEKLRC 281
           QD ++  P  +        ++D C+APG KT  L          + A +   +R E L+ 
Sbjct: 204 QDRASCFPAHILHPSPGDKIIDTCSAPGNKTTHLASYLGNRPDSIIAFEKDPKRAEVLKT 263

Query: 282 NLDR-LHLYAEDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRR---HPDVLWTRDTD 335
              +   L   DI   D     P+   D    ++D  CS +G   R     +   T D  
Sbjct: 264 LCAKAGGLSCIDIQVGDFTATNPEDYTDIDGFVIDPSCSGSGIFGRAFEENEQDETYDDT 323

Query: 336 DIVKSACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSEEVVQKVLRSSPIPV------ 388
            + K A FQ  ++   + F  P    + +S CS+  Q++E VV  +L+ S +        
Sbjct: 324 RLSKLASFQFTIVRHAMMF--PNAKKLTYSTCSVHPQENERVVVDLLKDSQVQAKGWKLC 381

Query: 389 ---ELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              E++P  +      + +   +P    EG IR              G  GFF VA +R
Sbjct: 382 TRDEVIPDWNRRGFEEEFSTFENPKELAEGCIR--------SKPKEDGGIGFFVVAFKR 432


>gi|70608021|ref|YP_256891.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius DSM
           639]
 gi|68568669|gb|AAY81598.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius DSM
           639]
          Length = 350

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 134/345 (38%), Gaps = 46/345 (13%)

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
           + A E +K+   + +       +  +  R+K++   R       PEW + +L   Y    
Sbjct: 39  NEAYELSKKLILSYYS------LTFKTRRKKVKEFLRGKYEVKFPEWMEIQLSKIYDVNS 92

Query: 165 VLAISDACISPLYIDLT-VKFDIETWAHKLNA----VMLPTGGIRLKELPESIVSLPGFA 219
           +           +  +  +  D E     LN     V          +  ++I +   F 
Sbjct: 93  LKYWLMNKQKFTWFRVNTLIADEEKVIKNLNDKGVDVEKDNDIPYAYKTLDNITNTTEFK 152

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRL 276
           E    VQD ++   V+      N  +LDL +APG K +Q++    + AK+   DV K RL
Sbjct: 153 ENKIIVQDKASMAVVEALKPEPNDHILDLASAPGIKVSQIMQLTENKAKLIVADVDKERL 212

Query: 277 EKLRCNLDRLHLYAEDIIEM---DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           EK R    +  +   D +E+   D+     K+  + VL+DAPCSS+G I   P +L    
Sbjct: 213 EKERLLFKKFGV-NVDRLELLLVDSSSLAIKRKVNKVLLDAPCSSSGAIWNEPTILLRLT 271

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + ++  A  QRKLL      VK G  V+++ CS+  ++ E +V       P+       
Sbjct: 272 REKVLHYADQQRKLLNNA---VKLGDEVIYATCSMFMEEGELIVNDYTTQRPLSF----- 323

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                        L  +  +R  P             +GFF   L
Sbjct: 324 ------------GLDVKNGVRFVP--------YLHDTEGFFITKL 348


>gi|145603390|ref|XP_001404527.1| hypothetical protein MGG_13217 [Magnaporthe oryzae 70-15]
 gi|145011631|gb|EDJ96287.1| hypothetical protein MGG_13217 [Magnaporthe oryzae 70-15]
          Length = 819

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/411 (14%), Positives = 113/411 (27%), Gaps = 84/411 (20%)

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
              +  K   E     +   +      + ++    R  G         + +E  Y  E  
Sbjct: 36  ENEKLQKFYDELLQLPEEERAEFWTAYQRELPNSFRFCGSKGHASEVMKLMETRYIPEIT 95

Query: 166 LAISDACISPLYIDLTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPG 217
               +         +    D+  W          K          +  +    +I     
Sbjct: 96  EIAYEGQPVDPPKAVPWYPDLLAWWMTTPKNVVRKFPPFAKFQKFLVSETSVGNISRQEV 155

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277
               +    +  ++              ++  A           +   + A D   +R  
Sbjct: 156 VKARISNFMNNLSADQSANTAP-----TVEDGADLEVDAGDDGRATGMLIANDAEYKRCH 210

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKK------------LFDAVLVDAPCSSTGTIRRH 325
            L   L RL      +   DA  Y   +             FD +L D PCS  GT+R++
Sbjct: 211 MLVHQLKRLSSPNLIVTNHDATLYPSIRIPSSDPNTNAYLKFDRILADVPCSGDGTLRKN 270

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV----- 380
            ++         +     Q ++L++ +  +K GG +V+S CS++  ++E V+        
Sbjct: 271 VNLWREWVPGSALGLHLTQTRILVRALQMLKVGGKMVYSTCSMNPVENESVINAAIDRCG 330

Query: 381 ----------------LRSSPI---------------PVELVPLNSAYWKSIDMAMALSP 409
                           L+  P                  E V           +   LS 
Sbjct: 331 GLNNVDILDSSDKLPGLKRRPGMKTWKVMDKSGRVWNNWEEVEGQLEVKDGKSLTGKLSK 390

Query: 410 -----------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR----LIQPK 445
                      E  +RI P + +          GFF V L++      +P+
Sbjct: 391 TMFPSGTDLPLERCMRIYPHLQD--------TGGFFIVVLQKKAEFKAKPE 433


>gi|294869080|ref|XP_002765752.1| protein nucleolar, putative [Perkinsus marinus ATCC 50983]
 gi|239865915|gb|EEQ98469.1| protein nucleolar, putative [Perkinsus marinus ATCC 50983]
          Length = 530

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 53/228 (23%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSST 319
            A D+  +R   L   + RL+  A  ++  DA  +         + LFD VL D PC+S 
Sbjct: 60  LANDIEWKRANMLAHQVLRLNSPASGVVNFDASCFPVLWDEEGKQVLFDRVLCDVPCTSD 119

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++PD+     T + +     Q ++LL+G+   KPGG VV+S CSL+  + E VV  
Sbjct: 120 GTMRKNPDIWREWKTGNSIAIHHRQFRILLRGLELAKPGGRVVYSTCSLNPIEDEAVVAA 179

Query: 380 VLRSSPIPVELVP-------------------------------LNSAYWKSIDMAMALS 408
            L +    V+LV                                       +       +
Sbjct: 180 ALANFNGKVKLVAGPAVGNATYSIAAPRGEMYSGGRPGLSTWTVSPPGDAATHIDKYEDT 239

Query: 409 PEGWIR-----ITP----------DMLEKIDGVSSGMDGFFAVALRRL 441
           P+ + +     + P              +         GFF  A  ++
Sbjct: 240 PDQYKKKMLSSMWPPTDDSIKAQLHHCRRFFPHDINAGGFFVAAFEKV 287


>gi|304382974|ref|ZP_07365455.1| NOL1/NOP2/sun family protein [Prevotella marshii DSM 16973]
 gi|304335893|gb|EFM02142.1| NOL1/NOP2/sun family protein [Prevotella marshii DSM 16973]
          Length = 471

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 15/255 (5%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLC 249
             +A +                  P    G ++VQ+AS+    ++      + +++LDLC
Sbjct: 52  DFDARVPWCSEGVYLRTRPPFTFDPLLHAGCYYVQEASSMFLHRILRQYVTSPVTMLDLC 111

Query: 250 AAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKK 305
           AAPGGK+        +G+ +   +  + R   L  NL +       +        +    
Sbjct: 112 AAPGGKSTVARAALPAGSLLFCNEPVRSRAAVLTENLMKYGHPDVVVSCNSPVDYHRSGL 171

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
           LFD +L D PCS  G  R+    +      ++   +  QR ++ +    ++ GG+ ++S 
Sbjct: 172 LFDVILADVPCSGEGMFRKDESTMAEWSVQNVTACSRRQRDIVSETWHCLRGGGLFIYST 231

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           C+ +  ++EE V  ++R     V  V +   +  +  +    +   + R  P        
Sbjct: 232 CTFNTMENEENVAWIVRELGAEVLPVDVEPEWGITGSLLSGYAAPVY-RFLPGKTRGE-- 288

Query: 426 VSSGMDGFFAVALRR 440
                 G F   LR+
Sbjct: 289 ------GLFVAVLRK 297


>gi|154686696|ref|YP_001421857.1| transcription antitermination protein NusB [Bacillus
           amyloliquefaciens FZB42]
 gi|166215663|sp|A7Z6K0|NUSB_BACA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|154352547|gb|ABS74626.1| NusB [Bacillus amyloliquefaciens FZB42]
          Length = 130

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I+    ++                     +V   +   
Sbjct: 1   MKRRT-AREKALQALFQIDVSDIAPNDAIEHALDGEKTD-------AFFEQLVYGVIEHQ 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            ++D ++   L    L R     + +LR++V +++Y  D+     ++ A+E AKR   + 
Sbjct: 53  VQLDEMISGHLVNWKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELAKRF-GDD 111

Query: 119 HFAKLVNSILRR 130
             AK VN +L  
Sbjct: 112 KAAKFVNGVLSN 123


>gi|296242154|ref|YP_003649641.1| ribosomal RNA methyltransferase NOP2 [Thermosphaera aggregans DSM
           11486]
 gi|296094738|gb|ADG90689.1| ribosomal RNA methyltransferase NOP2 [Thermosphaera aggregans DSM
           11486]
          Length = 340

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 107/271 (39%), Gaps = 24/271 (8%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIV---SLPGFAEGVWWVQDASASIPVQLFGTLN 241
            +E    KL  +       ++ E PE      +L       +  +D+S+ +PV L     
Sbjct: 76  SLEEKGFKLERLSWCDSAFKIIEAPEQPSPGATLEYLKGYYYLHRDSSSLLPVLLLTHEY 135

Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
           +  +LD CAAPGGKT      +     V A D+  RRL  L  ++ R+ +    +   DA
Sbjct: 136 SGDILDACAAPGGKTTFLAEKVYGKGIVYANDLVLRRLRSLIGHITRMRIENVVVTWSDA 195

Query: 299 FDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   +    +L+DAPCS  G I   P         ++      + +LL   I  + 
Sbjct: 196 RKISKVFNRKIGRILLDAPCSGEGRISVDPGRRTRTSIYELALMVKREIELLDSLIDMLD 255

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------- 409
             GI+ +S CS+  +++E VV K+L      VE+VP     ++                 
Sbjct: 256 DEGIIAYSTCSIAPEENEYVVSKILDKRK-DVEVVPPPLKLFEYSPWIKRYGGMVFHEEL 314

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +  +R+ P +         G  GF    LRR
Sbjct: 315 DKCVRLWPHV--------HGTFGFTTCLLRR 337


>gi|303390194|ref|XP_003073328.1| putative methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302474|gb|ADM11968.1| putative methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 515

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 100/259 (38%), Gaps = 46/259 (17%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278
           G+   Q+  + IPV L     +  V+D+CAAPG KT Q   IV+   V A D + +RL+ 
Sbjct: 93  GLIQRQEIVSMIPVSLMELKKDSKVIDMCAAPGSKTKQILDIVTNGLVIANDSNGKRLKV 152

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK------LFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           L     +    +  I + DA  +           FD V  D  CSS GTIR+ P +L   
Sbjct: 153 LVSETSKKPNGSLIISKHDATIFPNVYEGGKLVRFDRVFCDVVCSSDGTIRKSPGILEGW 212

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-------SP 385
                      Q ++L +G + V  GG+V +S CSL+  ++E VVQK+L           
Sbjct: 213 KLSRTTGLFNTQFRILKRGCNLVAEGGLVSYSTCSLNPIENECVVQKILLEGEFELVDFR 272

Query: 386 IPVELVPLN-----------------------SAYWKSIDMAMALSPEGWIRITPDMLEK 422
               LVP                                   + +  E  IR+ P   + 
Sbjct: 273 NDPRLVPFPTCGDGTRLVFREGLRKWGTEDLIFKNPDYRPSDVDVGLEKCIRLYPHDQD- 331

Query: 423 IDGVSSGMDGFFAVALRRL 441
                    GFF   LR+ 
Sbjct: 332 -------TGGFFIAILRKK 343


>gi|294878008|ref|XP_002768237.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239870434|gb|EER00955.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 723

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 125/420 (29%), Gaps = 69/420 (16%)

Query: 91  AQILYLDVADYAVVDLAVEQAKRDKENR--------HFAKLVNSILRRVSREKIELLQRI 142
            ++ Y ++          +  K   +            + L   +  R      E  Q  
Sbjct: 61  WEMYYSNMPGLFKSREDFDAMKETMKTPLPVSIRINPSSPLWRDVANRCEELSKEPTQSA 120

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT-- 200
            G     +   ++       +                       +         +     
Sbjct: 121 MGEDDDVDETVKKGMQSRALDWYFDGFKESTPRRCWQWDALGRKDVKKKAELKELKQWFV 180

Query: 201 --GGIRLKELPESIVSLPG----FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                      E++  +P            V D  A+   +    + +LS     ++   
Sbjct: 181 SQELRGCVARQEAVSMIPALFAKIDRPDLTVMDMCAAPGSKTCQMIESLSNTSSSSSSSS 240

Query: 255 KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLF 307
            + +  +    V A D+  +R   L   + RL+  A  ++  DA  +         + LF
Sbjct: 241 CSPEFSIPEGLVLANDIEWKRANMLAHQVLRLNSPASGVVNFDASCFPVLWDEEGKQVLF 300

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VL D PC+S GT+R++PD+     T + +     Q ++LL+G+   KPGG VV+S CS
Sbjct: 301 DRVLCDVPCTSDGTMRKNPDIWREWKTGNSIAIHHRQFRILLRGLELAKPGGRVVYSTCS 360

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVP-------------------------------LNSA 396
           L+  + E VV   L +    V+LV                                    
Sbjct: 361 LNPIEDEAVVAAALANFNGEVKLVAGPAVGHATYSIAAPRGEMYSGGRPGLSTWTVSPPG 420

Query: 397 YWKSIDMAMALSPEGWIR-----ITP----------DMLEKIDGVSSGMDGFFAVALRRL 441
              +       +P+ + +     + P              +         GFF  A  ++
Sbjct: 421 DAATHIDKYEDTPDQYKKKMLSSMWPPTDESIKAQLHHCRRFFPHDINAGGFFVAAFEKV 480


>gi|300175418|emb|CBK20729.2| unnamed protein product [Blastocystis hominis]
          Length = 733

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 100/322 (31%), Gaps = 77/322 (23%)

Query: 201 GGIRLKELPESIVSLPGFAE-----------GVWWVQDASASIPVQLFGTLNNLSVLDLC 249
           G  ++    + +  +  F +           G    Q+A + +P        +  VLD+C
Sbjct: 112 GAWQIDLHRKKLRKVEAFKDLHKYMIALTLSGHIGRQEAVSMLPPMFLDVQKDDIVLDMC 171

Query: 250 AAPGGKTAQ------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           AAPG KT Q             V A D   +R   L   +  L      +       Y  
Sbjct: 172 AAPGSKTLQILEKLQKQDGHGIVVANDADSKRAYLLVHQVSHLKSGRIIVTTHLGQQYPF 231

Query: 304 --------------------------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
                                        FD +L D PCS  GT+R+ PD+    +    
Sbjct: 232 LRSLPRGSVTPRFDEEPRVSADSTCQSGSFDRILCDVPCSGDGTLRKAPDLWKKWNIKYS 291

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           +     Q  + L+G+  +K GG +V+S CSL+  + E VV  +LR     V +V +   Y
Sbjct: 292 LALHPLQIAITLRGLKLLKVGGRLVYSTCSLNPIEDEAVVMALLRRCGGAVRIVDVRDRY 351

Query: 398 WKSIDMA---------------------------------MALSPEGWIRITPDMLEKID 424
            K    A                                    S E       +   +  
Sbjct: 352 PKLRRAAGLFQWQVVDGQNQPFPRFDAIPAENRRLYRESMFPPSEEACREAHLEWAMRFL 411

Query: 425 GVSSGMDGFFAVALRRLIQ-PK 445
                  GFF   L +  + PK
Sbjct: 412 PHHQDTGGFFVCVLEKTAEIPK 433


>gi|329576773|gb|EGG58266.1| hypothetical protein HMPREF9520_01374 [Enterococcus faecalis
           TX1467]
          Length = 112

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           +RR PD+ + +  +D       Q ++L      +K  GI+V+S C++  ++++EVV   L
Sbjct: 1   MRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITSEENQEVVAAFL 60

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              P   ++  + +   +      A+  E  + + P             DGFF   +R++
Sbjct: 61  AKHPEFEKIEIVANENVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKV 106

Query: 442 IQPK 445
              +
Sbjct: 107 SSNE 110


>gi|198450934|ref|XP_001358184.2| GA18969 [Drosophila pseudoobscura pseudoobscura]
 gi|198131259|gb|EAL27321.2| GA18969 [Drosophila pseudoobscura pseudoobscura]
          Length = 433

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 133/409 (32%), Gaps = 49/409 (11%)

Query: 59  FLPRIDAVLDFVLISS------------LPRKKYSLQQLLRVSVAQILYL------DVAD 100
            +  + AVL     +             L         L +V V ++++       D   
Sbjct: 42  RVRSLQAVLKHYSDNRGAVDNAIEETSLLKDNPNLDSALAKVLVTELIFGRGQLNGDSKP 101

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY 160
              V    E+ ++     +  K   +         +  +          EW ++ L    
Sbjct: 102 VQTVREYKERLEKAISGSNIQKKEPNPRYVRVNTNLLSIAEALEYLSSEEWRRKELPAEA 161

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
                L    A     ++         T  H    ++            + + S      
Sbjct: 162 TYADFLTAIRAMEEDEFM---------TDLHVEGVLIFHPKWAHYWAGHDFVHS------ 206

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277
             + +Q+ + S+  +L       +VLDLCAAPG KT  +     +  ++ A++ S+ R  
Sbjct: 207 KKFILQNKATSLAAELLAPPVGSTVLDLCAAPGMKTLHMCNVMQNKGRIYAVEQSQERYR 266

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L    +         I  DA      +  D   +LVD  CS  G   R       +D  
Sbjct: 267 ALCDITNEAGCEIVTPILGDALTMDATRCPDVEYILVDPSCSGNGMQSRISVCDEQKDDK 326

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VP 392
            + K A  Q K+L   +S       + +  CSL K+++E+VVQ+ L+ +P    L     
Sbjct: 327 RLYKLAGLQIKILSHAMSAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFKMLSCKKA 386

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           L + +    D   A   +  +   PD        S   DG F     + 
Sbjct: 387 LRNKWQNVGDKEYAKIGKNCLYCLPD--------SDLTDGIFLALFEKK 427


>gi|225681882|gb|EEH20166.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Paracoccidioides
           brasiliensis Pb03]
          Length = 756

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 60/239 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL+     +   DA  Y   K                  FD 
Sbjct: 124 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSIKLPSLPPPEGKPVRNRYLKFDR 183

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L + +  +K GG VV+S CS++
Sbjct: 184 ILADVPCSGDGTSRKNVNVWKDWNPSNALGLHTTQCRILTRALQMLKVGGRVVYSTCSMN 243

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRITPD------ 418
             ++E V+  V+     P  V ++  ++      +   +      +   R   +      
Sbjct: 244 PVENEAVIASVIDRCGGPSKVHIMDCSNELPTLKRFPGLKSWSVMDKQGRTWTNWKDVED 303

Query: 419 ----------------------------MLEKIDGVSSGMDGFFAVALRR----LIQPK 445
                                          +I         FF   L +      +P+
Sbjct: 304 AVSQGDETLSRMVEGMFSPSEEEGIDLSRCMRIYPHQQDTGAFFIAVLEKRSDIKARPE 362


>gi|119872179|ref|YP_930186.1| PUA domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119673587|gb|ABL87843.1| PUA domain containing protein [Pyrobaculum islandicum DSM 4184]
          Length = 376

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 29/233 (12%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271
           I  LP + EG+ + Q   A     +       + +DL AAPGGK   L   G ++ A+D 
Sbjct: 167 IRDLPEYKEGLLYSQSLPAIAVGHVAKRARASTAVDLNAAPGGKATHLAQIGLRIIAVDR 226

Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           S  ++EKL+  + RL L    D++  D+       P+   D  LVD PC+  G     P 
Sbjct: 227 SWPKIEKLKEEVKRLGLADRIDVVLHDSRYLDRDFPRLAADLALVDPPCTDIGV---RPK 283

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +      +     + +Q + L      +K    V++S C+L   ++E+V++KV       
Sbjct: 284 IYHKVTIEMAKTLSRYQIQFLKTA---LKIAPTVIYSTCTLTYIENEDVIRKV------G 334

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            E V         I       PE   R  P +            GFF   LRR
Sbjct: 335 AEPVDT----GLEIGAPGWGCPE-CRRFLPHI--------HNTPGFFIALLRR 374


>gi|195143743|ref|XP_002012857.1| GL23704 [Drosophila persimilis]
 gi|194101800|gb|EDW23843.1| GL23704 [Drosophila persimilis]
          Length = 433

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 133/409 (32%), Gaps = 49/409 (11%)

Query: 59  FLPRIDAVLDFVLISS------------LPRKKYSLQQLLRVSVAQILYL------DVAD 100
            +  + AVL     +             L         L +V V ++++       D   
Sbjct: 42  RVRSLQAVLKHYSDNRGAVDNAIEETNLLKDNPNLDSALAKVLVTELIFGRGQLNGDSKP 101

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY 160
              V    E+ ++     +  K   +         +  +          EW ++ L    
Sbjct: 102 VQTVREYKERLEKAISGSNIQKKEPNPRYVRVNTNLLSIAEALEYLSSEEWRRKELPAEA 161

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
                L    A     ++         T  H    ++            + + S      
Sbjct: 162 TYADFLTAIRAMEEDEFM---------TDLHVEGVLIFHPKWAHYWAGHDFVHS------ 206

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277
             + +Q+ + S+  +L       +VLDLCAAPG KT  +     +  ++ A++ S+ R  
Sbjct: 207 KKFILQNKATSLAAELLAPPVGSTVLDLCAAPGMKTLHMCNVMQNKGRIYAVEQSQERYR 266

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTD 335
            L    +         I  DA      +  D   +LVD  CS  G   R       +D  
Sbjct: 267 ALCDITNEAGCEIVTPILGDALTMDATRCPDVEYILVDPSCSGNGMQSRISVCDEQKDDK 326

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VP 392
            + K A  Q K+L   +S       + +  CSL K+++E+VVQ+ L+ +P    L     
Sbjct: 327 RLYKLAGLQIKILSHAMSAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFKMLSCKKA 386

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           L + +    D   A   +  +   PD        S   DG F     + 
Sbjct: 387 LRNKWQNVGDKEYAKIGKNCLYCLPD--------SDLTDGIFLALFEKK 427


>gi|326480404|gb|EGE04414.1| methyltransferase ncl1 [Trichophyton equinum CBS 127.97]
          Length = 827

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 33/211 (15%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310
            A D   +R   L   + RL+     +   DA  Y   K                 FD +
Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGHPAKNRYLKFDRI 299

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT R++ ++    +  + +     Q ++L + +  +K GG VV+S CS++ 
Sbjct: 300 LADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359

Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALS---PEGWIRITPDMLEKIDG 425
            ++E ++  V+        VE+V   +   +        +    +   RI  +  E  + 
Sbjct: 360 IENEAIISHVIDRCGGSSKVEIVDCENQLPELKRRPGLTTWKIMDKTGRIYENWAEAEEE 419

Query: 426 VSS--------GMDGFFAVALRR----LIQP 444
           V             GFF   L +     ++P
Sbjct: 420 VRKLNPAASRLDTGGFFITVLEKKREIKVKP 450


>gi|296418531|ref|XP_002838884.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634867|emb|CAZ83075.1| unnamed protein product [Tuber melanosporum]
          Length = 781

 Score =  103 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 103/334 (30%), Gaps = 93/334 (27%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            +L     +I   P F                  Q+A + IP  +     +  VLD+CAA
Sbjct: 124 WQLSVGKSTIRRCPPFKRFQNFLVAETTVGNISRQEAVSMIPPLVMDIQPHHVVLDMCAA 183

Query: 252 PGGKTAQLIVSGA--------------------------KVTALDVSKRRLEKLRCNLDR 285
           PG KTAQ+I +                             V A D   +R   L     R
Sbjct: 184 PGSKTAQIIEAIHANEETHVRAAIQDQSIDDGSGGRPAGLVIANDADYKRSHMLIHQTKR 243

Query: 286 LHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           L+     +   DA  Y                FD +L D PCS  GT R++ +V    + 
Sbjct: 244 LNSPNLIVTNHDATMYPSLLVKNEDGRKEYLKFDRILADVPCSGDGTARKNYNVWRDWNP 303

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP--------I 386
              +     Q ++L++G+  +K  G +V+S CS++  ++E VV   +             
Sbjct: 304 LGAIGLHLTQVRILVRGLQMLKVSGRIVYSTCSMNPIENEAVVAAAIDRCGGLGKVNILD 363

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWI------------------RITPDMLE------- 421
             + +P              +  +G                    RI P M         
Sbjct: 364 CSDRLPELKRRPGVKGGWRVMDKDGSWFSSYEQVDKADMREARLSRIVPSMFPSEDGKSD 423

Query: 422 ------------KIDGVSSGMDGFFAVALRRLIQ 443
                       ++        GFF   L +  +
Sbjct: 424 EDESRVPLERCMRVYPHLQDTGGFFITVLEKRSE 457


>gi|157132828|ref|XP_001662658.1| williams-beuren syndrome critical region protein [Aedes aegypti]
 gi|108881621|gb|EAT45846.1| williams-beuren syndrome critical region protein [Aedes aegypti]
          Length = 620

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 154/439 (35%), Gaps = 35/439 (7%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +S +L  V+ +R ++  L+  E      + L+  D ILV          L +ID +L 
Sbjct: 15  RYASKILRRVVEERCNVKSLILEERHIRKGKGLAIMDLILV---------HLKQIDELLK 65

Query: 69  FV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
              L+   PR    L ++L   +A++++    D     L V+  KR +E    A     +
Sbjct: 66  RTELLVKEPRLNPWLAKVL---IAELIFGRG-DLTGESLPVQCVKRYQEELKEALGQLDV 121

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
                 +  E        +++ +    RL    G   V    +     L   +    D E
Sbjct: 122 APAKMLDFKEPRYVRINTNVLAQPGAIRLLQEEGWVLVEEEFEKYGDFLE-RVKKLGDSE 180

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
                    ML            ++       +  + +Q+ +  IP  L        VLD
Sbjct: 181 FIVDFHFKEMLVFPNSAKNYWARAME-----LKQKFVLQNKACIIPTYLLNPPKKSVVLD 235

Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           +CAAPG KT  L   + +  ++ A++    R + L        +      +         
Sbjct: 236 MCAAPGLKTTHLANLMKNKGRIYAVERDANRYKLLCDYAADFGVIKAINDDCMLVGEDQA 295

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
              + +L+D  CS +G + R   +    D   + +    Q KLL   ++       +V+S
Sbjct: 296 PGVEYILLDPSCSGSGMVSR-LKLNEEYDKQRLYRLGGLQYKLLCHAMNAFPSAKRIVYS 354

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CS+  +++E++VQ  L+      +LV       K      +          P + EK  
Sbjct: 355 TCSIFPEENEDIVQGALK-HNGHFKLVDAKERLGKEWHNVGSTD-------YPGIGEKCL 406

Query: 425 GVSSGMD---GFFAVALRR 440
              S  D   G F     R
Sbjct: 407 YARSESDLTIGMFVAVFER 425


>gi|302791864|ref|XP_002977698.1| hypothetical protein SELMODRAFT_107682 [Selaginella moellendorffii]
 gi|300154401|gb|EFJ21036.1| hypothetical protein SELMODRAFT_107682 [Selaginella moellendorffii]
          Length = 425

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 111/289 (38%), Gaps = 27/289 (9%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL--PGFAEGVWWVQD 227
            A +   ++ L +K ++      L            + +  + + +      E +  +  
Sbjct: 113 KAALRAAFVRLMMKKNVTEIDGLLPPETRQIQSYIPRYVRVNTLQMTVDEALEKLEELGS 172

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284
            ++ IP  +     +  VLD CA+PG KT  L   +    +VTA ++ ++RL+ L+  + 
Sbjct: 173 KASCIPAHVLCPDLDWEVLDACASPGNKTVHLAALMKGKGRVTACELHRKRLQVLQDTVK 232

Query: 285 RLHLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDT------ 334
           R       +   D     P         A+L+D  CS +GT  +  D L           
Sbjct: 233 RAGANNIQVKHQDFLKLDPNASDYSKVRAILLDPSCSGSGTTVQRMDHLLPVANGQSFVF 292

Query: 335 ---DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                I + A FQ+  L   +SF      VV+S CS++++++E+V+Q VL  +      +
Sbjct: 293 SVFQRIDRLASFQKAALCHALSFPAVE-RVVYSTCSVNQRENEDVIQSVLEHARSHKFKL 351

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 W    + +    +  +R         D +    DGFF     R
Sbjct: 352 GTVLPDWPHRGLPVFDGAQHLLRT--------DALRDKTDGFFVALFVR 392


>gi|297526564|ref|YP_003668588.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255480|gb|ADI31689.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 415

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 119/314 (37%), Gaps = 31/314 (9%)

Query: 146 SIIPEWFKERLENFYGKERV-LAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGI 203
              PE+  + L N   ++ +   +    +   ++ +  +K   E+    L    +     
Sbjct: 114 HSYPEFLVKDLLNHMSEKELDKMLKKLNVRKRWLRINTLKTSYESAYKCLEETGIIYQRK 173

Query: 204 RLKELP--------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
              +          + I        G    QD +++  V+      +   LD C+APG K
Sbjct: 174 NFPDYMVYVEHPKWDPIGHNKCVKNGYVVPQDLASAYVVEALELDRDKYFLDACSAPGLK 233

Query: 256 T---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAV 310
                 L  +     A+D+S +R+   +  L RL + +    +I  D+ +    ++FD  
Sbjct: 234 YSLAFMLTDNKLYGFAIDLSSKRMRTGQILLKRLGVDSSRTILINADSGNIKLSRVFDYA 293

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           LVDAPCS  G++   P V    +      +    Q ++L   + + +    VV++ CS+ 
Sbjct: 294 LVDAPCSGLGSVYSDPAVKLNTNRRSKLEQYHKKQYRILKNILRYAR---RVVYATCSIH 350

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             + EEV+++++  +    E   +N     +      +S     R+ P  +         
Sbjct: 351 PLEGEEVIERIV--NEGLAETNKINLPGLSTAYKGFNIS-NSTYRVLPHTMNSQ------ 401

Query: 430 MDGFFAVALR-RLI 442
             GF+   L  ++ 
Sbjct: 402 --GFYIAVLESKVA 413


>gi|281421193|ref|ZP_06252192.1| NOL1/NOP2/sun family protein [Prevotella copri DSM 18205]
 gi|281404728|gb|EFB35408.1| NOL1/NOP2/sun family protein [Prevotella copri DSM 18205]
          Length = 474

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 106/291 (36%), Gaps = 18/291 (6%)

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215
           L      +R+        +P  I +      +        +       R           
Sbjct: 15  LMGEKLYQRLEHAILEEEAPTSIRINPFKCKDADGE---PIPWCPETGRYLSTRPGFTFD 71

Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
           P    G+++VQ+AS+              + +LDLCAAPGGK+  +      G+ + + +
Sbjct: 72  PLLHAGLYYVQEASSMFVDMAIRQFVKEPVMMLDLCAAPGGKSTAVRAALPEGSLLFSNE 131

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329
             + R + L  N+ +       +      DY   K  FD +L D PCS  G  R+    +
Sbjct: 132 PMRTRSQILAENVQKFGHPDMIVTNNYPRDYKKSKLQFDVILTDVPCSGEGMFRKDEGAI 191

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
               T ++      QR+++    + +KPGGI+++S C+ +  + EE V  +       V 
Sbjct: 192 GEWSTQNVNNCWQLQREIVSDIWNCLKPGGILIYSTCTFNAHEDEENVDWICEELGAEVM 251

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +      W +I   +  +     R  P +            G F   L++
Sbjct: 252 ALEGVEDAW-NITRNLTGTDFPVYRFIPGVSRGE--------GLFMAILKK 293


>gi|145519744|ref|XP_001445733.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413199|emb|CAK78336.1| unnamed protein product [Paramecium tetraurelia]
          Length = 776

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 114/328 (34%), Gaps = 48/328 (14%)

Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174
             N++ +K  N+  ++V     +   +   +         R       E           
Sbjct: 4   HRNKNQSKYENAPQKKVKTNHWDQDNQQICVVQFENPIFRRFYEIQLPEITSEEFQIFWQ 63

Query: 175 PLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW--- 224
            L + L V F I       E+   +L    L    +  +E+ E I  +  +   + W   
Sbjct: 64  SLSLPLPVTFRINPSQYKYESLIERLQDGSLIKDMVNEEEIVEPIREIKWYPNHLVWESK 123

Query: 225 -----------------------------VQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
                                         Q+  + +P  L        VLD+CAAPG K
Sbjct: 124 VPKKSLRKSAALTKLHQFIQKCNSTGLLTRQELVSMLPPLLLDPQPTDYVLDMCAAPGSK 183

Query: 256 TAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLF 307
           T Q   +V+   + A DV  +R   L   L R+      +    A  Y        +  F
Sbjct: 184 TCQLLEVVTKGLIVANDVDAKRAYMLSHQLSRMPTAQVMVTNYAAQFYPTLYINGQRLQF 243

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VL D PC+  G  R+ P         D       Q  +L++ +   K GG V++S CS
Sbjct: 244 DKVLCDVPCTGDGAARKLPTRWVKWSARDGNVIHPLQLSILMRSLQLCKIGGYVMYSTCS 303

Query: 368 LDKQDSEEVVQKVLRSSP-IPVELVPLN 394
           L+  + E VV +V R +     ELV L+
Sbjct: 304 LNPIEDEAVVAEVFRRAGFDAFELVDLH 331


>gi|156937691|ref|YP_001435487.1| Fmu (Sun) domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566675|gb|ABU82080.1| Fmu (Sun) domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 385

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 34/236 (14%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269
             L  F +G+ + Q A A   V+         V+D+ AAPGGK            KV A 
Sbjct: 177 RELKSFEKGLIYPQSAPAVAAVRALEPEGL--VVDMNAAPGGKAFHAYELLRGKGKVIAF 234

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325
           D+SK+R+ K+   + RL    E +      +D          D V+VD PC++ G I + 
Sbjct: 235 DISKKRISKMMEEMRRLGHSFEVVRADSRYLDLDFPHLVGKADRVIVDPPCTAIGVIPKV 294

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
            DV   +  +D++ +  +Q++ +      +K GG++++S C+L K ++E VV+       
Sbjct: 295 WDV---KKDEDMINAFEYQKQFVKVAYKLLKKGGLMLYSTCTLTKTENERVVEFA---EE 348

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +  E+V  ++ + K+                     K+     G  GFF   L++ 
Sbjct: 349 MGFEVVEKDTPWGKTP-------------------VKVSPSVHGEPGFFIAILKKK 385


>gi|115445043|ref|NP_001046301.1| Os02g0217800 [Oryza sativa Japonica Group]
 gi|113535832|dbj|BAF08215.1| Os02g0217800 [Oryza sativa Japonica Group]
          Length = 501

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 159/449 (35%), Gaps = 67/449 (14%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF--VL 71
           +L  V+R   S           S     S R++    A+V  TL++LP +  VL    VL
Sbjct: 48  VLRRVLRGDASRRAA---GSIKSLVYSPSVRNKRATFALVCQTLKYLPILKEVLASTGVL 104

Query: 72  ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
            S   +++  +     V+   IL+  + A    V+  +   K    +   A L    +RR
Sbjct: 105 TSKWKKQEELVF----VTAYDILFGQETAASGSVEQLIMLHK----DTIMAALEKMCIRR 156

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
             R   +L+ +   +   P + +                           T++   ++  
Sbjct: 157 KVRSVEDLVSKKRTVKPKPRFLR-------------------------VNTLRTSTDSVI 191

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV-QDASASIPVQLFGTLNNLSVLDLC 249
            +LN +        + +L             +    +  ++ +            V+D C
Sbjct: 192 EELNKIHKVDKDELVPDLLVLPPGTDLHNHHLVSEGKGKASCMVAVALCPEPGWKVIDAC 251

Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306
           AAPG KT  L   +     +TA +++K R + L+  + R      + I  D  D      
Sbjct: 252 AAPGNKTVHLAALMNGEGSITACELNKERTKTLQNTIRRSGANNIETINGDFLDIDSNDP 311

Query: 307 F----DAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIV-------KSACFQRKLLLQGI 352
                 A+L+D  CS +G      D L    +R   D         K + FQRK L   +
Sbjct: 312 SYAEVRAILLDPSCSGSGISTERLDHLLPSHSRGNQDDASTSSRIRKLSAFQRKALSHAL 371

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
           SF      VV+S CS+ + ++E+VV  VL  +      +      W+   + +    E  
Sbjct: 372 SFPSVE-RVVYSTCSIHQAENEDVVSSVLPLASSLGFELATPFPQWRRRGLPVFEGSEHL 430

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +R  P           G++GFF     R 
Sbjct: 431 LRTDP---------EDGLEGFFISLFVRK 450


>gi|317401252|gb|EFV81894.1| ribosomal RNA small subunit methyltransferase [Achromobacter
           xylosoxidans C54]
          Length = 151

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 21/137 (15%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FDAVL D PC+++G +RRHPD+ W R  +D+ ++A  Q ++L      V PGG +++
Sbjct: 34  GRPFDAVLADVPCTASGIVRRHPDIRWLRRENDLRRTATLQTRILDALWQTVAPGGRLLY 93

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
             CS+   +      + L+  P    L                       ++ P  ++  
Sbjct: 94  VTCSVFPIEGTRQALEFLQRHPDARRLEAPG-------------------QLLPVAVDAT 134

Query: 424 DGVSSGMDGFFAVALRR 440
                  DGFF     +
Sbjct: 135 PAAQH--DGFFYALFAK 149


>gi|303247304|ref|ZP_07333577.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491218|gb|EFL51107.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
          Length = 429

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 102/259 (39%), Gaps = 14/259 (5%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +    H+           RL + P  + S      G   +QD S+ +P  L        V
Sbjct: 37  LAATGHRGAPEPFSPCCRRLADEPTPLGSSLAARFGYIHIQDRSSMLPPLLLDPPAGARV 96

Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDY 301
           LD+CAAPGGKT  L         V   + S  RL  LR  L R +L       + D   +
Sbjct: 97  LDMCAAPGGKTGFLAQLVGPTGFVLGNEPSPDRLATLRQTLLRENLANTATCAQTDLSPF 156

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P+  F  +L+D PCS  GT+ ++P        D +      QRKLL      + PGG +
Sbjct: 157 FPEGAFTHILLDPPCSGWGTLDKNPQAARIWSGDKVAPLIALQRKLLETAARLLVPGGRL 216

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           ++S C+ +  ++E+  +  L   P+    +     +         +S  G +R+      
Sbjct: 217 LYSTCTTNVVENEDQTRFALDHLPLAPLPLTPPEGFVFEAPHRDDVS--GVLRV------ 268

Query: 422 KIDGVSSGMDGFFAVALRR 440
             D  +S   GF+     +
Sbjct: 269 --DSRASAAQGFYMALYEK 285


>gi|146281225|ref|YP_001171378.1| transcription antitermination protein NusB [Pseudomonas stutzeri
           A1501]
 gi|166215709|sp|A4VHT5|NUSB_PSEU5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145569430|gb|ABP78536.1| NusB protein [Pseudomonas stutzeri A1501]
 gi|327479379|gb|AEA82689.1| transcription antitermination protein NusB [Pseudomonas stutzeri
           DSM 4166]
          Length = 161

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L        SL  +      D+ F  +   D      ++N   R    +D  
Sbjct: 26  ARSLAMQALYQWHMAGQSLNEIEAQFRVDNDFSGV---DGAYFHELLNGVARKKTEVDQA 82

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           +   L   L         +LR+S  +++  +DV    V++  +E AK         
Sbjct: 83  IAPNLDRPLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAKVYGATDGHK 138


>gi|327543217|gb|EGF29651.1| RNA methylase, NOL1/NOP2/sun family [Rhodopirellula baltica WH47]
          Length = 507

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 116/305 (38%), Gaps = 35/305 (11%)

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
            K+ +  ++ A        + V+ D         +       + +   P ++    GF  
Sbjct: 45  PKDELERLAAAMSQRHANVMRVRRDRTDAFRFSRSDAATPNPMDVPWYPLALAIPDGFHA 104

Query: 221 GV--------WWVQDASASIPVQLFGTLNN----LSVLDLCAAPGGKTA---QLIVSGAK 265
                     +++QDA + + +       +      V DLCAAPGGK     + I     
Sbjct: 105 SRSIDFAAGDFYLQDAGSLLALAAAEAHTDSLSGQLVCDLCAAPGGKATGLLEAIGDNGF 164

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323
           + A +  + R+  L  NL R       I   D      K    FD +L+DAPCS    + 
Sbjct: 165 LLANEPIRSRVAPLAYNLSRTGSDRYAISSEDPDALAEKLPGVFDTILIDAPCSGQALLS 224

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R        +   +  +A  Q+++L      ++PGG +V+S C+    ++E+ +  ++R 
Sbjct: 225 RGRQSKGAVNESMVATNAARQQRILAAAHKLLRPGGTIVYSTCTFAVAENEDQIDWMIRE 284

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR--- 440
               +E+ P  ++     D    L+  G+ R  P   E          G FA  L +   
Sbjct: 285 ----LEMQPFPASTLS--DYQSPLADCGY-RAWPHRDECA--------GAFAARLTKPII 329

Query: 441 LIQPK 445
           + +P+
Sbjct: 330 VGEPE 334


>gi|156546966|ref|XP_001599497.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 459

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 92/238 (38%), Gaps = 20/238 (8%)

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276
           +G   +Q+  + +  ++       +VLD+CAAPG KT  +   + +   V A++  K +L
Sbjct: 224 KGYVLLQNLPSILCSRVLDPQPGETVLDMCAAPGNKTTHIAALMENKGVVVAIEKIKNKL 283

Query: 277 EKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDAVLVDAPCSSTGTI 322
           E+L  N++            D+                   K+ FD VL+D PCS+ G  
Sbjct: 284 ERLNSNIENFSATIVKAYCFDSTKAVCDAEEKSIFDGPPYSKESFDRVLLDGPCSALG-- 341

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            + P +        +      QRKL    +  ++PGG +V+S C++   ++E ++   L+
Sbjct: 342 -QRPQIRNPISVSQLRSYVPLQRKLFTSAVQLLRPGGTLVYSTCTITIAENEGIIAWALK 400

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + P               ++    +        T    +      +   GFF     +
Sbjct: 401 TFPNLELRSVREKLMSMKMEKFATVGYTIDGLTTEQSDKLCRFDENDTVGFFIACFIK 458


>gi|225713816|gb|ACO12754.1| methyltransferase NSUN5 [Lepeophtheirus salmonis]
          Length = 431

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 144/395 (36%), Gaps = 30/395 (7%)

Query: 52  IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
           +V   +     I  +L          +    + L  + + ++++      A         
Sbjct: 52  LVTECVAKRDEITELLKK--SKLFEEEPRFNKNLASILITELIWGKGKLPATSRPLEIML 109

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
           KR K+ +  +K +       S++   +  R A ++     F + L++F   + +  +   
Sbjct: 110 KRQKQLKALSKEL-----CFSQKVKIVKPRWARVNTFKISFDDALKHFVEMDGLNYLEYD 164

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
             +     L     +E +        L    + +     +  S   +  G   +QD +++
Sbjct: 165 QDTKYQDFLEKVRLLEPYE---FMCDLHVDNLLVFHPKTAFYSHELYLNGSIILQDKAST 221

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHL 288
           +P+Q         V+D CAAPG KT Q+         V A++  + R++ L   L+R  +
Sbjct: 222 LPIQALNVKEGSIVMDACAAPGNKTTQIASCVGLNGGVYAIERDEERIQILDQTLERAGI 281

Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +     +  +D     P    D   +    S + +       +  R    + K + FQ K
Sbjct: 282 HKSLVKVCNIDFTTLNPDDSPDVEYIVLDPSCSSSGILSDVAIGNR----LSKLSAFQFK 337

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +L   + F      + +S CS+ K ++EEV++ +++  P       L    W +  +   
Sbjct: 338 MLEHALKFPNVS-KISYSTCSVHKIENEEVIEAIVKKHPHFKVQHVLKK--WPTRGLNEY 394

Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              + ++R            +    GFF   L+R+
Sbjct: 395 PHGDKFVR--------ATFETDLCSGFFVAILKRI 421


>gi|195108007|ref|XP_001998584.1| GI24054 [Drosophila mojavensis]
 gi|193915178|gb|EDW14045.1| GI24054 [Drosophila mojavensis]
          Length = 433

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 147/444 (33%), Gaps = 44/444 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF----LPRID 64
             ++ +L   + K+ S+  L+  E                VR++    L+        ID
Sbjct: 15  KATAKILKAAIEKQKSIKSLIFEEKH------------ARVRSL-QAVLKHYSDNRGAID 61

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             ++      L         L +V V ++++       +   +              + +
Sbjct: 62  NAIEE--TGLLKENPNLDSALAKVLVTELIFGR---GQLNGESKPVRTVRSYKEKLQQAI 116

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           +   ++        ++    +  + +         + ++++            I    + 
Sbjct: 117 SGSEQQKKEPNPRYVRINTNLLSVADALDYLYGEEWRRKQLDPDGTYADFLAAIRELEED 176

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           +     H    ++            E + +        + +Q+ +  +  +L       +
Sbjct: 177 EFLMDMHVEGVLIFHHKWSHYWASHEFVHA------KKFILQNKATCLAAELLAPPVGST 230

Query: 245 VLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLDLCAAPG K      ++ +  ++ A++ SK R + L    +         I  DA   
Sbjct: 231 VLDLCAAPGMKTLHICNVMHNKGRIYAVEQSKERYKALCDITNEAGCQIVTPILGDALTM 290

Query: 302 CPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
              K  D   +LVD  CS  G   R       +D   + K A  Q K+L   +S      
Sbjct: 291 DATKCPDVEYILVDPSCSGNGMQSRISVCDEQKDDKRLYKLAGLQIKILSHAMSAFPNVK 350

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIRIT 416
            +++  CSL K+++E+VVQ+ L+ +P    L     L + +    D       +  +   
Sbjct: 351 RILYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWQNVGDKEYVQIGKNCLYCL 410

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           PD            DG F     +
Sbjct: 411 PDY--------DLTDGIFLAMFEK 426


>gi|221480789|gb|EEE19218.1| PUA domain-containing, nucleolar protein, putative [Toxoplasma
           gondii GT1]
          Length = 613

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 33/251 (13%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
            + +LP         Q+  + +   +        VLD+CAAPGGKT  L   +     + 
Sbjct: 371 DLSTLPA----CLVAQNLPSIVVGHVLSPQPGERVLDMCAAPGGKTLHLATLMKGHGLIV 426

Query: 268 ALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDA--------------FDYCPKKLFDAVLV 312
           A++ SK R EKLR  L    H    +I+  D+                      FD VL 
Sbjct: 427 AVERSKTRAEKLRSFLSTSSHASIVEIVCGDSAKGTWQSTQLGMGSHGRDFIGYFDRVLA 486

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PC++ G   R            ++ +A +QR+ L  G   +K GG +V+S CS+ + +
Sbjct: 487 DVPCTALGL--RPRIDFEGLTDRVVLAAAKYQREFLKSGCQLLKTGGTLVYSTCSVSRAE 544

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP---DMLEKIDGVSSG 429
           +EE V   LR  P+ +E           +      + +   R+ P       +    S  
Sbjct: 545 NEENVAWALRHLPLMLE------PAEPFVGTHTFENGDRGARLFPPGEAEKLQRFCPSGN 598

Query: 430 MDGFFAVALRR 440
             GFF     +
Sbjct: 599 TIGFFIAKFLK 609


>gi|237845131|ref|XP_002371863.1| NOL1/NOP2/sun family protein [Toxoplasma gondii ME49]
 gi|211969527|gb|EEB04723.1| NOL1/NOP2/sun family protein [Toxoplasma gondii ME49]
 gi|221501454|gb|EEE27230.1| PUA domain-containing, nucleolar protein, putative [Toxoplasma
           gondii VEG]
          Length = 613

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 33/251 (13%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
            + +LP         Q+  + +   +        VLD+CAAPGGKT  L   +     + 
Sbjct: 371 DLSTLPA----CLVAQNLPSIVVGHVLSPQPGERVLDMCAAPGGKTLHLATLMKGHGLIV 426

Query: 268 ALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDA--------------FDYCPKKLFDAVLV 312
           A++ SK R EKLR  L    H    +I+  D+                      FD VL 
Sbjct: 427 AVERSKTRAEKLRSFLSTSSHASIVEIVCGDSAKGTWQSTQLGMGSHGRDFIGYFDRVLA 486

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PC++ G   R            ++ +A +QR+ L  G   +K GG +V+S CS+ + +
Sbjct: 487 DVPCTALGL--RPRIDFEGLTDRVVLAAAKYQREFLKSGCQLLKTGGTLVYSTCSVSRAE 544

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP---DMLEKIDGVSSG 429
           +EE V   LR  P+ +E           +      + +   R+ P       +    S  
Sbjct: 545 NEENVAWALRHLPLMLE------PAEPFVGTHTFENGDRGARLFPPGEAEKLQRFCPSGN 598

Query: 430 MDGFFAVALRR 440
             GFF     +
Sbjct: 599 TIGFFIAKFLK 609


>gi|124027288|ref|YP_001012608.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
 gi|123977982|gb|ABM80263.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
          Length = 423

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 152/447 (34%), Gaps = 44/447 (9%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            V + +L+ +  K  SL  +++               + L+ A+    LR    +   L 
Sbjct: 7   AVCARILARIEAKLYSLRYIVEKMKPRVP--------RGLLNALCLGVLRNYRLLIRALR 58

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           +       R        + ++  + ++      +V    +               +  + 
Sbjct: 59  YCGYRGDVRGNARGWLPIVIA-YEAMF---RHDSVPAEKLRSLGVLGGET--IDCLRGLE 112

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185
            +     +  L+R+A +  +P W  E L        +  +  +   P  I +        
Sbjct: 113 PKHVVSGLHGLERLAVLYSMPLWVVEELAKAEPPGGIEELLKSFQEPTPIWIRFNKRRLS 172

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESI-----VSLPGFAEGVWWVQDASASIPVQLFGTL 240
            E     L A+ +      + +    +      ++      +++VQD +A +   L G  
Sbjct: 173 REQAIKMLEAIGISVKPDPVLDDSLEVIRVEPGAIERLDNRLFYVQDRAAMLASHLLG-K 231

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTAL--DVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              +V D  +APG K A          A+  +VS+RRL   +  L R  +   D  E DA
Sbjct: 232 FEGAVYDFFSAPGNKLAHTYWRSGPTYAVALEVSRRRLHDEQRLLQRQAVLLVDAAEADA 291

Query: 299 FDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLW---TRDTDDIVKSACFQRKLLLQGISF 354
                +     A++VD  C+S G +   P+            + + A  Q   L   +  
Sbjct: 292 TRPPLRPGSGRAIIVDPDCTSMGRLGHSPETRLFLERAGRRIVERLAELQEAGLRAALRT 351

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
              G  VV+  C+L  +++EEVV+KV       VE         K +    +       R
Sbjct: 352 AARGAKVVYMTCTLTLRENEEVVRKV-------VEDGLAELVEAKPLIGVWSPFMRKTQR 404

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + P M +          G FA  L R+
Sbjct: 405 VYPHMSKCT--------GGFAALLIRV 423


>gi|47156972|gb|AAT12350.1| putative methyltransferase-like protein [Antonospora locustae]
          Length = 455

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 108/331 (32%), Gaps = 73/331 (22%)

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE-GVWWVQDASASIPVQLFGT 239
             + D + +   L   +  T          +  +LP   + G+ + Q+  +++P      
Sbjct: 17  MSEQDYQNFVESLERPLPRTFRSMGFCGEINTDNLPLLLDAGLVYAQEVVSALPCSFLQL 76

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
                VLD+CAAPG KT Q+      + A D S  R   L  NL +       +   DA 
Sbjct: 77  SPAHLVLDMCAAPGSKTTQMASQVRLLVANDSSASRCSVLISNLKKTPSTGVVVTGHDAR 136

Query: 300 DYC-------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
            +                  FD +L D PCSS GTIR++   L              Q +
Sbjct: 137 LFPMIRLAHTSFDSLGFPLYFDRILCDVPCSSDGTIRKNRKALDNW--HVNTMLFSLQYE 194

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--------- 397
           +L +    +K  G++V+S CSL   ++E VVQK    +    E+V  +  +         
Sbjct: 195 ILQRAGQLLKADGLIVYSTCSLSPIENEAVVQKFCAEN--SFEIVDCSRIFNIEVRSWSN 252

Query: 398 ----WKSIDMAMALSPEGWIRI------------------------------------TP 417
                       ++ PE   RI                                     P
Sbjct: 253 KCMSPNENRSGPSVLPENMYRITDDESVTAFCNRRVVFREGLTHWNPFVERTEHTADLFP 312

Query: 418 D------MLEKIDGVSSGMDGFFAVALRRLI 442
                     ++        GFF   LRR +
Sbjct: 313 QDCKALKHCLRVMPHDQDTGGFFITVLRRRV 343


>gi|225164363|ref|ZP_03726627.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
 gi|224801016|gb|EEG19348.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
          Length = 226

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 12/192 (6%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRL 276
             G  ++Q+ +    + L   +    +LD CAAPGGK       +   ++ ALD+  +  
Sbjct: 18  QSGDIFLQNPATRHAIDLLAPVAGELILDACAAPGGKSLAIADRMGRGRLVALDLPVQAR 77

Query: 277 EK----------LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326
           +                +R+             +      FDAVL+D PCS+TG +R   
Sbjct: 78  QLRLAENLSRAPAGVATERIQFNLLQPGSGAVLNKIAPHGFDAVLIDVPCSNTGVMRHRV 137

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           DV W     DI + A  Q +LL      V+PGG +V+S CSL+ +++E VVQ  L+    
Sbjct: 138 DVKWRLQQSDIAQHARQQFELLEAVARHVRPGGRLVYSTCSLEAEENEAVVQTFLKKCGN 197

Query: 387 PVELVPLNSAYW 398
              L        
Sbjct: 198 QFRLADSRQLRP 209


>gi|195388816|ref|XP_002053074.1| GJ23680 [Drosophila virilis]
 gi|194151160|gb|EDW66594.1| GJ23680 [Drosophila virilis]
          Length = 433

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 147/450 (32%), Gaps = 56/450 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF----LPRID 64
             ++ +L   + K+ S+  L+  E                VR++    L+        +D
Sbjct: 15  KATAKILKAAIEKQKSIKSLIFEEKH------------ARVRSL-QAVLKHYSDNRGAVD 61

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD------VADYAVVDLAVEQAKRDKENR 118
             ++      L         L +V V ++++              V L  E+ ++     
Sbjct: 62  NAIEE--TGLLKDNPNLDSALAKVLVTELIFGRGELNGESRPVQTVRLYKERLQQAISGA 119

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            + K   +         +  +          EW +++L         L          ++
Sbjct: 120 EYQKKEPNPRYVRINTNLLSIADALDYLYGEEWRRKQLAADATYADFLVAIRTLEEDEFL 179

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
                         +  V++               S        + +Q+ +  +  +L  
Sbjct: 180 ----------MDIHVEGVLIFHSKWSHYW-----ASHDYVRSKKFILQNKATCLAAELLA 224

Query: 239 TLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                +VLD+CAAPG KT     ++ +  ++ A++ SK R + L    +         I 
Sbjct: 225 PPVGSTVLDMCAAPGMKTLHLCNVMQNQGRIYAVEQSKERYKALCDITNEAGCQIVTPIL 284

Query: 296 MDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            DA      K  D   VLVD  CS  G   R       +D   + K A  Q K+L   +S
Sbjct: 285 GDALTMDSTKCPDVEYVLVDPSCSGNGMQSRISVCDEQKDDKRLYKLAGLQIKILSHAMS 344

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPE 410
                  +V+  CSL K+++E+VVQ+ L+ +P    L     L + +    D       +
Sbjct: 345 AFPNVKRIVYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWQNVGDKEYVKIGK 404

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +   PD            DG F     +
Sbjct: 405 NCLYCLPDH--------DLTDGIFLAMFEK 426


>gi|310792266|gb|EFQ27793.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001]
          Length = 866

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 19/185 (10%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVLV 312
            A D   +R   L   L RL      +   DA  Y                   FD +L 
Sbjct: 246 IANDADYKRGHMLVHQLKRLGSPNLLVTNHDATQYPSIKLPSDPATPNRPQYLKFDRILA 305

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  GT+R++ ++       + +     Q ++LL+ ++ +K GG VV+S CS++  +
Sbjct: 306 DVPCSGDGTLRKNMNLWKDWQPGNALGLHVTQVRILLRALAMLKVGGRVVYSTCSMNPVE 365

Query: 373 SEEVVQKVLRSS--PIPVELVPLNS---AYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           +E VV   +  +  P  VE+V  +S      ++  M      +   R+     E  +   
Sbjct: 366 NESVVAAAIDRAGGPDKVEIVDCSSELQGLVRAPGMRKWQIMDKSGRLWSSQAEVDEYTK 425

Query: 428 SGMDG 432
           S  DG
Sbjct: 426 SSTDG 430


>gi|258563306|ref|XP_002582398.1| hypothetical protein UREG_07171 [Uncinocarpus reesii 1704]
 gi|237907905|gb|EEP82306.1| hypothetical protein UREG_07171 [Uncinocarpus reesii 1704]
          Length = 861

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 57/234 (24%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL+     +   DA  Y   +                  FD 
Sbjct: 235 IANDSDYKRAHMLIHQMKRLNSPNLLVTNHDATLYPSIRLPGSPTAAGKRAPNRYLKFDR 294

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L++ +  +KPGG VV+S CS++
Sbjct: 295 ILADVPCSGDGTARKNVNVWKDWNPANGIGLFPTQNRILIRALQMLKPGGRVVYSTCSMN 354

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDM 403
             ++E VV   ++    P  V+++  ++                          WK ++ 
Sbjct: 355 PVENEAVVASAIKHCGGPEKVQIIDCSNELLGLVRSPGLTSWTVMDKQGRIWNAWKEVEE 414

Query: 404 AMALSPEGWIRITPDMLE--------------KIDGVSSGMDGFFAVALRRLIQ 443
            +    E   R+   M                ++        GFF   L +  +
Sbjct: 415 KINNGDETVKRVVEGMFPPPSDDQSIDLTRCMRVYPHQQDTGGFFITVLEKRSE 468


>gi|126465627|ref|YP_001040736.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1]
 gi|126014450|gb|ABN69828.1| Fmu (Sun) domain protein [Staphylothermus marinus F1]
          Length = 384

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 149/408 (36%), Gaps = 40/408 (9%)

Query: 45  DQILVRAI--VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ-QLLRVSVAQILYLDVADY 101
           D  L+ ++  V  +L     +D +L       LP K+  L+   + ++  +++       
Sbjct: 6   DYGLIASLRKVYGSL-TYSLLDKIL-------LPPKRLYLRVNTMLITREELVERLKKRG 57

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161
             V       +           +    +++  +K      + G ++       R + F  
Sbjct: 58  INVKEDPYVEEAVFIELEGPNKIPVYDKKIIVDKYAAESIMIGANLYRPGIV-RFDRFKE 116

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
            E V   +        +   V  D   +  K     +    I        I  L  +  G
Sbjct: 117 NEYVNIQATNGRIIAVVRTLVSSDKLKYMKK----GIVGENIVSIYKAPPIRDLEEYDLG 172

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEK 278
           +++ Q   A +  ++        + D+ AAPGGKT+ L+       ++ A + + ++  K
Sbjct: 173 LFYPQSLPAMMVSRILDPQPGELIFDMNAAPGGKTSHLVQLSQGRSRIIAFERNVKKALK 232

Query: 279 LRCNLDRLHL-YAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           +   L RL L     I+ MD+          +  D +L+D PC+  G     P +     
Sbjct: 233 VYSTLKRLRLLRNVIILPMDSRYVHLDLNVSEKVDKILIDPPCTGLGV---RPKIDIDIR 289

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            +DIV  + +QR+ L    + +   GI+V+S C+L  +++EE +   +R   + +E + L
Sbjct: 290 GEDIVVLSKYQRQFLNSASTILTRKGIIVYSTCTLTWEENEENIIYAVRK--LGLETIDL 347

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               +        +              +   +   M GFF   LRR 
Sbjct: 348 GKIPYADKIYYRDIVA-----------YRFSPLGYDMPGFFVAVLRRK 384


>gi|320167290|gb|EFW44189.1| tRNA and rRNA cytosine-C5-methylase [Capsaspora owczarzaki ATCC
           30864]
          Length = 546

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 75/454 (16%), Positives = 150/454 (33%), Gaps = 46/454 (10%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            N    ++ ++  +  KR SL  L                D+  + A++   L++   ++
Sbjct: 46  TNVYFAAASVIDRLRDKRGSLKSLAFACAFH---------DKKRLFALICEALKYRTVVE 96

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +L   +     + K     +  V+V  +L    +            KR          +
Sbjct: 97  ELLQ--VSGFTKKNKEIAPSVALVAVYDLLIGRGSI-----ECGGVIKRAVTE--SKGDL 147

Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID----- 179
           N+ L R+         R    + I E     +  +     +     A +  L        
Sbjct: 148 NAALVRMKIRAKVKDVRDLLPAAIREQDAIVIPRYVRVNTLKMSVAAAVQALQQQPGGFA 207

Query: 180 -LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +    DI   + +          + +            +  GV  +QD ++  P  +  
Sbjct: 208 LVDRPADISALSGRSFCQDEHLKDLLVFPSGTDFHDHKLYTSGVLILQDKASCFPAHVLS 267

Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                SV+D CAAPG KT+ +   +     V A D+  RR + ++  + +      + + 
Sbjct: 268 PSIGESVIDGCAAPGNKTSHVAALVGLKGHVHAFDLDPRRFKTMQNAMRKFGASNVECMN 327

Query: 296 MDAFDYCPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF---QRKLL 348
            +  +  P     A    +L+D  CS +G + R   +          +       Q + +
Sbjct: 328 GNFLEIKPTDPKYAKVSAILLDPSCSGSGIVNRLDYLAAEATETQEQRLTALSDFQFQTV 387

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
              ++F      V +S CS+ +Q++E VV +VL ++P    +  L    W    +     
Sbjct: 388 SHAMTFSNVS-KVSYSTCSIHEQENEGVVARVLAANPAFEVVHALP--QWPHRGLDTHPF 444

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               +R  P             +GFF    +R  
Sbjct: 445 GSKCVRAGP---------EDHTNGFFVSLFQRRT 469


>gi|228471232|ref|ZP_04056045.1| tRNA and rRNA cytosine-C5-methylase [Porphyromonas uenonis 60-3]
 gi|228307047|gb|EEK16129.1| tRNA and rRNA cytosine-C5-methylase [Porphyromonas uenonis 60-3]
          Length = 461

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 130/313 (41%), Gaps = 31/313 (9%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             + +P   K +L   Y  E    I +A  +P  + L +       AH    +   T   
Sbjct: 1   MQTPVPSELKAKLAQAYP-EHASRIVEALETPPSVSLRLNPARTLSAHPFAELEDGTIPW 59

Query: 204 ------RLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFGTLNNLSV----LDLCAAP 252
                           +L P +  G ++VQDASA     ++  L         LDLCAAP
Sbjct: 60  LPTELEGYWLSERPTFALDPLWHAGAYYVQDASAMTLATIWEQLGWHETPKLALDLCAAP 119

Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKL 306
           GGK      L+ +   + + ++  +R + L  N+ +     + II  +         +  
Sbjct: 120 GGKSTLLRDLLPAETLLVSNEILPKRCKILVENMVKWCGADQMIITQEEPQRLTPWLQGF 179

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            D +LVDAPCS  G +RR  +         +      QR +L + +  + P G+++++ C
Sbjct: 180 CDLILVDAPCSGEGLMRRDEEARRMWSPQLVADCVTRQRSILQEAMRMLAPEGVLLYATC 239

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +L++++++++VQ +L + P   EL+ L+    +   +A A +    + + P ++      
Sbjct: 240 TLNQEENDQMVQWLLDNYPC--ELIDLSHCAER---IAGACATSYGLHLWPGIVRGEGQ- 293

Query: 427 SSGMDGFFAVALR 439
                  +  ALR
Sbjct: 294 -------YLAALR 299


>gi|71031923|ref|XP_765603.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352560|gb|EAN33320.1| hypothetical protein, conserved [Theileria parva]
          Length = 667

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 137/410 (33%), Gaps = 82/410 (20%)

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
           +       R  E   F K   +  +  +  K +  +     S IP     RL        
Sbjct: 47  NQRENGRTRFVEGTLFNKEFETYYKDQNICKEDEWETFEEYSRIPLPVSFRLNTS-SYLW 105

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
            L            DL ++  ++     L   +      ++K    S+     FA+   +
Sbjct: 106 TLTREKLKQMCDTEDLHLEPCVDYCLEYLKNEVDYNIFYQMKTSKSSLRKNEKFAQFHQF 165

Query: 225 VQDA-----------SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----------- 262
           + +             + +PV       N ++LD CAAPG K  Q++             
Sbjct: 166 LMNEDNRGSLCRQETVSMLPVLFLDPRPNENILDFCAAPGMKYLQIVDMVETRLKSQNLD 225

Query: 263 ----GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-------FDAVL 311
                  +   DVS+ R+  L  +L  +   +  I   DA  +            FD +L
Sbjct: 226 SLKNKGIIVGNDVSQTRVSTLAHHLKTIDSPSTAITNYDATRFPNLYNKNGQLILFDKIL 285

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R+  D+  +    + +     Q  +L +GI  +KPGGI+++S CSL+  
Sbjct: 286 ADMPCSCDGTMRKSIDIWTSWKATNGLHLHKVQLTILKRGIELLKPGGILIYSTCSLNPL 345

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA----MALSPEGW--------------- 412
           ++E +      +S   VEL+ L        +      +  +P G                
Sbjct: 346 ENEAIASYC--ASLEDVELIDLEPIKGFKSEKGLLDWLVPNPNGGYFSDFSQVDDNMRER 403

Query: 413 -------------------IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                              +R+ P          +   GFF   +R++ +
Sbjct: 404 VKETMFKNSKWNEEMAKKVMRVLPHY--------NNTGGFFIFKIRKIPK 445


>gi|32476477|ref|NP_869471.1| Sun/nucleolar protein family protein- tRNA and rRNA
           cytosine-C5-methylase [Rhodopirellula baltica SH 1]
 gi|32447022|emb|CAD78928.1| Sun/nucleolar protein family protein-putative tRNA and rRNA
           cytosine-C5-methylase [Rhodopirellula baltica SH 1]
          Length = 507

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 109/297 (36%), Gaps = 32/297 (10%)

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
            K+    ++ A        + V+ D        ++       I +   P ++    GF  
Sbjct: 45  PKDEQERLAAAMSQRHANVMRVRRDRTDAFRFSHSDADSLNPIDVPWYPLALAIPDGFHA 104

Query: 221 GV--------WWVQDASASIPVQLFGTLNN----LSVLDLCAAPGGKTA---QLIVSGAK 265
                     +++QDA + + +       +      V DLCAAPGGK     + I     
Sbjct: 105 SRSIDFAAGDFYLQDAGSLLALAAAEAHTDSLSGQLVCDLCAAPGGKATGLLEAIGDDGF 164

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323
           + A +  + R+  L  NL R       I   D      K    FD +L+DAPCS    + 
Sbjct: 165 LLANEPIRSRVAPLAYNLSRTGSDRYAISSEDPDALAEKLPGVFDTILIDAPCSGQALLS 224

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           R        +   +  +A  Q+++L      ++PGG +V+S C+    ++E+ +  ++R 
Sbjct: 225 RGRQSKGAVNESMVATNAARQQRILAAAHKLLRPGGTIVYSTCTFAVAENEDQIDWMIR- 283

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                EL           D    L+  G+ R+ P   E          G FA  L +
Sbjct: 284 -----ELEMQPFPVSTLSDYQSPLADCGY-RVWPHRDECA--------GAFAARLTK 326


>gi|326494776|dbj|BAJ94507.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 509

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 27/249 (10%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
            +   P   +G   +Q  ++ +            V+D CAAPG KT  L   +     + 
Sbjct: 221 DMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSII 280

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIR 323
           A +++K R + L+  + +      + +  D  +            A+L+D  CS +G   
Sbjct: 281 ACELNKERAKTLQHTVRKSGANNIETVIGDFLNIDSNDPSYAEVRAILLDPSCSGSGIST 340

Query: 324 RHPDVLWTRDTDDIV----------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
              D L    + D            K + FQRK L   +SF      +V+S CS+ + ++
Sbjct: 341 ERLDHLLPSHSIDDQGDAGSSARIRKLSAFQRKALSHALSFPSVE-RLVYSTCSIHQAEN 399

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E+VV  VL  +      +      W+   + +    E  +R  P            ++GF
Sbjct: 400 EDVVSSVLPLASSLGFELSTPFPQWRRRGLPVFDGAEHLLRTDP---------EDDLEGF 450

Query: 434 FAVALRRLI 442
           F     R  
Sbjct: 451 FIALFVRKA 459


>gi|139948562|ref|NP_001077139.1| NOL1/NOP2/Sun domain family, member 6 [Bos taurus]
 gi|134024543|gb|AAI34425.1| NSUN6 protein [Bos taurus]
          Length = 408

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 23/197 (11%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPSYLFLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--------------MDAFDYCPKKLFDA 309
            +V ALD   +++EK++ N   L L +                    D       + FD 
Sbjct: 260 GEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  T    +++     QRKL    +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMACTWTLKEVMSYQPLQRKLFTVAVELLKPGGVLVYSTCTVT 376

Query: 370 KQDSEEVVQKVLRSSPI 386
             ++EE V   L + P 
Sbjct: 377 LAENEEQVAWALEAFPG 393


>gi|325119346|emb|CBZ54899.1| putative NOL1/NOP2/sun family protein [Neospora caninum Liverpool]
          Length = 631

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 31/255 (12%)

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262
            +    +  LP         Q+  + +   +        VLD+CAAPGGKT  L   +  
Sbjct: 384 MDRAVDLSRLP----PCLVAQNLPSIVVGHVLAPQPGERVLDMCAAPGGKTLHLATLMKG 439

Query: 263 GAKVTALDVSKRRLEKLRCNLDR-LHLYAEDIIEMDAFDYCPKKL--------------F 307
              + A++ SK R +KLR  L    H    +++  D+     +                F
Sbjct: 440 QGHIVAVERSKTRAQKLRSFLCSSPHASIVEVVCGDSAKGTWRSTHVGAEASPGRRLGNF 499

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D VL D PC++ G   R            ++ +A +QR+ L  G   +K GG +V+S CS
Sbjct: 500 DRVLADVPCTALGL--RPRLDFDGLTDRVVLSAAEYQREFLQSGCQLLKTGGTLVYSTCS 557

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVP--LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           + + ++EE V   L   P+ +E     +    ++S D    L P G          +   
Sbjct: 558 ISRAENEENVVWALGHLPLVLEPAEPFVGPHTFQSGDALAPLLPPGE-----AAKLQRFC 612

Query: 426 VSSGMDGFFAVALRR 440
            S    GFF    R+
Sbjct: 613 PSGNTIGFFIAKFRK 627


>gi|158442022|gb|ABW38756.1| Sun/nucleolar family protein [Giardia intestinalis]
          Length = 742

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 13/206 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G    Q+A + IP          +VLD+CAAPG KT Q    +     + A D   +
Sbjct: 157 HEAGFIVRQEAVSMIPPIFLQARAGEAVLDVCAAPGSKTLQLLEDVGPTGLLMANDADLK 216

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           R   L  N   + + +  I   DA  Y       LFD +L D PCS  GT+R+ PD+   
Sbjct: 217 RCYVLVHNTITVSMPSLVITNCDASRYPSLPGGMLFDKILADVPCSGDGTLRKAPDIWPR 276

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                 +     Q ++LL+ +  +K  G +V+S CSL+  ++E VV   L+     +E++
Sbjct: 277 WSPHGGLSLHPLQLRILLRSLQLLKVEGTLVYSTCSLNPIENEAVVASALQICQGSLEVL 336

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITP 417
             +      I           +   P
Sbjct: 337 DASHIAPSLIRSP-------GLTTWP 355


>gi|85105962|ref|XP_962072.1| hypothetical protein NCU05301 [Neurospora crassa OR74A]
 gi|28923666|gb|EAA32836.1| hypothetical protein NCU05301 [Neurospora crassa OR74A]
          Length = 855

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 79/242 (32%), Gaps = 61/242 (25%)

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVL 311
            + A D   +R   L   L RL      +   DA  Y                  FD +L
Sbjct: 239 MLIANDADYKRSHMLIHQLKRLSSPNMIVTNHDATMYPSLRIPNPEDPSKPNYLKFDRIL 298

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R++ ++         +     Q ++L++ +  +KPGG +V+S CS++  
Sbjct: 299 ADVPCSGDGTLRKNVNLWKDWAPAAALGLHLTQVRILVRALQMLKPGGRMVYSTCSMNPV 358

Query: 372 DSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT---------- 416
           ++E VV   +     P  +E+V          +   M      +   R+           
Sbjct: 359 ENESVVAAAIERCGGPDKIEIVDCADQLPLLQRKPGMRKWKIMDKSARVWNSWQEVEDHA 418

Query: 417 --------PDML---------------------EKIDGVSSGMDGFFAVALRR----LIQ 443
                   P  L                      ++        GFF   L++      +
Sbjct: 419 KSTEDGITPSRLVESMFPRPEGSICADLPLERCMRVYAHQQDTGGFFITVLQKKAEFKAK 478

Query: 444 PK 445
           P+
Sbjct: 479 PE 480


>gi|145590277|ref|YP_001152279.1| PUA domain-containing protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145282045|gb|ABP49627.1| PUA domain containing protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 377

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 28/231 (12%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271
           + +LP +AEG+++ Q   A     +       SV+DL AAPGGK   L   G  V A+D 
Sbjct: 167 LRNLPEYAEGLFYSQSLPAIAVGHIARKFAQRSVVDLNAAPGGKATHLAQYGIHVIAVDR 226

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
           S  ++ KL+  ++RL L + D++  D+       PK   D  LVD PC+  G     P +
Sbjct: 227 SSPKISKLKYEVERLGLNSVDVLLHDSRYLDRDFPKLKADVALVDPPCTDLGV---RPKI 283

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                       + +Q + L   +        V++S C+    ++EEV++K         
Sbjct: 284 YQKVTYSTAKTLSKYQVQFLKTALKL---ADYVIYSTCTTTAIENEEVIKK------SGA 334

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           E+V        SI        E   R  P +            GFF   L+
Sbjct: 335 EIVDPEI----SIGAPGWECAE-CRRFLPHI--------HNTPGFFIAVLK 372


>gi|158442008|gb|ABW38744.1| Sun/nucleolar family protein [Giardia intestinalis]
 gi|158442015|gb|ABW38750.1| Sun/nucleolar family protein [Giardia intestinalis]
 gi|158442029|gb|ABW38762.1| Sun/nucleolar family protein [Giardia intestinalis]
 gi|158442036|gb|ABW38768.1| Sun/nucleolar family protein [Giardia intestinalis]
 gi|158442043|gb|ABW38774.1| Sun/nucleolar family protein [Giardia intestinalis]
          Length = 742

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 13/206 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274
              G    Q+A + IP          +VLD+CAAPG KT Q    +     + A D   +
Sbjct: 157 HEAGFIVRQEAVSMIPPIFLQARAGEAVLDVCAAPGSKTLQLLEDVGPTGLLMANDADLK 216

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           R   L  N   + + +  I   DA  Y       LFD +L D PCS  GT+R+ PD+   
Sbjct: 217 RCYVLVHNTITVSMPSLVITNCDASRYPSLPGGMLFDKILADVPCSGDGTLRKAPDIWPR 276

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                 +     Q ++LL+ +  +K  G +V+S CSL+  ++E VV   L+     +E++
Sbjct: 277 WSPHGGLSLHPLQLRILLRSLQLLKVEGTLVYSTCSLNPIENEAVVASALQICQGSLEVL 336

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITP 417
             +      I           +   P
Sbjct: 337 DASHIAPSLIRSP-------GLTTWP 355


>gi|303244915|ref|ZP_07331241.1| RNA methylase, NOL1/NOP2/sun family [Methanothermococcus
           okinawensis IH1]
 gi|302484732|gb|EFL47670.1| RNA methylase, NOL1/NOP2/sun family [Methanothermococcus
           okinawensis IH1]
          Length = 277

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D                  ++K  P S+ + P +  G +++Q  S++IP  +     N  
Sbjct: 32  DRLKNKEVKLEDTFLDYMFKVKGAPFSMGATPEYLFGYYYLQSISSTIPALVLNPYENDV 91

Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           VLD+C+APGGKT  L   + +   + A +++++R+  L+ N+ R+ +    ++ MDA   
Sbjct: 92  VLDMCSAPGGKTTHLSQLMNNKGVIIANEINRKRMRSLKSNIYRMGIVNTILLNMDALRL 151

Query: 302 CPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD +L+DAPC+      ++  V       DI   A  Q+ +L  GI  +K GG 
Sbjct: 152 KKFNMLFDKILLDAPCTGNPIKDKNRVV----SKRDIRYCALRQKNMLNVGIDMLKEGGE 207

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDM 419
           +V+S CS + +++EEV++ +L +    VEL+ +         + +      G +++ P  
Sbjct: 208 IVYSTCSPEIEENEEVIEYILNTR-RDVELIDIGEFKDNLKGINVIDGELNGTLKVIPPD 266

Query: 420 LEKIDGVSSGMDGFFAVALRRL 441
                        FF   LR++
Sbjct: 267 EP-----------FFIAKLRKI 277


>gi|325090292|gb|EGC43602.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Ajellomyces capsulatus
           H88]
          Length = 853

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 60/239 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL+     I   DA  Y   K                  FD 
Sbjct: 287 IANDNDYKRAHLLIHQMKRLNSPNLIITNHDATMYPSIKLPSLPSPEGKPIRNRYLKFDR 346

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L + +  +K GG VV+S CS++
Sbjct: 347 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQYRILTRALQMLKVGGRVVYSTCSMN 406

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY---------------------WKSIDMAMA 406
             ++E V+  V+     P  V ++  ++                       W +      
Sbjct: 407 PVENEAVIASVIDRCGGPSKVHIMDCSNELSAMKRSPGLTTWTVMDKQGRIWANWKDVEE 466

Query: 407 LSPEGWIRI-------TP---------DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445
              EG + +        P             ++         FF   L +      +P+
Sbjct: 467 AVSEGDVTLNRIVEGMFPPAEEEGIDLSRCMRVYPHQQDTGAFFIAVLEKKSDIKARPE 525


>gi|289618216|emb|CBI54940.1| unnamed protein product [Sordaria macrospora]
          Length = 862

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 61/242 (25%)

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVL 311
            + A D   +R   L   L RL      +   DA  Y                  FD +L
Sbjct: 241 MLIANDADYKRSHMLIHQLKRLSSPNMIVTNHDATMYPSLRIPNPEDPTKPNYLKFDRIL 300

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R++ ++         +     Q ++L++ +  +KPGG +V+S CS++  
Sbjct: 301 ADVPCSGDGTLRKNVNLWKDWAPAAALGLHLTQVRILVRALQMLKPGGRMVYSTCSMNPV 360

Query: 372 DSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDMAM 405
           ++E VV   +     P  +E+V                              W+ I+   
Sbjct: 361 ENESVVAAAIERCGGPDKIEIVDCADQLPLLQRKPGMRKWQIMDKTGKVWNSWQEIEEHT 420

Query: 406 ALSPEG------------------WIRITPDMLEKIDGVSSGMDGFFAVALRR----LIQ 443
             + +G                     +  +   ++        GFF   L++      +
Sbjct: 421 KSTADGVAPARLVESMFPRPADSICADLPLERCMRVYAHQQDTGGFFITVLQKKAEFKAK 480

Query: 444 PK 445
           P+
Sbjct: 481 PE 482


>gi|213621077|ref|ZP_03373860.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 180

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 77/181 (42%), Gaps = 6/181 (3%)

Query: 38  FRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD 97
            + ++ +D+ L++ +    LR L +++ +++ ++   +  K+ ++  L+ V   Q+LY  
Sbjct: 1   QQKVADKDKALLQELCFGVLRTLSQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTR 60

Query: 98  VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKE 154
           V  +A +   VE A   K  +    L+N +LR+  R++  LL   A      + P W  +
Sbjct: 61  VPPHAALAETVEGAVSIKRPQ-LKGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVK 119

Query: 155 RLENFYGKERVLAIS-DACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
           RL+N Y  +    I  +    P+++ +       + W   L    +             +
Sbjct: 120 RLQNAYPTQWQRIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRL 179

Query: 213 V 213
            
Sbjct: 180 E 180


>gi|221113519|ref|XP_002168650.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 149

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRH 325
            A D    RL+ L  N+ RL +    +   D   +      FD VL+DAPCS TG I + 
Sbjct: 10  VANDAKAERLKSLIGNIHRLGITNTIVCNYDGRSFPKVMGGFDRVLLDAPCSGTGVISKD 69

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVL 381
             V   +   DI + +  Q++LLL  I  V    K GG +V+S CS+  +++E VV   L
Sbjct: 70  EQVKTNKSEKDIQRCSHVQKELLLAAIDSVDAKSKTGGYIVYSTCSIMVEENEWVVDYAL 129

Query: 382 RSSPIPVELVPLNSAYWKSI 401
                 V+LVP    + K  
Sbjct: 130 SRR--NVKLVPTGIDFGKEG 147


>gi|239905251|ref|YP_002951990.1| hypothetical protein DMR_06130 [Desulfovibrio magneticus RS-1]
 gi|239795115|dbj|BAH74104.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 423

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 100/273 (36%), Gaps = 21/273 (7%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASASI 232
           +    + +     L A                + + P           G   +QD S+ +
Sbjct: 21  VCEAGERDLVEAFLGATGHVAEAEPFSPWCRRVTAEPTALGASLAARFGYIHIQDRSSML 80

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           P  L        VLD+CAAPGGKT  L         V   + S  RL  LR  L R  L 
Sbjct: 81  PPLLLDPPAGARVLDMCAAPGGKTGFLAQLVGPTGFVLGNEPSPDRLATLRQTLFRESLA 140

Query: 290 AEDIIE-MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                   D     P   F  +L+D PCS  GT+ ++P        D +      QRKLL
Sbjct: 141 NTATCSFADLSPQLPAGSFTHILLDPPCSGWGTLDKNPQAAKIWAGDKVAPLVALQRKLL 200

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + + PGG V++S C+ +  ++E+  +  L   P  +  +PL +      +      
Sbjct: 201 ATAAALLAPGGRVLYSTCTTNVAENEDQTRFALDELP--LRQIPLAAPAGFVFEAPHRGD 258

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             G +R+        D  +S   GF+     ++
Sbjct: 259 VSGVLRV--------DSAASAAQGFYLALFEKV 283


>gi|322505328|emb|CBZ14768.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 634

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 100/271 (36%), Gaps = 52/271 (19%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-------GAKVTALDVSK 273
           G    Q+  + +P  L      + VLD+CAAPG KT+Q++            V A DV+ 
Sbjct: 130 GYLTRQETVSMLPPLLLQVEPGMRVLDMCAAPGSKTSQILEFLLSGDAERGVVVANDVNV 189

Query: 274 RRLEKLRCNLDRL-HLY-AEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDV 328
            RL+ L    +R    +    I   DA  +    P + FD VL D  CS  GT+R+  D+
Sbjct: 190 SRLDVLHHQTNRAAGAHLHVIITNADATRFPLLPPAERFDRVLCDVMCSGDGTLRKSIDM 249

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
               D          Q  +LL+G++  K GGIVV+S CSL+  + E VV   L  +    
Sbjct: 250 WPRWDALQGANLHHSQILVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTKGTF 309

Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420
           EL+                                       MA +     +  P M   
Sbjct: 310 ELMDPTPLLPGLCASPGMTSWTVTTRDLTTVLRTHEDAKTFMMAQTARRTFQYAPSMFAN 369

Query: 421 ------------EKIDGVSSGMDGFFAVALR 439
                        +I   +    GFF  ALR
Sbjct: 370 TELLVEQHIERTRRILPHAQDTGGFFVAALR 400


>gi|225560282|gb|EEH08564.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Ajellomyces capsulatus
           G186AR]
          Length = 865

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 60/239 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL+     I   DA  Y   K                  FD 
Sbjct: 237 IANDNDYKRAHLLIHQMKRLNSPNLIITNHDATMYPSIKLPSLPSPEGKPIRNRYLKFDR 296

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L + +  +K GG VV+S CS++
Sbjct: 297 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQYRILTRALQMLKVGGRVVYSTCSMN 356

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY---------------------WKSIDMAMA 406
             ++E V+  V+     P  V ++  ++                       W +      
Sbjct: 357 PVENEAVIASVIDRCGGPSKVHIMDCSNELSAMKRSPGLTTWTVMDKQGRIWANWKDVEE 416

Query: 407 LSPEGWIRI-------TP---------DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445
              EG + +        P             ++         FF   L +      +P+
Sbjct: 417 AVSEGDVTLNRIVEGMFPPAEEEGIDLSRCMRVYPHQQDTGAFFIAVLEKKSDIKARPE 475


>gi|296481451|gb|DAA23566.1| NOL1/NOP2/Sun domain family, member 6 [Bos taurus]
          Length = 408

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 23/197 (11%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPSYLFLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--------------MDAFDYCPKKLFDA 309
            +V ALD   +++EK++ N   L L +                    D       + FD 
Sbjct: 260 GEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++  T    +++     QRKL    +  +KPGG++V+S C++ 
Sbjct: 320 ILLDAPCSGMG---QRPNMACTWTLKEVMSYQPLQRKLFTVAVELLKPGGMLVYSTCTVT 376

Query: 370 KQDSEEVVQKVLRSSPI 386
             ++EE V   L + P 
Sbjct: 377 LAENEEQVAWALEAFPG 393


>gi|227872609|ref|ZP_03990944.1| possible tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
 gi|227841549|gb|EEJ51844.1| possible tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
          Length = 486

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 18/245 (7%)

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208
           P++  E+ +  +  E + +            L ++     +   L A         L+ +
Sbjct: 54  PDFPLEKWKENWKLEELKSE----------SLKLENSKNEYGLAL-AREYLCDEEYLQSI 102

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSG 263
              I        G++++QD SA   V           LDLCA+PGGK+ Q         G
Sbjct: 103 GVQIGHDAYHEAGLYYIQDPSAMSVVPYMEIRPFDRCLDLCASPGGKSLQIADRLKTEEG 162

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
             + + +    R + L  N++R+      +     +  +      F  +LVDAPCS  G 
Sbjct: 163 GILLSNEFIMERAKNLSKNVERMGYSHVAVSSCSAEELEAQFPAFFSRILVDAPCSGEGM 222

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
            R++ + +     + + + A  QR +L   +  ++ GGI+ +S C+  ++++E + + +L
Sbjct: 223 FRKNLEAIADWSLEKVSQCAGLQRDILGHALGMLREGGILAYSTCTFSEEENEGMREWIL 282

Query: 382 RSSPI 386
                
Sbjct: 283 EKHSE 287


>gi|311069033|ref|YP_003973956.1| transcription antitermination protein NusB [Bacillus atrophaeus
           1942]
 gi|310869550|gb|ADP33025.1| transcription antitermination protein NusB [Bacillus atrophaeus
           1942]
          Length = 131

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I+    ++    D                +V   +   
Sbjct: 1   MKRRT-AREKALQALFQIDVSDIAPNEAIEHALDDQKTD-------PFFEELVYGVIDHQ 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            ++D ++   L    L R     + +LR++V +++Y  D+     ++ A+E AKR   + 
Sbjct: 53  VQLDEMISKHLVNWKLDRIANVDRAVLRLAVYEMVYVEDIPVNVSMNEAIELAKRF-GDD 111

Query: 119 HFAKLVNSILRR 130
              K VN +L  
Sbjct: 112 KATKFVNGVLSN 123


>gi|324507264|gb|ADY43083.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Ascaris suum]
          Length = 524

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 73/225 (32%), Gaps = 59/225 (26%)

Query: 267 TALDVSKRRLEKLRCNL-DRLHLYAEDIIEMDAFDYC---------PKKLFDAVLVDAPC 316
            A DV   R   L      R+      +I  DA              + LFD +L D  C
Sbjct: 19  VANDVDNSRCYLLVRQALKRMPTSNCVVINEDAAFMPTFILNKDAPERVLFDRILCDVIC 78

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  GT R++P++  +      +     Q  +  + +  +   G++V+S CSL+  + E V
Sbjct: 79  SGDGTFRKNPEMWRSWSPQKAIGLHKLQANIARRCLQLLAVDGLMVYSTCSLNPIEDEAV 138

Query: 377 VQKVLRSSPIPVELVPLNSA---------------------------------------- 396
           + ++LR     +ELV ++                                          
Sbjct: 139 IAEMLRFGNGSIELVDVSDRLPQLKRSPGVSSWKVFDKDMTEYKSPDEVPEATKKSLVPS 198

Query: 397 -YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  + +       E   RI P M            GFF   LR+
Sbjct: 199 MFPPTDEEKQTFHLERCFRILPHMQ--------NTGGFFVAVLRK 235


>gi|256827223|ref|YP_003151182.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641]
 gi|256583366|gb|ACU94500.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641]
          Length = 500

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 51/445 (11%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75
             ++         +D     +AF           R + N  LR    I A          
Sbjct: 87  YEIIFLNKDAYVAVDQGVELAAFVQ------PRARRLANAVLRR---IMAARKSFPFGDP 137

Query: 76  PRKKYSLQQL----LRVS---VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                +L +L    L ++   +A++     +    +  + E A              +I 
Sbjct: 138 QTDDAALARLYGFPLWMAQMFIAEM--GRTSAEQFMAASNEPASVYFGVNALCTSDAAIE 195

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
              +REKI L      +    E   +R+ + +        S    +          D E+
Sbjct: 196 NAFTREKITLKPVTLPVVSAGESSAQRMPSTHRAPTTQTASSLHGAFAT-HKEFSGDTES 254

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL-D 247
            A  +                   V+   F +G   V DA+A     L       +   +
Sbjct: 255 SARTVTISGCFEAPHASTVTSH--VARRAFDQGQLLVSDAAAQAVALLALPDVAPTSFLE 312

Query: 248 LCAAPGGKT-------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           + +  G KT        +   +   +T +D  + ++       +R   +    +  D   
Sbjct: 313 VGSGRGTKTILLQSNAYRRFGTQMDLTCVDDHEFKMNVASSRAERYGAHISHPLVADGRT 372

Query: 301 YCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
             P +    F A LVDAPCS  GT+RRHP++ W     DI   A  +  L+      V P
Sbjct: 373 LSPARFNAGFAAALVDAPCSGLGTLRRHPEIRWRLAPRDIAALAELELDLITAAARLVVP 432

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            G + ++ C++   ++E V+++ L S +     +VP        +     L+  G     
Sbjct: 433 FGQLTYATCTVSAAENEGVIKRFLASDTGKQWRIVPTPVGGASKLFFKTTLTAGGC---- 488

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
                         D  FA  LRR+
Sbjct: 489 --------------DAHFACRLRRI 499



 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  +      ++   + LLD   G S    L+  D+   R +V   +  +  +D V
Sbjct: 7   ARRLAVEIGRDARERKAFASDLLDARLGKS---GLNAADRAFTRVLVLGVVATVGTLDEV 63

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA------KRDKENRHF 120
           +   L  +       L+  LRVS  +I++L+   Y  VD  VE A       R   N   
Sbjct: 64  IGRCLDRAGD-VGLQLRDALRVSTYEIIFLNKDAYVAVDQGVELAAFVQPRARRLANAVL 122

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
            +++ +       +       +A +   P W  +      G+        A   P  +
Sbjct: 123 RRIMAARKSFPFGDPQTDDAALARLYGFPLWMAQMFIAEMGRTSAEQFMAASNEPASV 180


>gi|303233259|ref|ZP_07319931.1| NOL1/NOP2/sun family protein [Atopobium vaginae PB189-T1-4]
 gi|302480649|gb|EFL43737.1| NOL1/NOP2/sun family protein [Atopobium vaginae PB189-T1-4]
          Length = 557

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 77/516 (14%), Positives = 146/516 (28%), Gaps = 82/516 (15%)

Query: 6   NARLVSSHLLSCVM------RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
            AR  +  LL             +    + D+         ++  D+     +   ++  
Sbjct: 38  PARRSAYALLVQYDPLTTTAASSLPARYIKDILRSSKRLADVTPADRAFAEFLCMGSVGA 97

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR------ 113
              +  VL           +  L  LL ++  ++LY++   YAV       A+       
Sbjct: 98  YRYLCDVLSGYCKR-FSHLEKKLHVLLILASFELLYMEHEHYAVCSQYAALARSIQPRYV 156

Query: 114 --------------------------------DKENRHFAKLVNS--ILRRVSREKIELL 139
                                            + +       +S            EL+
Sbjct: 157 GLVSGVLHALIREELPRMNKARDTLSAAYVSLQQGDAGADYACDSGVCDSDTITATDELV 216

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199
              A +S +P +    +    G+  +L  + +  + L I   V   +      ++   + 
Sbjct: 217 DAAARVSALPTFMLSAIAKARGRAFMLRYAASMRASLPIFYIVNPYLAPARQGVSKDDVC 276

Query: 200 TGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                 + L         +    +G     D +A +   +     +  VL++ A  G KT
Sbjct: 277 INEQFGMYLVCGAARGHIMRAVEQGSIVASDIAAQLICAVIAYTPHEHVLEIGAGNGTKT 336

Query: 257 AQLIVSGA-------KVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCPKKL 306
                               D+   +L  L+    +  +         +           
Sbjct: 337 LVSEYIAHVLKKPPLLHAVCDIVPAKLRTLQARFTKAAIPTTLEIVHADAALQAKPASTT 396

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWT-----RDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
           +D V +DAPCS   TIRRH D+         D D+       Q +LL +    V   G +
Sbjct: 397 YDCVFLDAPCSGISTIRRHSDIALRTTPASIDPDNSASLPAVQLQLLREASRQVTANGSL 456

Query: 362 VFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKS----------------IDMA 404
            +S CS+   + ++VV   L        E      AY +                  + +
Sbjct: 457 YYSTCSMLACEHDDVVAAFLASREGAGFERAAFPIAYLQLVRDTLEQVYIKAASVCPETS 516

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +S +  I    D    +     G D      L R
Sbjct: 517 RWISKDACITFPQDDTLLVQPYPYGPDAHMLTRLVR 552


>gi|299141412|ref|ZP_07034549.1| NOL1/NOP2/sun family protein [Prevotella oris C735]
 gi|298577372|gb|EFI49241.1| NOL1/NOP2/sun family protein [Prevotella oris C735]
          Length = 305

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSS 318
           + +G+ + + +  ++R   L  N+ +  +    +           K  FD +L D PCS 
Sbjct: 1   MPAGSLLFSNEPIRQRANILNENVLKFGVPDIIVTNNYARDYQQSKLQFDVILTDVPCSG 60

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G  R+    +       + + A  QR+++    S + PGG++++S C+ +  + EE V 
Sbjct: 61  EGMFRKDAGAIDDWSMKKVEECARLQREIVSDIWSCLNPGGLLIYSTCTFNAHEDEENVA 120

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            + +        +P   A+     M   +      R  P              G F   L
Sbjct: 121 WIAKELGADFIEIPTEKAW---NIMGSLIDKNPVYRFVPGKTRGE--------GLFMAVL 169

Query: 439 RRLIQP 444
           R+  +P
Sbjct: 170 RKYGEP 175


>gi|4544451|gb|AAD22359.1| unknown protein [Arabidopsis thaliana]
          Length = 837

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 31/213 (14%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271
              Q+A + +P        +  VLD+CAAPG KT QL+                V A DV
Sbjct: 167 ITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDV 226

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------------LFDAVL 311
             +R   L     R+      +   +   +   +                     FD VL
Sbjct: 227 DFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDRVL 286

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R+ PD+    ++         Q  L ++G+S +K GG +++S CS++  
Sbjct: 287 CDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPV 346

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           + E VV ++LR     VEL+ ++    + I   
Sbjct: 347 EDEAVVAEILRRCGDSVELLDVSDKLPELIRRP 379



 Score = 40.3 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 24/98 (24%)

Query: 356 KPGGIVV-------F---SNCSLDKQDSEEV--VQKVLRSSPIPVELVPLNSAYWKSIDM 403
           + GG++V       +   S  + +K ++ +V   +  L+ + I V          +  D+
Sbjct: 403 RRGGVLVSMFPSGKYLKDSTETTEKNENGDVNGCEDGLKETDISVVDATPEEQAEEVSDL 462

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +    E  +RI P               FF   L++ 
Sbjct: 463 PL----ERCMRIIPHDQ--------NTGAFFIAVLQKK 488


>gi|30681697|ref|NP_850024.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana]
 gi|20466586|gb|AAM20610.1| unknown protein [Arabidopsis thaliana]
 gi|330252205|gb|AEC07299.1| S-adenosylmethionine-dependent methyltransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 808

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 31/213 (14%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271
              Q+A + +P        +  VLD+CAAPG KT QL+                V A DV
Sbjct: 167 ITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDV 226

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------------LFDAVL 311
             +R   L     R+      +   +   +   +                     FD VL
Sbjct: 227 DFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDRVL 286

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R+ PD+    ++         Q  L ++G+S +K GG +++S CS++  
Sbjct: 287 CDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPV 346

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           + E VV ++LR     VEL+ ++    + I   
Sbjct: 347 EDEAVVAEILRRCGDSVELLDVSDKLPELIRRP 379



 Score = 40.3 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 24/98 (24%)

Query: 356 KPGGIVV-------F---SNCSLDKQDSEEV--VQKVLRSSPIPVELVPLNSAYWKSIDM 403
           + GG++V       +   S  + +K ++ +V   +  L+ + I V          +  D+
Sbjct: 403 RRGGVLVSMFPSGKYLKDSTETTEKNENGDVNGCEDGLKETDISVVDATPEEQAEEVSDL 462

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +    E  +RI P               FF   L++ 
Sbjct: 463 PL----ERCMRIIPHDQ--------NTGAFFIAVLQKK 488


>gi|302695663|ref|XP_003037510.1| hypothetical protein SCHCODRAFT_64939 [Schizophyllum commune H4-8]
 gi|300111207|gb|EFJ02608.1| hypothetical protein SCHCODRAFT_64939 [Schizophyllum commune H4-8]
          Length = 495

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 79/464 (17%), Positives = 146/464 (31%), Gaps = 69/464 (14%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  L  +  K+ S+  +L           L ++D+    A+V  TL++   +  V+   
Sbjct: 7   AAKTLDRLDSKQGSIKGVL---------ATLPEKDRKRTAALVIETLKYKAALADVIKAC 57

Query: 71  ----LISSLPRKKYS---LQQLLRVSVAQILYLDVADYAVV-DLAVEQAKRDKENRHFAK 122
                   +     +   +  LL      I   D      V         +  + +    
Sbjct: 58  GLLAAEKKITSLNLALVLVHDLLL--AKGIQAGDGPVKQAVLRHKTRLQGQWTKMKIKRG 115

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
             N+       ++   L           W  +           L  S + ++  +   + 
Sbjct: 116 AKNNEDLAQVGDQRAALIPRYARVNTNLWSVDEAVKS------LQASGSKLADPFASTSN 169

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
                     L           L    ++  +   +  G   +QD ++  P  +     +
Sbjct: 170 FTQDAHVPELL-----------LFSPKKAFHNDAAYKSGKLILQDKASCFPPLVLNPPAS 218

Query: 243 LS--VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
               V+D  AAPG KT  L   + +  K+ A +  KRR + L+  + +        +  D
Sbjct: 219 NKATVIDATAAPGNKTTYLSALMGNNGKLFAFERDKRRFQTLKTMVTKAACKNVLPVNAD 278

Query: 298 AFDYCPKKLFD----AVLVDAPCSSTGTIRRHPDVLWTRDTDDIV-----KSACFQRKLL 348
                P          +L+D  CS +G + R   +L T + +D       K A FQ  ++
Sbjct: 279 FLTIDPNDETYSGVTHILLDPSCSGSGIVNRLDYLLETEEENDSQDERLAKLASFQLMMI 338

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVELVPLNSAYWKSIDMAM 405
              + F      +V+S CS+   ++E VV++ L S         L   +S         M
Sbjct: 339 KHAMKFPSV-CRIVYSTCSIHAAENEHVVREALASDECRTGNFTLASRDSVLPTWPRRGM 397

Query: 406 AL-------SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                      EG IR  P             +GFF     R  
Sbjct: 398 REEMGECRADAEGLIRCLPG--------EDATNGFFVSCFVRRA 433


>gi|146308867|ref|YP_001189332.1| transcription antitermination protein NusB [Pseudomonas mendocina
           ymp]
 gi|145577068|gb|ABP86600.1| NusB antitermination factor [Pseudomonas mendocina ymp]
          Length = 159

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR ++   L         L  +      D+ F   S+ D      I++   R    
Sbjct: 20  ARREARTLAMQALYSWHIAGQPLNEIEAQFRVDNDF---SKVDGAYFHEILHGVPRQKTE 76

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D     +L   L         +LR+S  ++   +DV    V++  +E AK         
Sbjct: 77  LDEAFTPLLDRPLEEIDPVELAILRLSTYELKNRVDVPYKVVINEGIELAKVFGATDG-H 135

Query: 122 KLVNSILRR 130
           K VN IL +
Sbjct: 136 KFVNGILDK 144


>gi|29654709|ref|NP_820401.1| transcription antitermination protein NusB [Coxiella burnetii RSA
           493]
 gi|161829811|ref|YP_001597256.1| transcription antitermination protein NusB [Coxiella burnetii RSA
           331]
 gi|212212219|ref|YP_002303155.1| transcription antitermination protein NusB [Coxiella burnetii
           CbuG_Q212]
 gi|39931899|sp|Q83BT5|NUSB_COXBU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035886|sp|A9KBN6|NUSB_COXBN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035887|sp|A9N8T6|NUSB_COXBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055350|sp|B6IZ82|NUSB_COXB2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29541977|gb|AAO90915.1| N utilization substance protein B [Coxiella burnetii RSA 493]
 gi|161761678|gb|ABX77320.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           331]
 gi|212010629|gb|ACJ18010.1| N utilization substance protein B [Coxiella burnetii CbuG_Q212]
          Length = 138

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K+  NAR  +   L            L+     +     LS  D    + +V  T++ + 
Sbjct: 4   KTRHNARRYALQALYQWFFCETKPDALISQFMEEH---DLSDTDVAYFKEVVTGTIQHVA 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            ID ++   L   +         +LR+S+ ++L+  +V    V+D A+E  K        
Sbjct: 61  IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120

Query: 121 A 121
            
Sbjct: 121 K 121


>gi|150401879|ref|YP_001325645.1| NOL1/NOP2/sun family RNA methylase [Methanococcus aeolicus
           Nankai-3]
 gi|150014582|gb|ABR57033.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
           aeolicus Nankai-3]
          Length = 335

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 118/245 (48%), Gaps = 20/245 (8%)

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
              ++K     + + P +  G +++Q  S+ IP  +        VLD+C+APGGKT  L 
Sbjct: 106 YLFKIKNTKVPVGATPEYLFGYYYLQSISSVIPSLVLNPSEKDMVLDMCSAPGGKTTHLC 165

Query: 261 V---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
               +   V A +V+++R++ L+ N+ R+++    I+  DA        FD +L+DAPCS
Sbjct: 166 QLMNNKGIVVANEVNRKRIKSLKSNIFRMNITNTIILNSDALRLKYFNSFDKILLDAPCS 225

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
                 ++ +V       DI   +  Q+ ++  GI  +K GG +V+S CS + +++EEV+
Sbjct: 226 GNDIKDKNREV----SKRDIRYCSLRQKNMINIGIELLKTGGELVYSTCSAEIEENEEVI 281

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAV 436
           + +L      +EL+ +++       +++      G I++ P               FF  
Sbjct: 282 EYILSMRK-DIELINISNFKDTITGISVVDGEVNGTIKVIPPNEP-----------FFIA 329

Query: 437 ALRRL 441
            +R++
Sbjct: 330 KIRKI 334


>gi|63093894|dbj|BAD98175.1| hypothetical protein [Drosophila parabipectinata]
          Length = 433

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 154/448 (34%), Gaps = 52/448 (11%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ +L   + K+ S+  L+  E   +  R +    +                +D+ ++
Sbjct: 15  RATAKILKAAVEKQKSIKTLIFEE-KHARVRSMHAVLKAYSD--------NRGAVDSAIE 65

Query: 69  FV-LISSLPRKKYSLQQLLRVSVAQILYLDV-------ADYAVVDLAVEQAKRDKENRHF 120
              L+   P    SL ++L   V +++++             V+    +  +        
Sbjct: 66  TTGLLKDNPNLDPSLAKVL---VTELIFVRKKLNGESKPVQKVLSYEEKLKEAISGAGFE 122

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
            K  N    R++     L Q +  ++   +W ++ L         LA   A     ++  
Sbjct: 123 KKEPNPRYVRINTNLYSLSQALEYLAS-EDWRRKELPADASYADFLAAVKALEEDEFMT- 180

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
                      ++  V++               S     +  + +Q+    +  +L    
Sbjct: 181 ---------DLQVEGVLVFHHKWSSYW-----SSHEFVKQKKFILQNKGTCLAAELLAPP 226

Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
           +  +VLD+CAAPG KT      + +  ++ A++ S  R   L              I  D
Sbjct: 227 SGSTVLDMCAAPGMKTLHLCNFMKNKGRIYAVEQSTERYRVLCNITSEAGCDIVTPILGD 286

Query: 298 AFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
           A     +   +   +LVD  CS  G   R       +D   + K A  Q K+L   ++  
Sbjct: 287 ALRMNAENCPEVEYILVDPSCSGNGMQSRMNVCDEEKDDQRLFKLAGLQVKILSHAMTAF 346

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGW 412
                + +  CSL K+++EEVV++ L+ +P    L     L + +    D   A   +  
Sbjct: 347 PNVKRIAYCTCSLYKEENEEVVKRCLQVNPSFKLLSCKKALRNKWHNVGDTEYAKIGKNV 406

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   PD        S   DG F     +
Sbjct: 407 LYCLPD--------SDLTDGIFLALFEK 426


>gi|146304380|ref|YP_001191696.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702630|gb|ABP95772.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348]
          Length = 346

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 42/234 (17%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTAL 269
           +  L     G+   Q  ++    +L     +  ++D+ A PGGK   +      AK+   
Sbjct: 149 VAELDVVKRGLAISQGKASMYVAKLLDPRPDEIIVDMNAYPGGKLTHVYQLQPKAKIMGF 208

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHP 326
           D ++++++KLR  LD L +   D+   D+         +  D V++D PCS+ G     P
Sbjct: 209 DHTRKKIDKLRNILDTLKMK-MDVYVADSRYLYEDLGIRNVDKVMIDPPCSALGV---RP 264

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
            +   +  +DI   + +Q++ L      +KPGG V++S C+    ++EEV+      +  
Sbjct: 265 KIFDRKTKEDIQNFSSYQKQFLNSAYKILKPGGTVIYSTCTTTLAENEEVI------TDP 318

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             E+                   E  IR  P++          M GFF   L +
Sbjct: 319 RFEI-------------------EFMIRFHPNV--------HQMTGFFIAKLIK 345


>gi|255087632|ref|XP_002505739.1| predicted protein [Micromonas sp. RCC299]
 gi|226521009|gb|ACO66997.1| predicted protein [Micromonas sp. RCC299]
          Length = 398

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS------------GAKVTALDVSKRRLE 277
           + +P  + G   +  VLD+CA+PG KT Q I                 V A D++ RR  
Sbjct: 121 SMVPAAILGVEPHHFVLDMCASPGSKTTQCIEQLNANNTAAGSIPTGCVVANDINPRRAY 180

Query: 278 KLRCNLDRLHL----------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
            L      L            +A+           P+ ++D ++ D PCS  GT+R++P 
Sbjct: 181 FLVRRCAALGAATGSLMVTNHHAQWFPNPGDSGRYPEGVYDRIICDVPCSGDGTLRKNPQ 240

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +      +  +     Q ++  +G + +K GG +V+S CS +  ++E VV +++R     
Sbjct: 241 IWSEWRPEFAMGLHQLQLRIAQRGAALLKVGGYMVYSTCSFNPVENEAVVAELVRRCGGA 300

Query: 388 VELVPLNSA 396
           +E+V  +  
Sbjct: 301 LEIVDASDR 309


>gi|145357035|ref|XP_001422728.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582971|gb|ABP01045.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 555

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 99/295 (33%), Gaps = 82/295 (27%)

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVSKRRLEKL 279
           + +P  +     +  VLDLCA+PG KT Q             +   V A D++  R   L
Sbjct: 209 SMVPAAILQVEPHHRVLDLCASPGSKTTQALEALNVNGEEGSASGCVIANDINPMRCYFL 268

Query: 280 RCNLD--RLHLYAEDIIEMDAFDYC------------------PKKLFDAVLVDAPCSST 319
                  R       +    A  Y                   P+  +D ++ D PCS  
Sbjct: 269 VRRCAALRNATANLMVTTHQAQWYPNINVPTTDKALTERGGRYPEGSYDRIICDVPCSGD 328

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++P +      +  +     Q ++  +G + +  GG +V+S CS +  ++E VV +
Sbjct: 329 GTLRKNPQIWSEWRPEFAMGLHKLQLRIAQRGAALLNVGGYMVYSTCSFNPVENEAVVAE 388

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALS-------------------------PEGWIR 414
           +++     +E+V  +    + +      +                         P G  R
Sbjct: 389 LIKRCGGALEIVDASDRIPELLRRPGISTWNVMTMVEGNVVEYPKYEDSQASTVPIGLKR 448

Query: 415 -----ITP----------------------DMLEKIDGVSSGMDGFFAVALRRLI 442
                + P                          ++      M GFFAV L+++ 
Sbjct: 449 KFAKSMWPPAQSLARMGHLGKRIKSTAIPLQHCMRLVPHLQDMGGFFAVLLKKVA 503


>gi|326515656|dbj|BAK07074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 690

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 25/170 (14%)

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------------------ 306
            V A DV  +R   L     R+      +   +A ++    +                  
Sbjct: 32  MVVANDVDVQRCNLLIHQTKRMCTANLVVTNHEAQNFPGCSVAKFCPEACVDESKLQRLE 91

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L D PCS  GT+R+ PD+  T +          Q ++ ++GI+ +K GG +V+S C
Sbjct: 92  FDRILCDVPCSGDGTVRKAPDMWRTWNIGMGNGLHRLQVEIAMRGIALLKVGGRMVYSTC 151

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           S++  ++E VV ++LR     VEL+ +++   + I           +R  
Sbjct: 152 SMNPVENEAVVGEILRRCGDSVELLDVSNELPELIRRP-------GLRTW 194


>gi|297825119|ref|XP_002880442.1| hypothetical protein ARALYDRAFT_320078 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326281|gb|EFH56701.1| hypothetical protein ARALYDRAFT_320078 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 838

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271
              Q+A + +P       ++  VLD+CAAPG KT QL+                V A DV
Sbjct: 167 ITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDV 226

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------------LFDAVL 311
             +R   L     R+      +   +   +   +                     FD VL
Sbjct: 227 DFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDRVL 286

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R+ PD+    ++         Q  L ++G+S +K GG +++S CS++  
Sbjct: 287 CDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPV 346

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           + E VV ++LR     VEL+ ++    + I   
Sbjct: 347 EDEAVVAEILRRCGDSVELLDVSDKLPELIRRP 379



 Score = 40.3 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 29/129 (22%)

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF----------SNCSLDKQDSE 374
               L      D        + +        + GG++V           S  +  K ++ 
Sbjct: 377 RRPGLKKWKVRDKGGWITSYKDVPQN-----RRGGVLVSMFPSGKNLKDSTETTQKNENG 431

Query: 375 EV--VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +V   +  L+ + +PV     +    +  D+ +    E  +RI P               
Sbjct: 432 DVNGCEDGLKEADVPVVDATPDEQAEEVSDLPL----ERCMRIMPHDQ--------NTGA 479

Query: 433 FFAVALRRL 441
           FF   L+++
Sbjct: 480 FFIAVLQKI 488


>gi|308811442|ref|XP_003083029.1| proliferating-cell nucleolar protein-like (ISS) [Ostreococcus
           tauri]
 gi|116054907|emb|CAL56984.1| proliferating-cell nucleolar protein-like (ISS) [Ostreococcus
           tauri]
          Length = 681

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR-----------LEK 278
           + +P  +    ++  VLD+CA+PG KT Q + +     A+D  + R           L  
Sbjct: 198 SMVPAAILQVQSHHRVLDMCASPGSKTTQALEALNMD-AVDGIEERRCAALGNATANLMV 256

Query: 279 LRCNLDRLHLYAEDIIEM---DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
                         +      ++    P+  +D ++ D PCS  GT+R++P +      +
Sbjct: 257 TTHQAQWYPNVNVPLETEAPVESGGRYPEGSYDRIICDVPCSGDGTLRKNPQIWSEWRPE 316

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
             +     Q ++  +G + +K GG +V+S CS +  ++E VV ++++     +E+V  + 
Sbjct: 317 FAMGLHKLQLRIAQRGAALLKVGGYMVYSTCSFNPVENEAVVAELIKRCGGALEIVDASD 376

Query: 396 AYWKSIDMA 404
              + +   
Sbjct: 377 RVPELLRRP 385


>gi|49080752|gb|AAT50054.1| PA4052 [synthetic construct]
          Length = 160

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L         L  +      D+ F   S+ D      I++   R   
Sbjct: 19  AARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDF---SEVDGAYFHEILHGVPRQKS 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D+  +  L   L         +LR+S  ++   +DV    V++  +E AK        
Sbjct: 76  ELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDG- 134

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 135 HKFVNGVLDK 144


>gi|152985013|ref|YP_001346435.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PA7]
 gi|150960171|gb|ABR82196.1| transcription antitermination factor NusB [Pseudomonas aeruginosa
           PA7]
          Length = 159

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L         L  +      D+ F   S+ D      I++   R   
Sbjct: 19  AARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDF---SEVDGAYFHEILHGVPRQKS 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D+  +  L   L         +LR+S  ++   +DV    V++  +E AK        
Sbjct: 76  ELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDG- 134

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 135 HKFVNGVLDK 144


>gi|254236941|ref|ZP_04930264.1| NusB protein [Pseudomonas aeruginosa C3719]
 gi|126168872|gb|EAZ54383.1| NusB protein [Pseudomonas aeruginosa C3719]
          Length = 159

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L         L  +      D+ F   S+ D      I++   R   
Sbjct: 19  AARRKARSLAVQALYSWQIAGQPLHEIEAQFRADNDF---SEVDGAYFHEILHGVPRQKS 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D+  +  L   L         +LR+S  ++   +DV    V++  +E AK        
Sbjct: 76  ELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDG- 134

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 135 HKFVNGVLDK 144


>gi|156061725|ref|XP_001596785.1| hypothetical protein SS1G_03008 [Sclerotinia sclerotiorum 1980]
 gi|154700409|gb|EDO00148.1| hypothetical protein SS1G_03008 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 926

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 79/240 (32%), Gaps = 61/240 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------LFDAVLV 312
            A D   +R   L   L RL      +   DA  Y   K               FD +L 
Sbjct: 232 IANDADYKRSHMLIHQLKRLSSPNLIVTNHDATMYPSIKLPPTPENPATNRYLKFDRILA 291

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  GT R++ ++    +  + +     Q ++L++ +  +K GG VV+S CS++  +
Sbjct: 292 DVPCSGDGTTRKNVNLWKDWNPGNALGLYITQVRILVRALQMLKVGGRVVYSTCSMNPIE 351

Query: 373 SEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT----------- 416
           +E VV   +     P  V+LV  +       +   +      +   R+            
Sbjct: 352 NEAVVASAIERCGGPEKVKLVSSDDQLPLLKRRPGLKTWTVMDKKGRVWNSWAELQKYIA 411

Query: 417 ----------------P-----------DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445
                           P           D   ++        GFF   L +      +P+
Sbjct: 412 ENGQDDWTGRLVEGMFPPTDEAMSSVPLDQCMRVYAHLQDTGGFFITILEKQSEFKAKPE 471


>gi|18312148|ref|NP_558815.1| RNA binding protein [Pyrobaculum aerophilum str. IM2]
 gi|18159582|gb|AAL62997.1| RNA binding protein (fmu, PCNA P120 homolog), probable [Pyrobaculum
           aerophilum str. IM2]
          Length = 379

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 29/232 (12%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271
           + +LP +AEG+++ Q   A +   +   +     +DL +APGGKT  L   G +V A+D 
Sbjct: 167 LRNLPEYAEGLFYSQSLPAILVGHIARRITQTDAVDLNSAPGGKTTHLAQMGIRVIAVDR 226

Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           S +++EKLR    RL L    DI+  D+       PK      LVD PC+  G     P 
Sbjct: 227 SAQKIEKLRSEAARLGLDVFIDILLHDSRYLDRDFPKIKAGVALVDPPCTDIGV---RPK 283

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +      +     A +Q + L      +K    V++S C+L   ++E V++K        
Sbjct: 284 IYHKVTFEAAKTLARYQIQFLKTA---LKIAPYVIYSTCTLTYIENEGVIEKA------G 334

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            E+V            A         R  P +            GFF   LR
Sbjct: 335 AEIVDAGIEIG-----APGWGCRECRRFLPHV--------HNTPGFFIAVLR 373


>gi|322488528|emb|CBZ23774.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 634

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 97/271 (35%), Gaps = 52/271 (19%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-------IVSGAKVTALDVSK 273
           G    Q+  + +P  L      + VLD+CAAPG KT+Q+             V A DV  
Sbjct: 130 GYLTRQETVSMLPPLLLQVEPGMRVLDMCAAPGSKTSQILELLLTGEPERGVVVANDVKA 189

Query: 274 RRLEKLRCNLDRLHLYAED--IIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDV 328
            RL+ L    +R         I   DA  +      + FD VL D  CS  GT+R+  D+
Sbjct: 190 SRLDVLHHQTNRAAGANLHLIITNTDATRFPLLPLAERFDRVLCDVMCSGDGTLRKSIDM 249

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
               D+         Q ++LL+G++  K GGIVV+S CSL+  + E VV   L  +    
Sbjct: 250 WPRWDSLQGANLHHTQMRVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTKGTF 309

Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420
           EL+                                        A +     +  P M   
Sbjct: 310 ELMDPTPLLHGLCASPGMTSWTVTTRDLTTTLHNYEDAKAFMEAQTDRRTFQYAPSMFAN 369

Query: 421 ------------EKIDGVSSGMDGFFAVALR 439
                        +I   +    GFF  ALR
Sbjct: 370 TELLVEQHIERTRRILPHTQDTGGFFVAALR 400


>gi|120598061|ref|YP_962635.1| transcription antitermination protein NusB [Shewanella sp. W3-18-1]
 gi|166215720|sp|A1RHD6|NUSB_SHESW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120558154|gb|ABM24081.1| NusB antitermination factor [Shewanella sp. W3-18-1]
          Length = 134

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + L   D    R + +    
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QSLDGVDVAYFRELFSGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
             P++D ++   L   +       + ++R++  ++ +  DV     ++ A+E AK    +
Sbjct: 58  KKPQLDELIIPHLERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGAD 117

Query: 118 RHFA 121
               
Sbjct: 118 ESHK 121


>gi|119513323|ref|ZP_01632361.1| Fmu (Sun) [Nodularia spumigena CCY9414]
 gi|119462030|gb|EAW43029.1| Fmu (Sun) [Nodularia spumigena CCY9414]
          Length = 326

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 92/274 (33%), Gaps = 13/274 (4%)

Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--PES 211
            RL     K+     S     P    +    +          +        +  L   E 
Sbjct: 13  RRLFENPDKQEKFIDSLINPQPFNPAILWCQNKPDILPFPVELPTNWQPDFVDRLLLGEK 72

Query: 212 IVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVT 267
               P   +G ++  D S+     +          V D+CA+PGGK+           + 
Sbjct: 73  PGKHPLHQQGYFYCLDFSSVFAASVLLTIPQPVGLVFDMCASPGGKSVFAWKALQPDLLI 132

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325
           + +V  +RL  L  NL R  +    ++  D+  +        D V+VDAPC+    + + 
Sbjct: 133 SNEVIGKRLGMLISNLKRCDISPCTVVNRDSSIFAENMPLCSDLVMVDAPCTGQSLLAKG 192

Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
                      I +SA  Q++++      V P G +V+  C+   +++E+V +  L   P
Sbjct: 193 EKAPGCFHPTAINRSANRQKRIIANSAQLVAPQGYLVYMTCTYSAEENEQVCEWFLSKFP 252

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
                           +    LS     RI P  
Sbjct: 253 QF-----QAVRVSYLDEYQSHLSNIFCYRIFPQD 281


>gi|327294253|ref|XP_003231822.1| methyltransferase [Trichophyton rubrum CBS 118892]
 gi|326465767|gb|EGD91220.1| methyltransferase [Trichophyton rubrum CBS 118892]
          Length = 852

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 56/231 (24%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310
            A D   +R   L   + RL+     +   DA  Y   K                 FD +
Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGQPAKNRYLKFDRI 299

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT R++ ++    +  + +     Q ++L + +  +K GG VV+S CS++ 
Sbjct: 300 LADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359

Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMA-----------------MALSPEG 411
            ++E V+  V+        VE+V   +   +                       A + E 
Sbjct: 360 IENEAVISHVIDRCGGSSKVEIVDCENQLPELKRRPGLTTWKIMDKTGRIYENWAEAEEE 419

Query: 412 WIRITP---------------------DMLEKIDGVSSGMDGFFAVALRRL 441
             ++ P                         ++        GFF   L + 
Sbjct: 420 VRKLNPAASRLVEGMFPPLGDADVGDLTRCMRVYPHMQDTGGFFITVLEKK 470


>gi|322500913|emb|CBZ35990.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 634

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 96/271 (35%), Gaps = 52/271 (19%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------LIVSGAKVTALDVSK 273
           G    Q+  + +P  L      + VLD+CAAPG KT+Q              V A DV  
Sbjct: 130 GYLTRQETVSMLPPLLLQVGPGMRVLDMCAAPGSKTSQLLELLLTGESERGVVVANDVKA 189

Query: 274 RRLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
            RL+ L    +R      HL   +          P + FD VL D  CS  GT+R+  D+
Sbjct: 190 SRLDVLHHQTNRAAGAHLHLIITNTDATRFPLLPPAERFDRVLCDVMCSGDGTLRKSIDM 249

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
               D+         Q ++LL+G++  K GGIVV+S CSL+  + E VV   L  +    
Sbjct: 250 WPRWDSLQGANLHHTQMRVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTKGTF 309

Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420
           EL+                                        A +     +  P M   
Sbjct: 310 ELIDPTPLLHGLCASPGMTSWTITTRDLTTALHNYEDAKAFMEAQTDRRTFQYAPSMFAN 369

Query: 421 ------------EKIDGVSSGMDGFFAVALR 439
                        +I   +    GFF  ALR
Sbjct: 370 TELLVDQHIERTRRILPHTQDTGGFFVAALR 400


>gi|308505330|ref|XP_003114848.1| hypothetical protein CRE_28431 [Caenorhabditis remanei]
 gi|308259030|gb|EFP02983.1| hypothetical protein CRE_28431 [Caenorhabditis remanei]
          Length = 398

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 107/263 (40%), Gaps = 19/263 (7%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
           +E+L +         I +A  + + +  ++ +  E +   ++   + +  I  +     +
Sbjct: 84  REQLIHEMESRFFGKIMEAGDTAVCVPKSLPWYKEAYQTPMSRTAVRSHPILAQLHNFLV 143

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGA 264
                   G    Q+A + IP  L    +   VLDLCAAPG KT Q              
Sbjct: 144 TEAEL---GNLSRQEAVSMIPPLLLAPTSEHYVLDLCAAPGSKTTQLLEMIHENDENPKG 200

Query: 265 KVTALDVSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPKK-------LFDAVLVDAPC 316
            V A DV  +R    +   L R    A  +   DA  +            FD VL D  C
Sbjct: 201 MVIANDVDMKRCYMLIHHTLKRFRTAACAVTCEDAARFPQISDSDGGLIQFDRVLADVIC 260

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  GT+R++P++       D +     Q  +  +G   +K GG +V+S CS++  + E V
Sbjct: 261 SGDGTLRKNPEIWKKWTPQDGLGLHRMQIAIARKGAQQLKVGGRMVYSTCSMNPIEDEAV 320

Query: 377 VQKVLRSSPIPVELVPLNSAYWK 399
           V ++LR +   ++LV  +    +
Sbjct: 321 VAQLLRDAKGSLKLVDTSKLLPE 343


>gi|121701151|ref|XP_001268840.1| methyltransferase (Ncl1), putative [Aspergillus clavatus NRRL 1]
 gi|119396983|gb|EAW07414.1| methyltransferase (Ncl1), putative [Aspergillus clavatus NRRL 1]
          Length = 891

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL      +   DA  Y   +                  FD 
Sbjct: 224 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPRLDAEGKVHKNRYLKFDR 283

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PC+  GT R++  V       + +     Q ++L++ +  +K GG VV+S CS++
Sbjct: 284 ILADVPCTGDGTARKNISVWREWGPANALGLYATQVRILVRALQMLKVGGRVVYSTCSMN 343

Query: 370 KQDSEEVVQKVLRSSPIP--VELVP----------------------------------- 392
             ++E VV   +        VE++                                    
Sbjct: 344 PVENEAVVASAIARCGGAANVEILDCSKELPGLKRAAGVRSWKVMDREGRMYNNWKEVEE 403

Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +    +        L  +  IRI P + +          GFF   L +
Sbjct: 404 QREREGINGLGRIAEGMFPPTGENADLPLDRCIRIYPHLQD--------TGGFFITVLEK 455

Query: 441 L----IQPK 445
                 +P+
Sbjct: 456 KSEIRAKPE 464


>gi|15599247|ref|NP_252741.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PAO1]
 gi|107103566|ref|ZP_01367484.1| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2]
 gi|116052089|ref|YP_789067.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889667|ref|YP_002438531.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           LESB58]
 gi|254242734|ref|ZP_04936056.1| NusB protein [Pseudomonas aeruginosa 2192]
 gi|296387391|ref|ZP_06876890.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
           PAb1]
 gi|313109495|ref|ZP_07795451.1| NusB protein [Pseudomonas aeruginosa 39016]
 gi|22095967|sp|Q9HWX6|NUSB_PSEAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9950248|gb|AAG07439.1|AE004821_12 NusB protein [Pseudomonas aeruginosa PAO1]
 gi|115587310|gb|ABJ13325.1| NusB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196112|gb|EAZ60175.1| NusB protein [Pseudomonas aeruginosa 2192]
 gi|218769890|emb|CAW25651.1| NusB protein [Pseudomonas aeruginosa LESB58]
 gi|310881953|gb|EFQ40547.1| NusB protein [Pseudomonas aeruginosa 39016]
          Length = 159

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L         L  +      D+ F   S+ D      I++   R   
Sbjct: 19  AARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDF---SEVDGAYFHEILHGVPRQKS 75

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D+  +  L   L         +LR+S  ++   +DV    V++  +E AK        
Sbjct: 76  ELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDG- 134

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 135 HKFVNGVLDK 144


>gi|313886856|ref|ZP_07820560.1| NOL1/NOP2/sun family protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923653|gb|EFR34458.1| NOL1/NOP2/sun family protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 461

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 129/313 (41%), Gaps = 31/313 (9%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-----TWAHKLNAVML 198
             + +P   + +L+  Y  E    I +A  +   + L +              +  A+  
Sbjct: 1   MQTPVPSELRAKLQLDYP-EHATRIVEALETLPTVSLRLNPARTLTTLPHAELRDGAIPW 59

Query: 199 PTGGIRLKELPESIV--SLPGFAEGVWWVQDASASIPVQLFGTLNNLSV----LDLCAAP 252
               +    L E       P +  G ++VQDASA     ++  L   +     LDLCAAP
Sbjct: 60  LPAELEGYWLSERPTFALDPLWHAGAYYVQDASAMTLATIWERLGWHTAPRLALDLCAAP 119

Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCN-LDRLHLYAEDIIEMDAFDYCP--KKL 306
           GGK      L+     + + ++  +R + L  N +         I + D     P  +  
Sbjct: 120 GGKSTLLRDLLPEETLLVSNEILPKRCKILVENLVKWCGADQMIITQEDPQQLTPLLRGA 179

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            D +LVDAPCS  G +RR  +         +      QR +L + +  + P GI++++ C
Sbjct: 180 CDLILVDAPCSGEGLMRRDEEARRMWSPQLVSDCVTRQRAILQEAMRMLAPEGILLYATC 239

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +L++++++++VQ +L   P   EL+ L+ +  +   +A A +    + + P ++      
Sbjct: 240 TLNQEENDQMVQWLLDHYPC--ELIDLSRSAER---IAGAYATSYGLHLWPGIVRGEGQ- 293

Query: 427 SSGMDGFFAVALR 439
                  +  ALR
Sbjct: 294 -------YLAALR 299


>gi|312113512|ref|YP_004011108.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100]
 gi|311218641|gb|ADP70009.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100]
          Length = 185

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEY--GDSAFRLLSQRDQILVRAIVNVTLRF 59
           +    ARL +   L  +   +  L+ +L            + +  D+   R IV    R 
Sbjct: 19  QPRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETVEIYAGADRSFFRDIVEGIARG 78

Query: 60  LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKE 116
             +ID  +   L     L R    L+ +LR  V ++    DV   AV++  VE AK    
Sbjct: 79  QAKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAVINEYVEIAKDFFG 138

Query: 117 NRHFAKLVNSILRR 130
                 +VN +L R
Sbjct: 139 GEE-PGVVNGVLDR 151


>gi|226484588|emb|CAX74203.1| Putative methyltransferase C17D4.04 [Schistosoma japonicum]
          Length = 605

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 105/312 (33%), Gaps = 92/312 (29%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------------------L 259
              Q+A + +P  L    ++ ++LDLCAAPG K+AQ                        
Sbjct: 4   ISRQEAVSMLPPLLLDIRSHHTILDLCAAPGSKSAQLVELLHSDAEAILSKSDSESAPKY 63

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---------------- 303
           I     V A DV +RR   +   + RL      I + DA  +                  
Sbjct: 64  IEPTGMVIANDVDQRRCYMMVHQVKRLQSPCVVITQEDASCFPRLYLTLSSDEMTGQRDL 123

Query: 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGG-- 359
            + +FD VL D PCS  GT+R++PD+      +  +     Q ++L +G+  ++ P G  
Sbjct: 124 RQLVFDRVLADVPCSGDGTLRKNPDLWLRWSPNLGIGEHPLQCRILKRGLELLRDPVGDS 183

Query: 360 ----IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-- 413
                +V+S CS +  ++E VV  +L++    V L+          D +      G    
Sbjct: 184 TNYSRLVYSTCSFNPVENEAVVASILQACRGAVRLIEPELLECVLPDPSKNKCSNGHKFK 243

Query: 414 ------------------------------RITPDML-------------EKIDGVSSGM 430
                                          I P +               +I       
Sbjct: 244 ARLGLNNWRVMDKKGVWFTSYDEVPTGQRNHIYPSLFPPSNVADLHLERCRRILPHDQNT 303

Query: 431 DGFFAVALRRLI 442
            GFF   L ++ 
Sbjct: 304 GGFFIAVLEKIA 315


>gi|303281528|ref|XP_003060056.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458711|gb|EEH56008.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 812

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 50/191 (26%)

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P+  FD ++ D PCS  GT+R++P +      +  +     Q ++  +G++ +K GG +V
Sbjct: 361 PEGSFDRIICDVPCSGDGTLRKNPQIWSEWRPEFAMGLHALQLRIAQRGVALLKVGGYMV 420

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA----------------MA 406
           +S CS +  ++E VV ++LR     +ELV  +                            
Sbjct: 421 YSTCSFNPVENEAVVAELLRRCGDAIELVDASDRVKGLRRREGMTTWKVITTVDDEILEH 480

Query: 407 LSPEGWIR-----------ITPDMLE----------------------KIDGVSSGMDGF 433
            S E   R             P M                        ++      M GF
Sbjct: 481 ASYEDCQRDASLGVGLRRAFRPSMWPPVASGVTRLGVRVRGPPLRRCVRLVPQDGDMGGF 540

Query: 434 FAVALRRLIQP 444
           FA  +R++ +P
Sbjct: 541 FAALIRKV-KP 550


>gi|119872274|ref|YP_930281.1| Fmu (Sun) domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673682|gb|ABL87938.1| Fmu (Sun) domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 416

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 150/444 (33%), Gaps = 57/444 (12%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL-----VRAIVNVTLRFLPRIDAV 66
           + +L  V +  ++L           AF+ + QR + L             +R    +  +
Sbjct: 13  ARVLYEVTKNGLTLD---------YAFQKVKQRWRRLDSFKVFYDASFDAVRHYYLLRHL 63

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +L S+  +       + R    ++LY            VE+ +R    R  A+   +
Sbjct: 64  ASALLGSTSAKAVARTWFVYR--ADKLLYNR--------DLVERYRRRVLKRARARPEEA 113

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFD 185
           +    +             S  P   +  L N   +E    +     + +++ +  +K D
Sbjct: 114 LASLETLRGDLPRYLSVKYSYHPAIVETLLANLPPEEVERILDAGNNTWIWLRVNTLKTD 173

Query: 186 IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           ++     L          R+            +  L          QD ++   V     
Sbjct: 174 VDKALKMLEREAEVEPHPRIPFALLLKKAKRPVQYLTAVRTFAAVPQDLASIYAVLSLDP 233

Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                +LDL AAPG K     QL    AKV A D S +R+ +++  L  L       +  
Sbjct: 234 APGEKILDLAAAPGMKTSLIVQLAEGRAKVVAADFSAKRVARMKHLLKALGAGDAVEVVR 293

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD  L+DAPC+S+G   + P V      ++  +    QR+LL   +S  +
Sbjct: 294 ADSRRLKTRRFDKALLDAPCTSSGAFTKEPAVKIYPRVEEAPRYGTLQRELLANALSLAE 353

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
               VV++ CS+  Q+ EEVV                  A     D+A A       R  
Sbjct: 354 K---VVYAVCSIMPQEGEEVVASA------------PAKAEKPHPDLAPAYRGGPGGRTF 398

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P +           + F+   +++
Sbjct: 399 PHI--------HKSEAFYIALVQK 414


>gi|268569134|ref|XP_002640441.1| Hypothetical protein CBG08493 [Caenorhabditis briggsae]
 gi|187032638|emb|CAP28308.1| hypothetical protein CBG_08493 [Caenorhabditis briggsae AF16]
          Length = 416

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 19/263 (7%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
           +E+L +         I +A  + + +  ++ +  E +   ++   + +  I  +     +
Sbjct: 85  REQLIHEMENRFFGKIVEAEDTAVCVPKSLPWYKEAYQTPMSRTAVRSHPILAQLHNFLV 144

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGA 264
                   G    Q+A + IP  L    +   VLDLCAAPG KT Q              
Sbjct: 145 TEAEL---GNLSRQEAVSMIPPLLLAPTSEHYVLDLCAAPGSKTTQLLEMIHENDENPKG 201

Query: 265 KVTALDVSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPK-------KLFDAVLVDAPC 316
            V A DV  +R    +   L R    A  +   DA  +            FD VL D  C
Sbjct: 202 MVIANDVDMKRCYMLIHHTLKRFRTAACAVTCEDAARFPQIADSDGGLIQFDRVLADVIC 261

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  GT+R++P++       D +     Q  +  +G   +K GG +V+S CS++  + E V
Sbjct: 262 SGDGTLRKNPEIWKKWTPQDGLGLHRMQIAIARKGAQQLKVGGRMVYSTCSMNPIEDEAV 321

Query: 377 VQKVLRSSPIPVELVPLNSAYWK 399
           V ++LR S   ++LV  +    +
Sbjct: 322 VAQLLRDSKGSLKLVDTSKMLPE 344


>gi|225429594|ref|XP_002279425.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 504

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 164/457 (35%), Gaps = 68/457 (14%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  ++ +L CV++       +       S     S R++    A+V  TL+ L  I  V
Sbjct: 32  ARREAAKVLQCVLQGDAKRRAV---GSIKSLVYSPSVRNKKATFALVCQTLKHLSIIKDV 88

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           LD      L  K    + L+ +    IL+        +    +  K     +   +L  +
Sbjct: 89  LD--SARILNAKWKRQEGLMYIITYDILF-----GQEISSVGDAEKFLLLQKDAIQL--A 139

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
           + R + R+K++ ++ +  +  IP+  K R                          +K D+
Sbjct: 140 LARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNT--------------------LKLDV 179

Query: 187 ETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           E+  H+L    +      +           + + P    G       ++S+     G   
Sbjct: 180 ESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNG----SGKASSMVAVALGPEP 235

Query: 242 NLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
              VLD C+APG KT  L   +    K+ A ++   R+++L   +        +++  D 
Sbjct: 236 GWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGDF 295

Query: 299 ----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL----------WTRDTDDIVKSACFQ 344
                         A+L+D  CS +GT     D L              T+ + K A FQ
Sbjct: 296 LNLNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAFQ 355

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +K L   +SF      VV+S CS+ + ++E+V++ VL  +      +      W    + 
Sbjct: 356 KKALEHALSFPAVE-KVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFPQWPRRGLP 414

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +    E  +R  P   ++         GFF     R 
Sbjct: 415 VFEGSEHLLRTHPVEDKE---------GFFIALFVRK 442


>gi|254522951|ref|ZP_05135006.1| transcription antitermination factor NusB [Stenotrophomonas sp.
           SKA14]
 gi|219720542|gb|EED39067.1| transcription antitermination factor NusB [Stenotrophomonas sp.
           SKA14]
          Length = 159

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L        +   L+     + A  +    D     A+V+  L     ID  
Sbjct: 27  ARRRAVQALYAWQISGGNAQSLIAQFAHEQAREI---ADLAYFEALVHGVLDNRRDIDEA 83

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L   +       + +LR++  ++ Y LDV    V++ A+E AKR   + H    VN
Sbjct: 84  LGPYLDRGIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAKRF-GSEHGHTYVN 142

Query: 126 SILRRVSREK 135
            +L R + E 
Sbjct: 143 GVLDRAAVEW 152


>gi|270013829|gb|EFA10277.1| hypothetical protein TcasGA2_TC012481 [Tribolium castaneum]
          Length = 767

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 12/235 (5%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270
               +  G   +QD ++ +PV +       S+LD+CAAPG KT Q    I +  K+ A++
Sbjct: 200 QHAAYKNGSIILQDKASCLPVHILDPQPGTSILDMCAAPGMKTTQCAALIDNIGKIYAVE 259

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328
           +  +R   L   ++       + I  D      ++  D   +LVD  CS +G   R    
Sbjct: 260 IGTKRFHTLEKIVESSGASCVEPINSDVLQLTAQQYPDIDYILVDPSCSGSGLTYRVETG 319

Query: 329 LWTRDTD--DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
              +D     I + A FQ K+L   +S       VV+S CS+  +++E+VV++VL +   
Sbjct: 320 QQAQDQHTERIERLAGFQIKILRHALSKFPKVKRVVYSTCSVYAEENEDVVRQVLETC-N 378

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +LVP +    K        S  G +                  GFF     RL
Sbjct: 379 RFKLVPADQFLGKKW-YNFGSSEFGDL---GKFCLYAKPDIDLTSGFFVAVFERL 429


>gi|189241014|ref|XP_968918.2| PREDICTED: similar to williams-beuren syndrome critical region
           protein [Tribolium castaneum]
          Length = 840

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 12/235 (5%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270
               +  G   +QD ++ +PV +       S+LD+CAAPG KT Q    I +  K+ A++
Sbjct: 287 QHAAYKNGSIILQDKASCLPVHILDPQPGTSILDMCAAPGMKTTQCAALIDNIGKIYAVE 346

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328
           +  +R   L   ++       + I  D      ++  D   +LVD  CS +G   R    
Sbjct: 347 IGTKRFHTLEKIVESSGASCVEPINSDVLQLTAQQYPDIDYILVDPSCSGSGLTYRVETG 406

Query: 329 LWTRDTD--DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
              +D     I + A FQ K+L   +S       VV+S CS+  +++E+VV++VL +   
Sbjct: 407 QQAQDQHTERIERLAGFQIKILRHALSKFPKVKRVVYSTCSVYAEENEDVVRQVLETC-N 465

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +LVP +    K        S  G +                  GFF     RL
Sbjct: 466 RFKLVPADQFLGKKW-YNFGSSEFGDL---GKFCLYAKPDIDLTSGFFVAVFERL 516


>gi|159131542|gb|EDP56655.1| methyltransferase (Ncl1), putative [Aspergillus fumigatus A1163]
          Length = 886

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL      +   DA  Y   +                  FD 
Sbjct: 223 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPLPEQDGKPQKNRYLKFDR 282

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PC+  GT R++  V       + +     Q ++L++ +  +K GG VV+S CS++
Sbjct: 283 ILADVPCTGDGTARKNISVWREWGPANALGLHATQVRILVRALQMLKVGGRVVYSTCSMN 342

Query: 370 KQDSEEVVQKVLRSSPI--PVELVP----------------------------------- 392
             ++E VV   +        VE++                                    
Sbjct: 343 PVENEAVVASAISRCGGSANVEILDCSNELPGLKRAAGVRTWKVMDREGRMYNSWKEVEE 402

Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +    +        L  E  IR+ P + +          GFF   L +
Sbjct: 403 QREREGINGLGRIGEGMFPPTGENADLPLERCIRVYPHLQD--------TGGFFITVLEK 454

Query: 441 L----IQPK 445
                 +P+
Sbjct: 455 KSEIRAKPE 463


>gi|70996066|ref|XP_752788.1| methyltransferase (Ncl1) [Aspergillus fumigatus Af293]
 gi|66850423|gb|EAL90750.1| methyltransferase (Ncl1), putative [Aspergillus fumigatus Af293]
          Length = 882

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL      +   DA  Y   +                  FD 
Sbjct: 219 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPLPEQDGKPQKNRYLKFDR 278

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PC+  GT R++  V       + +     Q ++L++ +  +K GG VV+S CS++
Sbjct: 279 ILADVPCTGDGTARKNISVWREWGPANALGLHATQVRILVRALQMLKVGGRVVYSTCSMN 338

Query: 370 KQDSEEVVQKVLRSSPI--PVELVP----------------------------------- 392
             ++E VV   +        VE++                                    
Sbjct: 339 PVENEAVVASAISRCGGSANVEILDCSNELPGLKRAAGVRTWKVMDREGRMYNSWKEVEE 398

Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +    +        L  E  IR+ P + +          GFF   L +
Sbjct: 399 QREREGINGLGRIGEGMFPPTGENADLPLERCIRVYPHLQD--------TGGFFITVLEK 450

Query: 441 L----IQPK 445
                 +P+
Sbjct: 451 KSEIRAKPE 459


>gi|227878672|ref|ZP_03996587.1| tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|227861736|gb|EEJ69340.1| tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01]
          Length = 290

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 62/142 (43%), Gaps = 15/142 (10%)

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +LVDAPCS  G  R++P+ +     D ++     Q+++L + +  ++PGG +++S C+ 
Sbjct: 1   MILVDAPCSGEGMFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTF 60

Query: 369 DKQDSEEVVQKVLRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
             ++ E++V  + +          ++   ++    +  D    L+    +R  P      
Sbjct: 61  APEEDEQIVSWLNKEYGFTILDTGIQTNKIDVGQPEWADGNPDLTK--TLRFWPQDGIGE 118

Query: 424 DGVSSGMDGFFAVALRRLIQPK 445
                     F   L+++ + +
Sbjct: 119 GQ--------FVAVLQKVGKAR 132


>gi|1303915|dbj|BAA12571.1| YqhZ [Bacillus subtilis]
          Length = 131

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I++   ++    +                +V+  L   
Sbjct: 1   MKRRT-AREKALQALFQIDVSDIAVNEAIEHALDEEKTD-------PFFEQLVHGVLEHQ 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            ++D ++   L    L R     + +LR++  ++ Y  D+     ++ A+E AKR   + 
Sbjct: 53  DQLDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRF-GDD 111

Query: 119 HFAKLVNSILRR 130
              K VN +L  
Sbjct: 112 KATKFVNGVLSN 123


>gi|223998784|ref|XP_002289065.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976173|gb|EED94501.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 362

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 107/269 (39%), Gaps = 51/269 (18%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270
           SL G   G   +Q+  + +   +       +VLD+C+APGGKT+ +   I +   V A +
Sbjct: 103 SLNGVLVGKMMLQNLPSVVVAHVLDPQQGETVLDMCSAPGGKTSHVASLIRNNGLVVACE 162

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDA-------------------------------- 298
             ++++   R     +       + +D+                                
Sbjct: 163 KGRKKMVTARDFFQSMGATCIVPLSLDSTKLLIDDGDVFDWKSPKEIVKSASASSKDGLL 222

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                    FD +L+D PCS+ G   R   ++  +   +++K + +Q+  +   +  +K 
Sbjct: 223 SIKGFHPNSFDRILLDPPCSALGL--RPKLLVDVKSLPELLKHSDYQQLFVRSAVPLLKV 280

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSIDMAMALSPEGWIR 414
           GG++ +S C+++  ++E +V+ +L   P  ++LVP+            + ++    G +R
Sbjct: 281 GGVLSYSTCTINASENEGIVKFILSEFPC-MKLVPIADYIPGRAGLEGLGLSDEERGMVR 339

Query: 415 ITPDMLEKIDGVSSGMD--GFFAVALRRL 441
                  + D   +  D  GFF     ++
Sbjct: 340 -------RFDPSDTATDTMGFFVAKFIKI 361


>gi|307297435|ref|ZP_07577241.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916695|gb|EFN47077.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 334

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 13/226 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   LS            +     D A   LS +D+     I+   LR    ID  
Sbjct: 4   ARSIALQTLSFFDANGY-----ISFRKLDIALSTLSSQDRSFCMNIIYGCLRKRVSIDFE 58

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L     +  +++   LR+   QILY+  + +YA +  +V+        + F  LVN
Sbjct: 59  LSRFLTKP-SKLPHAVLNALRIGAFQILYMKSIPEYAALKSSVD----MIGVKEFKGLVN 113

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           ++LR++  E     + +  +   PEW       F   +    + +   +P    +     
Sbjct: 114 AVLRKLINEGPAERKPLNILYSHPEWLVNYWREFAWIDDFEELLEYNQTPPVQTVISFGR 173

Query: 186 IETWAHK--LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
                    L      +    + +   SI +L    E  + +   +
Sbjct: 174 ENELIKNGFLFDKSEYSDLSCVFQKGSSIENLQIIDEIEYLLSKTA 219


>gi|196009916|ref|XP_002114823.1| hypothetical protein TRIADDRAFT_28123 [Trichoplax adhaerens]
 gi|190582885|gb|EDV22957.1| hypothetical protein TRIADDRAFT_28123 [Trichoplax adhaerens]
          Length = 426

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 22/215 (10%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270
           +L G  +   ++Q+  + +   +       ++LD+C+APGGK   +   + +   + ALD
Sbjct: 176 ALNGIGDEFVFLQNLPSVVASHVLNPHEGDTILDMCSAPGGKATHIATLMKNKGTIIALD 235

Query: 271 VSKRRLEKLRCNLDRLHLYAEDII-------EMDAFDYCPKKLF--------DAVLVDAP 315
            SK +L K++ N +RL+L   ++          D                  D +L+D P
Sbjct: 236 KSKSKLHKIKSNAERLNLSCIEVFAFDSTKAVADICQCQEGLRCPPFALESFDRILLDPP 295

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS  G   + P + +     ++   +C+QRKLL Q    +K GGI+V+  C+L   ++E 
Sbjct: 296 CSGMG---QRPCLAYKMSAKELRSYSCYQRKLLSQAFQLLKVGGILVYCTCTLTLSENER 352

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
            +   L + P  +EL   +            L+ +
Sbjct: 353 NISWALSNYP-ELELCNQSPYLGCPGIQVEGLNKD 386


>gi|301097830|ref|XP_002898009.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262106454|gb|EEY64506.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 497

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 115/270 (42%), Gaps = 55/270 (20%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273
           G   G  +VQ+   S+   +        +LD+CAAPGGKT+ +   + +   + A D SK
Sbjct: 222 GVLRGQIYVQNLPCSVVAHVLDPQQGDVILDMCAAPGGKTSHVATLMRNTGTLVACDRSK 281

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDY-------------------------------- 301
           R+  +LR   + LHL   + ++MD+                                   
Sbjct: 282 RKALELRTLCEDLHLECVEPLKMDSTHALLPKDKVDAAPRDGDFTSVAQVLARAKQSTPR 341

Query: 302 ---------CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                       + FD +L+D PCS+ G     P +L   D D++ +    QR  L    
Sbjct: 342 QTRLLQVEGFYLETFDRILLDPPCSALGL---RPRLLHAGDADNLAEYTNMQRNFLWVAA 398

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             +KPGG +V+S C+++ +++E++V   L++ P  ++LV    A+     ++     E  
Sbjct: 399 FLLKPGGTLVYSTCTINPKENEQMVHHALQNYP--LKLVSQGDAHLGDHGLSGQGLNEEE 456

Query: 413 IRITPDMLEKIDGVSSGMD--GFFAVALRR 440
           + +    +++ D  ++ +D  GFF     +
Sbjct: 457 VAL----VQRFDPANTELDTMGFFCAKFVK 482


>gi|171184492|ref|YP_001793411.1| PUA domain-containing protein [Thermoproteus neutrophilus V24Sta]
 gi|170933704|gb|ACB38965.1| PUA domain containing protein [Thermoproteus neutrophilus V24Sta]
          Length = 375

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 29/233 (12%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271
           I  LP + +G+++ Q   A     +       + +DL AAPGGK   L     +V A D 
Sbjct: 167 IRDLPEYRDGLFYSQSLPAIAVGHVAKRAGAATAVDLNAAPGGKATHLAQMDMRVVAFDR 226

Query: 272 SKRRLEKLRCNLDRLHLY-AEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           S  ++E+L+  ++RL L    D+I  D+       P+   D  LVD PC+  G     P 
Sbjct: 227 SWPKIERLKREVERLGLAGNIDVILHDSRYVDRDFPRLRADLALVDPPCTDIGV---RPK 283

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +      +     + +Q + L      +K    V++S C+L   ++E+VV+K        
Sbjct: 284 IYHRVTMEMAKTLSRYQLQFLKTA---LKIASNVIYSTCTLTYIENEDVVKK-------- 332

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                + +     +       PE   R  P +            GFF   L R
Sbjct: 333 --SGAVPADVGLDVGGPGWGCPE-CRRFLPHV--------HDTPGFFIALLSR 374


>gi|126175357|ref|YP_001051506.1| transcription antitermination protein NusB [Shewanella baltica
           OS155]
 gi|146293868|ref|YP_001184292.1| transcription antitermination protein NusB [Shewanella putrefaciens
           CN-32]
 gi|153001667|ref|YP_001367348.1| transcription antitermination protein NusB [Shewanella baltica
           OS185]
 gi|160876405|ref|YP_001555721.1| transcription antitermination protein NusB [Shewanella baltica
           OS195]
 gi|217972400|ref|YP_002357151.1| transcription antitermination protein NusB [Shewanella baltica
           OS223]
 gi|304410187|ref|ZP_07391806.1| NusB antitermination factor [Shewanella baltica OS183]
 gi|307302102|ref|ZP_07581860.1| NusB antitermination factor [Shewanella baltica BA175]
 gi|166215715|sp|A3D7C4|NUSB_SHEB5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215716|sp|A6WR46|NUSB_SHEB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215718|sp|A4Y960|NUSB_SHEPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035904|sp|A9KYJ0|NUSB_SHEB9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772654|sp|B8E6W7|NUSB_SHEB2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|125998562|gb|ABN62637.1| NusB antitermination factor [Shewanella baltica OS155]
 gi|145565558|gb|ABP76493.1| NusB antitermination factor [Shewanella putrefaciens CN-32]
 gi|151366285|gb|ABS09285.1| NusB antitermination factor [Shewanella baltica OS185]
 gi|160861927|gb|ABX50461.1| NusB antitermination factor [Shewanella baltica OS195]
 gi|217497535|gb|ACK45728.1| NusB antitermination factor [Shewanella baltica OS223]
 gi|304351596|gb|EFM15995.1| NusB antitermination factor [Shewanella baltica OS183]
 gi|306914140|gb|EFN44561.1| NusB antitermination factor [Shewanella baltica BA175]
 gi|315268595|gb|ADT95448.1| NusB antitermination factor [Shewanella baltica OS678]
 gi|319427240|gb|ADV55314.1| NusB antitermination factor [Shewanella putrefaciens 200]
          Length = 134

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + L   D    R + +    
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QSLDGVDVAYFRELFSGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ++D ++   L   +       + ++R++  ++ +  DV     ++ A+E AK    +
Sbjct: 58  KKTQLDELIIPHLERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGAD 117

Query: 118 RHFA 121
               
Sbjct: 118 ESHK 121


>gi|296242733|ref|YP_003650220.1| Fmu (Sun) domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296095317|gb|ADG91268.1| Fmu (Sun) domain protein [Thermosphaera aggregans DSM 11486]
          Length = 382

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 104/237 (43%), Gaps = 23/237 (9%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTA 268
           I  L  + +G+ + Q   A +            V DL A+PGGKT  ++      +++ A
Sbjct: 160 INELSVYRKGLIYPQGLPAMVTTLFLNPREGDLVADLNASPGGKTGHVVQYTKGKSRIIA 219

Query: 269 LDVSKRRLEKLRCNLDRLHLY-AEDIIEMD----AFDYCPKKLFDAVLVDAPCSSTGTIR 323
            D +  ++E L+ NL++L L      I  D      D+   +  + VL+D PCS+ G   
Sbjct: 220 FDRNTPKIEVLKTNLEKLGLNINVLAIPYDSRYAHLDFNLNEKVNKVLIDPPCSNLGV-- 277

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
             P + + +   DI+ +A +Q++ L    S +K GGI V+S C+L  +++EEVV   ++ 
Sbjct: 278 -RPKLTFDKTLTDILNNANYQKQFLKTAYSILKKGGIAVYSTCTLTLRENEEVVSYAVKE 336

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +    +     +      R  P        ++S M G+F   L++
Sbjct: 337 LGFESVEADSRFSRLDKVYFEDIV----GYRFHP--------LNSDMPGYFIALLKK 381


>gi|119495090|ref|XP_001264338.1| methyltransferase (Ncl1), putative [Neosartorya fischeri NRRL 181]
 gi|119412500|gb|EAW22441.1| methyltransferase (Ncl1), putative [Neosartorya fischeri NRRL 181]
          Length = 886

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL      +   DA  Y   +                  FD 
Sbjct: 223 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPLPEQDGKPQKNRYLKFDR 282

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PC+  GT R++  V       + +     Q ++L++ +  +K GG VV+S CS++
Sbjct: 283 ILADVPCTGDGTARKNISVWREWGPANALGLHATQVRILVRALQMLKVGGRVVYSTCSMN 342

Query: 370 KQDSEEVVQKVLRSSPI--PVELVP----------------------------------- 392
             ++E VV   +        VE++                                    
Sbjct: 343 PVENEAVVASAITRCGGSANVEILDCSNELPGLKRADGVRTWKVMDREGRMYNSWEEVEE 402

Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +    +        L  E  IR+ P + +          GFF   L +
Sbjct: 403 QREREGINGLGRIGEGMFPPTGENADLPLERCIRVYPHLQD--------TGGFFITVLEK 454

Query: 441 L----IQPK 445
                 +P+
Sbjct: 455 KSEIRAKPE 463


>gi|44890014|emb|CAF32132.1| possible NOL1/NOP2/SUN family protein [Aspergillus fumigatus]
          Length = 934

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL      +   DA  Y   +                  FD 
Sbjct: 219 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPLPEQDGKPQKNRYLKFDR 278

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PC+  GT R++  V       + +     Q ++L++ +  +K GG VV+S CS++
Sbjct: 279 ILADVPCTGDGTARKNISVWREWGPANALGLHATQVRILVRALQMLKVGGRVVYSTCSMN 338

Query: 370 KQDSEEVVQKVLRSSPI--PVELVP----------------------------------- 392
             ++E VV   +        VE++                                    
Sbjct: 339 PVENEAVVASAISRCGGSANVEILDCSNELPGLKRAAGVRTWKVMDREGRMYNSWKEVEE 398

Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +    +        L  E  IR+ P + +          GFF   L +
Sbjct: 399 QREREGINGLGRIGEGMFPPTGENADLPLERCIRVYPHLQD--------TGGFFITVLEK 450

Query: 441 L----IQPK 445
                 +P+
Sbjct: 451 KSEIRAKPE 459


>gi|325114098|emb|CBZ49656.1| nol1/NOP2/sun family methyltransferase, related [Neospora caninum
           Liverpool]
          Length = 1010

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 84/252 (33%), Gaps = 46/252 (18%)

Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQDASASI 232
              E    +L  +    G          +    GF                  Q+A + +
Sbjct: 179 TGPEETLQRLPWMPHEIGWQWSTVCKIRLRRDEGFRRIRRHIMNEDFRGGLSRQEAVSML 238

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK-------------------------VT 267
           P           ++D+CA+PG KT Q++                              V 
Sbjct: 239 PALFLDVRPEHRIMDMCASPGSKTTQILDMMQWGAVNSLSQGDADSPALPGLEPPTGFVI 298

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----------FDAVLVDAPCS 317
           A D+  +R + L     ++   A  I   DA  +               FD +L D PCS
Sbjct: 299 ANDIDAQRTQTLAHQCMKVPSAAIAISCSDASFFPLTLPDGPTGETRLQFDRILADVPCS 358

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             GT+R++ D+         V     Q  +L +G+  ++ GG +V+S CSL   + E V+
Sbjct: 359 GDGTMRKNGDLWRKWSATGSVSLHSIQLGILHRGLQLLRVGGRLVYSTCSLSPLEDEAVI 418

Query: 378 QKVLRSSPIPVE 389
              L      +E
Sbjct: 419 AAALLQYGDAIE 430


>gi|295671506|ref|XP_002796300.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Paracoccidioides
           brasiliensis Pb01]
 gi|226284433|gb|EEH39999.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Paracoccidioides
           brasiliensis Pb01]
          Length = 906

 Score = 99.6 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 60/239 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309
            A D   +R   L   + RL+     +   DA  Y   K                  FD 
Sbjct: 274 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSIKLPSLPPPEGKPVRNRYLKFDR 333

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L + +  +K GG VV+S CS++
Sbjct: 334 ILADVPCSGDGTSRKNVNVWKDWNPSNALGLHTTQCRILTRALQMLKVGGRVVYSTCSMN 393

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRITPD------ 418
             ++E V+  V+     P  V ++  ++      +   +      +   RI  +      
Sbjct: 394 PVENEAVIASVIDRCGGPSKVHIMDCSNELPTLKRFPGLKSWSVMDKQGRIWANWKDVED 453

Query: 419 ----------------------------MLEKIDGVSSGMDGFFAVALRR----LIQPK 445
                                          +I         FF   L +      +P+
Sbjct: 454 AVSQGDETLSRMVEGMFSPSEEEGIDLSRCMRIYPHQQDTGAFFITVLEKRSDIKARPE 512


>gi|167623143|ref|YP_001673437.1| transcription antitermination protein NusB [Shewanella halifaxensis
           HAW-EB4]
 gi|189035905|sp|B0TJZ1|NUSB_SHEHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167353165|gb|ABZ75778.1| NusB antitermination factor [Shewanella halifaxensis HAW-EB4]
          Length = 135

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +     +   D    R ++     
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGV---DIAYFRELLGGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ++D ++   L   L       + ++R++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KKSQLDELITPFLTRPLDEVDPVEKAIVRIATYELTFRKDVPYKVAINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|332299991|ref|YP_004441912.1| Fmu (Sun) domain protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177054|gb|AEE12744.1| Fmu (Sun) domain protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 461

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 31/313 (9%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-----TWAHKLNAVML 198
             + +P   + +L+  Y  E    I +A  +   + L +              +  A+  
Sbjct: 1   MHTPVPSELRAKLQLDYP-EHAARIVEALETLPTVSLRLNPARTLTTPPHAELRDGAIPW 59

Query: 199 PTGGIRLKELPESIV--SLPGFAEGVWWVQDASASIPVQLFGTLNNLSV----LDLCAAP 252
               +    L E       P +  G ++VQDASA     ++  L+  +     LDLCAAP
Sbjct: 60  LPAELEGYWLSERPTFALDPLWHAGAYYVQDASAMTLATIWERLDWHTAPRLALDLCAAP 119

Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCN-LDRLHLYAEDIIEMDAFDYCP--KKL 306
           GGK      L+     + + ++  +R + L  N +         I + D     P  +  
Sbjct: 120 GGKSTLLRDLLPEETLLVSNEILPKRCKILVENLVKWCGADQMIITQEDPQQLTPLLRGA 179

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            D +LVDAPCS  G +RR  +         +      QR +L + +  + P GI++++ C
Sbjct: 180 CDLILVDAPCSGEGLMRRDEEARRMWSPQLVSDCVTRQRAILQEAMRMLAPEGILLYATC 239

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           +L++++++++VQ +L   P   EL+ L+ +  +   +A A +    + + P ++      
Sbjct: 240 TLNQEENDQMVQWLLDHYPC--ELIDLSRSAER---IAGAYATSYGLHLWPGIVRGEGQ- 293

Query: 427 SSGMDGFFAVALR 439
                  +  ALR
Sbjct: 294 -------YLAALR 299


>gi|311029972|ref|ZP_07708062.1| sun protein [Bacillus sp. m3-13]
          Length = 126

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R ++   L  V +K+     LL+          LS++D  L   IV  T++  
Sbjct: 1   MK---NVRELALEALLNVEKKQAYSNLLLNNYLDSGK---LSKKDAGLFTEIVYGTIQRT 54

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
             +D  L   +     + +  ++ LL++++ Q+LYLD V   A +  AVE AK+ +
Sbjct: 55  ITLDYYLASYIEKQ-KKLQDWVKVLLKMTLYQMLYLDKVPARAAIYEAVEIAKKRR 109


>gi|242005991|ref|XP_002423843.1| williams-beuren syndrome critical region protein, putative
           [Pediculus humanus corporis]
 gi|212507059|gb|EEB11105.1| williams-beuren syndrome critical region protein, putative
           [Pediculus humanus corporis]
          Length = 503

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 95/247 (38%), Gaps = 23/247 (9%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272
             +  G   +QD ++ +P  L     N   LD+CAAPG KT     ++ +   V A ++ 
Sbjct: 258 ELYQNGSILLQDKASCLPAFLLKPTPNSIALDMCAAPGMKTTHLSAIMRNKGTVYASEMD 317

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD---------AFDYCPKKLFDAVLVDAPCSSTGTIR 323
             R + L   +          + +D                K  + +LVD  CS +G + 
Sbjct: 318 PNRYQVLCDLIKNSGCNNVITLNIDALKLNADANDSQMEWCKDVEYILVDPSCSGSGIVD 377

Query: 324 R-HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R +      ++   I K   FQ KLLL  ++       VV+S CS+  +++E++V+ VL 
Sbjct: 378 RMNIFEGEKKNNKRIKKLCGFQFKLLLHALTKFPNAKRVVYSTCSVLAEENEKIVEDVLA 437

Query: 383 SSPIPVELVPLNSAYWKSIDMAM-ALSPEGWIR----ITPD--MLEKIDGVSSGMDGFFA 435
                 E  P +      ++  +     + WIR      P        D      +GFF 
Sbjct: 438 KLN---ESTPDDEGNENFLNFNLVEPLKDVWIRRGSDRYPHGKYCIFSDPEHDLTNGFFI 494

Query: 436 VALRRLI 442
               R +
Sbjct: 495 AVFERTV 501


>gi|330505151|ref|YP_004382020.1| transcription antitermination protein NusB [Pseudomonas mendocina
           NK-01]
 gi|328919437|gb|AEB60268.1| transcription antitermination protein NusB [Pseudomonas mendocina
           NK-01]
          Length = 159

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR ++   L         L  +      D+ F   S+ D      I++   R    
Sbjct: 20  ARREARTLAMQALYSWHIAGQPLNEIEAQFRVDNDF---SKVDGAYFHEILHGVPRQKTE 76

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D     +L   L         +LR+S  ++   +DV    V++  +E AK         
Sbjct: 77  LDGAFTPLLDRPLEEIDPVELAILRLSTYELKNRVDVPYKVVINEGIELAKVFGATDG-H 135

Query: 122 KLVNSILRR 130
           K VN IL +
Sbjct: 136 KFVNGILDK 144


>gi|24374971|ref|NP_719014.1| transcription antitermination protein NusB [Shewanella oneidensis
           MR-1]
 gi|32171648|sp|Q8EBP4|NUSB_SHEON RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24349697|gb|AAN56458.1|AE015783_1 N utilization substance protein B [Shewanella oneidensis MR-1]
          Length = 134

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 42/124 (33%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + L   D    R +      
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QSLDGVDVAYFRELFAGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ++D ++   L   +       + ++R++  ++ +  DV     ++ A+E AK    +
Sbjct: 58  KKTQLDELIIPHLDRPIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGAD 117

Query: 118 RHFA 121
               
Sbjct: 118 ESHK 121


>gi|24668781|ref|NP_730761.1| CG11109, isoform B [Drosophila melanogaster]
 gi|23094335|gb|AAN12208.1| CG11109, isoform B [Drosophila melanogaster]
 gi|209417956|gb|ACI46516.1| FI01826p [Drosophila melanogaster]
          Length = 439

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 24/234 (10%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT+ +   +     V ALD S  R+  +   
Sbjct: 212 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 271

Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           L         +                        P + FD +L+DAPCS  G   R   
Sbjct: 272 LGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 329

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
               +    +      QR+L  Q +  V+PGGI+V+S C++ + + E +V   LR   + 
Sbjct: 330 SCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKF-VE 388

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + L       W    + +        R+         G ++   GFF    +++
Sbjct: 389 LRLTDATPR-WGGPGLPLPGFEACKSRLL--QRFGPSGANADTVGFFIAKFQKI 439


>gi|21356513|ref|NP_649425.1| CG11109, isoform A [Drosophila melanogaster]
 gi|7296593|gb|AAF51875.1| CG11109, isoform A [Drosophila melanogaster]
 gi|16768466|gb|AAL28452.1| GM05221p [Drosophila melanogaster]
 gi|220943156|gb|ACL84121.1| CG11109-PA [synthetic construct]
 gi|220953252|gb|ACL89169.1| CG11109-PA [synthetic construct]
          Length = 358

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 24/234 (10%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT+ +   +     V ALD S  R+  +   
Sbjct: 131 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 190

Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           L         +                        P + FD +L+DAPCS  G   R   
Sbjct: 191 LGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 248

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
               +    +      QR+L  Q +  V+PGGI+V+S C++ + + E +V   LR   + 
Sbjct: 249 SCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKF-VE 307

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + L       W    + +        R+         G ++   GFF    +++
Sbjct: 308 LRLTDATPR-WGGPGLPLPGFEACKSRLL--QRFGPSGANADTVGFFIAKFQKI 358


>gi|269862221|ref|XP_002650752.1| multisite-specific tRNA m(5)C methyltransferase [Enterocytozoon
           bieneusi H348]
 gi|220065670|gb|EED43304.1| multisite-specific tRNA m(5)C methyltransferase [Enterocytozoon
           bieneusi H348]
          Length = 338

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 34/165 (20%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           K  FD +  D PCS  GT+R++  +          +    Q K+L + +S +K GGI+ +
Sbjct: 3   KNFFDRICCDVPCSGDGTVRKNMSIFNDWSVKRACQLIDLQIKILQRSLSTLKEGGILTY 62

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM------------------ 405
           S CSL+  ++E V+ + L + P    ++P  +    S                       
Sbjct: 63  STCSLNPLENEYVINRALLNFPNCKIILPQEAFNLVSYTKDKTKLMIRKGIPFFQYTIDS 122

Query: 406 ------ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                     E  IRI P          +   GFF   +++  QP
Sbjct: 123 KRYEYNDYELEKCIRIYPHD--------NDTGGFFIAIIQK--QP 157


>gi|302665742|ref|XP_003024478.1| hypothetical protein TRV_01308 [Trichophyton verrucosum HKI 0517]
 gi|291188535|gb|EFE43867.1| hypothetical protein TRV_01308 [Trichophyton verrucosum HKI 0517]
          Length = 854

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 60/238 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310
            A D   +R   L   + RL+     +   DA  Y   K                 FD +
Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGQPAKNRYLKFDRI 299

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT R++ ++    +  + +     Q ++L + +  +K GG VV+S CS++ 
Sbjct: 300 LADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359

Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMA-----------------MALSPEG 411
            ++E ++  V+        VE+V   +   +                       A + E 
Sbjct: 360 IENEAIISHVIDRCGGSSKVEIVDCENQLPELKRRPGLKTWKIMDKTGRIYENWAEAEEE 419

Query: 412 WIRITP---------------------DMLEKIDGVSSGMDGFFAVALRR----LIQP 444
             ++ P                         ++        GFF   L +     ++P
Sbjct: 420 VRKLNPAASRLVEGMFPPSGDADVGDLTRCMRVYPHMQDTGGFFITVLEKKREIKVKP 477


>gi|213408467|ref|XP_002175004.1| NOL1/NOP2/Sun domain family member 5B [Schizosaccharomyces
           japonicus yFS275]
 gi|212003051|gb|EEB08711.1| NOL1/NOP2/Sun domain family member 5B [Schizosaccharomyces
           japonicus yFS275]
          Length = 465

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 152/450 (33%), Gaps = 59/450 (13%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++ +L  +  ++ S+  L    + +  F      D     A+V  TL++   +D V++  
Sbjct: 7   AAGVLDDLKERKGSIKQL---AFKNKKF------DPKRTYALVCETLKYTKVLDEVIER- 56

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
               L ++K   + L  V V  +L     +     +        + + N  F K      
Sbjct: 57  -SELLKKEKKLTRNLAIVLVHDLLLTKRGIQASGGLYKDAILRNKTRLNGEFVKYKIQKG 115

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188
            + + E             +P W +        +E +  +           +     I+ 
Sbjct: 116 AKSNEELALKNPVN-----LPRWVRVNTILSNKEEVIKGLG----------VEPVDSIDA 160

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVL 246
                         +   E   S V    + +G   +QD ++  P             ++
Sbjct: 161 LVPGKVYFDDCVENLLALESNISFVGNELYEKGKIIIQDKASCFPAAVLHGMPGPVGDII 220

Query: 247 DLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-- 302
           D CAAPG KT  L      AK+ A +    R++ L+  +        +I  MD       
Sbjct: 221 DGCAAPGNKTTHLAALYPNAKIFAFERDAYRVKTLQKMVRISGAKNVEIQHMDFTHTDVH 280

Query: 303 --PKKLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDD----IVKSACFQRKLLLQGISFV 355
                    +L+D  CS +G + R   +L   +D  D        + FQ  +L   +SF 
Sbjct: 281 DEKYANVTHILLDPSCSGSGIVSRQDFLLVNEQDPVDEGDRKENLSKFQSTILKHALSF- 339

Query: 356 KPGGIVV-FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA------MALS 408
            P    V +S CS+ ++++E+VV +VL+         PL S   +  D            
Sbjct: 340 -PNVRNVTYSTCSVHREENEQVVDEVLKQEKDW-SCAPLESTLPQWPDRGVPEYCSDPSM 397

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
             G IR  P           G  GFF   L
Sbjct: 398 AGGMIRCEPGRY--------GTIGFFVANL 419


>gi|321398527|emb|CBZ08879.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 634

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 95/271 (35%), Gaps = 52/271 (19%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------LIVSGAKVTALDVSK 273
           G    Q+  + +P  L      + VLD+CAAPG KT+Q              V A D   
Sbjct: 130 GYLTRQETVSMLPPLLLQVGPGMRVLDMCAAPGSKTSQLLELLLTGESERGVVVANDAKA 189

Query: 274 RRLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
            RL+ L    +R      HL   +          P + FD VL D  CS  GT+R+  D+
Sbjct: 190 SRLDVLHHQTNRAAGAHLHLIITNTDATRFPLLPPAERFDRVLCDVMCSGDGTLRKSIDM 249

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
               D+         Q ++LL+G++  K GGIVV+S CSL+  + E VV   L  +    
Sbjct: 250 WPRWDSLQGANLHHTQMRVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTKGTF 309

Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420
           EL+                                        A +     +  P M   
Sbjct: 310 ELIDPTPLLHGLCASPGMTSWTVTTRDLTTALHNYEDAKAFMEAQTDRCTFQYAPSMFAN 369

Query: 421 ------------EKIDGVSSGMDGFFAVALR 439
                        +I   +    GFF  ALR
Sbjct: 370 TELLVDQHIERTRRILPHTQDTGGFFVAALR 400


>gi|50550307|ref|XP_502626.1| YALI0D09691p [Yarrowia lipolytica]
 gi|49648494|emb|CAG80814.1| YALI0D09691p [Yarrowia lipolytica]
          Length = 506

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 133/429 (31%), Gaps = 47/429 (10%)

Query: 44  RDQILVRAIVNVTLRFLPRIDAVLD----FVLISSLPRKKYSLQQLLRVSVAQILYLDVA 99
            D   V A+V   L++ P +  ++      +       K      +L      +L     
Sbjct: 37  ADPKHVFAVVFSALKYRPFLVDIIKAAEIPISDKPGKTKITMNMAILM--AHDLLCSRSK 94

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLV--NSILRRVSREKIELLQRIAGISIIPEWFKERLE 157
                      +K   ++   A      S L +   +                    R+ 
Sbjct: 95  RLT-------ISKGPLKDMFLAHQTRLKSELTKFKLKHKVSDLDELVEEDSTPIRWIRIN 147

Query: 158 NFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSL 215
                E      +   +PL   L     IE    +   +        L      E + + 
Sbjct: 148 TVLSNEE-----EFHKTPLIARLKPIDKIEGGTIQPGQIYKDIHVPHLYGIHPREKLANC 202

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDV 271
             + +G   +QD ++  P  +        ++D C+APG KT  L          + A + 
Sbjct: 203 ELYKQGKIIIQDRASCFPATILNPQPGQKLIDCCSAPGNKTTHLASFVAGTPGSIDAFEK 262

Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRRHP-- 326
              R + L   +     +    +   D  D  P    +   +LVD  CS +G   R    
Sbjct: 263 DAIRAKLLTKMVKTAGCHNCIKVNVGDFTDTNPDDYPEVEGILVDPSCSGSGIFGRKHED 322

Query: 327 --------DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
                   +    +D   + K + FQ +++   +        VV+S CS+   ++EEVVQ
Sbjct: 323 DAAAAEETNRDDQKDQFRLHKLSEFQYRIVKHAL-LFGSAKKVVYSTCSIHNIENEEVVQ 381

Query: 379 KVLRSSPIPVE-------LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           K+L  S +  E       L  L     +      +  PE       + + +      G  
Sbjct: 382 KLLLDSQVAAEGWQLAPKLRVLPLWTRRGDPNGFSDFPENQRAALAEGVVRALPKVDGGI 441

Query: 432 GFFAVALRR 440
           GFFA    +
Sbjct: 442 GFFAACFEK 450


>gi|221310355|ref|ZP_03592202.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221314679|ref|ZP_03596484.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221319602|ref|ZP_03600896.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323878|ref|ZP_03605172.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|255767541|ref|NP_390312.2| transcription antitermination protein NusB [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|321311916|ref|YP_004204203.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
 gi|251757301|sp|P54520|NUSB_BACSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225185169|emb|CAB14363.2| transcription termination factor NusB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484874|dbj|BAI85949.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018190|gb|ADV93176.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
          Length = 131

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I++   ++    +                +V+  L   
Sbjct: 1   MKRRT-AREKALQALFQIDVSDIAVNEAIEHALDEEKTD-------PFFEQLVHGVLEHQ 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            ++D ++   L    L R     + +LR++  ++ Y  D+     ++ A+E AKR   + 
Sbjct: 53  DQLDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRF-GDD 111

Query: 119 HFAKLVNSILRR 130
              K VN +L  
Sbjct: 112 KATKFVNGVLSN 123


>gi|118573084|sp|Q63ZY6|NSN5C_HUMAN RecName: Full=Putative methyltransferase NSUN5C; AltName:
           Full=NOL1/NOP2/Sun domain family member 5C; AltName:
           Full=Williams-Beuren syndrome chromosomal region 20C
           protein
          Length = 315

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 23/251 (9%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L                  KT+ L     
Sbjct: 6   VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLK 65

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317
           +  K+ A D+  RRL  +   L    +   ++ E D     P          VL+D  CS
Sbjct: 66  NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125

Query: 318 STGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373
            +G   R  +     T     +   A FQ++ L   ++F  ++    +V+S CSL ++++
Sbjct: 126 GSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEEN 182

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E++VQ  L+ +P    L P   A      ++     E  +R +P              GF
Sbjct: 183 EDMVQDALQQNPGAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GF 233

Query: 434 FAVALRRLIQP 444
           F   + R+  P
Sbjct: 234 FVAVIERVEMP 244


>gi|127799886|gb|AAH82753.2| NOL1/NOP2/Sun domain family, member 5C [Homo sapiens]
          Length = 315

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 23/251 (9%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L                  KT+ L     
Sbjct: 6   VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLK 65

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317
           +  K+ A D+  RRL  +   L    +   ++ E D     P          VL+D  CS
Sbjct: 66  NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125

Query: 318 STGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373
            +G   R  +     T     +   A FQ++ L   ++F  ++    +V+S CSL ++++
Sbjct: 126 GSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEEN 182

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E++VQ  L+ +P    L P   A      ++     E  +R +P              GF
Sbjct: 183 EDMVQDALQQNPGAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GF 233

Query: 434 FAVALRRLIQP 444
           F   + R+  P
Sbjct: 234 FVAVIERVEMP 244


>gi|299472192|emb|CBN79695.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 765

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 85/235 (36%), Gaps = 42/235 (17%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA------------- 264
              G    Q+A + +P           VLD+CAAPG KTAQL+   +             
Sbjct: 1   MESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMVSAPSATAAAAGGGG 60

Query: 265 -----------KVTALDVSKRRLEKLRCNLDRLHLYAEDII-----------EMDAFDYC 302
                       V A D  + R   L     R+   A  I               A    
Sbjct: 61  GGDGGPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGS 120

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            K +FD VL D PCS  GT+R+ P +  T      +     Q  + L+G + +K GG +V
Sbjct: 121 DKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKIGGKMV 180

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           +S CSL+  + E VV +VLR     +EL    S                 +   P
Sbjct: 181 YSTCSLNPIEDEAVVAEVLRRCGGNLELEDCRSTLPGLKTRP-------GLHTWP 228



 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E+ ++  LR  P   E+    +                 +R+  +   ++        GF
Sbjct: 317 EDAIKAGLRHHPSFAEVDTATTRKMIPSFFPPDEDKAKALRL--ERCMRMLPQDQDTGGF 374

Query: 434 FAVALRR 440
           F   + +
Sbjct: 375 FVAVMVK 381


>gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jonesia denitrificans DSM 20603]
 gi|256686091|gb|ACV08984.1| NusB antitermination factor [Jonesia denitrificans DSM 20603]
          Length = 138

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  + ++L    ++ +S   +LD+   D        +       +V   +   
Sbjct: 1   MAARSKARKRAVNILYEADQRNLSAAQVLDIRLADPGVPSALPQ---YAVDLVEGVILHR 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID +L+       L R     + +LR+   ++LY  DV D   +D AV+ A+      
Sbjct: 58  ERIDEILETYSRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVDLARE-LSTE 116

Query: 119 HFAKLVNSILRRVSR 133
                VN +L RV  
Sbjct: 117 DSPSFVNGLLGRVMD 131


>gi|56461241|ref|YP_156522.1| transcription termination factor NusB [Idiomarina loihiensis L2TR]
 gi|81599971|sp|Q5QVE5|NUSB_IDILO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56180251|gb|AAV82973.1| Transcription termination factor NusB [Idiomarina loihiensis L2TR]
          Length = 139

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +      + S + +      ++     S+ D      +V     
Sbjct: 1   MKPAARRKARKLAVQAIYSWQLSQNSFSDIEAQFLTENDT---SKVDVDYFLELVRGVGG 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
               +D  L+  L   +         +LR++  ++   +DV     ++ A+E AK    +
Sbjct: 58  HYRTLDEALEPFLDRPIKELDPIELAVLRLAAYELRERVDVPYKVAINEAIELAKSFGAD 117

Query: 118 RHFAKLVNSILRRVSREKIELLQ 140
               + VN +L +         Q
Sbjct: 118 ES-HRFVNGVLDKAVDTFRPTRQ 139


>gi|16226075|gb|AAL16068.1|AF420250_1 NOL1R2 [Homo sapiens]
 gi|10432924|dbj|BAB13875.1| unnamed protein product [Homo sapiens]
          Length = 315

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 93/251 (37%), Gaps = 23/251 (9%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L                  KT+ L     
Sbjct: 6   VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRRAPMSWMPVPPQAIKTSHLAALLK 65

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317
           +  K+ A D+  RRL  +   L    +   ++ E D     P          VL+D  CS
Sbjct: 66  NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125

Query: 318 STGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373
            +G   R        T     +   A FQ++ L   ++F  ++    +V+S CSL ++++
Sbjct: 126 GSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEEN 182

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           E++VQ  L+ +P    L P   A      ++     E  +R +P              GF
Sbjct: 183 EDMVQDALQQNPDAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GF 233

Query: 434 FAVALRRLIQP 444
           F   + R+  P
Sbjct: 234 FVAVIERVEMP 244


>gi|193700064|ref|XP_001946119.1| PREDICTED: putative methyltransferase NSUN5-like [Acyrthosiphon
           pisum]
          Length = 459

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 17/244 (6%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
           +         +  +  G   VQD ++ +   L    +N +VLD+CAAPG KT+    ++ 
Sbjct: 67  VFNSKVKFYEIEEYNNGSLIVQDKASCLAAYLLNPKSNSTVLDMCAAPGMKTSHLAAIMQ 126

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
           +  K+ A+D SK R   L+  L++  +   +   MDA  +        +L+D  CS +G 
Sbjct: 127 NTGKLYAVDRSKERFYILQNMLEKYGVQNVETFNMDALTFPYYDDVKYILLDPSCSGSGI 186

Query: 322 IRRHPDVLWTRDTDDI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           + R  +    ++ +      K A    +LL   +        +V+S CS + +++E VV 
Sbjct: 187 VDRVRNDSSGQNQNFQTRLKKLANVHAQLLNHALKSYPNLERLVYSTCSANHEENEAVVD 246

Query: 379 KVLRSSPIPVELVPLNS--AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           + L  +    +L+        W +         E  +                 +GFF  
Sbjct: 247 EALSIN-GKFKLLDCTKMVKGWTNKGAPGYDCSEMCL--------NAVPSVDCTNGFFIS 297

Query: 437 ALRR 440
              R
Sbjct: 298 VFVR 301


>gi|221633595|ref|YP_002522821.1| transcription antitermination factor NusB [Thermomicrobium roseum
           DSM 5159]
 gi|221156287|gb|ACM05414.1| transcription antitermination factor NusB [Thermomicrobium roseum
           DSM 5159]
          Length = 168

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR+++  +L  V     SL  +L+      +   ++Q  +     +V        RI
Sbjct: 34  RRQARILALQILYEVDVANHSLEEVLE---RHRSQASIAQPVRRYAERLVTGVWADRERI 90

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           D ++     +  + +     + +LR+++ ++L+  DV   A ++ AVE AK+       +
Sbjct: 91  DRMIAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQY-GGESSS 149

Query: 122 KLVNSILRR 130
           + VN +L  
Sbjct: 150 RFVNGVLGT 158


>gi|212634192|ref|YP_002310717.1| transcription antitermination protein NusB [Shewanella
           piezotolerans WP3]
 gi|226738906|sp|B8CJN3|NUSB_SHEPW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|212555676|gb|ACJ28130.1| Antitermination protein NusB [Shewanella piezotolerans WP3]
          Length = 135

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + +   D    R ++     
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QNVDGVDIAYFRELLGGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ++D ++   L+  +       + ++R++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KKSQLDELITPFLVRPMDEVDPVEKAIVRLAAYELTFRKDVPYKVAINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|195496828|ref|XP_002095858.1| GE22645 [Drosophila yakuba]
 gi|194181959|gb|EDW95570.1| GE22645 [Drosophila yakuba]
          Length = 440

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 28/236 (11%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT+ +   I  G  V ALD S  R+  +   
Sbjct: 212 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELIGDGGSVVALDNSASRVRSMLLK 271

Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           L         + +                      P   FD +L+DAPCS  G   R   
Sbjct: 272 LKHYKSITAHVFDSTKALAPEAPSAPFGEFTAPPFPCASFDRILIDAPCS--GLGNRPQL 329

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
               +    +      QR+L  Q +  ++PGGI+V+S C++ + + E +V   L+  P  
Sbjct: 330 SCSIKQAKVLSSYPNIQRRLFEQAVPLLRPGGILVYSTCTVTEDECECIVAWALKKFPEL 389

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVALRRL 441
                        + +    + +   R+     ++     +  D  GFF     + 
Sbjct: 390 HLTDATPRWGGSGLPLPGFATCKS--RLL----QRFGPTGANADTVGFFIAKFHKK 439


>gi|46805843|dbj|BAD17177.1| putative Williams Beuren syndrome critical region 20A isoform 1
           [Oryza sativa Japonica Group]
          Length = 472

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 27/234 (11%)

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281
            +  ++ +            V+D CAAPG KT  L   +     +TA +++K R + L+ 
Sbjct: 198 HKGKASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERTKTLQN 257

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVL---WTRDT 334
            + R      + I  D  D            A+L+D  CS +G      D L    +R  
Sbjct: 258 TIRRSGANNIETINGDFLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDHLLPSHSRGN 317

Query: 335 DDIV-------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
            D         K + FQRK L   +SF      VV+S CS+ + ++E+VV  VL  +   
Sbjct: 318 QDDASTSSRIRKLSAFQRKALSHALSFPSVE-RVVYSTCSIHQAENEDVVSSVLPLASSL 376

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              +      W+   + +    E  +R  P           G++GFF     R 
Sbjct: 377 GFELATPFPQWRRRGLPVFEGSEHLLRTDP---------EDGLEGFFISLFVRK 421


>gi|119774157|ref|YP_926897.1| transcription antitermination protein NusB [Shewanella amazonensis
           SB2B]
 gi|166215714|sp|A1S4C1|NUSB_SHEAM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119766657|gb|ABL99227.1| NusB antitermination factor [Shewanella amazonensis SB2B]
          Length = 134

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + L   D    R +      
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTE---QELDGVDVAYFRELFAGAAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ++D  L  +L   L       + +LR++V ++ +  DV    V++ A+E AK     
Sbjct: 58  KTAQLDEKLKPLLDRPLEEVSPVEKAILRLAVYELTFRKDVPYKVVINEAIELAKSF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|297526090|ref|YP_003668114.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255006|gb|ADI31215.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 383

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 24/239 (10%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267
            I  L  +  G+++ Q   A    ++        + D+ AAPGGKT+ LI      ++V 
Sbjct: 161 PIRDLEEYDLGLFYPQSLPAMTVSRILDPQPGELIFDMNAAPGGKTSHLIQLSRGRSRVV 220

Query: 268 ALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTI 322
           A + + ++  K+   L RL L     I+ MD+          +  D VL+D PC+  G  
Sbjct: 221 AFERNVKKALKVYSTLKRLRLLRNIIILPMDSRYVHLDLDASEKVDKVLIDPPCTGLGV- 279

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
              P +      +D V  + +QR+ L      V   GI+V+S C+L  +++EE +   +R
Sbjct: 280 --RPKIEIDIKGEDTVVLSKYQRQFLNAASMIVARKGIIVYSTCTLTWEENEENIIYAVR 337

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              + +E + L    +        +           +  +   +   M GFF   LRR 
Sbjct: 338 K--LGLETIDLGKIPYADKIYYRDI-----------IAYRFSPLGYDMPGFFVAVLRRK 383


>gi|168028404|ref|XP_001766718.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682150|gb|EDQ68571.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 101/262 (38%), Gaps = 43/262 (16%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
            +   P    G   +Q  ++ +P Q      +  VLD CAAPG KT  L   +    K+T
Sbjct: 199 DLHKHPLVLNGSIVLQGKASCMPAQALSPACDWEVLDACAAPGNKTVHLAALMAGRGKIT 258

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF------------------DYCPKKLFDA 309
           A +++++R ++L+  +         I E D                              
Sbjct: 259 ACEINEKRAQRLQETVRLTGATNFQIAETDFPELDVDVTVRQQDFLTIDPTLPEFTKVRG 318

Query: 310 VLVDAPCSSTGTIRRHPDVL---------WTRDTDDIVKSACFQRKLLLQGISF--VKPG 358
           +L+D  CS +GT  +  D L           ++ D I + A FQ   LL  +SF  ++  
Sbjct: 319 ILLDPSCSGSGTTVQRLDHLLPSAGTDKNDDQEKDRIEQLARFQETALLHALSFPSLEK- 377

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418
             +V+S CS+ ++++E+VV  VL  +      +      W    + +    +  IR    
Sbjct: 378 --LVYSTCSIHQRENEDVVLAVLPHAKEKGFELSNPFPSWPHRGLPVFEGADLLIRT--- 432

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
                D +   MDGFF     R
Sbjct: 433 -----DALRDKMDGFFVALFVR 449


>gi|326475252|gb|EGD99261.1| methyltransferase [Trichophyton tonsurans CBS 112818]
          Length = 854

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 60/238 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310
            A D   +R   L   + RL+     +   DA  Y   K                 FD +
Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGHPAKNRYLKFDRI 299

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           + D PCS  GT R++ ++    +  + +     Q ++L + +  +K GG VV+S CS++ 
Sbjct: 300 IADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359

Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMA-----------------MALSPEG 411
            ++E ++  V+        VE+V   +   +                       A + E 
Sbjct: 360 IENEAIISHVIDRCGGSSKVEIVDCENQLPELKRRPGLTTWKIMDKTGRIYENWAEAEEE 419

Query: 412 WIRITP---------------------DMLEKIDGVSSGMDGFFAVALRR----LIQP 444
             ++ P                         ++        GFF   L +     ++P
Sbjct: 420 VRKLNPAASRLVEGMFPPSRDADVGDLTRCMRVYPHMQDTGGFFITVLEKKREIKVKP 477


>gi|83648594|ref|YP_437029.1| transcription antitermination protein NusB [Hahella chejuensis KCTC
           2396]
 gi|119390775|sp|Q2S9S0|NUSB_HAHCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83636637|gb|ABC32604.1| transcription antitermination factor NusB [Hahella chejuensis KCTC
           2396]
          Length = 149

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+    AR ++   L        S++ +      D+  + +   D+ L +A++      +
Sbjct: 5   MEKRRAARKLALQALYQWRVAGASISQIEAEFAVDNDLQQV---DRDLFKAVLYGVPSSV 61

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
             +DA+L   +   L         L+R+   ++   ++V    V++ AVE AK+      
Sbjct: 62  SELDALLQPFVDRKLTDVDPVELSLIRMGAFELRSRIEVPYRVVINEAVELAKQFGGTDG 121

Query: 120 FA 121
             
Sbjct: 122 HK 123


>gi|195441370|ref|XP_002068484.1| GK20395 [Drosophila willistoni]
 gi|194164569|gb|EDW79470.1| GK20395 [Drosophila willistoni]
          Length = 457

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 13/212 (6%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268
           + SL   ++    +Q+  + + V++        VLD+CAAPG KT+ +   +     + A
Sbjct: 205 VPSLGDLSDAYGLLQNLPSMVCVRVLNPQPGDRVLDMCAAPGNKTSHIAELMRDQGVLVA 264

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDII--------EMDAFDYCPKKL--FDAVLVDAPCSS 318
           LD SK R++ ++  +         +           D  +  P     FD +L+DAPCS 
Sbjct: 265 LDNSKSRIKAMQSRIGHYKCIQSHVFDSTKALAEHNDQHNDPPFSSASFDRILLDAPCSG 324

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G   +       +   D+      QR+L  Q +  ++PGG +V+S C++ + + EE+V+
Sbjct: 325 IGNRPQLSCASQLKTAKDLKSYPNIQRRLFGQAVHLLRPGGTLVYSTCTVTEAECEEIVE 384

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
             LR  P    L  +       + +      +
Sbjct: 385 WALRKFPEIHLLDAVPRLGHSGLSLPNFDQDQ 416


>gi|311693386|gb|ADP96259.1| transcription antitermination protein NusB [marine bacterium HP15]
          Length = 158

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L      + +++ +      D+    +S+ D +  R ++    R    +D +
Sbjct: 25  ARALAMQGLYQRHFSKTAISDIEAEFMVDN---DMSKVDLLYFRDLLRGVHREQGELDKL 81

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           ++  L   +         ++R+   ++ + LDV    V++  +E AKR        
Sbjct: 82  IEPFLDRPIKEVDPVELAIVRLGAYELKHRLDVPYKVVINEGIEMAKRFGGTEGHK 137


>gi|296333411|ref|ZP_06875864.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675083|ref|YP_003866755.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296149609|gb|EFG90505.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413327|gb|ADM38446.1| transcription antitermination protein NusB [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 131

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I++   ++    +                +V+  L   
Sbjct: 1   MKRRT-AREKALQALFQIDVSDIAVNEAIEHALDEEKTD-------PFFEQLVHGVLEHQ 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            ++D ++   L    L R     + +LR++  ++ Y  D+     ++ A+E AKR   + 
Sbjct: 53  VQLDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRF-GDD 111

Query: 119 HFAKLVNSILRR 130
              K VN +L  
Sbjct: 112 KATKFVNGVLSN 123


>gi|212703679|ref|ZP_03311807.1| hypothetical protein DESPIG_01725 [Desulfovibrio piger ATCC 29098]
 gi|212672912|gb|EEB33395.1| hypothetical protein DESPIG_01725 [Desulfovibrio piger ATCC 29098]
          Length = 276

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 16/259 (6%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           +    ++           RL   P  + S      G  ++QD S+ +P          +V
Sbjct: 8   LRAQGYEFEPEPFSPFCRRLLCEPRPLGSSLAAFFGYIYIQDRSSMLPPLALAPRQGEAV 67

Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD+CA+PG KT  L         V   ++S+ RL  LR NL   +L        +     
Sbjct: 68  LDMCASPGSKTGFLGQLTGPEGFVLGNELSRARLATLRANLHACNLPHVGTCSYEGQALP 127

Query: 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                +DA+ +D PCS  GT+ ++P VL     D +      Q+ LL      ++PGG V
Sbjct: 128 LTPGTWDAIQLDPPCSGWGTVEKNPQVLKLWQGDKLKGLVGLQQLLLAHAARLLRPGGRV 187

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFS C+ +  ++E  V+         + LV  +   ++          EG +R+      
Sbjct: 188 VFSTCTTNDDENEAQVRFA----EEELGLVREHLTPFEGFVWEQRPGGEGTLRV------ 237

Query: 422 KIDGVSSGMDGFFAVALRR 440
             DG  S   GF+   LR+
Sbjct: 238 --DGERSAAQGFYVALLRK 254


>gi|153208973|ref|ZP_01947179.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165924151|ref|ZP_02219983.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           334]
 gi|212219014|ref|YP_002305801.1| transcription antitermination protein NusB [Coxiella burnetii
           CbuK_Q154]
 gi|238055349|sp|B6J8Q7|NUSB_COXB1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120575573|gb|EAX32197.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165916410|gb|EDR35014.1| transcription antitermination factor NusB [Coxiella burnetii RSA
           334]
 gi|212013276|gb|ACJ20656.1| utilization substance protein B [Coxiella burnetii CbuK_Q154]
          Length = 138

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K+  NAR  +   L            L+     +     LS  +    + +V  T++ + 
Sbjct: 4   KTRHNARRYALQALYQWFFCETKPDALISQFMEEH---DLSDTEVAYFKEVVTGTIQHVA 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            ID ++   L   +         +LR+S+ ++L+  +V    V+D A+E  K        
Sbjct: 61  IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120

Query: 121 A 121
            
Sbjct: 121 K 121


>gi|315056243|ref|XP_003177496.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS
           118893]
 gi|311339342|gb|EFQ98544.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS
           118893]
          Length = 866

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 76/246 (30%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310
            A D   +R   L   + RL+     +   DA  Y   K                 FD +
Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGQPAKNRYLKFDRI 299

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT R++ ++    +  + +     Q ++L + +  +K GG VV+S CS++ 
Sbjct: 300 LADVPCSGDGTTRKNFNLWKDWNPANGIGLFVTQARILFRALQMLKVGGRVVYSTCSMNP 359

Query: 371 QDSEEVVQKV---------------------LRSSPIP------------VELVPLNSAY 397
            ++E ++  V                     L+  P               E  P     
Sbjct: 360 IENEAIIAHVIDRCGGSSKVEIVNCEKELPELKRRPGLTTWKIMDKTGRIYENWPEAEEE 419

Query: 398 WKSIDMAMALSPEG---------------WIRITPDMLEKIDGVSSGMDGFFAVALRR-- 440
            + ++ A +   EG                +R+ P M +          GFF   L +  
Sbjct: 420 VRKLNPAASRLVEGMFPPSGVADVGDLTRCMRVYPHMQD--------TGGFFITVLEKKR 471

Query: 441 --LIQP 444
              ++P
Sbjct: 472 EIKVKP 477


>gi|157960994|ref|YP_001501028.1| transcription antitermination protein NusB [Shewanella pealeana
           ATCC 700345]
 gi|189035906|sp|A8H1Q6|NUSB_SHEPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157845994|gb|ABV86493.1| NusB antitermination factor [Shewanella pealeana ATCC 700345]
          Length = 135

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + ++  D    R ++     
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QDVAGVDIAYFRELLGGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ++D ++   +   L       + ++R++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KKSQLDELITPFVTRPLDEVDPVEKAIVRIATYELTFRKDVPYKVAINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|302503310|ref|XP_003013615.1| hypothetical protein ARB_00062 [Arthroderma benhamiae CBS 112371]
 gi|291177180|gb|EFE32975.1| hypothetical protein ARB_00062 [Arthroderma benhamiae CBS 112371]
          Length = 854

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 77/238 (32%), Gaps = 60/238 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310
            A D   +R   L   + RL+     +   DA  Y   K                 FD +
Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGQPAKNRYLKFDRI 299

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L D PCS  GT R++ ++    +  + +     Q ++L + +  +K GG VV+S CS++ 
Sbjct: 300 LADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359

Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALS---PEGWIRITPD------- 418
            ++E ++  V+        VE+V       +        +    +   RI  +       
Sbjct: 360 IENEAIISHVIDRCGGSSKVEIVDCEDQLPELKRRPGLTTWKIMDKTGRIYENWAEAEEE 419

Query: 419 ----------------------------MLEKIDGVSSGMDGFFAVALRR----LIQP 444
                                          ++        GFF   L +     ++P
Sbjct: 420 VRKLNSAASRLVEGMFPPSGDADVGDLTRCMRVYPHMQDTGGFFITVLEKKREIKVKP 477


>gi|220910233|ref|YP_002485544.1| Fmu (Sun) domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219866844|gb|ACL47183.1| Fmu (Sun) domain protein [Cyanothece sp. PCC 7425]
          Length = 323

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 96/279 (34%), Gaps = 14/279 (5%)

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV----SLP 216
             E       A  +P      + +          A   P            +       P
Sbjct: 18  RPEEQEQFIAALQTPPAFHPCILWTRPRPNPLPFAPEPPLDWQPDFVDRLPLGIRPGQDP 77

Query: 217 GFAEGVWWVQDASASIP-VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSK 273
              +G ++  D S+      L        VLDLCAAPGGK+           + + +V  
Sbjct: 78  LHEQGYYYCLDFSSVFAATPLLSLPPADRVLDLCAAPGGKSIFAWRALQPQLLLSNEVIG 137

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           +R+  L  NL R  + +  +  +D   +    + +   VLVDAPCS    + +   V   
Sbjct: 138 KRVGMLIANLKRCGVASVAVFSLDPQVWTAQAEAMAQVVLVDAPCSGQSLLAKGEKVPGC 197

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                I ++A  Q+++L      V PGG ++++ C+   +++E+V + +    P      
Sbjct: 198 FHPVTINQNANRQKRILANAAQVVAPGGYLLYTTCTFAPEENEQVCEWLGSKFPQF---- 253

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
               A           S     R+ P       G +  M
Sbjct: 254 -QPMAVPALAAYQSPFSSSPCYRLWPQSGLGAGGFTMLM 291


>gi|261328229|emb|CBH11206.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 935

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 97/290 (33%), Gaps = 76/290 (26%)

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----------------IVS 262
           E +   Q  S+ +PV L       +VLDLCA+PG KT+ +                    
Sbjct: 289 EHLISFQSTSSMLPVLLLDPRPGDAVLDLCASPGNKTSLVLDYVSSLRSTSLPSSNPHFH 348

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLFDAVLVDAPC 316
              + A DVS  R  +      R       + +                 ++ +LVDAPC
Sbjct: 349 HGCIVANDVSPPR-SRQLAQRLRNSSPTVAVTQFHGQSLPLETGASGGNKYNKILVDAPC 407

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G ++R             ++    Q +LL + ++    GG +V+S C+L+  + E V
Sbjct: 408 SGEGRMQRDAMSWRMWHPLRGLQFMQTQLRLLRRAVNLCSVGGHIVYSTCTLNPLEDEAV 467

Query: 377 VQKVLRSSPIPVELVP------------------------------LNSAYWKSIDMAMA 406
           +  VLR   + +   P                              L  A  K       
Sbjct: 468 IAAVLRDGAVELVEPPRELREKSGWRFSRGLRRWVVPSRAGGFLNTLAEAEAKGEGNPTT 527

Query: 407 LSP----EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           L+     EG            +R+ P         + G +GFF   LR+L
Sbjct: 528 LTDLFPYEGNEKIQSALESCCLRVMPHC-------NGGAEGFFVALLRKL 570


>gi|72389242|ref|XP_844916.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360023|gb|AAX80446.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801450|gb|AAZ11357.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 935

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 97/290 (33%), Gaps = 76/290 (26%)

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----------------IVS 262
           E +   Q  S+ +PV L       +VLDLCA+PG KT+ +                    
Sbjct: 289 EHLISFQSTSSMLPVLLLDPRPGDAVLDLCASPGNKTSLVLDYVSSLRSTSLPSSNPHFH 348

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLFDAVLVDAPC 316
              + A DVS  R  +      R       + +                 ++ +LVDAPC
Sbjct: 349 HGCIVANDVSPPR-SRQLAQRLRNSSPTVAVTQFHGQSLPLETGASGGNKYNKILVDAPC 407

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           S  G ++R             ++    Q +LL + ++    GG +V+S C+L+  + E V
Sbjct: 408 SGEGRMQRDAMSWRMWHPLRGLQFMQTQLRLLRRAVNLCSVGGHIVYSTCTLNPLEDEAV 467

Query: 377 VQKVLRSSPIPVELVP------------------------------LNSAYWKSIDMAMA 406
           +  VLR   + +   P                              L  A  K       
Sbjct: 468 IAAVLRDGAVELVEPPRELREKSGWRFSRGLRRWVVPSRAGGFLNTLAEAEAKGEGNPTT 527

Query: 407 LSP----EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           L+     EG            +R+ P         + G +GFF   LR+L
Sbjct: 528 LTDLFPYEGNEKIQSALESCCLRVMPHC-------NGGAEGFFVALLRKL 570


>gi|89068275|ref|ZP_01155685.1| NOL1/NOP2/sun family protein [Oceanicola granulosus HTCC2516]
 gi|89046192|gb|EAR52250.1| NOL1/NOP2/sun family protein [Oceanicola granulosus HTCC2516]
          Length = 377

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 127/441 (28%), Gaps = 75/441 (17%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             +L   +   + L       Y  + +      D+  +R +V           A +    
Sbjct: 1   MEVLDLWL-SGLPLEAAWQRWYRGARYAG--SSDRAAIRDLVY----------AAVRRRR 47

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            ++      +  + L +    +L  +  D   V      A     +   A          
Sbjct: 48  SAAALGGGAATGRGLILG---LLRAEGVDPEGVFTGTGHAPPPLTDAERAGP-------- 96

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
                      A    +P+W   R+E   G  R      A      + L V       A 
Sbjct: 97  ------GALTRAERLDVPDWLLLRIEAALGP-RTEDALAAMQVRADVHLRVNTRRADRAA 149

Query: 192 ----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
                     +          I +      +       EG+  +QDA++   V       
Sbjct: 150 LVARLVDAGLEAAPHGEVDTAITIAGDARKLARTGAVDEGLAELQDAASQAVVARLAERP 209

Query: 242 NLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
              VLD CA  GGK  A   +  A++ A D++  R+  L     R        I      
Sbjct: 210 AARVLDYCAGGGGKALAFADLLDAEIVAHDIAPARMADLPARAARAGQQ----IATRGTS 265

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD V  DAPCS +G+ RR P+  W      + +    Q  +L Q    V PGG 
Sbjct: 266 ELAGEAFDLVFCDAPCSGSGSWRRDPEGKWRLTPARLDELVAVQAGVLAQAHRLVAPGGR 325

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           + ++ CS+                          +     +           +R+ P  +
Sbjct: 326 LGYATCSVL--------------------AEENEAQAAAFLAAHAGWRQCDALRLVPGDV 365

Query: 421 EKIDGVSSGMDGFFAVALRRL 441
                     DGFF     R+
Sbjct: 366 ---------GDGFFLAVFERV 377


>gi|195348858|ref|XP_002040964.1| GM22476 [Drosophila sechellia]
 gi|194122474|gb|EDW44517.1| GM22476 [Drosophila sechellia]
          Length = 440

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 24/233 (10%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT+ +   +     V ALD S  R+  +   
Sbjct: 212 QNLPSIVCVRVLDPQPFERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 271

Query: 283 LDRLHLYAEDIIEMDAF---------------DYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           L         +                        P + FD +L+DAPCS  G   R   
Sbjct: 272 LGHYKCITAHVFNSTKAVAPDAPPAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 329

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
               +    +      QR+L  Q +  ++PGGI+V+S C++ + + E +V   L    + 
Sbjct: 330 SCSIKQAKVLSSYPHIQRQLFEQAVQLLRPGGILVYSTCTVTEDECECLVAWALGKF-VE 388

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + L      +                R+         G ++   GFF    ++
Sbjct: 389 LRLTDATPRWGGPGLSLPGFEASKS-RLL--QRFGPSGANADTVGFFIAKFQK 438


>gi|322700995|gb|EFY92747.1| methyltransferase (Ncl1), putative [Metarhizium acridum CQMa 102]
          Length = 826

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 57/233 (24%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVLVD 313
            A D   +R   L   L RL      +   DA  +                  FD +L D
Sbjct: 241 IANDSDYKRGHMLVHQLKRLSSPNLIVTNHDATQFPSLKLPSTDPTAKPTYLKFDRILAD 300

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  GT+R++ ++       + +     Q ++L++ +  +K GG VV+S CS++  ++
Sbjct: 301 VPCSGDGTLRKNANLWKDWQPGNALGLHATQIRILVRALQLLKVGGRVVYSTCSMNPVEN 360

Query: 374 EEVVQKVLRSS--PIPVELVPLN---SAYWKSIDMAMALSPEGWIRIT------------ 416
           E VV   +     P  VE++  +    A  +   +      +   R+             
Sbjct: 361 ESVVASAIERCGGPGNVEILDCSEQLPALVRRPGLRKWKIMDKSCRMWDTWEQVETFARE 420

Query: 417 ------PD---------------------MLEKIDGVSSGMDGFFAVALRRLI 442
                 P                         ++        GFF   L +  
Sbjct: 421 ENDGVVPGRVSQTMFPKLEGTECYDLPLERCMRVYPHLQDTGGFFITVLEKKT 473


>gi|121997687|ref|YP_001002474.1| NusB antitermination factor [Halorhodospira halophila SL1]
 gi|166215692|sp|A1WVG0|NUSB_HALHL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|121589092|gb|ABM61672.1| NusB antitermination factor [Halorhodospira halophila SL1]
          Length = 155

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 6/131 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR      L        S   +            L   D    R ++        
Sbjct: 8   KRRSRARSKLVQALYQYAVTGASAEDIERQFLA----AGLGDIDVAYFRELIYGVTDRAA 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D  L  +L   L +     + +LR+   ++   L+V    V+D +VE A+R   ++  
Sbjct: 64  ELDEQLSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQS- 122

Query: 121 AKLVNSILRRV 131
            + +N +L R 
Sbjct: 123 HRYINGVLDRF 133


>gi|304407046|ref|ZP_07388700.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
 gi|304344033|gb|EFM09873.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
          Length = 156

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS--------QRDQILVRAI 52
           MK  + AR ++   L  +    ++    +D+   ++  +            +     R +
Sbjct: 1   MKRRL-AREIAVQSLYQMEMNEVTAEEAVDMLMEEARQQDNEIGAHPAEAAKVNAFTRGL 59

Query: 53  VNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110
           V   +     ID +L   L    + R     +Q+LR++  +IL+  DV   A ++ A+E 
Sbjct: 60  VFGVIERKTAIDQMLQQYLTGWQVDRLSRVDRQILRLAAYEILFRDDVPPKAAINEAIEL 119

Query: 111 AKRDKENRHFAKLVNSILRR 130
           AK         K VN +L +
Sbjct: 120 AK-HFGTDESGKFVNGVLGK 138


>gi|17228503|ref|NP_485051.1| hypothetical protein alr1008 [Nostoc sp. PCC 7120]
 gi|17130354|dbj|BAB72965.1| alr1008 [Nostoc sp. PCC 7120]
          Length = 317

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 19/248 (7%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGK 255
                +    L E         +G ++  D S+     +      +   V D+CAAPGGK
Sbjct: 59  WQPKFVDRLHLGEKPGQHTLHHQGYFYCLDFSSVFAASILLTIPQSVSLVFDMCAAPGGK 118

Query: 256 TAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVL 311
           +           +   +V  +RL  L  NL R  +    I   D+  +        + V+
Sbjct: 119 SVFAWQALHPELIICNEVIGKRLGMLISNLKRCQISPSIIFNRDSSIFAENIPLSSNLVI 178

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           VDAPC+    + +            I KSA  Q++++      V P G + +  C+   +
Sbjct: 179 VDAPCTGQSLLAKGEKAPGCFHPTAINKSANRQKRIIANSAQIVAPQGYLAYMTCTYSPE 238

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E+V +  L   P   + V +N       +    L+     R+ P              
Sbjct: 239 ENEQVCEWFLSRFP-HFQAVEIN----HLQEYQSHLTNIPCYRLFPQDRLGA-------- 285

Query: 432 GFFAVALR 439
           G F    +
Sbjct: 286 GAFTALFK 293


>gi|154335302|ref|XP_001563891.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060920|emb|CAM37937.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1173

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 1/131 (0%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +D VLVDAPCS  G + R             ++    Q  LL + +   K GG VV++ C
Sbjct: 528 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRVVYATC 587

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-RITPDMLEKIDG 425
           +L+  ++E VV  VLR+    V L+       +           G +  +      +   
Sbjct: 588 TLNPLENEAVVAAVLRACGDAVALISPPRPLPRRTQSQSEEDDGGSVPPLHLTAGLRSWD 647

Query: 426 VSSGMDGFFAV 436
           V SG  GFF  
Sbjct: 648 VPSGTGGFFCS 658



 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 7/31 (22%)

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
             R+ P +       +   DGFF   L +  
Sbjct: 699 CRRVMPHL-------NGNTDGFFVAVLEKRA 722


>gi|158333255|ref|YP_001514427.1| nol1/nop2/sun family protein [Acaryochloris marina MBIC11017]
 gi|158303496|gb|ABW25113.1| nol1/nop2/sun family protein [Acaryochloris marina MBIC11017]
          Length = 312

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 92/266 (34%), Gaps = 11/266 (4%)

Query: 159 FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF 218
              +  + A+++       I        +    +++A+      +    + E        
Sbjct: 14  QQQQAFIQALTEPQPYSPCIAWIKGRSEKASFQRVDALPWQLPFVDRLAVGERPGKHDLH 73

Query: 219 AEGVWWVQDASASI--PVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKR 274
            +G ++  D S+                VLDLCAAPGGK   A   +    + + +V  +
Sbjct: 74  HQGAYYCLDFSSVFAATPLTVIRKKPKVVLDLCAAPGGKSLLAWRFLQPHLLVSNEVIGK 133

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTR 332
           R+  L  NL R  +    ++  D            D VLVDAPC+    + +        
Sbjct: 134 RVGMLISNLKRCQIAPVRVLSADPSVLAEAIPASADVVLVDAPCTGQSLLAKGESAPGCF 193

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
               I  +   QR++L      V PGG + +  C+  + ++E+V +   R  P       
Sbjct: 194 HPASIQHNVKRQRRILANASRLVVPGGYLAYMTCAFSEAENEQVCRWFTRRFPNF----- 248

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPD 418
                   +     L+     RI P 
Sbjct: 249 EPQTVDALLAFQSHLTDLPCYRIWPQ 274


>gi|332017885|gb|EGI58545.1| Putative methyltransferase NSUN6 [Acromyrmex echinatior]
          Length = 461

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 31/243 (12%)

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKL 279
                +Q+  + +   +       ++LD+CAAPG KT  + +       +   ++ L K+
Sbjct: 226 RPHALLQNLPSIVCSLVLNPQPGETILDMCAAPGNKTTHISLLMKGQGTIIALEKNLGKV 285

Query: 280 RCNLDRL-HLYAEDIIEMD-----------------AFDYCPKKLFDAVLVDAPCSSTGT 321
           +   ++  +     I   D                       +  FD +L+D PCS+ G 
Sbjct: 286 KRFKEKCENEKNIKIFCCDATKAIIEREHSFVREHTDGPPFEENYFDRILLDTPCSALG- 344

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
             + P +  T     +      QR L    +  +K  G +V+S C++   ++E ++   L
Sbjct: 345 --QRPQLYNTITPAQLHSYVPLQRNLFSTAVRLLKLKGTLVYSTCTITIAENEGIIAWAL 402

Query: 382 RSSP----IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +  P      V+       Y     +   L+ E   ++         G  S   GFF   
Sbjct: 403 KQFPKLQLQSVKDRIKTDKYGTPGYIIDGLTNENAKKV------CRFGPESDSIGFFIAC 456

Query: 438 LRR 440
           L++
Sbjct: 457 LKK 459


>gi|332225150|ref|XP_003261743.1| PREDICTED: putative methyltransferase NSUN3 [Nomascus leucogenys]
          Length = 340

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 105/291 (36%), Gaps = 22/291 (7%)

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220
                         +L     ++ +       +          L  +   +P        
Sbjct: 50  WQYAVLLNRFNYPFELEKDLHLKGYHTLFQGSLPNYPKSMKCYLSRTPGRIPSERHQIGN 109

Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLE 277
              +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL 
Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLR 169

Query: 278 K------LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI-RRHPDVLW 330
                         +++     ++         ++FD VLVDAPCS+  +          
Sbjct: 170 WLRQTLESFIPQPLINVINVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKA 229

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           +R           Q +LL   I  ++PGGI+V+S C+L K ++++V+ ++L S    + +
Sbjct: 230 SRRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHSNIMPM 289

Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                A   S D   A + +   + + PD  +            +   L++
Sbjct: 290 DIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333


>gi|73537001|ref|XP_847919.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438835|emb|CBZ12595.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 638

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 98/271 (36%), Gaps = 52/271 (19%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-------IVSGAKVTALDVSK 273
           G    Q+  + +P  L    + + VLD+CAAPG KT+Q+             V A DV  
Sbjct: 130 GYLTRQETVSMLPPLLLQVESGMRVLDMCAAPGSKTSQVLELLLAGESGRGVVVANDVKA 189

Query: 274 RRLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
            RL+ L    +R      HL   +            + FD VL D  CS  GT+R+  D+
Sbjct: 190 SRLDVLHHQTNRAAGAHLHLIITNTDATRFPLLPLAERFDRVLCDVMCSGDGTLRKSIDM 249

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
               D+         Q ++LL+G++  K GGIVV+S CSL+  + E VV   L  +    
Sbjct: 250 WPRWDSLQGANLHHTQMRVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTEGTF 309

Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420
           EL+     +                                  A +     +  P M   
Sbjct: 310 ELIDPTPLHHGLCASPGMTSWTVTTRDLTTALRNYEDAKAFMEAQTDRRTFQYAPTMFAN 369

Query: 421 ------------EKIDGVSSGMDGFFAVALR 439
                        +I   +    GFF  ALR
Sbjct: 370 TELLVDQHIERTRRILPHTQDTGGFFVAALR 400


>gi|225156170|ref|ZP_03724650.1| tRNA and rRNA cytosine-C5-methylase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803060|gb|EEG21303.1| tRNA and rRNA cytosine-C5-methylase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 434

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 120/421 (28%), Gaps = 40/421 (9%)

Query: 28  LLDLEYGD-SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL-QQL 85
           + D       + + LS  ++     +    L    RI           +          L
Sbjct: 39  VFDDWIRGLFSKKGLSSHERH----LYYAALMMWLRIRNWC-----RPVLELDPDTGLAL 89

Query: 86  LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA-- 143
           + +++            V       A         A  + S     +         +A  
Sbjct: 90  ICLAL--------PPGQV---RSALASDLALPESEAGRLPSPDALATVAPDFAPFNLAKL 138

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             S   +       +   +                    +  +E          L    +
Sbjct: 139 MPSWFTDQALWTFADDTLERWFTPTPMWLRCRPGWRDIARDMMEKEGQPTQVHPLIPDAL 198

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG 263
            L      + +L  F  G+  VQD  A   + +    +    L+  A  G     L    
Sbjct: 199 GLPPDTL-VSNLRAFMGGLCEVQDIGAQAIIAMSEPQSGEVWLNTFAGLGRHARALADLV 257

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
            +   +D +  R  +L   +     +A   I++          +D V   A  S +G +R
Sbjct: 258 GETGRVDAADTRQNELYSLIPGNDPHARKNIQIVDTKGGGGGAYDGVFAFALSSCSGLLR 317

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
             P +L       +      Q  LL +    V+PGG +V++  S+   ++  VV+    +
Sbjct: 318 HRPWLLHQMSPSTLNDFVGAQHDLLRESAKQVRPGGRLVYAVTSVCLAETNNVVELFAET 377

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            P    + P         D    L+  GW RI P  L+         D  +    RR  +
Sbjct: 378 HPQFEVVKPA------LADRLARLAGLGW-RIHPADLDG--------DARYMAVFRRRAK 422

Query: 444 P 444
           P
Sbjct: 423 P 423


>gi|224009672|ref|XP_002293794.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970466|gb|EED88803.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 470

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 101/280 (36%), Gaps = 66/280 (23%)

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA------------ 257
           +SI S+ G+  G + VQDA +   VQ         VLD CA  GGKT             
Sbjct: 209 KSIWSMRGWQNGYFEVQDAGSQCIVQSLEVSPGDYVLDYCAGNGGKTFGLASVLMDTNRL 268

Query: 258 ------QLIVSGAKVTALDVSKRRLEKLRCNLDRLH------------------------ 287
                       + + A DV + RL ++  +L R+                         
Sbjct: 269 RRDDPDYSDEITSHIVAHDVVEERLRQVEGSLSRVGFEDGDPSDLSTITSYSAGCEASND 328

Query: 288 ----LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS-AC 342
               L     I            FDAVLVDAPCSSTG +RR P   W    + ++     
Sbjct: 329 GSRRLRCSIQIASSTEIESKSSHFDAVLVDAPCSSTGVLRRRPSQRWDIRENQVLDVLPK 388

Query: 343 FQRKLLLQGISFVKPGG-IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
            Q ++L +  SFVK GG  +V+S CS+ K+++E V +                 A     
Sbjct: 389 LQLEILQRAASFVKEGGGKLVYSTCSMLKEENESVCRLF---------EESDAYAEHGFQ 439

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                      + + P         +S  DGFF    +RL
Sbjct: 440 RWGFDNRETNSVTLLP---------TSNSDGFFIARWKRL 470


>gi|126460774|ref|YP_001057052.1| PUA domain-containing protein [Pyrobaculum calidifontis JCM 11548]
 gi|126250495|gb|ABO09586.1| PUA domain containing protein [Pyrobaculum calidifontis JCM 11548]
          Length = 375

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 95/234 (40%), Gaps = 31/234 (13%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271
           I  LP +AEG+ + Q   A     +   L     +DL AAPGGK   L   G +V A+D 
Sbjct: 167 IRDLPEYAEGLIYSQSLPAIAVGHVAKRLGVEKAVDLNAAPGGKCTHLAQLGMRVFAVDR 226

Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           S  ++ +LR  L RL L A  D++  D+       P+      LVD PC+  G     P 
Sbjct: 227 SWSKISRLREELKRLGLEAQVDVLLHDSRYLDRDFPRLRAGLALVDPPCTDIGV---RPK 283

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +            A +Q + L      +K    V++S C+L   ++EEVV   L+S    
Sbjct: 284 IYHRVTYKAAKTLAQYQLQFLKTA---LKIADYVIYSTCTLTYVENEEVV---LKSRAQT 337

Query: 388 VEL-VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + L +P+ +  W           E   R  P +            GFF   L +
Sbjct: 338 LHLDLPIGAPGW---------GCETCRRFLPHI--------HNTPGFFLALLSK 374


>gi|322706721|gb|EFY98301.1| methyltransferase (Ncl1) [Metarhizium anisopliae ARSEF 23]
          Length = 827

 Score = 97.7 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 57/233 (24%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVLVD 313
            A D   +R   L   L RL      +   DA  +                  FD +L D
Sbjct: 241 IANDSDYKRGHMLVHQLKRLSSPNLIVTNHDATQFPSLKLPSTDPTAKPTYLKFDRILAD 300

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            PCS  GT+R++ ++       + +     Q ++L++ +  +K GG VV+S CS++  ++
Sbjct: 301 VPCSGDGTLRKNANLWKDWQPGNALGLHTTQIRILVRALQLLKVGGRVVYSTCSMNPVEN 360

Query: 374 EEVVQKVLRSS--PIPVELVPLN---SAYWKSIDMAMALSPEGWIRIT------------ 416
           E V+   +     P  VE++  +    A  +   M      +   R+             
Sbjct: 361 ESVIASAIERCGGPGNVEILDCSEQLPALVRRPGMRKWKIMDKSCRMWDTWEQVETFARE 420

Query: 417 ------PD---------------------MLEKIDGVSSGMDGFFAVALRRLI 442
                 P                         ++        GFF   L +  
Sbjct: 421 ENDGVVPGRVSQTMFPKLEGTECYDLPLERCMRVYPHLQDTGGFFITVLEKKT 473


>gi|297843456|ref|XP_002889609.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335451|gb|EFH65868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 599

 Score = 97.7 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P   FD VL+DAPCS+ G   R            +     +QRK+L Q +  V+ GGI+
Sbjct: 454 FPPDSFDRVLLDAPCSALGL--RPRLFAGLETVISLRDHGRYQRKMLDQAVQLVRVGGIL 511

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--PD- 418
           V+S C+++  ++E VV+  L      + L P +        +     P+G+I     P  
Sbjct: 512 VYSTCTINPSENEAVVRYALDKY-RFLSLAPQHPRIGGPGLVGRCEFPDGYIEEWLKPGE 570

Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438
              + +          GFF    
Sbjct: 571 EEMVQKFDPSSELDTIGFFIAKF 593


>gi|322490804|emb|CBZ26068.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 762

 Score = 97.7 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 99/295 (33%), Gaps = 74/295 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------------------I 260
              Q+  + IP  L     N   LD+CA+PG KTAQ+                       
Sbjct: 180 ISRQEEVSMIPPFLLDIQPNDVCLDMCASPGSKTAQMLVALGRHKVVPFDSDASPFPFEY 239

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK------------- 305
            S   V A ++  +R   L   + RL L          DA  +                 
Sbjct: 240 DSDGLVIANELDAKRANMLVHQVKRLRLLFPFTLFTNHDARYFPEMSLQPQPVDAEKAAA 299

Query: 306 -----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD +L D  CS  GT+R+ P +       + +     Q ++ L+    ++ GG 
Sbjct: 300 GAEVLRFDKILCDVVCSGDGTLRKAPHIFKLWSPKEAINLQKLQIEIALRACHLLRVGGR 359

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-------------AL 407
           +V+S CSL+  ++E VV +++  +   + LV   +   K +                   
Sbjct: 360 LVYSTCSLNPVENEAVVAQIVHRTRGAMRLVDARALLPKLVCAPGMTKWTVTDAKGRVFP 419

Query: 408 SPEGWIR--ITPDMLE-----------------KIDGVSSGMDGFFAVALRRLIQ 443
           +PEG +   + P                     ++        GFF   L ++ +
Sbjct: 420 APEGNMHEALFPPHTPGGYSSAAVDALDLSLCMRLFPTHCKGGGFFVAVLDKVSE 474


>gi|239607185|gb|EEQ84172.1| methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 871

 Score = 97.7 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 60/239 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------------KKLFDA 309
            A D   +R   L   + RL+     +   DA  Y                      FD 
Sbjct: 237 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSLKLPSLPPPEGKPVRNRYLKFDR 296

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L + +  +K GG VV+S CS++
Sbjct: 297 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQCRILTRALQMLKVGGRVVYSTCSMN 356

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT-------- 416
             ++E V+  V+     P  V ++  ++      +S  ++     +   R          
Sbjct: 357 PVENEAVIASVIDRCGGPSKVHIMDCSNELPALKRSPGLSSWTIMDKQGRTWSSWKDVEE 416

Query: 417 -----------------P---------DMLEKIDGVSSGMDGFFAVALRRL----IQPK 445
                            P             ++         FF   L ++     +P+
Sbjct: 417 AVSQGDDTLNRIVEGMFPPLKEEGIDLSRCMRVYPHQQDTGAFFITVLEKMSDIKARPE 475


>gi|52080965|ref|YP_079756.1| transcription antitermination protein NusB [Bacillus licheniformis
           ATCC 14580]
 gi|52786341|ref|YP_092170.1| transcription antitermination protein NusB [Bacillus licheniformis
           ATCC 14580]
 gi|319645077|ref|ZP_07999310.1| N utilization substance protein B [Bacillus sp. BT1B_CT2]
 gi|81609065|sp|Q65HI7|NUSB_BACLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52004176|gb|AAU24118.1| NusB [Bacillus licheniformis ATCC 14580]
 gi|52348843|gb|AAU41477.1| NusB [Bacillus licheniformis ATCC 14580]
 gi|317392886|gb|EFV73680.1| N utilization substance protein B [Bacillus sp. BT1B_CT2]
          Length = 129

 Score = 97.7 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I     +                      +V   L   
Sbjct: 1   MKRRT-AREKALQSLFQIDVSDIEPNEAMQHALDGQESD-------AFFEQLVYGVLENK 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            +ID ++   L    L R     + +LR+S  ++++L D+     ++ A+E AK+   + 
Sbjct: 53  EKIDEMIKRHLVNWKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELAKQF-GDD 111

Query: 119 HFAKLVNSILRR 130
             AK VN +L  
Sbjct: 112 KSAKFVNGVLSN 123


>gi|194222952|ref|XP_001503018.2| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 3 [Equus
           caballus]
          Length = 587

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 112/308 (36%), Gaps = 24/308 (7%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207
           +P+   + +       +   + +    P    L     +  +       +          
Sbjct: 285 LPDLRDQDILTSPCCWQYAVLLNRFNYPFN--LEEALRLRGYRTVFQGSLPHCPKSMKCY 342

Query: 208 LPESIVSLPGFAE-----GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262
           L  +   +P           +++ +A++ +PV      +   VLDLCAAPGGK+  L+  
Sbjct: 343 LSTTAGRMPSERHQVGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQC 402

Query: 263 GAKV--TALDVSKRRLEKLRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314
                    +    RL+ L       + +  +    + + D  D    +   FD VLVDA
Sbjct: 403 ADPGYLHCNEYDHLRLKWLMQTLESFIPQPLVNGIKVSQSDGRDVGDAQPETFDKVLVDA 462

Query: 315 PCSSTGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           PCS+  +                       QR LL   I  ++PGG++V+S C+L + ++
Sbjct: 463 PCSNDRSWLFSPDAQKAACRISQRRSLPLLQRGLLRSAIKALRPGGLLVYSTCTLSRAEN 522

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDG 432
           ++V+  VL +    + +     A   S D + A + +   + + PD              
Sbjct: 523 QDVINDVLNTHSNVIPVDITEMARTCSQDFSFAPTGQECGLLVIPDKGRAWGP------- 575

Query: 433 FFAVALRR 440
            +   L++
Sbjct: 576 MYVAKLKK 583


>gi|186685972|ref|YP_001869168.1| Fmu (Sun) domain-containing protein [Nostoc punctiforme PCC 73102]
 gi|186468424|gb|ACC84225.1| Fmu (Sun) domain protein [Nostoc punctiforme PCC 73102]
          Length = 323

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 95/277 (34%), Gaps = 14/277 (5%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--- 208
              R       E+   I        ++   +    +     L          +  +    
Sbjct: 10  KVSRRLFANLDEQEKFIEALMNPQPFLPSILWCKEKLNISPLPVETPIYWQPQFTDRLSL 69

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV--SGA 264
            E     P   +G ++  D S+            +   V D+CAAPGGK+          
Sbjct: 70  GEKPGQHPLHQQGYFYCLDFSSIFAATTLLAIPQSVRLVFDMCAAPGGKSIFAWKALQPE 129

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTI 322
            + + +V  +RL  L  NL R  +    ++  D+  +     +  + V+VDAPC+    +
Sbjct: 130 LLISNEVIGKRLGMLISNLKRCQISPSAVVNRDSSIFAEMFPYFSNLVIVDAPCTGQSLL 189

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            +            I KSA  Q++++      V   G + +  C+   +++E+V +  L 
Sbjct: 190 AKGEKAPGCFHPTAINKSANRQKRIIANSAKLVSSQGYLAYMTCTYSPEENEQVCEWFLE 249

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
             P    +   N   ++S      L+     R+ P  
Sbjct: 250 RFPQFQAMEISNLTKYQS-----HLTTIPCYRMFPQD 281


>gi|327351145|gb|EGE80002.1| methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 871

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 60/239 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------------KKLFDA 309
            A D   +R   L   + RL+     +   DA  Y                      FD 
Sbjct: 237 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSLKLPSLPPPEGKPVRNRYLKFDR 296

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L + +  +K GG VV+S CS++
Sbjct: 297 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQCRILTRALQMLKVGGRVVYSTCSMN 356

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT-------- 416
             ++E V+  V+     P  V ++  ++      +S  ++     +   R          
Sbjct: 357 PVENEAVIASVIDRCGGPSKVHIMDCSNELPALKRSPGLSSWTIMDKQGRTWSSWKDVEE 416

Query: 417 -----------------P---------DMLEKIDGVSSGMDGFFAVALRRL----IQPK 445
                            P             ++         FF   L ++     +P+
Sbjct: 417 AVSQGDDTLNRIVEGMFPPLKEEGIDLSRCMRVYPHQQDTGAFFITVLEKMSDIKARPE 475


>gi|209363834|ref|YP_001423988.2| transcription antitermination protein NusB [Coxiella burnetii
           Dugway 5J108-111]
 gi|207081767|gb|ABS77377.2| N utilization substance protein B [Coxiella burnetii Dugway
           5J108-111]
          Length = 179

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K+  NAR  +   L            L+     +     LS  D    + +V  T++ + 
Sbjct: 45  KTRHNARRYALQALYQWFFCETKPDALISQFMEEH---DLSDTDVAYFKEVVTGTIQHVA 101

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            ID ++   L   +         +LR+S+ ++L+  +V    V+D A+E  K        
Sbjct: 102 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 161

Query: 121 A 121
            
Sbjct: 162 K 162


>gi|330834473|ref|YP_004409201.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566612|gb|AEB94717.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 345

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 42/253 (16%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L              +   I  L     G+   Q  ++    ++        ++D+ A P
Sbjct: 129 LKRDDWTVQVTESIYVSPKISELDVIKSGLAISQGKASMYVARIVDPKPGERIVDMNAFP 188

Query: 253 GGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLF 307
           GGK   +        +   D S++++EKLR  L+ L +    +   D+         K  
Sbjct: 189 GGKLTHIYQLEPKVNLVGFDHSQKKIEKLRSKLELLKMP-IRVYVADSRYLDRDLGIKDV 247

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           D V++D PCS+ G     P +   +D +DI+  + +Q++ +    + +K GG +V+S C+
Sbjct: 248 DKVIIDPPCSALGV---RPKLYDKKDKNDILNFSSYQKQFINSAWAILKRGGTLVYSTCT 304

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
              Q++EEV+                                E  +R  P++        
Sbjct: 305 TTLQENEEVISD-------------------------PRFEIEFSLRFHPNV-------- 331

Query: 428 SGMDGFFAVALRR 440
             + GFF   L +
Sbjct: 332 HDITGFFIAKLIK 344


>gi|42561755|ref|NP_172143.3| NOL1/NOP2/sun family protein [Arabidopsis thaliana]
 gi|30102680|gb|AAP21258.1| At1g06560 [Arabidopsis thaliana]
 gi|110743735|dbj|BAE99704.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189884|gb|AEE28005.1| NOL1/NOP2/sun-like protein [Arabidopsis thaliana]
          Length = 599

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P   FD VL+DAPCS+ G   R            +     +QRK+L Q +  V+ GGI+
Sbjct: 454 FPPNSFDRVLLDAPCSALGL--RPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGIL 511

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--PD- 418
           V+S C+++  ++E VV+  L      + L P +        +     P+G+I     P  
Sbjct: 512 VYSTCTINPSENEAVVRYALDKY-RFLSLAPQHPRIGGPGLVGRCEFPDGYIEEWLKPGE 570

Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438
              + +          GFF    
Sbjct: 571 EELVQKFDPSSELDTIGFFIAKF 593


>gi|6692692|gb|AAF24826.1|AC007592_19 F12K11.10 [Arabidopsis thaliana]
          Length = 365

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P   FD VL+DAPCS+ G   R            +     +QRK+L Q +  V+ GGI+
Sbjct: 220 FPPNSFDRVLLDAPCSALGL--RPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGIL 277

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--PD- 418
           V+S C+++  ++E VV+  L      + L P +        +     P+G+I     P  
Sbjct: 278 VYSTCTINPSENEAVVRYALDKY-RFLSLAPQHPRIGGPGLVGRCEFPDGYIEEWLKPGE 336

Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438
              + +          GFF    
Sbjct: 337 EELVQKFDPSSELDTIGFFIAKF 359


>gi|83590364|ref|YP_430373.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
 gi|119390785|sp|Q2RIA9|NUSB_MOOTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83573278|gb|ABC19830.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
          Length = 145

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +   L  +     S    L+    +     L  R     R +V  T+     I
Sbjct: 3   RRAARAKALQALFAIDVGGTSPDMALEQVLEEG---ELPPRAMTFTRELVEGTMAKRDAI 59

Query: 64  DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           DA++    +   L R     + +LR+++ ++ Y        V++ A+E AK    N    
Sbjct: 60  DAIIRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFN-NEEAG 118

Query: 122 KLVNSILRR 130
           + VN +L  
Sbjct: 119 RFVNGLLDN 127


>gi|149378278|ref|ZP_01895989.1| NusB [Marinobacter algicola DG893]
 gi|149357443|gb|EDM45954.1| NusB [Marinobacter algicola DG893]
          Length = 158

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L      + S+T +      D+    +S+ D    R ++    R    +D +
Sbjct: 25  ARALAMQGLYQRHFSKSSITDIESEFIVDN---DMSKVDAAYFRDLLRGVHREQAELDRL 81

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           L+  L   +         ++R+   ++ + LDV    V++  +E AKR        
Sbjct: 82  LEPFLDRPIHEVDAIELAIVRLGAYELKHRLDVPYKVVINEGIEMAKRFGGTEGHK 137


>gi|308502930|ref|XP_003113649.1| hypothetical protein CRE_26337 [Caenorhabditis remanei]
 gi|308263608|gb|EFP07561.1| hypothetical protein CRE_26337 [Caenorhabditis remanei]
          Length = 732

 Score = 97.3 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 134/414 (32%), Gaps = 57/414 (13%)

Query: 48  LVRAIVNVTL------RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADY 101
           L+  ++  TL      R    + +V+       +   +  L+             D    
Sbjct: 352 LLYVLMYETLVGSGLNRCSQELKSVISRRSQK-IKDVEKELEA------------DGRGI 398

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161
             +  A E AK+           N           +++          +W  E       
Sbjct: 399 KSIKEAEEGAKKVLLPG------NKSNHIEYSFLFQIIIPRYARINTLKWTAEEAMKTLE 452

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF--- 218
            E       A +      +           K + + +      L     +I +   +   
Sbjct: 453 TEEWKLQGSASVENFAEVVGNM--------KEDEIYVDPHVESLLIFAPNIQNFHEYWMV 504

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRR 275
            +    +QD ++ +P  L        VLD CAAPG KT+    ++ +  KV A+D +  R
Sbjct: 505 EQRYLILQDKASCLPAFLLNPRPGSQVLDTCAAPGMKTSHAAAIMDNQGKVWAMDRAADR 564

Query: 276 LEKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW- 330
           +  ++  LD   +        D                 ++D PCS +G ++R  ++   
Sbjct: 565 VAVMKQLLDGSKVAIASAFCGDFLKTDITDKKFSKVKFAIIDPPCSGSGIVKRMDEITGG 624

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPG-GIVVFSNCSLDKQDSEEVVQKVLRSS--PIP 387
             + + + K    Q  +L   +    PG    V+S CS+ ++++E+V+ +VL  +     
Sbjct: 625 NAEKERLEKLKNLQAMILKHALKL--PGLKRAVYSTCSIHEEENEQVIDEVLLDTYVRQN 682

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             L       W    +      E  +R  P +           +GFF     R+
Sbjct: 683 FVLKKDVLPEWTHRGLKTYEVGEHCLRADPKVTL--------TNGFFVAVFERV 728


>gi|294141965|ref|YP_003557943.1| N utilization substance protein B [Shewanella violacea DSS12]
 gi|293328434|dbj|BAJ03165.1| N utilization substance protein B [Shewanella violacea DSS12]
          Length = 134

 Score = 97.3 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + +   D    R +   T  
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QKIDGIDVAYFRELFTGTAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +ID ++   +           + +LR++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KHAQIDELIIPHVERPFNEVSPIEKAILRMATYELTFRKDVPYKVAINEAIELAKTF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|261200933|ref|XP_002626867.1| methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239593939|gb|EEQ76520.1| methyltransferase [Ajellomyces dermatitidis SLH14081]
          Length = 871

 Score = 97.3 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 60/239 (25%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------------KKLFDA 309
            A D   +R   L   + RL+     +   DA  Y                      FD 
Sbjct: 237 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSLKLPSLPPPEGKPVRNRYLKFDR 296

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L D PCS  GT R++ +V    +  + +     Q ++L + +  +K GG VV+S CS++
Sbjct: 297 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQCRILTRALQMLKVGGRVVYSTCSMN 356

Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT-------- 416
             ++E V+  V+     P  V ++  ++      +S  ++     +   R          
Sbjct: 357 PVENEAVIASVIDRCGGPSKVHIMDCSNELPALKRSPGLSSWTIMDKQGRTWSSWKDVEE 416

Query: 417 -----------------P---------DMLEKIDGVSSGMDGFFAVALRRL----IQPK 445
                            P             ++         FF   L ++     +P+
Sbjct: 417 AVSQGDDTLNRIVEGMFPPLKEEGIDLSRCMRVYPHQQDTGAFFITVLEKMSDIKARPE 475


>gi|114629650|ref|XP_001153934.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 isoform 2 [Pan
           troglodytes]
          Length = 516

 Score = 97.3 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 23/156 (14%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FD +L+DAPCS  G   + P++  T    ++      QRKL    +  +KP G++V+
Sbjct: 361 PESFDRILLDAPCSGMG---QRPNMASTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVY 417

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C++   ++EE V   L   P  ++L P              LS E   ++       +
Sbjct: 418 STCTITLAENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAV 476

Query: 424 DGVSSGMD-------------------GFFAVALRR 440
               + MD                   GFF     +
Sbjct: 477 PLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 512


>gi|114629652|ref|XP_001153814.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 isoform 1 [Pan
           troglodytes]
          Length = 464

 Score = 97.3 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 23/156 (14%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FD +L+DAPCS  G   + P++  T    ++      QRKL    +  +KP G++V+
Sbjct: 309 PESFDRILLDAPCSGMG---QRPNMASTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVY 365

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S C++   ++EE V   L   P  ++L P              LS E   ++       +
Sbjct: 366 STCTITLAENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAV 424

Query: 424 DGVSSGMD-------------------GFFAVALRR 440
               + MD                   GFF     +
Sbjct: 425 PLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 460


>gi|297616617|ref|YP_003701776.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144454|gb|ADI01211.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
           12680]
          Length = 138

 Score = 97.3 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR  +  +L  V     S    L     ++    L+ R     R +V+ TL  +
Sbjct: 1   MSRSL-ARETAFKVLFQVDLAGASPRDALQHLTAETP---LADRYLAFARELVDKTLEHV 56

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID+ +       S+ R     + ++R++V ++LY ++    V++ AVE AK+   + +
Sbjct: 57  KTIDSYISKYSPEWSISRMATVDRNIMRMAVCEMLYTEIDPVVVINEAVELAKKY-GDEN 115

Query: 120 FAKLVNSILRRVS 132
            +  +N+IL R+ 
Sbjct: 116 SSSFINAILDRIM 128


>gi|127512123|ref|YP_001093320.1| transcription antitermination protein NusB [Shewanella loihica
           PV-4]
 gi|166215717|sp|A3QC63|NUSB_SHELP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|126637418|gb|ABO23061.1| NusB antitermination factor [Shewanella loihica PV-4]
          Length = 134

 Score = 97.3 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + +   D    R +++ T  
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTE---QKIDGVDVSYFRELLSGTTT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ++D ++   L           + +LR++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KSAQLDELIMPHLERPFDEVSPIEKAVLRIATYELTFRKDVPYKVAINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|218883897|ref|YP_002428279.1| putative RNA methylase, NOL1/NOP2/sun family [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765513|gb|ACL10912.1| putative RNA methylase, NOL1/NOP2/sun family [Desulfurococcus
           kamchatkensis 1221n]
          Length = 340

 Score = 97.3 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 34/325 (10%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----------KFDIETWAHK 192
           A       +  +R     G +  L + +A   P+   + V             +E+   +
Sbjct: 22  ALRYGYLPYMVQRYLEMLGPDEALELLEAFEKPVKPVVRVNTLLIRPGELMERLESLGFQ 81

Query: 193 LNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-SVLDLC 249
           L  +        + + P S  I S   + +G +++   ++S+   L    N    VLD C
Sbjct: 82  LEEIPWAPASFWVVKTPRSPTIGSTHEYLKGYYYIHRDASSLIPVLLLLHNYEGDVLDAC 141

Query: 250 AAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302
           AAPGGK   +           V A D    RL+ L  +L R+ L    +           
Sbjct: 142 AAPGGKATFMAQILKERGKGIVYANDYVLYRLKTLVGHLLRMKLDNVVVAWSNALNLPGK 201

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             + F  +L+DAPCS  G I   P         D+   A  +  LL + I  +   G++ 
Sbjct: 202 LGRRFKRILLDAPCSGEGRISVDPGRKTRTSILDLAMLAKREILLLDRLIDLLDENGVLA 261

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPI------PVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           +S CS+  +++E V+ ++L S          ++L   +        M      E  IR+ 
Sbjct: 262 YSTCSIAPEENEYVLSRILNSRSDIEIIEPELKLFNYSPWLTHYRSMEFPRDLEKCIRVW 321

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P           G+ GF    +RR+
Sbjct: 322 PH--------RHGLFGFTTCLIRRI 338


>gi|195452298|ref|XP_002073293.1| GK13235 [Drosophila willistoni]
 gi|194169378|gb|EDW84279.1| GK13235 [Drosophila willistoni]
          Length = 440

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 16/233 (6%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVS 272
                  + +Q     +  +L       +VLD+CAAPG KT  L     +  ++ A++ S
Sbjct: 209 DFVRSKKFILQSKGTCLAAELLDPPPGSTVLDMCAAPGMKTVHLCNVMENKGRIYAVEQS 268

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLW 330
             R + L    D         I  DA         D   +LVD  CS  G   R   V  
Sbjct: 269 GDRYKTLCNITDAAGCKIVTPILGDALTMDSNSCPDVEYILVDPSCSGNGMQNRISVVDE 328

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
            +D D + K A  Q K+L   +        + +  CSL ++++E+VVQ  L+ +P    L
Sbjct: 329 QKDDDRLFKLAGLQAKILSHAMRAFPNVKRIAYCTCSLWQEENEKVVQFCLQVNPSFKLL 388

Query: 391 ---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                L + +    D  +A   +  +   PD        S   DG F     +
Sbjct: 389 SGKKALRNKWQSVGDSEIANIGKKCLYCRPD--------SDLTDGIFLALFEK 433


>gi|281413928|ref|ZP_06245670.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
           luteus NCTC 2665]
          Length = 229

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 83/216 (38%), Gaps = 28/216 (12%)

Query: 244 SVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
             LDLCA PGGK A L       GA + A +V+  R + +R  L  +   A  +   D  
Sbjct: 18  RWLDLCAGPGGKAALLAALAAERGATLVANEVAPHRADLVRQALAAVPAGAWTVRAGDGR 77

Query: 300 DYCPKK----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                      FD VLVDAPC+  G +RR P+  W R   D+ +    Q +LL   ++ +
Sbjct: 78  TIADAPEAAPAFDRVLVDAPCTGLGALRRRPESRWRRTPADLAELTGLQAELLDAAVAVL 137

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSP-----------IPVELVPLNSAYWKSIDMA 404
            PGG++ +  CS    ++   VQ ++R  P             V L  L     +     
Sbjct: 138 APGGVLAYVTCSPHVAETVVQVQDLVRRHPELELLDARTALDAVALDDLRLDEAEPAGAP 197

Query: 405 MALS-PEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                     ++ P           G D  F   LR
Sbjct: 198 EPADVVARTAQLWPH--------RHGTDAMFLALLR 225


>gi|109088363|ref|XP_001094721.1| PREDICTED: hypothetical protein LOC706352 [Macaca mulatta]
          Length = 323

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 96/316 (30%), Gaps = 31/316 (9%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT----GGIRL 205
           EW        +  +     +       +I        E W  + N               
Sbjct: 10  EWIVMEWSMAWNGDWNGVENGKENGKQWIMEWSMEWNEEWNGEWNEEWNGEWNGRESGME 69

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK 265
            +  E  V   G   GV W  + +       +  +      +     G K     V   +
Sbjct: 70  WKGREGRVDWNGIENGVEWRIEYNGMERRMEYNGMEQRMEWN-GECNGMKNGMKNVLEWR 128

Query: 266 VTALDVSKRRLEKLRCNLDRL--HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
           +   D                   L + +I +     + P+  FD +L+DAPCS  G   
Sbjct: 129 MKQGDSGTPESACFTMIEQAFFRGLSSVEITKRREPPFLPES-FDRILLDAPCSGMG--- 184

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + P++  T    ++      QRKL    +  +KP G++V+S C++   ++EE V   L  
Sbjct: 185 QRPNMACTWSLKELASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWALTK 244

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD------------ 431
            P  ++L P              LS E   ++       +    + MD            
Sbjct: 245 FPC-LQLQPQEPHIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLR 303

Query: 432 -------GFFAVALRR 440
                  GFF     +
Sbjct: 304 LANKDSIGFFIAKFIK 319


>gi|317128425|ref|YP_004094707.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522]
 gi|315473373|gb|ADU29976.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522]
          Length = 132

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR+ +   L  +    +S    +D    +             +  +V  T+  L
Sbjct: 1   MNRRV-ARVRAVQSLYQIEMTGVSPDQAIDTVLENGEISD------SFLSQLVEGTVEHL 53

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID +L   L +  L R     + +LR++  ++  L D+     ++ A++ AK      
Sbjct: 54  HEIDELLISALKNWALSRISRVDRAILRMATYEMKCLDDIPMNVSINEAIDIAKGFTGEE 113

Query: 119 HFAKLVNSILRR 130
              K VN IL  
Sbjct: 114 ESGKFVNGILSN 125


>gi|71998419|ref|NP_497089.2| hypothetical protein Y53F4B.4 [Caenorhabditis elegans]
 gi|34556111|emb|CAB70101.2| C. elegans protein Y53F4B.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 439

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 76/456 (16%), Positives = 154/456 (33%), Gaps = 55/456 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
            + ++ CV+ K  S+         ++ +    +  + L+R +   +L+F P  D +L   
Sbjct: 10  VAEIIRCVLAKEKSV--------RNAVYGSSYKNKKALLR-LSCESLKFRPVFDEILQ-- 58

Query: 71  LISSLPRKKYSLQQ-----LLRVSVAQ------ILYLDVADYAVVDLAVEQAKRDKENRH 119
               L   K          LL V + +      +        +V+   +++ K  +    
Sbjct: 59  -DKELKSMKRDANIGGSVELLYVLMYETLVGSGLTRCSQELKSVISRRIQRIKEVEHAMQ 117

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                   ++       ++           +W  +        E+   +           
Sbjct: 118 DEGRGIKAMKEADDGMKKIQIPRYARINTLKWTADEAMKTLETEKWKILGTLKPENFAEM 177

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF---AEGVWWVQDASASIPVQL 236
           +T   D        + V +      L     +I +   +    +    +QD ++ +P  L
Sbjct: 178 VTKMKD--------DEVYVDPHVENLIIFAPNIQNFYEYWMVEQRYLILQDKASCLPAFL 229

Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
                   V D CAAPG KT+    ++ +  KV A+D +  R+  ++  LD   +     
Sbjct: 230 LNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADRVATMKQLLDASKVAIASS 289

Query: 294 IEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRDTDDIVKSACFQRKLL 348
              D                 +VD PCS +G ++R  ++     + + + K    Q  +L
Sbjct: 290 FCGDFLKTDVTDKKFSKVKFAIVDPPCSGSGIVKRMDEITGGNAEKERLEKLKNLQAMIL 349

Query: 349 LQGISFVKPG-GIVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAM 405
              +    PG    V+S CS+ ++++E+VV +VL  +       L       W    +  
Sbjct: 350 KHALKL--PGLKRAVYSTCSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEWTYRGLKT 407

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               E  +R  P +           +GFF     R+
Sbjct: 408 YEVGEHCLRANPKVTL--------TNGFFVAVFERV 435


>gi|328768988|gb|EGF79033.1| hypothetical protein BATDEDRAFT_17142 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 414

 Score = 96.9 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 136/392 (34%), Gaps = 36/392 (9%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVL--DFVLISSLPRKKYSLQQLLRVSVAQILYLDVA 99
             +D+ LV  IV  TL++   I+ ++    +  S   +    L  +L   V  +L+    
Sbjct: 29  DPKDKKLVYGIVCETLKYREVIEEIICSSDIRKSEPKKLAKPLLTVL---VYDLLFGK-- 83

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
                    +   R K   +   +   + R+    +  + + I    ++P + +    N 
Sbjct: 84  GIKNAGKYKDMLMRHKSRLNAELVKIKVKRKCKNNQDLIPEHIRNAIVLPRYVR---INT 140

Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219
                   IS        +D   K +   +             + L      +       
Sbjct: 141 IKTNMEQVISHFEKKGYRLDTIEKLNEPEYPAMCMIKDQHLPELLLLPPSTDLHEDKLLL 200

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRL 276
           +G   +QD ++  P  +         +D CAAPG KT+ L     +   + A D  + RL
Sbjct: 201 QGHIVLQDKASCFPAYILSPPKGSVCIDACAAPGNKTSHLSAILGNTGTIYAFDKDRARL 260

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----------DAVLVDAPCSSTGTIRR-H 325
           + L+    +              D  P              + VL+D  CS +G + R  
Sbjct: 261 DTLQRLTHQAGCKNILPQFGSFLDADPFDPMFSKARNAMFVEYVLLDPSCSGSGIVGRLD 320

Query: 326 PDVLWTRDTDDIVKS----------ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
             +  ++D     +           A FQ+K++L    F K    +V+S CS ++ ++E+
Sbjct: 321 HLLKNSKDAKADTQQEEIDDRANALADFQKKVILHAFKFPKVK-RIVYSTCSRNRIENED 379

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
           VVQ  L+ +     LV      W    +  ++
Sbjct: 380 VVQYCLQEN-TNFSLVENVFPQWHRRGLEGSI 410


>gi|49903226|gb|AAH76487.1| Zgc:109983 [Danio rerio]
          Length = 379

 Score = 96.9 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 22/234 (9%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             +++ +A++ +PV         +VLDLCAAPGGK+  ++ +         +V + R + 
Sbjct: 154 KQYYLLNAASLLPVLALNVQEGENVLDLCAAPGGKSLAILQTATPGLLHCNEVDQHRHDW 213

Query: 279 LRCNLDRL------HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRRHPDV 328
           L   L+        HL +  + +  +        +D VLVDAPCS+      T   H   
Sbjct: 214 LLKTLESYVPPSLRHLLSVTLQDGRSIGTMQPGAYDKVLVDAPCSNDRSWLYTPDTHRGE 273

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           +W +   +  +    Q++LL   ++ V+PGGIVV+S C++ + +++ VV++VL S P  V
Sbjct: 274 MWLK---ERTQLPLLQKELLCSALAAVRPGGIVVYSTCTMSRAENQSVVEEVLASYPG-V 329

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG-FFAVALRRL 441
           EL  L   +  S+      +      + P + + +        G  +   L+++
Sbjct: 330 ELQELEQQFIDSLSDHFCFA-----HLHPSVGQLVIPQKGKTWGPMYVSQLKKI 378


>gi|330842051|ref|XP_003292999.1| hypothetical protein DICPUDRAFT_41394 [Dictyostelium purpureum]
 gi|325076705|gb|EGC30470.1| hypothetical protein DICPUDRAFT_41394 [Dictyostelium purpureum]
          Length = 491

 Score = 96.9 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 37/254 (14%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------------IVS 262
           L G  E   ++Q   + + V          +LD+CAAPGGKT  +              +
Sbjct: 246 LNGVLEQNMFLQHLPSLMTVYQLEPKLGDRILDMCAAPGGKTTLIASLIQQQFDQQPSNN 305

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMD-------------AFDYCPKKLFD 308
             ++ ALD +K +++K+     +L L +       D                   +  FD
Sbjct: 306 STEIIALDKNKGKVKKVLDLCKKLSLDSFVKCYSRDSSKLLKEHQQDPSDKVIFKEGSFD 365

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +L+D PCS  G+  R  +        D+   + FQ+KLL   +  +K GG +V+S C++
Sbjct: 366 KILLDGPCSGLGSKPRFIETSKLI---DLQNCSDFQKKLLDVAVGLLKEGGTLVYSTCTI 422

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI--RITPDMLEKIDGV 426
           + +++E  V  VL   P    +          ++       +  +  R  P         
Sbjct: 423 NPEENELNVAYVLNKYPNMKLVEQTPHISQIGLENCGLDDQQRKLVQRYDPSD------A 476

Query: 427 SSGMDGFFAVALRR 440
           + G  GFF     +
Sbjct: 477 NIGTIGFFISKFIK 490


>gi|75909870|ref|YP_324166.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Anabaena variabilis ATCC 29413]
 gi|75703595|gb|ABA23271.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Anabaena variabilis ATCC 29413]
          Length = 322

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 11/228 (4%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGK 255
                +    L E         +G ++  D S+     +      +   V D+CAAPGGK
Sbjct: 59  WQPKFVDRLHLGEKPGQHTLHHQGYFYCLDFSSVFAASILLTIPQSVSLVFDMCAAPGGK 118

Query: 256 TAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVL 311
           +           +   +V  +RL  L  NL R  +    I   D+  +        + V+
Sbjct: 119 SVFAWQALHPDLIICNEVIGKRLGMLISNLKRCQISPSIIFNRDSSIFAENIPLSSNLVI 178

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           VDAPC+    + +            I KSA  Q++++      V P G + +  C+   +
Sbjct: 179 VDAPCTGQSLLAKGEKAPGCFHPTAINKSANRQKRIIANSAQIVAPQGYLAYMTCTYSPE 238

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           ++E+V +  L   P                +    L+     R+ P  
Sbjct: 239 ENEQVCEWFLSRFPQF-----QPVRINHLQECQSHLTNIPCYRLFPQD 281


>gi|22298793|ref|NP_682040.1| hypothetical protein tlr1250 [Thermosynechococcus elongatus BP-1]
 gi|22294974|dbj|BAC08802.1| tlr1250 [Thermosynechococcus elongatus BP-1]
          Length = 351

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 11/216 (5%)

Query: 213 VSLPGFAEGVWWVQDASASI--PVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTA 268
              P  A G ++  D+S+       L        V+D+CAAPGGK+           +  
Sbjct: 100 GQHPLHAAGAYYCLDSSSVFAAVPLLTLPQEPSLVIDVCAAPGGKSLFAWRSLHPRYLIC 159

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326
            +   +R+ KL  NL R  ++   +   D+     +     D V+VDAPCS    + +  
Sbjct: 160 NETIGKRVGKLIGNLKRCRVHPVGVTSWDSEVLAAEFQGTADVVIVDAPCSGQSLLAKGQ 219

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
                     I  +   Q+++L    + V+PGG +++S C+  + ++E+V   ++   P 
Sbjct: 220 KAEGCFHPLTIRHNQRRQKRILAAATTLVRPGGWLLYSTCTFSQDENEDVAAWLMAKFPH 279

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
                 L             L+     R+ P   E 
Sbjct: 280 L-----LPQPVPALAAYQSHLAAFPCYRLWPHQGEG 310


>gi|163750010|ref|ZP_02157254.1| transcription antitermination protein NusB [Shewanella benthica
           KT99]
 gi|161330284|gb|EDQ01265.1| transcription antitermination protein NusB [Shewanella benthica
           KT99]
          Length = 134

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + +   D    R +   T  
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QKIDGIDVAYFRELFTGTTT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +ID ++   +           + +LR++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KSAQIDELIIPHVERPFAEVSPIEKAILRMATYELTFRKDVPYKVAINEAIELAKTF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|295399119|ref|ZP_06809101.1| NusB antitermination factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110278|ref|YP_003988594.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1]
 gi|294978585|gb|EFG54181.1| NusB antitermination factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215379|gb|ADP73983.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1]
          Length = 132

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +   RI     L    G              +R +V       
Sbjct: 1   MK-RHEAREKALQALFQIDVGRIPPEEALQNVMGGEEAD-------SFLRQLVFGVTEHQ 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID +L   L   +L R     + +LR++  ++ YL DV     +D AVE AK+  + +
Sbjct: 53  EEIDELLRANLEKWTLERVANVDRAILRMAAYEMKYLDDVPVKVSLDEAVELAKKFGDTK 112

Query: 119 H 119
            
Sbjct: 113 S 113


>gi|52545774|emb|CAH56289.1| hypothetical protein [Homo sapiens]
          Length = 245

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 93/252 (36%), Gaps = 24/252 (9%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L                  KT+ L     
Sbjct: 6   VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLK 65

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317
           +  K+ A D+  RRL  +   L    +   ++ E D     P          VL+D  CS
Sbjct: 66  NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125

Query: 318 STGTIRRHP---DVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQD 372
            +G +           T     +   A FQ++ L   ++F  ++    +V+S CSL +++
Sbjct: 126 GSGGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEE 182

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           +E++VQ  L+ +P    L P   A      ++     E  +R +P              G
Sbjct: 183 NEDMVQDALQQNPGAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------G 233

Query: 433 FFAVALRRLIQP 444
           FF   + R+  P
Sbjct: 234 FFVAVIERVEMP 245


>gi|120553778|ref|YP_958129.1| NusB antitermination factor [Marinobacter aquaeolei VT8]
 gi|166215695|sp|A1TYX3|NUSB_MARAV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120323627|gb|ABM17942.1| NusB antitermination factor [Marinobacter aquaeolei VT8]
          Length = 158

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L      +  ++ +      D+    +S+ D +  R ++    R    +D +
Sbjct: 25  ARALAMQGLYQRHFSKTPISDIEAEFMVDN---DMSKVDIMYFRDLLRGVHREQAELDKL 81

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           L+  L   L         ++R+   ++ + +DV    V++  +E AKR        
Sbjct: 82  LEPFLDRPLKEVDPVELAIVRLGAYELKHRIDVPYKVVINEGIEMAKRFGGTEGHK 137


>gi|256053221|ref|XP_002570098.1| methyltransferase ncl1 [Schistosoma mansoni]
 gi|227287472|emb|CAY17780.1| putative methyltransferase ncl1 [Schistosoma mansoni]
          Length = 738

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 105/312 (33%), Gaps = 92/312 (29%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------------------L 259
              Q+A + +P  L    ++ ++LDLCAAPG K+AQ                        
Sbjct: 139 ISRQEAVSMLPPLLLDVRSHHTILDLCAAPGSKSAQLVELLHSDAEAVQLKIGVENAPKY 198

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---------------- 303
           +     V A D  ++R   +   + RL      I + DA  +                  
Sbjct: 199 VEPTGMVIANDFDQKRCYMMVHQVKRLQSPCVVITQEDATCFPRLYLTLSPDEKTGQKDL 258

Query: 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGG-- 359
            + +FD VL D PCS  GT+R++PD+         +     Q ++L +G+  ++ P G  
Sbjct: 259 RQLMFDRVLADVPCSGDGTLRKNPDLWLRWSPSLGIGEHPLQCRILKRGLELLRDPVGDS 318

Query: 360 ----IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID------------- 402
                +V+S CS +  ++E VV  VL +    V L+  +       D             
Sbjct: 319 TNYSRLVYSTCSFNPVENEAVVASVLHACRGTVRLIEPDILEGILPDSSENKDSSRRKFK 378

Query: 403 -----MAMALSPEGWI--------------RITPDML-------------EKIDGVSSGM 430
                 +  +     +               I P M              +++       
Sbjct: 379 FRPGLNSWRIMDRKGVWFTSYDEVPTGQRSFIYPSMFPPSNVSDLHLERCKRVLPHDQNT 438

Query: 431 DGFFAVALRRLI 442
            GFF   L ++ 
Sbjct: 439 GGFFIAVLEKIA 450


>gi|170725747|ref|YP_001759773.1| transcription antitermination protein NusB [Shewanella woodyi ATCC
           51908]
 gi|238688678|sp|B1KJK5|NUSB_SHEWM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169811094|gb|ACA85678.1| NusB antitermination factor [Shewanella woodyi ATCC 51908]
          Length = 134

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + +   D    R +++ T  
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QKIDGIDVTYFRELLSGTAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +ID ++   +           + +LR++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KQAQIDELITPHIERPYDEVSPIEKAVLRLATYELTFRKDVPYKVAINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|307106730|gb|EFN54975.1| hypothetical protein CHLNCDRAFT_24352 [Chlorella variabilis]
          Length = 491

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 32/240 (13%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280
             ++ ++ +P          +++D CAAPG KT  L   + +   + A +   +RLE+LR
Sbjct: 234 EHRNKASCMPAHALAPQPGWALVDACAAPGNKTTHLAALMANRGSIVAFEKDPKRLERLR 293

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDA----VLVDAPCSSTGTIRRHPDVL------- 329
             +             D     P+         VL+D  CS +GT     D L       
Sbjct: 294 AIVAATGGTIISPQLADFLAVDPEAPQYRHVQAVLLDPSCSGSGTAFSRMDYLLPSSADR 353

Query: 330 -------WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
                  W  D   +   A FQ   +L  + F      +V+S CS+  +++E VV  VL 
Sbjct: 354 LKGGRAGWLPDKR-VEALAQFQAACILHALRFPALH-RLVYSTCSVHARENEGVVAAVLE 411

Query: 383 S-SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +     L      + +     +    E  +R+        D    G DGFF     + 
Sbjct: 412 EAAQRGFRLEAPFPGWPRRGVEGLVAGAERLVRV--------DADEDGTDGFFVAVFAKK 463


>gi|194876441|ref|XP_001973776.1| GG16283 [Drosophila erecta]
 gi|190655559|gb|EDV52802.1| GG16283 [Drosophila erecta]
          Length = 439

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 24/234 (10%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT+ +   +     V ALD S  R+  +   
Sbjct: 211 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDWGSVVALDNSASRVRSMLPK 270

Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           L         + +                      P   FD +L+DAPCS  G   R   
Sbjct: 271 LGNYKSIKTHVFDSTKAVAPDAPSAPIGEFTGPPFPCASFDRILLDAPCS--GLGNRPQL 328

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
               +    +      QR+L  Q +  ++PGGI+V+S C++ + + E +V   L      
Sbjct: 329 SCSIKQAKILSSYPNIQRRLFEQAVQLLRPGGILVYSTCTVTEDECECLVAWALEKF-SE 387

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + L       W    + +    +   R+        +G S+   GFF    ++ 
Sbjct: 388 LHLTDATPR-WGGSGLPLPGFEKCKSRLL--QRFGPNGASADTVGFFIAKFQKK 438


>gi|149278803|ref|ZP_01884938.1| Fmu (Sun) domain protein [Pedobacter sp. BAL39]
 gi|149230422|gb|EDM35806.1| Fmu (Sun) domain protein [Pedobacter sp. BAL39]
          Length = 388

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 35/228 (15%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRL 276
               + VQD S+      F         D CAA GGK      +    ++   DV +  L
Sbjct: 188 DHRYYQVQDLSSQKTGNYFKPEKWDYWWDCCAASGGKSLLLHDLEPSVQLLVSDVRENSL 247

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
             L     +  L       +D             FD +L+DAPC+ +GT  R P++L+  
Sbjct: 248 NNLEERFQQAGLKKYQKKVLDLLQNNEQDLHHYEFDGILLDAPCTGSGTWGRTPEMLYYF 307

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
           D   I   A  Q+ +    + ++KPG  +++  CS+ KQ++EEV+  +  +  + +E + 
Sbjct: 308 DQRKISGFARLQKSIAGNVVKYLKPGKPLIYITCSVFKQENEEVIAFLEENHGLKLEKME 367

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + + Y    D                               F   L +
Sbjct: 368 VITGYNDKADT-----------------------------MFVARLIK 386


>gi|171185373|ref|YP_001794292.1| Fmu (Sun) domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170934585|gb|ACB39846.1| Fmu (Sun) domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 416

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 143/439 (32%), Gaps = 47/439 (10%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
           + +L  V +  ++L                 +             +R    +  +   +L
Sbjct: 13  AKVLHEVTKNGLTLDYAFQKVKRGWRRLDSFKV----FYDASFDAVRHYFLLRHLASALL 68

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            S+  +       + R    ++LY            VE+ +R    R  A+   ++    
Sbjct: 69  GSTSAKAVARTWFVYR--ADKLLYNR--------DLVERYRRRVLKRARARPEEALASLE 118

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWA 190
           +             S  P   K  L N   +E    +     + +++ +  +K D++   
Sbjct: 119 ALRGDLPRYLSVKYSYHPAIVKTLLANLPPEEVERILDAGNNTWIWLRVNTLKTDVDKAL 178

Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
             L          R+            +  L          QD ++   V          
Sbjct: 179 KMLEREAEVEPHPRIPFALLLKKAKRPVQYLTAVRTFAAVPQDLASIYAVLSLDPAPGEK 238

Query: 245 VLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           +LDL AAPG K     QL    AKV A D S +R+ +++  L  L       +       
Sbjct: 239 ILDLAAAPGMKTSLIVQLAEGRAKVVAADFSAKRVARMKHLLKALGAGDAVEVVRADSRR 298

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
              + FD  L+DAPC+S+G   + P V      ++  +    QR+LL   +S  +    V
Sbjct: 299 LKTRRFDKALLDAPCTSSGAFTKEPAVKIYPRVEEAPRYGTLQRELLANALSLAE---QV 355

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V++ CS+  Q+ EEVV                  A     D+A A       R  P +  
Sbjct: 356 VYAVCSIMPQEGEEVVASA------------PAKAEKPHPDLAPAYRGGPGGRTFPHI-- 401

Query: 422 KIDGVSSGMDGFFAVALRR 440
                    + F+   +++
Sbjct: 402 ------HKSEAFYIALVQK 414


>gi|195592453|ref|XP_002085949.1| GD15057 [Drosophila simulans]
 gi|194197958|gb|EDX11534.1| GD15057 [Drosophila simulans]
          Length = 440

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 85/233 (36%), Gaps = 24/233 (10%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT+ +   +     V ALD S  R+  +   
Sbjct: 212 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 271

Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           L         +                        P + FD +L+DAPCS  G   R   
Sbjct: 272 LGHYKCITAHVFNSTKAVAPDAPSAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 329

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
               +    +      QR+L  Q +  ++PGG +V+S C++ + + E +V   L    + 
Sbjct: 330 SCSIKQAKVLSSYPPIQRRLFEQAVQLLRPGGTLVYSTCTVTEDECECLVAWALGKF-VQ 388

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + L      +                R+         G ++   GFF    ++
Sbjct: 389 LRLTDATPRWGGPGLSLPGFEASKS-RLL--QRFGPSGANADTVGFFIAKFQK 438


>gi|307718878|ref|YP_003874410.1| NOL1/NOP2/sun family protein [Spirochaeta thermophila DSM 6192]
 gi|306532603|gb|ADN02137.1| NOL1/NOP2/sun family protein [Spirochaeta thermophila DSM 6192]
          Length = 277

 Score = 96.5 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 85/226 (37%), Gaps = 16/226 (7%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLR 280
           +  D ++  P  L        VLDLCAAPGGKT  L ++      + A + S  R  +L+
Sbjct: 50  YHLDPASLYPPALLAPEPGHRVLDLCAAPGGKTLLLALALKGRGLLVANEYSSSRRARLK 109

Query: 281 CNLDRLHLYA------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
             L                 +   +     + +D +L D PCSS   +   P  L     
Sbjct: 110 QVLTLHLPTHLLAPIRVAGRDGRTWGIHEPEAYDRILADVPCSSEAHLLSSPSHLSRWTP 169

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
             I      Q  LL      + PGG++V++ C+L  Q+++ VV+K++      +E+V   
Sbjct: 170 ARIRNLTHTQFALLSSAFLALAPGGLLVYATCALTPQENDGVVEKLVTRRGNALEIVQDP 229

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                S+             I PD       +       +   +R+
Sbjct: 230 PPLPASLPPLTLEPTRYGFHILPDTSRGAGPL-------YMALIRK 268


>gi|190572778|ref|YP_001970623.1| transcription antitermination protein NusB [Stenotrophomonas
           maltophilia K279a]
 gi|229620370|sp|B2FNL4|NUSB_STRMK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190010700|emb|CAQ44309.1| putative N utilization substance protein B (protein nusb)
           [Stenotrophomonas maltophilia K279a]
          Length = 159

 Score = 96.5 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   +        +   L+     + A  +    D     A+++  L     ID  
Sbjct: 27  ARRRAVQAIYAWQISGGNAQSLIAQFAHEQAREI---ADLAYFEALLHGVLDNRRDIDEA 83

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L   +       + +LR++  ++ Y LDV    V++ A+E AKR   + H    VN
Sbjct: 84  LGPYLDRGIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAKRF-GSEHGHTYVN 142

Query: 126 SILRRVSREK 135
            +L R + E 
Sbjct: 143 GVLDRAAVEW 152


>gi|313901605|ref|ZP_07835044.1| NusB antitermination factor [Thermaerobacter subterraneus DSM
           13965]
 gi|313468135|gb|EFR63610.1| NusB antitermination factor [Thermaerobacter subterraneus DSM
           13965]
          Length = 214

 Score = 96.5 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R ++  +L         L   L    G+       +        +     R    ID ++
Sbjct: 17  REIALQVLFQWEAAGHPLEAGLQWAAGEY---NPGEEVLAFAADLAGGVTRHRLDIDGLI 73

Query: 68  DFVL-ISSLPRKKYSLQQLLRVSVAQILYL---DVADYAVVDLAVEQAKRDKENRHFAKL 123
                   L R     + +LR+ + ++LY    DV     ++ AVE AKR   +   A+ 
Sbjct: 74  ARYARDWDLERLARVDRNILRLGIYELLYAGRPDVPPPVAINEAVELAKRY-SSEDAARF 132

Query: 124 VNSILRR 130
           +N IL +
Sbjct: 133 INGILGQ 139


>gi|196248859|ref|ZP_03147559.1| NusB antitermination factor [Geobacillus sp. G11MC16]
 gi|196211735|gb|EDY06494.1| NusB antitermination factor [Geobacillus sp. G11MC16]
          Length = 130

 Score = 96.5 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 10/123 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I     +    G              +R +V   +   
Sbjct: 1   MK-RHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVD-------PFLRQLVFGVIEHR 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID +L   L    L R     + +LR++  ++ Y  DV     +D AVE AK+  + +
Sbjct: 53  AEIDELLRSNLEKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELAKKFGDWK 112

Query: 119 HFA 121
             +
Sbjct: 113 SGS 115


>gi|113969444|ref|YP_733237.1| transcription antitermination protein NusB [Shewanella sp. MR-4]
 gi|114046672|ref|YP_737222.1| transcription antitermination protein NusB [Shewanella sp. MR-7]
 gi|117919549|ref|YP_868741.1| transcription antitermination protein NusB [Shewanella sp. ANA-3]
 gi|119390820|sp|Q0HL87|NUSB_SHESM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390821|sp|Q0HXJ0|NUSB_SHESR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215719|sp|A0KU66|NUSB_SHESA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|113884128|gb|ABI38180.1| NusB antitermination factor [Shewanella sp. MR-4]
 gi|113888114|gb|ABI42165.1| NusB antitermination factor [Shewanella sp. MR-7]
 gi|117611881|gb|ABK47335.1| NusB antitermination factor [Shewanella sp. ANA-3]
          Length = 134

 Score = 96.1 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + L   D    R +      
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QSLDGVDVAYFRELFAGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ++D +    L   +       + ++R++  ++ +  DV     ++ A+E AK    +
Sbjct: 58  KKTQLDELFIPHLDRPIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGAD 117

Query: 118 RHFA 121
               
Sbjct: 118 ESHK 121


>gi|255079668|ref|XP_002503414.1| predicted protein [Micromonas sp. RCC299]
 gi|226518680|gb|ACO64672.1| predicted protein [Micromonas sp. RCC299]
          Length = 985

 Score = 96.1 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 129/478 (26%), Gaps = 116/478 (24%)

Query: 67  LDFVLISSLPR------------KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
           +D  L     R                ++  LR +  Q+   ++  +          ++ 
Sbjct: 287 IDDALARPKKRPRSSDAAAASDSSAARVKNALRSA--QLDKRELLLWRKFGYGPSLFRQY 344

Query: 115 KENRHFAKLVN------SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
              +      +      +           L       +   +    +L +      +  +
Sbjct: 345 YRAQGLVDGDDELEEVEACYSTALPITFRLHATDGRRASSLKARLRQLRDANLVHGLEWM 404

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228
                     +       E     +  V+       L    E++  LP            
Sbjct: 405 PADEGWQAAAETRDAGRREKLHEAVAEVVDAGTSSGLLARQEAVSMLP------------ 452

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------------LIVSGAKVTALDVSKRR 275
              + V          VLD+CAAPG KT Q                    V A D    R
Sbjct: 453 ---VLVLAPHLKPGDRVLDVCAAPGNKTMQLLERVSPPEDGDERGGVRGLVVANDAHPGR 509

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAPCSSTGTIRR 324
           ++ L+  + R    A ++  +       + +           +DAVL D PCS  GT R+
Sbjct: 510 VKTLQDAIKRHARSAREMESLVVTCSYGQDVPVPIFDDGIEGYDAVLADVPCSGDGTFRK 569

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            PD L              Q  +  +    VKPGG +++S CSL+  + E VV  +L+ +
Sbjct: 570 DPDALRRWHPGGGNALHATQVAVARRMTQLVKPGGHLLYSTCSLNPVEDEAVVAAILKEN 629

Query: 385 PIPVELVPLNSAYWKSIDMAMALS-----------PEGWIRI------------------ 415
           P    +     A    +     +S            +G  R                   
Sbjct: 630 PEFELVKGAMDAGAPGMRYRPGVSTWKVAEHAFKGQDGTSRFDSDSESESDDDVTLRWYD 689

Query: 416 -----------------TP-----------DMLEKIDGVSSGMDGFFAVALRRLIQPK 445
                             P           +   ++        GFF   LRR  + K
Sbjct: 690 DYGTATAAGMPATEVSMWPPSQEVAKRMHLERCARLLPHDQDTGGFFIALLRRKAKKK 747


>gi|297670565|ref|XP_002813436.1| PREDICTED: putative methyltransferase NSUN3-like [Pongo abelii]
          Length = 340

 Score = 96.1 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 104/291 (35%), Gaps = 22/291 (7%)

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220
                         +L     ++ +       +          L  +   +P        
Sbjct: 50  WQYAVLLNRFNYPFELEKDLHLKGYHTLFQGSLPNYPKSMKCYLSRTPGRIPSERHQIGN 109

Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSK---R 274
              +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +       
Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLM 169

Query: 275 RLEKLRCNLDRLHLYAED-IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330
            L +   +     L     + E+D       +   FD VLVDAPCS+  +          
Sbjct: 170 WLRQTLESFIPQPLTNVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKA 229

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           +            Q +LL   I  ++PGGI+V+S C+L K ++++V+ ++L S    + +
Sbjct: 230 SCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHSNIMPV 289

Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                A   S D   A + +   + + PD  +            +   L++
Sbjct: 290 DIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333


>gi|190347500|gb|EDK39780.2| hypothetical protein PGUG_03877 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 514

 Score = 96.1 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 152/449 (33%), Gaps = 57/449 (12%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88
           L+ +  ++     S +    + A+V  T+R+ P ++ V+    I    + K         
Sbjct: 86  LNTQIFNNKHLSSSPK---HIYALVYSTMRYKPYLEEVIKKSKIRQSSKLKKLKVS---- 138

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL-----LQRIA 143
                     +   ++   +  + R +       + +++L   +R + EL       ++ 
Sbjct: 139 ---------DSLLLLLVHDLLFSPRGRIESGKHPIKDAVLENKTRLQAELIKLKLRYKVK 189

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYID----LTVKFDIETWAHKLNAVMLP 199
            ++ +P    E+ E      R+  I  +    +  D    L      +  A         
Sbjct: 190 TLADLPN-TVEQDETPIRWIRINTIVASEEEVMREDFFEKLKFVDSTDEIASGKIYRDTI 248

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL---FGTLNNLSVLDLCAAPGGKT 256
              +      E I +   +  G   +QD ++  P Q+        +  V+D CAAPG KT
Sbjct: 249 VTNLYGIHPSEKITNTEAYKNGKIIIQDRASCFPAQILNGDPENQHEVVIDACAAPGNKT 308

Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAV 310
                 +     V A +   +R++ L+    +          I   D     P       
Sbjct: 309 THLASFLPKNGVVHAFERDDKRVKTLKMMTSKALGPNKDLIQITHADFMTIIPSDFPKVT 368

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIV--------KSACFQRKLLLQGISFVKPGGI-V 361
            +    S +G+      +   +   D          K A FQ K++   + F  PG   +
Sbjct: 369 GIVVDPSCSGSGIFGRALEDAQSEQDRETIDTERLTKLASFQFKIVKHTMKF--PGARKI 426

Query: 362 VFSNCSLDKQDSEEVVQKVLRS----------SPIPVELVPLNSAYWKSIDMAMALSPEG 411
           V+S CS+   ++E VV  +L            +P    L   +   WK   ++M+  P+ 
Sbjct: 427 VYSTCSIHPHENERVVMDLLADPEVKEQGWKLAPKEQVLPNWHRRGWKDEFVSMSRDPQV 486

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++    +  +     G  GFFA    R
Sbjct: 487 CEQLAGGCVRAV-PKEDGGIGFFAACFIR 514


>gi|114588065|ref|XP_516606.2| PREDICTED: putative methyltransferase NSUN3 [Pan troglodytes]
          Length = 340

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 107/291 (36%), Gaps = 22/291 (7%)

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220
                         +L     ++ +       +          L  +   +P        
Sbjct: 50  WQYAVLLNRFNYPFELEKDLHLKGYHTLFQGSLPNYPKSMKCYLSRTPGRIPSERHQIGN 109

Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLE 277
              +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL 
Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLR 169

Query: 278 KLRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330
            LR      + +  +    + E+D       +   FD VLVDAPCS+  +          
Sbjct: 170 WLRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKA 229

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           +            Q +LL   I  ++PGGI+V+S C+L K ++++V+ ++L S    + +
Sbjct: 230 SCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPM 289

Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                A   S D   A + +   + + PD  +            +   L++
Sbjct: 290 DVKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333


>gi|70778893|ref|NP_001020473.1| putative methyltransferase NSUN3 [Danio rerio]
 gi|123904618|sp|Q4KMK0|NSUN3_DANRE RecName: Full=Putative methyltransferase NSUN3; AltName:
           Full=NOL1/NOP2/Sun domain family member 3
 gi|68534673|gb|AAH98531.1| Zgc:109983 [Danio rerio]
          Length = 367

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 22/234 (9%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             +++ +A++ +PV         +VLDLCAAPGGK+  ++ +         +V + R + 
Sbjct: 142 KQYYLLNAASLLPVLALNVQEGENVLDLCAAPGGKSLAILQTATPGLLHCNEVDQHRHDW 201

Query: 279 LRCNLDRL------HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRRHPDV 328
           L   L+        HL +  + +  +        +D VLVDAPCS+      T   H   
Sbjct: 202 LLKTLESYVPPSLRHLLSVTLQDGRSIGTMQPGAYDKVLVDAPCSNDRSWLYTPDTHRGE 261

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           +W +   +  +    Q++LL   ++ V+PGGIVV+S C++ + +++ VV++VL S P  V
Sbjct: 262 MWLK---ERTQLPLLQKELLCSALAAVRPGGIVVYSTCTMSRAENQSVVEEVLASYPG-V 317

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG-FFAVALRRL 441
           EL  +   +  S+      +      + P + + +        G  +   L+++
Sbjct: 318 ELQEMEQQFIDSLSDHFCFA-----HLHPSVGQLVIPQKGKTWGPMYVSQLKKI 366


>gi|66825641|ref|XP_646175.1| hypothetical protein DDB_G0269676 [Dictyostelium discoideum AX4]
 gi|60474251|gb|EAL72188.1| hypothetical protein DDB_G0269676 [Dictyostelium discoideum AX4]
          Length = 518

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 307 FDAVLVDAPCSSTGTIR---RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +D V+VDA CS   +IR   ++  +    D +   +    Q+ L+  G   +KPGG +V+
Sbjct: 389 YDKVIVDAECSLDASIRHLLKYSKISRNLDLEKSKQLINLQKGLIENGFKLLKPGGHLVY 448

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS  K  +E VVQ +L   P   +L+P  +     I        E   R  P      
Sbjct: 449 STCSFSKDQNESVVQYLLNKYPDTSKLIPSFTTQNDIIIPFSPGFIENTFRFYP------ 502

Query: 424 DGVSSGMDGFFAVALRRL 441
               +G  G F   + ++
Sbjct: 503 ---KNGTSGMFISKIEKI 517


>gi|157876904|ref|XP_001686794.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68129869|emb|CAJ09175.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 763

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 98/296 (33%), Gaps = 75/296 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------------------I 260
              Q+  + IP  L     N   LD+CA+PG KTAQ+                       
Sbjct: 180 ISRQEEVSMIPPFLLDIQPNDVCLDMCASPGSKTAQMLVALGRHKVVPFNSDASPFPFQY 239

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK------------- 305
            S   V A ++  +R   L   + RL L          DA  +                 
Sbjct: 240 DSDGLVIANELDTKRANMLVHQVKRLRLLFPFALFTNHDARYFPEMSLQSQPGDADKTTA 299

Query: 306 ------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +L D  CS  GT+R+ P +       + +     Q ++ L+    ++ GG
Sbjct: 300 AGTEVLRFDKILCDVVCSGDGTLRKAPHIFKLWSPKEAINLQKLQIEIALRACHLLRVGG 359

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-------------A 406
            +V+S CSL+  ++E VV +++  +   + LV   +   +                    
Sbjct: 360 RLVYSTCSLNPVENEAVVAQIVHRTRGAMRLVDARALLPQLACAPGMTRWTVTDAKGCVF 419

Query: 407 LSPEGWIR--ITPDMLE-----------------KIDGVSSGMDGFFAVALRRLIQ 443
            +PEG +   + P                     ++        GFF   L ++ +
Sbjct: 420 PAPEGNMHEALFPPHTPGGYSSAAVDALDLSLCMRLFPTHCKGGGFFVAVLDKVSE 475


>gi|46136457|ref|XP_389920.1| hypothetical protein FG09744.1 [Gibberella zeae PH-1]
          Length = 988

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 83/235 (35%), Gaps = 56/235 (23%)

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK------------LFDAVLV 312
            + A D   +R   L   L RL      +   DA  +   +             FD +L 
Sbjct: 379 MLVANDSDYKRGHMLVHQLKRLSSPNLLVTNHDATQFPSIRLPAKDNKKPTYLKFDRILA 438

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           D PCS  GT+R++P +         +     Q ++L++ +  +K GG VVFS CS++  +
Sbjct: 439 DVPCSGDGTLRKNPAIWKDWQPGSALGLHLTQIRILVRALQLLKVGGRVVFSTCSMNPVE 498

Query: 373 SEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDMAMA 406
           +E VV   +     P  VE+V  ++                          WK ++    
Sbjct: 499 NESVVVSAIERCGGPANVEIVDCSNELPNLKRAPGMKDWKIMDKSARVWSSWKEVEDFAK 558

Query: 407 LSPEGWI----------RI-------TP-DMLEKIDGVSSGMDGFFAVALRRLIQ 443
            + EG I          R+        P +   ++        GFF   L +  +
Sbjct: 559 ENGEGVIPGRVVETMFPRLEGADCADLPLERCMRVYPHMQDTGGFFITVLEKKSE 613


>gi|292492483|ref|YP_003527922.1| transcription antitermination factor NusB [Nitrosococcus halophilus
           Nc4]
 gi|291581078|gb|ADE15535.1| transcription antitermination factor NusB [Nitrosococcus halophilus
           Nc4]
          Length = 150

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +    AR  +   L         +  +         F+     DQ   + ++    + 
Sbjct: 1   MSNNRSKARAAALQGLYQWQLTGQDVDTIDVGFI----FQGTRGIDQAYFQELLQGVPQQ 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
              +D  L   L   +         +LR+   ++L+  D+    V++ A+E AKR     
Sbjct: 57  QQALDECLGPFLDRPINEVDPVECTILRIGAFELLFRSDIPYRVVLNEAIELAKRF-GAE 115

Query: 119 HFAKLVNSILRR 130
           H  + VN IL +
Sbjct: 116 HGHRYVNGILDK 127


>gi|90080884|dbj|BAE89923.1| unnamed protein product [Macaca fascicularis]
          Length = 163

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 20/169 (11%)

Query: 285 RLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIV 338
           R  +   ++ E D     P          +L+D  CS +G   R        T     + 
Sbjct: 7   RAGISCCELAEEDFLAVSPSDPRYREVHYILLDPSCSGSGMPSRQLEEPGAGTPSPARLH 66

Query: 339 KSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
             A FQ++ L   ++F  +K    +V+S CSL ++++E+VV+  L+ +P    L P   A
Sbjct: 67  ALAGFQQRALCHALTFPSLK---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA 123

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
            W    ++     +  +R +P+             GFF   + R+  P+
Sbjct: 124 -WPHRGLSTFPGAKHCLRASPETTLSG--------GFFIAVIERVEAPR 163


>gi|330795541|ref|XP_003285831.1| hypothetical protein DICPUDRAFT_76769 [Dictyostelium purpureum]
 gi|325084210|gb|EGC37643.1| hypothetical protein DICPUDRAFT_76769 [Dictyostelium purpureum]
          Length = 460

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           KR++ K         L            Y    L+D V+VDA CS   +I     +  ++
Sbjct: 284 KRKINKRSSKKAIFDLKDLYFCNEFYMRYSSSTLYDKVIVDAECSLDASI--RHLIKHSK 341

Query: 333 D-----TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                  +   +    Q+ L+  G   VK GG +V+S CS  K+ +EE+VQ +L      
Sbjct: 342 MGRYYAPEKSKQLTELQKGLIDNGFKLVKVGGHLVYSTCSFCKEQNEEIVQFLLNKYKDS 401

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRI------TPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++L+P    + K  + +     E   +I       P+         +G  G F     ++
Sbjct: 402 IKLIPAFQEFEKDNNSSNKEDTEEECKIPYSIGYIPNTFR--FYPKNGTSGMFISKFEKI 459


>gi|300771943|ref|ZP_07081814.1| Nol1/Nop2/Sun family protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761329|gb|EFK58154.1| Nol1/Nop2/Sun family protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 392

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 133/432 (30%), Gaps = 76/432 (17%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
            +   +  L   + D+    +   D+ +   +     R                      
Sbjct: 26  NKEPFSRFLTQFFKDNKQ--MGSSDRRMTSRLCYNFFR---------------------- 61

Query: 81  SLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
                L  + AQ+     V     +           +     +L + +  ++       L
Sbjct: 62  -----LGTAAAQLPVTNRVVLAEFLCETESTVVSYYQPEWTPRLGDPVSDKIDFLVSLDL 116

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199
              + +    +            +  L +    I P       +       H L    + 
Sbjct: 117 INKSDLFPFQQHL------SAPIDTELFLQSQLIQPDLFIRLKRGSEAKVKHILTEAGVA 170

Query: 200 TGGIRLK----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
              +R +        ++  L G   G++ VQD S+   + L    +  S  D CAA GGK
Sbjct: 171 FENVRSQTLALRNGTNLQQLKG-LSGLYEVQDLSSQKTIDLIEAKDGESWWDACAASGGK 229

Query: 256 --TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFDA 309
                      K+   D+    L  L    D   +       +D          K+LFD 
Sbjct: 230 ALLFLDKYPSVKLLVSDIRMSILRNLDERFDLAGIKNYRKKVIDLTRDPLTILDKELFDG 289

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +++DAPCS +GT  R P+++       I   +  QR++    +  +KPG  +++  CS+ 
Sbjct: 290 IILDAPCSGSGTWGRTPEMISQFRESAIASFSVLQRQIAKNVLRHLKPGKTLLYITCSVF 349

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           K+++E+VV  +       +E +     Y +  D                           
Sbjct: 350 KEENEDVVNFICEHLGCELEEMVTLKGYEQQADT-------------------------- 383

Query: 430 MDGFFAVALRRL 441
               FA  LR+ 
Sbjct: 384 ---MFAARLRKK 392


>gi|255530906|ref|YP_003091278.1| Fmu (Sun) domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255343890|gb|ACU03216.1| Fmu (Sun) domain protein [Pedobacter heparinus DSM 2366]
          Length = 387

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 35/228 (15%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRL 276
           A   + VQD S+      F         D CAA GGK      +    ++   DV +  L
Sbjct: 188 AHKQYQVQDLSSQQTGSFFKPQAWDKWWDCCAASGGKSLLLYDLEPKVELLVSDVRESSL 247

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
             L     +  L       +D             FD +L+DAPCS +GT  R P++L+  
Sbjct: 248 HNLDERFQQAGLKKYQKKVLDLLQNNEQDLHHYEFDGILLDAPCSGSGTWGRTPEMLYYF 307

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
           +   I   +  Q+K+    + ++K G  +++  CS+ K+++E+VV  +L + P+ +E + 
Sbjct: 308 EDHKISYFSGLQKKIAANVVKYLKEGKPLIYITCSVFKEENEDVVAFLLENLPLKLEKMQ 367

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   Y    D                               F   L +
Sbjct: 368 VIKGYAAKADT-----------------------------MFVARLIK 386


>gi|239827671|ref|YP_002950295.1| transcription antitermination protein NusB [Geobacillus sp. WCH70]
 gi|239807964|gb|ACS25029.1| NusB antitermination factor [Geobacillus sp. WCH70]
          Length = 133

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  +   L  V    I     L    G              +R +V       
Sbjct: 1   MMKRHEAREKALQALFQVDVGHIPPEEALQNVTGGKEVD-------PFLRQLVIGVTEHQ 53

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             IDA+L   L   +L R     + +LR++  ++ Y  DV     +D AVE AK+  + +
Sbjct: 54  EEIDALLRANLEKWTLERVANVDRAILRMATYEMKYVDDVPVKVSLDEAVELAKKFGDTK 113

Query: 119 H 119
            
Sbjct: 114 S 114


>gi|56420932|ref|YP_148250.1| transcription antitermination protein NusB [Geobacillus
           kaustophilus HTA426]
 gi|297529436|ref|YP_003670711.1| NusB antitermination factor [Geobacillus sp. C56-T3]
 gi|81557844|sp|Q5KXA4|NUSB_GEOKA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56380774|dbj|BAD76682.1| transcription termination factor [Geobacillus kaustophilus HTA426]
 gi|297252688|gb|ADI26134.1| NusB antitermination factor [Geobacillus sp. C56-T3]
          Length = 130

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +   RI     L    G              +R +V   +   
Sbjct: 1   MK-RHEAREKALQALFQIDVGRIPPDEALHNVTGGGDID-------PFLRQLVFGVVEHQ 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID +L   L   +L R     + +LR++  ++ Y  DV     +D AVE AK+  + +
Sbjct: 53  EEIDELLRANLEKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELAKKFGDWK 112

Query: 119 HFA 121
             +
Sbjct: 113 SGS 115


>gi|324513565|gb|ADY45571.1| Methyltransferase [Ascaris suum]
          Length = 438

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 154/458 (33%), Gaps = 49/458 (10%)

Query: 12  SHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L         +   L+ E    S+    S +++  +  +   T+R+   +D +L+  
Sbjct: 1   MDALY--YESAAVVKQALNREKSVRSSVYSSSYKNKKRLLRLCCETIRYRAFLDGLLECA 58

Query: 71  LISSLPRKKYS-LQQLLRVSVAQILY----------LDVADYAVVDLAVEQAKRDKENRH 119
            I +L + +      LL V + + L+          L     +   +  +QA++      
Sbjct: 59  QIRALLKNEVISDFYLLYVLLYEFLFGRGLRNIDKRLSSPILSAAMIIRKQAEK-LTEAG 117

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
                       +       +         +  K   E  +  + +  ++D      Y++
Sbjct: 118 RGIKEERSESGRTWVIPRYARVNTIKWTFEDALKALKEEEWIVKEMDDVTDGSTYRAYVE 177

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
                ++         V      + +      + S     +G   +QD ++ +   L   
Sbjct: 178 NMEWNEV--------YVDPHIENLLIFRGDADLHSYWMVVDGYVLLQDKASCLSALLLKP 229

Query: 240 LNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                V D+CAAPG KT+ +        KV A+D S  R+E LR  L    +    I   
Sbjct: 230 KPGCEVFDVCAAPGMKTSHIAALLSGRGKVWAMDKSAERVETLRAMLQNAGVSNVSIFCG 289

Query: 297 DA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT---RDTDDIVKSACFQRKLLL 349
           D                 LVD PCS +G ++R    +      D   +   +  Q  +L 
Sbjct: 290 DFLRVDVFDKKFAKVRYALVDPPCSGSGIVKRLDKFIDDANGVDERRLQALSNLQAMILK 349

Query: 350 QGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAM 405
             +    ++    +V+S CS+  +++E VV++VL         ELV     +    D   
Sbjct: 350 HAMKLPNLR---RLVYSTCSIHTEENEAVVEEVLNDEHIKEDFELVHAMPGWSHRGDQQY 406

Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
               E  +R +P             +GFF    R+  +
Sbjct: 407 EFG-EKCLRASP--------ALDLTNGFFVAVFRKKRK 435


>gi|119600300|gb|EAW79894.1| NOL1/NOP2/Sun domain family, member 3, isoform CRA_b [Homo sapiens]
          Length = 336

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL  
Sbjct: 107 KKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLRW 166

Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331
           LR      + +  +    + E+D       +   FD VLVDAPCS+  +          +
Sbjct: 167 LRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAS 226

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                       Q +LL   I  ++PGGI+V+S C+L K ++++V+ ++L S    + + 
Sbjct: 227 CRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPMD 286

Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A   S D   A + +   + + PD  +            +   L++
Sbjct: 287 IKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 329


>gi|11545785|ref|NP_071355.1| putative methyltransferase NSUN3 [Homo sapiens]
 gi|74733593|sp|Q9H649|NSUN3_HUMAN RecName: Full=Putative methyltransferase NSUN3; AltName:
           Full=NOL1/NOP2/Sun domain family member 3
 gi|10439061|dbj|BAB15417.1| unnamed protein product [Homo sapiens]
 gi|18088290|gb|AAH20602.1| NOL1/NOP2/Sun domain family, member 3 [Homo sapiens]
 gi|119600299|gb|EAW79893.1| NOL1/NOP2/Sun domain family, member 3, isoform CRA_a [Homo sapiens]
          Length = 340

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL  
Sbjct: 111 KKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLRW 170

Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331
           LR      + +  +    + E+D       +   FD VLVDAPCS+  +          +
Sbjct: 171 LRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAS 230

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                       Q +LL   I  ++PGGI+V+S C+L K ++++V+ ++L S    + + 
Sbjct: 231 CRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPMD 290

Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A   S D   A + +   + + PD  +            +   L++
Sbjct: 291 IKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333


>gi|283852982|ref|ZP_06370240.1| Fmu (Sun) domain protein [Desulfovibrio sp. FW1012B]
 gi|283571592|gb|EFC19594.1| Fmu (Sun) domain protein [Desulfovibrio sp. FW1012B]
          Length = 427

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 21/272 (7%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASASI 232
           +    ++      L A                IV+ P           G   +QD S+ +
Sbjct: 23  VCSPSEVPLVEALLGATGHVAEPEPFSPWCRRIVAEPTALGASLAARFGCIHIQDRSSML 82

Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           P  L        VLD+CAAPGGKT  L         V   + S  RL  LR  L R  L 
Sbjct: 83  PPLLLDPPAGARVLDMCAAPGGKTGFLAQLVGPTGFVLGNEPSPDRLATLRQTLFRESLA 142

Query: 290 AEDII-EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
                 + D   + P+  F  +L+D PCS  GT+ ++P        + +      QRKLL
Sbjct: 143 NAATCSQADLSPHLPEGAFTHILLDPPCSGWGTLDKNPQAAKIWSGEKVAPLIALQRKLL 202

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
               + + PGG +++S C+ +  ++E+  +  L S P+    +   + +         +S
Sbjct: 203 ATAANLLAPGGRLLYSTCTTNVAENEDQTRFALESLPLVPVPLAPPAGFVFEAPRRDDVS 262

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             G +R+        D  +S   GF+     +
Sbjct: 263 --GVLRV--------DSAASAAQGFYMAFFEK 284


>gi|157374416|ref|YP_001473016.1| transcription antitermination protein NusB [Shewanella sediminis
           HAW-EB3]
 gi|189035907|sp|A8FSR5|NUSB_SHESH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157316790|gb|ABV35888.1| NusB antitermination factor [Shewanella sediminis HAW-EB3]
          Length = 134

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +      +   + +   D    R +++ T  
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QKIDGIDVAYFRELLSGTAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +ID  +   +           + +LR++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KQAQIDEQIIPHIERPYNEVSPIEKAVLRLATYELTFRKDVPYKVAINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN IL +
Sbjct: 117 EDGHKFVNGILDK 129


>gi|71425173|ref|XP_813031.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70877878|gb|EAN91180.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 949

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 95/285 (33%), Gaps = 67/285 (23%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------------K 265
            E +   Q  S+ +PV L       +VLDLCA+PG KT  +                   
Sbjct: 294 NERLISFQSTSSMLPVLLLDPRPGEAVLDLCASPGSKTTLIHDYMFGISSSSKSLLATGC 353

Query: 266 VTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTG 320
           + A D    R   L   L       A   I+   F   P       +D VLVDAPCS  G
Sbjct: 354 IVANDAIFSRRRTLSQRLQSFSPSIAVTQIQGQTFPAQPIASGGVRYDKVLVDAPCSGEG 413

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            + R             ++    Q  LL   +     GG VV+S C+L+  ++E V+  V
Sbjct: 414 RMHRDVMSWRMWHPLKAMEFFTTQVSLLRHAVELCAAGGCVVYSTCTLNPLENEAVISTV 473

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALS-------------------------------P 409
           L    + +   P           +  LS                               P
Sbjct: 474 LADGEVELIRPPHFMTADSGWHFSRGLSHWLVPSRAGGFLHTFAEAEAKGEETAVELFPP 533

Query: 410 EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           EG            +R+ P         +SG +GFF  ALR++ Q
Sbjct: 534 EGNGEIQKALESCCLRVLPHR-------NSGAEGFFLAALRKVQQ 571


>gi|198419141|ref|XP_002127214.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 [Ciona
           intestinalis]
          Length = 445

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 104/277 (37%), Gaps = 52/277 (18%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDV 271
           L        + Q+  + I   +        VLD+CAAPGGKT+ ++       ++ A+D 
Sbjct: 166 LNDVLPSKIFAQNLPSIIVGHVLNPQEGDIVLDMCAAPGGKTSHIVSLLRGRGRLVAVDR 225

Query: 272 SKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKK-------------LFDAVLVDAPC 316
           S  ++EK++ N  +L   A    +   D+   C                 FD +L+DAPC
Sbjct: 226 SSSKVEKIKQNAAKLGQMADVLTVFTADSRKLCSDDSGDKSEENKFSSSYFDKILLDAPC 285

Query: 317 SSTG---TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
           S+ G              +   +I      QR+L    +  +KPGG +V+S C+    ++
Sbjct: 286 SALGQRPKCWLENQSNVNK-MKNIKSYPALQRQLFNTAVRLLKPGGTLVYSTCTTTVDEN 344

Query: 374 EEVVQKVLRSSP--------------IPVELVPLNSAYWKSIDMAMALSPEGWIR----- 414
           E +V+  L   P                 E+  L+ +   S+      SP   ++     
Sbjct: 345 EGLVEWALDKHPCLKLSQHTPHIGGTGRQEVTNLSPSNLHSLQYFTPGSPVTCVQEHHNV 404

Query: 415 -ITPDMLEKIDGVSSGMD----------GFFAVALRR 440
              P +   +  +++ +D          GFF     +
Sbjct: 405 HTIPKLSNNVPSLTNLLDLEAECNQDSIGFFIAKFIK 441


>gi|213027404|ref|ZP_03341851.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 211

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  QR+LL      ++PGG +V+S C+L++Q++E V   +  +    VE +PL   +   
Sbjct: 3   AATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP-- 60

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            D   AL+PEG++ + P + +          GFF   LR++
Sbjct: 61  -DADRALTPEGFLHVFPQIYDCE--------GFFVARLRKM 92


>gi|330815784|ref|YP_004359489.1| NusB antitermination factor [Burkholderia gladioli BSR3]
 gi|327368177|gb|AEA59533.1| NusB antitermination factor [Burkholderia gladioli BSR3]
          Length = 144

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    S   +     G   +    + D+ L+  IV   +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNASTGEIDAQLRGAQGY---EKADRELLETIVYGVVR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               + A+L   L   + +     + +L ++  ++ +  +     V++ A+E  K    +
Sbjct: 58  EHADLAAILAPNLDRPIEQLSPVERAVLLMATFELKHQIETPYRVVINEAIELTKTFGGS 117

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 118 DG-HKYVNGVLDK 129


>gi|260942277|ref|XP_002615437.1| hypothetical protein CLUG_04319 [Clavispora lusitaniae ATCC 42720]
 gi|238850727|gb|EEQ40191.1| hypothetical protein CLUG_04319 [Clavispora lusitaniae ATCC 42720]
          Length = 479

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 140/425 (32%), Gaps = 39/425 (9%)

Query: 49  VRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQ-LLRVSVAQILYLDVADYAVVDL 106
           V A+V  TL++   I+ +L    +  S   KK  ++  LL + +   L+           
Sbjct: 55  VYALVISTLKYKEYIEEILRKSKIQQSPEIKKLKMKDSLLMLMIHDFLFSAKGRIQSGKH 114

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
            +++A    + R  A+L    L+       +L  +             R+          
Sbjct: 115 PMKEAFLLNKTRLQAELTKLKLKHKVTSVEKLPLKEGIDEDETPVRWIRINTIKINSEQF 174

Query: 167 AISDACISPLYIDLTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225
               +  S     L     I       +         +      E I S P + +G   +
Sbjct: 175 FKKHSFFSQ----LEPVSSIAEITQPGVIYHDEHIQNLYGLHPREKITSTPAYLQGEIII 230

Query: 226 QDASASIPV---QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279
           QD ++  P           +  V+D CAAPG KT      +     V A +   RR++ L
Sbjct: 231 QDRASCFPAEILNNDPNDVHSEVIDACAAPGNKTTHAASFVGPKGVVYAFERDNRRVKVL 290

Query: 280 RCNLDRLHLYA----EDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRR-------HP 326
           +   ++    A          D     P        ++VD  CS +G   R         
Sbjct: 291 KTMCEKATGKAKKSLIHPTHADFTTIAPSDFPSVTGMIVDPSCSGSGIFGRAIEDANSQE 350

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----- 381
                 DT+ + K A FQ K++   +SF K    VV+S CS+   ++E VV  +L     
Sbjct: 351 QAREEIDTERLNKLAGFQFKIMKHALSFPKVH-KVVYSTCSIHPHENERVVVDLLSDAEI 409

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALS------PEGWIRITPDMLEKIDGVSSGMDGFFA 435
           +     +E        W+        S       E  + +    +  +     G  GFFA
Sbjct: 410 QKQGWKLEKRQFVIPSWERRGWEQEFSSLCDGDKEKCLEMAGGCVRSV-PKEDGGIGFFA 468

Query: 436 VALRR 440
               R
Sbjct: 469 ACFVR 473


>gi|115524819|ref|YP_781730.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisA53]
 gi|115518766|gb|ABJ06750.1| NusB antitermination factor [Rhodopseudomonas palustris BisA53]
          Length = 174

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      L  +            +        +    + IV+  +R  
Sbjct: 30  AARLAAVQALYQMEVGGAGLNDIFAEFESHWLGHEVEGEQYLPAEAAFFQDIVSGVVRDQ 89

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            ++D ++D  L     L R +  L+ ++R    ++ +  DV    VV   V+ A    E 
Sbjct: 90  LQLDPLIDEALSRGWPLARIEAILRAVMRAGAYELQHRKDVPARVVVSEYVDVANAFVEG 149

Query: 118 RHFAKLVNSILRRVSREKIE 137
                +VN++L +++R+   
Sbjct: 150 DE-TGMVNAVLDQIARQFRP 168


>gi|89099252|ref|ZP_01172130.1| transcription antitermination protein NusB [Bacillus sp. NRRL
           B-14911]
 gi|89086098|gb|EAR65221.1| transcription antitermination protein NusB [Bacillus sp. NRRL
           B-14911]
          Length = 130

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +   +   +  +D                  +  +V   L   
Sbjct: 1   MKRRT-AREKALQALFQIDVSQADPSEAIDHVLEGEEGDE-------YLTLVVTGVLENK 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID+++   L    L R     + LLR  V ++ Y  +V    V+D A+E AK    + 
Sbjct: 53  EEIDSLIKQYLEKWKLERLATVDRNLLRQGVYELKYSKEVPANVVIDEAIEIAK-IFGDD 111

Query: 119 HFAKLVNSILRR 130
           + ++ +N +L +
Sbjct: 112 NSSRFINGVLSK 123


>gi|317122010|ref|YP_004102013.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885]
 gi|315591990|gb|ADU51286.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885]
          Length = 237

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 8/126 (6%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            ++  +L         L   L+   G+       +        +     R    ID ++ 
Sbjct: 18  EIALQVLFQWEAAGNPLEAGLEWAAGEYDP---GEEVLAFAAELCRGVTRRRLDIDGLIA 74

Query: 69  FVL-ISSLPRKKYSLQQLLRVSVAQILYL---DVADYAVVDLAVEQAKRDKENRHFAKLV 124
                  L R     + +LR+ + ++LY    DV     ++ AVE AKR   +   A+ V
Sbjct: 75  RYARDWDLERLARVDRNVLRLGIYELLYAGRPDVPPPVAINEAVELAKRY-SSEDAARFV 133

Query: 125 NSILRR 130
           N IL +
Sbjct: 134 NGILGQ 139


>gi|307546178|ref|YP_003898657.1| transcription antitermination protein NusB [Halomonas elongata DSM
           2581]
 gi|307218202|emb|CBV43472.1| transcription antitermination protein NusB [Halomonas elongata DSM
           2581]
          Length = 166

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ----------RDQILVRA 51
           +S   AR ++   L        S+  +     G  A   L             D  L   
Sbjct: 13  QSRRAARELAVQGLYQWEMTGKSVATVEAEFRGQVADEDLEDHENWHKVMELADLALFHE 72

Query: 52  IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110
           +++   +   +ID  L  VL   L         +LR+   ++ Y L+V   AV++  VE 
Sbjct: 73  LLSGVAQHCEKIDEQLAPVLDRRLEDLDAIELAILRLGTYELAYRLEVPYRAVINEGVEL 132

Query: 111 AKRDKENRHFAKLVNSILRR 130
           AK         + VN IL +
Sbjct: 133 AKSFGATEG-HRYVNGILDK 151


>gi|34783691|gb|AAH57238.1| NOL1/NOP2/Sun domain family, member 3 [Homo sapiens]
 gi|312151190|gb|ADQ32107.1| NOL1/NOP2/Sun domain family, member 3 [synthetic construct]
          Length = 340

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 17/230 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL  
Sbjct: 111 KKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLRW 170

Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331
           LR      + +  +    + E+D       +   FD VLVDAPCS+  +          +
Sbjct: 171 LRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAS 230

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                       Q +LL   I  ++PGGI+V+S C+L K ++++V+ ++L S    + + 
Sbjct: 231 CRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPMD 290

Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   S D   A + +   + + PD  +            +   L++
Sbjct: 291 IKGIVRTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333


>gi|56118835|ref|NP_001007930.1| putative methyltransferase NSUN4 [Xenopus (Silurana) tropicalis]
 gi|82181511|sp|Q66KI9|NSUN4_XENTR RecName: Full=Putative methyltransferase NSUN4; AltName:
           Full=NOL1/NOP2/Sun domain family member 4
 gi|51512985|gb|AAH80376.1| NOL1/NOP2/Sun domain family, member 4 [Xenopus (Silurana)
           tropicalis]
 gi|89271355|emb|CAJ83825.1| NOL1/NOP2/Sun domain family, member 4 [Xenopus (Silurana)
           tropicalis]
          Length = 406

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 110/277 (39%), Gaps = 29/277 (10%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLP-----GFAEGVWWVQDASASIPVQLFGTLN 241
           +T A  L + +  T     K     I   P      F    +++ DA++ +PV      +
Sbjct: 136 KTQATNLLSSLSNTKLTCFKFSRGDISRFPQSRSDSFGLLEYYLMDAASLLPVLALDVQH 195

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLDRLHLYA------EDI 293
             SVLDLCAAPGGKT  L+ +       A D+S  R  +L   L      A        I
Sbjct: 196 GHSVLDLCAAPGGKTLALLQTENCQYLAANDLSTSRSSRLHRVLRSYVPRAQRTEHKVCI 255

Query: 294 IEMDA--FDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
              D   +       +D VLVD PC++     +    ++     T         Q +LL+
Sbjct: 256 TSQDGRLWGDAEANTYDRVLVDVPCTTDRHSLLEEENNIFHRIRTKQRQMLPLLQAELLV 315

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMAL 407
            G+  V+PGG VV+S CSL +  +E VV++   L +S   V + P + + ++ +      
Sbjct: 316 AGLRAVRPGGEVVYSTCSLSQLQNECVVERAVELAASDHGVHVKPQDLSCFREVFKNTFN 375

Query: 408 SPEGWI---RITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +G      + P +              F   L R+
Sbjct: 376 FFQGCRVGELVLPHLTANFGP-------MFFCKLLRI 405


>gi|27380139|ref|NP_771668.1| transcription antitermination protein NusB [Bradyrhizobium
           japonicum USDA 110]
 gi|32171616|sp|Q89K81|NUSB_BRAJA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27353293|dbj|BAC50293.1| N-utilization substance protein B [Bradyrhizobium japonicum USDA
           110]
          Length = 165

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  +            +        +    R +V+  +R  
Sbjct: 21  AARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDTYLPAEAAFFRDVVSGVVRDQ 80

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            ++D ++D  L     L R +  L+ +LR    ++ +  DV    VV   V+ A     +
Sbjct: 81  KKLDPLIDEALSKGWPLKRIEAILRAVLRAGAYELQHRKDVPGRVVVSEYVDVANAFV-D 139

Query: 118 RHFAKLVNSILRRVSREK 135
           R    +VN++L ++ R+ 
Sbjct: 140 REETGMVNAVLDQIGRQF 157


>gi|149194728|ref|ZP_01871823.1| N utilization substance protein B [Caminibacter mediatlanticus
           TB-2]
 gi|149135151|gb|EDM23632.1| N utilization substance protein B [Caminibacter mediatlanticus
           TB-2]
          Length = 136

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  +AR      L             ++        R +  +     + ++N  L  +
Sbjct: 1   MATITHAREAVIQTLYAKELGN---DDAINQFDELLKERKIKGQKAEFAKKLLNGVLEHI 57

Query: 61  PRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID ++ + ++  S  R     +Q+LR  + +I Y D     V+D AV+ AK   E++ 
Sbjct: 58  NEIDEIIKNHLIDWSFDRLDKVDKQILRTGIYEIKYTDTPYQIVIDEAVKIAKNFSEDKS 117

Query: 120 FAKLVNSILRR 130
               +N IL +
Sbjct: 118 -KNFINGILDK 127


>gi|146104384|ref|XP_001469810.1| hypothetical protein [Leishmania infantum]
 gi|134074180|emb|CAM72922.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322503582|emb|CBZ38668.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 767

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 98/296 (33%), Gaps = 75/296 (25%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------------------I 260
              Q+  + IP  L         LD+CA+PG KTAQ+                       
Sbjct: 180 ISRQEEVSMIPPFLLDIQPTDVCLDMCASPGSKTAQMLVALGRHKVVPFDSDASPFPFQY 239

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK------------- 305
            S   V A ++  +R   L   + RL L          DA  +                 
Sbjct: 240 DSDGLVIANELDTKRANMLVHQVKRLRLLFPFALFTNHDARYFPEMSLQPQPGDADKTTA 299

Query: 306 ------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +L D  CS  GT+R+ P +       + +     Q ++ L+    ++ GG
Sbjct: 300 AGTQVLRFDKILCDVVCSGDGTLRKAPHIFKLWSPKEAINLQKLQIEIALRACHLLRVGG 359

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-------------A 406
            +V+S CSL+  ++E VV +++  +   + LV   +   + +                  
Sbjct: 360 RLVYSTCSLNPVENEAVVAQIVYRTRGAMRLVDARALLPQLVCAPGMTRWTVTDAKGRVF 419

Query: 407 LSPEGWIR--ITPDMLE-----------------KIDGVSSGMDGFFAVALRRLIQ 443
            +PEG +   + P                     ++        GFF   L ++ +
Sbjct: 420 PAPEGNMHEALFPPHTPGGYSSAAVDALDLSLCMRLFPTHCKGGGFFVAVLDKVSE 475


>gi|256425787|ref|YP_003126440.1| Fmu (Sun) domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040695|gb|ACU64239.1| Fmu (Sun) domain protein [Chitinophaga pinensis DSM 2588]
          Length = 386

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRL 276
            +  + +QDAS+     LF         D CAA GGK+        G K+   DV    +
Sbjct: 186 DKSWYEIQDASSQQVGALFTPKAGELWWDSCAASGGKSILLLDKQPGVKLLVSDVRASII 245

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           + L        +   + I MD            +LFD +++DAPCS +GT  R P+ +  
Sbjct: 246 QNLHQRFKEAGIRQYESIVMDLTAPVTSSAIKDRLFDHIILDAPCSGSGTWGRTPENMSF 305

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
                I +    Q+K+    +  +KPGG +++  CS+ +Q++EEVV   L  
Sbjct: 306 FTEKQITEYQQLQQKIAANIVHLLKPGGTLIYITCSVFRQENEEVV-AFLEK 356


>gi|154345848|ref|XP_001568861.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066203|emb|CAM43993.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 761

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 32/169 (18%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L D  CS  GT+R+ P +       + +     Q ++ L+    ++ GG +V+S C
Sbjct: 306 FDKILCDVVCSGDGTLRKAPHIFKIWSPREAINLQKLQIEIALRACHLLRVGGRLVYSTC 365

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS-------------PEGWI 413
           SL+  ++E VV +++  +   + LV       + +      +             PEG +
Sbjct: 366 SLNPVENEAVVTQIVHRTRGALRLVDARPLLPRLVCAPGMTTWTVTDASGRVFAAPEGNM 425

Query: 414 R--ITPDMLE-----------------KIDGVSSGMDGFFAVALRRLIQ 443
              + P                     ++        GFF   L ++ +
Sbjct: 426 HEALFPPHTPGGYSSTAVDALDLSLCMRLFPTHCKGGGFFVAVLDKVSE 474


>gi|227540221|ref|ZP_03970270.1| Fmu (Sun) domain protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239945|gb|EEI89960.1| Fmu (Sun) domain protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 390

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 140/433 (32%), Gaps = 78/433 (18%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80
            +   +  L   + D+    +   D+ +   +     R                      
Sbjct: 24  NKEPFSRFLTQFFKDNKQ--MGSSDRRMTSRLCYNFFR---------------------- 59

Query: 81  SLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
                L  +  Q+   D V     +           +    ++L + +  ++       L
Sbjct: 60  -----LGTAATQLSVTDRVVLAEFLCETESTVVSYYKPDWTSRLGDPVSDKIDFLVGLDL 114

Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-TWAHKLNAVML 198
              + +  + +     ++             + +    + + +K   E    H L    +
Sbjct: 115 INRSDLFPLQQHLSAPID-------TELFLQSQLVQPDLFIRLKRGSEAKVKHILTEAEV 167

Query: 199 PTGGIRLK----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
               IR          ++  L G   G++ VQD S+   + L    +  S  D CAA GG
Sbjct: 168 TFENIRPHTLALRNGTNLQQLKG-LSGLYEVQDLSSQKTIDLIEAKDGESWWDACAASGG 226

Query: 255 K--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFD 308
           K           K+   D+    L  L    D   +       +D          K+LFD
Sbjct: 227 KALLFLDKYPSVKLLVSDIRMSILRNLDERFDFAGIKNYRKKVIDLTRDPLTILDKELFD 286

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            +++DAPCS +GT  R P+++       I   +  QR++    +  +KPG  +++  CS+
Sbjct: 287 GIILDAPCSGSGTWGRTPEMISQFKESAIENFSVLQRQIAKNVLRHLKPGKTLLYITCSV 346

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
            K+++E+VV   +                    ++   ++ +G+ +              
Sbjct: 347 FKEENEDVVN-FISEH--------------LGCELEEMVTLKGYEQ-------------- 377

Query: 429 GMDGFFAVALRRL 441
             D  FA  LR+ 
Sbjct: 378 QADTMFAARLRKK 390


>gi|325104657|ref|YP_004274311.1| Fmu (Sun) domain protein [Pedobacter saltans DSM 12145]
 gi|324973505|gb|ADY52489.1| Fmu (Sun) domain protein [Pedobacter saltans DSM 12145]
          Length = 387

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 133/436 (30%), Gaps = 64/436 (14%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              +    ++   L   L   Y  +    +  RD+ +   ++    R    ++ +     
Sbjct: 10  VQNILASYKEDQPLHRFLTQFYKRNKQ--MGSRDRKISSQLIYNYYRMGKALEQL----- 62

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
              L           R+ VA+ L              +    D     + K ++S +   
Sbjct: 63  --PLQD---------RLVVAEFL----------CNQEKSTYLDYYKPEWVKYLSSPISEK 101

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
             +  E     +   + P             E + +        + +  +   D E    
Sbjct: 102 IDKVKESYPTFSMNDVFPFSEH-LSTEVNKGEFIESQFVQPDLFVRVKRSATADFEFRLR 160

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +          I       + +      +G + VQD S+     +F         D CAA
Sbjct: 161 QQEVSYKKLSEITYAFKNGAKLDQIILDKGSFEVQDLSSQKVGDVFKPQRWDKWWDCCAA 220

Query: 252 PGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKK 305
            GGK+          K+   D+ +  LE L+       +       +D            
Sbjct: 221 SGGKSLMLLDEQPDIKLLVSDIRESILENLKERFIEAGIKGFQAKVLDLTQNPAVFLHDY 280

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD +++DAPCS +GT  R P+++       I      QRK+    I F+K G  +++  
Sbjct: 281 EFDGIILDAPCSGSGTWGRTPEMIAQFSKSKISFFRDLQRKIASNVIPFLKQGKPLIYIT 340

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+ K+++EE    + +   + +E                               + I G
Sbjct: 341 CSVFKEENEEQTDWLCKQFGLTLE-----------------------------SQQIIKG 371

Query: 426 VSSGMDGFFAVALRRL 441
                D  F   L ++
Sbjct: 372 YKDKADSMFVARLLKV 387


>gi|322490211|emb|CBZ25472.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1168

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 59/195 (30%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +D VLVDAPCS  G + R             ++    Q  LL + +   K GG +V++ C
Sbjct: 523 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRIVYATC 582

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------- 413
           +L+  ++E VV  VLR+    VEL+P      +  ++       G +             
Sbjct: 583 TLNPLENEAVVAAVLRACGGAVELIPPPRPLPRRTELQTEEDSGGSVPPLCLTAGLRSWD 642

Query: 414 -----------------------RITPDML----------------------EKIDGVSS 428
                                  R+ PDM                        ++    +
Sbjct: 643 VPSGAGGFLRSAAEAYAQGESAARLPPDMFAPGSVGAEGDRADISGALQRCCRRVMPHLN 702

Query: 429 GM-DGFFAVALRRLI 442
           G  DGFF   L +  
Sbjct: 703 GNADGFFVAVLEKRA 717


>gi|297802108|ref|XP_002868938.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314774|gb|EFH45197.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 628

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 77/255 (30%), Gaps = 77/255 (30%)

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--------------- 306
               V A DV  +R   L     R       +   +   +                    
Sbjct: 59  PNGMVVANDVDYKRCNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASEINPHPI 118

Query: 307 ----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD VL D PCS  GT+ R    +W R++         Q  L ++ +S +K GG ++
Sbjct: 119 DQLLFDRVLCDVPCSGDGTL-RKAPDIWRRNSGSGNGLHSLQVVLAMR-LSLLKVGGRMI 176

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA------------------ 404
           +S CS++  + E VV ++LR     VELV ++    + I                     
Sbjct: 177 YSTCSMNPIEDEAVVAEILRRCGCSVELVDVSDKLPELIRRPGLTKWKVHDRGGWYRSYK 236

Query: 405 --MALSPEGWIR-ITP-----------------------------------DMLEKIDGV 426
                  +G +R + P                                   +   +I   
Sbjct: 237 DVPKSQRDGVLRSMFPSGKSDKDSTGGGNSYEEMAYISSEESAVEVCDLPLERCMRILPH 296

Query: 427 SSGMDGFFAVALRRL 441
                GFF   L ++
Sbjct: 297 DQNTGGFFIAVLHKV 311


>gi|261417744|ref|YP_003251426.1| transcription antitermination protein NusB [Geobacillus sp.
           Y412MC61]
 gi|319767444|ref|YP_004132945.1| NusB antitermination factor [Geobacillus sp. Y412MC52]
 gi|261374201|gb|ACX76944.1| NusB antitermination factor [Geobacillus sp. Y412MC61]
 gi|317112310|gb|ADU94802.1| NusB antitermination factor [Geobacillus sp. Y412MC52]
          Length = 130

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +   RI     L    G              +R +V   +   
Sbjct: 1   MK-RHEAREKALQALFQIDVGRIPPDEALHNVTGGGDID-------PFLRQLVFGVVEHQ 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID +L   L   +L R     + +LR++  ++ Y  DV     +D AVE AK   + +
Sbjct: 53  EEIDELLRANLEKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELAKTFGDWK 112

Query: 119 HFA 121
             +
Sbjct: 113 SGS 115


>gi|118384004|ref|XP_001025155.1| NOL1/NOP2/sun family protein [Tetrahymena thermophila]
 gi|89306922|gb|EAS04910.1| NOL1/NOP2/sun family protein [Tetrahymena thermophila SB210]
          Length = 1153

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 22/208 (10%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------TAL 269
             G+   Q+  + +P  L     +  + D+CAAPG KTAQL+                A 
Sbjct: 235 DSGLISRQELVSMLPPLLLDVKPDDIIFDMCAAPGSKTAQLLELMYTQGGINTKGAVVAN 294

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCS 317
           DV ++R   L   + R++     +I   A  +              K  FD V  D PCS
Sbjct: 295 DVDQKRAYLLTHQVCRINPSGLVVINHPAQFFPTLQDPTSNQAYDQKFYFDKVQADVPCS 354

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
             G  R+ P      +T D       Q  +L + ++  K GG V++S CS++  + E V+
Sbjct: 355 GDGATRKIPTQWRNWNTRDGQVLHPLQLAILQRALTLCKVGGYVLYSTCSINPIEDEAVI 414

Query: 378 -QKVLRSSPIPVELVPLNSAYWKSIDMA 404
            +   R+S   +EL+ +++ + +     
Sbjct: 415 TEAFRRASQGSIELIDIHTKFPELKGRR 442


>gi|307111656|gb|EFN59890.1| hypothetical protein CHLNCDRAFT_132901 [Chlorella variabilis]
          Length = 585

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P   FD VL DAPC++ G     P ++  +   ++ ++A +QRKLL   ++ V+PGG +
Sbjct: 443 FPPASFDHVLCDAPCTALGL---RPRLVHRQTLRELDQTAAYQRKLLRVAVALVRPGGAL 499

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFS CS++  ++E  V+ +L + P    +          +   + L      ++  +   
Sbjct: 500 VFSTCSINPGENEANVRWLLDTFPGMRLVQQAPRLGQPGLTGNVVLPCGRTQQLLSEKEA 559

Query: 422 KIDGVSS-----GMDGFFAVALRR 440
            +             GFF     +
Sbjct: 560 ALVQRFDPSAPLDTIGFFVAKFEK 583


>gi|238026450|ref|YP_002910681.1| transcription antitermination protein NusB [Burkholderia glumae
           BGR1]
 gi|237875644|gb|ACR27977.1| NusB antitermination factor [Burkholderia glumae BGR1]
          Length = 145

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    S   +     G   +    + D+ L+  I+   +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNASTGEIDAQLRGAQGY---DKADRELLETILYGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               + AVL   L   L +     + +L ++  ++ +  +     V++ AVE  K    +
Sbjct: 58  EHADLAAVLTPCLDRPLEQLSPVERAVLLIATFELKHQIETPYRVVINEAVELTKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|194364362|ref|YP_002026972.1| transcription antitermination protein NusB [Stenotrophomonas
           maltophilia R551-3]
 gi|238693436|sp|B4SJC1|NUSB_STRM5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194347166|gb|ACF50289.1| NusB antitermination factor [Stenotrophomonas maltophilia R551-3]
          Length = 159

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   +        +   L+     + A  +    D     A+++  L     ID  
Sbjct: 27  ARRRAVQAIYAWQISGGNAQSLIAQFAHEQAREI---ADLAYFEALMHGVLDNRRDIDEA 83

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L   +       + +LR++  ++ Y LDV    V++ A+E AKR   + H    VN
Sbjct: 84  LGPYLDRGIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAKRF-GSEHGHTYVN 142

Query: 126 SILRR 130
            +L R
Sbjct: 143 GVLDR 147


>gi|83282478|ref|XP_729788.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488576|gb|EAA21353.1| similar to yeast ncl1-related [Plasmodium yoelii yoelii]
          Length = 1154

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 96/312 (30%), Gaps = 52/312 (16%)

Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +           K   V  P     + +   +I+    + +  +     +       + 
Sbjct: 246 SIDTFHSAMENPKKEIDVQDPINEENIYKTYYNILENNLYDDEFFKYILNADHNLYNEYK 305

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMD 297
            L + +        G   A               K          +   +    +  +  
Sbjct: 306 NLISNNN-----PTGVVVANDANFKRCCMLFHRLKNIHSNCLIVTNNNAVSFPYLYLKNK 360

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
             D   K  FD+VL D PCS  GT+R+  ++    +  +       Q  +L + I  VK 
Sbjct: 361 VDDSFEKIYFDSVLCDVPCSGDGTLRKDRNIWINWNPLNAYNLFQLQVNILKRSIELVKE 420

Query: 358 GGIVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALS------- 408
           GG V++S CSL+  ++E V+ +V  L  +   ++L+   +   K ++    L+       
Sbjct: 421 GGYVIYSTCSLNPIENEAVICEVFNLLHNSESLKLINFENELVKKLNYREGLTEWKLLID 480

Query: 409 ------------------PEGWIRIT---------PD----------MLEKIDGVSSGMD 431
                             PE + +I          P+           +++         
Sbjct: 481 DKWFNTYDEFIDYLKNIQPEKFKKIYEKIKNGMFTPNKEFMENINLKYVKRFFPHHYNAG 540

Query: 432 GFFAVALRRLIQ 443
           GFF   + +  Q
Sbjct: 541 GFFIALIEKRGQ 552


>gi|330836709|ref|YP_004411350.1| Fmu (Sun) domain-containing protein [Spirochaeta coccoides DSM
           17374]
 gi|329748612|gb|AEC01968.1| Fmu (Sun) domain protein [Spirochaeta coccoides DSM 17374]
          Length = 262

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 26/229 (11%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLR 280
           +  D ++ I  +      + +VLD+CAAPGGKT   A  +     + A D S  R  +L 
Sbjct: 50  YFMDEASIIAARALPVRPHDAVLDMCAAPGGKTLVLATRLGQDGSLVANDRSASRRSRLH 109

Query: 281 -------CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
                      R  +      +   +    + ++D++L+DAPCSS   +   P  L    
Sbjct: 110 AVLDGYLPAEIRAKVT-VTGHDSTRWSLHQRDMYDSILLDAPCSSERHVLTTPSALKEWS 168

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
                + +  Q  +L   +  VKP G +++S C+L   ++E+V+QK+L       E VPL
Sbjct: 169 PSRPKRLSVQQFAMLAAALDAVKPEGYILYSTCALAPIENEQVIQKLLERRKGRCETVPL 228

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +    ++ D        G+I I PD  +    +       +   +RR  
Sbjct: 229 SFEAAENRDA-------GYI-ILPDTADGRGPL-------YFCLIRRTA 262


>gi|58040838|ref|YP_192802.1| NusB family protein [Gluconobacter oxydans 621H]
 gi|81556897|sp|Q5FNA1|NUSB_GLUOX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|58003252|gb|AAW62146.1| NusB family protein [Gluconobacter oxydans 621H]
          Length = 160

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------LSQRDQILVRAIV 53
           +S   AR+ +   L    +   +   ++                   +   D  L + IV
Sbjct: 14  RSRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGHIPDADLKLFQEIV 73

Query: 54  NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
               R    IDA L  VL     LPR    L+ LLR +V +I   D  D  +++  ++ A
Sbjct: 74  LGVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI-GTDTPDRIIINEYLDVA 132

Query: 112 KRDKENR 118
                  
Sbjct: 133 HGFFSGD 139


>gi|126666701|ref|ZP_01737678.1| transcription antitermination protein NusB [Marinobacter sp. ELB17]
 gi|126628746|gb|EAZ99366.1| transcription antitermination protein NusB [Marinobacter sp. ELB17]
          Length = 166

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L      + +++ +      D+    +S+ D +  R +++ T R    +D +
Sbjct: 33  ARGMAMQGLYQRHFSKSAISNIEAEFMVDN---DMSKVDLLYFRDLLHGTSREQAELDRL 89

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           ++  L   L         ++R+   ++ + LDV    V++  +E AKR      
Sbjct: 90  IEPFLDRPLQEVDPVELAIVRLGAYELKFRLDVPYKVVINEGIEMAKRFGGTEG 143


>gi|300814531|ref|ZP_07094787.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511358|gb|EFK38602.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 238

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 88/233 (37%), Gaps = 20/233 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           N R  +  ++  V  K   L   L++         +S RD   V+ I    +R    +D 
Sbjct: 3   NIRQKALFIIDNVYNKGAFLEEQLNIF----KQSNISDRDFTFVKNITTGVIRNRTYLDY 58

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           V+         +    +  +L +++ Q  +LD + +Y++VD +V+ AK    N+  +  V
Sbjct: 59  VIKINSKIRFKKIHKIIAIILEMAIYQCYFLDKIPNYSIVDESVKLAK-LYGNKGSSSFV 117

Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178
           N+ILR +  +        + ++ ++     P+++ +     YG E    +  A       
Sbjct: 118 NAILRNIVSKDKVVVKIEDSIENLSVYYSHPKFYTKYFYENYGVELTRNLLKANNQESDF 177

Query: 179 DLTVK---FDIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVW 223
            + V       +  +  L                + E P++I     F EG +
Sbjct: 178 VIRVNTLKTKKDNLSKLLKYENFNVRDGLVPYSLIIENPKNIFDTQAFREGFF 230


>gi|309356148|emb|CAP37833.2| hypothetical protein CBG_20899 [Caenorhabditis briggsae AF16]
          Length = 784

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 71/451 (15%), Positives = 147/451 (32%), Gaps = 61/451 (13%)

Query: 32  EYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK--KYSLQ---QLL 86
                  + L    + L+R +   +L+F P  D +L       L +     ++     LL
Sbjct: 350 YRQWIQGKFLKPNKKALLR-LSCESLKFRPVFDEILK---DKELRKMKNDPNINGSVDLL 405

Query: 87  RVSVAQ------ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140
            V + +      +        +V+     + K  ++           ++       +++ 
Sbjct: 406 YVLMYETLVGSGLNRCSQEMKSVISRRATRMKEVEKELGADGRGIKSIKEAEEGAKKIVI 465

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200
                    +W  E        E    +  A        +    ++     + + +    
Sbjct: 466 PRYARINTLKWTVEEALKTLETEEWKILGTA-------SVEKFPELVANMKE-DEIYKDP 517

Query: 201 GGIRLKELPESIVSLPGF---AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
               L     +I +   +    +    +QD ++ +P  L        V D CAAPG KT+
Sbjct: 518 HVENLLIFAPNIQNFHEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTS 577

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------ 302
               ++ +  KV A+D +  R+  ++  LD   +        D                 
Sbjct: 578 HAAAIMDNQGKVWAMDRAADRVATMKQLLDGSKVAIASAFCGDFLKTDVTDKKFSKVSNP 637

Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRDTDDIVKSACFQRKLLLQGISFV 355
                         +VD PCS +G ++R  ++     + + + K    Q  +L   +   
Sbjct: 638 CFLSKILIFQVKFAIVDPPCSGSGIVKRMDEITGGNAEKERLEKLKNLQAMILKHALKL- 696

Query: 356 KPG-GIVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAMALSPEGW 412
            PG    V+S CS+ ++++E+VV +VL  +       L       W    ++     E  
Sbjct: 697 -PGLKRAVYSTCSIHEEENEQVVDEVLLDTYVRQNFVLKKDVLPEWTHRGLSTYEVGEHC 755

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +R  P +           +GFF     R+ +
Sbjct: 756 LRADPKVTL--------TNGFFVAVFERVKK 778


>gi|253576317|ref|ZP_04853647.1| transcription antitermination factor NusB [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844210|gb|EES72228.1| transcription antitermination factor NusB [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 149

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLL-----DLEYGDSAFRLLSQRD--QILVRAIV 53
           MK  + AR ++   +  +    +     +     +    +     LS  D  +     +V
Sbjct: 1   MKRRL-AREIAVQSMYQMEMNEVDANEAVTMLLTEAMEENEGEVELSDVDATRAFALELV 59

Query: 54  NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
           N T      ID++L+  L    + R     +Q+LR++  ++++  DV     V+ A+E A
Sbjct: 60  NGTWSRKDAIDSLLEDYLKGWQISRLSKVDRQVLRLATYEMIFRDDVPGKVAVNEAIELA 119

Query: 112 KRDKENRHFAKLVNSILRRVSREKIE 137
           K    +    K VN +L ++ ++  +
Sbjct: 120 K-HFGSPESGKFVNGVLGKMIQDIDQ 144


>gi|89256455|ref|YP_513817.1| ribosomal RNA small subunit methyltransferase [Francisella
           tularensis subsp. holarctica LVS]
 gi|167010374|ref|ZP_02275305.1| ribosomal RNA small subunit methyltransferase B [Francisella
           tularensis subsp. holarctica FSC200]
 gi|89144286|emb|CAJ79569.1| Ribosomal RNA small subunit methyltransferase [Francisella
           tularensis subsp. holarctica LVS]
          Length = 130

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 18/136 (13%)

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF-VKPGGIVVFS 364
            F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +  +   G ++++
Sbjct: 8   KFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWNNNLTDNGYLLYT 67

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CS+  +++++ +++ L  +         N+A    ID+          ++ P   +   
Sbjct: 68  TCSILAEENQQQIKEFLAKN---------NNAKIIEIDILEKYKTSYGYQLLPSQQDG-- 116

Query: 425 GVSSGMDGFFAVALRR 440
                 DGF+   L++
Sbjct: 117 ------DGFYYCLLKK 126


>gi|194900030|ref|XP_001979560.1| GG16141 [Drosophila erecta]
 gi|190651263|gb|EDV48518.1| GG16141 [Drosophila erecta]
          Length = 532

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 16/238 (6%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALD 270
           S          +Q+ + S+  +L       +VLD+CAAPG KT  L     +   + +++
Sbjct: 299 SHELVRSKRLILQNKATSLAAELLAPPMGATVLDMCAAPGMKTLHLCNVMKNKGCIYSVE 358

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328
           +   R E L    ++        I  DA D   ++  D   +LVD  CS +G   R    
Sbjct: 359 LDHVRYETLCEITEQAGCEIVKPILGDALDLTSERFADVEYILVDPSCSGSGMQNRMTVC 418

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
              +D + + +    Q K+L   +S       + +  CSL K+++E+VVQ+ L+ +P   
Sbjct: 419 DERKDDNRLYRLQGVQIKMLSHAMSAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSYK 478

Query: 389 EL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            L     L + +    D       +  +   PD        S   DG F     +L Q
Sbjct: 479 LLSCKKALRNKWHNVGDKDYPNIGKNCLYCLPD--------SDLTDGIFLALFEKLRQ 528


>gi|148906397|gb|ABR16353.1| unknown [Picea sitchensis]
          Length = 535

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 47/229 (20%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----------KVTALDV 271
              Q+A + +P       ++  VLD+CAAPG KT QL+                V A D 
Sbjct: 159 ITRQEAVSMVPPLFLDVQSHHYVLDMCAAPGSKTFQLLEMIHKSDKLAFLPKGMVIANDA 218

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------------------------- 306
             +R   L     R+      +   +A ++   +                          
Sbjct: 219 DVQRCNLLIHQTKRMCSANLLVTNHEAQNFPSCRCKNNGMLTQTTNETEDKGSGRLEMNE 278

Query: 307 -----------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                      FD +L D PCS  GTIR+ PD+    +          Q ++ ++G++ +
Sbjct: 279 DTHAESITELLFDRILCDVPCSGDGTIRKAPDIWKKWNAGLGNGVHRLQVQIAMRGVALL 338

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           K GG +V+S CS++  + E VV +VLR S   +EL+ +++ + +     
Sbjct: 339 KVGGKLVYSTCSMNPVEDEAVVGEVLRQSGGSIELLDVSAEFPELKRRP 387


>gi|194016988|ref|ZP_03055601.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
           7061]
 gi|194011594|gb|EDW21163.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
           7061]
          Length = 131

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I     +     +                +V   L   
Sbjct: 1   MKRRT-AREKALQTLFQIDVSNIDPKEAITHALDEQESD-------PFFEELVFGVLEQK 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            ++D ++   L    L R     + +LR+SV +++Y  D+     ++ A+E AK    + 
Sbjct: 53  DKLDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAK-LFGDD 111

Query: 119 HFAKLVNSILRRVSRE 134
             +K VN +L  +  +
Sbjct: 112 KASKFVNGVLSNIKND 127


>gi|125973352|ref|YP_001037262.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405]
 gi|256005458|ref|ZP_05430421.1| NusB antitermination factor [Clostridium thermocellum DSM 2360]
 gi|281417552|ref|ZP_06248572.1| NusB antitermination factor [Clostridium thermocellum JW20]
 gi|166215686|sp|A3DDP0|NUSB_CLOTH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|125713577|gb|ABN52069.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405]
 gi|255990598|gb|EEU00717.1| NusB antitermination factor [Clostridium thermocellum DSM 2360]
 gi|281408954|gb|EFB39212.1| NusB antitermination factor [Clostridium thermocellum JW20]
 gi|316940416|gb|ADU74450.1| NusB antitermination factor [Clostridium thermocellum DSM 1313]
          Length = 145

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              +R ++  L+  +  ++ S    ++          L++ D+  +  +V    +    I
Sbjct: 3   RRASREIAMKLIYQLEIQKDSREEQINNTLEQY---DLNENDREYILDVVKGVFKNQEEI 59

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D  ++       L R       +LR+++ ++ +  D+     ++ AVE AK        +
Sbjct: 60  DGTIEKFSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAKNYSGEESGS 119


>gi|72386983|ref|XP_843916.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62176397|gb|AAX70506.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800448|gb|AAZ10357.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 609

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 92/267 (34%), Gaps = 50/267 (18%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRL 276
              Q+  + IPV L        VLD+CAAPG KT+Q+            V A D++  RL
Sbjct: 134 LTRQETVSMIPVVLLQVAPGNRVLDMCAAPGSKTSQILEAVISSNQDGVVVANDLNVARL 193

Query: 277 EKLRCNLDR-LHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           + L     R    +   I+        P    +  FD VL D  CS  GT+R+  D+   
Sbjct: 194 DVLLHQTARSPGAHPHLIVTNYDGTQFPLLPKEDKFDRVLCDVMCSGDGTLRKSMDMWPR 253

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
            +T         Q ++L +G+   K GGIVV+S CSL+  + E VV + L  +     L+
Sbjct: 254 WNTVHGADLHVTQVRVLTRGMMLCKKGGIVVYSTCSLNPVEDEAVVSECLSQAKGTFRLI 313

Query: 392 PLNSAY-----WKSIDMAMALSPEGW--IRITP--------------------------- 417
                               L+ +    +R                              
Sbjct: 314 DPAPFLKDFVTVPGQTDWFLLTKDLTQKLRTFEDAEAYNQSKQAHGFRYRKSMFSNAQVL 373

Query: 418 -----DMLEKIDGVSSGMDGFFAVALR 439
                    ++        GFF  A+ 
Sbjct: 374 REQNIHFARRVVPHQQDTGGFFFAAME 400


>gi|170099357|ref|XP_001880897.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644422|gb|EDR08672.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 471

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/457 (17%), Positives = 156/457 (34%), Gaps = 55/457 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  L  +  K+ S+  ++           L + ++    A+V  TL+F   +  V+   
Sbjct: 7   AAKTLDRLDAKQGSIKGVI---------ATLPENNRKRTAALVIETLKFKSVLSDVIRE- 56

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                  +K +   L  V V  +L          D  ++QA    + R     +  I  +
Sbjct: 57  SKLMKEERKLTSINLALVLVHDLLLSR--GIQAGDGPIKQAVLRHKTR-LHGELQKIKIK 113

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190
                 + L   +  + IP + +     +   E +        S     +     +   A
Sbjct: 114 RGATSSQDLGLTSTTANIPRYARVNTSLWSIDEAIKYFVSQGYSF----INSFSSLNHLA 169

Query: 191 HKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVLD 247
           +             L   P + +   P +  G   +QD ++  P  +      +N  V+D
Sbjct: 170 NSKGFQKDAHIPNLLAFSPNAALQDDPAYNSGKIILQDKASCFPAVVLSPPSEDNSVVID 229

Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
             AAPG KT+ L   + +   + A +  ++R   L+  + +        +  D     P 
Sbjct: 230 ATAAPGNKTSHLSALMGNKGTLYAFERDRKRFSTLKMMIGKAACKNVTPVNTDFLTVDPS 289

Query: 305 KLFD----AVLVDAPCSSTGTIRRHPDVL-----WTRDTDDIV-KSACFQRKLLLQGISF 354
                    +L+D  CS +G + R   +L       +   + + K A FQ  ++   + F
Sbjct: 290 DPKYLPVTHILLDPSCSGSGIVNRLDHLLEGEPESEKSQHERLDKLAAFQLLMIKHAMRF 349

Query: 355 --VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV---------ELVPLNSAYWKSIDM 403
             VK    +V+S CS+   ++E VV+  L S              E++P       + +M
Sbjct: 350 PNVKK---IVYSTCSIHASENEHVVRDALSSDEAKAGSFSIASRNEVLPDWPRRGFAEEM 406

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +    +R  P             +GFF     R
Sbjct: 407 NSTDAASALVRCLPG--------EDATNGFFVSCFVR 435


>gi|197105131|ref|YP_002130508.1| N utilization substance protein B [Phenylobacterium zucineum HLK1]
 gi|196478551|gb|ACG78079.1| N utilization substance protein B [Phenylobacterium zucineum HLK1]
          Length = 149

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEY-----GDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++          D     L+  D+     +V   +R   
Sbjct: 11  ARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGETLASADEAFFADLVRGVVREQK 70

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            IDA +   L     L R   +++ +LR    ++++  DV     +D  VE  K   E  
Sbjct: 71  PIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVELTKSFFEGP 130

Query: 119 HFAKLVNSILR 129
                VN  L 
Sbjct: 131 E-PGFVNGALD 140


>gi|157867632|ref|XP_001682370.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125823|emb|CAJ03860.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1214

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 59/195 (30%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +D VLVDAPCS  G + R             ++    Q  LL + +   K GG +V++ C
Sbjct: 569 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRIVYATC 628

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------- 413
           +L+  ++E VV  VLR+    VEL+P      +  ++       G +             
Sbjct: 629 TLNPLENEAVVAAVLRACGGAVELIPPPRPLPRRTELQTEEDGGGSVPPLRLTAGLRSWD 688

Query: 414 -----------------------RITPDML----------------------EKIDGVSS 428
                                  R+ PDM                        ++    +
Sbjct: 689 VPSGAGGFLCSATEAYAQGESAARLPPDMFAPASAGADGDRTDISGALQRCCRRVMPHLN 748

Query: 429 GM-DGFFAVALRRLI 442
           G  DGFF   L +  
Sbjct: 749 GNADGFFVAVLEKRA 763


>gi|323702771|ref|ZP_08114431.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
 gi|323532288|gb|EGB22167.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
          Length = 144

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +   L  +   +I     L     +        ++    R +V  TL  +  I
Sbjct: 3   RRQARETALQALFQIDVGKIEPEFALKNTAEE---FGAGSQELEFARQLVTGTLEHINEI 59

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++  V     L R     + ++R+++ ++++  D+     ++ AVE AK         
Sbjct: 60  DEIISRVSKEWQLSRMANVDRNIMRLALYEMMFRDDIPGSVSINEAVELAKAF-GGADSG 118

Query: 122 KLVNSILRR 130
           K VN IL +
Sbjct: 119 KFVNGILGK 127


>gi|328767841|gb|EGF77889.1| hypothetical protein BATDEDRAFT_13651 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 454

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 46/245 (18%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
            +L+     G       ++   V A D +  R + L     RL      +   D  ++  
Sbjct: 142 QLLEAIHNVGENYDSETLADGLVVANDSNYERSQMLVHQAKRLQSPCLLVTNHDGQEFPR 201

Query: 304 KK-------------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                           FD +L D PCS  GT+R++  +  T    +       Q+++L +
Sbjct: 202 VFLTDRHSTEGATVLQFDRILCDVPCSGDGTMRKNKTIWRTWTHANGNGLHRLQKQILQR 261

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWK-----SIDM 403
           G   +K GG +V+S C+ +  ++E      L    +   + LV +++   +      +  
Sbjct: 262 GCELLKIGGRIVYSTCTFNPIENEATSIFCLTVFGNTGALRLVDVSADLPQLTRRSGLTT 321

Query: 404 AMALSPEGWI-----------------RITP---------DMLEKIDGVSSGMDGFFAVA 437
              +   G +                    P         +   ++        GFF   
Sbjct: 322 WKVMDKSGAMFDTFDSENESHRTTLAPTFFPPKNVDELGLNNCMRVYPYMQNGGGFFVAV 381

Query: 438 LRRLI 442
           + ++ 
Sbjct: 382 IEKVA 386


>gi|71747710|ref|XP_822910.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70832578|gb|EAN78082.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 740

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 125/434 (28%), Gaps = 109/434 (25%)

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII---PEWFKERLENFYGKERVLA 167
            +   + +     VN+  +    E   L +    +  +    EW  E             
Sbjct: 26  VRTTYDEKGNWMAVNNPDKLRQTECPALDRYYRDLQRLCTPQEWGDEMALFRQPLPTTFW 85

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGV 222
           I+D       I    +   +T    +    +     R+K             L  F    
Sbjct: 86  INDTDPLAPEISRYFESLPDTVVEAIPWYPIRGMAWRIKAGKTEFRRPEMKELRSFLIRH 145

Query: 223 -----WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA-------------------- 257
                   Q+  + +P  L         LD+CA+PG KTA                    
Sbjct: 146 TAIGTVSRQEEVSMLPPFLLDIQPTDKCLDMCASPGSKTAQILVSLGRHKVVPHDSDASP 205

Query: 258 --QLIVSGAKVTALDVSKRRLEKLRCNLDRLHL--------------------------Y 289
                 S   V A D+  +R   L   + R+ L                           
Sbjct: 206 FPFDYDSEGLVVANDIDTKRANMLVHQVKRMRLLFPFALFTNHDAQFFPNMVLTPGEAQP 265

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                +    D   +  FD +L D  CS  GTIR+ P +L      + +     Q ++ L
Sbjct: 266 HTCGQQTTGDDGATELRFDKILCDVVCSGDGTIRKAPHILKMWSPREAISLQKVQIQIAL 325

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW----------- 398
           +    ++ GG +V+S CS++  ++E VV +++  +   ++L+  +S              
Sbjct: 326 RACHLLRVGGRLVYSTCSMNPIENEAVVAQIIHRTKGAMKLIDCSSLLPGLRFTPGLQKW 385

Query: 399 ------------KSIDMAMALSPEG-----------------WIRITPDMLEKIDGVSSG 429
                          +   AL P G                  +R+ P            
Sbjct: 386 VVTNSKGNVVEAPCQEAHEALFPPGTPGAYSSDAVDAMDLRLCLRLLPSHCNGGA----- 440

Query: 430 MDGFFAVALRRLIQ 443
              FF   L ++ +
Sbjct: 441 ---FFIAVLSKVSE 451


>gi|312888751|ref|ZP_07748315.1| Fmu (Sun) domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311298751|gb|EFQ75856.1| Fmu (Sun) domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 389

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 127/387 (32%), Gaps = 35/387 (9%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81
              L+  L   Y  +    +   D+ +   ++    R        L   LI++       
Sbjct: 20  DTPLSKFLPGFYRQNKQ--MGSSDRRIASRLIYNYFR--------LGQALINTSTED--- 66

Query: 82  LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
                R+ VA+ L         V+  +   K       +A  V   L             
Sbjct: 67  -----RLFVAEFL-----CNTQVNSFLTHFK-----PDWALCVGFSLDEKLAMVKISYPD 111

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201
                + P W  +   +   +  + +        + I    +  ++    K + V    G
Sbjct: 112 FKLEDVFP-WTDQLSPSIDKQAFLKSFFYQPDLYIRILKGFEGQVKATLTKADIVFKEEG 170

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQL 259
              L     + +      +  + +QD S+    Q F         D CAA GGK      
Sbjct: 171 NQCLALPNGTRLDTLFPNQHWFEIQDFSSQQTAQFFKPNKWEHWWDACAASGGKSLLLHE 230

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAP 315
           +    K+   D+ +  L  L     +  L       +D             FD +++DAP
Sbjct: 231 LQPDLKLVVSDIRESILANLDERFQQAGLRKYQKKLVDLTKNVDPELHDYEFDGIILDAP 290

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           CS +GT  R P+++       I      Q+ ++   + ++KPG  +++  CS  K ++E+
Sbjct: 291 CSGSGTWSRTPEMIAQFQDFKIQSFKNLQQSIVRNVVKYLKPGKPLIYITCSAFKAENED 350

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSID 402
           +V  +       +E   +   Y +  D
Sbjct: 351 MVDFLSSEFGFKIEEQQILKGYGRKAD 377


>gi|68066142|ref|XP_675055.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56494015|emb|CAI05799.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 714

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 58/245 (23%)

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------- 302
            K          V A D + +R   L   L  +H     +   +A  +            
Sbjct: 296 KKLISNNNPTGVVVANDANFKRCCMLFHRLKNIHSNCLIVTNNNAVIFPYLYLKNKLDNS 355

Query: 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             K  FD+VL D PCS  GT+R+  ++    +  +       Q  +L + I  VK GG V
Sbjct: 356 FEKIYFDSVLCDVPCSGDGTLRKDRNIWINWNPLNAYNLFQLQVNILKRSIELVKEGGYV 415

Query: 362 VFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALS----------- 408
           ++S CSL+  ++E V+ +V  L ++   ++L+   +   K ++    L+           
Sbjct: 416 IYSTCSLNPIENEAVICEVFNLLNNGESLKLINFENELVKKLNYREGLTEWKLLIDDKWF 475

Query: 409 --------------PEGWIRIT---------PD----------MLEKIDGVSSGMDGFFA 435
                         PE + +I          P+           +++         GFF 
Sbjct: 476 NTYDEFIDYLKSIQPEKFKKIYEKIKNGMFTPNKEFMEKINLKYVKRFFPHHYNAGGFFI 535

Query: 436 VALRR 440
             + +
Sbjct: 536 ALIEK 540


>gi|156545332|ref|XP_001605840.1| PREDICTED: similar to williams-beuren syndrome critical region
           protein [Nasonia vitripennis]
          Length = 890

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 152/439 (34%), Gaps = 36/439 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++  L  + ++ I L   LD       F+ +          +  +T R    ++ ++ 
Sbjct: 33  KLTAKALMLLDKQGIPLNETLDER-RKLVFKKM--------YNLAELTQRHDEELNFLIA 83

Query: 69  FV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            + ++           +++   + ++L+      +  +  VE  K  +++   A +    
Sbjct: 84  KLEILKKKSALNPYEAKVM---ITELLWGRQFLMSG-NQKVEAIKFYEDDLREAYIQARD 139

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
           +      K   L     I+ +    ++ L N + KE    +        Y+ +     ++
Sbjct: 140 ICNPIENKNPNLPVYIRINTLTISIEDTL-NAFYKEGWNLLPRCNSYSEYLSV-----LQ 193

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
               +          +          + PG+ +G +  QD  + +   L     +  V D
Sbjct: 194 RLGERDFIRDYHISELLAFPPGTLFYNHPGYIKGKFLYQDKGSCLSSFLLNPKPDSVVFD 253

Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
            CAAPG KT     ++ +   + A D+   R++K+   L  L      I++ D       
Sbjct: 254 ACAAPGIKTNHLANIMNNTGLIYANDIHPLRVKKMIDLLG-LTETNARILKEDFISMDYS 312

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
              D   +    SST +   +           +++       +L   +        VV++
Sbjct: 313 AYADVKYILVEPSSTYSGIFYAVGA-RMKKVGLMRRQFVSNTMLRSALQQFPNVKRVVYT 371

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNS---AYWKSIDMAMALSPEGWIRITPDMLE 421
            CSL  ++ EE++++V++       L+ +       W+S+     +     +RI P+   
Sbjct: 372 ICSLYSEEGEEIIEQVMKEVGDSFTLLDIKKMLWNEWESMSQPGNICGGKCLRIVPEYDL 431

Query: 422 KIDGVSSGMDGFFAVALRR 440
                     G+F     R
Sbjct: 432 CQ--------GYFVAVFER 442


>gi|92114700|ref|YP_574628.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043]
 gi|119390757|sp|Q1QUC9|NUSB_CHRSD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91797790|gb|ABE59929.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043]
          Length = 166

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 12/140 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ----------RDQILVRA 51
           +S   AR ++   L        S+T +        A   L             D  L   
Sbjct: 13  QSRRAARELAVQGLYQWQMTGKSITAVESEFRAQIADEDLEDHENWHKVMGIADLALFHE 72

Query: 52  IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110
           +++        ID  +  +L   L         +LR+   ++ Y L+V   AV++  +E 
Sbjct: 73  LLHNVAADREAIDKTIAPLLDRRLEDLDRIELAILRLGAYELKYRLEVPYRAVINEGIEL 132

Query: 111 AKRDKENRHFAKLVNSILRR 130
           AK         K VN IL +
Sbjct: 133 AKAFGATDG-HKYVNGILDK 151


>gi|134298933|ref|YP_001112429.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
 gi|172044268|sp|A4J3F1|NUSB_DESRM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134051633|gb|ABO49604.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
          Length = 143

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  +L  +   +      L+    +        ++    R +V  TL  +  I
Sbjct: 3   RRQARETALQVLFQIDLGKTEPDLALNNTAEE---FGAGPQEIEFARQLVMGTLEHIEEI 59

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           DA++  V     L R     + ++R+++ ++ Y  D+     V+ A+E +K         
Sbjct: 60  DAMIGKVSKEWQLNRMANVDRNIMRLAIFEMNYRADIPKSVSVNEALELSK-IFGTPDSV 118

Query: 122 KLVNSILRR 130
           + +N IL +
Sbjct: 119 RFINGILGK 127


>gi|138895967|ref|YP_001126420.1| transcription antitermination protein NusB [Geobacillus
           thermodenitrificans NG80-2]
 gi|166215689|sp|A4IQS1|NUSB_GEOTN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134267480|gb|ABO67675.1| N utilization substance protein B [Geobacillus thermodenitrificans
           NG80-2]
          Length = 130

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 10/123 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I     +    G              +R +V   +   
Sbjct: 1   MK-RHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVD-------PFLRQLVFDVIEHR 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID +L   L    L R     + +LR++  ++ Y  DV     +D AVE AK+  + +
Sbjct: 53  AEIDELLRSNLEKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELAKKFGDWK 112

Query: 119 HFA 121
             +
Sbjct: 113 SGS 115


>gi|63093895|dbj|BAD98176.1| hypothetical protein [Drosophila parabipectinata]
          Length = 421

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 16/245 (6%)

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLI 260
              +      S     +  + +Q+    +  +L    +  +VLD+CAAPG KT      +
Sbjct: 178 FHHKWSSYWSSHEFVKQKKFILQNKGTCLAAELLAPPSGSTVLDMCAAPGMKTLHLCNFM 237

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSS 318
            +  ++ A++ S  R   L              I  DA     +   +   +LVD  CS 
Sbjct: 238 KNKGRIYAVEQSTERYRVLCNITSEAGCDIVTPILGDALRMNAENCPEVEYILVDPSCSG 297

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
            G   R       +D   + K A  Q K+L   ++       + +  CSL K+++EEVV+
Sbjct: 298 NGMQSRMNVCDEEKDDQRLFKLAGLQVKILSHAMTAFPNVKRIAYCTCSLYKEENEEVVK 357

Query: 379 KVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           + L+ +P    L     L + +    D   A   +  +   PD        S   DG F 
Sbjct: 358 RCLQVNPSFKLLSCKKALRNKWHNVGDTEYAKIGKNVLYCLPD--------SDLTDGIFL 409

Query: 436 VALRR 440
               +
Sbjct: 410 ALFEK 414


>gi|157692931|ref|YP_001487393.1| transcription antitermination protein NusB [Bacillus pumilus
           SAFR-032]
 gi|166918803|sp|A8FF16|NUSB_BACP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157681689|gb|ABV62833.1| transcription antitermination protein NusB [Bacillus pumilus
           SAFR-032]
          Length = 131

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I     +     +                +V   L   
Sbjct: 1   MKRRT-AREKALQTLFQIDVSNIDPKEAITHALDEQESD-------PFFEELVFGVLEQK 52

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            ++D ++   L    L R     + +LR+SV +++Y  D+     ++ A+E AK    + 
Sbjct: 53  DKLDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAK-LFGDD 111

Query: 119 HFAKLVNSILRRVSRE 134
              K VN +L  +  +
Sbjct: 112 KAPKFVNGVLSNIKND 127


>gi|302819862|ref|XP_002991600.1| hypothetical protein SELMODRAFT_133737 [Selaginella moellendorffii]
 gi|300140633|gb|EFJ07354.1| hypothetical protein SELMODRAFT_133737 [Selaginella moellendorffii]
          Length = 551

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 8/149 (5%)

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D     P   FD VL+DAPCS+ G   R          + + + A +QR+L  + +  VK
Sbjct: 392 DMIKRFPPNSFDRVLLDAPCSALGL--RPRLFAAEETLESLGRHAIYQRRLFDRAVELVK 449

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
            GG +V+S C+++  ++E +V+  L      V +  +       +    ++      R  
Sbjct: 450 AGGTLVYSTCTINPGENEALVRYALDKYKFLVLVDQVPKIGGPGLVGGTSVYDGRGYREW 509

Query: 417 ----PDMLEKIDGVSSGMD--GFFAVALR 439
                  L +    SS +D  GFF    +
Sbjct: 510 LKEGEQYLVQRFDPSSPVDTIGFFIAKFQ 538


>gi|261332735|emb|CBH15730.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 740

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 125/434 (28%), Gaps = 109/434 (25%)

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII---PEWFKERLENFYGKERVLA 167
            +   + +     VN+  +    E   L +    +  +    EW  E             
Sbjct: 26  VRTTYDEKGNWMAVNNPDKLRQTECPALDRYYRDLQRLCTPQEWGDEMALFRQPLPTTFW 85

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGV 222
           I+D       I    +   +T    +    +     R+K             L  F    
Sbjct: 86  INDTDPLAPEISRYFESLPDTVVEAIPWYPIRGMAWRIKAGKTEFRRPEMKELRSFLIRH 145

Query: 223 -----WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA-------------------- 257
                   Q+  + +P  L         LD+CA+PG KTA                    
Sbjct: 146 TAIGTVSRQEEVSMLPPFLLDIQPTDKCLDMCASPGSKTAQILVSLGRHKVIPHDSDASP 205

Query: 258 --QLIVSGAKVTALDVSKRRLEKLRCNLDRLHL--------------------------Y 289
                 S   V A D+  +R   L   + R+ L                           
Sbjct: 206 FPFDYDSEGLVVANDIDTKRANMLVHQVKRMRLLFPFALFTNHDAQFFPNMVLTPGEAQP 265

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                +    D   +  FD +L D  CS  GTIR+ P +L      + +     Q ++ L
Sbjct: 266 HTCGQQTTGDDGATELRFDKILCDVVCSGDGTIRKAPHILKMWSPREAISLQKVQIQIAL 325

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW----------- 398
           +    ++ GG +V+S CS++  ++E VV +++  +   ++L+  +S              
Sbjct: 326 RACHLLRVGGRLVYSTCSMNPIENEAVVAQIIHRTKGAMKLIDCSSLLPGLRFTPGLQKW 385

Query: 399 ------------KSIDMAMALSPEG-----------------WIRITPDMLEKIDGVSSG 429
                          +   AL P G                  +R+ P            
Sbjct: 386 VVTNSKGNVVEAPCQEAHEALFPPGTPGAYSSDAVDAMDLRLCLRLLPSHCNGGA----- 440

Query: 430 MDGFFAVALRRLIQ 443
              FF   L ++ +
Sbjct: 441 ---FFIAVLSKVSE 451


>gi|146417055|ref|XP_001484497.1| hypothetical protein PGUG_03877 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 514

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 158/449 (35%), Gaps = 57/449 (12%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88
           L+ +  ++     S +    + A+V  T+R+ P ++ V+    I    + K         
Sbjct: 86  LNTQIFNNKHLSSSPK---HIYALVYSTMRYKPYLEEVIKKSKIRQSSKLKKLKVS---- 138

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL-----LQRIA 143
                     +   ++   +  + R +       + +++L   +R + EL       ++ 
Sbjct: 139 ---------DSLLLLLVHDLLFSPRGRIELGKHPIKDAVLENKTRLQAELIKLKLRYKVK 189

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYID----LTVKFDIETWAHKLNAVMLP 199
            ++ +P    E+ E      R+  I  +    +  D    L      +  A         
Sbjct: 190 TLADLPN-TVEQDETPIRWIRINTIVASEEEVMREDFFEKLKFVDSTDEIASGKIYRDTI 248

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL---FGTLNNLSVLDLCAAPGGKT 256
              +      E I +   +  G   +QD ++  P Q+        +  V+D CAAPG KT
Sbjct: 249 VTNLYGIHPSEKITNTEAYKNGKIIIQDRASCFPAQILNGDPENQHEVVIDACAAPGNKT 308

Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCP--KKLFD 308
                 +     V A +   +R++ L+    +          I   D     P       
Sbjct: 309 THLASFLPKNGVVHAFERDDKRVKTLKMMTSKALGPNKDLIQITHADFMTIIPSDFPKVT 368

Query: 309 AVLVDAPCSSTGTIRRH------PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-V 361
            ++VD  CS +G   R            T DT+ + K A FQ K++   + F  PG   +
Sbjct: 369 GIVVDPSCSGSGIFGRALEDAQLEQDRETIDTERLTKLASFQFKIVKHTMKF--PGARKI 426

Query: 362 VFSNCSLDKQDSEEVVQKVLRS----------SPIPVELVPLNSAYWKSIDMAMALSPEG 411
           V+S CS+   ++E VV  +L            +P    L   +   WK   ++M+  P+ 
Sbjct: 427 VYSTCSIHPHENERVVMDLLADPEVKEQGWKLAPKEQVLPNWHRRGWKDEFVSMSRDPQV 486

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++    +  +     G  GFFA    R
Sbjct: 487 CEQLAGGCVRAV-PKEDGGIGFFAACFIR 514


>gi|115496370|ref|NP_001069469.1| putative methyltransferase NSUN3 [Bos taurus]
 gi|122143235|sp|Q0P5D8|NSUN3_BOVIN RecName: Full=Putative methyltransferase NSUN3; AltName:
           Full=NOL1/NOP2/Sun domain family member 3
 gi|112362104|gb|AAI20182.1| NOL1/NOP2/Sun domain family, member 3 [Bos taurus]
 gi|296491582|gb|DAA33625.1| putative methyltransferase NSUN3 [Bos taurus]
          Length = 338

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 108/291 (37%), Gaps = 22/291 (7%)

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220
                         +L     ++ +   L   +          L  +   +P        
Sbjct: 51  WQYAVLLNRFNYPFELEKDLHLKGYHSLLQGSLPYYPKSMKCYLSRTPHRMPSERHQTGN 110

Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLE 277
              +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL 
Sbjct: 111 LKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSLALLQCAYPGYLHCNEYDSLRLR 170

Query: 278 KLRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330
            LR      + +  +    + E+D  +    +   FD VLVDAPCS+  +          
Sbjct: 171 WLRQTLESFIPQPLVNVIKVSELDGREMGDAQPETFDKVLVDAPCSNDRSWLFSSDSQKA 230

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                        Q +LL   I  ++PGG++V+S C+L K ++++V+ +VL S    + +
Sbjct: 231 ACRISQRRNLPLLQMELLRSAIKALRPGGLLVYSTCTLSKAENQDVISEVLNSYSNIMPV 290

Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                A   S D   A + +   + + PD  +            +   L++
Sbjct: 291 DIKEMARTCSRDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 334


>gi|291400841|ref|XP_002716799.1| PREDICTED: NOP2/Sun domain family, member 3 [Oryctolagus cuniculus]
          Length = 339

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 17/230 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL  
Sbjct: 111 KRYYLLNAASLLPVLALEVQDGEKVLDLCAAPGGKSVALLQCAYPGYLHCNEYDSLRLRW 170

Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331
           L+      + +  +    + E+D  D    +   FD VLVDAPCS+  +           
Sbjct: 171 LKQTLESFIPQPLINTIKVSELDGRDMGESQPESFDKVLVDAPCSNDRSWLFSSDSQKAA 230

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                       Q +LL   I  ++PGG++V+S C+L K ++++V+ ++L S    + + 
Sbjct: 231 CMISQRRNLPVLQIELLRSAIKALRPGGLLVYSTCTLSKAENQDVISEILNSHSNIMPVD 290

Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   S D   A + +   + + PD  +            +   L++
Sbjct: 291 IKGITRTCSQDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333


>gi|302894281|ref|XP_003046021.1| hypothetical protein NECHADRAFT_76439 [Nectria haematococca mpVI
           77-13-4]
 gi|256726948|gb|EEU40308.1| hypothetical protein NECHADRAFT_76439 [Nectria haematococca mpVI
           77-13-4]
          Length = 846

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 77/235 (32%), Gaps = 56/235 (23%)

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-------------LFDAVL 311
            + A D   +R   L   L RL      +   DA  +   +              FD +L
Sbjct: 240 MLIANDSDYKRGHMLVHQLKRLSSPNLLVTNHDATQFPSIRLPPREGNSKPTYLKFDRIL 299

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R++ ++         +     Q ++L++ +  +K GG VVFS CS++  
Sbjct: 300 ADVPCSGDGTLRKNANIWKDWQPGSALGLHQTQIRILVRALQLLKVGGRVVFSTCSMNPV 359

Query: 372 DSEEVVQKVLRSSP-IPVELVPLNSAYW---KSIDMAMALSPEGWIRIT----------- 416
           ++E VV   +       VE+V  +       ++  M      +   RI            
Sbjct: 360 ENESVVVSAIERCGAENVEIVDCSDQLPNLKRNPGMKDWKIMDKSARIWSSWKEVEDFAK 419

Query: 417 --PD--------------------------MLEKIDGVSSGMDGFFAVALRRLIQ 443
             PD                             ++        GFF   L +  +
Sbjct: 420 ESPDNVIPGRVVETMFPRVEGSDCADLPLERCMRVYPHMQDTGGFFITVLEKKSE 474


>gi|254492114|ref|ZP_05105289.1| transcription antitermination factor NusB [Methylophaga thiooxidans
           DMS010]
 gi|224462666|gb|EEF78940.1| transcription antitermination factor NusB [Methylophaga thiooxydans
           DMS010]
          Length = 150

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 7/143 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
               AR  +   L   +    +     L+    + A     + D+     ++  T+++  
Sbjct: 6   PRTKARRAAVQALYQALVNNETPQKAGLEFVTAEYA----DKIDRKYFTTLIEGTIKYQQ 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            IDA L   +   L         +LR++V + ++L ++    V++ AVE AK     +  
Sbjct: 62  AIDAELSEAVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAKSFGGEQG- 120

Query: 121 AKLVNSILRRVSREKIELLQRIA 143
            K VN +L ++         + A
Sbjct: 121 HKYVNGVLDKMGARLRPHEYQAA 143


>gi|209877447|ref|XP_002140165.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
 gi|209555771|gb|EEA05816.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
          Length = 712

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 24/199 (12%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTAL 269
           G  + Q+A + +PV       + ++LD+C+APG KT+Q                  + A 
Sbjct: 119 GCIFRQEAVSMLPVLFLDISKHHAILDMCSAPGSKTSQILEILKSDTDDKEFVSGFLVAN 178

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----------KKLFDAVLVDAPCSST 319
           D+  RR   L  ++  L+  +  +    A ++            K LFD +L D PCSS 
Sbjct: 179 DLDTRRAHMLIHHMRHLNSPSFVVTTHSADNFPELYIDKDSKLTKFLFDRILCDVPCSSD 238

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
           GT+R++P++    +T+        QRK+LL+ +S +KP G++V+S CS +  ++E V+  
Sbjct: 239 GTLRKNPNLFSKWNTNFGCSLHRLQRKILLRALSLIKPKGLIVYSTCSFNPIENEAVIAS 298

Query: 380 V---LRSSPIPVELVPLNS 395
           V   L+   I VE++   +
Sbjct: 299 VITSLKKQGITVEIIDPKN 317


>gi|146341341|ref|YP_001206389.1| transcription antitermination protein NusB [Bradyrhizobium sp.
           ORS278]
 gi|166918805|sp|A4YW92|NUSB_BRASO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146194147|emb|CAL78168.1| antitermination factor (L factor) (N utilization substance protein
           B) [Bradyrhizobium sp. ORS278]
          Length = 168

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 9/143 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  +L           +        +    R IV+  +R  
Sbjct: 24  AARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQYLPAEAAFFRDIVSGVVRDQ 83

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
            +ID VLD  L     L R +  L+ +LR    ++    DV    VV   V+ A      
Sbjct: 84  TKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEYVDIAHAFV-E 142

Query: 118 RHFAKLVNSILRRVSREKIELLQ 140
           R    +VN++L +++R+      
Sbjct: 143 RDETGMVNAVLEQLARQYRGDEM 165


>gi|239939930|ref|ZP_04691867.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
 gi|239986415|ref|ZP_04707079.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 11379]
 gi|291443361|ref|ZP_06582751.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
 gi|291346308|gb|EFE73212.1| transcription antitermination protein NusB [Streptomyces
           roseosporus NRRL 15998]
          Length = 143

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 3/135 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  S+  +L      S               +V    ++ 
Sbjct: 1   MAARNKARKRAFQILFEADQRGASVQSVLADWVRHSRTDDRQPPVGEFTMELVEGYAQYA 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +   + R     + +LR+   +++++D   D  V+D AV+ AK      
Sbjct: 61  DRIDDLIVTYAVDWEIDRMPVVDRNILRLGAYELIWMDETPDAVVIDEAVQLAKEF-STD 119

Query: 119 HFAKLVNSILRRVSR 133
                VN +L R   
Sbjct: 120 DSPSFVNGLLARFKD 134


>gi|282897600|ref|ZP_06305600.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Raphidiopsis brookii D9]
 gi|281197523|gb|EFA72419.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Raphidiopsis brookii D9]
          Length = 321

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 93/277 (33%), Gaps = 17/277 (6%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP--E 210
             RL +   +E     +     P    +    +                   +  L   E
Sbjct: 12  AHRLFDNPDEEAKFIAALVHPQPFSPSILWCQNPPETRPFTTETPTSWQPKFIDRLQVGE 71

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKV 266
                     G ++  D S+     +          VLD+CAAPGGK+           +
Sbjct: 72  RPGQHALHQAGAFYCLDFSSIFAASVLLTIEQPTPLVLDVCAAPGGKSIFAWKALKPDLI 131

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRR 324
            + +V  +RL  L  NL R  +    ++  D              V+VDAPCS    + +
Sbjct: 132 VSNEVIGKRLGMLISNLKRCQIQPGYVLNRDTSILAQMLKQSMSLVIVDAPCSGQSLLAK 191

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
                       I K+A  Q++++      V P G +V+  C+   +++E+V    L   
Sbjct: 192 REKAPGCFHQTVINKNANRQKRIIANSAGIVAPQGYLVYMTCTYSPEENEQVCTWFLERF 251

Query: 385 PIP--VELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           P    VE+ PL++           L+     R+ P  
Sbjct: 252 PQFKPVEVSPLST-------YRSNLTTIPCYRMFPQD 281


>gi|301119497|ref|XP_002907476.1| tRNA (cytosine-5-)-methyltransferase NSUN2-like protein
           [Phytophthora infestans T30-4]
 gi|262105988|gb|EEY64040.1| tRNA (cytosine-5-)-methyltransferase NSUN2-like protein
           [Phytophthora infestans T30-4]
          Length = 748

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 28/162 (17%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD V+  APCS  G IR+ P+   T   +  +     Q  L    +S ++ GG +++S  
Sbjct: 348 FDRVICCAPCSGDGLIRKLPEKWRTWSPEQALVHHPSQLGLAEHAVSLLRTGGALLYSTR 407

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNS-----------AYWKSIDMAMA--LSPEGWI 413
           SL+  ++E VV ++LR S   +ELV  +            + W  +D+A     S +   
Sbjct: 408 SLNPIENEAVVAELLRRSNGALELVETDDILEGLERSHGLSQWDVLDLASWDDASEDQRH 467

Query: 414 RITPDMLE---------------KIDGVSSGMDGFFAVALRR 440
           R+ P M                 ++    +   G F   +R+
Sbjct: 468 RLRPSMWPPSNEECDEMHLDRCVRLLPHQNDTHGLFLAVIRK 509


>gi|254427255|ref|ZP_05040962.1| transcription antitermination factor NusB [Alcanivorax sp. DG881]
 gi|196193424|gb|EDX88383.1| transcription antitermination factor NusB [Alcanivorax sp. DG881]
          Length = 149

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +++ +      +  F  +   D+     +++  L  + 
Sbjct: 7   SARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKV---DREYFHDLLHGVLGQVK 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D +L   L   +       + +LR+   ++    DV    V++  +E AK       F
Sbjct: 64  TLDELLTPYLDRRVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGAEDSF 123

Query: 121 A 121
            
Sbjct: 124 K 124


>gi|78485740|ref|YP_391665.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2]
 gi|119390843|sp|Q31FT2|NUSB_THICR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78364026|gb|ABB41991.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2]
          Length = 161

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R V+   L          +  +D+    S    L   D  L + IVN        +
Sbjct: 24  RTQTRRVALQALYQWQVNH---SETVDIIKQFSEEGRLVDTDVALFQEIVNEVANHAADL 80

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122
           D +    L  ++ R     + ++R+ V ++   L++    V++ +VE AKR        K
Sbjct: 81  DELYAPFLDRAVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAKRF-GAEDSHK 139

Query: 123 LVNSILRR 130
            +N IL +
Sbjct: 140 YINGILDK 147


>gi|297680257|ref|XP_002817918.1| PREDICTED: putative methyltransferase NSUN5-like, partial [Pongo
           abelii]
          Length = 377

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 133/349 (38%), Gaps = 20/349 (5%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           + A+V  T R+   +DAV+    L+ +  + +  L ++L   V ++L             
Sbjct: 36  LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92

Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
               +     +   A+L        + + +E+  R    S +P + +         + V 
Sbjct: 93  ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226
                  S      +   D      K   +      + +      +   P +  G   +Q
Sbjct: 153 YFKRQGFSYQG-RASSLDDFRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283
           D ++ +P  L        V+D CAAPG KT+ L     +  K+ A D+  +RL  +   L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337
            R  +   ++ E D     P          +L+D  CS +G   R        T     +
Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPARL 331

Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
              A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +
Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCREENEDVVRDALQQN 377


>gi|255088551|ref|XP_002506198.1| predicted protein [Micromonas sp. RCC299]
 gi|226521469|gb|ACO67456.1| predicted protein [Micromonas sp. RCC299]
          Length = 771

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
           +R T D +     QR++L +     +P GG +V++ CSL ++++E V             
Sbjct: 637 SRGTRDDLSLPEVQRRILAKAAGLCRPNGGALVYATCSLLREENECVRAWFDTRFGDDFV 696

Query: 390 LVPLNSAYWKSIDMAMALSPEGWI---------------RITPDMLEKIDGVSSGMDGFF 434
            VP  + +  + D       EG +                + P     +     G DGF+
Sbjct: 697 PVPFEAHWPLAPDDVTGDVDEGDVARDDVDEDGNAMDDGTVAPSHGFALRPDLHGCDGFY 756

Query: 435 AVALRRLIQP 444
                R  +P
Sbjct: 757 VARWIRKPEP 766


>gi|217964495|ref|YP_002350173.1| transcription antitermination factor NusB [Listeria monocytogenes
           HCC23]
 gi|254829884|ref|ZP_05234539.1| transcription antitermination protein NusB [Listeria monocytogenes
           10403S]
 gi|254772645|sp|B8DFW9|NUSB_LISMH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217333765|gb|ACK39559.1| transcription antitermination factor NusB [Listeria monocytogenes
           HCC23]
 gi|307570941|emb|CAR84120.1| transcription antitermination factor [Listeria monocytogenes L99]
          Length = 128

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +SL   +     D     + +        +V   +   
Sbjct: 1   MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA+++  L +  + R       LLR+SV +I YL DV +   ++ ++E AK    + 
Sbjct: 52  AEIDAIIEPNLDNWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110

Query: 119 HFAKLVNSILRR 130
             +K +N +L  
Sbjct: 111 KSSKFINGVLAN 122


>gi|322828741|gb|EFZ32426.1| hypothetical protein TCSYLVIO_1232 [Trypanosoma cruzi]
          Length = 949

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 95/283 (33%), Gaps = 67/283 (23%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------------K 265
            E +   Q  S+ +PV L       +VLDLCA+PG KT  +                   
Sbjct: 294 NERLISFQSTSSMLPVLLLDPRPGEAVLDLCASPGSKTTLIHEYMFGISSSSKSLLATGC 353

Query: 266 VTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTG 320
           + A D    R   L   L  +    A   I+   F   P       +D VLVDAPCS  G
Sbjct: 354 IVANDAVFSRRRTLSQRLQSVSPSIAVTQIQGQTFPAQPIASGGVRYDKVLVDAPCSGEG 413

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            + R             ++    Q  LL   +     GG VV+S C+L+  ++E V+  V
Sbjct: 414 RMHRDVMSWRMWHPLKAMEFFTTQVSLLRHAVELCAAGGCVVYSTCTLNPLENEAVISTV 473

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALS-------------------------------P 409
           L    + +   P           +  LS                               P
Sbjct: 474 LADGEVELIRPPHFMTADSGWHFSRGLSHWLVPSRAGGFLHTFAEAEAKGEETAVELFPP 533

Query: 410 EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           EG            +R+ P         +SG +GFF  ALR++
Sbjct: 534 EGNGEIQKALESCCLRVLPHR-------NSGAEGFFLAALRKV 569


>gi|148255993|ref|YP_001240578.1| transcription antitermination protein NusB [Bradyrhizobium sp.
           BTAi1]
 gi|166918804|sp|A5EKH8|NUSB_BRASB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146408166|gb|ABQ36672.1| NusB antitermination factor [Bradyrhizobium sp. BTAi1]
          Length = 169

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 9/143 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  +L           +        +    R IV+  +R  
Sbjct: 25  AARLAAVQALYQMDIAGAGINDVLAEFESHWLGSEVEGEQYLPAEAAFFRDIVSGVVRDQ 84

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
            +ID VLD  L     L R +  L+ +LR    ++    DV    VV   V+ A      
Sbjct: 85  TKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEYVDIAHAFV-E 143

Query: 118 RHFAKLVNSILRRVSREKIELLQ 140
           R    +VN++L +++R+      
Sbjct: 144 RDETGMVNAVLEQLARQYRADEM 166


>gi|104779852|ref|YP_606350.1| transcription antitermination protein NusB [Pseudomonas entomophila
           L48]
 gi|123079269|sp|Q1IFL9|NUSB_PSEE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|95108839|emb|CAK13535.1| transcription termination, L factor (N utilization substance
           protein B) [Pseudomonas entomophila L48]
          Length = 166

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L      + SL  +      D+ F   S  D    R I++       
Sbjct: 26  AKRREARKLATQALYQWHMAKHSLNEVEAQFRVDNDF---SDVDGAYFREILHGVPAKKV 82

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L + L         +LR+S  + ++  DV    V++  VE AK        
Sbjct: 83  EIDEALKPCLDTPLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVELAKVFGATDGH 142

Query: 121 A 121
            
Sbjct: 143 K 143


>gi|261327025|emb|CBH10000.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 655

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 92/267 (34%), Gaps = 50/267 (18%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRL 276
              Q+  + IPV L        VLD+CAAPG KT+Q+            V A D++  RL
Sbjct: 180 LTRQETVSMIPVVLLQVAPGNRVLDMCAAPGSKTSQILEAVISSNQDGVVVANDLNVARL 239

Query: 277 EKLRCNLDR-LHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           + L     R    +   I+        P    +  FD VL D  CS  GT+R+  D+   
Sbjct: 240 DVLLHQTARSPGAHPHLIVTNYDGTQFPLLPKEDKFDRVLCDVMCSGDGTLRKSMDMWPR 299

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
            +T         Q ++L +G+   K GGIVV+S CSL+  + E VV + L  +     L+
Sbjct: 300 WNTVHGADLHVTQVRVLTRGMMLCKKGGIVVYSTCSLNPVEDEAVVSECLSQAKGTFRLI 359

Query: 392 PLNSAY-----WKSIDMAMALSPEGW--IRITP--------------------------- 417
                               L+ +    +R                              
Sbjct: 360 DPAPFLKDFVTVPGQTDWFLLTKDLTQKLRTFEDAEAYNQSKQAHGFRYRKSMFSNAQVL 419

Query: 418 -----DMLEKIDGVSSGMDGFFAVALR 439
                    ++        GFF  A+ 
Sbjct: 420 REQNIHFARRVVPHQQDTGGFFFAAME 446


>gi|209884998|ref|YP_002288855.1| transcription antitermination factor NusB [Oligotropha
           carboxidovorans OM5]
 gi|209873194|gb|ACI92990.1| transcription antitermination factor NusB [Oligotropha
           carboxidovorans OM5]
          Length = 156

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 9/144 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  +            +        +    R IV+  +R  
Sbjct: 14  AARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDEYLPAEAAFFRDIVSGVVRDQ 73

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            RID +LD  L     L R +  L+  LR    ++ +  DV    V+   V+ A      
Sbjct: 74  GRIDPMLDEALSRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYVDVAHAFF-E 132

Query: 118 RHFAKLVNSILRRVSREKIELLQR 141
              A +VN++L +++R+       
Sbjct: 133 ADEAGMVNAVLDQIARQTRAGEFH 156


>gi|319651493|ref|ZP_08005621.1| transcription antitermination protein NusB [Bacillus sp.
           2_A_57_CT2]
 gi|317396808|gb|EFV77518.1| transcription antitermination protein NusB [Bacillus sp.
           2_A_57_CT2]
          Length = 129

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 12/133 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +   +      ++                  +  +V+  L+  
Sbjct: 1   MKRRT-AREKALQALFQIDVSQAEPETAIEHVLEGEKSDE-------YLNKLVSGVLQHK 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKEN 117
             ID  +   L   +L R     + LLR+SV ++LYL  +V    V+D A+E AK    +
Sbjct: 53  ETIDGEIKGFLEKWTLERLATVDRNLLRLSVYELLYLAEEVPANVVLDEAIEIAK-LYGD 111

Query: 118 RHFAKLVNSILRR 130
              +K +N +L +
Sbjct: 112 DQSSKFINGVLSK 124


>gi|261335640|emb|CBH18634.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 337

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 25/241 (10%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267
              ++  F     +  D + ++ V+L G      VLDLCA  GGK    +Q + + A +T
Sbjct: 88  PPPAIDEFNVKAHYPLDYTTALAVELLGVQQFDLVLDLCAGVGGKSIAISQFLSNSASLT 147

Query: 268 ALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT--- 321
           A +    R  +LR N+            + +     +     +  VLVDAPC+       
Sbjct: 148 ANEQRGDRCARLRRNIKEYVPSNYVPVTVTQRKPETWHDPSTYHRVLVDAPCTGERQLLQ 207

Query: 322 -IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
              +H            V+ +  QR LLL+ I   +PGG +V++ CS+   +++EVV++ 
Sbjct: 208 HSGKHAVSPLHWSLQACVELSHTQRGLLLRSIETCRPGGRIVYTTCSISPLENDEVVREA 267

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L+ +   VEL+       +  +            + PD               +   + +
Sbjct: 268 LKRTRCQVELMHPPVPIGEKTEFGHI--------VLPDRDNGRGPA-------YYCVIHK 312

Query: 441 L 441
           +
Sbjct: 313 I 313


>gi|74026108|ref|XP_829620.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70835006|gb|EAN80508.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 335

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 25/241 (10%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267
              ++  F     +  D + ++ V+L G      VLDLCA  GGK    +Q + + A +T
Sbjct: 88  PPPAIDEFNVKAHYPLDYTTALAVELLGVQQFDLVLDLCAGVGGKSIAISQFLSNSASLT 147

Query: 268 ALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT--- 321
           A +    R  +LR N+            + +     +     +  VLVDAPC+       
Sbjct: 148 ANEQRGDRCARLRRNIKEYVPSNYVPVTVTQRKPETWHDPSTYHRVLVDAPCTGERQLLQ 207

Query: 322 -IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
              +H            V+ +  QR LLL+ I   +PGG +V++ CS+   +++EVV++ 
Sbjct: 208 HSGKHAVSPLHWSLQACVELSHTQRGLLLRSIETCRPGGRIVYTTCSISPLENDEVVREA 267

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           L+ +   VEL+       +  +            + PD               +   + +
Sbjct: 268 LKRTRCQVELMHPPVPIGEKTEFGHI--------VLPDRDNGRGPA-------YYCVIHK 312

Query: 441 L 441
           +
Sbjct: 313 I 313


>gi|290993041|ref|XP_002679142.1| NOL1/NOP2/sun family protein [Naegleria gruberi]
 gi|284092757|gb|EFC46398.1| NOL1/NOP2/sun family protein [Naegleria gruberi]
          Length = 463

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 140/428 (32%), Gaps = 61/428 (14%)

Query: 56  TLRFLPRIDAVLDF---VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
            L++   ID ++            +K    Q +LR+ + + L+ + +  +      E  K
Sbjct: 56  VLKYHKIIDKIIAESGLFKKKPSLKKD---QGMLRIIMFEALFGEKSGDSTSIE--ELWK 110

Query: 113 RDKE-----------------------NRHFAKLVNSILRRVSREKIELLQRIAGISIIP 149
           R  +                        +      N         K +  Q       + 
Sbjct: 111 RYDKINFDLFKLGRTEYATWKSLLDKEKKKLGYTTNEGFVDPKYAKSKTHQHDNPEIELI 170

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML-PTGGIRLKEL 208
            + +        +E +   S+       + L    D +     +          + L   
Sbjct: 171 RYVRVNTLKTTKEEVINKFSELGYEYRPVGLDKTDDFDKNEKSIVEDNHLTNDVLALYPS 230

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTL------NNLSVLDLCAAPGGKTAQLI-- 260
             ++  L          QD S+  P  L           N  ++D C+APG KT  L   
Sbjct: 231 NVTLHDLEMIKSYEIIAQDKSSCFPPFLIHKELGGKLGKNDCLIDACSAPGNKTCYLAAL 290

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPC 316
               ++ A + +K R E L+  +        +    D     P         A+++D  C
Sbjct: 291 FPSNQIYAYERNKNRYETLKNRMVLAGASNVECKLDDFLQTNPSDPKFKNVKAIMLDPSC 350

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEE 375
           S +G    +     +   + ++    FQ KLL    +F  P    + +S CS+ ++++E 
Sbjct: 351 SGSGIGHGN-----SIKKERLLSLQQFQLKLLTHCFNF--PNVQFISYSTCSVCEEENEC 403

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           V +  L++S    E+V      W+   +  +   +  +R+ P             +GFF 
Sbjct: 404 VTEMGLKASNGAFEVV-HTFPEWEHRGLESSPVGDKCVRVDP--------KRDKTNGFFV 454

Query: 436 VALRRLIQ 443
           V  RR+ +
Sbjct: 455 VCFRRVNK 462


>gi|71737269|ref|YP_276619.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257483271|ref|ZP_05637312.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289629163|ref|ZP_06462117.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289647768|ref|ZP_06479111.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298488893|ref|ZP_07006917.1| Transcription termination protein NusB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|119390796|sp|Q48DC2|NUSB_PSE14 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71557822|gb|AAZ37033.1| N utilization substance protein B [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298156568|gb|EFH97664.1| Transcription termination protein NusB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320330417|gb|EFW86396.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869912|gb|EGH04621.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330874033|gb|EGH08182.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330888050|gb|EGH20711.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330988217|gb|EGH86320.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331012494|gb|EGH92550.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 165

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNV---DGAYFRELLHGVATNKT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141

Query: 121 A 121
            
Sbjct: 142 K 142


>gi|148665818|gb|EDK98234.1| NOL1/NOP2/Sun domain family 3 [Mus musculus]
          Length = 344

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 22/291 (7%)

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220
                         +L     +  +   L   +          L  +   +P        
Sbjct: 50  WQYAILFNRFNYPFELEKALHLRGYHTVLQGALPHYPKSMKCYLSRTPDRMPSERHQTGS 109

Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSK---R 274
              +++ +A++ +PV      +  +VLDLCAAPGGK+  L+           +  +   R
Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEAVLDLCAAPGGKSVALLQCAYPGYLLCNEYDRPRGR 169

Query: 275 RLEKLRCNLDRLHLYAED-IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330
            L +   +     L     + E+D  +    +   FD VLVDAPCS+  +          
Sbjct: 170 WLRQTLESFIPQPLINVIKVSELDGREMGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKA 229

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                        Q +L+   I  ++PGG++V+S C+L K ++++V+ +VL S    V +
Sbjct: 230 AYRIHQRKNLPVLQVELVRSAIKALRPGGLLVYSTCTLSKAENQDVISEVLTSDSNIVPV 289

Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                A   S D   A + +   + + P+  +            +   L++
Sbjct: 290 DISGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGP-------MYIAKLKK 333


>gi|71411469|ref|XP_807983.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70872093|gb|EAN86132.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 954

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 95/283 (33%), Gaps = 67/283 (23%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------------K 265
            E +   Q  S+ +PV L       +VLDLCA+PG KT  +                   
Sbjct: 299 NERLISFQSTSSMLPVLLLDPRPGEAVLDLCASPGSKTTLIHDYMFGISSSSKSLLATGC 358

Query: 266 VTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTG 320
           + A D    R + L   L  +    A   I+       P       +D VLVDAPCS  G
Sbjct: 359 IVANDAVFSRTKTLSQRLQSVSPSIAVTQIQGQTLPAQPIASGGVRYDKVLVDAPCSGEG 418

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            + R             ++    Q  LL   +     GG VV+S C+L+  ++E V+  V
Sbjct: 419 RMHRDVMSWRMWHPLKAMEFFTTQVSLLRHAVELCAAGGCVVYSTCTLNPLENEAVISTV 478

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALS-------------------------------P 409
           L    + +   P           +  LS                               P
Sbjct: 479 LADGEVELIRPPHFMTADSGWHFSRGLSHWLVPSRAGGFLHTFAESEAKGEGTAVELFPP 538

Query: 410 EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           EG            +R+ P         +SG +GFF  ALR++
Sbjct: 539 EGNGEIQKALESCCLRVLPHR-------NSGAEGFFLAALRKV 574


>gi|255574263|ref|XP_002528046.1| RNA binding protein, putative [Ricinus communis]
 gi|223532576|gb|EEF34364.1| RNA binding protein, putative [Ricinus communis]
          Length = 586

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD VL+DAPCS+ G   R            +   A +QR++  Q +  V+PGG++
Sbjct: 440 FDPDSFDRVLLDAPCSALGL--RPRLFAGEETVKSLRSHAVYQRRMFDQAVKLVRPGGVI 497

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITPD- 418
           V+S C+++  ++E +V+  L +    + L P +        +     P+G++   + P  
Sbjct: 498 VYSTCTINPGENEALVRYALDTYK-FLSLAPQHLRVGGPGLVGSCEFPDGYMEEWLRPGE 556

Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438
              +            GFF    
Sbjct: 557 EELVQRFDPSSPLDTIGFFIAKF 579


>gi|316934108|ref|YP_004109090.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1]
 gi|315601822|gb|ADU44357.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1]
          Length = 173

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +               +        +    R IV+  +R  
Sbjct: 30  AARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVSGVVREQ 89

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            +ID ++D +L     L R    L+ ++R    ++ +  D+    VV   V+ A      
Sbjct: 90  KQIDPLIDDLLAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 148

Query: 118 RHFAKLVNSILRRVSREK 135
           +    +VN++L +++R+ 
Sbjct: 149 KDETGMVNAVLDQIARQF 166


>gi|289810628|ref|ZP_06541257.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 136

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRR 324
            A + S  R++ L  N+ R  +    +   D   +       FDA+L+DAPCS  G +R+
Sbjct: 21  LANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVRK 80

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
            PD L     +  +  A  QR+LL      ++PGG +V+S C+L++Q++E V   +
Sbjct: 81  DPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWL 136


>gi|114562217|ref|YP_749730.1| transcription antitermination protein NusB [Shewanella
           frigidimarina NCIMB 400]
 gi|119390819|sp|Q086C3|NUSB_SHEFN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114333510|gb|ABI70892.1| NusB antitermination factor [Shewanella frigidimarina NCIMB 400]
          Length = 134

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +      +     + D+E+     +     D    R ++     
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSQ---NKVADVEHEFLTEQNTDGVDVAYFRELLTGVAS 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +ID +L   L           + ++R++  ++ +  DV     ++  +E AK     
Sbjct: 58  KTSQIDELLKPHLDRKFEEVSPVEKAIVRLATYELTFRKDVPFKVAINEGIELAKAF-GA 116

Query: 118 RHFAKLVNSILRRVSRE 134
               K VN +L ++ + 
Sbjct: 117 EDSHKFVNGLLDKLVKH 133


>gi|330812010|ref|YP_004356472.1| transcription antitermination protein NusB [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327380118|gb|AEA71468.1| transcription antitermination protein NusB [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 166

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR +++  L      + SL  +      D+ F   S  D    R I++   +F   
Sbjct: 27  KRREARQLATQALYQWHMAKQSLNEIEAQFRVDNDF---SDVDGAYFREILHGVPQFKTE 83

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK         
Sbjct: 84  IDTALTPCLDLTIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGHK 143


>gi|170063668|ref|XP_001867201.1| williams-beuren syndrome critical region protein [Culex
           quinquefasciatus]
 gi|167881252|gb|EDS44635.1| williams-beuren syndrome critical region protein [Culex
           quinquefasciatus]
          Length = 468

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 19/230 (8%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275
            +  + +Q+ +  +P  L        V+D+CAAPG KT  L   + +  +V A++    R
Sbjct: 67  HKQKFVLQNKACLLPTYLLNPAKKSVVMDMCAAPGLKTTHLANLMKNKGRVYAVERDANR 126

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRD 333
            + L        +     I  D      ++    + +L+D  CS +G + R   +    D
Sbjct: 127 YKLLCDYSADFGV--IKTINDDCLLVGDEQAPGVEYILLDPSCSGSGMVDR-LKLNEEID 183

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
              + +    Q KLL   ++       +V+S CS+  +++E +VQ  L       +LV  
Sbjct: 184 KQRLYRLGGLQYKLLTHAMNAFPAAKRIVYSTCSIFPEENEAIVQGAL-RHNGHWKLVDA 242

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD---GFFAVALRR 440
            +A  K      +          P + EK        D   G F   L R
Sbjct: 243 KAALGKEWHNVGSPD-------YPGIGEKCLYARPESDLTIGMFVAVLER 285


>gi|254253011|ref|ZP_04946329.1| Transcription termination factor [Burkholderia dolosa AUO158]
 gi|124895620|gb|EAY69500.1| Transcription termination factor [Burkholderia dolosa AUO158]
          Length = 145

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    S   +     G   +    + D+ L+ AI++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKDLLDAILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               +   +   L   + +     + +L ++  ++  +++     V++ AVE AK    +
Sbjct: 58  EHATLVEAIAPALDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|149181858|ref|ZP_01860347.1| transcription antitermination protein NusB [Bacillus sp. SG-1]
 gi|148850397|gb|EDL64558.1| transcription antitermination protein NusB [Bacillus sp. SG-1]
          Length = 133

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    ++    L   Y D+            +  +VN      
Sbjct: 1   MKRRT-AREKALQALFQMDMSGMTADEALTNVYEDTPSDE-------YLENLVNGATENK 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +ID ++   L   S  R     + +LRV+V ++L   DV    V++ A+E AK    + 
Sbjct: 53  EKIDGLIKENLEKWSFDRLAKVDRNILRVAVYELLEADDVPSKVVINEAIEIAKTY-GDD 111

Query: 119 HFAKLVNSILRR 130
              K +N +L +
Sbjct: 112 QSGKFINGVLSK 123


>gi|146083585|ref|XP_001464781.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068875|emb|CAM59809.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1175

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 59/195 (30%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +D VLVDAPCS  G + R             ++    Q  LL + +   K GG +V++ C
Sbjct: 530 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRIVYATC 589

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------- 413
           +L+  ++E VV  VLR+    VEL+P      +  ++       G +             
Sbjct: 590 TLNPLENEAVVSAVLRACGGAVELIPPPRPLPRRTELQTEEDVGGSVPPLRLTAGLRSWD 649

Query: 414 -----------------------RITPDML----------------------EKIDGVSS 428
                                  R+ PDM                        ++    +
Sbjct: 650 VPSGAGGFLCSAAEAYAQGESAARLPPDMFAPASAGAEGDRTDISGALQRCCRRVMPHLN 709

Query: 429 GM-DGFFAVALRRLI 442
           G  DGFF   L +  
Sbjct: 710 GNADGFFVAVLEKRA 724


>gi|322498196|emb|CBZ33271.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1175

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 59/195 (30%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +D VLVDAPCS  G + R             ++    Q  LL + +   K GG +V++ C
Sbjct: 530 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRIVYATC 589

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------- 413
           +L+  ++E VV  VLR+    VEL+P      +  ++       G +             
Sbjct: 590 TLNPLENEAVVSAVLRACGGAVELIPPPRPLPRRTELQTEEDVGGSVPPLRLTAGLRSWD 649

Query: 414 -----------------------RITPDML----------------------EKIDGVSS 428
                                  R+ PDM                        ++    +
Sbjct: 650 VPSGAGGFLCSAAEAYAQGESAARLPPDMFAPTSAGAEGDRTDISGALQRCCRRVMPHLN 709

Query: 429 GM-DGFFAVALRRLI 442
           G  DGFF   L +  
Sbjct: 710 GNADGFFVAVLEKRA 724


>gi|312383507|gb|EFR28570.1| hypothetical protein AND_03366 [Anopheles darlingi]
          Length = 461

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 146/436 (33%), Gaps = 75/436 (17%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV-LI 72
           +L  V  ++ S+  LL  E    A R +   D++LV          LP+I+A++  + L 
Sbjct: 1   MLRQVTEEKKSIKTLLRDEKHFRAGRTI--MDRLLV---------NLPQINAIIAHIDLT 49

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           +  PR    L + L   ++++LY          L VE  +R +     A         V 
Sbjct: 50  TKEPRLNPWLARAL---ISELLYGRGELLGA-SLPVECVRRHETEIRKAYEATKASIPVV 105

Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192
           +   E         ++     +RL    G                               
Sbjct: 106 QRFEEPRFVRVNTELLNLEGAKRLMQEEGW------------------------------ 135

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           +                +S+                +  +P  L        VLD+C+AP
Sbjct: 136 ILVDEEFPDYQSFLNRVQSLTDSEY----------MACLVPTYLLKPPKKSVVLDMCSAP 185

Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           G K   L   + +  ++ A++ +  R + L        +     I+ D  D   +++   
Sbjct: 186 GMKATHLASLMKNKGRLYAVERNAERYKLLCQYAAPFGV--IKTIQADCLDLTDEQVPGV 243

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           + +L+D  CS +G + R   +    D   + K A  Q KLL   ++       +V+S CS
Sbjct: 244 EYILLDPSCSGSGMLDR-LRMPEPVDEGRLYKLAGLQYKLLSHAMNSFPNARRIVYSTCS 302

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           +  +++E++V  VL        L+   +   K      +          P + E+     
Sbjct: 303 IHPEENEKLVMGVL-RHNSHFRLLDARTELGKEWLNLGSPD-------YPGVDERCLYAR 354

Query: 428 SGMD---GFFAVALRR 440
           S  D   G F     R
Sbjct: 355 SETDLTIGMFVAVFER 370


>gi|254180977|ref|ZP_04887575.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1655]
 gi|184211516|gb|EDU08559.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1655]
          Length = 145

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    + + +     G   +    + D+ L+  I++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNAAPSEIDAQLRGALGY---DKADKTLLDTILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   +   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|239932444|ref|ZP_04689397.1| putative Sun-family protein [Streptomyces ghanaensis ATCC 14672]
          Length = 150

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 13/139 (9%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD VLVD PC+  G +RR P+  W R  +D+   A  QR LL   +  V+ GG+V
Sbjct: 23  WRPGSFDRVLVDVPCTGLGALRRRPEARWRRRPEDLAGFAPLQRGLLRTALESVRVGGVV 82

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
            ++ CS    ++  VV  +L   P   EL+          D+         +++ P +  
Sbjct: 83  GYATCSPHLAETRAVVADLLGQFP-DAELIDARPLLPGVPDLGEGPD----VQLWPHL-- 135

Query: 422 KIDGVSSGMDGFFAVALRR 440
                  G D  +   +RR
Sbjct: 136 ------HGTDAMYLALIRR 148


>gi|85711195|ref|ZP_01042255.1| Transcription termination factor NusB [Idiomarina baltica OS145]
 gi|85695108|gb|EAQ33046.1| Transcription termination factor NusB [Idiomarina baltica OS145]
          Length = 139

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +      + +   +      D+     S+ D      ++     
Sbjct: 1   MKPAARRKARKLAVQAVYSWQLSQNTFNEIEAQFLTDNDT---SKVDVDYFLELLRGVGA 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
           F   +D  +   L   +         +LR++  ++    DV     ++ A+E AK     
Sbjct: 58  FYKSLDEAIAPYLDRPISELDPVELAVLRIAAYELRERYDVPYKVAINEAIELAKSF-GA 116

Query: 118 RHFAKLVNSILRR 130
               + VN +L +
Sbjct: 117 DDSHRFVNGVLDK 129


>gi|290893532|ref|ZP_06556515.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-071]
 gi|290556877|gb|EFD90408.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-071]
          Length = 128

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +SL   +     D     + +        +V   +   
Sbjct: 1   MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDERDDYMEK--------LVEGVMANK 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA+++  L +  + R       LLR+SV +I YL DV +   ++ ++E AK    + 
Sbjct: 52  VEIDAIIEPNLDNWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110

Query: 119 HFAKLVNSILRR 130
             +K +N +L  
Sbjct: 111 KSSKFINGVLAN 122


>gi|302189354|ref|ZP_07266027.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae 642]
          Length = 165

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        SL  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQWHMAGHSLNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNKT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 141 HKFVNGVLDK 150


>gi|30725798|ref|NP_849256.1| putative methyltransferase NSUN3 [Mus musculus]
 gi|81899873|sp|Q8CCT7|NSUN3_MOUSE RecName: Full=Putative methyltransferase NSUN3; AltName:
           Full=NOL1/NOP2/Sun domain family member 3
 gi|26327953|dbj|BAC27717.1| unnamed protein product [Mus musculus]
 gi|116138396|gb|AAI25629.1| NOL1/NOP2/Sun domain family member 3 [Mus musculus]
 gi|116138399|gb|AAI25631.1| NOL1/NOP2/Sun domain family member 3 [Mus musculus]
          Length = 348

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 22/291 (7%)

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220
                         +L     +  +   L   +          L  +   +P        
Sbjct: 50  WQYAILFNRFNYPFELEKALHLRGYHTVLQGALPHYPKSMKCYLSRTPDRMPSERHQTGS 109

Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSK---R 274
              +++ +A++ +PV      +  +VLDLCAAPGGK+  L+           +  +   R
Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEAVLDLCAAPGGKSVALLQCAYPGYLLCNEYDRPRGR 169

Query: 275 RLEKLRCNLDRLHLYAED-IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330
            L +   +     L     + E+D  +    +   FD VLVDAPCS+  +          
Sbjct: 170 WLRQTLESFIPQPLINVIKVSELDGREMGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKA 229

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                        Q +L+   I  ++PGG++V+S C+L K ++++V+ +VL S    V +
Sbjct: 230 AYRIHQRKNLPVLQVELVRSAIKALRPGGLLVYSTCTLSKAENQDVISEVLTSDSNIVPV 289

Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
                A   S D   A + +   + + P+  +            +   L++
Sbjct: 290 DISGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGP-------MYIAKLKK 333


>gi|302541095|ref|ZP_07293437.1| transcription antitermination factor NusB [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458713|gb|EFL21806.1| transcription antitermination factor NusB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 152

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  S+  +L      +               +V       
Sbjct: 1   MAARNKARKRAFQILFEADQRGSSVQTVLADWIRHARTDDRQPPVSEYTMQLVEGYAEHT 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID +L    +  +L R     + +LR+   ++++ D   D  V+D AV+ AK      
Sbjct: 61  ARIDELLATYAVGWTLDRMPVVDRNILRLGAYELVWEDATPDAVVIDEAVQLAKEF-STD 119

Query: 119 HFAKLVNSILRR 130
                VN +L R
Sbjct: 120 DSPSFVNGLLGR 131


>gi|226942829|ref|YP_002797902.1| transcription antitermination protein NusB [Azotobacter vinelandii
           DJ]
 gi|226717756|gb|ACO76927.1| transcription antitermination factor NusB [Azotobacter vinelandii
           DJ]
          Length = 131

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 5/120 (4%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              L         L  +      D+ F  +   D      I++   R    ID     +L
Sbjct: 1   MQALYQWHVAGQPLNEIEAQFRVDNDFSTV---DGAYFHEILHGVPRQKTEIDEAFAPLL 57

Query: 72  ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              L         +LR+S  ++   LDV    V++  +E AK         K VN +L +
Sbjct: 58  DRPLAEVDPVELAILRLSTYELSNRLDVPYRVVINEGIELAKVFGATDG-HKFVNGVLDK 116


>gi|325525004|gb|EGD02919.1| transcription antitermination protein NusB [Burkholderia sp. TJI49]
          Length = 145

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    S   +     G   +    + D+ L+ AI++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKALLDAILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   L   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHATLVEALTPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|323359977|ref|YP_004226373.1| transcription termination factor [Microbacterium testaceum StLB037]
 gi|323276348|dbj|BAJ76493.1| transcription termination factor [Microbacterium testaceum StLB037]
          Length = 136

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVT 56
           M +   AR  +  +L     +       L +     A R  S+ D+       R IV+  
Sbjct: 1   MSARTKARKRALDILFQADVRG----EELPIMLAAEAKRAASEPDRQASWLYARDIVDGV 56

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
           +     ID  +       SL R     + LLR+   +ILY D V     +D AVE AK  
Sbjct: 57  IDNRDAIDEQITTFSKDWSLQRMPAVDRALLRIGTWEILYNDEVPTAVAIDEAVELAKEF 116

Query: 115 KENRHFA 121
             +   +
Sbjct: 117 STDDSGS 123


>gi|16800464|ref|NP_470732.1| transcription antitermination protein NusB [Listeria innocua
           Clip11262]
 gi|22095959|sp|Q92BZ5|NUSB_LISIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16413869|emb|CAC96627.1| lin1396 [Listeria innocua Clip11262]
 gi|313619077|gb|EFR90883.1| transcription antitermination factor NusB [Listeria innocua FSL
           S4-378]
 gi|313623883|gb|EFR93998.1| transcription antitermination factor NusB [Listeria innocua FSL
           J1-023]
          Length = 128

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +SL   +     D     +          +V   +   
Sbjct: 1   MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYME--------QLVEGVMANK 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA+++  L +  + R       LLR+SV +I YL DV +   ++ ++E AK    + 
Sbjct: 52  AEIDAIIEPNLDNWRIDRLNKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110

Query: 119 HFAKLVNSILRR 130
             +K +N +L  
Sbjct: 111 KSSKFINGVLAN 122


>gi|254391339|ref|ZP_05006543.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811554|ref|ZP_06770197.1| Transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440061|ref|ZP_08214795.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705030|gb|EDY50842.1| transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324153|gb|EFG05796.1| Transcription antitermination protein NusB [Streptomyces
           clavuligerus ATCC 27064]
          Length = 142

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ +S+  +L      S               +V    ++ 
Sbjct: 1   MAARNKARKRAFQILFEADQRDVSVQTVLADWIRHSRTDTRQPPVSEYTMELVEGYAQYA 60

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
           PRID ++        L R     + +LR+   +++++D   D  V+D AVE AK    + 
Sbjct: 61  PRIDELIATYAEGWDLDRMPVVDRNILRLGTYELVWVDGTPDAVVIDEAVELAKEFSTDE 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|71400411|ref|XP_803043.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70865607|gb|EAN81597.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 406

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 39/177 (22%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             +  FD VL D  CS  GT+R+  D+    +     +    Q ++LL+G+   K GGIV
Sbjct: 21  PSESKFDRVLCDVMCSGDGTLRKSMDMWPRWNVFQGAELHNTQIRVLLRGMMLCKKGGIV 80

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWIRIT 416
           V+S CSL+  + E VV + L  +     L+   S          +D    L+ +   R+ 
Sbjct: 81  VYSTCSLNPVEDEAVVSECLLQAKGAFRLMDPTSLVPGLVAAPGLDDWSLLTKDLKARLH 140

Query: 417 ------------------------P----------DMLEKIDGVSSGMDGFFAVALR 439
                                   P              ++        GFF   + 
Sbjct: 141 TMEEAQVFAETSASSGISYRATMFPNKARLQEQNIHYTRRVLPHLQDTGGFFVAVME 197


>gi|91977147|ref|YP_569806.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisB5]
 gi|119390810|sp|Q136T4|NUSB_RHOPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91683603|gb|ABE39905.1| NusB antitermination factor [Rhodopseudomonas palustris BisB5]
          Length = 174

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +               +        +    R IV+  +R  
Sbjct: 31  AARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPAEAAFFRDIVSGVVRDQ 90

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            ++D ++D  L     L R    ++ ++R    ++ +  D+    VV   V+ A      
Sbjct: 91  TKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 149

Query: 118 RHFAKLVNSILRRVSREK 135
           +    +VN++L +++R+ 
Sbjct: 150 KDETGMVNAVLDQIARQF 167


>gi|92117364|ref|YP_577093.1| transcription antitermination protein NusB [Nitrobacter
           hamburgensis X14]
 gi|119390788|sp|Q1QMB4|NUSB_NITHX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91800258|gb|ABE62633.1| NusB antitermination factor [Nitrobacter hamburgensis X14]
          Length = 160

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  +            +        +    R +V   +R  
Sbjct: 17  AARLAAVQALYQMEIGGAGINDVFAEFESHWLGSEVEGDKYLPAEAAFFRDVVAGVVRDQ 76

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            R+D ++D  L     L R    L+ +LR    ++ +  DV    VV   V+ A      
Sbjct: 77  ARLDPLIDDALSRGWPLKRIDAILRAVLRAGSYELEHRKDVPARVVVSEYVDVAHAFI-E 135

Query: 118 RHFAKLVNSILRRVSREK 135
           +    +VN++L +++R  
Sbjct: 136 KEEVGMVNAVLDQIARRF 153


>gi|90424163|ref|YP_532533.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris BisB18]
 gi|119390809|sp|Q214H2|NUSB_RHOPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|90106177|gb|ABD88214.1| NusB antitermination factor [Rhodopseudomonas palustris BisB18]
          Length = 169

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      L  +            +        +Q   + +V+  +R  
Sbjct: 25  AARLAAVQALYQMDVGGAGLNDIFAEFESHWLGNEVEGDQYLPAEQAFFQDVVSGVVRDQ 84

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            ++D ++D  L     L R    L+ ++R    ++ +  DV    VV   V+ A    E 
Sbjct: 85  AKLDPLIDVALAKGWPLARIDAILRAVMRAGAYELEHRKDVPARVVVSEYVDVANAFVEG 144

Query: 118 RHFAKLVNSILRRVSREK 135
                +VN++L +++R+ 
Sbjct: 145 EE-TGMVNAVLDQIARQF 161


>gi|195569733|ref|XP_002102863.1| GD20129 [Drosophila simulans]
 gi|194198790|gb|EDX12366.1| GD20129 [Drosophila simulans]
          Length = 534

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 16/235 (6%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
             P      + +Q+ +  +  +L       +VLD+CAAPG KT  +     +   + A++
Sbjct: 301 RHPLVHGKRFILQNKATCLAAELLAPPTGATVLDMCAAPGMKTMHICNVMQNKGCIYAVE 360

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328
              +R   L    +         I  DA D  P++  D   +LVD  CS +G   R    
Sbjct: 361 QDYKRYNTLCDITEEAGCAIVKPIFSDALDLTPERFADVEYILVDPSCSGSGMQNRMTVC 420

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
              +D   + K    Q K+L   +S       + +  CSL K+++E+VVQ+ L+ +P   
Sbjct: 421 DEPKDDRRLQKLQGLQIKILSHAMSSFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSYK 480

Query: 389 EL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            L     L + +    D       +  +   P         S   DG F     +
Sbjct: 481 LLSCKKALRNKWHNVGDTDYPNIGKNVLYCLP--------ESDLTDGIFLALFEK 527


>gi|192291385|ref|YP_001991990.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris TIE-1]
 gi|238692600|sp|B3QJK9|NUSB_RHOPT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|192285134|gb|ACF01515.1| NusB antitermination factor [Rhodopseudomonas palustris TIE-1]
          Length = 174

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +               +        +    R IV   +R  
Sbjct: 30  AARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVAGVVREQ 89

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            +ID ++D +L     L R    L+ ++R    ++ +  D+    VV   V+ A      
Sbjct: 90  KQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 148

Query: 118 RHFAKLVNSILRRVSREK 135
           +    +VN++L +++R  
Sbjct: 149 KDETGMVNAVLDQIARRF 166


>gi|302338884|ref|YP_003804090.1| Fmu (Sun) domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636069|gb|ADK81496.1| Fmu (Sun) domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 297

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 26/258 (10%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +L     P+    LK  P  +    G  +   +  D ++    +  G L    VLD+CAA
Sbjct: 54  ELYGERWPSLAEALKREPRPVPFSEGLGKS--YYLDQASIDTAKALGALPEEEVLDMCAA 111

Query: 252 PGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA------EDIIEMDAFDYC 302
           PGGK    A  +     + A D S  R  +L+  +    +            +   +   
Sbjct: 112 PGGKSLVIAAAMRGKGSLIANDRSASRRARLKRVIAEHLIPDYASIVEITSHDASKWGLY 171

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            +  +D +L+DAPCSS   +   P  L         + A     +       ++PGG+++
Sbjct: 172 EQNRYDRILLDAPCSSERHVLLDPVHLERWSPSRTRRLAVQAFAMAAAAADALRPGGVLL 231

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C++   +++ V++K+L+     +E   L+  Y ++       +  G I + PD    
Sbjct: 232 YSTCTISPFENDGVIEKLLKRRGDFMEKAELSLPYGEA-------TRFGMI-VLPDREAG 283

Query: 423 IDGVSSGMDGFFAVALRR 440
                      +A  LR+
Sbjct: 284 KGP-------MYAALLRK 294


>gi|109897640|ref|YP_660895.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c]
 gi|119390797|sp|Q15W97|NUSB_PSEA6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|109699921|gb|ABG39841.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c]
          Length = 140

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +      +  L  +   E        +   D      ++   +R
Sbjct: 1   MKPAARRKARELAVQAVYSWQMSKNPLDQI---ELSIVTSNNMQDVDTEYFLELLRAVVR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
               +DA +   L             +LR++  +++  +DV    V++ A+E AK     
Sbjct: 58  RTAELDAKIKPYLGRLPEELDPVENAILRLATYELVERIDVPYKVVINEAIELAKSF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 EESHKFVNGVLDK 129


>gi|323475333|gb|ADX85939.1| Fmu (Sun) domain protein [Sulfolobus islandicus REY15A]
 gi|323478057|gb|ADX83295.1| Fmu (Sun) domain protein [Sulfolobus islandicus HVE10/4]
          Length = 368

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 127/352 (36%), Gaps = 35/352 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
                 +L  E +KR   + +         +     + +     +     P W +E+L  
Sbjct: 35  PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90

Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
                 +        +             +  ++E+   +  A       I++K+ P  +
Sbjct: 91  LLDINALKRKLSERWMWARVNILKTDIDKIYRELESQNIEFEADKNFYYMIKIKKSPVRL 150

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269
            SL    +    + D ++S+ V+         ++DL +APG K +  ++   + A+    
Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210

Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           DV  +RL +    L R  +      II  D+         D +L+DAPCSS+G I   P 
Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269

Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +L     ++ I K A  Q+ LL + +        +V++ CSL  ++ E V++        
Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +  +P ++         +        R  P +           +GFF   L
Sbjct: 323 DIAEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363


>gi|221051886|ref|XP_002257519.1| NOL1/NOP2/sun family methyltransferase [Plasmodium knowlesi strain
           H]
 gi|193807349|emb|CAQ37854.1| NOL1/NOP2/sun family methyltransferase [Plasmodium knowlesi strain
           H]
          Length = 1086

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 58/236 (24%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEM------------DAFDYCPKKLFDAVLVDA 314
            A D + +R   L   L  +H     +               D  +   K+ FD+VL D 
Sbjct: 292 IANDANFKRCCMLFHRLKNIHSNCLVVTNNNAINFPYIYMKDDEGNTNEKRYFDSVLCDV 351

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  GT+R+  ++    +  +       Q  +L + I   K GG +V+S CSL+  ++E
Sbjct: 352 PCSGDGTVRKDRNIWLNWNPFNAYNLFQMQVSILKRSIELTKEGGNIVYSTCSLNPIENE 411

Query: 375 EVVQKVLR--SSPIPVELVPLNSAYWKSIDMAMALSPEG----------------WIR-- 414
            V+ +V     +   ++L+   +     ++    ++                   +++  
Sbjct: 412 AVICEVFNSVENRNCLKLMNFGNELIDKLNFKQGITEWKVMMDDQWFDTYEEYCSYLQNK 471

Query: 415 ----------------ITPD----------MLEKIDGVSSGMDGFFAVALRRLIQP 444
                            TP            +++         GFF   +++  +P
Sbjct: 472 EHGKYKKIYDKIQQGMFTPGEEFMNEINLKYVKRFFPHHYNAGGFFIAVIKKCGKP 527


>gi|323144126|ref|ZP_08078765.1| transcription antitermination factor NusB [Succinatimonas hippei
           YIT 12066]
 gi|322416103|gb|EFY06798.1| transcription antitermination factor NusB [Succinatimonas hippei
           YIT 12066]
          Length = 143

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +   +        S   +      D   +     D   +  +++  +     I
Sbjct: 13  RHKARHFAMQAIYQWQMTGQSAGEIERQFLEDQPIQG---ADLDYMHDLISGVVANFEHI 69

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAK 122
           D V +  L   L       + +LR+   ++LY  ++    V++ ++  AK     +   K
Sbjct: 70  DEVYEPFLSRPLKDLDQVDKAILRLGTFELLYRQEIPFRVVINESIMLAKEF-AEQDSHK 128

Query: 123 LVNSILRR 130
            VN +L +
Sbjct: 129 FVNGVLDK 136


>gi|77164321|ref|YP_342846.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707]
 gi|119390790|sp|Q3JCY0|NUSB_NITOC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|76882635|gb|ABA57316.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707]
          Length = 148

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 1   MKSGM-NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +    AR  +   L         +  +          + +   D    + ++    + 
Sbjct: 1   MSNRRSKARTAALQGLYQWQLMGQDVDKIDIEFIV----QDIRGIDHAYFQELLRGVPQR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              +D  L   L   +         +LR+   ++L   ++    V++ A+E AKR     
Sbjct: 57  QGELDECLGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRF-GAE 115

Query: 119 HFAKLVNSILRR 130
           H  + VN IL +
Sbjct: 116 HGHRYVNGILDK 127


>gi|149909343|ref|ZP_01897999.1| transcription antitermination protein NusB [Moritella sp. PE36]
 gi|149807660|gb|EDM67608.1| transcription antitermination protein NusB [Moritella sp. PE36]
          Length = 140

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  ++  +      + ++  +      D  F   S  D    R +V     
Sbjct: 1   MKPSERSKARQFATQAIYQWQMTQETVANIEHQFVTDQDF---SGTDATYFRELVLGVSL 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
               +D ++   L   L       + +LR+S  ++L   DV    V++ ++E AK D   
Sbjct: 58  NSAELDELMSPFLSRPLNDLDLVEKAILRLSTFELLKRQDVPYKVVINESIELAK-DFGA 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 EDSHKFVNGVLDK 129


>gi|87121731|ref|ZP_01077618.1| NusB protein [Marinomonas sp. MED121]
 gi|86162982|gb|EAQ64260.1| NusB protein [Marinomonas sp. MED121]
          Length = 167

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +   +         +  +      D     L   D+   R ++         +
Sbjct: 27  RSAARSFALQAVYQWQMNHAPVNEIEAQFAVDH---DLGTCDKAYFRELLQGVTAKAKSL 83

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122
           D + + +L   L          LR+   ++   LDV     ++ +VE AK    +    K
Sbjct: 84  DDLFEELLDRPLAELDPIELATLRIGSYELAERLDVPYRVAINESVELAKSFGASES-HK 142

Query: 123 LVNSILRR 130
            VN IL +
Sbjct: 143 YVNGILDK 150


>gi|195353701|ref|XP_002043342.1| GM10043 [Drosophila sechellia]
 gi|194127456|gb|EDW49499.1| GM10043 [Drosophila sechellia]
          Length = 534

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 16/235 (6%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
             P      + +Q+ +  +  +L       +VLD+CAAPG KT  +     +   + A++
Sbjct: 301 RHPLVHGKRFILQNKATCLAAELLAPPTGATVLDMCAAPGMKTVHICNVMQNKGCIYAVE 360

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328
              +R   L    +         I  DA D  P++  D   +LVD  CS +G   R    
Sbjct: 361 QDYKRYNTLCDITEEAGCAIVKPIFSDALDLTPERFADVEYILVDPSCSGSGMQNRMTVC 420

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
              +D   + K    Q K+L   +S       + +  CSL K+++E+VVQ+ L+ +P   
Sbjct: 421 DEPKDDRRLQKLQGLQIKILSHAMSSFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSYK 480

Query: 389 EL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            L     L + +    D       +  +   P         S   DG F     +
Sbjct: 481 LLSCKKALRNKWHNVGDTDYPNIGKNVLYCLP--------ESDLTDGIFLALFEK 527


>gi|115534021|ref|NP_497088.3| hypothetical protein Y53F4B.4 [Caenorhabditis elegans]
 gi|85539533|emb|CAB70100.3| C. elegans protein Y53F4B.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 285

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 100/264 (37%), Gaps = 24/264 (9%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGF---AEGVWWVQDASASIPVQLFGTLNNLSVLDL 248
           K + V +      L     +I +   +    +    +QD ++ +P  L        V D 
Sbjct: 28  KDDEVYVDPHVENLIIFAPNIQNFYEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDT 87

Query: 249 CAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----FDY 301
           CAAPG KT+    ++ +  KV A+D +  R+  ++  LD   +        D        
Sbjct: 88  CAAPGMKTSHAAAIMENQGKVWAMDRAADRVATMKQLLDASKVAIASSFCGDFLKTDVTD 147

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRDTDDIVKSACFQRKLLLQGISFVKPG-G 359
                    +VD PCS +G ++R  ++     + + + K    Q  +L   +    PG  
Sbjct: 148 KKFSKVKFAIVDPPCSGSGIVKRMDEITGGNAEKERLEKLKNLQAMILKHALKL--PGLK 205

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
             V+S CS+ ++++E+VV +VL  +       L       W    +      E  +R  P
Sbjct: 206 RAVYSTCSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEWTYRGLKTYEVGEHCLRANP 265

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
            +           +GFF     R+
Sbjct: 266 KVTL--------TNGFFVAVFERV 281


>gi|71279330|ref|YP_268274.1| transcription termination/antitermination factor NusB [Colwellia
           psychrerythraea 34H]
 gi|119390761|sp|Q485J1|NUSB_COLP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71145070|gb|AAZ25543.1| transcription termination/antitermination factor NusB [Colwellia
           psychrerythraea 34H]
          Length = 138

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +      +  +  +      D++ R     D    + ++     
Sbjct: 1   MKPSPRRKARELAVQAVYSWQVSKNPVNDIEVNFIADNSKRRF---DIEYFQLLLRGVTT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            +  ID  +   +   L       + +LRV+V ++    DV    V++ A+E AK    +
Sbjct: 58  NIGSIDEAIIPYVDRPLDDIDQVEKAILRVAVFELKDCTDVPYRVVINEAIELAKSFAAD 117

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 118 DS-HKFVNGVLDK 129


>gi|39935796|ref|NP_948072.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris CGA009]
 gi|81562525|sp|Q6N688|NUSB_RHOPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39649649|emb|CAE28171.1| antitermination factor, NusB [Rhodopseudomonas palustris CGA009]
          Length = 174

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 9/146 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +               +        +    R IV   +R  
Sbjct: 30  AARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVAGVVREQ 89

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            +ID ++D +L     L R    L+ ++R    ++ +  D+    VV   V+ A      
Sbjct: 90  KQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 148

Query: 118 RHFAKLVNSILRRVSREKIELLQRIA 143
           +    +VN++L +++R   E     +
Sbjct: 149 KDETGMVNAVLDQIARRFREDEFTRS 174


>gi|297155776|gb|ADI05488.1| transcription antitermination protein NusB [Streptomyces
           bingchenggensis BCW-1]
          Length = 150

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  S+  +L      +               +V    ++ 
Sbjct: 1   MAARNKARKRAFQILFEADQRGTSVQTVLADWIRHARTDDRQPPVSEYTMQLVEGYAQYT 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +  +L R     + +LR+   ++++ D   D  V+D AV+ AK    + 
Sbjct: 61  ARIDELISTYAVGWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAKEFSTDD 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|161525612|ref|YP_001580624.1| transcription antitermination protein NusB [Burkholderia
           multivorans ATCC 17616]
 gi|189349659|ref|YP_001945287.1| transcription antitermination protein NusB [Burkholderia
           multivorans ATCC 17616]
 gi|221201158|ref|ZP_03574198.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2M]
 gi|221206389|ref|ZP_03579402.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2]
 gi|221213666|ref|ZP_03586640.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD1]
 gi|238687024|sp|A9AF25|NUSB_BURM1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160343041|gb|ABX16127.1| NusB antitermination factor [Burkholderia multivorans ATCC 17616]
 gi|189333681|dbj|BAG42751.1| N utilization substance protein B [Burkholderia multivorans ATCC
           17616]
 gi|221166455|gb|EED98927.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD1]
 gi|221173698|gb|EEE06132.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2]
 gi|221179008|gb|EEE11415.1| transcription antitermination factor NusB [Burkholderia multivorans
           CGD2M]
          Length = 145

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    S   +     G   +    + D+ L+ AI++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKALLDAILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               +   L   L   + +     + +L ++  ++  +++     V++ AVE AK    +
Sbjct: 58  EHATLVDALTPSLDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|86159160|ref|YP_465945.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197123232|ref|YP_002135183.1| NusB antitermination factor [Anaeromyxobacter sp. K]
 gi|220918021|ref|YP_002493325.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
 gi|119372275|sp|Q2ILH8|NUSB_ANADE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689890|sp|B4UIM1|NUSB_ANASK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772609|sp|B8JEW3|NUSB_ANAD2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85775671|gb|ABC82508.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196173081|gb|ACG74054.1| NusB antitermination factor [Anaeromyxobacter sp. K]
 gi|219955875|gb|ACL66259.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 142

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 1   MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M S    AR  +   L  +      +   L   +           D  L   +V    + 
Sbjct: 1   MTSRRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMD--LAEGLVRGVAQH 58

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              +D  ++ V  +  L R     + +LR++V ++L  DV    V++ A+E  K+   + 
Sbjct: 59  RRAVDEAIEAVSTNWRLDRMAKVDRNVLRLAVFELLRTDVPVKVVINEAIELGKKY-GSE 117

Query: 119 HFAKLVNSILRR 130
                VN +L +
Sbjct: 118 SSGAFVNGVLDK 129


>gi|215430294|ref|ZP_03428213.1| putative fmu protein [Mycobacterium tuberculosis EAS054]
 gi|289753489|ref|ZP_06512867.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
 gi|289694076|gb|EFD61505.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
          Length = 120

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +LVDAPC+  G +RR P+  W R   D+   A  QR+LL   I+  +PGG+V+++ CS  
Sbjct: 1   MLVDAPCTGLGALRRRPEARWRRQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPH 60

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++   V   LR  P+                +   L     +++ P           G
Sbjct: 61  LAETVGAVADALRRHPVHAL-----DTRPLFEPVLAGLGEGPHVQLWPH--------RHG 107

Query: 430 MDGFFAVALRRLI 442
            D  FA ALRRL 
Sbjct: 108 TDAMFAAALRRLT 120


>gi|300123975|emb|CBK25246.2| unnamed protein product [Blastocystis hominis]
          Length = 305

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P+++FD VL+D PCS+ G     P +L     +D++    +QR+ +   +  ++ GG +V
Sbjct: 167 PREIFDRVLLDPPCSALGL---RPRLLHEVTMNDLMGYRNYQRQFIEVAVQLLRVGGTLV 223

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           +S C++D  ++EE V  ++R  P+ +  +     + K+      LS E    +       
Sbjct: 224 YSTCTIDPMENEENVAFIVREFPMRLVPIEAEWRFGKAGLENCGLSREQCEMV----QRY 279

Query: 423 IDGVSSGMDGFFAVALRRLI 442
                    GFF     +  
Sbjct: 280 NMTEKCNSIGFFVSKFEKTA 299


>gi|227831020|ref|YP_002832800.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15]
 gi|227457468|gb|ACP36155.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15]
          Length = 368

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 127/352 (36%), Gaps = 35/352 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
                 +L  E +KR   + +         +     + +     +     P W +E+L  
Sbjct: 35  PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90

Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
                 +        +             +  ++E+   +          I++K+ P  +
Sbjct: 91  LLDINALKRKLSERWMWARVNILKTGIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269
            SL    +    + D ++S+ V+      +  ++DL +APG K +  ++   + A+    
Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEISEKLVDLSSAPGIKASLYMMLTENRAETFLA 210

Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           DV  +RL +    L R  +      II  D+         D +L+DAPCSS+G I   P 
Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269

Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +L     ++ I K A  Q+ LL + +        +V++ CSL  ++ E V++        
Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +  +P ++         +        R  P +           +GFF   L
Sbjct: 323 DISEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363


>gi|284998516|ref|YP_003420284.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5]
 gi|284446412|gb|ADB87914.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 368

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 35/352 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
                 +L  E +KR   + +         +     + +     +     P W +E+L  
Sbjct: 35  PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90

Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
                 +        +             +  ++E+   +          I++K+ P  +
Sbjct: 91  LLDINALKRKLSERWMWARVNILKTGIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269
            SL    +    + D ++S+ V+         ++DL +APG K +  ++   + A+    
Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210

Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           DV  +RL +    L R  +      II  D+         D +L+DAPCSS+G I   P 
Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269

Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +L     ++ I K A  Q+ LL + +        +V++ CSL  ++ E V++        
Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +  +P ++         +        R  P +           +GFF   L
Sbjct: 323 DISEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363


>gi|269859742|ref|XP_002649595.1| 16S rRNA m(5)C 967 methyltransferase [Enterocytozoon bieneusi H348]
 gi|220066958|gb|EED44427.1| 16S rRNA m(5)C 967 methyltransferase [Enterocytozoon bieneusi H348]
          Length = 352

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 128/357 (35%), Gaps = 32/357 (8%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII--P 149
           +I      +            +   N    + +N     +    +  +     ++     
Sbjct: 15  EIYKTTTPER-----YYPLLHKVLINYDLLRDINKQAHYMKNIPLGCVMIFEILTGHLKN 69

Query: 150 EWFKERLENFYGKERVLAISDACIS-PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208
           + F+ + +   G  +++ I +  I   + +      D++   +K   +      + +K  
Sbjct: 70  DGFRRKFKKLLGNRQLIDIYEQDIYIRMNMQKGTVEDLQDLEYKETEIDNVFKILNIKNS 129

Query: 209 PESIVS-LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGA 264
            +SI   +    +    +Q   + +PV          V+D  AAPG KT Q      +  
Sbjct: 130 TQSIKKYIVTMLKTKVKIQSFESCLPVHFLSPEPGSIVIDATAAPGNKTTQCADKLNNTG 189

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIR 323
           K+ A++  K R + L+  +        +++  D  D  P     D ++VD  CS +G   
Sbjct: 190 KILAVEKDKNRFQILQTMIKDYGCTNVEVVNRDFLDIEPSSITPDYIIVDPTCSGSGI-- 247

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
               V + ++   I K   FQ  +L   + F      +V+S CS+  ++ EEV++++L  
Sbjct: 248 ---HVNYKKNEQRIEKLKNFQFIILNHALKFNAK--KIVYSVCSIHPEEGEEVIKEILEK 302

Query: 384 SPIP-VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
           +P   ++ + ++       D               D + +         GFF   L 
Sbjct: 303 NPQYTLQPIAISGKDQGCNDYDFC-----------DKVVRSKKELEKATGFFVCVLV 348


>gi|110835031|ref|YP_693890.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2]
 gi|119372273|sp|Q0VMI0|NUSB_ALCBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110648142|emb|CAL17618.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2]
          Length = 150

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +++ +      +  F  +   D+     +++  L  + 
Sbjct: 8   SARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKV---DREYFHDLLHGVLGQVK 64

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D  L   L   +       + +LR+   ++    DV    V++  +E AK       F
Sbjct: 65  TLDEQLTPYLDRRVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGAEDSF 124

Query: 121 A 121
            
Sbjct: 125 K 125


>gi|21356579|ref|NP_650787.1| CG42358 [Drosophila melanogaster]
 gi|7300487|gb|AAF55642.1| CG42358 [Drosophila melanogaster]
 gi|17862234|gb|AAL39594.1| LD16340p [Drosophila melanogaster]
 gi|220943050|gb|ACL84068.1| CG42358-PA [synthetic construct]
 gi|220953274|gb|ACL89180.1| CG42358-PA [synthetic construct]
          Length = 433

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 10/232 (4%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270
             P      + +Q+ +  +  +L    +  +VLD+CAAPG KT  +     +   + +++
Sbjct: 200 RHPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQNKGCIYSVE 259

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328
               R   L              I  DA +  P++  D   +LVD  CS +G   R    
Sbjct: 260 QDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEYILVDPSCSGSGMQNRMTVC 319

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
              ++   + K    Q K+L   +        + +  CSL K+++E+VVQ+ L+ +P   
Sbjct: 320 DEPKEDKRLQKLQGLQIKILSHAMGAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFK 379

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            L    +   K  ++     P     +           S   DG F     +
Sbjct: 380 LLSCKKALRNKWHNVGDKDYPNIGKNVL-----YCQPDSDLTDGIFLALFEK 426


>gi|327310359|ref|YP_004337256.1| PUA domain-containing protein [Thermoproteus uzoniensis 768-20]
 gi|326946838|gb|AEA11944.1| PUA domain containing protein [Thermoproteus uzoniensis 768-20]
          Length = 379

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 25/231 (10%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271
           +  L  FA G ++ Q   A    +L   L     +DL A+PGGKT  +      V A D 
Sbjct: 168 LRELEEFARGYFYDQSMPAMWAGRLAAALGARRAIDLNASPGGKTTHMAQLSIHVIAFDR 227

Query: 272 SKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHPD 327
           S+ ++E++  N  RL L +  D++  D+        F   D  LVD PCS  G     P 
Sbjct: 228 SRPKVERIIENARRLGLEHLVDVLVHDSRYVDRDFPFLRGDVALVDPPCSDLGV---RPK 284

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +  T    D+   A +QR+ +       +    V++S C+L   ++E  V          
Sbjct: 285 LSHTISMRDVETLARYQRQFIAAAARLAR---YVIYSTCTLTFTENEGNVLWA------- 334

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            E + L +                  R  P++ +          GFF   L
Sbjct: 335 SEELGLKTVSIYVPRAVEGWGCGNCRRFMPNVFDAP--------GFFLAVL 377


>gi|224082580|ref|XP_002306751.1| predicted protein [Populus trichocarpa]
 gi|222856200|gb|EEE93747.1| predicted protein [Populus trichocarpa]
          Length = 343

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              FD VL+DAPCS+ G   R    +     D + K A +QR++  Q +  V+PGG++V+
Sbjct: 200 PDSFDRVLLDAPCSALGL--RPRLFVGEVTIDSLKKHATYQRRMFDQAVKLVRPGGVIVY 257

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG----WIRITPDM 419
           S C+++  ++E +V+  L +    + L   N        +    SP G    W+R   + 
Sbjct: 258 STCTINPGENEALVRYALDTYK-FLSLASQNPRIGGPGLVGSFESPNGRTEEWLRPGEEE 316

Query: 420 LEKIDGVSSGMD--GFFAVAL 438
             +    SS +D  GFF    
Sbjct: 317 FVQRFDPSSSLDTIGFFIAKF 337


>gi|16803399|ref|NP_464884.1| transcription antitermination protein NusB [Listeria monocytogenes
           EGD-e]
 gi|46907585|ref|YP_013974.1| transcription antitermination protein NusB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093746|ref|ZP_00231496.1| N utilization substance protein B [Listeria monocytogenes str. 4b
           H7858]
 gi|47095942|ref|ZP_00233545.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224499938|ref|ZP_03668287.1| transcription antitermination protein NusB [Listeria monocytogenes
           Finland 1988]
 gi|224501698|ref|ZP_03670005.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-561]
 gi|226223960|ref|YP_002758067.1| transcription termination protein (NusB) [Listeria monocytogenes
           Clip81459]
 gi|254824582|ref|ZP_05229583.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-194]
 gi|254827620|ref|ZP_05232307.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL N3-165]
 gi|254852593|ref|ZP_05241941.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-503]
 gi|254898476|ref|ZP_05258400.1| transcription antitermination protein NusB [Listeria monocytogenes
           J0161]
 gi|254912033|ref|ZP_05262045.1| transcription antitermination protein NusB [Listeria monocytogenes
           J2818]
 gi|254932326|ref|ZP_05265685.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
 gi|254936360|ref|ZP_05268057.1| transcription antitermination protein NusB [Listeria monocytogenes
           F6900]
 gi|254994167|ref|ZP_05276357.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J2-064]
 gi|255018100|ref|ZP_05290226.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL F2-515]
 gi|255029814|ref|ZP_05301765.1| transcription antitermination protein NusB [Listeria monocytogenes
           LO28]
 gi|255520789|ref|ZP_05388026.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-175]
 gi|284801744|ref|YP_003413609.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5578]
 gi|284994886|ref|YP_003416654.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5923]
 gi|300765401|ref|ZP_07075383.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
 gi|22095949|sp|Q8Y7C6|NUSB_LISMO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|67460884|sp|Q71ZW3|NUSB_LISMF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514854|sp|C1L2R5|NUSB_LISMC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16410775|emb|CAC99437.1| lmo1359 [Listeria monocytogenes EGD-e]
 gi|46880853|gb|AAT04151.1| N utilization substance protein B [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47015688|gb|EAL06618.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47017867|gb|EAL08650.1| N utilization substance protein B [Listeria monocytogenes str. 4b
           H7858]
 gi|225876422|emb|CAS05131.1| Putative transcription termination protein (NusB) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258599998|gb|EEW13323.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL N3-165]
 gi|258605906|gb|EEW18514.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL R2-503]
 gi|258608951|gb|EEW21559.1| transcription antitermination protein NusB [Listeria monocytogenes
           F6900]
 gi|284057306|gb|ADB68247.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5578]
 gi|284060353|gb|ADB71292.1| transcription antitermination protein NusB [Listeria monocytogenes
           08-5923]
 gi|293583882|gb|EFF95914.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
 gi|293589999|gb|EFF98333.1| transcription antitermination protein NusB [Listeria monocytogenes
           J2818]
 gi|293593820|gb|EFG01581.1| transcription antitermination protein NusB [Listeria monocytogenes
           FSL J1-194]
 gi|300513838|gb|EFK40903.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
 gi|328467497|gb|EGF38566.1| transcription antitermination protein NusB [Listeria monocytogenes
           1816]
 gi|328475073|gb|EGF45861.1| transcription antitermination protein NusB [Listeria monocytogenes
           220]
 gi|332311800|gb|EGJ24895.1| N pathway substance protein [Listeria monocytogenes str. Scott A]
          Length = 128

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +SL   +     D     + +        +V   +   
Sbjct: 1   MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA+++  L +  + R       LLR+SV +I YL DV +   ++ ++E AK    + 
Sbjct: 52  AEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110

Query: 119 HFAKLVNSILRR 130
             +K +N +L  
Sbjct: 111 KSSKFINGVLAN 122


>gi|74002502|ref|XP_849037.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 3 [Canis
           familiaris]
          Length = 334

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 17/230 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL------DVSKR 274
             +++ +A++ +PV      +   VLDLCAAPGGK+  L+                  + 
Sbjct: 111 KKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSVALLQCADPGYLHCNEYDGLRFRW 170

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331
             + L   + +  +    + E+D  D    +   FD VLVDAPCS+  +           
Sbjct: 171 LKQTLESFIPQPLVDVIKVSELDGRDLGDAQPGTFDKVLVDAPCSNDRSWLFSSDSQKAA 230

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                       Q +LL   I  ++PGG++V+S C+L K ++++V+ ++L S    + + 
Sbjct: 231 CRISQRRNLPVLQIELLRSAIKALRPGGLLVYSTCTLSKAENQDVISEILNSYSNIIPVD 290

Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A   S D   A + +   + + PD  +            +   L++
Sbjct: 291 IKEMARTCSRDFTFAPTGQECGLLVIPDKGKAWGP-------MYIAKLKK 333


>gi|229543899|ref|ZP_04432958.1| NusB antitermination factor [Bacillus coagulans 36D1]
 gi|229325038|gb|EEN90714.1| NusB antitermination factor [Bacillus coagulans 36D1]
          Length = 132

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  +   L  +     S    +                   +  +VN T   L
Sbjct: 1   MMKRRTAREKALQALFQMDMNEASPEDAIRNALDGQESDD-------YLEKLVNGTATHL 53

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             IDA++   L + +L R       +LR++  +++Y  DV     ++ A+E AKR   + 
Sbjct: 54  AEIDAMISQHLENWTLDRLAKVELNILRLAAYELMYAEDVPANVAINEALEIAKRF-ADE 112

Query: 119 HFAKLVNSILRRVSR 133
             AK +N +L ++  
Sbjct: 113 KSAKFINGVLNQMKD 127


>gi|322820427|gb|EFZ27046.1| hypothetical protein TCSYLVIO_6750 [Trypanosoma cruzi]
          Length = 662

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 91/288 (31%), Gaps = 69/288 (23%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK----------------------TAQLI 260
              Q+  + +P  L         LD+CA+PG K                           
Sbjct: 105 ISRQEEVSMLPPFLLDIQPTDKCLDMCASPGSKTAQILVALGRHKVVPVDSDASPFTFDY 164

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL---------------YAEDIIEMDAFDYCPKK 305
            S   V A ++  +R   L   + RL L                          +     
Sbjct: 165 ESEGLVMANEIDTKRANMLVHQVKRLRLLFPFALFTNHDARYFPNVKCAASLVGNADEDL 224

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD +L D  CS  GTIR+ P +       + +     Q ++ L+     + GG VV+S 
Sbjct: 225 RFDKILCDVVCSGDGTIRKAPHIFKIWSPREAINLQKTQIQIALRACHLSRVGGRVVYST 284

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS---------------IDMAMALSPE 410
           CS++  ++E VV +++  +   ++LV   S                     ++ +A S E
Sbjct: 285 CSMNPIENEAVVAQIVHRTRGAMKLVDARSLLPGLQCAPGLQRWVVTNFKGELVVAPSDE 344

Query: 411 GWIRITPD-----------------MLEKIDGVSSGMDGFFAVALRRL 441
               + P                  +  ++     G   FF   L ++
Sbjct: 345 AHEALFPPNTPGAYASAAVNELDLRLCMRLYPSHCGGGAFFIAVLDKV 392


>gi|75675914|ref|YP_318335.1| transcription antitermination protein NusB [Nitrobacter
           winogradskyi Nb-255]
 gi|119390791|sp|Q3SRV8|NUSB_NITWN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|74420784|gb|ABA04983.1| NusB antitermination factor [Nitrobacter winogradskyi Nb-255]
          Length = 161

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  +            +        +    R +V   +R  
Sbjct: 17  AARLAAVQALYQMEIGGAGINDVFAEFDSHWLGNEVEGDRYLPAEAAFFRDVVAGVVRDQ 76

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            RID ++D  L     L R    L+ +LR    ++ +  DV    VV   V+ A      
Sbjct: 77  VRIDPLIDDALSKSWPLKRVAAILRAVLRAGSYELEHRKDVPARVVVSEYVDVAHAFV-E 135

Query: 118 RHFAKLVNSILRRVSREK 135
           +  A +VN++L +++R  
Sbjct: 136 KDEAGMVNAVLDQIARRF 153


>gi|168024016|ref|XP_001764533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684397|gb|EDQ70800.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 399

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 21/144 (14%)

Query: 307 FDAVLVDAPCSSTGTIRR---------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           +D VLVDA C+  G++R                  + + I      Q +LL  G   + P
Sbjct: 257 YDKVLVDAECTHDGSLRHIVKYNEWGWDTFERRFLNEERIASITSLQLRLLSNGFRLLNP 316

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S CS  +  +E VV++ L S           +  W                  P
Sbjct: 317 GGTLVYSTCSFTRDQNEGVVERFLASHDDAELQEVEPARQWPCRPGG-----------LP 365

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
             L + D V+S   G F   L +L
Sbjct: 366 HTL-RFDPVTSHTSGLFIAKLTKL 388


>gi|320536010|ref|ZP_08036071.1| NOL1/NOP2/sun family protein [Treponema phagedenis F0421]
 gi|320147135|gb|EFW38690.1| NOL1/NOP2/sun family protein [Treponema phagedenis F0421]
          Length = 267

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 98/268 (36%), Gaps = 26/268 (9%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E +   L           L E  + I    G  +   +  D ++    +      +   L
Sbjct: 12  EAYYRDLFGARWEPLRKALLEESKQIAFSDGLRKP--YYLDFASVQAARALPYSASGHCL 69

Query: 247 DLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY------AEDIIEM 296
           D+CAAPGGKT      ++   A + A ++S  R  +L+  +                 + 
Sbjct: 70  DMCAAPGGKTLVLLRDVLGKDALLHANELSLARRRRLQEVIKTHLPPEENARVQISGFDA 129

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  +  ++ +L+DAPCSS   + R    L       +   +  Q  L+      +K
Sbjct: 130 ARMPRFKRNAYERILLDAPCSSERHLLRDQKYLTQWTESRVKSLSRRQWALISAAFLLLK 189

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           P G +V+S C+L  Q+++ ++ K+++     V +  ++               +  I+  
Sbjct: 190 PDGFLVYSTCALAPQENDMIIDKLIKKYGSEVIVEKISQDKLCEPT-------QFGIQYL 242

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLIQP 444
           PD  E    +       +   +++  +P
Sbjct: 243 PDTAEGAGPI-------YIARIKKSAKP 263


>gi|289434640|ref|YP_003464512.1| transcription antitermination factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|315303024|ref|ZP_07873735.1| transcription antitermination factor NusB [Listeria ivanovii FSL
           F6-596]
 gi|289170884|emb|CBH27426.1| transcription antitermination factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313628606|gb|EFR97028.1| transcription antitermination factor NusB [Listeria ivanovii FSL
           F6-596]
 gi|313633359|gb|EFS00202.1| transcription antitermination factor NusB [Listeria seeligeri FSL
           N1-067]
 gi|313638045|gb|EFS03323.1| transcription antitermination factor NusB [Listeria seeligeri FSL
           S4-171]
          Length = 128

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +SL   +     D     + +        +V   +   
Sbjct: 1   MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA+++  L +  + R       LLR+SV +I YL DV +   ++ ++E AK    + 
Sbjct: 52  AEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEINYLSDVPNRVSLNESIEIAK-IYSDE 110

Query: 119 HFAKLVNSILRR 130
             +K +N +L  
Sbjct: 111 KSSKFINGVLAN 122


>gi|325971009|ref|YP_004247200.1| Fmu (Sun) domain protein [Spirochaeta sp. Buddy]
 gi|324026247|gb|ADY13006.1| Fmu (Sun) domain protein [Spirochaeta sp. Buddy]
          Length = 262

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 11/233 (4%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E++  +L      +    L    + I    G  +   +  D ++ I  +L G  +  SVL
Sbjct: 15  ESYYAQLYQGRWESLKQALLLERKPIAFEEGLTQP--YYLDEASVIAAKLLGVQDGDSVL 72

Query: 247 DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLH----LYAEDIIEMDAF 299
           D+CAAPGGK+  +     +   + A D S  R  +L+  L             +   DA 
Sbjct: 73  DMCAAPGGKSLVMAAALKTQGSLVANDRSATRRGRLKQVLKEHLPEELFTRIMVTGHDAT 132

Query: 300 DYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            +    +  +D +L+DAPCSS   +   P  L           A  Q  +L   +  VK 
Sbjct: 133 RWSLYEQNKYDRILLDAPCSSERHVLSDPKALAIWSPSRPKHLAIQQFAMLASALEAVKV 192

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
           GG +++S CS++  ++E V+ K+         L  L+    +S      +  +
Sbjct: 193 GGYILYSTCSINPMENEMVIDKLFDKREGRFTLEKLDPPSSESCRHGSIILSD 245


>gi|332307436|ref|YP_004435287.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174765|gb|AEE24019.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 140

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +      +  L  +   E        +   D      ++   +R
Sbjct: 1   MKPAARRKARELAVQAVYSWQMSKNPLDQV---ELSIVTSNNMQDVDTEYFLELLRAVVR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
               +DA +   L             +LR++  +++  +DV    V++ A+E AK     
Sbjct: 58  KTAELDAKIKPYLGRLPEELDPVENAILRLATYELVERIDVPYKVVINEAIELAKSF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K +N +L +
Sbjct: 117 EESHKFINGVLDK 129


>gi|152991103|ref|YP_001356825.1| transcription antitermination protein NusB [Nitratiruptor sp.
           SB155-2]
 gi|166215704|sp|A6Q4Q9|NUSB_NITSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151422964|dbj|BAF70468.1| transcription antitermination factor NusB [Nitratiruptor sp.
           SB155-2]
          Length = 139

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRK----RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M +   AR     LL          +     +L+ +   +         +    A+   T
Sbjct: 1   MATRHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQ-------REFALALFKGT 53

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
           +  L  ID ++   L    + R  +  + +LR+ V ++ Y D+    V++ AVE AK+  
Sbjct: 54  VEHLDTIDEMIKKHLESWDMERVGHIERAILRLGVYELFYTDLDPAIVINEAVELAKK-L 112

Query: 116 ENRHFAKLVNSILR 129
                 K +N +L 
Sbjct: 113 GTDQSPKFINGVLD 126


>gi|315282224|ref|ZP_07870678.1| transcription antitermination factor NusB [Listeria marthii FSL
           S4-120]
 gi|313614126|gb|EFR87816.1| transcription antitermination factor NusB [Listeria marthii FSL
           S4-120]
          Length = 128

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +SL   +     D     + +        +V   +   
Sbjct: 1   MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA+++  L +  + R       LLRVSV +I YL DV +   ++ ++E AK    + 
Sbjct: 52  AEIDAIIEPNLDNWRMDRLSKVDLSLLRVSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110

Query: 119 HFAKLVNSILRR 130
             +K +N +L  
Sbjct: 111 KSSKFINGVLAN 122


>gi|107022034|ref|YP_620361.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia AU 1054]
 gi|116688978|ref|YP_834601.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia HI2424]
 gi|170732269|ref|YP_001764216.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia MC0-3]
 gi|206561400|ref|YP_002232165.1| transcription antitermination protein NusB [Burkholderia
           cenocepacia J2315]
 gi|254246083|ref|ZP_04939404.1| Transcription termination factor [Burkholderia cenocepacia PC184]
 gi|119372281|sp|Q1BYB7|NUSB_BURCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215666|sp|A0K5D1|NUSB_BURCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688594|sp|B1JX75|NUSB_BURCC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238693104|sp|B4EBT9|NUSB_BURCJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|105892223|gb|ABF75388.1| NusB antitermination factor [Burkholderia cenocepacia AU 1054]
 gi|116647067|gb|ABK07708.1| NusB antitermination factor [Burkholderia cenocepacia HI2424]
 gi|124870859|gb|EAY62575.1| Transcription termination factor [Burkholderia cenocepacia PC184]
 gi|169815511|gb|ACA90094.1| NusB antitermination factor [Burkholderia cenocepacia MC0-3]
 gi|198037442|emb|CAR53377.1| probable N utilization substance protein B [Burkholderia
           cenocepacia J2315]
          Length = 145

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +        +     G   +    + D+ L+ AI++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNAPSGEIDAQLRGALGY---DKADKELLEAILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   L   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHATLVEALAPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|223994053|ref|XP_002286710.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220978025|gb|EED96351.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 517

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 19/184 (10%)

Query: 244 SVLDLCAAPGGKTAQ------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
            VLDLCA+PG KT Q            +V A DV   RL+ LR  L R  L  E    + 
Sbjct: 273 KVLDLCASPGSKTMQALEIVASSAKKGRVIANDVHSGRLDSLREALGRSGLEDEMTARVT 332

Query: 298 AFDYC--------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +Y           KLFDA++ D PCS  GTIR+   +L         +    Q K+L+
Sbjct: 333 YTNYDASVFPLPKSGKLFDAIICDVPCSGDGTIRKDKHILPMWTPHTGNELHSLQAKILV 392

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPLNSAYWKSIDMA 404
           + +  VK G +V +S CSL+  + E VV   L     + +    +L+             
Sbjct: 393 RALELVKVGVVVCYSTCSLNPVEDEAVVASALTTLKTKQTSAEFQLMEWPEGLLPGFVRR 452

Query: 405 MALS 408
             ++
Sbjct: 453 PGIT 456


>gi|167520882|ref|XP_001744780.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777111|gb|EDQ90729.1| predicted protein [Monosiga brevicollis MX1]
          Length = 305

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 14/180 (7%)

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRL 276
           E    +Q+  + +  +       + VLD+CAAPGGKT+ +         V AL+ S +R 
Sbjct: 91  EPNAILQNLPSCVAARALAPEPGMRVLDMCAAPGGKTSHISLLLRGTGTVVALERSPKRA 150

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----------FDAVLVDAPCSSTGTIRRHP 326
            +L+  +  L  +  ++ +MDA                  FDAVL+DAPCS  G   R  
Sbjct: 151 AQLKEWVASLGCHNVEVHQMDATKCLEGSKGKNSKFPLASFDAVLLDAPCSGLGQRPRVR 210

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
                R   ++   A +QRKLL   ++ ++PGG +VFS CSL   ++E  V   L++ P 
Sbjct: 211 VDCPLR-VAELEDYASYQRKLLQVAVAALRPGGRLVFSTCSLFAGENEANVAWALKAMPE 269


>gi|239618307|ref|YP_002941629.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1]
 gi|239507138|gb|ACR80625.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1]
          Length = 336

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 21/230 (9%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
            R  +   L+   +        +     + A   LS   +     +V  TLR   +ID +
Sbjct: 4   PRQKALETLAFFDQNGY-----IPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYI 58

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L+  L     +    +   LR+ V Q+ Y+D V ++A +  +VE  K     + F KLVN
Sbjct: 59  LNQFLKKP-EKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKA----KSFKKLVN 113

Query: 126 SILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184
           ++LR++S+ +  L ++        P+W  +  E     E +  + +         L V  
Sbjct: 114 AVLRKISKLETPLPEQPIWLKYSHPKWLVDYWEE---IEWINPLEELLSYNQQPPLQVYS 170

Query: 185 DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDA 228
             +   H L+              I + E  E I SL    E  + V + 
Sbjct: 171 IPKGEYHLLDEKGYIYDKSDFSDCIIVLEKGEPISSLKRIDELEYIVNEY 220


>gi|322379027|ref|ZP_08053430.1| transcription antitermination protein NusB [Helicobacter suis HS1]
 gi|322380793|ref|ZP_08054899.1| transcription antitermination protein NusB [Helicobacter suis HS5]
 gi|321146797|gb|EFX41591.1| transcription antitermination protein NusB [Helicobacter suis HS5]
 gi|321148519|gb|EFX43016.1| transcription antitermination protein NusB [Helicobacter suis HS1]
          Length = 133

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL            +L+        R +    Q     ++  TL  L
Sbjct: 1   MATRSQVREAVVGLLYAYESGN---EAVLEKASDFLNQRKIKNAQQQFALELLKGTLDRL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D +L  +L    + R     + +LR+   ++LY       V++ A+E AK+      
Sbjct: 58  ENLDQILQPLLKDWPIKRIGSMERAILRLGAYEVLYTTTKPPIVINEAIELAKQY-GEDQ 116

Query: 120 FAKLVNSILR 129
             KL+N+IL 
Sbjct: 117 APKLINAILD 126


>gi|296133218|ref|YP_003640465.1| NusB antitermination factor [Thermincola sp. JR]
 gi|296031796|gb|ADG82564.1| NusB antitermination factor [Thermincola potens JR]
          Length = 142

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 6/138 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +  +L  +    +      +  + +     + +  Q   R +V  TLR    
Sbjct: 2   SRRKAREAALQVLFQIEMAGVEEEKAYEYIFSE---FNIGENAQKFCRELVQGTLRNRAY 58

Query: 63  IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID ++  V     L R     + ++R+++ ++L+  DV     ++ A+E  K D      
Sbjct: 59  IDDIIREVSNEWDLYRMANVDRNIIRMALYEMLFREDVPKNVAINEAIELGK-DFSTADS 117

Query: 121 AKLVNSILRRVSREKIEL 138
            K +N IL  V++   + 
Sbjct: 118 GKFINGILGYVAKNMEQF 135


>gi|224373796|ref|YP_002608168.1| transcription antitermination factor NusB [Nautilia profundicola
           AmH]
 gi|223589865|gb|ACM93601.1| transcription antitermination factor NusB [Nautilia profundicola
           AmH]
          Length = 136

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  +AR      L              D    D   +          + ++      +
Sbjct: 1   MATITHAREAVIQTLYAQEMGNDQAIEQFDEILKDKKVKGSKAE---FAKKLLKGVSEHI 57

Query: 61  PRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +ID ++ + ++     R     +Q+LRV + +ILY D     V+D AV+ AK   E++ 
Sbjct: 58  DKIDEIIKNHLIDWDFERLDKVDKQILRVGIYEILYTDTPYQIVIDEAVKIAKNFSEDK- 116

Query: 120 FAKLVNSILRRVSREKIEL 138
               +N IL RV++EK+  
Sbjct: 117 AKSFINGILDRVAKEKMSN 135


>gi|281344811|gb|EFB20395.1| hypothetical protein PANDA_012666 [Ailuropoda melanoleuca]
          Length = 156

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 14/115 (12%)

Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
               +   A FQ++ L   ++F  ++    +V+S CSL ++++E+VVQ  L+ +P    L
Sbjct: 15  SQARLQALAGFQQRALRHALTFPSLQ---RLVYSTCSLCQEENEDVVQDALQQNPGTFRL 71

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
            P+  + W    +      E  +R +P+             GFF   L R+  P+
Sbjct: 72  APVLPS-WPHRGLGTFPGAEHCLRASPETTL--------TGGFFVAVLERVEVPR 117


>gi|330899661|gb|EGH31080.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330943563|gb|EGH45900.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330976725|gb|EGH76766.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 165

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        SL  +      D+ F  +   D      +++       
Sbjct: 25  AKRREARQMATQALYQWHMAGHSLNEIEAQFRVDNDFSNV---DGTYFHELLHGVATNKT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 141 HKFVNGVLDK 150


>gi|297195528|ref|ZP_06912926.1| transcription antitermination protein NusB [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152834|gb|EFH32015.1| transcription antitermination protein NusB [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 142

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  ++  +L      +               +V       
Sbjct: 1   MAARNKARKRAFQILFEADQRGATVHTVLADWVRHARTDERQPPVAEYTMDLVEGYAEHA 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +  ++ R     + +LR+   ++++ D   D  V+D AV+ AK    + 
Sbjct: 61  DRIDELIATYAVGWTIDRMPVVDRNILRLGAYELVWKDETPDAVVIDEAVQLAKEFSTDE 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|114704829|ref|ZP_01437737.1| transcription antitermination protein NusB [Fulvimarina pelagi
           HTCC2506]
 gi|114539614|gb|EAU42734.1| transcription antitermination protein NusB [Fulvimarina pelagi
           HTCC2506]
          Length = 163

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFLP 61
           ARL +   L  +      L   +           +        D    R IV+  +R   
Sbjct: 18  ARLAAVQALYQMDIGGTPLVETVAEYETHRMGHEIDGETYRVADAAWFRDIVSGVVRRQK 77

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENR 118
            ID ++   L     L R   +L+ +LR  V +I    DV    +V   V+ AK   E  
Sbjct: 78  AIDPIIHANLPPGWPLSRLDSTLRAILRAGVYEIETRNDVPVAVIVSEYVDVAKAFFEEE 137

Query: 119 HFAKLVNSILRRVSREK 135
              KLVN++L RV+RE 
Sbjct: 138 E-PKLVNALLDRVAREM 153


>gi|298491267|ref|YP_003721444.1| Fmu (Sun) domain-containing protein ['Nostoc azollae' 0708]
 gi|298233185|gb|ADI64321.1| Fmu (Sun) domain protein ['Nostoc azollae' 0708]
          Length = 321

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 11/230 (4%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPG 253
                  +    + E     P   +G ++  D S+     +          + D+CAAPG
Sbjct: 57  TPWQPKFVDRLHIGEKPGKHPLHQQGHFYCLDFSSVFAASILLTINQPVPLLFDMCAAPG 116

Query: 254 GKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309
           GK+           + + +V  +RL  L  NL R  +    ++  D+  +     +  + 
Sbjct: 117 GKSIFAWKALKPDLLISNEVIAKRLGMLISNLKRCQIQPTGVVNRDSSIFAQMLLQTSNL 176

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           V+VDAPC+    + +            I KSA  Q++++      V P G + +  C+  
Sbjct: 177 VVVDAPCTGQSLLAKGEKAPGCFHHTSINKSANRQKRIIANSTQLVAPQGYLAYMTCTYS 236

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +++E+V + +L   P    +          +     L+     R+ P  
Sbjct: 237 PEENEQVCEWLLEKFPQFQAVE-----VSHLLSYQSHLTTIPCYRMFPQD 281


>gi|302533374|ref|ZP_07285716.1| transcription antitermination factor NusB [Streptomyces sp. C]
 gi|302442269|gb|EFL14085.1| transcription antitermination factor NusB [Streptomyces sp. C]
          Length = 143

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  NAR  +  +L    ++ + +  +L      S               +V      +
Sbjct: 1   MAARSNARKRAFQILFEADQRGVPVREVLADWIRHSRSDDRQPPVNAFTMDLVEGYADKV 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +   L R     + +LR+   +++++D   D   +D AV+ AK    + 
Sbjct: 61  KRIDDLIVTYAVDWELDRMPVVDRNILRLGAYELIWVDETPDAVAIDEAVQLAKEFSTDD 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|119945180|ref|YP_942860.1| NusB antitermination factor [Psychromonas ingrahamii 37]
 gi|229620369|sp|A1SUU6|NUSB_PSYIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119863784|gb|ABM03261.1| NusB antitermination factor [Psychromonas ingrahamii 37]
          Length = 145

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   +      ++S   +++    D   + LS+ D    + ++   + 
Sbjct: 3   MKPAERRRARQSAVQAIYQWQITKLSAGQIIEQFSTD---QDLSKTDVPYFKELLTGVIH 59

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
            +  +D  L   L   +       + +LR+++ ++    D+    V++ A+E AK    +
Sbjct: 60  RVDFLDEKLSPYLSRKIEDVDMVDKAVLRLAMFELTQRTDIPHKVVLNEAIELAKDFATD 119

Query: 118 RHFA 121
             + 
Sbjct: 120 ESYK 123


>gi|320322797|gb|EFW78890.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 165

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNV---DGAYFRELLHGVATNKT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALSPCLDLTIEELDLVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141

Query: 121 A 121
            
Sbjct: 142 K 142


>gi|146096798|ref|XP_001467934.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072300|emb|CAM71006.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 414

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 99/257 (38%), Gaps = 28/257 (10%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR 274
           +  F    +++ D +++  V+        +VLD+CAAPGGK+  +    +   AL  ++ 
Sbjct: 144 IDAFGIKAYYLLDYASAHVVEQLQVGAFDTVLDMCAAPGGKSVAVAQFLSPDGALTCNEA 203

Query: 275 RLEKLRCNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRR 324
           R ++       L  +           + DA  +     F  VLVDAPCSS          
Sbjct: 204 RADRCARLRRNLQEHVPVNYVPWRTTQRDAQTWYDPGAFSRVLVDAPCSSERHLLQQSGG 263

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P  L     +   + A  QR LL + I   + GG +V+S CS+   +++ VV +VL+ +
Sbjct: 264 SPLSLREWSEETTAQLAALQRMLLQRAIETCRVGGRIVYSTCSISPLENDGVVGEVLQRT 323

Query: 385 PIPVELVPLNS-------AYWKSIDMAMALSPEGWIRITPD----------MLEKIDGVS 427
              V+++  +S       A  K+   A      G     P               +   +
Sbjct: 324 RCEVKVIKTSSAAAAALVAPPKTATDASESDASGAEACAPHTPTVLGEATAYGRLLLPDT 383

Query: 428 SGMDG-FFAVALRRLIQ 443
               G  F   L +  +
Sbjct: 384 CHGWGPMFFCVLEKTAE 400


>gi|269836410|ref|YP_003318638.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745]
 gi|269785673|gb|ACZ37816.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745]
          Length = 140

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR ++  +L      +   + +L     D     L Q  +  V  +++  +  L +I
Sbjct: 7   RHQARTLALQILYEADVAQHPASDVLARYTSD---LSLPQPVRRYVERLISGVMEDLEKI 63

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           DA +     +  + +     + +LR+++ ++    DV   A ++ AVE AKR   +   
Sbjct: 64  DAEIGAAAPAFPVDQLPPIDRNILRIAIYELRNEHDVPVKAAINEAVELAKRFGGDNSS 122


>gi|156843043|ref|XP_001644591.1| hypothetical protein Kpol_1003p38 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115237|gb|EDO16733.1| hypothetical protein Kpol_1003p38 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 496

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 102/354 (28%), Gaps = 75/354 (21%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209
            W +         + +  I +         +    DI                +      
Sbjct: 154 RWIRINPIRAQYDKGLEPIMNELNKKFPTRVNHWSDI---VPGTIYHDDYIPNLFGVHTK 210

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---------LI 260
           + I S   +  G   +QD ++  P  +     N  V+D CAAPG KT             
Sbjct: 211 DKITSHELYKTGKVIIQDRASCFPAHILNPGKNDIVIDACAAPGNKTTHTASYILGGPKK 270

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFD---AVLVDAPC 316
               ++ A +    R + L+  +          +   D       + F      +VD  C
Sbjct: 271 DQTTQIYAFEKDPERAKILQHMIKVAGCSNTIQVNVGDFTKIATPEKFRNVTGFIVDPSC 330

Query: 317 SSTGTIRRHPDVLWTRDTDDIV--------------------------------KSACFQ 344
           S +G   R       +   +                                  K A FQ
Sbjct: 331 SGSGIFGRKYVDSINKKKQESSGDNGNQDDEDAVPDEQEEEFDLKRDDLKTRLSKLASFQ 390

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV---------ELVPLNS 395
            +++   +SF K    +V+S CS+  +++E VV  +L    +           E++P   
Sbjct: 391 FQVVKHAMSFPKAK-KIVYSTCSIHAEENEGVVIDLLLDKKVQEWGWKVAPRSEVIPTWP 449

Query: 396 AYWKSIDMAMALSPE---------GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 + +     E         G IR+ P           G  GFFAV   R
Sbjct: 450 RRGFQAEFSKVFRDEDEKCQELADGCIRVLP--------KEDGGIGFFAVCFER 495


>gi|229585491|ref|YP_002843993.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27]
 gi|228020541|gb|ACP55948.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27]
          Length = 368

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 125/352 (35%), Gaps = 35/352 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
                 +L  E +KR   + +         +     + +     +     P W +E+L  
Sbjct: 35  PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90

Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
                 +        +             +  ++E+   +          I++K+ P  +
Sbjct: 91  LLDINALKRKLSERWMWARVNILKTDIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269
            SL    +    + D ++S+ V+         ++DL +APG K +  ++   + A+    
Sbjct: 151 SSLSIVKDCKLLIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210

Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           DV  +RL +    L R  +      II  D+         D +L+DAPCSS+G I   P 
Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269

Query: 328 VLWTRDTD-DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +L     +  I K A  Q+ LL + +        +V++ CSL  ++ E V++        
Sbjct: 270 ILLKLSDNGKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +  +P ++         +        R  P +           +GFF   L
Sbjct: 323 DIAEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363


>gi|229579902|ref|YP_002838301.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581438|ref|YP_002839837.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228010617|gb|ACP46379.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012154|gb|ACP47915.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 368

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 35/352 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
                 +L  E +KR   + +         +     + +     +     P W +E+L  
Sbjct: 35  PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90

Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
                 +        +             +  ++E+   +          I++K+ P  +
Sbjct: 91  LLDINALKRKLSERWMWARVNILKTGIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269
            SL    +    + D ++S+ V+         ++DL +APG K +  ++   + A+    
Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210

Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           DV  +RL +    L R  +      II  D+         D +L+DAPCSS+G I   P 
Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269

Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +L     ++ I K A  Q+ LL + +        +V++ CSL  ++ E V++        
Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +  +P ++         +        R  P +           +GFF   L
Sbjct: 323 DIAEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363


>gi|70946870|ref|XP_743106.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56522443|emb|CAH76900.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 767

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 58/245 (23%)

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------- 302
            K          V A D + +R   L   L  +H     +   +A  +            
Sbjct: 2   KKLISNNNPTGVVVANDANFKRCCMLFHRLKNIHSNCLIVTNNNAVSFPYLYLKNKIDNS 61

Query: 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             K  FD+VL D PCS  GT+R+  ++    +  +       Q  +L + I  VK GG V
Sbjct: 62  FEKIYFDSVLCDVPCSGDGTLRKDRNIWINWNPVNAYNLFQLQVNILKRSIELVKEGGYV 121

Query: 362 VFSNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWKSIDMAMALSP------EGWI 413
           ++S CSL+  ++E V+ +V    S+   ++L+   +   K ++    L+       + W 
Sbjct: 122 IYSTCSLNPIENEAVICEVFNMLSNSESLKLINFENELVKKLNYREGLTEWKLLIDDKWF 181

Query: 414 RIT-----------PDML---------------------------EKIDGVSSGMDGFFA 435
                         P+                             ++         GFF 
Sbjct: 182 NTYDEFIDYLKDIQPEKFKKVYEKIKNGMFTPNKEFMDKINLKYVKRFFPHHYNAGGFFI 241

Query: 436 VALRR 440
             + +
Sbjct: 242 ALIEK 246


>gi|227828262|ref|YP_002830042.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25]
 gi|227460058|gb|ACP38744.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25]
          Length = 368

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 35/352 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
                 +L  E +KR   + +         +     + +     +     P W +E+L  
Sbjct: 35  PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90

Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
                 +        +             +  ++E+   +          I++K+ P  +
Sbjct: 91  LLDINALKRKLSERWMWARVNILKTDIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269
            SL    +    + D ++S+ V+         ++DL +APG K +  ++   + A+    
Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210

Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           DV  +RL +    L R  +      II  D+         D +L+DAPCSS+G I   P 
Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269

Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +L     ++ I K A  Q+ LL + +        +V++ CSL  ++ E V++        
Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +  +P ++         +        R  P +           +GFF   L
Sbjct: 323 DIAEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363


>gi|167837551|ref|ZP_02464434.1| transcription antitermination protein NusB [Burkholderia
           thailandensis MSMB43]
          Length = 145

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    +   +     G   +    + D+ L+  I++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKTLLDTILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   +   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|116872790|ref|YP_849571.1| transcription antitermination protein NusB [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123466249|sp|A0AIG0|NUSB_LISW6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116741668|emb|CAK20792.1| N utilization substance protein B/transcription termination factor
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 128

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +SL   +     D     + +        +V   +   
Sbjct: 1   MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA+++  L +  + R       LLR+SV +I YL DV +   ++ ++E AK    + 
Sbjct: 52  AEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIAK-IYSDE 110

Query: 119 HFAKLVNSILRR 130
             +K +N +L  
Sbjct: 111 KSSKFINGVLAN 122


>gi|53720238|ref|YP_109224.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei K96243]
 gi|53725935|ref|YP_103717.1| transcription antitermination protein NusB [Burkholderia mallei
           ATCC 23344]
 gi|67643981|ref|ZP_00442724.1| transcription antitermination factor NusB [Burkholderia mallei GB8
           horse 4]
 gi|83718415|ref|YP_442074.1| transcription antitermination protein NusB [Burkholderia
           thailandensis E264]
 gi|121599031|ref|YP_992107.1| transcription antitermination protein NusB [Burkholderia mallei
           SAVP1]
 gi|124385249|ref|YP_001028552.1| transcription antitermination protein NusB [Burkholderia mallei
           NCTC 10229]
 gi|126438627|ref|YP_001060031.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 668]
 gi|126448499|ref|YP_001081550.1| transcription antitermination protein NusB [Burkholderia mallei
           NCTC 10247]
 gi|126452933|ref|YP_001067310.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 1106a]
 gi|134280178|ref|ZP_01766889.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 305]
 gi|166998350|ref|ZP_02264210.1| transcription antitermination factor NusB [Burkholderia mallei
           PRL-20]
 gi|167580929|ref|ZP_02373803.1| transcription antitermination protein NusB [Burkholderia
           thailandensis TXDOH]
 gi|167619020|ref|ZP_02387651.1| transcription antitermination protein NusB [Burkholderia
           thailandensis Bt4]
 gi|167739782|ref|ZP_02412556.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 14]
 gi|167817004|ref|ZP_02448684.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 91]
 gi|167825416|ref|ZP_02456887.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 9]
 gi|167846905|ref|ZP_02472413.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei B7210]
 gi|167895484|ref|ZP_02482886.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 7894]
 gi|167903866|ref|ZP_02491071.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912133|ref|ZP_02499224.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei 112]
 gi|167920107|ref|ZP_02507198.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei BCC215]
 gi|217420428|ref|ZP_03451933.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 576]
 gi|226193837|ref|ZP_03789439.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813433|ref|YP_002897884.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei MSHR346]
 gi|242315882|ref|ZP_04814898.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106b]
 gi|254175420|ref|ZP_04882080.1| transcription antitermination factor NusB [Burkholderia mallei ATCC
           10399]
 gi|254191824|ref|ZP_04898327.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254196083|ref|ZP_04902508.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei S13]
 gi|254202417|ref|ZP_04908780.1| transcription antitermination factor NusB [Burkholderia mallei FMH]
 gi|254207748|ref|ZP_04914098.1| transcription antitermination factor NusB [Burkholderia mallei JHU]
 gi|254261365|ref|ZP_04952419.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1710a]
 gi|254298898|ref|ZP_04966348.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 406e]
 gi|254356350|ref|ZP_04972626.1| transcription antitermination factor NusB [Burkholderia mallei
           2002721280]
 gi|257138259|ref|ZP_05586521.1| transcription antitermination protein NusB [Burkholderia
           thailandensis E264]
 gi|81604460|sp|Q62HV3|NUSB_BURMA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81607761|sp|Q63RP4|NUSB_BURPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119372283|sp|Q2SYC5|NUSB_BURTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215667|sp|A3MMR4|NUSB_BURM7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215668|sp|A2S9D3|NUSB_BURM9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215669|sp|A1V1K4|NUSB_BURMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215670|sp|A3NY89|NUSB_BURP0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215671|sp|A3NCG0|NUSB_BURP6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52210652|emb|CAH36636.1| probable N utilization substance protein B [Burkholderia
           pseudomallei K96243]
 gi|52429358|gb|AAU49951.1| N utilization substance protein B [Burkholderia mallei ATCC 23344]
 gi|83652240|gb|ABC36303.1| transcription antitermination factor NusB [Burkholderia
           thailandensis E264]
 gi|121227841|gb|ABM50359.1| transcription antitermination factor NusB [Burkholderia mallei
           SAVP1]
 gi|124293269|gb|ABN02538.1| N utilization substance protein B [Burkholderia mallei NCTC 10229]
 gi|126218120|gb|ABN81626.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 668]
 gi|126226575|gb|ABN90115.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106a]
 gi|126241369|gb|ABO04462.1| transcription antitermination factor NusB [Burkholderia mallei NCTC
           10247]
 gi|134248185|gb|EBA48268.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 305]
 gi|147746664|gb|EDK53741.1| transcription antitermination factor NusB [Burkholderia mallei FMH]
 gi|147751642|gb|EDK58709.1| transcription antitermination factor NusB [Burkholderia mallei JHU]
 gi|148025347|gb|EDK83501.1| transcription antitermination factor NusB [Burkholderia mallei
           2002721280]
 gi|157809075|gb|EDO86245.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 406e]
 gi|157939495|gb|EDO95165.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160696464|gb|EDP86434.1| transcription antitermination factor NusB [Burkholderia mallei ATCC
           10399]
 gi|169652827|gb|EDS85520.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei S13]
 gi|217395840|gb|EEC35857.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 576]
 gi|225934142|gb|EEH30127.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505806|gb|ACQ98124.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei MSHR346]
 gi|238525458|gb|EEP88886.1| transcription antitermination factor NusB [Burkholderia mallei GB8
           horse 4]
 gi|242139121|gb|EES25523.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1106b]
 gi|243065419|gb|EES47605.1| transcription antitermination factor NusB [Burkholderia mallei
           PRL-20]
 gi|254220054|gb|EET09438.1| transcription antitermination factor NusB [Burkholderia
           pseudomallei 1710a]
          Length = 145

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    +   +     G   +    + D+ L+  I++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKTLLDTILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   +   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|302036739|ref|YP_003797061.1| transcription antitermination factor NusB [Candidatus Nitrospira
           defluvii]
 gi|190343154|gb|ACE75542.1| transcription antitermination protein [Candidatus Nitrospira
           defluvii]
 gi|300604803|emb|CBK41135.1| Transcription antitermination factor NusB [Candidatus Nitrospira
           defluvii]
          Length = 157

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   AR  +  +L        +   L D          L    ++    +V       
Sbjct: 1   MASRHQARERAVQILFQYDIHGQAGPWLDDFWIQYPLAEEL----RVFAERLVAGVRANK 56

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             +DA++     +  + R     + +LR+   ++L+  +V     ++ A+E AK    + 
Sbjct: 57  KELDALIGTYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSF-GDE 115

Query: 119 HFAKLVNSILRR 130
             +K VN IL +
Sbjct: 116 EASKFVNGILDK 127


>gi|182439837|ref|YP_001827556.1| transcription antitermination protein NusB [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326780501|ref|ZP_08239766.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1]
 gi|238689031|sp|B1W456|NUSB_STRGG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|178468353|dbj|BAG22873.1| putative NusB-family protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326660834|gb|EGE45680.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1]
          Length = 143

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 3/135 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  S+  +L      S               +V    ++ 
Sbjct: 1   MAARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYA 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +   + R     + +LR+   +++++D   D  V+D AV+ AK      
Sbjct: 61  DRIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAKEF-STD 119

Query: 119 HFAKLVNSILRRVSR 133
                VN +L R   
Sbjct: 120 DSPSFVNGLLARFKD 134


>gi|86749756|ref|YP_486252.1| transcription antitermination protein NusB [Rhodopseudomonas
           palustris HaA2]
 gi|119390808|sp|Q2IWR9|NUSB_RHOP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86572784|gb|ABD07341.1| NusB antitermination factor [Rhodopseudomonas palustris HaA2]
          Length = 169

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +               +        +    R +V+  +R  
Sbjct: 25  AARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQYLPAEAAFFRDVVSGVVRDQ 84

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            ++D ++D  L     L R    L+ ++R    ++ +  D+    VV   V+ A      
Sbjct: 85  KKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 143

Query: 118 RHFAKLVNSILRRVSREK 135
           +    +VN++L +++R+ 
Sbjct: 144 KDETGMVNAVLDQIARQF 161


>gi|254383581|ref|ZP_04998931.1| transcription antitermination protein NusB [Streptomyces sp. Mg1]
 gi|194342476|gb|EDX23442.1| transcription antitermination protein NusB [Streptomyces sp. Mg1]
          Length = 144

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 3/135 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  NAR  +  +L    ++ + +  +L      +               +V      +
Sbjct: 1   MAARSNARKRAFQILFEADQRGVPVRDVLADWIRHARSDDRQPPVSAFTMDLVEGYADKV 60

Query: 61  PRIDA-VLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID  ++ + +   L R     + ++R+   ++++  D  D   +D AV+ AK    + 
Sbjct: 61  NRIDDLIITYAVDWDLDRMPVVDRNIVRLGAYELIWVDDTPDAVAIDEAVQLAKEFSTDE 120

Query: 119 HFAKLVNSILRRVSR 133
                VN +L R   
Sbjct: 121 S-PSFVNGLLARFKD 134


>gi|147677514|ref|YP_001211729.1| transcription termination factor [Pelotomaculum thermopropionicum
           SI]
 gi|189035895|sp|A5D319|NUSB_PELTS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146273611|dbj|BAF59360.1| transcription termination factor [Pelotomaculum thermopropionicum
           SI]
          Length = 144

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +  +L  V                D  F  L ++ Q   R +V  TL  L  
Sbjct: 2   SRRQARERALQILFQVDVGGADPGEAFR--LMDEGFGEL-KKYQEFARLLVGGTLENLAA 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID V+  V    ++ R     + ++R+++ +I +  D+     V+ AVE  K        
Sbjct: 59  IDRVIAGVSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGKTYGGEES- 117

Query: 121 AKLVNSILRRVSREKIEL 138
            + +N IL R+     E 
Sbjct: 118 GRFINGILGRIVESPEEY 135


>gi|219872292|ref|YP_002476667.1| transcription antitermination protein NusB [Haemophilus parasuis
           SH0165]
 gi|254772642|sp|B8F8R7|NUSB_HAEPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219692496|gb|ACL33719.1| transcription antitermination protein N utilization substance B
           (NusB) [Haemophilus parasuis SH0165]
          Length = 137

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L      + S+  +   E      + +   D    R ++  T+ 
Sbjct: 1   MKVSPRRRARECAVQALYSWYISQNSIEQV---ELAFVTDQDMQGVDMPYFRKLLRGTVE 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
            +  ID +L   L  +        + +LR++  ++ + LDV     ++ A+E AK    +
Sbjct: 58  NVDVIDDILRPYLDRADNELDPIERTILRLAGYELKFELDVPYKVAINEAIEVAK-VFGS 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 DDSHKYVNGVLDK 129


>gi|85715455|ref|ZP_01046436.1| transcription antitermination protein NusB [Nitrobacter sp.
           Nb-311A]
 gi|85697650|gb|EAQ35526.1| transcription antitermination protein NusB [Nitrobacter sp.
           Nb-311A]
          Length = 160

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  +            +        +    R +V   +R  
Sbjct: 17  AARLAAVQALYQMEISGAGVNDVFAEFDSHWLGNEVEGDRYLPAEAAFFRDVVAGVVRDQ 76

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            RID ++D  L     L R    L+ +LR    ++ +  D+    VV   V+ A    EN
Sbjct: 77  VRIDPLIDDALSKGWPLKRIAAILRAVLRAGSYELEHRKDIPARVVVSEYVDVAHAFVEN 136

Query: 118 RHFAKLVNSILRRVSREK 135
              A +VN++L +++R  
Sbjct: 137 EE-AGMVNAVLDQIARRF 153


>gi|167586433|ref|ZP_02378821.1| NusB antitermination factor [Burkholderia ubonensis Bu]
          Length = 145

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    S   +     G   +    + D+ L+ AI++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKDLLDAILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   L   L   + +     + +L ++  ++ +  +     +++ AVE  K    +
Sbjct: 58  EHATLAEALTPCLDRPIDQLSPIERAVLLIATFELTHHVETPYRVIINEAVELTKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|257095841|ref|YP_003169482.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048365|gb|ACV37553.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 164

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L             ++   GDS      + D+     ++   L    
Sbjct: 18  SPRRRAREFALQALYQWQLSGND-EAAIEAHLGDSE--GFDKADREFFAGLLRGVLAQRR 74

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHF 120
            +   L   L             +L     ++  +       +++ +VE AK        
Sbjct: 75  TLQEQLQAFLDRPFGELSPVEACVLLAGAFELNNHPQTPYGVIINESVELAKGFGGTDG- 133

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 134 HKYVNGVLDK 143


>gi|282866212|ref|ZP_06275259.1| NusB antitermination factor [Streptomyces sp. ACTE]
 gi|282558996|gb|EFB64551.1| NusB antitermination factor [Streptomyces sp. ACTE]
          Length = 143

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 3/135 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  S+  +L      S               +V    ++ 
Sbjct: 1   MAARNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYA 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +   + R     + +LR+   +++++D   D  V+D AV+ AK      
Sbjct: 61  DRIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDSTPDAVVIDEAVQLAKEF-STD 119

Query: 119 HFAKLVNSILRRVSR 133
                VN +L R   
Sbjct: 120 DSPSFVNGLLARFKD 134


>gi|51892987|ref|YP_075678.1| transcription termination factor [Symbiobacterium thermophilum IAM
           14863]
 gi|81610502|sp|Q67NA9|NUSB_SYMTH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|51856676|dbj|BAD40834.1| transcription termination factor [Symbiobacterium thermophilum IAM
           14863]
          Length = 153

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 8/140 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTL 57
           S   AR ++   L  +          +            A   L +      R +V    
Sbjct: 2   SRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESAEFARRLVRGAW 61

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115
           +     D ++        + R     + +LR++V +I++  DV D   V  AVE AK   
Sbjct: 62  QHREESDRLIAQYARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTF- 120

Query: 116 ENRHFAKLVNSILRRVSREK 135
                ++ VN IL  V R  
Sbjct: 121 STADSSRFVNGILGSVIRGM 140


>gi|90406964|ref|ZP_01215155.1| N utilization substance protein B [Psychromonas sp. CNPT3]
 gi|90312006|gb|EAS40100.1| N utilization substance protein B [Psychromonas sp. CNPT3]
          Length = 139

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   +      +  +  +++    D  F   S+ D    + ++   + 
Sbjct: 1   MKPAERRRARQFAVQAVYQWQITKGPVGQIIEQFSVDQDF---SKTDVPYFKELLAGVVS 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
            +  ID  L   L   +         +LR+++ ++ Y  DV    V++ A+E AK    +
Sbjct: 58  RIETIDEKLSPYLSRKIGDVDMVDIAILRLAMFELSYRTDVPHKVVLNEAIELAKDFATD 117

Query: 118 RHFA 121
             + 
Sbjct: 118 ESYK 121


>gi|168034692|ref|XP_001769846.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678955|gb|EDQ65408.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 557

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
            + FD VL+DAPCS+ G   R          D + + A +QR+L+ Q +  V+P G +V+
Sbjct: 417 PQSFDRVLLDAPCSALGL--RPRLFAGQETLDGLRQHANYQRRLIDQAVQLVRPNGTLVY 474

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLN-----SAYWKSIDMAMALSPEGWIRITPD 418
           S C+L+  ++E VV+ VL + P  V L P +            D+    +   W+R   +
Sbjct: 475 STCTLNPGENEGVVRYVLDTYP-FVSLSPQHPQIGGPGLVGGEDVFDGATHRPWLRKGEE 533

Query: 419 MLEKIDGVSSGMD--GFFAVAL 438
            L +        D  GFF    
Sbjct: 534 QLVQRFDPVGPRDTIGFFVAKF 555


>gi|325923217|ref|ZP_08184896.1| transcription antitermination factor NusB [Xanthomonas gardneri
           ATCC 19865]
 gi|325546299|gb|EGD17474.1| transcription antitermination factor NusB [Xanthomonas gardneri
           ATCC 19865]
          Length = 131

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 5/125 (4%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              +            ++     + A       D     ++V   L     +D  L   L
Sbjct: 1   MQAVYAWQISGGFAKQVISQFAHEQAH---EVADLAYFESLVEGVLTNRAELDTALTPYL 57

Query: 72  ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              +       + +LR++  ++LY  DV    V++ A+E AKR   + H    VN +L R
Sbjct: 58  DRGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDR 116

Query: 131 VSREK 135
            S E 
Sbjct: 117 ASVEW 121


>gi|149177355|ref|ZP_01855960.1| transcription antitermination protein NusB [Planctomyces maris DSM
           8797]
 gi|148843880|gb|EDL58238.1| transcription antitermination protein NusB [Planctomyces maris DSM
           8797]
          Length = 171

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR +   +L  +          ++           ++  +     +    + F 
Sbjct: 1   MSLRKQARFLVVQMLYQIDLN---PDISINEIREMIEEHGRNKTARTFAWELFTGVMEFK 57

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            ++D  +  V  + +L R   + + +LR+   ++L+ D     V+D AVE A+    + H
Sbjct: 58  QQLDEHIVRVAENWTLKRMAVTDRNILRLGTYELLHTDTPPAVVIDEAVELAREF-GSAH 116

Query: 120 FAKLVNSILRR 130
            ++ VN IL +
Sbjct: 117 SSQFVNGILDK 127


>gi|282899437|ref|ZP_06307404.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195701|gb|EFA70631.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Cylindrospermopsis raciborskii
           CS-505]
          Length = 315

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 92/277 (33%), Gaps = 17/277 (6%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP--E 210
             RL +   +E     +     P    +    +                   +  L   E
Sbjct: 12  AHRLFDNPDEEAKFIAALVHPQPFSPSILWCQNPPETPPFTTETPTSWQPKFVDRLQVGE 71

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKV 266
                     G ++  D S+     +          VLD+CAAPGGK+           +
Sbjct: 72  RPGQHALHQAGAFYCLDFSSIFAASVLLTIEQPLTLVLDVCAAPGGKSIFAWKALQPDLI 131

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRR 324
            + +V ++RL  L  NL R  +    ++  D              V+VDAPCS    + +
Sbjct: 132 ISNEVIRKRLGMLISNLKRCQIKPSYVLNKDTSVLAQMLKQSMSLVIVDAPCSGQSLLAK 191

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
                       I K+A  Q++++      V P G +V+  C+   +++E+V    L   
Sbjct: 192 REKAPGCFHQTVINKNANRQKRIIANSAGIVAPQGYLVYMTCTYSLEENEQVCTWFLERF 251

Query: 385 PIP--VELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
           P    VE+ PL+        +          R+ P  
Sbjct: 252 PQFKPVEVSPLSPYRSHLTTIP-------CYRMFPQK 281


>gi|238620455|ref|YP_002915281.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4]
 gi|238381525|gb|ACR42613.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4]
          Length = 368

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 35/352 (9%)

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158
                 +L  E +KR   + +         +     + +     +     P W +E+L  
Sbjct: 35  PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90

Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212
                 +        +             +  ++E+   +          I++K+ P  +
Sbjct: 91  LLDINALKRKLSERWMWARVNILKTDIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269
            SL    +    + D ++S+ V+         ++DL +APG K +  ++   + A+    
Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210

Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           DV  +RL +    L R  +      II  D+         D +L+DAPCSS+G I   P 
Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269

Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           +L     ++ I K A  Q+ LL + +        +V++ CSL  ++ E V++        
Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +  +P ++         +        R  P +           +GFF   L
Sbjct: 323 DIAEMPFSNYQSSYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363


>gi|167720799|ref|ZP_02404035.1| transcription antitermination protein NusB [Burkholderia
           pseudomallei DM98]
          Length = 145

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    +   +     G   +    + D+ L+  I++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKTLLDTILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   +   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHATLAEAISPSLDRPIEQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|91792506|ref|YP_562157.1| transcription antitermination protein NusB [Shewanella
           denitrificans OS217]
 gi|119390818|sp|Q12Q42|NUSB_SHEDO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91714508|gb|ABE54434.1| NusB antitermination factor [Shewanella denitrificans OS217]
          Length = 133

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +      + ++  +      +   + +   D    R ++     
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSKNNVADVEHEFITE---QNIDGVDVAYFRELLAGVAS 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +ID +L   L           + ++R++  ++ +  DV     ++ A+E AK     
Sbjct: 58  KHEQIDDLLRPHLDRKFEDVSPVEKAIVRLAGYELTFRKDVPYKVAINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 DDSHKFVNGLLDK 129


>gi|71659529|ref|XP_821486.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886867|gb|EAN99635.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 714

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 91/288 (31%), Gaps = 69/288 (23%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK----------------------TAQLI 260
              Q+  + +P  L         LD+CA+PG K                           
Sbjct: 157 ISRQEEVSMLPPFLLDIQPTDKCLDMCASPGSKTAQILVALGRHKVVPVDSDASPFTFDY 216

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL---------------YAEDIIEMDAFDYCPKK 305
            S   V A ++  +R   L   + RL L                          +     
Sbjct: 217 ESEGLVMANEIDTKRANMLVHQVKRLRLLFPFALFTNHDARYFPNVKCAASLVGNADEDL 276

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            FD +L D  CS  GTIR+ P +       + +     Q ++ L+     + GG VV+S 
Sbjct: 277 RFDKILCDVVCSGDGTIRKAPHIFKIWSPREAIILQKTQIQIALRACHLSRVGGRVVYST 336

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS---------------IDMAMALSPE 410
           CS++  ++E VV +++  +   ++LV   S                     ++ +A S E
Sbjct: 337 CSMNPIENEAVVAQIVHRTRGAMKLVDARSLLPGLQCAPGLQRWVVTNFKGELVVAPSDE 396

Query: 411 GWIRITPD-----------------MLEKIDGVSSGMDGFFAVALRRL 441
               + P                  +  ++     G   FF   L ++
Sbjct: 397 AHEALFPPNTPGAYASAAVNELDLRLCMRLYPSHCGGGAFFIAVLDKV 444


>gi|299135081|ref|ZP_07028272.1| NusB antitermination factor [Afipia sp. 1NLS2]
 gi|298590058|gb|EFI50262.1| NusB antitermination factor [Afipia sp. 1NLS2]
          Length = 166

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  +            +        +    R +V+  +R  
Sbjct: 22  AARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDEYLPAEAAFFRDVVSGVVRDQ 81

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            +ID +LD  L     L R +  L+  LR    ++ +  DV    V+   V+ A      
Sbjct: 82  GKIDPMLDEALTRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYVDVAHAFV-E 140

Query: 118 RHFAKLVNSILRRVSREK 135
              A +VN++L +++R+ 
Sbjct: 141 ADEAGMVNAVLDQIARQF 158


>gi|42522579|ref|NP_967959.1| hypothetical protein Bd1019 [Bdellovibrio bacteriovorus HD100]
 gi|39575111|emb|CAE78952.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 296

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 32/260 (12%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
            +     +      +   +     +   ++ D ++ +  +         +LD+CAAPGGK
Sbjct: 57  ELPGCHWLTPAHGCQPERNSDELLD--IYIMDPASVMVARALDVQPGDRLLDMCAAPGGK 114

Query: 256 ---TAQLIVSGAKVTALDVSKRRLEK----LRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306
                +      ++   D+S  R E+    ++  + R       +   D   +  K+   
Sbjct: 115 SLVMIESFGGEGEIFCNDLSPERRERLKKVIQQYVPREVRNRVWVTGKDGVQFGLKEPGS 174

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD VL+DAPCS    I  +               A  Q  LL      VK GG +V+S C
Sbjct: 175 FDRVLLDAPCSGERHILENQAAQDEWSPRRTEHLAARQYSLLAAAFLAVKVGGRIVYSTC 234

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           S+   ++++VV+K      +  +           + +    +  G +   PD        
Sbjct: 235 SISPAENDDVVRK------LLKKKKSAVKLLEAPVGVGGERTELG-VAYMPDQC------ 281

Query: 427 SSGMDGF---FAVALRRLIQ 443
                GF   +   + ++ +
Sbjct: 282 -----GFGPLYFAVIEKVEE 296


>gi|227821538|ref|YP_002825508.1| transcription antitermination protein NusB [Sinorhizobium fredii
           NGR234]
 gi|254772651|sp|C3M9I9|NUSB_RHISN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|227340537|gb|ACP24755.1| N utilization substance protein B [Sinorhizobium fredii NGR234]
          Length = 160

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + L      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMEIGGTGVLEIVAEFEAHRLGQELDGETYLKADASWFRSIVSGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            ++D ++   L    +L R   +++ +LR    ++L   DV    +V   VE AK   E+
Sbjct: 78  RKLDPLIGSALQDDWALSRLDSTVRAILRAGTFELLERKDVPVAVIVTEYVEIAKAFFED 137

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 138 EE-PKLVNAVLDR 149


>gi|189192789|ref|XP_001932733.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187978297|gb|EDU44923.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 834

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 79/244 (32%), Gaps = 69/244 (28%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDA 314
            A D   +R   L   + RL+     + + DA  +                 +D +L D 
Sbjct: 234 IANDSDYKRAGMLVHQVKRLNFPNLIVTQHDASIFPSIELPSVDGQKKQYLKYDRILADV 293

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCS  GT R++P+V       D +     Q ++L +G+  +K GG +V+S CSL+  ++E
Sbjct: 294 PCSGDGTARKNPNVWQKWTPKDGLGLHGLQLRILFRGLQMLKKGGRLVYSTCSLNPVENE 353

Query: 375 EV-------------VQKV--------LRSSPI--PVELVPLNSAYWKSIDMAMALSPEG 411
            V             VQ V        LR  P     +++   S        A   +   
Sbjct: 354 AVVAAAIEACGGNSKVQLVDCSDHLPNLRRKPGLNAWKVLDTTSTTAGGEKTAHMFTNWE 413

Query: 412 WIR------------------ITPDMLE----------------KIDGVSSGMDGFFAVA 437
             +                  ITP                    ++        GFF   
Sbjct: 414 AFQKAKAKYEIEEPERQFSQKITPGCFPPVPKSPEERIPLERCIRVYPHLQDTGGFFIAI 473

Query: 438 LRRL 441
           L +L
Sbjct: 474 LEKL 477


>gi|15922756|ref|NP_378425.1| Sun family protein [Sulfolobus tokodaii str. 7]
 gi|15623547|dbj|BAB67534.1| 342aa long hypothetical sun protein [Sulfolobus tokodaii str. 7]
          Length = 342

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 127/347 (36%), Gaps = 48/347 (13%)

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161
             V  + E A+R   + +       +  +  R+K+    +     ++PEWF+  L+  Y 
Sbjct: 30  RSVKDSYELARRLILSYYS------LSGKSYRKKVREFLQKGVRIVLPEWFERELDGIYD 83

Query: 162 KERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTG-----GIRLKELPESIVSL 215
            E++          ++I +  +K D +     L    +            K +   I S 
Sbjct: 84  IEKLKD--SFLDRVIWIRVNTLKADEDKVIKSLENEGIILEKDKDIPYAYKVVKGDIRST 141

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVS 272
             F E    +QD ++   ++         + D+ +APG K + ++    + +++   DV 
Sbjct: 142 TEFKEFKVIIQDKASMAVIEALKPEKGELIFDMASAPGIKASLIMALTDNQSELVVSDVD 201

Query: 273 KRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           + RL K    L  + +      II  D+         D VL+DAPCSSTG I   P VL 
Sbjct: 202 RERLHKEIKFLHDVGVNMDKVHIIHQDSTS-SSVIKADKVLLDAPCSSTGMISNEPTVLL 260

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
                 + + +  Q+ LL + +S       V+++ CSL  Q+ E +V++     P+    
Sbjct: 261 KLTKQRVNELSELQKNLLNKALSI---SSYVIYATCSLLPQEGEYIVKEFNAKPPLSFAS 317

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
                                       +  +        +GFF   
Sbjct: 318 SN-------------------------SLGNRFIPYLHQSEGFFISK 339


>gi|261416658|ref|YP_003250341.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373114|gb|ACX75859.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326771|gb|ADL25972.1| NOL1/NOP2/sun family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 253

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 23/227 (10%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLR 280
           +  D ++    +       + VLD+CAAPGGK+  +         +   D S  R  +L+
Sbjct: 40  YFLDEASVFAAKALAVEPGMDVLDMCAAPGGKSLVIASMLKGEGSLQCNDRSPDRRLRLQ 99

Query: 281 C------NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
                        +      +   F    K+ +D +L+DAPCSS   +   P  L     
Sbjct: 100 HVLENSLPESWRSIINVSGYDGVKFGMHKKECYDRILLDAPCSSDRHVLNSPSHLEVWSV 159

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
             + + +  Q  LL   +  ++PGG +++  C+L   +++ VV K+L+   +      + 
Sbjct: 160 KRVKRLSVEQGSLLASAVDALRPGGELIYGTCALSPLENDAVVAKILKKRKM------ME 213

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               + +      +  G + I PD       +       +   +R++
Sbjct: 214 FVRIEDLPEGADRTELG-VHILPDKAHGCGPI-------YCAKMRKV 252


>gi|299537762|ref|ZP_07051051.1| N utilization substance protein B-like protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726741|gb|EFI67327.1| N utilization substance protein B-like protein [Lysinibacillus
           fusiformis ZC1]
          Length = 127

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 12/136 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +  +L  +    +++   +    G                 IVN T   L
Sbjct: 1   MK-RHEAREKALQVLFQLDNTDLTVEEAMGHIKGQPTN--------AFYEKIVNGTAEHL 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA L+  L   SL R     + +LR++V ++LY+ +     V++ A+E  K    + 
Sbjct: 52  EEIDATLEQHLEKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELCKTF-GDD 110

Query: 119 HFAKLVNSILRRVSRE 134
             +K VN +L + + +
Sbjct: 111 SSSKFVNGVLSKFTEQ 126


>gi|50729750|ref|XP_416643.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 362

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 123/350 (35%), Gaps = 32/350 (9%)

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
             R  A      L   ++ K++       +    + +   L + +   R +     C   
Sbjct: 21  RPRRGAAQTPEQLENKTKGKLQKQTCQVVLDHFEKQYSTELGDAWSSVREVLTYPLCWQH 80

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLP---------GFAEG 221
             + L            L A               + L   +   P              
Sbjct: 81  AVL-LNKFSHTADLEDTLCAQGYHPAFRGTLPYLPRSLKCYVSRTPRRFPSQKHQAGKLK 139

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-----DVSKRRL 276
            +++ +A++ +PV      +   VLDLCAAPGGK+  ++   +          ++  R L
Sbjct: 140 EYYLLNAASVLPVLALEVKDGEDVLDLCAAPGGKSVAILQCASPGELHCNEYDELRSRWL 199

Query: 277 EKLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW-TR 332
           ++   +     L+      I++         + +D VLVDAPCS+  +     D+   T 
Sbjct: 200 KQTMESFIPRPLFNLITVSILDGRQIGELKPEFYDKVLVDAPCSNDRSWLFSSDIQQATL 259

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                 + +  Q +LL   I  ++PGG +V+S C+L K ++ +V+  VL S    + +  
Sbjct: 260 RLLQRKELSVLQFQLLRSAIKALRPGGSLVYSTCTLSKAENSDVINLVLNSCTNVIPVDI 319

Query: 393 LNSAYWKSIDMAM-ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              A   S      + + +  + + P+               +   L+++
Sbjct: 320 SEIAQAVSQQFTFHSDTQQHELLVLPEKGRAWGP-------MYIAKLKKV 362


>gi|147837899|emb|CAN67145.1| hypothetical protein VITISV_042360 [Vitis vinifera]
          Length = 324

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 36/240 (15%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL--------------VRAIV 53
           R VS+  L  +         LL+     S    +   ++ L              V  IV
Sbjct: 60  RAVSAVRLMRIELGGAFAD-LLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIV 118

Query: 54  NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
             ++R+   +D ++  +     +    +  L Q+LR+   +I+ LD+  YAVVD  V  A
Sbjct: 119 GGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLA 178

Query: 112 KRDKENRHFAKLVNSILR--------------RVSREKIELLQRIAGISIIPEWFKERLE 157
           K        A +VN+ILR              ++  +     + +A +   P W   R  
Sbjct: 179 KVALRP-GAANMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWT 237

Query: 158 NFYGKERVLAISDACISPLYIDLTVK----FDIETWAHKLNAVMLPTGGIRLKELPESIV 213
            + G+E  + +     S     L       F       +L  + +P       +    I 
Sbjct: 238 KYLGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIR 297


>gi|167855582|ref|ZP_02478342.1| transcription antitermination protein NusB [Haemophilus parasuis
           29755]
 gi|167853273|gb|EDS24527.1| transcription antitermination protein NusB [Haemophilus parasuis
           29755]
          Length = 137

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L      + S+  +   E      + +   D    R ++  T+ 
Sbjct: 1   MKVSPRRRARECAVQALYSWYISQNSIEQV---ELAFVTDQDMQGVDMPYFRKLLRGTVE 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
            +  ID +L   L  +        + +LR++  ++ + LDV     ++ A+E AK    +
Sbjct: 58  NVDVIDDILRPYLDRADNELDPIERTILRLASYELKFELDVPYKVAINEAIEVAK-VFGS 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 DDSHKYVNGVLDK 129


>gi|67622853|ref|XP_667832.1| FLJ20303 protein [Cryptosporidium hominis TU502]
 gi|54659000|gb|EAL37602.1| FLJ20303 protein [Cryptosporidium hominis]
          Length = 744

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI------------VSGAKVTALD 270
              Q+A + +PV       N  VLDLC+APG KT+Q+I                 V A D
Sbjct: 127 IMRQEAVSMLPVLFLDVKPNHYVLDLCSAPGSKTSQIIEILQSEQAVTGEYPKGFVIAND 186

Query: 271 VSKRRLEKLRCNLDR-------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           +  RR   L  +                 H     +    +     K  FD +L D PCS
Sbjct: 187 LDTRRAHMLIHHTRHLNSPSLIVTTHSADHFPDIYLSNPSSESLKEKFYFDRILCDVPCS 246

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFSNCSLDKQDSEEV 376
           S GT+R++P++         +     QR +LL+ +S +KP  G++V+S CS +  ++E V
Sbjct: 247 SDGTLRKNPNLFAKWSISFSLGLHRLQRNILLRALSILKPKEGLLVYSTCSFNPLENEAV 306

Query: 377 VQKV---LRSSPIPVELVP 392
           V  V   L +  I VE+V 
Sbjct: 307 VSSVISSLANRGIQVEIVD 325


>gi|220934735|ref|YP_002513634.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996045|gb|ACL72647.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
          Length = 149

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   +R V+   L            +L     D     L + D    R ++      +  
Sbjct: 12  ARRQSRRVAMQALYQWQLTGYHPKDILLQYREDP---ELEKADADYFRELLLGVTEQVDE 68

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D +L   +  S+       + +LR++  ++   +D+    V++ AVE  K+        
Sbjct: 69  LDELLAPQMDRSVAELDPVERAILRLATFELKQRIDIPYRVVINEAVELTKKFGATD-AH 127

Query: 122 KLVNSILRR 130
           K VN +L +
Sbjct: 128 KFVNGVLDK 136


>gi|94499928|ref|ZP_01306464.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Oceanobacter sp.
           RED65]
 gi|94428129|gb|EAT13103.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Oceanobacter sp.
           RED65]
          Length = 184

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   N R +++ +L  V+ ++ SL  LL     D     L   D+  +++I     R  
Sbjct: 1   MKPLHNVRSIAAVILLGVIDEKKSLNTLLPYHSRD-----LLPEDKAQLQSICFGACRHF 55

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             I+A+   +L   LP K    Q LL + + Q+ +  + ++A +   V  A  + +   F
Sbjct: 56  FSINALSKMLLDKPLPEKARLTQSLLWIGLYQLAHSHMPEHAAIHQTV-AACDNLKQTPF 114

Query: 121 AKLVNSILRRVSREKIELLQRIA----GISIIPEWFKERLENFYGKERVLAISDACISPL 176
            KL+N+ILRR  REK +LL  +          P+W  ++L+  + +       +A     
Sbjct: 115 KKLINAILRRFQREKDQLLNDLKSSDVPHYEHPKWLLKKLKKDWPEHWQSIALNANQQAP 174

Query: 177 Y 177
            
Sbjct: 175 M 175


>gi|119716645|ref|YP_923610.1| transcription antitermination factor NusB [Nocardioides sp. JS614]
 gi|166215705|sp|A1SJD8|NUSB_NOCSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119537306|gb|ABL81923.1| NusB antitermination factor [Nocardioides sp. JS614]
          Length = 135

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +       LD    +                +V   +   
Sbjct: 1   MSARSKARKRALDVLFASDVRGEDAVAALDRAIAEGEGPTND-----YTATLVRGVVEHQ 55

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID +L        L R     + +LR+ V ++LY  DV D   V  A+        + 
Sbjct: 56  ARIDELLSSYSHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMALVTDLSTDE 115

Query: 119 H 119
            
Sbjct: 116 S 116


>gi|323509313|dbj|BAJ77549.1| cgd5_3560 [Cryptosporidium parvum]
          Length = 362

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI------------VSGAKVTALD 270
              Q+A + +PV       N  VLDLC+APG KT+Q+I                 V A D
Sbjct: 127 IMRQEAVSMLPVLFLDVKPNHYVLDLCSAPGSKTSQIIEILQSEQAVTGEYPKGFVIAND 186

Query: 271 VSKRRLEKLRCNLDR-------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           +  RR   L  +                 H     +    +     K  FD +L D PCS
Sbjct: 187 LDTRRAHMLIHHTRHLNSPSLIVTTHSADHFPDIYLSNPSSESLKEKFYFDRILCDVPCS 246

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFSNCSLDKQDSEEV 376
           S GT+R++P++         +     QR +LL+ +S +KP  G++V+S CS +  ++E V
Sbjct: 247 SDGTLRKNPNLFAKWSISFSLGLHRLQRNILLRALSILKPKEGLLVYSTCSFNPLENEAV 306

Query: 377 VQKV---LRSSPIPVELVP 392
           V  V   L +  I VE+V 
Sbjct: 307 VSSVISSLANRGIHVEIVD 325


>gi|78046359|ref|YP_362534.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325928457|ref|ZP_08189648.1| transcription antitermination factor NusB [Xanthomonas perforans
           91-118]
 gi|119390847|sp|Q3BXH9|NUSB_XANC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78034789|emb|CAJ22434.1| transcription termination factor NusB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541174|gb|EGD12725.1| transcription antitermination factor NusB [Xanthomonas perforans
           91-118]
          Length = 162

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +            ++     + A       D      +V   L     +D  L   L 
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLSNRAELDTALTPYLD 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            S+       + +LR++  ++LY  DV    V++ A+E AKR   + H    VN +L R 
Sbjct: 87  RSVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145

Query: 132 SREK 135
           + E 
Sbjct: 146 AVEW 149


>gi|66358202|ref|XP_626279.1| CNcl1p/MJ0026/YebU-like.  SUN family methylase [Cryptosporidium
           parvum Iowa II]
 gi|46227283|gb|EAK88233.1| CNcl1p/MJ0026/YebU-like.  SUN family methylase [Cryptosporidium
           parvum Iowa II]
          Length = 745

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI------------VSGAKVTALD 270
              Q+A + +PV       N  VLDLC+APG KT+Q+I                 V A D
Sbjct: 128 IMRQEAVSMLPVLFLDVKPNHYVLDLCSAPGSKTSQIIEILQSEQAVTGEYPKGFVIAND 187

Query: 271 VSKRRLEKLRCNLDR-------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
           +  RR   L  +                 H     +    +     K  FD +L D PCS
Sbjct: 188 LDTRRAHMLIHHTRHLNSPSLIVTTHSADHFPDIYLSNPSSESLKEKFYFDRILCDVPCS 247

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFSNCSLDKQDSEEV 376
           S GT+R++P++         +     QR +LL+ +S +KP  G++V+S CS +  ++E V
Sbjct: 248 SDGTLRKNPNLFAKWSISFSLGLHRLQRNILLRALSILKPKEGLLVYSTCSFNPLENEAV 307

Query: 377 VQKV---LRSSPIPVELVP 392
           V  V   L +  I VE+V 
Sbjct: 308 VSSVISSLANRGIHVEIVD 326


>gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Thermobispora bispora DSM 43833]
 gi|296092157|gb|ADG88109.1| NusB antitermination factor [Thermobispora bispora DSM 43833]
          Length = 144

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  +L     + +S   +LD    ++   +L          +V   +R   RI
Sbjct: 12  RTQARQRALDILFEAEARAVSPLQVLDERAKEADPPVLE-----YTVTLVEGVVRHQDRI 66

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++       +L R     + +LR    ++L+  DV +  V+   V  A  +       
Sbjct: 67  DELISTYAQGWTLDRMPAVDRNILRAGTYEMLWSTDVPENVVISEWVRLA-AELSTDESP 125

Query: 122 KLVNSILRRVSR 133
             VN +L R   
Sbjct: 126 HFVNGLLARFKE 137


>gi|126653060|ref|ZP_01725195.1| transcription antitermination protein NusB [Bacillus sp. B14905]
 gi|126590161|gb|EAZ84285.1| transcription antitermination protein NusB [Bacillus sp. B14905]
          Length = 127

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 12/136 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +  +L  +    +++   +    G                 IV  T   L
Sbjct: 1   MK-RHEAREKALQVLFQLDNTDLTVEEAMGHIKGQPTN--------AFYEKIVTGTAEHL 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA L+  L   SL R     + +LR++V ++LY+ +     V++ A+E  K    + 
Sbjct: 52  EEIDATLEQHLEKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELCKTF-GDD 110

Query: 119 HFAKLVNSILRRVSRE 134
             +K VN +L + + +
Sbjct: 111 SSSKFVNGVLSKFTEQ 126


>gi|78065528|ref|YP_368297.1| transcription antitermination protein NusB [Burkholderia sp. 383]
 gi|119372282|sp|Q39IR3|NUSB_BURS3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77966273|gb|ABB07653.1| NusB antitermination factor [Burkholderia sp. 383]
          Length = 145

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    S   +     G   +    + D+ L+ AI++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKELLEAILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   L   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHATLVEALTPSLDRPIEQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|312091304|ref|XP_003146932.1| hypothetical protein LOAG_11363 [Loa loa]
 gi|307757905|gb|EFO17139.1| hypothetical protein LOAG_11363 [Loa loa]
          Length = 434

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 64/404 (15%), Positives = 136/404 (33%), Gaps = 25/404 (6%)

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVA-QILYLDVADYAVVDLAVE 109
            +   TLRF   ++ +L+      L  K +  + LL V +   I    +           
Sbjct: 39  RLCCETLRFRNCLERILEGKEFHDLLTKLHFDRYLLYVLLYDHIFGQGLNKAKKAYSNAI 98

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169
             +    +     + + I                         K   +      +    S
Sbjct: 99  LKRAAYIDEQLETMKDMIEEAKGHVAQLSAVVENPRYARVNTLKWSFDEALQALQDEGWS 158

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
            + + P   D   K  + +       +      + L      +       +G   +QD +
Sbjct: 159 ISSLEPQEDDDWYKIAVSSMLKNQVYIDCHVNELLLFPANADLHQHWMVIDGYLLLQDKA 218

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286
           + +   +        + D+CAAPG KT  L   + +  K+ A+D +  R++ L   +D+ 
Sbjct: 219 SCLSSLVLNPKAGTYIFDICAAPGMKTTHLAALVQNEGKIWAIDRASDRVKTLCTMVDKA 278

Query: 287 HLYAEDIIEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLW---TRDTDDIVK 339
                     D                 L+D PCS +G ++R   ++      +T  +  
Sbjct: 279 GAINVSTCCGDFLRTDVTSKRFDKVRYALLDPPCSGSGIVKRMDQLINGEERINTSRLQS 338

Query: 340 SACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS-A 396
            +  Q  LL   +    +K    +V+S CS+ ++++E+V++++L    +  +   + +  
Sbjct: 339 LSNLQAMLLKHALGLPNLKK---IVYSTCSIYEEENEQVIEEILNDEFLRTQFKLIKAMP 395

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            W     A     +  +R  P++           +GFF    +R
Sbjct: 396 EWPHRGRANYSFGDKCLRALPEI--------DLTNGFFVAVFKR 431


>gi|281349376|gb|EFB24960.1| hypothetical protein PANDA_019517 [Ailuropoda melanoleuca]
          Length = 333

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL  
Sbjct: 107 KKYYLLNAASLLPVLALELRDGERVLDLCAAPGGKSIALLQCAYPGYLHCNEHDSLRLRW 166

Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331
           LR      + +  +    + E+D  +    +   FD VLVDAPCS+  +           
Sbjct: 167 LRQTLESFIPQPLVNVIKVSELDGREMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAA 226

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                       Q +LL   I  ++PGG++V+S C+L K ++++V+ ++L S    + + 
Sbjct: 227 CRISQRRNLPVLQIELLRSAIKALRPGGLLVYSTCTLSKAENQDVICEILNSYTNIMPVD 286

Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A   S D   A + +   + + PD  +            +   L++
Sbjct: 287 IKEMAKTCSQDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 329


>gi|320011921|gb|ADW06771.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331]
          Length = 143

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  S+  +L      S               +V    ++ 
Sbjct: 1   MAARNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYA 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +   + R     + +LR+   +++++D   D  V+D AV+ AK    + 
Sbjct: 61  DRIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELVWMDSTPDAVVIDEAVQLAKEFSTDD 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|77461236|ref|YP_350743.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           Pf0-1]
 gi|119390800|sp|Q3K652|NUSB_PSEPF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77385239|gb|ABA76752.1| N utilization substance protein B [Pseudomonas fluorescens Pf0-1]
          Length = 166

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L      R SL  +      D+ F   +  D    R I++   +F  
Sbjct: 26  AKRREARQLATQALYQWHMARQSLNEIEAQFRVDNDF---TDVDGAYFREILHGVPQFKT 82

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 83  EIDNALTPCLDLAIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGH 142

Query: 121 A 121
            
Sbjct: 143 K 143


>gi|256821700|ref|YP_003145663.1| NusB antitermination factor [Kangiella koreensis DSM 16069]
 gi|256795239|gb|ACV25895.1| NusB antitermination factor [Kangiella koreensis DSM 16069]
          Length = 142

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 7/139 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+    AR  +   +         L  +          + +   D +  + + +  L  L
Sbjct: 9   MRRR--AREYAMQAIYQWQMSDNPLNEIEAQYLTTMNAKKV---DTVYFQELFSGVLTNL 63

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119
             ID  L   L   +       + ++R+S  ++   +DV    V++  +E AK       
Sbjct: 64  DEIDEALAPALEREIEGIDPIERAIIRLSAFELKKRVDVPKKVVINEGIELAKTFGATDG 123

Query: 120 FAKLVNSILRRVSREKIEL 138
             K VN +L ++S+     
Sbjct: 124 -HKFVNGVLDKISKALRPH 141


>gi|156094750|ref|XP_001613411.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802285|gb|EDL43684.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1116

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 58/245 (23%)

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------- 302
            K          V A D + +R   L   L  +H     +   +A ++            
Sbjct: 280 KKLISNSNPTGVVVANDANFKRCCMLFHRLKNIHSNCLVVTNNNAINFPYIYVKDEEGNT 339

Query: 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             K+ FD+VL D PCS  GT+R+  ++    +  +       Q  +L + I   K GG +
Sbjct: 340 NEKRYFDSVLCDVPCSGDGTLRKDRNIWLNWNPFNAYNLFQMQVSILKRSIELTKEGGNI 399

Query: 362 VFSNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWKSIDMAMALSPEG-------- 411
           V+S CSL+  ++E V+ +V     +   ++L+   +     ++    L+           
Sbjct: 400 VYSTCSLNPIENEAVICEVFSSLENRNCLKLINFGNELIDKLNFKEGLTEWKVMMDDQWF 459

Query: 412 --------WIR------------------ITPD----------MLEKIDGVSSGMDGFFA 435
                   +++                   TPD           +++         GFF 
Sbjct: 460 DTYEEYCTYLQNKREGKYKKIYDKIQHGMFTPDEEFMKEINLKYVKRFFPHHYNAGGFFI 519

Query: 436 VALRR 440
             +++
Sbjct: 520 AVIKK 524


>gi|170782398|ref|YP_001710731.1| transcription termination protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189035882|sp|B0REX0|NUSB_CLAMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169156967|emb|CAQ02136.1| transcription termination protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 137

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +  S+   L +E   +A     Q      R I    +   
Sbjct: 1   MSARTKARKRALDVLYVADIRGESIPATLAVEQQRAAAEPDRQASWAYAREIAEGFVEHQ 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID +++      +L R     + +LR+ + +IL+  DV D   +  +V+ A       
Sbjct: 61  DEIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLA-SSLSTD 119

Query: 119 HFAKLVNSILRR 130
             A  VN +L R
Sbjct: 120 ESASFVNGMLAR 131


>gi|186475383|ref|YP_001856853.1| transcription antitermination protein NusB [Burkholderia phymatum
           STM815]
 gi|238691269|sp|B2JED0|NUSB_BURP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|184191842|gb|ACC69807.1| NusB antitermination factor [Burkholderia phymatum STM815]
          Length = 145

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   +    + D   + AI++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPAGEIDAQLRGAQGY---DKADHEHLDAILHGVIRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A L   L   + +     + +L V+  ++  ++D+    V++ AVE AK      
Sbjct: 58  SEALSADLAPCLDRPIDQLSPVERAVLLVAAYELKNHIDIPYRVVINEAVELAKTFGGAD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|195497866|ref|XP_002096282.1| GE25147 [Drosophila yakuba]
 gi|194182383|gb|EDW95994.1| GE25147 [Drosophila yakuba]
          Length = 532

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 22/237 (9%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDV 271
                     +Q+ + S+  +L       +VLD+CAAPG KT     ++ +   + +++ 
Sbjct: 300 HELVHSKRLILQNKATSLAAELLAPPMGATVLDMCAAPGMKTLHLCNVMQNKGCIYSVEQ 359

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVL 329
            + R + L    ++        I  DA +       D   +LVD  CS +G   R     
Sbjct: 360 DRVRYKTLCDITEQAGCEIVKPILGDALNLTSDSYEDVEYILVDPSCSGSGMQSRMTVCD 419

Query: 330 WTRDTDDIVKSACFQRKLLLQGI---SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             +D   + K    Q K+L   +     VK    + +  CSL K+++E+VV++ L+ +P 
Sbjct: 420 EPKDDSRLYKLQGLQIKILSHAMGSFPNVK---RIAYCTCSLWKEENEQVVERCLQLNPS 476

Query: 387 PVEL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              L     L + +    D       +  +   PD        S   DG F     +
Sbjct: 477 YKLLSCKKALRNKWHNVGDKDYPNIGKNCLYCLPD--------SDLTDGIFLALFEK 525


>gi|167563762|ref|ZP_02356678.1| transcription antitermination protein NusB [Burkholderia
           oklahomensis EO147]
 gi|167570906|ref|ZP_02363780.1| transcription antitermination protein NusB [Burkholderia
           oklahomensis C6786]
          Length = 145

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    +   +     G   +    + D+ L+  I++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKTLLDTILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   +   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHAALAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|70732819|ref|YP_262586.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           Pf-5]
 gi|119390798|sp|Q4K597|NUSB_PSEF5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68347118|gb|AAY94724.1| N utilization substance protein B [Pseudomonas fluorescens Pf-5]
          Length = 166

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L      + SL  +      D+ F  +   D    R I++       
Sbjct: 26  AKRREARQLATQALYQWHMAKHSLNEIEAQFRVDNDFTDI---DGAYFREILHGVPANKN 82

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 83  EIDTALVPCLDLAIDELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGH 142

Query: 121 A 121
            
Sbjct: 143 K 143


>gi|301787891|ref|XP_002929361.1| PREDICTED: putative methyltransferase NSUN3-like [Ailuropoda
           melanoleuca]
          Length = 337

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             +++ +A++ +PV      +   VLDLCAAPGGK+  L+           +    RL  
Sbjct: 111 KKYYLLNAASLLPVLALELRDGERVLDLCAAPGGKSIALLQCAYPGYLHCNEHDSLRLRW 170

Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331
           LR      + +  +    + E+D  +    +   FD VLVDAPCS+  +           
Sbjct: 171 LRQTLESFIPQPLVNVIKVSELDGREMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAA 230

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                       Q +LL   I  ++PGG++V+S C+L K ++++V+ ++L S    + + 
Sbjct: 231 CRISQRRNLPVLQIELLRSAIKALRPGGLLVYSTCTLSKAENQDVICEILNSYTNIMPVD 290

Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
               A   S D   A + +   + + PD  +            +   L++
Sbjct: 291 IKEMAKTCSQDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333


>gi|330922271|ref|XP_003299775.1| hypothetical protein PTT_10834 [Pyrenophora teres f. teres 0-1]
 gi|311326433|gb|EFQ92133.1| hypothetical protein PTT_10834 [Pyrenophora teres f. teres 0-1]
          Length = 863

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 101/320 (31%), Gaps = 101/320 (31%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------------- 266
              Q+  + IP         + VLD+CAAPG K+AQL                       
Sbjct: 159 ISRQEVVSMIPPHFLDVKPGMVVLDMCAAPGSKSAQLAEMIHGDEEERVQRVANGESVDL 218

Query: 267 ----------------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------- 302
                            A D   +R   L   + RL+     + + DA  +         
Sbjct: 219 ADDGDYTDDGRSTGLLIANDSDYKRAGMLVHQVKRLNFPNLIVTQHDASIFPSIELPSVD 278

Query: 303 ----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                   +D +L D PCS  GT R++P+V       D +     Q ++L +G+  +K G
Sbjct: 279 GQKKQYLKYDRILADVPCSGDGTARKNPNVWQKWTPKDGLGLHGLQLRILFRGLQMLKKG 338

Query: 359 GIVVFSNCSLDKQDSEEV-------------VQKV--------LRSSPI--PVELVPLNS 395
           G +V+S CSL+  ++E V             VQ V        LR  P     +++  +S
Sbjct: 339 GRLVYSTCSLNPVENEAVVAAAIEACGGNSKVQLVDCSDHLPNLRRKPGLNAWKVLDTSS 398

Query: 396 AYWKSIDMAMALSPEGWIR------------------ITPDMLE---------------- 421
           A       A   +     +                  ITP                    
Sbjct: 399 ATAGGEKTAHMFTNWEAFQKAKAKYEVEEPERQFSQKITPGCFPPVPKSPEDRIPLERCI 458

Query: 422 KIDGVSSGMDGFFAVALRRL 441
           ++        GFF   + +L
Sbjct: 459 RVYPHLQDTGGFFIAIIEKL 478


>gi|242002804|ref|XP_002436045.1| williams-beuren syndrome critical region protein, putative [Ixodes
           scapularis]
 gi|215499381|gb|EEC08875.1| williams-beuren syndrome critical region protein, putative [Ixodes
           scapularis]
          Length = 445

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 20/226 (8%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
             A++ + V          V+D CAAPG KT  +   + +  K+ A+D  + R   LR  
Sbjct: 224 AQAASGMAVVALAPTPGSVVIDACAAPGMKTTYIAALMENTGKILAMDHDQERTLSLRDL 283

Query: 283 LDRLHLYAED-IIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
           + R  +     +   D     P++    DA  +    S TG+   +      RD    + 
Sbjct: 284 VQRAGVSGICKVRTADFLTVDPEQSPYCDAEFILVDPSCTGSGMTNRLEPNPRDAAQNLD 343

Query: 340 SACF----QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
                   Q  LL     F K    + +S CS+  +++EEVV + LR +    +L  +  
Sbjct: 344 RLRKLRAIQAMLLKHATKFPKVR-RIAYSTCSVHAEENEEVVGEALRFTRGRFQLEKVLP 402

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +++  +      E  +R++P+             GFF     R+
Sbjct: 403 -EFENRGLDRYEFGECCVRMSPETTFTR--------GFFLAVFVRV 439


>gi|209517108|ref|ZP_03265955.1| NusB antitermination factor [Burkholderia sp. H160]
 gi|209502501|gb|EEA02510.1| NusB antitermination factor [Burkholderia sp. H160]
          Length = 144

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   +    + D   + AI++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGY---DKADHEHLDAILHGVMRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A +   L   + +     + +L V+  ++  +LD+    V++ AVE  K    + 
Sbjct: 58  SEALSAAIAPCLDRPIDQLSPVERAVLLVAAFELKNHLDIPYRVVINEAVELTKTFGGSD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|50954771|ref|YP_062059.1| transcription termination factor [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|71648799|sp|Q6AF91|NUSB_LEIXX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50951253|gb|AAT88954.1| transcription termination factor [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 144

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  LL     ++ISL   L +E   +A     +   +  R IV+  +   
Sbjct: 1   MSARTKARKRALDLLFSADVRQISLAHALAVEAERAANEPAREASWLYAREIVDGVIDNQ 60

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             ID  ++      +L R     + +LR+ V ++L+ D V D   +  AVE A       
Sbjct: 61  EEIDEQIETYAQGWTLARMPAVDRAILRIGVWELLFNDQVPDGVAISEAVEAAT-VLSTD 119

Query: 119 HFAKLVNSILRRVSRE 134
             A  VN +L ++++ 
Sbjct: 120 DSAGFVNGLLAKIAQN 135


>gi|290953006|ref|ZP_06557627.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313772|ref|ZP_06804346.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           tularensis subsp. holarctica URFT1]
          Length = 130

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 18/136 (13%)

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF-VKPGGIVVFS 364
            F+ +++DAPCS+ GTIRR+PD+   R  +DI      Q K+L    +  +   G ++++
Sbjct: 8   KFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWNNNLTDNGYLLYT 67

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            CS+  +++++ +++ L  +         N+A    ID+          ++ P   +   
Sbjct: 68  ICSILAEENQQQIKEFLAKN---------NNAKIIEIDILEKYKTSYGYQLLPSQQDG-- 116

Query: 425 GVSSGMDGFFAVALRR 440
                 DGF+   L++
Sbjct: 117 ------DGFYYCLLKK 126


>gi|302824331|ref|XP_002993809.1| hypothetical protein SELMODRAFT_431844 [Selaginella moellendorffii]
 gi|300138329|gb|EFJ05101.1| hypothetical protein SELMODRAFT_431844 [Selaginella moellendorffii]
          Length = 383

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 24/234 (10%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRL 276
             +++ DA++ +  +         VLDLCAAPGGKT  ++         + A + S  R 
Sbjct: 137 FDYYLMDAASVLVTEALDLEVGDKVLDLCAAPGGKTLGILQQLDLLQGALVANEPSPTRS 196

Query: 277 EKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           ++L   +             +   +   +    L+D VLVDAPCSS   +   P  L T 
Sbjct: 197 KRLSKVISEYVPANLRTSIRVTRRNGIKWMEHDLYDKVLVDAPCSSERHLLHDPKELGTW 256

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                   A  Q  LL   +   K  G +V+S CSL + +++ V+ K L    +  E++ 
Sbjct: 257 TPRRTENCAKRQLALLFAALRAAKLYGRIVYSTCSLSQLENDSVISKALEKGKLDFEII- 315

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL-IQPK 445
                W   +     +  GWI I PD+ +    +       +   L++L  +P+
Sbjct: 316 --QKQWPVGER----TEHGWI-ILPDVSQGWGPI-------YIAVLKKLSTKPE 355


>gi|78222837|ref|YP_384584.1| NusB antitermination factor [Geobacter metallireducens GS-15]
 gi|119390772|sp|Q39V65|NUSB_GEOMG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78194092|gb|ABB31859.1| NusB antitermination factor [Geobacter metallireducens GS-15]
          Length = 138

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R ++  LL          + LL++ + ++     +   +     +V   L   
Sbjct: 1   MGARRLGREIALQLLYSRDYTVGEASSLLEMVFDEAEPGTAAG--RAFSDELVRGVLEHR 58

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             IDA +     +  + R       +LR+++ ++LY  D+     ++ A+E AK+     
Sbjct: 59  ETIDATITEKSKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAIEVAKKF-GTE 117

Query: 119 HFAKLVNSILR 129
                +N IL 
Sbjct: 118 DSPAFINGILD 128


>gi|307293552|ref|ZP_07573396.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1]
 gi|306879703|gb|EFN10920.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1]
          Length = 148

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56
           KS   ARL +   L  +  +   +  LL   +       +        ++     +V   
Sbjct: 6   KSRSAARLAAVQALYQLEMEGTPIHLLLHEFHQHRLGATIEDVTYAQAEESFFDDVVQGV 65

Query: 57  LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
            R    IDA++   L    SL R    ++Q+LR    ++L   DVA    +   V+ A  
Sbjct: 66  DRRREEIDALIAARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVDVAHA 125

Query: 114 DKENRHFAKLVNSILR 129
              ++  A  VN +L 
Sbjct: 126 FY-DKREAGFVNGLLD 140


>gi|21241522|ref|NP_641104.1| transcription antitermination protein NusB [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|24638072|sp|Q8PPD5|NUSB_XANAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21106870|gb|AAM35640.1| transcription termination factor NusB [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 159

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +            ++     + A       D      +V   L     +D  L   L 
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLSNRAELDTALTPYLD 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            S+       + +LR++  ++LY  DV    V++ A+E AKR   + H    VN +L R 
Sbjct: 87  RSVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145

Query: 132 SREK 135
           + E 
Sbjct: 146 AVEW 149


>gi|326913075|ref|XP_003202867.1| PREDICTED: putative methyltransferase NSUN3-like, partial
           [Meleagris gallopavo]
          Length = 330

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 98/241 (40%), Gaps = 17/241 (7%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTA 268
                       +++ +A++ +PV      +   VLDLCAAPGGK+  ++      +   
Sbjct: 97  PSQKHQAGKLKEYYLLNAASVLPVLALEVKDGEDVLDLCAAPGGKSVVILQCARPGQFHC 156

Query: 269 LDVSK---RRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322
            +  +   R L++   +     ++    +  +D       K   +D +LVDAPCS+  + 
Sbjct: 157 NEYDELRSRWLKQTMESFIPHPVFNLITVSNLDGRQIGELKPEFYDKILVDAPCSNDRSW 216

Query: 323 RRHPDVLW-TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
               D+   T       + +  Q +LL   I  ++PGG +V+S C+L K+++  V+  +L
Sbjct: 217 LFSSDIQQATLRLLQRNELSVLQFQLLRSAIKALRPGGSLVYSTCTLSKEENSSVINLIL 276

Query: 382 RSSPIPVELVPLNSAYWKSIDMAM-ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            S    + +     A   S +    + +    + + P+               +   L++
Sbjct: 277 NSCTNVIPVNISEIAKAVSQEFTFHSGTQHHELLVLPEKGRAWGP-------MYVAKLKK 329

Query: 441 L 441
           +
Sbjct: 330 M 330


>gi|134294984|ref|YP_001118719.1| transcription antitermination protein NusB [Burkholderia
           vietnamiensis G4]
 gi|166215672|sp|A4JC81|NUSB_BURVG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|134138141|gb|ABO53884.1| NusB antitermination factor [Burkholderia vietnamiensis G4]
          Length = 145

 Score = 90.0 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    S   +     G   +    + D+ L+ AI++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKELLEAILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   +   L   + +     + +L ++  ++ +  +     +++ AVE  K    +
Sbjct: 58  EHATLVEAITPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELTKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|145482435|ref|XP_001427240.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394320|emb|CAK59842.1| unnamed protein product [Paramecium tetraurelia]
          Length = 390

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 108/299 (36%), Gaps = 41/299 (13%)

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
               I +     +YI    +   E+   +    +            + +   P F +G  
Sbjct: 111 EQNKIYEQEKKYIYIRALQQLPFESDPDEHIPNLCKVDYDI---YSQYLSKNPEFLKGNT 167

Query: 224 WVQDASASIPVQLFGTLNNLS----VLDLCAAPGGKTAQLIVSGAKV------TALDVSK 273
           ++  + +S         N       ++D CAAPG KT QL     +        A++  +
Sbjct: 168 YIVQSKSSALPAYLLLRNIKDKIADIIDCCAAPGNKTIQLSHYAKQNNITGKIYAIERDE 227

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHP----- 326
           +R E L+  L++ +    + +  D     P+   +    L+D  CS +G ++        
Sbjct: 228 KRFEILKNRLNKYNCDNVEPLNFDFLTIKPQDYPNVKIALLDPSCSGSGMLQLRMIEASK 287

Query: 327 ----DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
                V   ++      S   Q+  +L  ++F K   ++++S CS+ K+++E+V    L 
Sbjct: 288 DDSIQVPENKNEQVTQLSQFQQK--MLHHLTFFKKLKLIIYSTCSIYKEENEDVANNFLA 345

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                  +       ++ +D       + ++R+ P             DGFF    +R 
Sbjct: 346 HHQKWESVNLFPEWPYRGVDNN-----QHYVRVPPKE----------SDGFFVAMFKRK 389


>gi|328873410|gb|EGG21777.1| Putative nucleolar protein [Dictyostelium fasciculatum]
          Length = 475

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 9/162 (5%)

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR---HPDVLWTRDTDDIVKSACFQ 344
           L            Y     +D V+VDA CS   +IR    +  +       ++ +    Q
Sbjct: 307 LPDLYFSTDYFMRYSNSLYYDRVIVDAECSLDASIRHLIQYSKIGRNFIPSELTELTNLQ 366

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           +KLL  G + +K GG++V+S CS  K ++E+VV  +L ++P   +L P      +  +  
Sbjct: 367 KKLLQTGFNLLKEGGVLVYSTCSFCKAENEDVVTWLLENNPNS-QLEPCFGDTDRDTESD 425

Query: 405 MALSPEGWIRITPD-----MLEKIDGVSSGMDGFFAVALRRL 441
                   I + P               +G  G F   + ++
Sbjct: 426 GDGQSNQNITVVPFSRGYIKHTYRFYPKNGTSGMFIARIVKM 467



 Score = 38.0 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
           IE         +         +    I S P + +G+ +  DAS+   +         +V
Sbjct: 113 IEQELKTPLKELAWLPNFYQLKSTVGISSSPSYKKGIMYGMDASSGAAILALDPQPGDNV 172

Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           LD+C APG K   +   I     VT +D+S  RL   +  + +  +    + + DA  + 
Sbjct: 173 LDICCAPGTKFCMIADLIKGQGSVTGVDISPSRLGSCKTVIKKYKIPKARLFQCDATTFN 232

Query: 303 PKKL 306
            K  
Sbjct: 233 IKAP 236


>gi|330953122|gb|EGH53382.1| transcription antitermination protein NusB [Pseudomonas syringae
           Cit 7]
          Length = 165

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGPYFRELLHGVATNQT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            IDA L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDAALSPCLDLTIEELDPIELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141

Query: 121 A 121
            
Sbjct: 142 K 142


>gi|16125609|ref|NP_420173.1| transcription antitermination protein NusB [Caulobacter crescentus
           CB15]
 gi|221234359|ref|YP_002516795.1| transcription antitermination protein NusB [Caulobacter crescentus
           NA1000]
 gi|22095966|sp|Q9A8J3|NUSB_CAUCR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772622|sp|B8H535|NUSB_CAUCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13422711|gb|AAK23341.1| N utilization substance protein B [Caulobacter crescentus CB15]
 gi|220963531|gb|ACL94887.1| N utilization substance protein B [Caulobacter crescentus NA1000]
          Length = 149

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 9/136 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVT 56
           +    ARL +   L  +      +  ++                L+  D+     +    
Sbjct: 7   QPRSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLARGV 66

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
           +    +ID  +   L     L R   + + +LR    +++Y  DV    V++  VE AK 
Sbjct: 67  VTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIAKS 126

Query: 114 DKENRHFAKLVNSILR 129
             E    +  +N  L 
Sbjct: 127 FFEGPE-SGFINGALD 141


>gi|322494338|emb|CBZ29639.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 413

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 42/264 (15%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR 274
           +  F    +++ D +++  V+        +VLD+CAAPGGK+  +    +   AL  ++ 
Sbjct: 144 IDAFGIKAYYLLDYASAHVVEQLQVGAFDTVLDMCAAPGGKSIAVAQFLSPDGALTCNET 203

Query: 275 RLEKLRCNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRR 324
           R ++       L  +           + DA  +     F  VLVDAPCSS          
Sbjct: 204 RADRCARLRRNLQEHVPVNYVPWRTTQRDAQTWYDPGAFSRVLVDAPCSSERHLLQQSGG 263

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P  L     +   + A  QR LL + I   + GG +V+S CS+   +++ VV +VL+ +
Sbjct: 264 SPLSLREWSEETTAQLAALQRMLLQRAIETCRVGGRIVYSTCSISPLENDGVVGEVLQRT 323

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPE-------------------------GWIRITPDM 419
              V+++  +SA   +       + +                             + PD 
Sbjct: 324 RCEVKVIKTSSATAAAPVAPPKTATDASESDASGAEACGLHTPTVLGEATAYGRLLLPDA 383

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443
                         F   L +  +
Sbjct: 384 CHGWGP-------MFFCVLEKTAE 400


>gi|260897994|ref|ZP_05906490.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           parahaemolyticus Peru-466]
 gi|308088047|gb|EFO37742.1| ribosomal RNA small subunit methyltransferase F [Vibrio
           parahaemolyticus Peru-466]
          Length = 264

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            +++ A  Q+ L+      +KPGG++V+S C+L  +++++V   +  +    VE   L+ 
Sbjct: 1   SVLEIADTQKDLIESAFHALKPGGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLDG 60

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +    +   AL+ EG++ I P + +          GFF   +R+
Sbjct: 61  LFE---NANAALTEEGFLHIFPQVYDCE--------GFFVARIRK 94


>gi|312963299|ref|ZP_07777782.1| N utilization substance protein B [Pseudomonas fluorescens WH6]
 gi|311282379|gb|EFQ60977.1| N utilization substance protein B [Pseudomonas fluorescens WH6]
          Length = 166

 Score = 89.6 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR +++  L        SL  +      D+ F      DQ     I++     L  
Sbjct: 27  KRRAARQLATQALYQRHMAGTSLNEIEAQFRVDNDFTF---ADQSYFHDILHGVPANLTE 83

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           IDA L   L  +L         +LR+S  ++L  +DV    V++  +E AK         
Sbjct: 84  IDAALTPCLDLTLEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVYGSTDGHK 143


>gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Actinosynnema mirum DSM 43827]
 gi|255923558|gb|ACU39069.1| NusB antitermination factor [Actinosynnema mirum DSM 43827]
          Length = 139

 Score = 89.6 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  ++    ++ +    LL    G +    +++       ++V       
Sbjct: 1   MGARTKARKRAVDVIYEADQRGVDAVTLLSDRVGSTDVPPINE----YTVSLVEGVTAHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + +LRV + ++L+  DV D   +D AVE AK      
Sbjct: 57  ARIDDLISEHSEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVELAKG-LSTD 115

Query: 119 HFAKLVNSILRR 130
              + VN +L R
Sbjct: 116 DSPRFVNGVLGR 127


>gi|237797516|ref|ZP_04585977.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331020366|gb|EGI00423.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 165

 Score = 89.6 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D      +++       
Sbjct: 25  AKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNV---DGTYFHELLHGVATNKT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141

Query: 121 A 121
            
Sbjct: 142 K 142


>gi|260821818|ref|XP_002606300.1| hypothetical protein BRAFLDRAFT_67540 [Branchiostoma floridae]
 gi|229291641|gb|EEN62310.1| hypothetical protein BRAFLDRAFT_67540 [Branchiostoma floridae]
          Length = 476

 Score = 89.6 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 117/369 (31%), Gaps = 26/369 (7%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHF--AKLVNSILRRVSREKIELLQRIAGISIIP 149
           +  +  V    V+D    Q  R   +        + +                   +++ 
Sbjct: 114 EFKHNRVPSQLVLDHFDRQYGRQFGSDWSDIKAALMAPKLNGILLNNFTEVSSKVATMLE 173

Query: 150 EWFKERLENFYGKER---VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206
           E   + + +            ++    +     + +            + +        +
Sbjct: 174 EQRLQNVSDICSVLEKTLTPHLNKHDEAQEEEAIGLSEPFRNHQKNAESKLKFYIHPENR 233

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV 266
            +              +++Q A++ +PV       + SVLD+CAAPGGK+  L+ +    
Sbjct: 234 HVWFPKHKHVPRQLKQYFLQGAASLLPVLALDVQQDDSVLDMCAAPGGKSLALLQTAELG 293

Query: 267 T--ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCS 317
              + +    R  +L   L            +D                FD VLVDAPCS
Sbjct: 294 LLTSNEPDLWRKRRLVETLQSYIPQEILATRVDMTKLSGVHFGNVAPNAFDKVLVDAPCS 353

Query: 318 STGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           +  +       V      +D       Q  LL   +  V+PGG VV++ C+L ++++++V
Sbjct: 354 NDRSWLYNRNSVGMQMRMEDRRHLPQLQASLLRSALHAVRPGGSVVYATCTLSQKENDDV 413

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI----TPDMLEKIDGVSSGMDG 432
           V+ V          + + +    + +       +   R      P +             
Sbjct: 414 VESVFEQFSKNKSRIDVINLSNLTENFWRIFRFDSSTRFGQLVLPHLDANWGP------- 466

Query: 433 FFAVALRRL 441
            +   L+++
Sbjct: 467 MYFAKLKKV 475


>gi|21552772|gb|AAM62319.1|AF416611_1 Williams-Beuren Syndrome critical region protein 20 copy C [Homo
           sapiens]
          Length = 291

 Score = 89.6 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 81/247 (32%), Gaps = 39/247 (15%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261
           +      +   P +  G   +QD ++ +P  L                  KT+ L     
Sbjct: 6   VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLK 65

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317
           +  K+ A D+  RRL  +   L    +   ++ E D     P          VL+D  CS
Sbjct: 66  NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
            +G   R  +                                 +V+S CSL ++++E++V
Sbjct: 126 GSGMPSRQLEEPGAGTPSP-----------------------RLVYSMCSLCQEENEDMV 162

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           Q  L+ +P    L P   A      ++     E  +R +P              GFF   
Sbjct: 163 QDALQQNPGAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAV 213

Query: 438 LRRLIQP 444
           + R+  P
Sbjct: 214 IERVEMP 220


>gi|94500355|ref|ZP_01306887.1| transcription antitermination protein NusB [Oceanobacter sp. RED65]
 gi|94427390|gb|EAT12368.1| transcription antitermination protein NusB [Oceanobacter sp. RED65]
          Length = 128

 Score = 89.6 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              L        SL+ +      D+    +S+ D    R I+    R L  +D  L   L
Sbjct: 1   MQALYQWDLAGASLSNIEAEFLTDN---DMSKVDTEYFRDILRGVPRELDDLDEKLAPCL 57

Query: 72  ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
             ++       + +LR+   ++L+ +DV    V++ +VE +K+   N    
Sbjct: 58  SRNMQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESHK 108


>gi|150396046|ref|YP_001326513.1| transcription antitermination protein NusB [Sinorhizobium medicae
           WSM419]
 gi|166215721|sp|A6U7P8|NUSB_SINMW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150027561|gb|ABR59678.1| NusB antitermination factor [Sinorhizobium medicae WSM419]
          Length = 160

 Score = 89.6 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + L        D    R+IV   +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGDTYLRADASWFRSIVAGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            ++D ++   L    +L R   +++ +LR    +IL   DV    +V   VE AK   ++
Sbjct: 78  RKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKDVPVPVIVTEYVEIAKAFFQD 137

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 138 EE-PKLVNAVLDR 149


>gi|15964969|ref|NP_385322.1| transcription antitermination protein NusB [Sinorhizobium meliloti
           1021]
 gi|307301040|ref|ZP_07580809.1| NusB antitermination factor [Sinorhizobium meliloti BL225C]
 gi|307317774|ref|ZP_07597212.1| NusB antitermination factor [Sinorhizobium meliloti AK83]
 gi|22095960|sp|Q92QT9|NUSB_RHIME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15074148|emb|CAC45795.1| Putative N utilization substance protein B [Sinorhizobium meliloti
           1021]
 gi|306896536|gb|EFN27284.1| NusB antitermination factor [Sinorhizobium meliloti AK83]
 gi|306903995|gb|EFN34581.1| NusB antitermination factor [Sinorhizobium meliloti BL225C]
          Length = 160

 Score = 89.6 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + L        D    R+IV   +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGDTYLRADASWFRSIVAGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            ++D ++   L    +L R   +++ +LR    +IL   DV    +V   VE AK   ++
Sbjct: 78  RKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKDVPVPVIVTEYVEIAKAFFQD 137

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 138 EE-PKLVNAVLDR 149


>gi|318057074|ref|ZP_07975797.1| transcription antitermination protein NusB [Streptomyces sp.
           SA3_actG]
 gi|318080976|ref|ZP_07988308.1| transcription antitermination protein NusB [Streptomyces sp.
           SA3_actF]
 gi|333028359|ref|ZP_08456423.1| putative transcription antitermination protein NusB [Streptomyces
           sp. Tu6071]
 gi|332748211|gb|EGJ78652.1| putative transcription antitermination protein NusB [Streptomyces
           sp. Tu6071]
          Length = 144

 Score = 89.6 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      S               +V       
Sbjct: 1   MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRGDTQQPPVSEYTMELVEGYAEHA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID V+        L R     + ++R+   +++++D   D  V+D AVE AK    + 
Sbjct: 61  RRIDEVIAKYSVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAKEFSTDD 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|157874150|ref|XP_001685566.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128638|emb|CAJ08770.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 414

 Score = 89.6 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 105/288 (36%), Gaps = 31/288 (10%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLP--GFAEGVWWVQDASASIPVQLFGTLNNLS 244
           +    KL    L      L      I   P   F    +++ D +++  V+        +
Sbjct: 114 DDDEAKLQGKALAAAADDLLHRNGVIDKPPIDAFGIKAYYLLDYASAHVVEQLQVGAFDT 173

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY------AEDIIEMDA 298
           VLD+CAAPGGK+  +    +   AL  ++ R ++       L  +           + DA
Sbjct: 174 VLDMCAAPGGKSIAVAQFLSPDGALTCNEARADRCARLRRNLQEHVPVNYVPWRTTQRDA 233

Query: 299 FDYCPKKLFDAVLVDAPCSST----GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
             +     F  VLVDAPCSS           P  L     +  V+ A  QR LL + I  
Sbjct: 234 QTWYDPGAFSRVLVDAPCSSERHLLQQSGGSPLSLREWSEETTVQLAALQRMLLQRAIET 293

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN--------SAYWKSIDMAMA 406
            + GG +V+S CS+   +++ VV +VL+ +   V+++  +         A  K+   A  
Sbjct: 294 CRVGGRIVYSTCSISPLENDGVVGEVLQRTRCEVKVIKTSPAAAAAAPVALPKTATDAGE 353

Query: 407 LSPEGWIRITPD----------MLEKIDGVSSGMDG-FFAVALRRLIQ 443
               G     P               +   +    G  F   L +  +
Sbjct: 354 SDASGAEACAPHTPTVLGEATAYGRLLLPDTCHGWGPMFLCVLEKTAE 401


>gi|254282810|ref|ZP_04957778.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR51-B]
 gi|219679013|gb|EED35362.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR51-B]
          Length = 149

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +   L      R  LT +      D+ F  +          ++   +R    +
Sbjct: 12  RRKARHYALQALYQWTMNRNDLTEIEAEFRVDNDFSHVDGE---YFHELLTGIVRTADSL 68

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
           D  L  +L  S+       + LLR+   ++   +DV     ++ AV  AK+      F
Sbjct: 69  DESLVPLLDRSISELDPVERNLLRLGAFELRDRIDVPYKVAINEAVALAKKFGATDSF 126


>gi|294010264|ref|YP_003543724.1| N utilization substance protein B [Sphingobium japonicum UT26S]
 gi|292673594|dbj|BAI95112.1| N utilization substance protein B [Sphingobium japonicum UT26S]
          Length = 148

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56
           KS   ARL +   L  +  +   L  LL   +       +        ++     +V   
Sbjct: 6   KSRSAARLAAVQALYQLEMEGTPLHLLLHEFHQHRLGATIEDVTYAQAEESFFDDVVQGV 65

Query: 57  LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
            R    IDA++   L    SL R    ++Q+LR    ++L   DVA    +   V+ A  
Sbjct: 66  DRRREEIDALIVARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVDVAHA 125

Query: 114 DKENRHFAKLVNSILR 129
              ++  A  VN +L 
Sbjct: 126 FY-DKREAGFVNGLLD 140


>gi|268533144|ref|XP_002631700.1| Hypothetical protein CBG20899 [Caenorhabditis briggsae]
          Length = 789

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/451 (15%), Positives = 142/451 (31%), Gaps = 75/451 (16%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK--KYSLQ---QLLRVSVAQ------IL 94
           + L+R +   +L+F P  D +L       L +     ++     LL V + +      + 
Sbjct: 359 KALLR-LSCESLKFRPVFDEILK---DKELRKMKNDPNINGSVDLLYVLMYETLVGSGLN 414

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
                  +V+     + K  ++           ++       +++          +W  E
Sbjct: 415 RCSQEMKSVISRRATRMKEVEKELGADGRGIKSIKEAEEGAKKIVIPRYARINTLKWTVE 474

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214
                   E    +  A        +    ++     + + +        L     +I +
Sbjct: 475 EALKTLETEEWKILGTA-------SVEKFPELVANMKE-DEIYKDPHVENLLIFAPNIQN 526

Query: 215 LPGF---AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268
              +    +    +QD ++ +P  L        V D CAAPG KT+    ++ +  KV A
Sbjct: 527 FHEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMDNQGKVWA 586

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRR 324
           +D +  R+  ++  LD   +        D                 +VD PCS +G ++R
Sbjct: 587 MDRAADRVATMKQLLDGSKVAIASAFCGDFLKTDVTDKKFSKVKFAIVDPPCSGSGIVKR 646

Query: 325 HPDV-----------------------------LWTRDTDDIVKSACFQRKLLLQGISFV 355
             ++                                           FQ  +L   +   
Sbjct: 647 MDEITGGNAEKERLEKLKNLQVKRHEGLNLEQNNINSKKMAADYKLHFQAMILKHALKL- 705

Query: 356 KPG-GIVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAMALSPEGW 412
            PG    V+S CS+ ++++E+VV +VL  +       L       W    ++     E  
Sbjct: 706 -PGLKRAVYSTCSIHEEENEQVVDEVLLDTYVRQNFVLKKDVLPEWTHRGLSTYEVGEHC 764

Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           +R  P +           +GFF     R+ +
Sbjct: 765 LRADPKVTL--------TNGFFVAVFERVKK 787


>gi|157132768|ref|XP_001662635.1| Nop2p, putative [Aedes aegypti]
 gi|108871080|gb|EAT35305.1| Nop2p, putative [Aedes aegypti]
          Length = 491

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 121/368 (32%), Gaps = 32/368 (8%)

Query: 93  ILYLDVADYAVVDLAVEQAKRDKE-NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           +   DV D   V    E A+   +  +   + +        +  I+    +AG+      
Sbjct: 134 LYKEDVPDLEGVREVNETAEEFVDYKKSLNRTLRDDAEMDFQRLIDHNVGVAGLQEFIPA 193

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
            K +    +  E          +   + + ++   E      N  +       + +    
Sbjct: 194 SKLKGMEDFISESDHYKYYNNSADFPVSIEMEHSFE---IPENLEIFSYERGNVSDFRPP 250

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTAL 269
                G      ++ D ++ +P           VLD CA+PGGK       +    +   
Sbjct: 251 RSCSTGVLSH--FLMDGASVLPALALDVQPGDRVLDACASPGGKSLLMLQTLRPGTLVCN 308

Query: 270 DVSKRRLEK--------LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST-- 319
           DV + R+ K             +        +   DA D    +++D +LVD PC++   
Sbjct: 309 DVQESRVNKIKKLMNSYFYNFGEACKKQRCFVTHQDARDIKEYEMYDRILVDVPCTTDRH 368

Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
             +    ++  +    + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV  
Sbjct: 369 SVMENDNNIFKSSRVKERLRLPELQAGILTNCMKLLRPGGTLVYSTCSLSPVQNDGVVHM 428

Query: 380 VLRS----SPIPVELVPLNSAYWKSID---MAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
            L +    + + + +  L+       D    A   + +    + P +             
Sbjct: 429 ALSNVFSDTGMTLTVKDLSLVMQPFSDMYKFAYPNTLKYGQLVLPFLPANFGP------- 481

Query: 433 FFAVALRR 440
            +   L R
Sbjct: 482 MYFCKLVR 489


>gi|300087424|ref|YP_003757946.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527157|gb|ADJ25625.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 136

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+V+   L  V         +++       F  L    + L ++I+  TL   
Sbjct: 1   MPRRHQARIVALKSLYEVDLTGHDPDKVIERRL---LFAELGPELETLAQSILAGTLAAR 57

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
              D+++  +  +  + +     + +LR+++ +I++ + V     ++ AVE AK    + 
Sbjct: 58  EEADSLIYRLAPTYPVDQLAPVDRNILRLAIYEIIHDNKVPVRVAINEAVELAKEF-GSD 116

Query: 119 HFAKLVNSILRR 130
             AK +N +L  
Sbjct: 117 GSAKFINGVLSS 128


>gi|222085516|ref|YP_002544046.1| transcription antitermination factor NusB [Agrobacterium
           radiobacter K84]
 gi|254772607|sp|B9JCY3|NUSB_AGRRK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221722964|gb|ACM26120.1| transcription antitermination factor NusB [Agrobacterium
           radiobacter K84]
          Length = 160

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + L      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMDIGGTGVLEVVAEYEAHRLGQELDGDTYLKADASWFRSIVSGVVREQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            R+D ++   L    +L R   +++ +LR    +IL   DV    +V   VE A     +
Sbjct: 78  TRLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILDRKDVPVAVIVTEYVEIAHAFF-D 136

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 137 DDEPKLVNAVLDR 149


>gi|330959944|gb|EGH60204.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 165

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNQA 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            IDA L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDAALTPCLDLTIEELDPIELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 141 HKFVNGVLDK 150


>gi|229592845|ref|YP_002874964.1| transcription antitermination protein NusB [Pseudomonas fluorescens
           SBW25]
 gi|259514879|sp|C3K2R8|NUSB_PSEFS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229364711|emb|CAY52674.1| putative N utilisation-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 166

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR +++  L        SL  +      D+ F      D      I++     L  
Sbjct: 27  KRRAARQLATQALYQRQIAGASLNEIEAQFRVDNDFTF---ADLPYFHDILHGVHAHLTE 83

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           IDA L   L  ++         ++R+S  ++LY  DV    V++  +E AK         
Sbjct: 84  IDAALAPCLDLTIDELDPVELCVMRLSAWELLYRVDVPYRVVINEGIELAKVYGSTDGHK 143


>gi|88801237|ref|ZP_01116776.1| transcription antitermination protein NusB [Reinekea sp. MED297]
 gi|88776023|gb|EAR07259.1| transcription antitermination protein NusB [Reinekea sp. MED297]
          Length = 151

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR ++   L        S+T +      D+    +S+ D+     ++         +
Sbjct: 11  RRKARRLAMQALYQWHVADQSVTQIEAEFLTDN---DVSKFDKDYFSEVLRGVAASKSEL 67

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAK 122
           D+ +D  +  +L         +LR+   + L+ +DV    +++  VE +K    N    +
Sbjct: 68  DSHVDKHIDRALKDLTPVELAILRMGAYEFLHRIDVPYKVIINEGVELSKTFGANE-AHR 126

Query: 123 LVNSILRR 130
            VN +L +
Sbjct: 127 FVNGVLDK 134


>gi|294627702|ref|ZP_06706284.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294667130|ref|ZP_06732355.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292598054|gb|EFF42209.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603140|gb|EFF46566.1| transcription antitermination protein NusB [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 156

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +            ++     + A       D      +V   L     +D  L   L 
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLSNRAELDTALTPYLD 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            S+       + +LR++  ++LY  DV    V++ A+E AKR   + H    VN +L R 
Sbjct: 87  RSVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145

Query: 132 SREK 135
           + E 
Sbjct: 146 AVEW 149


>gi|32034438|ref|ZP_00134620.1| COG0781: Transcription termination factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207689|ref|YP_001052914.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae L20]
 gi|165975657|ref|YP_001651250.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149473|ref|YP_001967998.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307245014|ref|ZP_07527111.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247188|ref|ZP_07529239.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249415|ref|ZP_07531406.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251733|ref|ZP_07533637.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253967|ref|ZP_07535819.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256228|ref|ZP_07538015.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258422|ref|ZP_07540163.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260660|ref|ZP_07542352.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262792|ref|ZP_07544419.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|166215658|sp|A3MYS3|NUSB_ACTP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687518|sp|B0BSK4|NUSB_ACTPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238692374|sp|B3H044|NUSB_ACTP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|126096481|gb|ABN73309.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875758|gb|ABY68806.1| transcription termination factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914604|gb|ACE60856.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306854179|gb|EFM86387.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856326|gb|EFM88478.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858557|gb|EFM90622.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860819|gb|EFM92828.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863171|gb|EFM95113.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865409|gb|EFM97305.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867606|gb|EFM99453.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869737|gb|EFN01522.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871937|gb|EFN03654.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 137

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L      + S+  +   E      + ++  D    R ++  T+ 
Sbjct: 1   MKVSPRRRARECAVQALYSWYVSQNSVEEV---ELSFVTDQDMNGVDLPYFRKLLRGTVL 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
           ++  ID  L   L  +        + +LR+S  ++ Y LDV    V++  +E AK    +
Sbjct: 58  YVEAIDNDLRPFLDRAEDEVDPIERTILRLSAYELKYELDVPYKVVINEGIEVAK-VFGS 116

Query: 118 RHFAKLVNSILRR 130
               K +N IL +
Sbjct: 117 DDSHKYINGILDK 129


>gi|312220561|emb|CBY00502.1| similar to tRNA (cytosine-5-)-methyltransferase ncl1 [Leptosphaeria
           maculans]
          Length = 840

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 44/195 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------------- 266
              Q+  + IP         + VLD+CAAPG K+AQL                       
Sbjct: 156 ISRQEVVSMIPPHFLDVKPGMVVLDMCAAPGSKSAQLAEMIHGDEEERVRRVANGDTVNL 215

Query: 267 ----------------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------- 302
                            A D   +R   L   + RL+     + + DA  +         
Sbjct: 216 TEEGDYSDDGRSTGLLIANDTDYKRAGMLVHQVKRLNFPNLIVTQHDASIFPSIELPSEN 275

Query: 303 ----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                   +D +L D PCS  GT R++P+V       D +     Q ++L +G+  +K G
Sbjct: 276 GQKKQYLKYDRILADVPCSGDGTARKNPNVWQKWTPKDGLGLHNLQLRILFRGLQMLKKG 335

Query: 359 GIVVFSNCSLDKQDS 373
           G +V+S CS++  ++
Sbjct: 336 GRMVYSTCSMNPVEN 350


>gi|149246149|ref|XP_001527544.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447498|gb|EDK41886.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 494

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 92/265 (34%), Gaps = 33/265 (12%)

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQLIVS- 262
              E + +   +  G   +QD ++  P           +  V+D C+APG KT       
Sbjct: 194 HPKEKLSAQEAYKLGEVIIQDRASCFPAHILNQDPNDVHKQVMDACSAPGNKTTHAAAYL 253

Query: 263 ----GAKVTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAV--LV 312
                + V A +   +R+  LR   ++           I   D     P+   D    +V
Sbjct: 254 PQGEDSVVFATERDAKRVAILRTMCEKATGKNRKRLVQITHKDFTTINPEDFPDVTGLIV 313

Query: 313 DAPCSSTGTIRR-------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-VVFS 364
           D  CS +G   R             T D + + K A FQ  ++   +SF  PG   VV+S
Sbjct: 314 DPSCSGSGIFGRAMDENSEESKSDSTIDQERLRKLASFQFVIMKHALSF--PGARKVVYS 371

Query: 365 NCSLDKQDSEEVVQKVLR----SSPIPV-----ELVPLNSAYWKSIDMAMALSPEGWIRI 415
            CS+  +++E VV  +L      +         +++P         +       E   R 
Sbjct: 372 TCSIHAEENERVVIDLLLDEQIRNQGWTLASRDKVIPEWPRRGIESEFVKMSRDEQVCRD 431

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                 + +    G  GFFA    +
Sbjct: 432 LAGGCVRANPKEDGGIGFFAACFVK 456


>gi|300868051|ref|ZP_07112689.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Oscillatoria sp. PCC 6506]
 gi|300333971|emb|CBN57867.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Oscillatoria sp. PCC 6506]
          Length = 315

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 11/230 (4%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPG 253
                  +    +            G ++  D S+     L    +     +LD+CAAPG
Sbjct: 57  TTWQPEFVDRLAINTKPGKHQLHESGHYYCLDFSSIFAASLLLTISQPIKLILDMCAAPG 116

Query: 254 GKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA-- 309
           GK+           + + +V  +R+  L  NL R  +    +   D+          A  
Sbjct: 117 GKSIFAWKILHPELLISNEVIGKRIGMLISNLKRCQISQSVVTSADSEKLAEIIPQTANL 176

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           V+VDAPC+    + +            I  +A  Q+++L      V P G + +  C+  
Sbjct: 177 VIVDAPCTGQSLLAKGEKAPGCFHPVTINSNANRQKRILANSAKIVAPQGYLAYMTCTYS 236

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
             ++E+V +  +   P                     L+     R+ P  
Sbjct: 237 PAENEQVTEWFIAKFPQF-----QPVEVPDLAAHQSHLTTLHCYRMWPQD 281


>gi|307326792|ref|ZP_07605984.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113]
 gi|306887555|gb|EFN18549.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113]
          Length = 150

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 3/149 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  ++  +L      +               +V    + +
Sbjct: 1   MAARNKARKRAFQILFEADQRGATVQIVLADWIRLARTDDRQPPVSEYTMQLVEGYAQHI 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +  +L R     + +LR+   ++++ D   D  V+D AV+ AK    + 
Sbjct: 61  DRIDELIATYAVGWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAKEFSTDD 120

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISI 147
             A  VN +L R+   K  L +       
Sbjct: 121 SPA-FVNGLLGRIKELKPTLRRDQEHPEH 148


>gi|300114881|ref|YP_003761456.1| NusB antitermination factor [Nitrosococcus watsonii C-113]
 gi|299540818|gb|ADJ29135.1| NusB antitermination factor [Nitrosococcus watsonii C-113]
          Length = 148

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 1   MKSGM-NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +    AR  +   L         +  +          + +   D    +A++    + 
Sbjct: 1   MSNRRSKARTAALQGLYQWQLTGQDVDKIDIEFIV----QDIRGIDHAYFQALLQGVPQR 56

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              +D  L   L   +         +LR+   ++L   ++    V++ A+E AKR     
Sbjct: 57  QWELDECLGPFLDRPIHEIDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRF-GAE 115

Query: 119 HFAKLVNSILRR 130
           H  + VN IL +
Sbjct: 116 HGHRYVNGILDK 127


>gi|295695401|ref|YP_003588639.1| NusB antitermination factor [Bacillus tusciae DSM 2912]
 gi|295411003|gb|ADG05495.1| NusB antitermination factor [Bacillus tusciae DSM 2912]
          Length = 148

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYG----DSAFRLLSQRDQILVRAIVNVTLR 58
           S   AR      L  V          L+  +     + A    S  D    R ++  TL 
Sbjct: 2   SRRAAREKVLQALVAVDLGGTDAEEALEQVWRLRGDEEAEGDPSPEDADFARGLLFGTLE 61

Query: 59  FLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
              R+D VL        L R     + +LR++V ++L++       V++ AVE AKR   
Sbjct: 62  EGRRVDGVLRTYSTGWDLDRMASVDRNVLRLAVYELLHVPATPVSVVMNEAVELAKRY-S 120

Query: 117 NRHFAKLVNSILRRVSRE 134
                + VN +L R+   
Sbjct: 121 TEESGRFVNGVLARIVAH 138


>gi|238879678|gb|EEQ43316.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 492

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 141/435 (32%), Gaps = 61/435 (14%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + A+V  TL++   ID +    +  S  +    ++++          +      ++   +
Sbjct: 68  IFALVYSTLKYKEYIDVI----VKKSKIQHDLQIKKV---------KMSNELLCLLVHDL 114

Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
             + + +       + ++ L   +R + E  +             ++L      +    I
Sbjct: 115 LFSSKGRIQSGKHPMKDAFLSNKTRLQAEFTKL---KLKYKVKSVDQLPTKEADDDETPI 171

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--------------RLKELPESIVS 214
               I+ + ID+   +    +  +L  V                           E I S
Sbjct: 172 RWFRINTIKIDIDRFYTKHPFFKQLQPVSSIDEITETGIIYSDDYIPNLFGVHPREKITS 231

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLIVS----GAKVT 267
              +  G   +QD ++  P  +        +  V+D CAAPG KT           + V 
Sbjct: 232 TEAYRLGEIIIQDRASCFPSHILNADPEDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVY 291

Query: 268 ALDVSKRRLEKLRCNLDR----LHLYAEDIIEMDAFDYCPKKLFDAV--LVDAPCSSTGT 321
           A +   +R++ L+   ++           +   D     P+   D    +VD  CS +G 
Sbjct: 292 AFERDSKRVKILKTMCEKATGKTKKKLIQVTHADFTTTKPEDFPDVTGLVVDPSCSGSGI 351

Query: 322 IRRHPDVLWTRDTDDI------VKSACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSE 374
             R  +     +  +        K A FQ  ++   +SF  P    VV+S CS+  Q++E
Sbjct: 352 FGRALEDSHNEEEIENVNTERLNKLAGFQFAIMKHALSF--PSARKVVYSTCSIHAQENE 409

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---------TPDMLEKIDG 425
            VV  +L    +      L                E +I+I               + + 
Sbjct: 410 RVVVDLLSDPEVNRRGWKLADREIVLPKWDRRGFEEEFIKISRDPKECARLAGGCVRANP 469

Query: 426 VSSGMDGFFAVALRR 440
              G  GFFA    R
Sbjct: 470 KEDGGIGFFAACFVR 484


>gi|319786237|ref|YP_004145712.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1]
 gi|317464749|gb|ADV26481.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1]
          Length = 156

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              +        +   ++     + A  +    D      +V   L     +D  L   L
Sbjct: 24  LQAIYAWQISGGNAQQVIAQFAHEQAHEI---ADLTYFEDLVTGVLSHRASLDEALAPHL 80

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             ++       + +LR++  ++L+  DV    V++ A+E AKR   + H    VN +L R
Sbjct: 81  DRAVEEVDAIERAVLRLAAYELLHRVDVPYRVVINEAIEIAKRF-GSEHGHTYVNGVLDR 139

Query: 131 VSREKIE 137
            S +  +
Sbjct: 140 ASAQWRQ 146


>gi|302517963|ref|ZP_07270305.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
 gi|302426858|gb|EFK98673.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
          Length = 144

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      S               +V       
Sbjct: 1   MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRNDTQQPPVSEYTMELVEGYAEHA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID V+        L R     + ++R+   +++++D   D  V+D AVE AK    + 
Sbjct: 61  RRIDEVIAKYSVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAKEFSTDD 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|327271095|ref|XP_003220323.1| PREDICTED: putative methyltransferase NSUN4-like [Anolis
           carolinensis]
          Length = 399

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 22/234 (9%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLR 280
           +++ DA++ +PV       +  VLDLCAAPGGKT  L+ +G    + A D+S  R  +L 
Sbjct: 172 YYLLDAASILPVLALNIQPDDLVLDLCAAPGGKTLALLQTGCCRGLAANDLSTSRTRRLN 231

Query: 281 CNLDRL------HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332
             L R        +      +   +       FD VLVD PC++          ++    
Sbjct: 232 DILHRYLPQELQKVVRVTSWDGRKWGELETSTFDRVLVDVPCTNDRHSLREEDNNIFMRM 291

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPV 388
              +       Q +LL+ GI   KPGG VV+S CSL +  +E V+++ +        I V
Sbjct: 292 RKGERQNLPRLQLELLVAGILAAKPGGEVVYSTCSLSQLQNEYVIERAVELMAIQYQIEV 351

Query: 389 ELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           ++  L+          +          I P +              +   LRR+
Sbjct: 352 QVEDLSYFRKLFQSTFSFYPDCRLGELILPHLTANFGP-------MYFCKLRRM 398


>gi|58583474|ref|YP_202490.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625287|ref|YP_452659.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188575269|ref|YP_001912198.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|75434146|sp|Q5GW16|NUSB_XANOR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390848|sp|Q2NZ92|NUSB_XANOM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689535|sp|B2SNW5|NUSB_XANOP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|58428068|gb|AAW77105.1| transcription termination factor NusB [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369227|dbj|BAE70385.1| N utilization substance protein B homolog [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188519721|gb|ACD57666.1| transcription antitermination factor NusB [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 156

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +            ++     + A       D      +V   L     +D  L   L 
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLTNRAELDTALTPYLD 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             +       + +LR++  ++LY  DV    V++ A+E AKR   + H    VN +L R 
Sbjct: 87  RGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145

Query: 132 SREK 135
           + E 
Sbjct: 146 AVEW 149


>gi|325918406|ref|ZP_08180534.1| transcription antitermination factor NusB [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535368|gb|EGD07236.1| transcription antitermination factor NusB [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 156

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +            ++     + A       D     ++V   L     +D  L   L 
Sbjct: 30  QAVYAWQISGGFAKQVIGQFAHEQAH---EVADLAYFESLVEGVLTHRAELDTALTPYLD 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             +       + +LR++  ++LY  DV    V++ A+E AKR   + H    VN +L R 
Sbjct: 87  RGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145

Query: 132 SREK 135
           + E 
Sbjct: 146 AVEW 149


>gi|167470223|ref|ZP_02334927.1| transcription antitermination factor NusB [Yersinia pestis FV-1]
          Length = 137

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +   L      +     + D+E    + + +   D    R +++        +DA
Sbjct: 7   PARECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDA 63

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++   L   L       + +LR+++ ++    DV     ++ A+E AK         K V
Sbjct: 64  LMAPFLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFV 122

Query: 125 NSILRR 130
           N +L +
Sbjct: 123 NGVLDK 128


>gi|219847234|ref|YP_002461667.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
 gi|254772623|sp|B8G2S7|NUSB_CHLAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219541493|gb|ACL23231.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
          Length = 150

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R+ +  +L  V     ++  +L+    D     +S      +R +V  T      +
Sbjct: 10  RHRVRIAALQILFEVDETDHAIDQVLERRLTDEP---MSAESAEFLRRLVFGTWEHRSYL 66

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDV---ADYAVVDLAVEQAKRDKENRH 119
           D +++       + +     + +LR+++ ++L  +V      AV++ AVE AK    + +
Sbjct: 67  DRIIEEAAPNWPVNQMPGVDKAVLRIALFELLIDEVEKTPIKAVINEAVELAKEF-GSDN 125

Query: 120 FAKLVNSILRRVSREK 135
            ++ VN +L  V    
Sbjct: 126 SSRFVNGVLGTVVTRY 141


>gi|240949529|ref|ZP_04753869.1| transcription antitermination protein NusB [Actinobacillus minor
           NM305]
 gi|257464994|ref|ZP_05629365.1| transcription antitermination protein NusB [Actinobacillus minor
           202]
 gi|240296102|gb|EER46763.1| transcription antitermination protein NusB [Actinobacillus minor
           NM305]
 gi|257450654|gb|EEV24697.1| transcription antitermination protein NusB [Actinobacillus minor
           202]
          Length = 144

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLL----DLEYGDSAFRLLSQRDQILVRAIVN 54
           MK      AR  +   L      + S+  +        +         + D+ L   I  
Sbjct: 1   MKLTPRRRARECAVQALYSWAISQNSVEEIELVFHTDTFAAEDPDTEGKIDKALFTRIFR 60

Query: 55  VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
            T+  +  ID  L   L  +        + +LR++  ++ +  D     +++ A+E AK 
Sbjct: 61  GTVASIDEIDRSLQPFLDRNPENVDLIERSILRMAAFELHFEQDTPYKVIINEAIEVAKA 120

Query: 114 DKENRHFAKLVNSILRR 130
              +    K +N +L +
Sbjct: 121 F-GSDDSHKYINGVLDK 136


>gi|330830919|ref|YP_004393871.1| N utilization substance protein B [Aeromonas veronii B565]
 gi|328806055|gb|AEB51254.1| N utilization substance protein B [Aeromonas veronii B565]
          Length = 137

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  ++  +      + ++  + +    D   + +   D    R ++     
Sbjct: 1   MKPSERRKARHCATQAIYQWQMTKANVGDIEEQFKIDQDTKGV---DLNYFRDLLFGVAL 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               +D V    L   L       + +LR++  ++    DV    V++ A+E AK    +
Sbjct: 58  HCSELDKVFAPFLSRPLEEVDMVDKAILRLATYELTRRDDVPPRVVINEAIELAKAFAAD 117

Query: 118 RHFA 121
               
Sbjct: 118 DSHK 121


>gi|332298537|ref|YP_004440459.1| Fmu (Sun) domain protein [Treponema brennaborense DSM 12168]
 gi|332181640|gb|AEE17328.1| Fmu (Sun) domain protein [Treponema brennaborense DSM 12168]
          Length = 286

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 91/236 (38%), Gaps = 21/236 (8%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRR 275
              + +  D  +              +LD+CAAPGGK    + L+   A++ + + S  R
Sbjct: 50  DAYLAYFLDRGSIKAALSLPLGGAERILDMCAAPGGKTLVVSSLMDGTAELVSNERSHER 109

Query: 276 LEKLRCNLDRLHLYAED----IIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           + +L    D     +      +   D         + +D +L+DAPCSS   +   P  L
Sbjct: 110 MMRLSRVADEHLPPSVRARVRVTCGDGARLCLSRTECYDRILLDAPCSSERHVLSSPQYL 169

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI--- 386
                  +   +  Q  LL      ++PGG ++++ C+L   +++EVV ++ +       
Sbjct: 170 CEWSPARVKTLSVTQWALLSSAFRLLRPGGYLLYATCALSPAENDEVVARLEKKFSGVQF 229

Query: 387 --PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +  VP++++ +    +         + + PD       +       +   +R+
Sbjct: 230 VRNLPPVPVSASSFFDGALPDGEPTAFGVHVLPDSCGGAGPL-------YFSLIRK 278


>gi|293352128|ref|XP_002727930.1| PREDICTED: NOL1/NOP2/Sun domain family member 3 [Rattus norvegicus]
          Length = 349

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 18/229 (7%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCN 282
           +++ +A++ +PV      +   VLDLCAAPGGK+  L+      T   V    + +   +
Sbjct: 113 YYLLNAASLLPVLALEVKDGEPVLDLCAAPGGKSIALLQCAYPGTVCSVLTHIVPRFSVS 172

Query: 283 LDRL---------HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI-RRHPDVLWTR 332
                              +      +         VLVDAPCS+  +          T 
Sbjct: 173 DTWKADEKRCENEGAGLGILSNRRTAEDDDWLWNSKVLVDAPCSNDRSWLFSSDSQKATY 232

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                      Q  LL   I  ++PGG++++S C+L K ++++V+ ++L S    V +  
Sbjct: 233 RXCQRNNLPALQVGLLRSAIKALRPGGLLIYSTCTLSKAENQDVISEILTSDSNIVPMDI 292

Query: 393 LNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440
              A   S D   A + +   + + P+  +            +   L++
Sbjct: 293 SGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGP-------MYIAKLKK 334


>gi|260913902|ref|ZP_05920376.1| transcription termination/antitermination factor NusB [Pasteurella
           dagmatis ATCC 43325]
 gi|260631989|gb|EEX50166.1| transcription termination/antitermination factor NusB [Pasteurella
           dagmatis ATCC 43325]
          Length = 144

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      + S   +   E    A + L   D    R +   T+  + 
Sbjct: 11  SPRRRARECAVQALYSWYVSQNSPAEI---ELEFVAEQDLKGVDVPYFRKLFRQTVENVE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D ++   L   +       + +LR++V ++ + LDV    V++ A+E  K        
Sbjct: 68  TVDVIMAPYLDRDVNEVDPIEKAILRLAVYELKFELDVPYKVVINEAIEVTK-VFGADDS 126

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 127 HKYVNGVLDK 136


>gi|295689070|ref|YP_003592763.1| Nusb antitermination factor [Caulobacter segnis ATCC 21756]
 gi|295430973|gb|ADG10145.1| NusB antitermination factor [Caulobacter segnis ATCC 21756]
          Length = 149

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 9/136 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVT 56
           +    ARL +   L  +      +  ++                L+  D+     +    
Sbjct: 7   QPRSVARLAAIQALYQMEVSGAGVDSVIREFSEHRFDRDVEGERLAAADETFFAELAKGV 66

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
           +    ++D  +   L     L R   + + +LR    +++Y  DV    V++  VE AK 
Sbjct: 67  VAHQAKVDQGIVKRLASGWRLERLDATARAVLRAGAYELMYRPDVPTEVVINEYVEIAKS 126

Query: 114 DKENRHFAKLVNSILR 129
             E    A  +N  L 
Sbjct: 127 FFEGPE-AGFINGALD 141


>gi|255718407|ref|XP_002555484.1| KLTH0G10362p [Lachancea thermotolerans]
 gi|238936868|emb|CAR25047.1| KLTH0G10362p [Lachancea thermotolerans]
          Length = 529

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 138/443 (31%), Gaps = 58/443 (13%)

Query: 49  VRAIVNVTLRFLPRIDAVLDF--VLISSLPRKKYSLQQ--LLRVSVAQILYLDVADYAVV 104
           + A V    R+   +D +L    +L     +K   +     +++ V  +L+       + 
Sbjct: 93  IYAAVYSCWRYNEFLDKLLKRSGILKDIPKKKGKEVFNPTTIKLLVHDLLFSKNKRIQMG 152

Query: 105 DLA-VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
                E   + K     +  +  +  ++    ++ L +     + P     RL       
Sbjct: 153 KHPLKEFVLKYK--ARLSSELVRLKIKLKVTDLQQLLKDDRNDMTPV-RWFRLNPIRCGA 209

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
           +   I           +    +I   A           G+      + I S   +  G  
Sbjct: 210 KSEDILQELSKKFPTRVNSWTNI---APGCIYHDEYIPGLFGVHPADKITSHELYKTGKV 266

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------KVTALDVSKRR 275
            +QD ++  P  +    +   ++D CAAPG KT  +             ++ A +    R
Sbjct: 267 IIQDRASCFPAHILNASSEDLIIDACAAPGNKTTHVAAHIFQDQAVESVRIHAFEKDPER 326

Query: 276 LEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFD---AVLVDAPCSSTGTIRRHPDVLWT 331
            + LR  ++        ++   D         F      ++D  CS +G   R       
Sbjct: 327 AKTLRTMINTAGCTKGIEVHVGDFTQLAKPGKFPDVTGFILDPSCSGSGIFGRKMIDDRN 386

Query: 332 RDTDDI-------------------------VKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +   D                           K A FQ +++   +SF      +V+S C
Sbjct: 387 KSKADGASPVEEEEKEEEREDISDKDLKNRLEKLASFQFEIVKHAMSF-PSAKKLVYSTC 445

Query: 367 SLDKQDSEEVVQKVLRSSPIP---------VELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           S+  +++E +V  +L  S +            ++P  S      +       E   +   
Sbjct: 446 SVHAEENERIVVDLLLDSKVKEWGWRVRKRAGVIPTWSRRGFYKEFEEVFRDEDTAKELA 505

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
           +   ++     G  GFFAV   R
Sbjct: 506 EACIRVAPKEDGGIGFFAVCFER 528


>gi|303239904|ref|ZP_07326427.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2]
 gi|302592614|gb|EFL62339.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2]
          Length = 141

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR ++  L+  +  ++ S    +           +++ D   +  +V    + L +I
Sbjct: 3   RRAAREIAMKLVYQLEIQKDSREEQIRQTLE---QENVTENDTNYITDVVEGVFKNLEQI 59

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D  ++       L R       +LR+S+ +I +  D+     V+ AVE AK        +
Sbjct: 60  DKTIEMYSKGWKLSRISKVDLSILRLSIYEISFRNDIPFNVSVNEAVELAKNYSGEESSS 119


>gi|56696640|ref|YP_167001.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3]
 gi|56678377|gb|AAV95043.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3]
          Length = 160

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   ARL +   L  +     ++  ++                L++ D  L RA+V  
Sbjct: 16  MKS--AARLYAVQALFQMEHSGQTVESVVSEFLEHRFGAVYEGDELAEGDAALFRALVGD 73

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +     ID + D  L     + R   +L+ L R + A+    D     V+   V+ A+ 
Sbjct: 74  AVNNQALIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFSQNDTPPKVVITEFVDIARA 133

Query: 114 DKENRHFAKLVNSILRRV 131
                     VN++L  +
Sbjct: 134 FFPEGRETSFVNAVLDHM 151


>gi|91784900|ref|YP_560106.1| transcription antitermination protein NusB [Burkholderia xenovorans
           LB400]
 gi|119372284|sp|Q13V35|NUSB_BURXL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91688854|gb|ABE32054.1| NusB antitermination factor [Burkholderia xenovorans LB400]
          Length = 144

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   F    + D   + A+++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAVLHGVIRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A +   L   + +     + +L V+  ++  +LD+    V++ AVE AK      
Sbjct: 58  SEALSAAIAPCLDRPIEQLSPVERAVLLVAAFELKNHLDIPYRVVINEAVELAKTFGGAD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|119606598|gb|EAW86192.1| NOL1/NOP2/Sun domain family, member 6, isoform CRA_b [Homo sapiens]
          Length = 141

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 20/138 (14%)

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           + + P++  T    ++      QRKL    +  +KP G++V+S C++   ++EE V   L
Sbjct: 1   MGQRPNMACTWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWAL 60

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD---------- 431
              P  ++L P              LS E   ++       +    + MD          
Sbjct: 61  TKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLREARREDM 119

Query: 432 ---------GFFAVALRR 440
                    GFF     +
Sbjct: 120 LRLANKDSIGFFIAKFVK 137


>gi|117620704|ref|YP_857817.1| transcription antitermination factor NusB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|254772605|sp|A0KNG6|NUSB_AERHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|117562111|gb|ABK39059.1| transcription antitermination factor NusB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 137

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  ++  +      + ++  + +    D   + +   D    R ++     
Sbjct: 1   MKPSERRKARHCATQAIYQWQMTKANVGDIEEQFKIDQDTKGV---DLNYFRDLLFGVAL 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               +D V    L   L       + +LR++  ++    DV     ++ A+E AK    +
Sbjct: 58  HCNELDKVFAPFLSRPLEEVDMVDKAILRLATYELTRRDDVPPRVAINEAIELAKSFAAD 117

Query: 118 RHFA 121
               
Sbjct: 118 DSHK 121


>gi|88856244|ref|ZP_01130904.1| transcription termination factor [marine actinobacterium PHSC20C1]
 gi|88814563|gb|EAR24425.1| transcription termination factor [marine actinobacterium PHSC20C1]
          Length = 137

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  L+     +  S+   L  E   +             + +V       
Sbjct: 1   MGARSKARKRALDLMYGADVRGESINEALATESSRALSDPARATSWAYAQQVVVGITEHG 60

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             ID +++       L R     + LLR+++ +ILY D V     +  AVE AK      
Sbjct: 61  DEIDELIETYSQGWPLNRMPAVDRALLRIALWEILYNDEVPAGVAISEAVESAKVH-STE 119

Query: 119 HFAKLVNSILRR 130
             A  +N +L R
Sbjct: 120 DSAGFINGLLGR 131


>gi|225174889|ref|ZP_03728886.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
 gi|225169529|gb|EEG78326.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
          Length = 138

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR ++   L      +     +            L        R +V  TL+ L
Sbjct: 1   MSRRL-AREIAFKTLFQYDIGK---NEVEPTISQLIEENGLEGAGVEFSRQLVLGTLKNL 56

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID  L   L    L R     + +LR++  +ILY  D+     ++ A+E +K      
Sbjct: 57  EAIDKALAGYLQKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSKAFHSEE 116

Query: 119 HFAKLVNSILRRVSREK 135
             AK +N +L +++R  
Sbjct: 117 -AAKFLNGVLDKLARHH 132


>gi|20807741|ref|NP_622912.1| transcription antitermination protein NusB [Thermoanaerobacter
           tengcongensis MB4]
 gi|22095940|sp|Q8RAD1|NUSB_THETN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|20516294|gb|AAM24516.1| Transcription termination factor [Thermoanaerobacter tengcongensis
           MB4]
          Length = 140

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR     +L      ++ L  + +  Y +          +  +   V  T+  L  
Sbjct: 2   NRTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHD----PGEQKEYIEGTVRGTVEHLEE 57

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           ID  ++       L R       +LR S+ ++LY ++     ++ AVE AK+   +   +
Sbjct: 58  IDREIEKYSKDWPLYRMPRIDLAILRCSMYEMLYGNIPVSISINEAVEIAKKYSTDDSPS 117


>gi|295677368|ref|YP_003605892.1| NusB antitermination factor [Burkholderia sp. CCGE1002]
 gi|295437211|gb|ADG16381.1| NusB antitermination factor [Burkholderia sp. CCGE1002]
          Length = 144

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   +    + D   + AI++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGY---DKADHEHLDAILHGVMRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A +   L   + +     + +L V+  ++  ++D+    V++ AVE  K    + 
Sbjct: 58  SEELSAAIAPCLDRPIDQLSPVERAVLLVAAFELKNHVDIPYRVVINEAVELTKTFGGSD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|213861750|ref|ZP_03386220.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 125

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%)

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414
           ++PGG +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ 
Sbjct: 4   LRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLH 60

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + P + +          GFF   LR++
Sbjct: 61  VFPQIYDCE--------GFFVARLRKM 79


>gi|222526903|ref|YP_002571374.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
 gi|254772624|sp|B9LDT2|NUSB_CHLSY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222450782|gb|ACM55048.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
          Length = 151

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R+ +  +L  V     ++  +L+    D      S      +R +V         +
Sbjct: 10  RHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAE---FLRRLVFGAWEHRSYL 66

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDV---ADYAVVDLAVEQAKRDKENRH 119
           D +++       + +     + +LR+++ ++L  DV      AV++ AVE AK+   + +
Sbjct: 67  DRIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQF-GSDN 125

Query: 120 FAKLVNSILRRVSREK 135
            ++ VN +L  V    
Sbjct: 126 SSRFVNGVLGTVVTRY 141


>gi|152998045|ref|YP_001342880.1| NusB antitermination factor [Marinomonas sp. MWYL1]
 gi|226738905|sp|A6W2L6|NUSB_MARMS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150838969|gb|ABR72945.1| NusB antitermination factor [Marinomonas sp. MWYL1]
          Length = 174

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              +R ++   +      + +++  ++ ++     R +   D++  R ++        ++
Sbjct: 27  RSASRRLALQAVYQWQMNKTAVSE-IETQFVIDQDRDMDSCDKVYFRELLQGVTASAKKL 85

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           D + + +L   L         ++R+   ++   LDV     ++ +VE AK         K
Sbjct: 86  DTLFEELLDRPLSELDPIELAVMRIGSYELSQRLDVPYRVAINESVELAKGFGATES-HK 144

Query: 123 LVNSILRR 130
            VN IL +
Sbjct: 145 YVNGILDK 152


>gi|269127152|ref|YP_003300522.1| NusB antitermination factor [Thermomonospora curvata DSM 43183]
 gi|268312110|gb|ACY98484.1| NusB antitermination factor [Thermomonospora curvata DSM 43183]
          Length = 138

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR ++  +L     +    T +L      +    +S R+      ++       
Sbjct: 1   MAARTKARKLALDILYAAEMRGERPTDVLAQRGRPNT-DEISAREHA--VRLIEGVQEHR 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID +L       +L R     + LLR+   ++L+  DV D   +  AV  A       
Sbjct: 58  ERIDELLATYATGWTLDRMPAVDRNLLRLGAYELLWVDDVPDGVAIAEAVALATE-LSTD 116

Query: 119 HFAKLVNSILRR 130
              + VN +L R
Sbjct: 117 ESPRFVNGLLSR 128


>gi|89093481|ref|ZP_01166429.1| NusB protein [Oceanospirillum sp. MED92]
 gi|89082171|gb|EAR61395.1| NusB protein [Oceanospirillum sp. MED92]
          Length = 159

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             NAR  +   L         L  L      D+  R     D  L   +++        +
Sbjct: 20  RRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMR---DTDIRLFSELLHSIAGGKSEL 76

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           D +    L  ++         +LR+   ++    +V     ++ +VE AK         K
Sbjct: 77  DQLYTDFLDRNVDELDPIELNVLRIGAYELSKRFEVPYRVAINESVELAKTFGATDS-HK 135

Query: 123 LVNSILRR 130
            VN +L +
Sbjct: 136 YVNGVLDK 143


>gi|23099336|ref|NP_692802.1| transcription antitermination protein NusB [Oceanobacillus
           iheyensis HTE831]
 gi|32171652|sp|Q8EQ42|NUSB_OCEIH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|22777565|dbj|BAC13837.1| transcriptional terminator [Oceanobacillus iheyensis HTE831]
          Length = 126

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 10/130 (7%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR  +  +L  +      L  +++       + +        +R++V   ++    
Sbjct: 2   NRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDV-------FLRSLVEGVIQHKSV 54

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID  +   L   ++ R     + +LR+++ +I+Y  D+     ++ A+E A     +   
Sbjct: 55  IDEKISTHLEKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELAHTF-GDEQS 113

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 114 GKFVNGVLSK 123


>gi|77361286|ref|YP_340861.1| transcription termination factor [Pseudoalteromonas haloplanktis
           TAC125]
 gi|119390799|sp|Q3II29|NUSB_PSEHT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|76876197|emb|CAI87419.1| transcription termination factor [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 136

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR+++   +        ++  +      ++    +   D    + + +    
Sbjct: 1   MKPAARRKARILALQAIYSWQLSGNAIADIEQQMLIENDVTKI---DVEYFKDLASGVAV 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ++D  +   L           + +LR+S  ++ +  DV     ++ ++E AK     
Sbjct: 58  NYKQLDEAVSPHLTRPFDELDMVERAILRLSSYELKFREDVPYKVAINESIELAK-MFGA 116

Query: 118 RHFAKLVNSILRRVSRE 134
               K VN +L +  + 
Sbjct: 117 EDSHKFVNGVLDKAVKH 133


>gi|40714555|gb|AAR88536.1| RH33950p [Drosophila melanogaster]
          Length = 450

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 24/229 (10%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++        +LD+CAAPG KT+ +   +     V ALD S  R+  +   
Sbjct: 212 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 271

Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           L         +                        P + FD +L+DAPCS  G   R   
Sbjct: 272 LGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 329

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
               +    +      QR+L  Q +  V+PGGI+V+S C++ + + E +V   LR   + 
Sbjct: 330 SCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKF-VE 388

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           + L       W    + +        R+         G ++   GFF  
Sbjct: 389 LRLTDATPR-WGGPGLPLPGFEACKSRLL--QRFGPSGANADTVGFFYC 434


>gi|302392489|ref|YP_003828309.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
 gi|302204566|gb|ADL13244.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
          Length = 138

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR ++   L  +      L   L++         L       +  I+  T + L  
Sbjct: 6   SRHEARKIAVQTLYQIDINDEGLEKNLEMLTNRIEGLELED---TFLEEIITGTYQNLSE 62

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID  L+       + R     + +LR+++ +ILY  D+     +D AVE AK    ++  
Sbjct: 63  IDKELNESAEGWKVSRMGKVDRNILRLAIYEILYVDDIPIEVSIDEAVELAKEFIADKS- 121

Query: 121 AKLVNSILRR 130
            K +N +L R
Sbjct: 122 PKFINGVLGR 131


>gi|289663670|ref|ZP_06485251.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289671050|ref|ZP_06492125.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 156

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +            ++     + A       D      +V   L     +D  L   L 
Sbjct: 30  QAVYAWQISGGFAKQVIGQFAHEQAH---EVADLAYFENLVEGVLSNRAELDTALTPYLD 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             +       + +LR++  ++LY  DV    V++ A+E AKR   + H    VN +L R 
Sbjct: 87  RGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145

Query: 132 SREK 135
           + E 
Sbjct: 146 AVEW 149


>gi|145633871|ref|ZP_01789592.1| sun protein [Haemophilus influenzae 3655]
 gi|144985243|gb|EDJ92086.1| sun protein [Haemophilus influenzae 3655]
          Length = 166

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 8/154 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + ++ R ++++L+  V+ +  SL+ L+           +  +D  L++ I     R LPR
Sbjct: 18  TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
           ++ ++  ++   L  K   +  LL V + Q+LY+ V  +A VD  V  A +  ++  F  
Sbjct: 73  LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131

Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKE 154
           LVN++LRR  RE+ E+  +      ++ PEWF  
Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVN 165


>gi|332799350|ref|YP_004460849.1| NusB antitermination factor [Tepidanaerobacter sp. Re1]
 gi|332697085|gb|AEE91542.1| NusB antitermination factor [Tepidanaerobacter sp. Re1]
          Length = 135

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR  +  +L  +     ++    ++           +  +  +   V   L+ L
Sbjct: 1   MSRKI-AREQAFKILFAIDVGNNTVEEASEIVIEFLK----DENQKSFILNEVRGVLKNL 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID +++      S+ R   + + +LR++V +++Y  D+     ++ AVE AK+   + 
Sbjct: 56  SNIDIIINKYSDDWSIDRMAATDRNILRLAVYELIYSQDIPISVSINEAVEIAKKY-GDE 114

Query: 119 HFAKLVNSILRRVSREK 135
           H  K +N +L  ++ + 
Sbjct: 115 HSYKFINGLLGSIAEDH 131


>gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109]
 gi|296021500|gb|ADG74736.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109]
          Length = 138

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ + +  LL     +        +       +V   L   
Sbjct: 1   MGARTKARKRALDVLFEAEQRGLDVAELLAKRVVEPGTEASLPQ---YAVELVEGVLEHA 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID +L       ++ R     + LLR+   +IL+  DV D   VD AV  A+    + 
Sbjct: 58  ERIDELLATHSHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAVSLARELSTDE 117

Query: 119 HFA 121
             A
Sbjct: 118 SPA 120


>gi|327439755|dbj|BAK16120.1| transcription termination factor [Solibacillus silvestris StLB046]
          Length = 128

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +++   +     +             +  +V  T   +
Sbjct: 1   MK-RTEARQKALQALFQLDSTELTIEEAIGHVLEEEQKSN------AFLEQLVRGTTENI 53

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             IDA L+  L   ++ R     + +LR++V ++LY  +  +  +++ A+E +K    + 
Sbjct: 54  EAIDAALEKNLEKWTINRLPKIERTILRLAVYELLYAEETPNKVIMNEAIELSKTF-GDE 112

Query: 119 HFAKLVNSILRRVSRE 134
             +K VN +L + + +
Sbjct: 113 KSSKFVNGVLSKFTEQ 128


>gi|66047685|ref|YP_237526.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae B728a]
 gi|75500475|sp|Q4ZMY4|NUSB_PSEU2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|63258392|gb|AAY39488.1| Antitermination protein NusB [Pseudomonas syringae pv. syringae
           B728a]
          Length = 165

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNQT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALKPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 141 HKFVNGVLDK 150


>gi|187925077|ref|YP_001896719.1| transcription antitermination protein NusB [Burkholderia
           phytofirmans PsJN]
 gi|238689481|sp|B2T6D1|NUSB_BURPP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187716271|gb|ACD17495.1| NusB antitermination factor [Burkholderia phytofirmans PsJN]
          Length = 144

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   F    + D   + AI++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAILHGVIRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A +   L   + +     + +L V+  ++  ++D+    V++ AVE AK      
Sbjct: 58  SEALSAAIAPCLDRPIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAVELAKTFGGAD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|169828975|ref|YP_001699133.1| N utilization substance protein B-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|238688177|sp|B1HRY0|NUSB_LYSSC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168993463|gb|ACA41003.1| N utilization substance protein B-like protein (NusB-like protein)
           [Lysinibacillus sphaericus C3-41]
          Length = 127

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 12/136 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +  +L  +    +++   +    G                 IV  T   L
Sbjct: 1   MK-RHEAREKALQVLFQLDNTDLTVEEAMGHIKGQPTNV--------FYEKIVTGTAEHL 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             IDA L+  L   SL R     + +LR++V ++LY+ +     V++ A+E  K    + 
Sbjct: 52  EEIDATLEQHLEKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELCKTF-GDD 110

Query: 119 HFAKLVNSILRRVSRE 134
             +K VN +L + + +
Sbjct: 111 SSSKFVNGVLSKFTEQ 126


>gi|145298021|ref|YP_001140862.1| antitermination protein NusB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|254772606|sp|A4SJP2|NUSB_AERS4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|142850793|gb|ABO89114.1| Antitermination protein NusB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 137

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  ++  +      R ++  + +    D   + +   D    R ++     
Sbjct: 1   MKPSERRKARHCATQAIYQWQMTRANVGDIEEQFKIDQDTKGV---DLNYFRDLLFGVAL 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               +D V    L   L       + +LR++  ++    DV    V++ A+E AK    +
Sbjct: 58  HCNELDKVFAPFLSRPLEEVDMVDKAILRLATYELTRRDDVPPRVVINEAIELAKAFAAD 117

Query: 118 RHFA 121
               
Sbjct: 118 DSHK 121


>gi|108757895|ref|YP_632923.1| transcription antitermination factor NusB [Myxococcus xanthus DK
           1622]
 gi|119390787|sp|Q1D350|NUSB_MYXXD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108461775|gb|ABF86960.1| transcription antitermination factor NusB [Myxococcus xanthus DK
           1622]
          Length = 140

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 4/133 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRF 59
           M +    R  +   L  +     +    L+  +  +        D     R +V      
Sbjct: 1   MGARRTGRERALQALYQLEMATATTAEALESAWSAAEESNKRDPDAVKFARELVEGVQSH 60

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID +++    +  L R     + +LR+ + ++ Y  D+     ++ AVE  K +  N
Sbjct: 61  RDEIDQLIERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGK-NFGN 119

Query: 118 RHFAKLVNSILRR 130
              +  VN +L R
Sbjct: 120 EESSAFVNGLLDR 132


>gi|21219991|ref|NP_625770.1| transcription antitermination protein NusB [Streptomyces coelicolor
           A3(2)]
 gi|256788910|ref|ZP_05527341.1| transcription antitermination protein NusB [Streptomyces lividans
           TK24]
 gi|289772797|ref|ZP_06532175.1| transcription antitermination factor NusB [Streptomyces lividans
           TK24]
 gi|22095971|sp|Q9KXR0|NUSB_STRCO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|8249949|emb|CAB93370.1| putative NusB-family protein [Streptomyces coelicolor A3(2)]
 gi|289702996|gb|EFD70425.1| transcription antitermination factor NusB [Streptomyces lividans
           TK24]
          Length = 142

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      S               +V       
Sbjct: 1   MAARNTARKRAFQILFEGDQRGADVLTVLADWVRHSRSDTRQPPVSEYTMELVEGYAGRA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + +LR+   ++L++D   D  V+D  V+ AK    + 
Sbjct: 61  ERIDELIAQYSVDWTLDRMPVVDRNILRLGAYELLWVDATPDAVVLDEMVQLAKEFSTDE 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|166710625|ref|ZP_02241832.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 156

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +            ++     + A       D      +V   L     +D  L   L 
Sbjct: 30  QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLTNRAELDTALTPYLD 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             +       + +LR++  ++LY  DV    +++ A+E AKR   + H    VN +L R
Sbjct: 87  RGVEEVDAIERAVLRLAAYELLYRQDVPYRVLINEAIETAKRF-GSEHGHTYVNGVLDR 144


>gi|330969737|gb|EGH69803.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 165

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNQT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALKPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141

Query: 121 A 121
            
Sbjct: 142 K 142


>gi|74318210|ref|YP_315950.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259]
 gi|119390844|sp|Q3SGU8|NUSB_THIDA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|74057705|gb|AAZ98145.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259]
          Length = 145

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   +   M     +T +      D  F+     D+   R ++   L+    + + 
Sbjct: 8   AREFTLQGIYAWMIGGADVTLIAANLKEDEQFKR---ADEAYFRTLLYGVLKEEDMLSSR 64

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +  +L  ++       + +L +   ++L+  DV     ++ +VE AK+        K +N
Sbjct: 65  IAPLLDRAVAELSPIERSILLIGAYELLHCPDVPWRVAINESVELAKKFGGTDG-HKYIN 123

Query: 126 SILRRVSREKIELLQRIAGI 145
            +L +++++   +    A  
Sbjct: 124 GVLDKLAQDVRAVEIEHAKK 143


>gi|182677206|ref|YP_001831352.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182633089|gb|ACB93863.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 155

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 9/140 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLR 58
              ARL +   L  +      L   L           +      + +    R I+   L 
Sbjct: 7   RSAARLAAVQALYQMEVTEKGLNETLAEFESFWIGNEIEGDQYKEAEIAFFRDILGGVLA 66

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDK 115
               ID  LD  L     L R    ++ +LR    ++    D+     +   V+ A    
Sbjct: 67  DQEPIDRQLDKTLVDGWPLRRVDPVVRAILRAGAYELKKRTDIPARVSIKEYVDVAGAFF 126

Query: 116 ENRHFAKLVNSILRRVSREK 135
             R  + ++N++L  ++R  
Sbjct: 127 G-REESGMINAVLDELARRY 145


>gi|196232646|ref|ZP_03131498.1| NusB antitermination factor [Chthoniobacter flavus Ellin428]
 gi|196223408|gb|EDY17926.1| NusB antitermination factor [Chthoniobacter flavus Ellin428]
          Length = 151

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 5/134 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD--SAFRLLSQRDQILVRAIVNVTLR 58
           M      R  +   L  +     +                  ++ + +I    +     +
Sbjct: 1   MGKRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLALGVRK 60

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
            L  ID  +     +  L R     + +LRV++ ++L+  DVA   +++ A+E AK+   
Sbjct: 61  HLEEIDGYIKKYTANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVAKKF-G 119

Query: 117 NRHFAKLVNSILRR 130
                  VN IL R
Sbjct: 120 TDKSGGFVNGILDR 133


>gi|169831182|ref|YP_001717164.1| NusB antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
 gi|238688239|sp|B1I3I9|NUSB_DESAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169638026|gb|ACA59532.1| NusB antitermination factor [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 138

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R  +  +L      RIS                L+  D    + +V+  L  +
Sbjct: 1   MKRRRQ-RETALQVLFQAEVARISGERAFARTME---LFGLNTEDFAYAQELVDGVLAKV 56

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            R+D ++  V     L R     + ++R+++ ++ +  D+     V+ A+E A+      
Sbjct: 57  DRLDRIISRVSHEWRLERMANVDRNIIRLALYEVFFRDDIPINVAVNEALELARTF-GTE 115

Query: 119 HFAKLVNSILRR 130
              + VN IL +
Sbjct: 116 DSRRFVNGILGK 127


>gi|91088013|ref|XP_974000.1| PREDICTED: similar to Nop2p [Tribolium castaneum]
 gi|270012065|gb|EFA08513.1| hypothetical protein TcasGA2_TC006166 [Tribolium castaneum]
          Length = 460

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 141/411 (34%), Gaps = 62/411 (15%)

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE------Q 110
           +R L +++         ++  K+  L+++ R+        D    +  +           
Sbjct: 85  VRTLFKLEKQYSKE-RRTVQEKQKVLREVRRI--------DRELESRANEPKNASLQASL 135

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
              + ++R      N++   +  E +   +       IPE    +       E  +    
Sbjct: 136 DDAELDHRRIIDSKNALSGEILHEFVPATKIKGKEDFIPESTHYKFYKNENFEVFIEEEF 195

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
               P ++++                   +           ++         +++ D  +
Sbjct: 196 DLHFPEHLNVYCF-----------EEGNRSDFEPSPSGSTGVLD--------YYMMDGGS 236

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCN------ 282
            +PV         ++LDLCAAPGGKT  A   +   ++ A DVS  R  ++         
Sbjct: 237 VLPVLALDIRPGNTILDLCAAPGGKTLLAIQTLYPNRIIANDVSMSRTNRVYKVAKQFLY 296

Query: 283 --LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIV 338
              +R     + +I        P++ FD VLVD PC++          ++       + +
Sbjct: 297 DLNERWLQPGKLMITNFDGRSFPQENFDRVLVDVPCTTDRHSVKENDNNIFKPSRVKERL 356

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIPVELVPLN 394
           K    Q  LL   +  VK GG+VV+S CSL    ++ VV   L+     + I V +  L 
Sbjct: 357 KLPETQCDLLFNALKLVKKGGVVVYSTCSLSPIQNDGVVHMTLKRIWEETKIEVVVADLA 416

Query: 395 SAYWKSID----MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            A  ++          +   G + + P + +            +   L+R+
Sbjct: 417 PALRQTKSVFKLANKKIMKYGHL-VVPHLPQNYGPT-------YFCKLKRI 459


>gi|229916254|ref|YP_002884900.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
 gi|259514838|sp|C4L3F7|NUSB_EXISA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229467683|gb|ACQ69455.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
          Length = 128

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +   ++ +   ++                     +V  TL  +
Sbjct: 1   MK-RHEAREKAIQTLFQIEVSKLEVDEAIEFALDGEESD-------PFYEQLVTGTLEHI 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             IDA+L   L +  L R     + +LR++  ++LY++ + +   ++ AVE AK    + 
Sbjct: 53  EDIDALLVENLKNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELAKSF-GDE 111

Query: 119 HFAKLVNSILRR 130
              KLVN +L  
Sbjct: 112 EAGKLVNGVLGN 123


>gi|307185900|gb|EFN71727.1| Putative methyltransferase NSUN5 [Camponotus floridanus]
          Length = 750

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 21/246 (8%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269
                +  G   +QD ++ +P  L   ++   VLD+CAAPG KT  +     +  ++ A+
Sbjct: 338 HKHASYKNGEIILQDKASCLPAHLLNPVSGSIVLDMCAAPGMKTTHIAAKLQNYGQIYAV 397

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPD 327
           ++  +R E L   +   H +    +  DA    PK+      +LVD  CS +G + R   
Sbjct: 398 EIDAKRFETLFKQIKTSHSFCVKPLNQDALTLDPKQYSHVEYILVDPSCSGSGIVDRPEQ 457

Query: 328 VLWTRDTDDI--VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
                            FQ  LL   +        +++S CSL  +++EEV+ +VL    
Sbjct: 458 SNTNNKLLSKRLQNLHSFQVYLLRYALFNFPNAKRIIYSTCSLYPEENEEVIDEVLADIG 517

Query: 386 IPVELVPLNS---AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR-- 440
               LVP        W +         +  +   P++            GFF     R  
Sbjct: 518 NAYCLVPAKELLGNNWTNFSSKRYNCADKCLYSKPNIDFCN--------GFFVAIFDRNF 569

Query: 441 -LIQPK 445
            +  P+
Sbjct: 570 DVALPE 575


>gi|254360609|ref|ZP_04976758.1| N utilization substance B [Mannheimia haemolytica PHL213]
 gi|261493373|ref|ZP_05989899.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496639|ref|ZP_05993019.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153091149|gb|EDN73154.1| N utilization substance B [Mannheimia haemolytica PHL213]
 gi|261307842|gb|EEY09165.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311017|gb|EEY12194.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 137

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   +      + ++  +   E      + +   D    R +    + 
Sbjct: 1   MKISPRRRARECAVQAIYSWYISQNTVEEV---ELAFVTDQDMKGVDMPYFRKLFRGVVD 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            +  ID  L   L           + +LR+S  ++ +  DV    V++  +E AK    +
Sbjct: 58  NVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRVVINEGIEVAK-VFGS 116

Query: 118 RHFAKLVNSILRR 130
               K +N IL +
Sbjct: 117 DDSHKYINGILDK 129


>gi|21230173|ref|NP_636090.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769837|ref|YP_244599.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188993052|ref|YP_001905062.1| transcription antitermination protein NusB [Xanthomonas campestris
           pv. campestris str. B100]
 gi|24638071|sp|Q8PCM6|NUSB_XANCP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81304209|sp|Q4UQU4|NUSB_XANC8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620372|sp|B0RVD1|NUSB_XANCB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21111708|gb|AAM40014.1| transcription termination factor NusB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575169|gb|AAY50579.1| transcription termination factor NusB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734812|emb|CAP53022.1| antitermination factor, NusB family [Xanthomonas campestris pv.
           campestris]
          Length = 159

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +            ++     + A       D     ++V   L     +D  L   L 
Sbjct: 30  QAVYAWQIAGGFAKQVIAQFAHEQAH---EVADLAYFESLVEGVLSNRSELDTALTPYLD 86

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             +       + +LR++  ++LY  DV    V++ A+E AKR   + H    VN +L R 
Sbjct: 87  RGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145

Query: 132 SREKIEL 138
           + E  ++
Sbjct: 146 AVEWRKM 152


>gi|271964358|ref|YP_003338554.1| transcription antitermination factor NusB [Streptosporangium roseum
           DSM 43021]
 gi|270507533|gb|ACZ85811.1| transcription antitermination factor NusB [Streptosporangium roseum
           DSM 43021]
          Length = 136

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 8/135 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      +L      +   +           IV    R  
Sbjct: 1   MSARGKARRRALDILFEAEARSQDPLSVLAERLERAEPPVNE-----YTATIVEGVCRHR 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + LLR    ++L++ DV +  V+   V  A  +    
Sbjct: 56  ARIDELITTYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLA-SELSTD 114

Query: 119 HFAKLVNSILRRVSR 133
              + VN ++ R  +
Sbjct: 115 ESPQFVNGLMARFKQ 129


>gi|295839941|ref|ZP_06826874.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
 gi|197696775|gb|EDY43708.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
          Length = 144

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      S               +V       
Sbjct: 1   MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRSDTQQPPVSEYTMELVEGYAAHA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID V+        L R     + ++R+   +++++D   D  V+D AVE AK    + 
Sbjct: 61  RRIDEVIAKYSVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAKEFSTDD 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|118579723|ref|YP_900973.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
 gi|166215707|sp|A1ANJ5|NUSB_PELPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118502433|gb|ABK98915.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
          Length = 143

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 5/136 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     +R ++  +L  +          +   + +   + +S R ++    +V   L   
Sbjct: 1   MGLRRESRELALQMLYALDSNASVGPREMLQMFREE--QPVSDRLRLFAEELVQGVLEHR 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
           P IDA +     + SL R       ++R++  ++++  D+     ++ A+E A+R   ++
Sbjct: 59  PAIDAAIKARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAIEIARRF-GDK 117

Query: 119 HFAKLVNSILRRVSRE 134
                VN IL  +   
Sbjct: 118 DSPAFVNGILDEIPSC 133


>gi|291440809|ref|ZP_06580199.1| hypothetical Sun-family protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291343704|gb|EFE70660.1| hypothetical Sun-family protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 120

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +LVD PC+  G +RR P+  W R  +D+   A  QR LL   +  V+ GG+V ++ CS  
Sbjct: 1   MLVDVPCTGLGALRRRPEARWRRRPEDLAGFAPLQRGLLRTALESVRVGGVVGYATCSPH 60

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             ++  VV  +L   P   EL+          D+         +++ P +         G
Sbjct: 61  LAETRAVVADLLGQFP-DAELIDARPLLPGVPDLGEGPD----VQLWPHL--------HG 107

Query: 430 MDGFFAVALRR 440
            D  +   +RR
Sbjct: 108 TDAMYLALIRR 118


>gi|284006399|emb|CBA71635.1| N utilization substance protein B [Arsenophonus nasoniae]
          Length = 137

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   +        S+  + +    +   + +S  D    R ++N    
Sbjct: 1   MKPAARHRARECAVQAIYSWQLSGNSIADVEEEFLTE---QDMSNVDVTYFRELLNGVST 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
            +  +D  +   L   L       + +LR+++ ++ Y  DV     ++ A+E AK     
Sbjct: 58  HVSELDKKMAPYLSRQLEELGQVEKAVLRLAMFELCYRNDVPYKVAINEAIELAK-VFGA 116

Query: 118 RHFAKLVNSILRR 130
               K +N  L +
Sbjct: 117 EESHKFINGALDK 129


>gi|163848950|ref|YP_001636994.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
           J-10-fl]
 gi|163670239|gb|ABY36605.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
           J-10-fl]
          Length = 153

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R+ +  +L  V     ++  +L+    D      S      +R +V         +
Sbjct: 12  RHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAE---FLRRLVFGAWEHRSYL 68

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDV---ADYAVVDLAVEQAKRDKENRH 119
           D +++       + +     + +LR+++ ++L  DV      AV++ AVE AK+   + +
Sbjct: 69  DRIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQF-GSDN 127

Query: 120 FAKLVNSILRRVSREK 135
            ++ VN +L  V    
Sbjct: 128 SSRFVNGVLGTVVTRY 143


>gi|15897082|ref|NP_341687.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus P2]
 gi|284173427|ref|ZP_06387396.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus 98/2]
 gi|13813255|gb|AAK40477.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus P2]
 gi|261601737|gb|ACX91340.1| Fmu (Sun) domain protein [Sulfolobus solfataricus 98/2]
          Length = 368

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 113/303 (37%), Gaps = 31/303 (10%)

Query: 148 IPEWFKERLENFYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201
            P+W +++L        +        I             V   +E+   +         
Sbjct: 80  FPKWMEDKLFTLLDVNALKRKLTERWIWARINLLKTDIDKVYRMLESQNIEFEPDKDFYY 139

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
            I++      + SL    +    + D ++SI V+      +  ++DL +APG K +  ++
Sbjct: 140 MIKINRSSVRLSSLSIVKDFKLILHDKASSIVVEALKPEISEKLVDLSSAPGIKASLYMM 199

Query: 262 ---SGAKVTALDVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPC 316
              + A+    DV  +RL K    L R  +      II  D+         D +L+DAPC
Sbjct: 200 LTENRAETFLADVDLKRLSKEYNLLKRCGVDLRKVHIIYQDSTKNS-IIKSDKILLDAPC 258

Query: 317 SSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
           SS+G I   P +L   R+ + I K    Q+ LL + +  +K    +V++ CSL  ++ E+
Sbjct: 259 SSSGMINNDPSILLKLRNGEKIEKFTKLQKSLLNEALK-IKSN-KLVYAVCSLFPEEGEK 316

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           V++         +   P ++                  R  P +           +GFF 
Sbjct: 317 VIEDY-----YEIAEKPFSNYQSGYSLFKSGKRSN---RTFPHI--------DSTEGFFI 360

Query: 436 VAL 438
             L
Sbjct: 361 STL 363


>gi|302143528|emb|CBI22089.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD VL+DAPCS+ G   R          + +   A +QR++  Q +  V+PGG++
Sbjct: 415 FSPNSFDRVLLDAPCSALGL--RPRLFAGEETIESLRNHAKYQRRMFDQAVQLVRPGGVI 472

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITPD- 418
           V+S C+++  ++E +V+  L +    + L   +        +      +G+    + P  
Sbjct: 473 VYSTCTINPGENEALVRYALDTYK-FLSLASQHPRAGGPGLVGCFQFSDGYTEEWLRPGE 531

Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438
              +            GFF    
Sbjct: 532 EELVQRFDPSSPLDTIGFFIAKF 554


>gi|225446803|ref|XP_002279096.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 573

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD VL+DAPCS+ G   R          + +   A +QR++  Q +  V+PGG++
Sbjct: 427 FSPNSFDRVLLDAPCSALGL--RPRLFAGEETIESLRNHAKYQRRMFDQAVQLVRPGGVI 484

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITPD- 418
           V+S C+++  ++E +V+  L +    + L   +        +      +G+    + P  
Sbjct: 485 VYSTCTINPGENEALVRYALDTYK-FLSLASQHPRAGGPGLVGCFQFSDGYTEEWLRPGE 543

Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438
              +            GFF    
Sbjct: 544 EELVQRFDPSSPLDTIGFFIAKF 566


>gi|146276474|ref|YP_001166633.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025]
 gi|145554715|gb|ABP69328.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025]
          Length = 157

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     ++  +                 +++ D    R+IV+ 
Sbjct: 10  MKS--ASRLYAVQALFQMECSGQTVEQVAREFETHRFGAIYEGDEMAEGDARSFRSIVSG 67

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +     ID + D  L     + R    ++ L R + +++L  D     V++  V+ AK 
Sbjct: 68  AVNRQAGIDQLTDRALVAKWPIDRIDPVIRALFRAAGSELLESDTPPKVVINEFVDIAKA 127

Query: 114 DKENRHFAKLVNSILRRV 131
              +    K VN++L  +
Sbjct: 128 FFPDGREPKFVNAVLDHM 145


>gi|213969286|ref|ZP_03397424.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato T1]
 gi|301381790|ref|ZP_07230208.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061010|ref|ZP_07252551.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato K40]
 gi|302130538|ref|ZP_07256528.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213925964|gb|EEB59521.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. tomato T1]
 gi|330964918|gb|EGH65178.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 165

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNQT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALTPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 141 HKFVNGVLDK 150


>gi|322501904|emb|CBZ36987.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 414

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 28/257 (10%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR 274
           +  F    +++ D +++  V+        +VLD+CAAPGGK+  +    +   AL  ++ 
Sbjct: 144 IDAFGIKAYYLLDYASAHVVEQLQVGAFDTVLDMCAAPGGKSVAVAQFLSPDGALTCNEA 203

Query: 275 RLEKLRCNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRR 324
           R ++       L  +           + DA  +     F  VLVDAPCSS          
Sbjct: 204 RADRCARLRRNLQEHVPVNYVPWRTTQRDAQTWYDPGAFSRVLVDAPCSSERHLLQQSGG 263

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
            P  L     +   + A  QR LL + I   + GG  V+S CS+   +++ VV +VL+ +
Sbjct: 264 SPLSLREWSEETTAQLAALQRMLLQRAIETCRVGGRTVYSTCSISPLENDGVVGEVLQRT 323

Query: 385 PIPVELVPLNS-------AYWKSIDMAMALSPEGWIRITPD----------MLEKIDGVS 427
              V+++  +S       A  K+   A      G     P               +   +
Sbjct: 324 RCEVKVIKTSSAAAAALVAPPKTATDASESDASGAEACAPHTPTVLGEATAYGRLLLPDT 383

Query: 428 SGMDG-FFAVALRRLIQ 443
               G  F   L +  +
Sbjct: 384 CHGWGPMFFCVLEKTAE 400


>gi|302678559|ref|XP_003028962.1| hypothetical protein SCHCODRAFT_78630 [Schizophyllum commune H4-8]
 gi|300102651|gb|EFI94059.1| hypothetical protein SCHCODRAFT_78630 [Schizophyllum commune H4-8]
          Length = 779

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 101/322 (31%), Gaps = 53/322 (16%)

Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML 198
                     P     R+       R L  +        +   V  D      +      
Sbjct: 24  WDNFINAFRQPLPVTFRVTGNRSTARTLNETIVHKHVPNLQNVVFEDKPIPPPEQIPWFP 83

Query: 199 PTGGIRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLD 247
                ++    + +     F +                Q+A + +P           V+D
Sbjct: 84  EGLSWQVNVPKKVLRKQEEFRKFHSFLVGETEVGNISRQEAVSMLPPLFLDVKPWHRVID 143

Query: 248 LCAAPGGKTAQLIVS-----------------GAKVTALDVSKRRLEKLRCNLDRLHLYA 290
           LCAAPG KTAQL+                      + A D   +R   L     RL   A
Sbjct: 144 LCAAPGSKTAQLLEMLHSAPDPNAEDDLLPLPSGLLLANDSDAKRTHLLIHQSARLPSPA 203

Query: 291 EDIIEMDAFDYCPKKL----------------------FDAVLVDAPCSSTGTIRRHPDV 328
             +  +DA  Y   ++                      FD +L D PCS  GT+R++  +
Sbjct: 204 LMVTNLDASRYPGIRVPAWVLQKGEQAGPKDEKLRRLTFDRILADVPCSGDGTLRKNLGI 263

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFV--KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
             T    D       Q ++L + +  +  + G  +V+S CSL+  ++E V+ + L +   
Sbjct: 264 WKTWTVADGNGLHSLQLRILTRAMQMLSSESGSRIVYSTCSLNPTENEAVIAEALAA-IR 322

Query: 387 PVELVPLNSAYWKSIDMAMALS 408
             ELV  ++            +
Sbjct: 323 DFELVDASTHLPALKRRPGLKT 344



 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 8/45 (17%)

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 +     E  +RI P + +          GFF   L R  
Sbjct: 409 PGHFPPSEDFHLERCVRIYPHLQD--------TGGFFVAVLERKA 445


>gi|254821720|ref|ZP_05226721.1| Fmu protein [Mycobacterium intracellulare ATCC 13950]
          Length = 171

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 26  TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQL 85
              L     +   R ++ RD      +     R    +DAV+      +       L  L
Sbjct: 1   NLALPALLRE---RGITGRDAAFATELTYGACRSRGLLDAVIGAAAGRTPQAIDPVLLDL 57

Query: 86  LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ----- 140
           LR+   Q+L   V  +A V   VEQA   + +   A  VN +LR +S    +        
Sbjct: 58  LRLGAYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVNGVLRTISGRDEQSWVAELAP 116

Query: 141 --------RIAGISIIPEWFKE 154
                     A +   P W  +
Sbjct: 117 DPARDPIGHAAFVHAHPRWIAQ 138


>gi|156386868|ref|XP_001634133.1| predicted protein [Nematostella vectensis]
 gi|156221212|gb|EDO42070.1| predicted protein [Nematostella vectensis]
          Length = 232

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 14/216 (6%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVS---KRRL 276
           +++ DA++ +PV       + +VLD+CA+PGGKT  ++        + A + +   +R+L
Sbjct: 8   YYLLDAASLLPVICLDVGPDSTVLDMCASPGGKTVAMMQLLSERGGLVANEPTQSRRRKL 67

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
            K+             I  MD   +       +D +LVDAPCS+     R      +   
Sbjct: 68  RKVIQEYIPKGQTNITIRGMDGTKFGGLEPCSYDRILVDAPCSTDRHCLRSGFQTDSWSE 127

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-----PIPVE 389
               K +  Q KL++  +  +   G VV+S C++   +++ V+Q VL +       I +E
Sbjct: 128 KKSQKFSQLQNKLVMSALGSLTSDGRVVYSTCTMSPYENDGVIQGVLENFRHGGKNISIE 187

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
            +             +  +  G+I + P + +    
Sbjct: 188 RISEEQIAAWGEMFDIRRTEHGFI-VLPSVEKNWGP 222


>gi|302550131|ref|ZP_07302473.1| transcription antitermination factor NusB [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467749|gb|EFL30842.1| transcription antitermination factor NusB [Streptomyces
           viridochromogenes DSM 40736]
          Length = 144

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++      +L      S               +V    +  
Sbjct: 1   MAARNTARKRAFQILFEGDQRGAEALTVLADWVRLSRADTRQPPVSEYTMELVEGYAKHA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + +LR+   +++++D   D  V+D  V+ AK    + 
Sbjct: 61  KRIDELIAQYSVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAKEFSTDE 120

Query: 119 HFA 121
             +
Sbjct: 121 SPS 123


>gi|270308448|ref|YP_003330506.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
 gi|270154340|gb|ACZ62178.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
          Length = 143

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +    AR +    L        +   +L     ++     +      +  + N  ++ 
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLRRLLTETPQTEENTE---FIFRLTNAVVKH 57

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +D  +        + +  Y  + +LR+++ +I++  DV     ++ AVE AK    N
Sbjct: 58  KELLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGN 117

Query: 118 RHF 120
              
Sbjct: 118 SSA 120


>gi|153005587|ref|YP_001379912.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
 gi|166215659|sp|A7HDY2|NUSB_ANADF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152029160|gb|ABS26928.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
          Length = 143

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLE---YGDSAFRLLSQRDQILVRAIVNVT 56
           M      AR  +   L  +      +   L      +      ++   +   VR      
Sbjct: 1   MSLKRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMEDAE-GFVR----GV 55

Query: 57  LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
                 ID  ++ V  +  L R     + +LR++V ++L  DV     ++ A+E  K+  
Sbjct: 56  AAHRRTIDDTIEGVSTNWRLDRMAKVDRNVLRLAVYELLRTDVPVKVAINEAIELGKKY- 114

Query: 116 ENRHFAKLVNSILRR 130
            +      VN +L +
Sbjct: 115 GSESSGAFVNGVLDK 129


>gi|152976586|ref|YP_001376103.1| transcription antitermination protein NusB [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189035878|sp|A7GSK0|NUSB_BACCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152025338|gb|ABS23108.1| NusB antitermination factor [Bacillus cytotoxicus NVH 391-98]
          Length = 130

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    AR  +   L  +      +    ++    +             + ++V   +  
Sbjct: 1   MKRRT-ARERAMQALYQMDITGELNPKVAVENTLDEGEETN------EFLDSLVGGFVEH 53

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID ++   L    L R     + +LR++V ++ Y+ ++     ++ A+E AK    +
Sbjct: 54  KETIDELIRQNLKKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTF-GD 112

Query: 118 RHFAKLVNSILRR 130
               + +N +L  
Sbjct: 113 EESRRFINGVLSN 125


>gi|255071451|ref|XP_002499399.1| predicted protein [Micromonas sp. RCC299]
 gi|226514662|gb|ACO60658.1| predicted protein [Micromonas sp. RCC299]
          Length = 408

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 116/369 (31%), Gaps = 31/369 (8%)

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
            L    +A+V   ++     +     A +  +       + +      A      +    
Sbjct: 48  RLKRPTHALVCETLKHVPITRLALERAGVALAPDFNARSDGVGARGAEAPHGAAADEDGF 107

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214
                  +    A+    +    + L+V       A            + + +    +  
Sbjct: 108 YARLRAPEADGDAVPRRHVRVNTLKLSVDEATRRLASHRPKRDPHVSDVLVFKPGTDLHD 167

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDV 271
            P    G   +Q  ++ +P    G      V+D CAAPG KT  L   +    +V A D 
Sbjct: 168 HPMVRSGEIVLQGKASCLPAAALGPKRGWDVVDCCAAPGNKTTHLAALVGDRGRVRAFDA 227

Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHP 326
             +RL++L  N+      A  D    D  +  P         AVL+D  CS +GT     
Sbjct: 228 DGKRLKRLARNVSTAGAGAIVDAKRADFLEVDPLDPEYAGVRAVLLDPSCSGSGTAGTRG 287

Query: 327 DVL---------------WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           D L                 R    +   A FQ + LL    F      + +S CS+ + 
Sbjct: 288 DYLIAAARGEKDDPTRGHHLRPDKRVDALAQFQLRALLHAFEFPAAE-RLSYSTCSVHEA 346

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E VV+  L  +      +      W    +  A+     +        + D     M+
Sbjct: 347 ENEAVVRAALPRAAELGWRLCAAMPEWPRRGLDGAVEGAECL-------IRADQFEDDME 399

Query: 432 GFFAVALRR 440
           GFF     R
Sbjct: 400 GFFVAVFVR 408


>gi|220903300|ref|YP_002478612.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867599|gb|ACL47934.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 526

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 30/219 (13%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCN 282
           W    S    + L     +  V D CA  GGK+  L+  G       D S  RL  L   
Sbjct: 336 WQSAGSQQALLALGLDRWHEPVWDACAGHGGKSTALMEWGVPVSLCTDRSFARLRGLPTQ 395

Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
              L L        DA      +    +LVDAPCS  G + R PD+   R+   + +   
Sbjct: 396 CTTLGLPVPPHCLADAIRPPVGQWPGHILVDAPCSGLGVLGRRPDIR-RREPQHLAELEV 454

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            Q+ +L      ++PG  + +  C+L+  ++E  V ++L ++      + +   +     
Sbjct: 455 LQQNMLRVLADILQPGRELAYITCTLNPAENERAVDQLLENNSD----LTIERQWQTGHS 510

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                                      ++G F   LR+ 
Sbjct: 511 HPW------------------------LEGMFGAVLRKK 525



 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 75/246 (30%), Gaps = 49/246 (19%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-------------------AFRLLS 42
           K   N R  +   L  V    +S    L                            + LS
Sbjct: 11  KLSCNGRTAALRALLLVDD-GLSAQQALASVLDAPVAHGASGNSREKSHTANAGRCQGLS 69

Query: 43  QRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADY 101
            +D+ L   +V   LR   R++ +L  VL          +Q LL ++V  +L+ D V  +
Sbjct: 70  AQDRALCTELVYGCLRTELRLNFLLGRVLPRP-QGLPRPMQILLALAVYGLLFQDKVPSH 128

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSIL------------------------RRVSREKIE 137
           AVV  AVEQA+     +  A++ N  L                         R      +
Sbjct: 129 AVVYEAVEQARALFG-QGLARVANGALRSLQRMGEEPAQPSFYAGQSGVKKYRHGAGGTD 187

Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNA 195
                     IP W  E   + YG E  L +        +  + +  +       H + A
Sbjct: 188 SFLGKCIFYSIPLWIGELWRSAYGDEAALRLMQRSFERPWAALRINARHTDGAALHAVLA 247

Query: 196 VMLPTG 201
                G
Sbjct: 248 APQAEG 253


>gi|73748962|ref|YP_308201.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
 gi|147669729|ref|YP_001214547.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
 gi|289432959|ref|YP_003462832.1| NusB antitermination factor [Dehalococcoides sp. GT]
 gi|119390765|sp|Q3ZYI9|NUSB_DEHSC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035888|sp|A5FQ51|NUSB_DEHSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|73660678|emb|CAI83285.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
 gi|146270677|gb|ABQ17669.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
 gi|288946679|gb|ADC74376.1| NusB antitermination factor [Dehalococcoides sp. GT]
          Length = 143

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +    AR +    L        +   +L     ++     +      +  + N  ++ 
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVE---FIFRLTNAVVKH 57

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +D  +        + +  Y  + +LR+++ +I++  DV     ++ AVE AK    N
Sbjct: 58  KDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGN 117

Query: 118 RHF 120
              
Sbjct: 118 SSA 120


>gi|327268799|ref|XP_003219183.1| PREDICTED: putative methyltransferase NSUN3-like [Anolis
           carolinensis]
          Length = 352

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 96/258 (37%), Gaps = 19/258 (7%)

Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                   I                   +++ +A++ + V      N   VLD+CAAPGG
Sbjct: 103 ETSSFKCYICSTPGRFPAQRHRAGKLKEYYLLNAASLLAVLALEVENGEKVLDMCAAPGG 162

Query: 255 KTAQLIVSGAKVTAL------DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKL 306
           K+   +                 S    + L   +    ++A    ++D         + 
Sbjct: 163 KSIATLQCAWPGLLHCNEYDHLRSLWLKQTLESFIPESVMHAVAFSQLDGQQIGNLQPEY 222

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
           FD VLVDAPCS+  +     D+             +  Q +LL   +  ++PGG +V+S 
Sbjct: 223 FDKVLVDAPCSNDRSWLFSSDIQQAALRLAQRKLLSAVQIQLLRSAVKALRPGGYLVYST 282

Query: 366 CSLDKQDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           C+L K ++ +V+  +L S     PV+L PL S+  +    A  +     + + P   +  
Sbjct: 283 CTLSKAENSDVITHILNSCSNVLPVDLGPLASSVSQEFTFAPGVQS-HELLVLPQNGKAW 341

Query: 424 DGVSSGMDGFFAVALRRL 441
                     +   L+++
Sbjct: 342 GP-------MYISKLKKI 352


>gi|302824658|ref|XP_002993970.1| hypothetical protein SELMODRAFT_431936 [Selaginella moellendorffii]
 gi|300138177|gb|EFJ04954.1| hypothetical protein SELMODRAFT_431936 [Selaginella moellendorffii]
          Length = 378

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 23/231 (9%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRL 276
             +++ DA++ +  +         VLDLCAAPGGKT  ++         + A + S  R 
Sbjct: 132 FDYYLMDAASVLVTEALDLEVGDKVLDLCAAPGGKTLGILQQLDLLQGSLVANEPSPTRS 191

Query: 277 EKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           ++L   +             +   +   +    L+D VLVDAPCSS   +   P  L T 
Sbjct: 192 KRLSKVISEYVPANLRTSIRVTRRNGIKWMEHDLYDKVLVDAPCSSERHLLHDPKELGTW 251

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                   A  Q  LL   +   K  G +V+S CSL + +++ V+ K L    +  E++ 
Sbjct: 252 TPRRTENCAKRQLALLFAALRAAKLYGRIVYSTCSLSQLENDCVISKALEKGKLDFEII- 310

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                W   +     +  GWI I PD+ +    +       +   L++L  
Sbjct: 311 --QKQWPVGER----TEHGWI-ILPDVSQGWGPI-------YIAVLKKLST 347


>gi|229847453|ref|ZP_04467550.1| transcription antitermination protein NusB [Haemophilus influenzae
           7P49H1]
 gi|229809594|gb|EEP45321.1| transcription antitermination protein NusB [Haemophilus influenzae
           7P49H1]
          Length = 144

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +   +   E      + +   D+   R +   T+  + 
Sbjct: 11  SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +  +          +LR++V ++ + LDV    V++ A+E AK    +   
Sbjct: 68  TVDFSISPYIDRTFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|239978405|ref|ZP_04700929.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
 gi|291450301|ref|ZP_06589691.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
 gi|291353250|gb|EFE80152.1| transcription antitermination protein NusB [Streptomyces albus
           J1074]
          Length = 142

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      +               +V       
Sbjct: 1   MAARNTARKRAFQILFEADQRSTDVLTVLADWIRHARSDTRQPPVSEYTMELVEGYAEHE 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +  +L R     + +LR+   +++++D   D  V+D AV+ AK    + 
Sbjct: 61  RRIDELIAQYAVDWTLDRMPVVDRNILRLGAYELIWVDTTPDAVVLDEAVQLAKEFSTDD 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|241889927|ref|ZP_04777225.1| transcription antitermination factor NusB [Gemella haemolysans ATCC
           10379]
 gi|241863549|gb|EER67933.1| transcription antitermination factor NusB [Gemella haemolysans ATCC
           10379]
          Length = 131

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R     +L  V    +    LLDLE  + +  +        V   +   L   
Sbjct: 1   MKSRHELREAVFKILFQVENTELDFIELLDLEQEEISTSI-------YVNKTLTEILEKK 53

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID ++   L    L R     +Q+LR+S  +ILY D+     ++ AVE +K+  E   
Sbjct: 54  EEIDEIISNNLKDWKLERLSKMDRQILRISAYEILYSDIPYKVSINEAVELSKKYSEKDE 113

Query: 120 FAKLVNSILR 129
             K +N +L+
Sbjct: 114 SYKFINGVLK 123


>gi|332796253|ref|YP_004457753.1| Fmu (Sun) domain-containing protein [Acidianus hospitalis W1]
 gi|332693988|gb|AEE93455.1| Fmu (Sun) domain protein [Acidianus hospitalis W1]
          Length = 358

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 113/302 (37%), Gaps = 35/302 (11%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLK 206
           +P W +E L  +   + +        +  ++ +  +K D++     L    +     +  
Sbjct: 78  LPLWAREELSKYLDVKPLENSFRIKNT--WVRINTLKADVDKVLKSLENQGVNFEVDKDV 135

Query: 207 ELPESIVS------LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
                + +         F      +QD ++ + V+      N  ++DL +APG K +Q++
Sbjct: 136 YYLIKVKNEVQLKKTKEFMNFEVIIQDKASVLTVESLEVEKNDKIIDLSSAPGTKASQIM 195

Query: 261 VSGAKVT---ALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPC 316
             G         DV   RL++    L ++ +   +  I             D VL+DAPC
Sbjct: 196 QLGENTVELFIADVDINRLKREVDLLKKMGVDMNKVHIIHQDSTSNSMLRSDKVLLDAPC 255

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           SS+G I   P ++     + ++  +  QRK++ +    +     +++S CSL  ++ E  
Sbjct: 256 SSSGMISNEPAIMVNLTREKVMYYSQLQRKMINEARKIIDAD-YIIYSVCSLFPEEGE-- 312

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
            +  L           L +   K +     +     IR+ P +           +GFF  
Sbjct: 313 -EHFLN----------LKTEKPKIVGERPYIDNVNGIRLFPHINL--------TEGFFIT 353

Query: 437 AL 438
            +
Sbjct: 354 KI 355


>gi|283853206|ref|ZP_06370458.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
 gi|283571379|gb|EFC19387.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
          Length = 167

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLR 58
            S   AR  +   L  ++ +  +    L   +      ++   D   Q     +V    +
Sbjct: 19  ASRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVMEGEDGAGQAFAWELVQGVWQ 78

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
               +DA++     +  L R       +LR+++ +IL+  D+     ++ A+E AKR   
Sbjct: 79  NQRELDALIVKFSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAIELAKRY-G 137

Query: 117 NRHFAKLVNSILR 129
           + +    +N IL 
Sbjct: 138 DENSRNFINGILD 150


>gi|148826048|ref|YP_001290801.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittEE]
 gi|166215690|sp|A5UCB7|NUSB_HAEIE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148716208|gb|ABQ98418.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittEE]
 gi|309973183|gb|ADO96384.1| Transcription antitermination protein NusB [Haemophilus influenzae
           R2846]
          Length = 144

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +   +   E      + +   D+   R +   T+  + 
Sbjct: 11  SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +  +          +LR++V ++ + LDV    V++ A+E AK    +   
Sbjct: 68  TVDFSISPYIDRTFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|325292546|ref|YP_004278410.1| transcription antitermination protein NusB [Agrobacterium sp.
           H13-3]
 gi|325060399|gb|ADY64090.1| transcription antitermination protein NusB [Agrobacterium sp.
           H13-3]
          Length = 165

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + +      + D    R+IV+  +R  
Sbjct: 23  AARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDTYLKADPSWFRSIVSGVVRDQ 82

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            +ID ++   L     L R   +++ +LR    +IL   DV    +V   VE A+   E+
Sbjct: 83  TKIDPLVRSALLEDWPLSRLDATVRAILRAGAFEILERKDVPVAVIVTEYVEIARAFFEH 142

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 143 DE-PKLVNAVLDR 154


>gi|169606728|ref|XP_001796784.1| hypothetical protein SNOG_06412 [Phaeosphaeria nodorum SN15]
 gi|111065123|gb|EAT86243.1| hypothetical protein SNOG_06412 [Phaeosphaeria nodorum SN15]
          Length = 857

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 43/194 (22%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------------- 266
              Q+  + IP         + VLD+CAAPG K+AQL                       
Sbjct: 157 ISRQEVVSMIPPHFLDVKPGMVVLDMCAAPGSKSAQLAEMIHGDEEDRVRRAANGEPTGS 216

Query: 267 ----------------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----- 305
                            A D   +R   L   + RL+     + + DA  +   +     
Sbjct: 217 GEDGDYSDDGRSTGLLIANDTDYKRAGMLVHQVKRLNFPNLIVTQHDASIFPSIELPSSG 276

Query: 306 ------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  +D +L D PC+  GT R++P+V       D +     Q ++L +G+  +K GG
Sbjct: 277 QKKNYLKYDRILADVPCAGDGTARKNPNVWQKWTPKDGLGLHNLQLRILFRGLQMLKKGG 336

Query: 360 IVVFSNCSLDKQDS 373
            +V+S CS++  ++
Sbjct: 337 RMVYSTCSMNPVEN 350


>gi|209548794|ref|YP_002280711.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|238055477|sp|B5ZXV2|NUSB_RHILW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|209534550|gb|ACI54485.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 160

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + L      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAGWFRSIVSGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            R+D ++   L    +L R   +++ +LR  V +I    DV    +V   VE A+    +
Sbjct: 78  TRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFF-D 136

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 137 DDEPKLVNAVLDR 149


>gi|327191850|gb|EGE58847.1| transcription antitermination protein B [Rhizobium etli CNPAF512]
          Length = 160

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + +      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGATYLKADAGWFRSIVSGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            R+D ++   L    +L R   +++ +LR  V ++L   DV    +V   VE A+    +
Sbjct: 78  VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKDVPVAVIVTEYVEIAQAFF-D 136

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 137 DDEPKLVNAVLDR 149


>gi|226495531|ref|NP_001145845.1| hypothetical protein LOC100279356 [Zea mays]
 gi|219884681|gb|ACL52715.1| unknown [Zea mays]
          Length = 585

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 271 VSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           +SK  L K LR   +           ++         FD VL+DAPCS+ G   R     
Sbjct: 406 ISKAELRKNLRQMKNGPGRNNCSGGRVEKSKGFCPNSFDRVLLDAPCSALGL--RPRLFA 463

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
                + + K + +QRK+  Q +  V+PGG++V+S C+++  ++E +V+  L +      
Sbjct: 464 GEETLESLKKHSKYQRKMFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDTYKFLSL 523

Query: 390 LVPLNSAYWKSI----DMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438
           +          I    ++      E W+R     L +    SS +D  GFF    
Sbjct: 524 VSQYPKVGGPGIVGSCELFNKTYTEEWLREDEADLVQRFDPSSSVDTIGFFIAKF 578


>gi|301095411|ref|XP_002896806.1| tRNA (cytosine-5-)-methyltransferase, putative [Phytophthora
           infestans T30-4]
 gi|262108689|gb|EEY66741.1| tRNA (cytosine-5-)-methyltransferase, putative [Phytophthora
           infestans T30-4]
          Length = 691

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 102/304 (33%), Gaps = 77/304 (25%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS------------ 262
           L     G    Q+A + +PV       +  VLD+CA+PG KT Q+I              
Sbjct: 127 LEQTDRGNIDRQEAVSMLPVLFLDVQRSHRVLDMCASPGSKTTQVIDFLLSTENGDNGEQ 186

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVL 311
              V A D+ K+R   L   L R  L    +       +            P  +FD VL
Sbjct: 187 SGLVIANDLDKKRAYMLVHRLSRNTLRRAVVTCGAGDTFPGLYDAKTKTLQPTNVFDRVL 246

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
            D PCS  GT+R++  +         +     Q  L L+G + ++  GI+V+S CS +  
Sbjct: 247 CDVPCSGDGTLRKNQTLWKEWHIGQGLTLHPTQLALALRGAALLRVNGIMVYSTCSFNPV 306

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR-----ITPDMLEKIDGV 426
           ++E VV ++LR +   +EL+ +++     I            R          L K D  
Sbjct: 307 ENEAVVAELLRRAGGSLELLDVSNKMPGLIARPGRSKWRVGWRSKSKSTHKGHLFKEDKH 366

Query: 427 SSG---------------------------------------------MD----GFFAVA 437
                                                            D    GFF   
Sbjct: 367 EDDQSLHQWFDSYEALTQELRGSRVTRSMFPTEGVIADELHKTLRLIPTDQNSGGFFIAV 426

Query: 438 LRRL 441
           LR++
Sbjct: 427 LRKV 430


>gi|190891211|ref|YP_001977753.1| transcription antitermination protein B [Rhizobium etli CIAT 652]
 gi|218514737|ref|ZP_03511577.1| transcription antitermination protein NusB [Rhizobium etli 8C-3]
 gi|238692516|sp|B3PVD4|NUSB_RHIE6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190696490|gb|ACE90575.1| transcription antitermination protein B [Rhizobium etli CIAT 652]
          Length = 160

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + +      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGATYLKADAGWFRSIVSGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            R+D ++   L    +L R   +++ +LR  V ++L   DV    +V   VE A+    +
Sbjct: 78  VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKDVPVAVIVTEYVEIAQAFF-D 136

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 137 DDEPKLVNAVLDR 149


>gi|15615348|ref|NP_243651.1| transcription antitermination protein NusB [Bacillus halodurans
           C-125]
 gi|20139208|sp|Q9K965|NUSB_BACHD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|10175406|dbj|BAB06504.1| transcriptional terminator [Bacillus halodurans C-125]
          Length = 134

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 10/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + +RL +   L  +     S+   ++    +             +  +V+ T+   
Sbjct: 1   MNRRL-SRLRAVQALYQMDVIDTSMEKAIESVLDEGEEAS------SFMSDLVSGTVTHQ 53

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             +D +    L   ++ R     + +LR+++ ++ Y  D+      + A+E AK      
Sbjct: 54  EELDRLYADHLQGWTVDRIGNVDRAILRMALYELYYVDDIPKNVSFNEAIELAKAF-GGE 112

Query: 119 HFAKLVNSILRRVSREKIE 137
              + +N +L +       
Sbjct: 113 DAGRFINGVLSKTMEAYKP 131


>gi|32265536|ref|NP_859568.1| transcription antitermination protein NusB [Helicobacter hepaticus
           ATCC 51449]
 gi|39931804|sp|Q7VK55|NUSB_HELHP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|32261584|gb|AAP76634.1| transcription termination factor NusB [Helicobacter hepaticus ATCC
           51449]
          Length = 157

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 4/145 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     +L        S+  +      +   +    + Q    +++   +  L
Sbjct: 1   MATRTQAREAVIGMLYAYDLGNESIIEIARSMLEEKKIKN---KQQDFAFSLLQGVIEHL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +ID  +   L      R     + +LR+   +ILY +     +++ AVE  K      +
Sbjct: 58  SQIDLCIAPYLKEWEFSRLGGMERAMLRLGAFEILYTETDTPVIINEAVELGKMYGGEDN 117

Query: 120 FAKLVNSILRRVSREKIELLQRIAG 144
             + +N +L  +S+   +  +    
Sbjct: 118 APRFINGVLDALSKAHTKNKKSEDC 142


>gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928]
 gi|256357815|gb|ACU71312.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928]
          Length = 145

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVTLR 58
                AR  +  +L     + +    +L         +       + Q     +V   L 
Sbjct: 3   SPRSKARQRALEILFEADLRGVDPRTVLADTQARIRAQGPEGTIPQVQPYAATLVEGVLE 62

Query: 59  FLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
            + +ID +LD       L R     + +LR+ V ++L+  DV D  V+D AV  A+    
Sbjct: 63  HVDKIDDLLDEHSEGWALDRMPTVDRNVLRIGVYELLWQSDVPDAVVLDEAVSLARLMST 122

Query: 117 NRHFAKLVNSILRR 130
           +    + VN +L R
Sbjct: 123 DES-PQFVNGLLAR 135


>gi|222151417|ref|YP_002560573.1| transcription termination factor [Macrococcus caseolyticus
           JCSC5402]
 gi|254772646|sp|B9E6Q9|NUSB_MACCJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222120542|dbj|BAH17877.1| transcription termination factor [Macrococcus caseolyticus
           JCSC5402]
          Length = 130

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLP 61
           S   +R  +  +L  +           ++   D+   ++   ++      +V+  +    
Sbjct: 2   SRTESREHAIQILFQIE------NEAHEISVEDATRFIVEPPNRDVFADELVHGVISKQN 55

Query: 62  RIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   L S  L R     + +LR+S  ++LY D  +  +V+ AV  AK+  ++  +
Sbjct: 56  ELDDKITPHLKSWALERLNKIDRIILRLSAFELLYTDAPEKVIVNEAVNLAKKFSDDESY 115

Query: 121 A 121
            
Sbjct: 116 K 116


>gi|145636230|ref|ZP_01791900.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittHH]
 gi|145641684|ref|ZP_01797261.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
 gi|145270752|gb|EDK10685.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittHH]
 gi|145273731|gb|EDK13600.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.4-21]
          Length = 144

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +   +   E      + +   D+   R +   T+  + 
Sbjct: 11  SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +  +          +LR++V ++ + LDV    V++ A+E AK    +   
Sbjct: 68  TVDFSISPYIDRTFDELDPIETAILRLAVYELHFELDVPYKVVINEAIEVAKVFGADES- 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|325578284|ref|ZP_08148419.1| transcription termination/antitermination factor NusB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160020|gb|EGC72149.1| transcription termination/antitermination factor NusB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 145

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L        +   +   E      + L   D+     +   T+  + 
Sbjct: 12  SPRRRARECAVQALYSWALSGNAPEQV---ELTFVVDQDLKGVDKPYFSRLFRQTVANVE 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   L  +L       + +LR++V ++ +  DV     ++ A+E AK    +   
Sbjct: 69  AVDFSMSHYLDRALDELDPIERAILRLAVYELQFEPDVPYKVAINEAIEVAKVFGADES- 127

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 128 HKYINGVLDK 137


>gi|301156187|emb|CBW15658.1| transcription antitermination protein [Haemophilus parainfluenzae
           T3T1]
          Length = 145

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L        +   +   E      + L   D+     +   T+  + 
Sbjct: 12  SPRRRARECAVQALYSWALSGNAPEQV---ELTFVVDQDLKGVDKPYFSRLFRQTVANVD 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   L  +L       + +LR++V ++ +  DV     ++ A+E AK    +   
Sbjct: 69  SVDFSMSHYLDRTLDELDPIEKAILRLAVYELQFEPDVPYKVAINEAIEVAKVFGADES- 127

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 128 HKYINGVLDK 137


>gi|297195547|ref|ZP_06912945.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152840|gb|EDY65276.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 128

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
           +FD VLVD PCS  G +RR P+  W R   D+   A  QR+LL + +  V+ GG+V ++ 
Sbjct: 1   MFDRVLVDVPCSGLGALRRRPEARWRRRASDLEGFAPLQRELLREALKAVRVGGVVGYAT 60

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS    ++  VV+ VLR    P        A      +  AL     +++ P +      
Sbjct: 61  CSPHLAETRVVVEDVLRGRGGPAVEAEWVDARPLMPGVP-ALGDGPDVQLWPHL------ 113

Query: 426 VSSGMDGFFAVALRRLI 442
              G D  +   LRR  
Sbjct: 114 --HGTDAMYLALLRRTA 128


>gi|194752568|ref|XP_001958593.1| GF11004 [Drosophila ananassae]
 gi|190625875|gb|EDV41399.1| GF11004 [Drosophila ananassae]
          Length = 441

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 19/210 (9%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282
           Q+  + + V++       +VLD+CAAPG KT  +   +     V ALD SK R+  +R  
Sbjct: 212 QNLPSIVCVRVLDPQPGENVLDMCAAPGNKTTHIAELMGDQGCVMALDNSKSRVSTMRSK 271

Query: 283 LDRLHLYAEDIIEMDA----------FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           L+        + +                 P   FD +L+DAPCS  G   R       +
Sbjct: 272 LNNYRSIQLHVFDSTKAVDALATSISVPPFPCASFDRILLDAPCS--GLGNRPQLASKIK 329

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
               +      QR+L  Q +  ++ GG +V+S C++ + + E +V   L+  P  + LV 
Sbjct: 330 QPKVLQSYPNIQRRLFTQAVQLLRDGGTLVYSTCTVTEPECEGIVAWALKKFP-DLRLVD 388

Query: 393 LNSAYWKSIDMAMALSPEGWI---RITPDM 419
               +         L     +   R  P+ 
Sbjct: 389 ATPRWGGPGLPLEDLDASQSLMLQRFGPNK 418


>gi|254417847|ref|ZP_05031571.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3]
 gi|196184024|gb|EDX79000.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3]
          Length = 174

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +RL +   L  +      +  ++          D     L++ D+     IV   +    
Sbjct: 37  SRLAAVQALYQMELAGEGVETVITEFANFRFDTDIEGEALAEADEAYFADIVRGVIESQR 96

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
            ID  +   L     L R   +L+ LLR    +++ + +     V+D  VE AK    + 
Sbjct: 97  DIDTAIKARLASNWKLERIDATLRALLRSGAWELIKHPETPREVVIDEYVELAKAFF-DD 155

Query: 119 HFAKLVNSILR 129
             A+ VN+ L 
Sbjct: 156 SEARFVNAALD 166


>gi|332670495|ref|YP_004453503.1| NusB antitermination factor [Cellulomonas fimi ATCC 484]
 gi|332339533|gb|AEE46116.1| NusB antitermination factor [Cellulomonas fimi ATCC 484]
          Length = 138

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ +    LL     +        +       +V   +   
Sbjct: 1   MGARTKARKRALDVLFEADQRGLDPVTLLAQRVAEPGTEAALPQ---YSVDLVEGVIARR 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID +L       ++ R     + LLR+   +IL+  DV D   VD AVE A+    + 
Sbjct: 58  ERIDELLATHAHGWTIERMPAVDRALLRLGTWEILFNDDVPDAVAVDEAVELARSLSTDE 117

Query: 119 HFA 121
             +
Sbjct: 118 SPS 120


>gi|90415724|ref|ZP_01223658.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2207]
 gi|90333047|gb|EAS48217.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2207]
          Length = 146

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M        AR +    L      +     L+D+E        ++  D  L   I+    
Sbjct: 1   MSKPKMRQKARRLLVQALYSWDMGKT---DLIDIEAEFHVDNNMATVDTELFHEILFGVP 57

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
           + +  IDA  +  L     +     Q +LR+S  ++L+ +DV    V++  V  AK    
Sbjct: 58  KHMTEIDAAYEPYLDRDQDQLDPVSQAILRLSTYEMLHRIDVPYKVVINEGVNLAKTFGP 117

Query: 117 NRHFAKLVNSILRR 130
              F   +N IL R
Sbjct: 118 TDAFK-YINGILDR 130


>gi|17545430|ref|NP_518832.1| transcription antitermination protein NusB [Ralstonia solanacearum
           GMI1000]
 gi|17427722|emb|CAD14241.1| probable n utilization substance b homolog (protein nusb).
           transcription regulator [Ralstonia solanacearum GMI1000]
          Length = 161

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L   +  R     +          +  ++ D+    A+++  +R   
Sbjct: 22  SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 78

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +       L   +       +  L V   ++++  D+    V++ AVE AK       +
Sbjct: 79  TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGY 138

Query: 121 A 121
            
Sbjct: 139 K 139


>gi|159184647|ref|NP_354190.2| transcription antitermination protein NusB [Agrobacterium
           tumefaciens str. C58]
 gi|22095943|sp|Q8UG69|NUSB_AGRT5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|159139945|gb|AAK86975.2| Putative transcription antitermination protein NusB [Agrobacterium
           tumefaciens str. C58]
          Length = 165

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + +      + D    R+IV+  +R  
Sbjct: 23  AARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDTYLKADPSWFRSIVSGVVRDQ 82

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            +ID ++   L     L R   +++ +LR    +IL   DV    +V   VE A+   E+
Sbjct: 83  TKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPVAVIVTEYVEIARAFFEH 142

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 143 DE-PKLVNAVLDR 154


>gi|325276599|ref|ZP_08142341.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51]
 gi|324098278|gb|EGB96382.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51]
          Length = 166

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L      + SL  +      D+ F   +  D    R I++       
Sbjct: 26  AKRREARKLATQALYQWHMAQHSLNEIEAQFRVDNDF---TDVDGAYFREILHGVPAVKD 82

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   +  +L         +LR+S  +++  +DV    V++  VE AK        
Sbjct: 83  EIDKALAPCMTIALDELDPVELAVLRLSTWELIKRVDVPYRVVINEGVELAKVFGATDGH 142

Query: 121 A 121
            
Sbjct: 143 K 143


>gi|307197971|gb|EFN79048.1| Putative methyltransferase NSUN5 [Harpegnathos saltator]
          Length = 773

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 89/238 (37%), Gaps = 18/238 (7%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
                + +G   +QD ++ +   L       +VLDLCAAPG K+      + +   V A+
Sbjct: 202 HDHASYLDGQIVLQDKASCLSAHLLAPTEGSTVLDLCAAPGMKSTHLAAKLQNVGTVHAI 261

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           ++   R + L+  +D  H +  +    D    +    +    +LVD  CS +G I R   
Sbjct: 262 EIDSERFQTLQQQIDITHSFCVEPHNQDALTLNTKQFQNVRYILVDPSCSGSGIIDRPKQ 321

Query: 328 VLW--TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
                  +   +      Q  LL   +        VV+S CS+  +++E+VV +VL +  
Sbjct: 322 SDSDGKTEPRRLHNLQSIQVYLLRYALFNFPDVKRVVYSTCSVYPEENEQVVDEVLSNVG 381

Query: 386 IPVELV---PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               LV    +    W +         +  +   PD+            GFF     R
Sbjct: 382 DAYHLVSMKDILKEKWLNFSSPAYNCGDKCLYSKPDVDLCN--------GFFVAVFER 431


>gi|89895110|ref|YP_518597.1| hypothetical protein DSY2364 [Desulfitobacterium hafniense Y51]
 gi|219669523|ref|YP_002459958.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2]
 gi|119390768|sp|Q24UY9|NUSB_DESHY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772633|sp|B8FQ61|NUSB_DESHD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89334558|dbj|BAE84153.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539783|gb|ACL21522.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2]
          Length = 148

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR  +  +L  +     S   L    +  +    + +        +   TL   
Sbjct: 1   MSRRL-ARETALQVLFQLEMTGESQD-LKSAIHKWADEFAVPEGSIPFAEELAEGTLTHK 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  L+ +    SL R     + LLR++  +IL+  D+     ++ A+E AKR   + 
Sbjct: 59  EVIDENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAKRY-GSE 117

Query: 119 HFAKLVNSILRR 130
              K +N IL +
Sbjct: 118 ESGKFINGILDK 129


>gi|22095947|sp|Q8Y1H9|NUSB_RALSO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 155

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L   +  R     +          +  ++ D+    A+++  +R   
Sbjct: 16  SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +       L   +       +  L V   ++++  D+    V++ AVE AK       +
Sbjct: 73  TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGY 132

Query: 121 A 121
            
Sbjct: 133 K 133


>gi|300692261|ref|YP_003753256.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum PSI07]
 gi|299079321|emb|CBJ51993.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum PSI07]
          Length = 155

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L   +  R     +          +  ++ D+    A+++  +R   
Sbjct: 16  SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +       L   +       +  L V   ++++  D+    V++ AVE AK       +
Sbjct: 73  TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGY 132

Query: 121 A 121
            
Sbjct: 133 K 133


>gi|261856451|ref|YP_003263734.1| NusB antitermination factor [Halothiobacillus neapolitanus c2]
 gi|261836920|gb|ACX96687.1| NusB antitermination factor [Halothiobacillus neapolitanus c2]
          Length = 196

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L   +     +  L      D     + + D  L R IV         +D  
Sbjct: 64  ARERAVQALYQQILNHTPVDLLDAQFMED---AFMLKVDLELFRRIVRGVSANEESLDEA 120

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
              +L   L       Q +LR+   ++++  ++     ++ AVE AK         K +N
Sbjct: 121 YSPLLDRPLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYGATES-HKYIN 179

Query: 126 SILRR 130
            +L +
Sbjct: 180 GVLDK 184


>gi|302383000|ref|YP_003818823.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193628|gb|ADL01200.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC
           15264]
          Length = 176

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 8/123 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++                L++ D+     +V   ++   
Sbjct: 37  ARLAAVQALYQMELAGEGVETVITEFSNHRFDADIEGEPLAEADEAYFADVVRGVIQSQR 96

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            IDA +   L     L R   +L+ LLR    ++ +  DV    V+D  VE AK   +  
Sbjct: 97  EIDASVKARLASNWRLERLDATLRALLRCGAWELAHRTDVPKEIVIDEYVELAKAFFDEA 156

Query: 119 HFA 121
              
Sbjct: 157 EAK 159


>gi|148237721|ref|NP_001088881.1| putative methyltransferase NSUN4 [Xenopus laevis]
 gi|82179353|sp|Q5M7E3|NSUN4_XENLA RecName: Full=Putative methyltransferase NSUN4; AltName:
           Full=NOL1/NOP2/Sun domain family member 4
 gi|56788935|gb|AAH88687.1| LOC496225 protein [Xenopus laevis]
          Length = 406

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 29/260 (11%)

Query: 204 RLKELPESIVSLP-----GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                   I   P      F    +++ DA++ +PV      +  SVLDLCAAPGGKT  
Sbjct: 153 CFTFSRGDISRFPQSRSDCFGLLEYYLMDAASLLPVLALDIQHGHSVLDLCAAPGGKTLA 212

Query: 259 LIVSGAKVT--ALDVSKRRLEKLRCNLDRLHL------YAEDIIEMDAFDYCP--KKLFD 308
           L+ +       A D+S  R  +L   L           +   I   D   +       +D
Sbjct: 213 LLQTENCQYLAANDLSTSRSSRLHRVLHSYVPRDQRAEHKVRITSWDGRLWGDLEASTYD 272

Query: 309 AVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            VLVD PC++     +    ++     T         Q +LL+ G+  V+PGG VV+S C
Sbjct: 273 RVLVDVPCTTDRHSLLEEENNIFHRIRTKQRQMLPLLQTELLVSGLRAVRPGGEVVYSTC 332

Query: 367 SLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPDMLE 421
           SL +  +E VVQ+   L ++   V + P + + ++ +        +       + P +  
Sbjct: 333 SLSQLQNECVVQRAIELAATDHGVLVKPQDLSCFREVFKNTFNFFQDCRVGELVVPHLTA 392

Query: 422 KIDGVSSGMDGFFAVALRRL 441
                       F   L R+
Sbjct: 393 NFGP-------MFFCKLLRI 405


>gi|315125804|ref|YP_004067807.1| transcription termination factor [Pseudoalteromonas sp. SM9913]
 gi|315014318|gb|ADT67656.1| transcription termination factor [Pseudoalteromonas sp. SM9913]
          Length = 137

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR+++   +        ++  +      ++    +   D    + +      
Sbjct: 1   MKPAARRKARILALQAVYSWQLSGNAIADIEQQMLIENDVTKI---DVEYFKDLARGVAV 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ++D  +   L           + +LR+S  ++ +  DV     ++ ++E AK     
Sbjct: 58  NHKQLDEAVSPHLTRPFDELDEVERAILRLSSYELKFREDVPYKVAINESIELAK-MFGA 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 EDSHKFVNGVLDK 129


>gi|285019596|ref|YP_003377307.1| transcription termination factor NusB [Xanthomonas albilineans GPE
           PC73]
 gi|283474814|emb|CBA17313.1| putative transcription termination factor nusb protein [Xanthomonas
           albilineans]
          Length = 155

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
             +        +   ++     + A  +    D +    +V   L+    +DA L   L 
Sbjct: 29  QAIYAWQISGGNAQHVIAQFAHEQAHEI---ADLVYFENLVEGVLKHRAELDAALVGYLD 85

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            ++       + +LR++  ++LY +DV    V++ A+E AKR   + H    VN +L R 
Sbjct: 86  RTVEEVDAIERAVLRLAAYELLYRMDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 144

Query: 132 SREK 135
           + E 
Sbjct: 145 ALEW 148


>gi|33151658|ref|NP_873011.1| transcription antitermination protein NusB [Haemophilus ducreyi
           35000HP]
 gi|39931811|sp|Q7VNQ2|NUSB_HAEDU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33147879|gb|AAP95400.1| transcription termination factor [Haemophilus ducreyi 35000HP]
          Length = 137

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L      + S+  +   E      + +   D    R ++  T  
Sbjct: 1   MKVSPRRRARECAVQALYSWYISQNSIEEV---ELAFVTDQDMKGVDLPYFRKLLRGTAL 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
           ++  ID  +   L           + +LR++  ++ Y LDV    V++  +E AK    +
Sbjct: 58  YVEAIDHDIRPYLDRMENDVDPIERTILRLATYELKYELDVPYKVVINEGIEVAK-VFGS 116

Query: 118 RHFAKLVNSILRR 130
               K +N IL +
Sbjct: 117 DDSHKYINGILDK 129


>gi|33337956|gb|AAQ13600.1|AF169972_1 MSTP077 [Homo sapiens]
 gi|10438378|dbj|BAB15234.1| unnamed protein product [Homo sapiens]
          Length = 144

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 ++FD VLVDAPCS+  +          +            Q +LL   I  ++P
Sbjct: 1   MGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNLPLLQIELLRSAIKALRP 60

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-IRIT 416
           GGI+V+S C+L K ++++V+ ++L S    + +     A   S D   A + +   + + 
Sbjct: 61  GGILVYSTCTLSKAENQDVISEILNSHGNIMPMDIKGIARTCSHDFTFAPTGQECGLLVI 120

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           PD  +            +   L++
Sbjct: 121 PDKGKAWGP-------MYVAKLKK 137


>gi|332525525|ref|ZP_08401682.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2]
 gi|332109092|gb|EGJ10015.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2]
          Length = 159

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R ++   L   +        +         F    + D+    A+++  +    
Sbjct: 16  SARRRSREIALQGLYEWLISGADAGTIDAHMREQDGF---DKCDRAHFDALLHGCIAEAS 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +DAVL   +     +       +L +   ++ + L+V     ++ AVE AK        
Sbjct: 73  ALDAVLARHVDRRTNQLSPVEHAVLMIGAYELTHCLEVPYRVAINEAVELAKSFGGTDG- 131

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 132 HKYVNGVLDK 141


>gi|330721632|gb|EGG99649.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC2047]
          Length = 153

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             NAR ++   L        + + LL++E        + + D      +++        +
Sbjct: 19  RRNARRLAMQALYQWEL---ASSSLLEIEREFREDNNMQKVDADYFTELLHRVPTLKTEL 75

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122
           D  +  +L   +         +LR+S  ++L   DV    +++  VE AK         K
Sbjct: 76  DEQIKPLLDRDISELTPVELTILRLSGYELLKRPDVPYRVIINEGVELAKTFGATDG-HK 134

Query: 123 LVNSILRR 130
            VN IL +
Sbjct: 135 YVNGILDK 142


>gi|299067743|emb|CBJ38952.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum CMR15]
          Length = 155

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L   +  R     +          +  ++ D+    A+++  +R   
Sbjct: 16  SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +       L   +       +  L V   ++++  D+    V++ AVE AK       +
Sbjct: 73  TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGY 132

Query: 121 A 121
            
Sbjct: 133 K 133


>gi|227904097|ref|ZP_04021902.1| tRNA/rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|227868116|gb|EEJ75537.1| tRNA/rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 280

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R++P+ +     D ++     Q+ +L + I  +KPGG +++S C+   ++ EE+V  +
Sbjct: 1   MFRKNPEAIDYWSQDYVLTCQTRQKDILNEAIKMLKPGGSLIYSTCTFSPEEDEEIVSWL 60

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +      +    +N           A         +R  P                +A  
Sbjct: 61  VNDHDFSILDPHINDPRISLGHPEWADGNADLTKTLRFWPQDGIGEGQ--------YAAI 112

Query: 438 LRR 440
           L++
Sbjct: 113 LQK 115


>gi|154248201|ref|YP_001419159.1| NusB antitermination factor [Xanthobacter autotrophicus Py2]
 gi|154162286|gb|ABS69502.1| NusB antitermination factor [Xanthobacter autotrophicus Py2]
          Length = 163

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 10/142 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNV 55
           MK    ARL +   L  +   +  L  +L         + +      + D  L R +V  
Sbjct: 15  MKKS-AARLGAVQALYQMDLAQTPLNDILAEFESHWLGQEVEGVEFPEADVRLFRTVVEG 73

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAK 112
            L    RID ++D  L     L R +  L+ +LR    ++    DV    V+   V  A 
Sbjct: 74  VLNDQRRIDPMVDNALTKGWPLKRVEAVLRAVLRAGAFELSAKPDVPARVVITEYVNVAG 133

Query: 113 RDKENRHFAKLVNSILRRVSRE 134
               +R    +VN++L  ++ +
Sbjct: 134 AF-LDRDETGMVNAVLDALAHD 154


>gi|83746193|ref|ZP_00943247.1| N utilization substance protein B [Ralstonia solanacearum UW551]
 gi|207728164|ref|YP_002256558.1| n utilization substance protein b [Ralstonia solanacearum MolK2]
 gi|207744100|ref|YP_002260492.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum IPO1609]
 gi|300704874|ref|YP_003746477.1| antitermination factor [Ralstonia solanacearum CFBP2957]
 gi|83727159|gb|EAP74283.1| N utilization substance protein B [Ralstonia solanacearum UW551]
 gi|206591409|emb|CAQ57021.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum MolK2]
 gi|206595504|emb|CAQ62431.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
           solanacearum IPO1609]
 gi|299072538|emb|CBJ43888.1| antitermination factor (N utilization substance B) (transcriptional
           antiterminator) [Ralstonia solanacearum CFBP2957]
          Length = 155

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L   +  R     +          +  ++ D+    A+++  +R   
Sbjct: 16  SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +       L   +       +  L V   ++++  D+    V++ AVE AK       +
Sbjct: 73  TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCIDIPYKVVINEAVELAKTFGGVEGY 132

Query: 121 A 121
            
Sbjct: 133 K 133


>gi|160872402|ref|ZP_02062534.1| transcription antitermination factor NusB [Rickettsiella grylli]
 gi|159121201|gb|EDP46539.1| transcription antitermination factor NusB [Rickettsiella grylli]
          Length = 148

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K+   AR  +   +      + + + +        A   +   D      IV   L    
Sbjct: 11  KAKQRARRFAVQAIYQWQLTQETFSVIQTKFL---AQEEMKSVDTAYFTLIVQGILNDHE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D  L   +   L +       +LR+   ++L   ++    +++ A+E AK       +
Sbjct: 68  LLDRYLQSFVDRPLCQLDCVEWAILRLGTYELLNCSEIPYKVILNEAIELAKMFGATDSY 127

Query: 121 AKLVNSILRRVSREKIELLQ 140
              VN IL R++ +   +  
Sbjct: 128 K-YVNGILHRIAEKNRAIDC 146


>gi|218201052|gb|EEC83479.1| hypothetical protein OsI_28993 [Oryza sativa Indica Group]
          Length = 259

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                     ++         FD VL+DAPCS+ G   R          + +   A +QR
Sbjct: 96  PGRNNCSGGRVENSKGFLPNSFDRVLLDAPCSALGL--RPRLFAGEETLESLRNHATYQR 153

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++  Q +  V+PGG++V+S C+++  ++E +V+  L                   I  + 
Sbjct: 154 RMFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDKYKFLSLGSQHPKVGGPGIVGSF 213

Query: 406 ALS----PEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438
            LS     E W+      L +    SS +D  GFF    
Sbjct: 214 ELSTKKYTEEWLTKHESQLVQRFDPSSTLDTIGFFIAKF 252


>gi|241662317|ref|YP_002980677.1| transcription antitermination protein NusB [Ralstonia pickettii
           12D]
 gi|240864344|gb|ACS62005.1| NusB antitermination factor [Ralstonia pickettii 12D]
          Length = 155

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR ++   L   +  R     +++    D+  +  ++ D+    A+++  +R   
Sbjct: 16  SARRRARELALQGLYQWLLNRND-PGVVEAHLQDA--QGFNKADRAHFDALLHGAIREET 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +       L   +       +  L V   ++++  D+    V++ AVE  K       +
Sbjct: 73  TLTEAFTPYLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTKTFGGVEGY 132

Query: 121 A 121
            
Sbjct: 133 K 133


>gi|108804294|ref|YP_644231.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
 gi|119390815|sp|Q1AW09|NUSB_RUBXD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108765537|gb|ABG04419.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
          Length = 139

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  +  +L            L+      +    L          +V    R  
Sbjct: 1   MSRRT-ARKQAFFILYQSDVTGSPAEPLIGRW--RAYRGELED----YAERVVRGVERER 53

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            R+DAVLD V     + R     + +LR+++ ++L+  DV     V+ AVE AK      
Sbjct: 54  ERLDAVLDGVSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEE 113

Query: 119 HFA 121
             +
Sbjct: 114 APS 116


>gi|297182205|gb|ADI18376.1| tRNA and rRNA cytosine-c5-methylases [uncultured actinobacterium
           HF4000_04C13]
          Length = 243

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 97/259 (37%), Gaps = 20/259 (7%)

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
              + +E     L +         +     ++    G+ +       A+    V      
Sbjct: 1   MPDWLLERLVTDLGSDDALAALAAMNRPARAVARDDGYHQDRASQMVAA---LVVEDLDP 57

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
           +   VLDLCAAPGGK   +  +GA V A D+   RL  +  N +RL      +       
Sbjct: 58  SGEVVLDLCAAPGGKATAMAAAGASVVAADLRPSRLGLVADNAERLGHDMALVAADGRLP 117

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD VLVDAPC+  G +RR  D  W     D+ + A  Q  LL      V+PGG+
Sbjct: 118 PFRPGAFDRVLVDAPCTGLGVLRRRADARWRTGPADVEELADLQVDLLTAAAGLVRPGGL 177

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           + +S C+L   ++  V ++  R +   V   PL + +    D        G + + P  L
Sbjct: 178 LFYSVCTLTSAETSGVDRRF-REATGLVSGPPLGAPWRPYGDDGA-----GGL-LLPQDL 230

Query: 421 EKIDGVSSGMDGFFAVALR 439
           +                 R
Sbjct: 231 DSEG----------MAVFR 239


>gi|56964231|ref|YP_175962.1| transcription antitermination protein NusB [Bacillus clausii
           KSM-K16]
 gi|81600830|sp|Q5WF59|NUSB_BACSK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56910474|dbj|BAD65001.1| N utilization substance protein NusB [Bacillus clausii KSM-K16]
          Length = 133

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + ARL +   L  +    I++   ++    D                +V+ TL   
Sbjct: 1   MNRRV-ARLRAVQTLYQLTLIDINVDKAIENTLNDEEEPS------EFYNTLVHGTLEHQ 53

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  L   L   +L R  +  + + R+ + ++LYL D+     ++ A+E AK      
Sbjct: 54  DEIDGYLSENLKGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELAKAFGGTD 113

Query: 119 HFAKLVNSILRRVSREKIEL 138
              + +N +L       ++ 
Sbjct: 114 -AGRFINGVLSNSYDMAMKN 132


>gi|218682018|ref|ZP_03529619.1| transcription antitermination protein NusB [Rhizobium etli CIAT
           894]
          Length = 160

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + L      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAAWFRSIVSGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            R+D ++   L    +L R   +++ +LR  V +I    DV    +V   VE A+   E+
Sbjct: 78  VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFFED 137

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 138 DE-PKLVNAVLDR 149


>gi|241204015|ref|YP_002975111.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857905|gb|ACS55572.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 160

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + L      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADVAWFRSIVSGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            R+D ++   L    +L R   +++ +LR  V +I    DV    +V   VE A+    +
Sbjct: 78  VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFF-D 136

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 137 DDEPKLVNAVLDR 149


>gi|260222860|emb|CBA32850.1| N utilization substance protein B homolog [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 177

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +  R ++  +             S+ D +   A+++  +    
Sbjct: 33  SNRTRAREFALQGLYQSLVGRNAVDDIDPFT---RDLAGFSKADAVHFDALLHGCVAEAE 89

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +DA++   L   +         ++ +   ++ + LDV    V++  +E AK        
Sbjct: 90  ALDALITPALDRPMSEISPIEHAIMWIGAYEMKHCLDVPWRVVLNECIELAKEFGGTDGH 149

Query: 121 A 121
            
Sbjct: 150 K 150


>gi|68249964|ref|YP_249076.1| transcription antitermination protein NusB [Haemophilus influenzae
           86-028NP]
 gi|81335612|sp|Q4QKN1|NUSB_HAEI8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68058163|gb|AAX88416.1| N utilization substance protein B [Haemophilus influenzae 86-028NP]
          Length = 144

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +   +   E      + +   D+   R +   T+  + 
Sbjct: 11  SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTVENIE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +  +          +LR++V ++ + LDV    V++ A+E AK    +   
Sbjct: 68  TVDFSISPYIDRAFDELDPIETAILRLAVYELCFELDVPYKVVINEAIEVAKVFGADES- 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|319784157|ref|YP_004143633.1| transcription antitermination factor NusB [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170045|gb|ADV13583.1| transcription antitermination factor NusB [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 166

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +  +          + +      + D    RAI+   
Sbjct: 16  NKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAILAGV 75

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +     ID ++   L     L R   +L+ +LR  V +++   DV    +V   V+ AK 
Sbjct: 76  VENQKTIDPIIRQALTEDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVDIAKA 135

Query: 114 DKENRHFAKLVNSILRR 130
                   KLVN++L R
Sbjct: 136 FY-EEDEPKLVNAVLDR 151


>gi|115350870|ref|YP_772709.1| transcription antitermination protein NusB [Burkholderia ambifaria
           AMMD]
 gi|170702886|ref|ZP_02893730.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
 gi|171321369|ref|ZP_02910324.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
 gi|172059882|ref|YP_001807534.1| transcription antitermination protein NusB [Burkholderia ambifaria
           MC40-6]
 gi|122323813|sp|Q0BHJ8|NUSB_BURCM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689186|sp|B1YUJ1|NUSB_BURA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115280858|gb|ABI86375.1| NusB antitermination factor [Burkholderia ambifaria AMMD]
 gi|170132203|gb|EDT00687.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
 gi|171093347|gb|EDT38540.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
 gi|171992399|gb|ACB63318.1| NusB antitermination factor [Burkholderia ambifaria MC40-6]
          Length = 145

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      +R +++  L   +    +   +     G   +    + D+ L+ AI++  +R
Sbjct: 1   MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKELLDAILHGVIR 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +   L   L   + +     + +L ++  ++ +  +     +++ AVE AK    +
Sbjct: 58  EHATLIEALTPSLDRPVDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGS 117

Query: 118 RHFA 121
             + 
Sbjct: 118 DGYK 121


>gi|154343347|ref|XP_001567619.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134064951|emb|CAM43062.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 423

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 113/312 (36%), Gaps = 45/312 (14%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           ++  +    D  +  + E    +   +   +     +    +   +  F    +++ D +
Sbjct: 100 NSAEASSMADRGIHVNNEETLREEEVLAAASSDPLHQNGIIAKPPIDAFGIKAYYLLDYA 159

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           ++  V+        +VLD+CAAPGGK+  +    +   AL  ++ R ++       L  +
Sbjct: 160 SAHVVEQLQVGAFDTVLDMCAAPGGKSIAIAQFLSPDGALTCNETRADRCARLRRNLQEH 219

Query: 290 ------AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH----PDVLWTRDTDDIVK 339
                      + DA  +   + F  VLVDAPCSS   + +     P        +  V+
Sbjct: 220 VPVNYVPWRTTQRDAQTWYDPQTFSRVLVDAPCSSERHLLQQSGGLPLSCREWSEETTVQ 279

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            A  QR LL + I     GG +V+S CS+   +++ VV + L+ +   V +V  +S+   
Sbjct: 280 LAALQRVLLQRAIETCCVGGRIVYSTCSISPLENDGVVGEALQRTRCKVRIVKTSSSVTA 339

Query: 400 SIDMAMAL--SPEG--------------------------WIRITPDMLEKIDGVSSGMD 431
           + + ++    +  G                             + PD             
Sbjct: 340 AAESSVTPSTTANGAGESDASCAGACVSPTPTVLGEATAYGRLLLPDTCHGWGP------ 393

Query: 432 GFFAVALRRLIQ 443
             F   L ++ +
Sbjct: 394 -MFFCVLEKMAE 404


>gi|71654742|ref|XP_815984.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881082|gb|EAN94133.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 339

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 97/284 (34%), Gaps = 30/284 (10%)

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           + +      +  +            L       G         +  +   F    ++  D
Sbjct: 51  LWNRFCQLPFAKVMANMKRMDEESLLQVFRCQDGC------EVAPPASDAFNVKAYYPLD 104

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR------RLEKLRC 281
            ++++ V+         VLD+CAA GG +  +    +   AL V++       RL +   
Sbjct: 105 YASALVVEQLEVGAFDRVLDVCAAFGGNSIGIAQFLSADGALTVNEPNHERSARLRRNIR 164

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH----PDVLWTRDTDDI 337
                +     I + +A  +    ++  VLVDAPCS+     +     P           
Sbjct: 165 EYIPSNYVPVTITQRNAETWYAPSMYHRVLVDAPCSAERYFLQRDGGAPVSPKMWTEQTS 224

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           ++ +     LLL+ +   +PGG VV+S  SL   +++ VV+  LR +   VE+ P     
Sbjct: 225 LELSRRGCVLLLRALETCRPGGRVVYSTRSLSPLENDGVVEDALRRTRCQVEVHPTTLCN 284

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    +       + PD       +       F   + ++
Sbjct: 285 MGEKTRYGHI-------VLPDTAGGFGPL-------FCCVIHKV 314


>gi|255722339|ref|XP_002546104.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240136593|gb|EER36146.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 485

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 96/267 (35%), Gaps = 33/267 (12%)

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQL---FGTLNNLSVLDLCAAPGGKTAQLIVS- 262
              E I S   +  G   +QD ++  P  +        +  V+D CAAPG KT       
Sbjct: 194 HPREKITSTEAYKLGEIIIQDRASCFPSHILNSDPKDIHTQVIDACAAPGNKTTHAAAHL 253

Query: 263 ---GAKVTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDA--VLVD 313
               + V A +   +R++ L+   ++           I   D     P    D   ++VD
Sbjct: 254 PNSESVVYAFERDSKRVQILKTMCEKATGKNKKKLIQITHADFTTTKPDDFADVTGMVVD 313

Query: 314 APCSSTGTIRRHPDVLWTRDTDDI------VKSACFQRKLLLQGISFVKPGGI-VVFSNC 366
             CS +G   R  +  +     +        K + FQ  ++   +SF  P    VV+S C
Sbjct: 314 PSCSGSGIFGRALEDSYNEQESETVNTERLAKLSGFQFAIMKHALSF--PSARKVVYSTC 371

Query: 367 SLDKQDSEEVVQKVL-----RSSPIPVELVPLNSAYWKSIDMAMAL-----SPEGWIRIT 416
           S+  Q++E VV  +L     R     +    +    W+              PE   ++ 
Sbjct: 372 SVHVQENERVVIDLLSDPEVRKRGWTLATRDVVIPKWERRGFEDEFVKLTRDPEECKKLA 431

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLIQ 443
              + + +    G  GFFA    R ++
Sbjct: 432 GGCV-RANPKVDGGIGFFAACFVRQVE 457


>gi|187927756|ref|YP_001898243.1| transcription antitermination protein NusB [Ralstonia pickettii
           12J]
 gi|238691779|sp|B2U7E9|NUSB_RALPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187724646|gb|ACD25811.1| NusB antitermination factor [Ralstonia pickettii 12J]
          Length = 155

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L   +  R     +++    D+  +  ++ D+    A+++  +R    +   
Sbjct: 21  ARELALQGLYQWLLNRND-PGVVEAHLQDA--QGFNKADRAHFDALLHGAIREETTLTEA 77

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
               L   +       +  L V   ++++  D+    V++ AVE  K       + 
Sbjct: 78  FTPYLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTKTFGGVEGYK 133


>gi|114566114|ref|YP_753268.1| hypothetical protein Swol_0564 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|119390841|sp|Q0AZF7|NUSB_SYNWW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114337049|gb|ABI67897.1| NusB antitermination factor [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 134

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +  ++  V + +       D          L++++Q     ++  TL     
Sbjct: 2   SRRKARETAFKVVFQVDQVQADAKKAFDYLVLHDK---LAEKNQGFSWDLIQGTLEKQAE 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID ++       +L R     + ++RV+  +ILYL D      +D A+E AK+   +   
Sbjct: 59  IDQMIASYSREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAKKY-GDEGS 117

Query: 121 AKLVNSILRR 130
              VN+IL +
Sbjct: 118 GSFVNAILDK 127


>gi|323527047|ref|YP_004229200.1| NusB antitermination factor [Burkholderia sp. CCGE1001]
 gi|323384049|gb|ADX56140.1| NusB antitermination factor [Burkholderia sp. CCGE1001]
          Length = 144

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   F    + D   + AI++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAILHGVIRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A +   L   + +     + +L V+  ++  ++D+    V++ AVE AK      
Sbjct: 58  SEALSADIAPCLDRPIDQLSPVERAVLLVAAFELKNHIDIPYRVVINEAVELAKTFGGAD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|224044197|ref|XP_002190386.1| PREDICTED: NOL1/NOP2/Sun domain family, member 3 [Taeniopygia
           guttata]
          Length = 401

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-----DVSKRR 275
             +++ +A++ +PV      +  +VLDLCAAPGGK+  ++              D+  R 
Sbjct: 175 KDYYLLNAASLLPVLALEVKDGEAVLDLCAAPGGKSVAILQCACPGHFHCNEYDDLRSRW 234

Query: 276 LEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331
           LE+   +     L     + ++D       +   +D VLVDAPCS+  +           
Sbjct: 235 LEQTIESFIPAPLINLITVSKLDGRQIGDLQPEFYDKVLVDAPCSNDRSWLFSADPQQAV 294

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
                  + +  Q +LL   +  ++PGG +V+S C+L + ++ +V+  +L S    + + 
Sbjct: 295 LRLMQRKELSSLQFQLLRSAVQALRPGGSLVYSTCTLSRAENSDVINLILNSCRNVMPVD 354

Query: 392 PLNSAYWKSIDMAMALS-PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               A   S +        +  + + P+               +   L+++
Sbjct: 355 LSGMARGVSQEFTFLSGMQQHELLVLPEKGRAWGP-------MYVAKLKKV 398


>gi|91788748|ref|YP_549700.1| transcription antitermination protein NusB [Polaromonas sp. JS666]
 gi|119390795|sp|Q129J0|NUSB_POLSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91697973|gb|ABE44802.1| NusB antitermination factor [Polaromonas sp. JS666]
          Length = 187

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 5/133 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +  R     +         F    + D     A+++  +    
Sbjct: 46  SARTRAREFALQALYQHLVGRNDADSIDAFTRDLVGFH---KADSAHYDALLHGCIEGAS 102

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +DAV+  +L   +         +L +   +    LDV    V++  +E AK        
Sbjct: 103 ALDAVITPLLDRPMAEISPVEHAVLWMGAYEFRQCLDVPYRVVINECIELAKAFGGTDG- 161

Query: 121 AKLVNSILRRVSR 133
            K VN +L +++ 
Sbjct: 162 HKYVNGVLHKMAP 174


>gi|77919050|ref|YP_356865.1| transcription antitermination factor NusB [Pelobacter carbinolicus
           DSM 2380]
 gi|119390793|sp|Q3A4L2|NUSB_PELCD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77545133|gb|ABA88695.1| NusB antitermination factor [Pelobacter carbinolicus DSM 2380]
          Length = 156

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 19/154 (12%)

Query: 1   MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-------------LSQRD 45
           M SGM    R ++  ++        S+  LL   + +  FR              +++  
Sbjct: 1   MASGMRRTGRELAIKIIYSFDGTG-SVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPV 59

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAV 103
           +     +V      L +ID ++     + SL R       +LR++  ++L +LDV    +
Sbjct: 60  REFAEDLVRGVAENLEKIDGLIGEFSTNWSLERMARVDLAILRMATYELLGHLDVPVSVI 119

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           ++ AVE  KR    +     VN IL R+SR    
Sbjct: 120 INEAVEIGKRY-GTKETPSFVNGILDRISRTCRP 152


>gi|86357164|ref|YP_469056.1| transcription antitermination protein NusB [Rhizobium etli CFN 42]
 gi|119390805|sp|Q2KA07|NUSB_RHIEC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86281266|gb|ABC90329.1| transcription antitermination protein B [Rhizobium etli CFN 42]
          Length = 160

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + +      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGATYLKADAGWFRSIVSGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            R+D ++   L    +L R   +++ +LR  V ++L   DV    +V   VE A+    +
Sbjct: 78  VRLDPLIAVALQDDWALSRLDSTVRAILRAGVFELLDRKDVPVAVIVTEYVEIARAFF-D 136

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 137 DDEPKLVNAVLDR 149


>gi|88859180|ref|ZP_01133821.1| transcription termination factor [Pseudoalteromonas tunicata D2]
 gi|88819406|gb|EAR29220.1| transcription termination factor [Pseudoalteromonas tunicata D2]
          Length = 136

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR+++   +            + D+E        +S+ D    + +      
Sbjct: 1   MKPAARRKARILALQAIYSWQVSG---NAIADIEQQMLLENDISKIDVEYFKDLACGVAV 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
               +D +L   L        +  + +LR+S  ++ +  DV     ++  +E AK     
Sbjct: 58  QHKVLDVILSPHLARPYEDIDFVEKAILRLSAYELKFREDVPYKVAINEGIELAK-MFGA 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 EDSHKFVNGVLDK 129


>gi|332534974|ref|ZP_08410792.1| transcription termination protein NusB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035592|gb|EGI72084.1| transcription termination protein NusB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 136

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 7/137 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR+++   +            + D+E        +++ D    + +      
Sbjct: 1   MKPAARRKARILALQAVYSWQISG---NLIADIEQQMLIETDVTKIDVEYFKDLATGVAV 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ++D  +   L           + +LR+S  ++ +  DV     ++  +E AK     
Sbjct: 58  NYKQLDEAVSPHLTRPFDDLDMVERAILRLSSYELKFREDVPYKVAINEGIELAK-IFGA 116

Query: 118 RHFAKLVNSILRRVSRE 134
               K VN +L +  + 
Sbjct: 117 EDSHKFVNGVLDKAVKH 133


>gi|16273216|ref|NP_439455.1| transcription antitermination protein NusB [Haemophilus influenzae
           Rd KW20]
 gi|145629373|ref|ZP_01785171.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.1-21]
 gi|145633222|ref|ZP_01788953.1| transcription antitermination protein NusB [Haemophilus influenzae
           3655]
 gi|145638873|ref|ZP_01794481.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittII]
 gi|148827000|ref|YP_001291753.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittGG]
 gi|260581349|ref|ZP_05849165.1| transcription antitermination factor NusB [Haemophilus influenzae
           RdAW]
 gi|319776247|ref|YP_004138735.1| transcription antitermination protein [Haemophilus influenzae
           F3047]
 gi|319897123|ref|YP_004135318.1| transcription antitermination protein [Haemophilus influenzae
           F3031]
 gi|329123386|ref|ZP_08251950.1| transcription termination/antitermination factor NusB [Haemophilus
           aegyptius ATCC 11116]
 gi|1171874|sp|P45150|NUSB_HAEIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215691|sp|A5UF14|NUSB_HAEIG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|1574763|gb|AAC22951.1| N utilization substance protein B (nusB) [Haemophilus influenzae Rd
           KW20]
 gi|144978216|gb|EDJ87980.1| transcription antitermination protein NusB [Haemophilus influenzae
           22.1-21]
 gi|144986068|gb|EDJ92658.1| transcription antitermination protein NusB [Haemophilus influenzae
           3655]
 gi|145271845|gb|EDK11754.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittII]
 gi|148718242|gb|ABQ99369.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittGG]
 gi|260092016|gb|EEW75963.1| transcription antitermination factor NusB [Haemophilus influenzae
           RdAW]
 gi|309750850|gb|ADO80834.1| Transcription antitermination protein NusB [Haemophilus influenzae
           R2866]
 gi|317432627|emb|CBY80988.1| transcription antitermination protein [Haemophilus influenzae
           F3031]
 gi|317450838|emb|CBY87062.1| transcription antitermination protein [Haemophilus influenzae
           F3047]
 gi|327470968|gb|EGF16423.1| transcription termination/antitermination factor NusB [Haemophilus
           aegyptius ATCC 11116]
          Length = 144

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +   +   E      + +   D+   R +   T+  + 
Sbjct: 11  SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +  +          +LR++V ++ + LDV    V++ A+E AK    +   
Sbjct: 68  TVDFSISPYIDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|290961848|ref|YP_003493030.1| NusB family protein [Streptomyces scabiei 87.22]
 gi|260651374|emb|CBG74496.1| putative NusB-family protein [Streptomyces scabiei 87.22]
          Length = 144

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 3/132 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      +               +V       
Sbjct: 1   MAARNTARKRAFQILFEGDQRGADVLTVLADWIRHAHNDTRQPPVSEYTMQLVEGYSEHA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + +LR+   +++++D   D  V+D  V+ AK      
Sbjct: 61  RRIDELIAQYSVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAKEF-STD 119

Query: 119 HFAKLVNSILRR 130
                VN +L R
Sbjct: 120 DSPSFVNGLLGR 131


>gi|15602595|ref|NP_245667.1| transcription antitermination protein NusB [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431742|sp|P57868|NUSB_PASMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|12721025|gb|AAK02814.1| NusB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 144

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      + S   +   E    A + L   D    R +   T   + 
Sbjct: 11  SPRRRARECAVQALYSWYVSQNSPAEI---ELNFMAEQDLKGVDTAYFRRLFRQTAENVD 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D ++   L   +       + +LR++V ++ + LDV    V++ A+E AK        
Sbjct: 68  AVDNIMIPYLDREVSELDPIEKAILRLAVYELKFELDVPYKVVINEAIEVAK-VFGAEDS 126

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 127 HKYVNGVLDK 136


>gi|242078877|ref|XP_002444207.1| hypothetical protein SORBIDRAFT_07g014990 [Sorghum bicolor]
 gi|241940557|gb|EES13702.1| hypothetical protein SORBIDRAFT_07g014990 [Sorghum bicolor]
          Length = 585

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 9/175 (5%)

Query: 271 VSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           +SK  L K LR   +           ++         FD VL+DAPCS+ G   R     
Sbjct: 406 ISKAELRKNLRRMKNGPGRNNCSGGRVEKSKGFYPNSFDRVLLDAPCSALGL--RPRLFA 463

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
                + +   A +QR++  Q +  V+PGG++V+S C+++  ++E +V+  L +      
Sbjct: 464 GEETLESLKNHAKYQRRMFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDTYKYLSL 523

Query: 390 LVPLNSAYWKSIDMAMALS----PEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438
           +          I  +  L      E W+R     L +    SS +D  GFF    
Sbjct: 524 VSQYPKVGGPGIVGSCELFNMTYTEEWLREDEAELVQRFDPSSSVDTIGFFIAKF 578


>gi|170750376|ref|YP_001756636.1| NusB antitermination factor [Methylobacterium radiotolerans JCM
           2831]
 gi|170656898|gb|ACB25953.1| NusB antitermination factor [Methylobacterium radiotolerans JCM
           2831]
          Length = 197

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL     L  +      +   L         + +        +    R ++  T
Sbjct: 23  SPRSGARLAVVQALYEMDISGKGVLDALAEFEAFWIGQEVDGIAHPPAETAFFRDLLRGT 82

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
           +     ID  LD  L     L R +  L+ +LR    ++++  DV   A +   V+ A  
Sbjct: 83  VEEQRAIDPKLDQALAQGWPLRRIEIVLRAILRAGAYELMFRRDVPAAAAISEYVDVAHS 142

Query: 114 DKENRHFAKLVNSILRR 130
                    LVN++L R
Sbjct: 143 FY-TADEPGLVNAVLDR 158


>gi|167647006|ref|YP_001684669.1| transcription antitermination protein NusB [Caulobacter sp. K31]
 gi|167349436|gb|ABZ72171.1| NusB antitermination factor [Caulobacter sp. K31]
          Length = 153

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 12/139 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD--------SAFRLLSQRDQILVRAIV 53
           +    ARL     L  + +  + +  ++                   L+  D+     + 
Sbjct: 8   QPRSVARLAVVQALYQMEQSGVGVDAVVREFAEHRFDRDVDGPDTDRLAAADETFFAELA 67

Query: 54  NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQ 110
              +     +D  +   L     L R   + + +LR    ++++  DV    V+D  VE 
Sbjct: 68  KGVVAHQAAVDQAIVKRLASGWKLERLDATARAVLRSGAYELMHRPDVPTEVVIDEYVEI 127

Query: 111 AKRDKENRHFAKLVNSILR 129
           AK   E    +  +N  L 
Sbjct: 128 AKSFFEGPE-SGFINGALD 145


>gi|309780817|ref|ZP_07675558.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA]
 gi|308920499|gb|EFP66155.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA]
          Length = 155

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L   +  R     +++    D+  +  ++ D+    A+++  +R    +   
Sbjct: 21  ARELALQGLYQWLLNRND-PGVVEAHLQDA--QGFNKADRAHFDALLHGAIREETTLTEA 77

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
               L   +       +  L V   ++++  D+    V++ AVE  K       + 
Sbjct: 78  FTPYLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTKTFGGVEGYK 133


>gi|322515009|ref|ZP_08068019.1| transcription antitermination factor NusB [Actinobacillus ureae
           ATCC 25976]
 gi|322118998|gb|EFX91170.1| transcription antitermination factor NusB [Actinobacillus ureae
           ATCC 25976]
          Length = 163

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L      + S+  +   E      + ++  D    R ++  T+ 
Sbjct: 27  MKVSPRRRARECAVQALYSWYVSQNSVEEV---ELSFVTDQDMNGVDLPYFRKLLRSTVL 83

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
           ++  ID  L   L  +        + +LR+S  ++ Y LDV    V++  +E AK    +
Sbjct: 84  YIEAIDGALRPFLDRAEDEVDPIERTILRLSAYELKYELDVPYKVVINEGIEVAK-VFGS 142

Query: 118 RHFAKLVNSILRR 130
               K +N +L +
Sbjct: 143 GDSHKYINGVLDK 155


>gi|116251399|ref|YP_767237.1| transcription antitermination protein NusB [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|119390806|sp|Q1MIT2|NUSB_RHIL3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115256047|emb|CAK07128.1| putative N utilization substance protein B [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 160

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + +      + D    R+IV+  +R  
Sbjct: 18  AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGETYLKADAAWFRSIVSGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            R+D ++   L    +L R   +++ +LR  V +I    DV    +V   VE A+    +
Sbjct: 78  VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFF-D 136

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 137 DDEPKLVNAVLDR 149


>gi|27904889|ref|NP_778015.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|29427633|sp|P59452|NUSB_BUCBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27904287|gb|AAO27120.1| N utilization substance protein B [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 144

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K+   AR  +   L      +  +  +++    +     +   DQI    ++    + L 
Sbjct: 6   KTRRKAREYAVQALYSWQISKNDIYDVINHFKKNKTINEI---DQIYFYELIIGITKNLK 62

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHF 120
            +D ++   L  ++       + +LR+S  ++    D+     ++ ++E AK     +  
Sbjct: 63  YLDELMRPYLSRTIQELGQIEKAILRISFFELDKRYDIPFKVTINESIELAK-LFGAKDS 121

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 122 HKFINGVLDK 131


>gi|298291642|ref|YP_003693581.1| NusB antitermination factor [Starkeya novella DSM 506]
 gi|296928153|gb|ADH88962.1| NusB antitermination factor [Starkeya novella DSM 506]
          Length = 160

 Score = 86.5 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      L  +L           +        D  L R IV   +R  
Sbjct: 17  AARLNAVQALYQMDVAATPLADILAQFESHWIGHEIEGDEIASADVNLFRDIVGGVVREQ 76

Query: 61  PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
             ID VLD  L+    L R +  L+ +LR    ++    DV    VV   V  A     +
Sbjct: 77  LSIDPVLDAALVKGWPLKRIEAVLRAVLRAGAYELSERPDVPARVVVAEYVNVAAAF-LD 135

Query: 118 RHFAKLVNSILR 129
           R    +VN++L 
Sbjct: 136 REETGMVNAVLD 147


>gi|192359459|ref|YP_001983152.1| transcription antitermination protein NusB [Cellvibrio japonicus
           Ueda107]
 gi|190685624|gb|ACE83302.1| transcription antitermination factor NusB [Cellvibrio japonicus
           Ueda107]
          Length = 168

 Score = 86.5 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 6/131 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        SL  +      D+    +S+ D      +++     L 
Sbjct: 25  ATRRMARHYAMQALYQWHMAGSSLNAIEAEFRTDN---DMSKVDVDYFHELLHGVPEQLS 81

Query: 62  RIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
            ++      L   SL       + LLR++  ++   +DV    V++ AV  AK+      
Sbjct: 82  GLEEQFQPFLVDRSLEELDAITRALLRMATYELKNRIDVPYKVVINEAVSLAKKF-GAED 140

Query: 120 FAKLVNSILRR 130
             K +N +L +
Sbjct: 141 SHKFINGVLDK 151


>gi|221135088|ref|ZP_03561391.1| transcription antitermination protein NusB [Glaciecola sp.
           HTCC2999]
          Length = 145

 Score = 86.5 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +        ++  +   E   +    +S+ D    + ++  T +
Sbjct: 6   MKPAARRKARELALQGIYSWQMNGNTIESV---ELHLATTNDMSKIDLAFFQELLRDTAK 62

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
            +  +D  +   L           + +LR++  ++   +DV    V++ A+E AK     
Sbjct: 63  KVVELDVAIKPYLGRLPEELDPIEKAILRLATLELTQRIDVPYKVVINEAIELAKSF-GA 121

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 122 EESHKFVNGVLDK 134


>gi|269956498|ref|YP_003326287.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894]
 gi|269305179|gb|ACZ30729.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894]
          Length = 138

 Score = 86.5 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  ++ LL    ++R     LL              +       IV   +   
Sbjct: 1   MGARTKARKRAADLLFEAEQRRWDAVRLLRDRIETPVSESPVPQ---YAADIVEGVVAHR 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID +L+      ++ R     + LLR+   +IL+  DV D   +D AV+ A       
Sbjct: 58  ERIDELLETYSNGWTIERMPAVDRALLRIGAWEILFNDDVPDAVAIDEAVDLA-AQLSTD 116

Query: 119 HFAKLVNSILRR 130
                VN +L R
Sbjct: 117 DSPSFVNGLLGR 128


>gi|68475292|ref|XP_718364.1| hypothetical protein CaO19.10135 [Candida albicans SC5314]
 gi|68475493|ref|XP_718269.1| hypothetical protein CaO19.2604 [Candida albicans SC5314]
 gi|46440029|gb|EAK99340.1| hypothetical protein CaO19.2604 [Candida albicans SC5314]
 gi|46440128|gb|EAK99438.1| hypothetical protein CaO19.10135 [Candida albicans SC5314]
          Length = 498

 Score = 86.5 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 140/435 (32%), Gaps = 61/435 (14%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + A+V  TL++   ID +    +  S  +    ++++          +      ++   +
Sbjct: 74  IFALVYSTLKYKEYIDVI----VKKSKIQHDLQIKKV---------KMSNELLCLLVHDL 120

Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
             + + +       + ++ L   +R + E  +             ++L      +    I
Sbjct: 121 LFSSKGRIQSGKHPMKDAFLSNKTRLQAEFTKL---KLKYKVKSVDQLPTKEADDDETPI 177

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--------------RLKELPESIVS 214
               I+ + ID+   +    +  +L  V                           E I S
Sbjct: 178 RWFRINTIKIDIDRFYTKHPFFKQLQPVSSIDEITETGIIYSDDYIPNLFGVHPREKITS 237

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLIVS----GAKVT 267
              +  G   +QD ++  P  +        +  V+D CAAPG KT           + V 
Sbjct: 238 TEAYRLGEIIIQDRASCFPSHILNADPEDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVY 297

Query: 268 ALDVSKRRLEKLRCNLDR----LHLYAEDIIEMDAFDYCPKKLFDAV--LVDAPCSSTGT 321
           A +   +R++ L+   ++           +   D     P+   D    ++D  CS +G 
Sbjct: 298 AFERDSKRVKILKTMCEKATGKTKKKLIQVTHADFTTTKPEDFPDVTGLVIDPSCSGSGI 357

Query: 322 IRRHPDVLWTRDTDDI------VKSACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSE 374
             R  +     +  +        K A FQ  ++   +SF  P    VV+S CS+  Q++E
Sbjct: 358 FGRALEDSHNEEEIENVNTERLNKLAGFQFAIMKHALSF--PSARKVVYSTCSIHAQENE 415

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---------TPDMLEKIDG 425
            VV  +L    +      L                E +I+I               + + 
Sbjct: 416 RVVVDLLSDPEVNRRGWKLADREIVLPKWDRRGFEEEFIKISRDPKECARLAGGCVRANP 475

Query: 426 VSSGMDGFFAVALRR 440
              G  GFF     R
Sbjct: 476 KEDGGIGFFTACFVR 490


>gi|332559221|ref|ZP_08413543.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N]
 gi|332276933|gb|EGJ22248.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N]
          Length = 148

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     ++  +                 +++ D    RAIV+ 
Sbjct: 1   MKS--ASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDEMAEGDAKSFRAIVSG 58

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +     ID + D  L     + R    ++ L R + +++L  +     V++  V+ AK 
Sbjct: 59  AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESETPPKVVINEFVDIAKA 118

Query: 114 DKENRHFAKLVNSILRRV 131
                   K VN++L  +
Sbjct: 119 FFPEGREPKFVNAVLDHM 136


>gi|254465261|ref|ZP_05078672.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium Y4I]
 gi|206686169|gb|EDZ46651.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium Y4I]
          Length = 160

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVTLR 58
              ARL +   L  + +   +   ++                +++ D  + R +V   + 
Sbjct: 17  RSAARLYALQALFQMEQSGQTFDQVIVEFEDHRFGAVYEGDEMAEGDTKVFRKLVREAVN 76

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
           +  RID + D  L     + R   +L+ L R + A++   D     V++  V+ A+    
Sbjct: 77  YQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSDTPPKVVINEFVDIARAFFP 136

Query: 117 NRHFAKLVNSILRRV 131
                K VN++L  +
Sbjct: 137 EGKEPKFVNAVLDHM 151


>gi|329770465|ref|ZP_08261844.1| transcription antitermination factor NusB [Gemella sanguinis M325]
 gi|328836320|gb|EGF85986.1| transcription antitermination factor NusB [Gemella sanguinis M325]
          Length = 131

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R     +L  V    +    LL+ E  D +           V   ++      
Sbjct: 1   MKSRHELRESVFKILFQVENTDLDYRELLEFEVDDVSGSE-------YVTRTLDDIFAKK 53

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +ID ++   L    L R     +Q+LR+S  +IL+ D+     ++ AVE +K+  E   
Sbjct: 54  EQIDEIISNNLKGWKLERLSKMDRQILRISTYEILFTDIPYKVSINEAVELSKKYSEKDD 113

Query: 120 FAKLVNSILR 129
             K +N +L+
Sbjct: 114 SYKFINGVLK 123


>gi|260434089|ref|ZP_05788060.1| transcription antitermination factor NusB [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417917|gb|EEX11176.1| transcription antitermination factor NusB [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 160

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   ARL +   L  + +   +   +++               + + D  L R +V+ 
Sbjct: 16  MKS--AARLYAVQALFQMEQSGQTTEQVVNEFLDHRFGAVYEGDEMLEGDSALFRKLVDD 73

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +   ID + D  L     + R   +L+ L R + A++   D     V+   V+ A+ 
Sbjct: 74  AVNYQAPIDQMTDRALVAKWPISRIDPTLRALFRAAGAELSQSDTPPKVVITEFVDVARA 133

Query: 114 DKENRHFAKLVNSILRRV 131
                   K VN++L  +
Sbjct: 134 FFPEGKEPKFVNAVLDHM 151


>gi|57233932|ref|YP_181990.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
 gi|119390764|sp|Q3Z709|NUSB_DEHE1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|57224380|gb|AAW39437.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
          Length = 143

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +    AR +    L        +   +L     ++     +      +  + N  ++ 
Sbjct: 1   MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTETPQTEENAE---FIFRLTNAIVKH 57

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              +D  +        + +  Y  + +LR+++ +I++  DV     ++ AVE AK    N
Sbjct: 58  KDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINEAVELAKSFGGN 117

Query: 118 RHF 120
              
Sbjct: 118 SSA 120


>gi|307730712|ref|YP_003907936.1| NusB antitermination factor [Burkholderia sp. CCGE1003]
 gi|307585247|gb|ADN58645.1| NusB antitermination factor [Burkholderia sp. CCGE1003]
          Length = 144

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   F    + D   + AI++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAILHGVIRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A +   L   + +     + +L V+  ++  ++D+    V++ AVE AK      
Sbjct: 58  SEALSADIAPCLDRPIDQLSPVERAVLLVAAFELKNHIDIPYRVVINEAVELAKTFGGAD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|260582481|ref|ZP_05850272.1| transcription antitermination factor NusB [Haemophilus influenzae
           NT127]
 gi|260094461|gb|EEW78358.1| transcription antitermination factor NusB [Haemophilus influenzae
           NT127]
          Length = 144

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +   +   E      + +   D+   R +   T+  + 
Sbjct: 11  SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTVENIE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +  +          +LR++V ++ + LDV    V++ A+E AK    +   
Sbjct: 68  TVDFSISPYIDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|52425030|ref|YP_088167.1| transcription antitermination protein NusB [Mannheimia
           succiniciproducens MBEL55E]
 gi|81609560|sp|Q65TX8|NUSB_MANSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52307082|gb|AAU37582.1| NusB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 143

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      +  +  +   E      + +   D    R +   T+  +P
Sbjct: 10  SPRRRARECAVQALYSFQISQNPVETV---ELSFVTDQDMKGVDMPYFRKLFRQTVENIP 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D+ +   L  S        + +LR++V ++ Y LDV    V++ A+E AK        
Sbjct: 67  SVDSTMAPYLDRSANELDPIEKAILRLAVYELKYELDVPYKVVINEAIEVAKTF-GAEDS 125

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 126 HKYINGVLDK 135


>gi|257215910|emb|CAX83107.1| Putative methyltransferase C17D4.04 [Schistosoma japonicum]
          Length = 367

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 47/229 (20%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------------------L 259
              Q+A + +P  L    ++ ++LDLCAAPG K+AQ                        
Sbjct: 139 ISRQEAVSMLPPLLLDIRSHHTILDLCAAPGSKSAQLVELLHSDAEAILSKSDSESAPKY 198

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---------------- 303
           I     V A DV +RR   +   + RL      I + DA  +                  
Sbjct: 199 IEPTGMVIANDVDQRRCYMMVHQVKRLQSPCVVITQEDASCFPRLYLTLSSDEMTGQRDL 258

Query: 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGG-- 359
            + +FD VL D PCS  GT+R++PD+      +  +     Q ++L +G+  ++ P G  
Sbjct: 259 RQLVFDRVLADVPCSGDGTLRKNPDLWLRWSPNLGIGEHPLQCRILKRGLELLRDPVGDS 318

Query: 360 ----IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
                +V+S CS +  ++E VV  +L++    V L+          D +
Sbjct: 319 TNYSRLVYSTCSFNPVENEAVVASILQACRGAVRLIEPELLECVLPDPS 367


>gi|301170042|emb|CBW29646.1| transcription antitermination protein [Haemophilus influenzae
           10810]
          Length = 144

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        +   +   E      + +   D+   R +   T+  + 
Sbjct: 11  SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMEGVDKPYFRKLFRQTIENIE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +  +          +LR++V ++ + LDV    V++ A+E AK    +   
Sbjct: 68  TVDFSISPYIDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|114332465|ref|YP_748687.1| NusB antitermination factor [Nitrosomonas eutropha C91]
 gi|122312909|sp|Q0AD60|NUSB_NITEC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114309479|gb|ABI60722.1| NusB antitermination factor [Nitrosomonas eutropha C91]
          Length = 167

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++   +        +   +   +         S+ D      ++   L     ++A 
Sbjct: 26  SRELALQGIYQWRLAGGNAQEI---DLQLQQVNFYSKADGSYFSDLLQGVLEHSRDLEAQ 82

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +   L   L         +L +   ++++  ++   A+++ A+E AK         K VN
Sbjct: 83  IQAYLDRQLAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIELAKSYGGTDG-HKYVN 141

Query: 126 SILRR 130
            +L +
Sbjct: 142 GVLDK 146


>gi|308048552|ref|YP_003912118.1| NusB antitermination factor [Ferrimonas balearica DSM 9799]
 gi|307630742|gb|ADN75044.1| NusB antitermination factor [Ferrimonas balearica DSM 9799]
          Length = 136

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +            + D+E+     +     D    R ++   + 
Sbjct: 1   MKPSERRKARRLAVQAIYSWQMSG---NAVADIEHEFLTEQDTKGADLGYFRELLVGVVS 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
               +DA L   L   +         +LR++  ++L+  DV    V++ A+E AK     
Sbjct: 58  QSSNLDARLKPNLARLVEEVDQLELAILRLAAFELLHRDDVPYKVVINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 EESHKFVNGVLDK 129


>gi|328543540|ref|YP_004303649.1| transcription antitermination protein NusB [polymorphum gilvum
           SL003B-26A1]
 gi|326413284|gb|ADZ70347.1| transcription antitermination protein NusB [Polymorphum gilvum
           SL003B-26A1]
          Length = 171

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +     SLT +++        + L      + D++  + +V   
Sbjct: 17  NKRGAARLGAVQALYQMDIGGASLTDVVNEFTAFRLGKELDGAQYREADELWFKDVVKGV 76

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +    ++D  +   L     L R    L+ +LR    ++L   DV    ++   ++ AK 
Sbjct: 77  VEEQRKLDPFIHTALVEDWPLRRIDSLLRAILRAGAYELLRRRDVPARVIISEYIDVAKA 136

Query: 114 DKENRHFAKLVNSILRRVSR 133
                   +LVN +L R++ 
Sbjct: 137 FYAEDE-PRLVNGVLDRLAH 155


>gi|148272974|ref|YP_001222535.1| putative antitermination protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166215681|sp|A5CRY5|NUSB_CLAM3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147830904|emb|CAN01848.1| putative antitermination protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 137

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +  S+   L +E   +A     Q      R I    +   
Sbjct: 1   MSARTKARKRALDVLYVADIRGESIPATLAVEQQRAAAEPDRQASWQYAREIAEGFVAHQ 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID +++      +L R     + +LR+ + +IL+  DV     +  +V+ A       
Sbjct: 61  DEIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPHGVAISESVDLA-SSLSTD 119

Query: 119 HFAKLVNSILRR 130
             A  VN +L R
Sbjct: 120 ESASFVNGMLAR 131


>gi|297713054|ref|XP_002833030.1| PREDICTED: putative methyltransferase NSUN5-like [Pongo abelii]
          Length = 117

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 14/115 (12%)

Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
               +   A FQ++ L   ++F  ++    +V+S CSL ++++E+VV+  L+ +P    L
Sbjct: 15  SPARLHALAGFQQRALCHALTFPSLQ---QLVYSTCSLCREENEDVVRDALQQNPGAFRL 71

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
            P   A W    ++     E  +R +P+             GFF   + R+  P+
Sbjct: 72  APALPA-WPHRGLSTFPGAEHCLRASPETTLSG--------GFFVAVIERVEVPR 117


>gi|190409023|gb|EDV12288.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|256269492|gb|EEU04780.1| YNL022C-like protein [Saccharomyces cerevisiae JAY291]
 gi|290770995|emb|CAY82164.2| EC1118_1N18_0045p [Saccharomyces cerevisiae EC1118]
 gi|323335784|gb|EGA77064.1| YNL022C-like protein [Saccharomyces cerevisiae Vin13]
          Length = 490

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 104/351 (29%), Gaps = 75/351 (21%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209
            W +      +       +         + +      + W+  +   +     I      
Sbjct: 154 RWIRINPLKCHPNGETEPVLAELRKKFTLKV------DKWSELVPGSIYYDEFIPNLFGI 207

Query: 210 ES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------- 259
                I +   +  G   +QD ++  P  +     +  V+D C+APG KT          
Sbjct: 208 HPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPE 267

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFD---AVLVD 313
               +  ++ A +    R + L+  +          +   D       + +      +VD
Sbjct: 268 PPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEKYKDVTCFIVD 327

Query: 314 APCSSTGTIRRHPDVLWTRD-------------------------TDDIVKSACFQRKLL 348
             CS +G   R     + R                             + K + FQ +++
Sbjct: 328 PSCSGSGIFGRKFFDSFNRRKIDDKDDDGDIVPDEQEEFIAKEELQTRLAKLSSFQFQMV 387

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI---------PVELVPLNSAYWK 399
              +SF      +V+S CS+  +++E VV  +L    +           E++P      K
Sbjct: 388 KHAMSFPAAK-KIVYSTCSIHAEENERVVIDLLLDKSVREWGWKVAPKREVIPSWPRRGK 446

Query: 400 SIDMAMALSP----------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +                 EG IR  P         S G  GFFAV   R
Sbjct: 447 VEEFEEVFRDGVTYDPQQLAEGCIRALP--------KSDGGIGFFAVCFER 489


>gi|325107333|ref|YP_004268401.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
 gi|324967601|gb|ADY58379.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
          Length = 137

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 7/138 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRF 59
           M     AR ++  +L  V         +            L    Q      +   T+  
Sbjct: 1   MAKRSKARELAMQMLFLVDMN----PDIDGKTVLHMIQDRLEDEQQSRFAWTLFAGTMEH 56

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              ID  +  V  + +L R   + + LLR+   ++ Y D     V+D  +E AK+     
Sbjct: 57  RETIDDRISKVAKNWTLKRMAVTDRNLLRLGCFELDYHDTPHTVVIDEIIELAKKF-GAE 115

Query: 119 HFAKLVNSILRRVSREKI 136
           + +  VN IL +++ +  
Sbjct: 116 NSSSFVNGILDKLAGQSH 133


>gi|212638784|ref|YP_002315304.1| transcription antitermination protein NusB [Anoxybacillus
           flavithermus WK1]
 gi|212560264|gb|ACJ33319.1| Transcription termination factor [Anoxybacillus flavithermus WK1]
          Length = 152

 Score = 86.1 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    I     +     +             +  +V   +   
Sbjct: 25  MK-RHTAREKALQALFQIDVGGIEPHEAVANVIEEETD--------PFMEMLVFGVVEHQ 75

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID +L   L   +L R     + +LR++V ++ Y+ D+     +D A+E AK    + 
Sbjct: 76  KEIDDLLRQHLEKWTLERVANVDRSILRMAVFEMKYMDDIPLSVSMDEAIELAK-VFGDE 134

Query: 119 HFAKLVNSILRR 130
             ++ +N +L +
Sbjct: 135 KSSRFINGVLAK 146


>gi|261405951|ref|YP_003242192.1| NusB antitermination factor [Paenibacillus sp. Y412MC10]
 gi|329924770|ref|ZP_08279759.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5]
 gi|261282414|gb|ACX64385.1| NusB antitermination factor [Paenibacillus sp. Y412MC10]
 gi|328940435|gb|EGG36758.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5]
          Length = 152

 Score = 86.1 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR---D----QILVRAIV 53
           MK  + AR +    L  +    +     + +   ++A    ++R   D    +  V  +V
Sbjct: 1   MKRRV-AREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGDEVQMKEYVLQLV 59

Query: 54  NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
           N T      ID +L   L    + R     +Q+LR++V ++ Y  DV     V+ A+E +
Sbjct: 60  NGTWESKDSIDELLAHYLKGWQVSRLSRVDRQILRLAVYELTYRDDVPGKVAVNEAIELS 119

Query: 112 KRDKENRHFAKLVNSILRRVSR 133
           K         K VN +L R+ +
Sbjct: 120 K-HFGTEESGKFVNGVLGRMIQ 140


>gi|239932425|ref|ZP_04689378.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440791|ref|ZP_06580181.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343686|gb|EFE70642.1| transcription antitermination protein NusB [Streptomyces ghanaensis
           ATCC 14672]
          Length = 144

 Score = 86.1 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      S               +V       
Sbjct: 1   MAARNTARKRAFQILFEGDQRGADVLTVLADWIRHSRTDTRQPPVSEYTMQLVEGYAEHA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + +LR+   ++L++D   D  V+D  V+ AK    + 
Sbjct: 61  QRIDGLIAQYSVGWTLDRMPVVDRSILRLGAYELLWVDETPDAVVLDEMVQLAKEFSTDE 120

Query: 119 HFA 121
             +
Sbjct: 121 SPS 123


>gi|24213164|ref|NP_710645.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Lai str. 56601]
 gi|32171656|sp|Q8F8T8|NUSB_LEPIN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|61214188|sp|Q72V97|NUSB_LEPIC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24193877|gb|AAN47663.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 138

 Score = 86.1 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   +R ++   L  +   +  L  +L  ++ D         ++    +IVN  ++  
Sbjct: 1   MSARRTSREIAVMALYQLELTQPPLKEVLKFKWYDKKT---EPEERDFAVSIVNGVVKNQ 57

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            +ID ++     +    R     + +LR+S+  +LY  +V     +D AVE  K  +   
Sbjct: 58  EQIDTLIKKYSKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEE 117

Query: 119 HF 120
             
Sbjct: 118 SA 119


>gi|28867922|ref|NP_790541.1| N utilization substance protein B [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|32171596|sp|Q889Q5|NUSB_PSESM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28851158|gb|AAO54236.1| N utilization substance protein B [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 165

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVAINQT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALTPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 141 HKFVNGVLDK 150


>gi|213515080|ref|NP_001134598.1| NOL1/NOP2/Sun domain family, member 4 [Salmo salar]
 gi|209734568|gb|ACI68153.1| methyltransferase NSUN4 [Salmo salar]
          Length = 398

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG--AKVTAL 269
                 +    +++ DA++ +P          SVLD+CAAPGGKT  L+ +     +   
Sbjct: 158 PSRPDLYGMLGYYLMDAASVLPALALDVQEGHSVLDVCAAPGGKTLALLQTQAIRFLCVN 217

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCS---S 318
           D+S  R  +L+  L+          E         + +        D VLVD PC+    
Sbjct: 218 DISVSRTYRLQRVLNSYVPKELLTEERMRITSFDGRKWGEIERDTFDRVLVDVPCTTDRH 277

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
           +     +      R   +  +    Q +LLL GI  V+PGG V++S CSL +  +E VV+
Sbjct: 278 SAMEDENNIFKRARTK-ERQRLPQLQTELLLAGIEAVRPGGQVLYSTCSLSQLQNEYVVE 336

Query: 379 KVL----RSSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433
           + +        I +++V L        D    A  P     + P +      +       
Sbjct: 337 RAMHLAREEHGISLQVVDLRPITRLFKDTFHFAPDPHLGQLVLPHLTANFGPI------- 389

Query: 434 FAVALRRL 441
           +   L+RL
Sbjct: 390 YMCKLQRL 397


>gi|94496077|ref|ZP_01302655.1| NusB antitermination factor [Sphingomonas sp. SKA58]
 gi|94424256|gb|EAT09279.1| NusB antitermination factor [Sphingomonas sp. SKA58]
          Length = 148

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56
           KS   ARL +   L  +  +   L  LL   +       +        ++     IV   
Sbjct: 6   KSRSAARLAAVQALYQLEMEGTPLASLLHEFHQHRLGATIEDVTYAQAEESFFDDIVTGV 65

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
            +    IDA++   L    S+ R    ++Q+LR    ++L   DV    V+   V+ A  
Sbjct: 66  DKRRAEIDALVAARLSSGWSMDRLDKPMRQILRAGTYELLARKDVGTGTVISEYVDVAHA 125

Query: 114 DKENRHFAKLVNSILR 129
              ++  A  VN +L 
Sbjct: 126 FY-DKREAGFVNGLLD 140


>gi|254576939|ref|XP_002494456.1| ZYRO0A01892p [Zygosaccharomyces rouxii]
 gi|238937345|emb|CAR25523.1| ZYRO0A01892p [Zygosaccharomyces rouxii]
          Length = 465

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 33/265 (12%)

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---- 262
              E I S   + +G   +QD ++ +P  +        V+D CAAPG KT  L       
Sbjct: 203 HPSEKITSHDLYKQGKVIIQDRASCLPAHILNPGKEDVVMDACAAPGNKTTHLAAHIISA 262

Query: 263 -------GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC-PKKLFD--AVL 311
                   A++ A +    R + L+    +    +   I   D      P +  D  A L
Sbjct: 263 AGDSNGGQAQIHAFEKEPARAKVLQKMTSQAGCGSLVKIHVGDFTRLAVPDQFEDVTAAL 322

Query: 312 VDAPCSSTGTIRRH-----PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-VVFSN 365
           VD  CS +G   R       D    +  D + K + FQ +++   +S   P    +V+S 
Sbjct: 323 VDPSCSGSGIFGRKSLESSNDSQDQKLQDRLSKLSSFQFQVVKHAMSM--PNARKIVYST 380

Query: 366 CSLDKQDSEEVVQKVLRSSPIPV---------ELVPLNSAYWKSIDMAMALSPEGWI-RI 415
           CS+  +++E VV  +L  S +           E+VP       + +       +    ++
Sbjct: 381 CSVHAEENERVVIDLLLDSKVKEWGWQLSPRSEVVPTWPRRGIAEEFEEVFRDDKPKCQL 440

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
             +   +      G  GFFAV  +R
Sbjct: 441 LAESCIRALPREDGGIGFFAVCFQR 465


>gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 422

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRF 59
           M++   AR ++   L  +          +D     +A     + D       +V      
Sbjct: 1   MRNRTIARELAIKALYQLDLLGDKAETEIDEFCRQNA----EKPDIYKFALLLVTGCRSH 56

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
           +  ID  +     +  L R     + +LR+ V ++LY  D+     ++ A+E AK+   +
Sbjct: 57  VKEIDERISLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAKKF-GD 115

Query: 118 RHFAKLVNSILRRVSR 133
           +     VN IL +V  
Sbjct: 116 KDSGMFVNGILDKVYN 131


>gi|220929324|ref|YP_002506233.1| NusB antitermination factor [Clostridium cellulolyticum H10]
 gi|254772626|sp|B8I3B0|NUSB_CLOCE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219999652|gb|ACL76253.1| NusB antitermination factor [Clostridium cellulolyticum H10]
          Length = 145

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              +R  +  LL  +  ++      +++   D     L++ D+  ++ IV+      P +
Sbjct: 3   RRASRETAMKLLYQLEIQKTDRDEQINMALED---ESLTKNDREYIKGIVDGVYEKTPVL 59

Query: 64  DAVLDF-VLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D +++       + R       +LR+ + +ILY  D+     V+ AVE AK+   N    
Sbjct: 60  DGIIEKKATGWKINRLSKIDLSVLRIGIYEILYRDDIPFSVSVNEAVELAKKY-SNEDAG 118

Query: 122 KLVNSILRR 130
             VN +L +
Sbjct: 119 AFVNGLLAK 127


>gi|126463172|ref|YP_001044286.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|221640214|ref|YP_002526476.1| NusB antitermination factor [Rhodobacter sphaeroides KD131]
 gi|126104836|gb|ABN77514.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029]
 gi|221160995|gb|ACM01975.1| NusB antitermination factor [Rhodobacter sphaeroides KD131]
          Length = 157

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     ++  +                 +++ D    RAIV+ 
Sbjct: 10  MKS--ASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDEMAEGDAKSFRAIVSG 67

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +     ID + D  L     + R    ++ L R + +++L  +     V++  V+ AK 
Sbjct: 68  AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESETPPKVVINEFVDIAKA 127

Query: 114 DKENRHFAKLVNSILRRV 131
                   K VN++L  +
Sbjct: 128 FFPEGREPKFVNAVLDHM 145


>gi|326437848|gb|EGD83418.1| hypothetical protein PTSG_04026 [Salpingoeca sp. ATCC 50818]
          Length = 301

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 29/234 (12%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVS---KRRL 276
           +++ D ++  P           VLD+CAAPGGK+  L         +T+ D S   + RL
Sbjct: 83  YYLMDGASIFPALALDVEEGDCVLDMCAAPGGKSLILAEHLGDRGLLTSNDPSAARRARL 142

Query: 277 EKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRH----PDV 328
            ++       H++A  +         ++   +  FD +L+DAPCSS     +H       
Sbjct: 143 GRVLREYIPAHIHAACVQVTGHDGAKWNRFEQNAFDKILLDAPCSSDRQHVQHVLEESKQ 202

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
           L       I ++A  Q  +L+  I  V+ GG +V+S C+L   +++ V+ +VL+     +
Sbjct: 203 LKEWSGSRIKQNAKRQEDMLVAAIDIVRVGGRIVYSTCALSGYENDRVIHRVLKRRKDQI 262

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           ++V       +  +  +    +  + I PD  +            F   L R+ 
Sbjct: 263 KVV-------QPQEPVVGDKTKYGVHILPDSTQWGPI--------FYAVLERVA 301


>gi|172056940|ref|YP_001813400.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15]
 gi|171989461|gb|ACB60383.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15]
          Length = 141

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++   L  +    +S    ++       +          V  +V       
Sbjct: 1   MMKRHMARELAVQSLFQMELSDLSAQEAIEFAVEGKEYDT-------FVTRLVEGVEANK 53

Query: 61  PRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
           P ID  L   ++  S  R     + +LR++V ++L+   +     ++ A+E  K    + 
Sbjct: 54  PEIDQKLRAALVNWSFERIGNIERTILRLAVYELLFEAKIPVRVTINEAIELTKAF-ADE 112

Query: 119 HFAKLVNSILRR 130
              K+VN +L +
Sbjct: 113 EATKIVNGVLGK 124


>gi|331018230|gb|EGH98286.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 165

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L  +      D+ F  +   D    R +++       
Sbjct: 25  AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVAINQT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALTSCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKIYGSTDG- 140

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 141 HKFVNGVLDK 150


>gi|45187658|ref|NP_983881.1| ADL215Wp [Ashbya gossypii ATCC 10895]
 gi|44982419|gb|AAS51705.1| ADL215Wp [Ashbya gossypii ATCC 10895]
          Length = 484

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/488 (14%), Positives = 148/488 (30%), Gaps = 72/488 (14%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF- 69
               +     ++  +   L      S  +   + D   V AIV    ++   +D +++  
Sbjct: 10  VLEYIEQEFARKSKVAGSLHSLVLQSHKKYKLKSDVRHVYAIVASFWKYKAYLDRIIEKS 69

Query: 70  --VLISSLPRKKYSL-QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
             +      + + +  +  L + V  +L        +    ++ A   K           
Sbjct: 70  GLLKDVPRKKGEPAFKRSTLGLVVHDLLLSKKKRIHMGKHPLK-AFVLKHQTRLRGEYAK 128

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
            L ++    + +L +       P  +          +R   + +              D 
Sbjct: 129 QLVKLGVADLSVLVQDEREDATPVRWIRLNPFRIRGQREEVLQELQKKFPR----RVADW 184

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                          G+      + I S   +  G   +QD ++  P Q+     +  ++
Sbjct: 185 RELTPGSIYEDEYVAGLYGVHPADKITSHELYKRGKIIIQDRASCFPAQILAPGRSDVII 244

Query: 247 DLCAAPGGKTAQLIVS--------GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMD 297
           D CAAPG KT  +            A++ A +   +R + LR  +         ++   D
Sbjct: 245 DACAAPGNKTTHVAAHIFPEGGADHAQIHAFERDPQRAKTLRKMIATAGCDNAIEVHVGD 304

Query: 298 AFDYCPKKLFD---AVLVDAPCSSTGTIRRHPDVLWTRDT-------------------- 334
                  ++F      +VD  CS +G   R                              
Sbjct: 305 FTRDAQPEIFKNVTGFIVDPSCSGSGIFGRQLVDATQETQKGTETDPSADVPEEETFEAT 364

Query: 335 -------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
                  + + K + FQ +++   +SF      +++S CS+  +++E VV  +L  S + 
Sbjct: 365 KSAVELKNRLAKLSSFQFQIVKHAMSF-PSAKKLIYSTCSVHAEENERVVIDLLLDSKVQ 423

Query: 388 V---------ELVPLNSAYWKSIDMAMALSPE------GWIRITPDMLEKIDGVSSGMDG 432
                     +++P         +       +      G IR+ P           G  G
Sbjct: 424 KGGWKVASRSKVIPAWPRRGHQAEFEEVFPDQAEELAGGCIRVLP--------KEDGGIG 475

Query: 433 FFAVALRR 440
           FFAV   R
Sbjct: 476 FFAVCFER 483


>gi|126738747|ref|ZP_01754443.1| transcription antitermination factor NusB [Roseobacter sp.
           SK209-2-6]
 gi|126719928|gb|EBA16635.1| transcription antitermination factor NusB [Roseobacter sp.
           SK209-2-6]
          Length = 160

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  + +   +   ++                +++ D  L R +V  
Sbjct: 16  MKS--ASRLYAVQALFQMEQSGQTFDQIIVEFEDHRFGAVYDGDEMAEGDTKLFRKLVED 73

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +   +D + D  L     + R   +L+ L R + A++   +     V++  V+ A+ 
Sbjct: 74  AVNYQAPVDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSETPPKVVINEFVDIARA 133

Query: 114 DKENRHFAKLVNSILRRV 131
                  +K VN +L  +
Sbjct: 134 FFPEGKESKFVNGVLDHM 151


>gi|315453162|ref|YP_004073432.1| N utilization substance protein B-like protein [Helicobacter felis
           ATCC 49179]
 gi|315132214|emb|CBY82842.1| N utilization substance protein B homolog [Helicobacter felis ATCC
           49179]
          Length = 134

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 5/138 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL            +L         + +    Q     ++  TL  L
Sbjct: 1   MATRSQVREAVVSLLYAYESGN---EAMLKSAPDFFTQKKIKNAQQRFALDLLEGTLEHL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           P +D  L  +L    L R     + +LR+   +IL+       V++ A+E +K +    +
Sbjct: 58  PSLDNALTPLLKDWDLARIGSMERAILRLGAYEILHTPTNPVVVINEAIELSK-NYGEDN 116

Query: 120 FAKLVNSILRRVSREKIE 137
             KL+N+IL  + ++K  
Sbjct: 117 APKLINAILDALCKQKSH 134


>gi|326201953|ref|ZP_08191823.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782]
 gi|325987748|gb|EGD48574.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782]
          Length = 145

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              +R  +  LL  +  ++      +++   D     L++ D+  ++ IV+      P +
Sbjct: 3   RRASRESAMKLLYQLEIQKTDRDEQINMALED---ESLTENDREYIKGIVDGVFDKTPVL 59

Query: 64  DAVLDF-VLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D +++       + R       +LR+ + +ILY  D+     V+ AVE AK+   N    
Sbjct: 60  DGIIEKKATGWKINRLSKIDLSILRIGIYEILYRDDIPFSVSVNEAVELAKKY-SNEDAG 118

Query: 122 KLVNSILRR 130
             VN +L +
Sbjct: 119 AFVNGLLAK 127


>gi|302338941|ref|YP_003804147.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293]
 gi|301636126|gb|ADK81553.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293]
          Length = 140

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLD-LEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M S   AR+++   +      +  L  LL      +     L     +  R +V  T+  
Sbjct: 1   MGSRRKARILAFQAIYSWEFHKPLLAELLQFDWLEEERKAKLDTETWLFARLLVQGTIEN 60

Query: 60  LPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ID  + + +      R       +LR+S  ++L+  DV     +D AV+ AK    +
Sbjct: 61  CDTIDHRIQNRLEHWDFSRLSKVDLAILRLSTYELLFQQDVPASVAIDEAVDLAKDFGGD 120

Query: 118 RHF 120
             +
Sbjct: 121 DSY 123


>gi|253999962|ref|YP_003052025.1| NusB antitermination factor [Methylovorus sp. SIP3-4]
 gi|253986641|gb|ACT51498.1| NusB antitermination factor [Methylovorus sp. SIP3-4]
          Length = 158

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   +R ++   +   +  +     +L     +  F    + DQ  +R +++  L    
Sbjct: 18  RNRRKSRELALKGIYRNLMNQADFRAILRELADEPEF---DKADQEYLRKLLDGVLAERE 74

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +   +         +L +S  ++++ L +     ++  VE AK        
Sbjct: 75  ELDRRIAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDG- 133

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 134 HKYVNGVLDK 143


>gi|242240313|ref|YP_002988494.1| transcription antitermination protein NusB [Dickeya dadantii
           Ech703]
 gi|242132370|gb|ACS86672.1| NusB antitermination factor [Dickeya dadantii Ech703]
          Length = 139

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R ++        R+DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKGADITYFRELLTGVATQAERLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR++V ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +    
Sbjct: 127 LDKAGPH 133


>gi|152979151|ref|YP_001344780.1| transcription antitermination protein NusB [Actinobacillus
           succinogenes 130Z]
 gi|171704320|sp|A6VPE8|NUSB_ACTSZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150840874|gb|ABR74845.1| NusB antitermination factor [Actinobacillus succinogenes 130Z]
          Length = 142

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L              ++E      + +   D    R +   T+ +L 
Sbjct: 9   SPRRRARECAVQALYSWAVSN---NDATEIELSFITEQDMKGVDTPYFRKLFRNTVTYLE 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   L  +        + +LR++  ++ Y  DV     ++ A+E AK        
Sbjct: 66  SVDVTIAPFLDRTSEELTPIEKAVLRLATYELKYEPDVPYKVAINEAIELAKTF-GAEDS 124

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 125 HKYINGVLDK 134


>gi|294501203|ref|YP_003564903.1| transcription antitermination factor NusB [Bacillus megaterium QM
           B1551]
 gi|295706550|ref|YP_003599625.1| transcription antitermination factor NusB [Bacillus megaterium DSM
           319]
 gi|294351140|gb|ADE71469.1| transcription antitermination factor NusB [Bacillus megaterium QM
           B1551]
 gi|294804209|gb|ADF41275.1| transcription antitermination factor NusB [Bacillus megaterium DSM
           319]
          Length = 130

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L      +      +     +             + ++V   +   
Sbjct: 1   MK-RHTARQKALQALFQHDLGQTEPMEAIGNVVQNEKSDQ-------FLESLVLGVVEHQ 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID +L   L   +L R     + +LR++V ++ Y  ++     ++ A+E AK    + 
Sbjct: 53  QEIDELLRNHLEKWTLDRVATVDRVILRIAVYEMKYEEEIPTSVTLNEAIELAKTF-GDD 111

Query: 119 HFAKLVNSILRR 130
             +K +N +L +
Sbjct: 112 QSSKFINGVLSK 123


>gi|330877563|gb|EGH11712.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 165

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        +L+ +      D+ F  +   D      +++       
Sbjct: 25  AKRREARQMATQALYQRHMAGHALSEIEAQFRVDNDFSNV---DGTYFHELLHGVATNQT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   L  ++         +LR+S  ++L  +DV    V++  +E AK        
Sbjct: 82  EIDTALTPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 141 HKFVNGVLDK 150


>gi|149202343|ref|ZP_01879316.1| transcription antitermination factor NusB [Roseovarius sp. TM1035]
 gi|149144441|gb|EDM32472.1| transcription antitermination factor NusB [Roseovarius sp. TM1035]
          Length = 160

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVN 54
           MKS   ARL +   L  +     S   + +          + +       D  L R +++
Sbjct: 15  MKS--AARLYAVQALFQMEHSGQSSDTVSEEFLDFRFGAEVDEGVDMAEGDVDLFRKLLD 72

Query: 55  VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             + +  +ID + D  L     + R   +L+ L R + A+++  D     V+   V+ AK
Sbjct: 73  DAVSWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSDTPPKVVIMEYVDVAK 132

Query: 113 RDKENRHFAKLVNSILRRV 131
               +   +K VN++L  +
Sbjct: 133 AFYPDGKESKFVNAVLDHM 151


>gi|329767039|ref|ZP_08258567.1| transcription antitermination factor NusB [Gemella haemolysans
           M341]
 gi|328837764|gb|EGF87389.1| transcription antitermination factor NusB [Gemella haemolysans
           M341]
          Length = 131

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R     +L  V    +    LLDLE  + +  +        V   +   +   
Sbjct: 1   MKSRHELREAVFKILFQVENTELDFIELLDLEQEEISTSI-------YVNKTLTEIIEKK 53

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID V+   L    L R     +Q+LR+S  +ILY D+     ++ AVE +K+  E   
Sbjct: 54  DEIDEVISNNLKDWKLERLSKMDRQILRISAYEILYSDIPYKVSINEAVELSKKYSEKDE 113

Query: 120 FAKLVNSILR 129
             K +N +L+
Sbjct: 114 SYKFINGVLK 123


>gi|224004322|ref|XP_002295812.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585844|gb|ACI64529.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 380

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 16/151 (10%)

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           + FD VLVDA CS+ G +R +       T +  ++ +    Q++LL  G    K GGIVV
Sbjct: 230 QPFDRVLVDAECSTDGAVRHNQKRQQGPTWNATNMNELVDLQKRLLDSGFRLCKSGGIVV 289

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------------E 410
           +S CSL  + +E+VVQ +L        ++P++ +  +++    +                
Sbjct: 290 YSTCSLSAKQNEQVVQWLLEKHKNAF-IIPVSFSKGRNLSSKTSQRATDSLSFIQEGSIA 348

Query: 411 GWIRITPD-MLEKIDGVSSGMDGFFAVALRR 440
           G +R  P   +           GFF   + +
Sbjct: 349 GTVRFNPSFEVASCGECLFSGGGFFLAKIGK 379


>gi|296448765|ref|ZP_06890618.1| NusB antitermination factor [Methylosinus trichosporium OB3b]
 gi|296253723|gb|EFH00897.1| NusB antitermination factor [Methylosinus trichosporium OB3b]
          Length = 152

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 9/145 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLR 58
              +RL     L  +      L  +          R +        +    R IV   L 
Sbjct: 6   RSASRLAIVQALYQMEVAGKGLNEIYAEFEVHWIGREIEGDQYKPAELQFFRDIVKGVLD 65

Query: 59  FLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
               ID  LD  L     L R +  ++ +LR    ++ +  DV    V+   V+ A    
Sbjct: 66  NQTPIDRALDQALQGGWPLQRIESVMRAILRAGAYELGFRRDVPVKVVIKEYVDVAGAFF 125

Query: 116 ENRHFAKLVNSILRRVSREKIELLQ 140
                + ++N++L R++R+      
Sbjct: 126 GPTE-SGMINAVLDRLARQARPEHF 149


>gi|297198328|ref|ZP_06915725.1| transcription antitermination factor NusB [Streptomyces sviceus
           ATCC 29083]
 gi|197714379|gb|EDY58413.1| transcription antitermination factor NusB [Streptomyces sviceus
           ATCC 29083]
          Length = 144

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      S               +V       
Sbjct: 1   MAARNTARKRAFQILFEGDQRDADVLTVLADWIRHSREDTRQPPVSEYTMQLVEGYAEHA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + +LR+   ++++ D   D  V+D  V+ AK    + 
Sbjct: 61  QRIDELIAQYSVGWTLDRMPVVDRNILRLGAYELIWADETPDAVVLDEMVQLAKEFSTDE 120

Query: 119 HFA 121
             +
Sbjct: 121 SPS 123


>gi|296161946|ref|ZP_06844746.1| NusB antitermination factor [Burkholderia sp. Ch1-1]
 gi|295887822|gb|EFG67640.1| NusB antitermination factor [Burkholderia sp. Ch1-1]
          Length = 144

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   F    + D   + A+++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLNALLHGVIRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A +   L   + +     + +L V+  ++  ++D+    V++ AVE AK      
Sbjct: 58  SEALSADIVPCLDRPIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAVELAKTFGGAD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|331001107|ref|ZP_08324738.1| transcription antitermination factor NusB [Parasutterella
           excrementihominis YIT 11859]
 gi|329569412|gb|EGG51190.1| transcription antitermination factor NusB [Parasutterella
           excrementihominis YIT 11859]
          Length = 159

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 4/130 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +   +        +         F    + DQ   R +++      P ++A   
Sbjct: 26  EFALQGVYQWLMSHTDPEAIDAAALEAEDF---DKADQAFYRELLHGVTEEFPSLEASYA 82

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +   +       + +L +   ++         V++ AVE AK    +  F   VN +L
Sbjct: 83  PHIDREVTSLSPIERAILLIGTYELKNTTTPYRVVINEAVELAKSFGGSDGFK-YVNGVL 141

Query: 129 RRVSREKIEL 138
            ++  E    
Sbjct: 142 DKMVPELRPY 151


>gi|289208845|ref|YP_003460911.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
 gi|288944476|gb|ADC72175.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
          Length = 187

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 5/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L            +L     D       + D    R I+    R    +DA 
Sbjct: 53  ARRRAMQALYSWQMTAAEPKDILAEFRDDEEHA---KADAEYFREILIGVTRNREALDAR 109

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           ++  L   L +     + LL +   ++   +DV    V++ AV+ AKR        + +N
Sbjct: 110 MEPYLGRPLDQLDPVERALLWLGQWELAERIDVPYRVVINEAVDLAKRF-GAEQSHRYIN 168

Query: 126 SILRR 130
            +L R
Sbjct: 169 GVLDR 173


>gi|163759209|ref|ZP_02166295.1| transcription antitermination protein NusB [Hoeflea phototrophica
           DFL-43]
 gi|162283613|gb|EDQ33898.1| transcription antitermination protein NusB [Hoeflea phototrophica
           DFL-43]
          Length = 164

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++           +        D    +A+V+  +   
Sbjct: 19  AARLAAVQALYQMDIGGAGVLEVVAEYEAHRLGHEIDGEQYRPADAAWFKAVVSGVVENQ 78

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
             +D V+   L     L R   +L+ +LR    ++    DV    +V   V+ A+     
Sbjct: 79  RALDPVIRSSLTEDWPLSRLDATLRAILRAGAWELSSKKDVPVAVIVTEYVDVARAFF-E 137

Query: 118 RHFAKLVNSILRRVSREK 135
               K+VN++L R++R+ 
Sbjct: 138 EDEPKIVNAVLDRLARKY 155


>gi|167037510|ref|YP_001665088.1| transcription antitermination protein NusB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040172|ref|YP_001663157.1| transcription antitermination protein NusB [Thermoanaerobacter sp.
           X514]
 gi|256752868|ref|ZP_05493706.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914255|ref|ZP_07131571.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
 gi|307724509|ref|YP_003904260.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
 gi|320115924|ref|YP_004186083.1| transcription antitermination factor NusB [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|238687554|sp|B0K0U6|NUSB_THEPX RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687696|sp|B0K9D9|NUSB_THEP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166854412|gb|ABY92821.1| NusB antitermination factor [Thermoanaerobacter sp. X514]
 gi|166856344|gb|ABY94752.1| NusB antitermination factor [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256748245|gb|EEU61311.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889190|gb|EFK84336.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
 gi|307581570|gb|ADN54969.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
 gi|319929015|gb|ADV79700.1| transcription antitermination factor NusB [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 140

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR     +L      R+ ++ +L+  Y +          +  +   V   +  L  
Sbjct: 2   NRTEAREWVVKMLYQYDVSRLPISKILENFYKEKD----PGEQKEYIENTVIGAIEHLEE 57

Query: 63  IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           ID  ++    +  L R       +LR S+ ++ Y ++     ++ AVE AK+       A
Sbjct: 58  IDKEIERYSQNWALNRMPKIDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYSTEDSPA 117


>gi|113868812|ref|YP_727301.1| transcription antitermination protein NusB [Ralstonia eutropha H16]
 gi|122946671|sp|Q0K7T8|NUSB_RALEH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|113527588|emb|CAJ93933.1| transcription termination factor [Ralstonia eutropha H16]
          Length = 172

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R ++   L   +  R     +  ++      +  ++ D+    A++N  +R   
Sbjct: 33  SARRRSRELALQGLYQWLLNR---NDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEA 89

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           R+ A  +  L   +       +  L V   ++++ LD+    V++ AVE  K       +
Sbjct: 90  RLTAAFEPFLDRKVEELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGY 149

Query: 121 A 121
            
Sbjct: 150 K 150


>gi|158296526|ref|XP_554918.3| AGAP008523-PA [Anopheles gambiae str. PEST]
 gi|157014752|gb|EAL39544.3| AGAP008523-PA [Anopheles gambiae str. PEST]
          Length = 511

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 26/233 (11%)

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL----- 279
           D ++ +P           VLD CAAPGGK       +    +   D+ + R  ++     
Sbjct: 284 DGASCLPPLALNVQPGDRVLDACAAPGGKSLLLLQTLHPGTMVMNDLQESRCNRIRQLMR 343

Query: 280 ---RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDT 334
                  ++       I + DA +     ++D VLVD PC++     +    ++      
Sbjct: 344 QYLYDFDEKWKQKRCFITQSDARNLQEHSMYDRVLVDVPCTNDRHSVMENDNNIFKPSRV 403

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RSSPIPVEL 390
            + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L        + V +
Sbjct: 404 KERLRLPELQASILGNCLKLLRPGGTLVYSTCSLSPVQNDGVVHMALSNVFSEIGMTVTI 463

Query: 391 VPLNSAYWKSID---MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             L+       D    A   + +    + P +              +   + R
Sbjct: 464 KDLSLMMQPLTDIFKFANPTTLKYGQLVLPFLPANFGP-------MYICKMVR 509


>gi|328881138|emb|CCA54377.1| Transcription termination protein NusB [Streptomyces venezuelae
           ATCC 10712]
          Length = 145

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  S+  +L  +   +               +V      +
Sbjct: 1   MAARSKARKRAFQILFEADQRGASVQQVLADQVRLARSDDRQPPVSDFTMQLVEGYAAHV 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +   L R   + + ++R+   ++++ D   D   +D AV+ AK    + 
Sbjct: 61  ARIDELIATYAVDWDLDRMPVADRNIVRLGAYEVIWEDGTPDAVAIDEAVQLAKEFSTDE 120

Query: 119 H 119
            
Sbjct: 121 S 121


>gi|237809261|ref|YP_002893701.1| NusB antitermination factor [Tolumonas auensis DSM 9187]
 gi|259514913|sp|C4LAE0|NUSB_TOLAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|237501522|gb|ACQ94115.1| NusB antitermination factor [Tolumonas auensis DSM 9187]
          Length = 138

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 7/138 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR ++   +      + ++  +++    +   + +   D      ++   + 
Sbjct: 1   MKPAERRKARHLALQAIYQWQLAKDNVADIVEQFKLEQPTKGV---DLPYFELLLTGVVN 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            +  +DA     L   L       + +LR++  ++ Y  DV    V++ A+E AK     
Sbjct: 58  NVTNLDATFSPFLSRKLDDLDQIDKGVLRLACYELTYCKDVPYKVVINEAIELAKAF-AT 116

Query: 118 RHFAKLVNSILRRVSREK 135
               K VN +L +V ++ 
Sbjct: 117 DDSHKFVNGVLDKVVKQM 134


>gi|224005519|ref|XP_002291720.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972239|gb|EED90571.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 723

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 48/211 (22%)

Query: 252 PGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-----EDIIEMDAFDYCPKKL 306
              K  ++      V A +++ +R  ++   L + +  +         +   +   PK  
Sbjct: 361 MASKADEVPCKDYTVVANELTHQRATRMHSRLLQSNSKSLSHLIVTSGDGQEYRSMPKNY 420

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP--------- 357
           FD V+ D PCS  GTI+R+                  Q++LL  G+  +KP         
Sbjct: 421 FDFVMCDVPCSGDGTIQRNKP---------------LQKELLRVGLMGLKPSEVDSSGKC 465

Query: 358 -GGIVVFSNCSLDKQDSEEVVQKVLRS------SPIPVELVPLNSAYWKSIDMAMALSPE 410
            GGI V+S CSL+  ++EEVV +VL        +    ELV L  +   + +     S  
Sbjct: 466 IGGIAVYSTCSLNPTENEEVVYEVLDELNSDRGNDYEFELVDLRDSSSNTTESNRNGS-- 523

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            ++R+ P         S G  GFFA ALR++
Sbjct: 524 -FLRVLP-------ASSHG--GFFAAALRKV 544


>gi|77464330|ref|YP_353834.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1]
 gi|77388748|gb|ABA79933.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1]
          Length = 155

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     ++  +                 +++ D    RAIV+ 
Sbjct: 8   MKS--ASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDEMAEGDAKSFRAIVSG 65

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +     ID + D  L     + R    ++ L R + +++L  +     V++  V+ AK 
Sbjct: 66  AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESETPPKVVINEFVDIAKA 125

Query: 114 DKENRHFAKLVNSILRRV 131
                   K VN++L  +
Sbjct: 126 FFPEGREPKFVNAVLDHM 143


>gi|260466838|ref|ZP_05813022.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075]
 gi|259029340|gb|EEW30632.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075]
          Length = 166

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +  +          + +      + D    RAI+   
Sbjct: 16  NKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAILTGV 75

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +     ID ++   L     L R   +L+ +LR  V +++   DV    +V   V+ AK 
Sbjct: 76  VEDQKTIDPIIRQSLTEDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVDIAKA 135

Query: 114 DKENRHFAKLVNSILRR 130
                   KLVN++L R
Sbjct: 136 FY-EEDEPKLVNAVLDR 151


>gi|313201935|ref|YP_004040593.1| nusb antitermination factor [Methylovorus sp. MP688]
 gi|312441251|gb|ADQ85357.1| NusB antitermination factor [Methylovorus sp. MP688]
          Length = 158

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   +R ++   +   +  +     +L     +  F    + DQ  +R +++  L    
Sbjct: 18  RNRRKSRELALKGIYRNLLNQADFRAILRELADEPEF---DKADQEYLRKLLDGVLAERE 74

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +   +         +L +S  ++++ L +     ++  VE AK        
Sbjct: 75  ELDRRIAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDG- 133

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 134 HKYVNGVLDK 143


>gi|90419413|ref|ZP_01227323.1| putative transcription termination protein NusB [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336350|gb|EAS50091.1| putative transcription termination protein NusB [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 177

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +     +L   +           +      + D    R +V+  
Sbjct: 15  NKRGAARLAAVQALYQMEVGGTALLETVAEYENFRLGSEIDGETYREADAGWFRDVVSGV 74

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +R    ID  +   L     L R   +L+ +LR    ++    DV    +V   ++ AK 
Sbjct: 75  VRSQTEIDPKIHASLPTDWPLSRIDTTLRAILRAGTYELSNRKDVPVAVIVSEYIDVAKA 134

Query: 114 DKENRHFAKLVNSILRR 130
                    LVN++L R
Sbjct: 135 FYTGDE-PGLVNAVLDR 150


>gi|170719757|ref|YP_001747445.1| transcription antitermination protein NusB [Pseudomonas putida
           W619]
 gi|229620367|sp|B1J3F6|NUSB_PSEPW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169757760|gb|ACA71076.1| NusB antitermination factor [Pseudomonas putida W619]
          Length = 166

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L      + SL  +      D+ F   +  D    R I++       
Sbjct: 26  AKRREARKLATQALYQWHMAQHSLNEIEAQFRVDNDF---TDVDGAYFREILHGVPAIKS 82

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHF 120
            ID+ L   +  +L         +LR+S  + I  +DV    V++  VE AK        
Sbjct: 83  EIDSALKPCMDIALEELDPVELAVLRLSTWEFIKRVDVPYRVVINEGVELAKVFGATDGH 142

Query: 121 A 121
            
Sbjct: 143 K 143


>gi|329938937|ref|ZP_08288311.1| Transcription termination protein NusB [Streptomyces
           griseoaurantiacus M045]
 gi|329301822|gb|EGG45715.1| Transcription termination protein NusB [Streptomyces
           griseoaurantiacus M045]
          Length = 142

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++   +  +L      S               +V      +
Sbjct: 1   MAARNTARKRAFQILFEGDQRGADVLTVLADWVSLSRSDTRQPPVSEYTMQLVEGYAEHV 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID +L    +  +L R     + +LR+   +++++D   D  V+D  V+ AK    + 
Sbjct: 61  TRIDELLAQYAVGWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAKEFSTDE 120

Query: 119 HFAKLVNSILRR 130
                VN +L R
Sbjct: 121 S-PGFVNGLLGR 131


>gi|222153656|ref|YP_002562833.1| transcription antitermination protein NusB [Streptococcus uberis
           0140J]
 gi|254772659|sp|B9DVJ4|NUSB_STRU0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222114469|emb|CAR43313.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus uberis 0140J]
          Length = 142

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFL 60
            S  + R  +   L  +      L+        D       + D    +  +VN  +   
Sbjct: 7   NSRRDLRERAFQALFNMEHGGDFLSA--SQFAYDYDKVSDQEHDIPAFLLTLVNGVVNHK 64

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
             +DA++   L    S+ R   + + +LR+ + +I  + +  D   ++  +E AK+   +
Sbjct: 65  DELDAIIKEHLKAGWSIERLTLTDRTMLRLGLYEIKFFEETPDRVALNEIIEIAKKY-SD 123

Query: 118 RHFAKLVNSILRRV 131
              AK +N +L + 
Sbjct: 124 ETSAKFINGLLSQF 137


>gi|251792444|ref|YP_003007170.1| transcription antitermination protein NusB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533837|gb|ACS97083.1| transcription antitermination factor NusB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 141

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      + S   +   E      + ++  D+   R +   T+  + 
Sbjct: 9   SPRRRARECAVQALYSWAISQNSPELV---ELNFMTEQDMNGVDKPYFRKLFRQTVENVD 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            ++  +   L  +L       + +LR++V ++ +  DV    V++ A+E AK    +   
Sbjct: 66  AVEHTMQGYLDRTLDELDPIEKAILRLAVYELQFEADVPYKVVINEAIEVAKVFGADES- 124

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 125 HKYINGVLDK 134


>gi|118384082|ref|XP_001025194.1| hypothetical protein TTHERM_00685920 [Tetrahymena thermophila]
 gi|89306961|gb|EAS04949.1| hypothetical protein TTHERM_00685920 [Tetrahymena thermophila
           SB210]
          Length = 479

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 317 SSTGTIRRHPDVLWTR--------DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
           S+  T ++     W+         D   +      Q+KLL  G    K GG +V+S CS 
Sbjct: 349 SNIYTQKKVKKNEWSMEDFQERVLDPIKLQNIVDLQKKLLTNGFKLCKEGGYIVYSTCSF 408

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428
            +  +E+VV+  L      VE +   +    ++        +  +R  P + +       
Sbjct: 409 ARNQNEDVVEWFLNEFKDQVESIHPFNNDVSNMPACKPGFIQNTVRFDPFVSKSG----- 463

Query: 429 GMDGFFAVALRRLIQ 443
              G F     +  +
Sbjct: 464 ---GMFVSKFIKKQK 475



 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 78/205 (38%), Gaps = 8/205 (3%)

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
             + + E+ +  +    + ++P  F + L++           +     + +   +K  IE
Sbjct: 15  NEQKNEEQDKEQKNKNILDLLPSTFTQFLKDNNINLEYFQEIENFPRYIRLKPDIKVSIE 74

Query: 188 TWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243
                L       +              IV+   +++G+ +  D S++  ++        
Sbjct: 75  ELKKDLGTDDVQKIDYLCNFYSIPENVKIVNSKYYSQGLLYGIDLSSAAVIKSLDPQKGE 134

Query: 244 SVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAF 299
            VLDLC  PG K   +        K   +D+++ RL   R  + +  L +   +   D  
Sbjct: 135 KVLDLCCCPGMKLCNIADIIGAEGKAFGVDINETRLNTCRSIVKKYKLDHIIKLELADGT 194

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRR 324
            Y  +  FD VLVDA C+  G+++ 
Sbjct: 195 TYNKESQFDRVLVDAECTHDGSLKH 219


>gi|195032188|ref|XP_001988454.1| GH11175 [Drosophila grimshawi]
 gi|193904454|gb|EDW03321.1| GH11175 [Drosophila grimshawi]
          Length = 510

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 19/266 (7%)

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-LPGFAEG 221
           + V            +D  +  + +        + + T  +      +     L G    
Sbjct: 220 DWVAESEHYKYYQTNVDFPLIIEPDATLQYPEHLAIYTYEMGNCADFKPPRQCLTGVLSH 279

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL 279
             ++ D ++ +P           VLD CAAPGGK       +   ++   DV + RL KL
Sbjct: 280 --FLMDGASVLPPLFLQVQPGERVLDACAAPGGKSLLMLQTLHLDQLVCNDVQESRLNKL 337

Query: 280 RC--------NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVL 329
           R            R           DA +      +D +LVD PC++     + +  ++ 
Sbjct: 338 RHVMQEYLFDYKQRWAGKRLIFSHNDARNLDEYGSYDKILVDVPCTTDRHVLMHQDNNIF 397

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SP 385
                 + ++    Q  +L   +  +KPGG +V+S CSL    ++ VV   L+       
Sbjct: 398 KPTRIKERLRIPELQAGILANCLRLLKPGGSLVYSTCSLSPVQNDGVVHMALQKVFTDHG 457

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEG 411
           I   +  L+       D+     P+G
Sbjct: 458 ITTRIKDLSQHTALLGDIYRFEQPKG 483


>gi|168186196|ref|ZP_02620831.1| transcription antitermination factor NusB [Clostridium botulinum C
           str. Eklund]
 gi|169295703|gb|EDS77836.1| transcription antitermination factor NusB [Clostridium botulinum C
           str. Eklund]
          Length = 133

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   +R V+  LL  +   +   + +L   + ++    +   D + +  IVN   +    
Sbjct: 2   NRRKSREVAMKLLFEMSINKEEFSEILKN-FKENTDTNMENVDFVYINKIVNGIEQNKED 60

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID  ++  L    L R       +LR+S  +I+++ D+ +   V+ A+E AK+   + + 
Sbjct: 61  IDKRIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSAD-NS 119

Query: 121 AKLVNSILRRV 131
              VN +L  +
Sbjct: 120 PAFVNGVLGNM 130


>gi|26987256|ref|NP_742681.1| transcription antitermination protein NusB [Pseudomonas putida
           KT2440]
 gi|148545803|ref|YP_001265905.1| transcription antitermination protein NusB [Pseudomonas putida F1]
 gi|167031580|ref|YP_001666811.1| transcription antitermination protein NusB [Pseudomonas putida
           GB-1]
 gi|32171603|sp|Q88QH5|NUSB_PSEPK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215708|sp|A5VXW1|NUSB_PSEP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035897|sp|B0KL71|NUSB_PSEPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24981898|gb|AAN66145.1|AE016242_13 N utilization substance protein B [Pseudomonas putida KT2440]
 gi|148509861|gb|ABQ76721.1| NusB antitermination factor [Pseudomonas putida F1]
 gi|166858068|gb|ABY96475.1| NusB antitermination factor [Pseudomonas putida GB-1]
 gi|313496885|gb|ADR58251.1| NusB [Pseudomonas putida BIRD-1]
          Length = 166

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L      + SL  +      D+ F   +  D    R I++       
Sbjct: 26  AKRREARKLATQALYQWHMAQHSLNEIEAQFRVDNDF---TDVDGAYFREILHGVPAIKG 82

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ID  L   +  +L         +LR+S  +++  +DV    V++  VE AK        
Sbjct: 83  EIDKALVPCMTIALEELDPVELAVLRLSTWELIKRVDVPYRVVINEGVELAKVFGATDGH 142

Query: 121 A 121
            
Sbjct: 143 K 143


>gi|225708214|gb|ACO09953.1| methyltransferase NCL1 [Osmerus mordax]
          Length = 342

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 100/264 (37%), Gaps = 29/264 (10%)

Query: 200 TGGIRLKELPESIVSLP-----GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                L      I          +    +++ DA++ +P  +       SVLDLCAAPGG
Sbjct: 85  PNIRCLVYPKGDISRFKPARPRAYGLLGYYLLDAASVLPALVLDVQEGHSVLDLCAAPGG 144

Query: 255 KTAQLIVSGAKVTAL--DVSKRRLEKLRCNLDRLHLY--------AEDIIEMDAFDYCPK 304
           K   L+ +G        DVS  R  +LR  L                   +   ++   +
Sbjct: 145 KALALLQTGLLRFLCVNDVSSSRTARLRAVLRSFVHKELLTDDRVRITSFDGRKWEEFER 204

Query: 305 KLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             FD VLVD PC++     I    ++     T +  +    Q +LLL GI   +PGG VV
Sbjct: 205 NFFDRVLVDVPCTTDRHSLIEEENNIFKRARTKERQRLPQVQLELLLSGIQAARPGGEVV 264

Query: 363 FSNCSLDKQDSEEVVQKVL----RSSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITP 417
           +S CSL +  ++ VV++ L        + +E+V L        D    A        + P
Sbjct: 265 YSTCSLSQLQNQYVVEQALQQAREEHGVALEVVDLRPLTHLFRDTFHFAPDTHLGELVLP 324

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
            +      +       +   LRRL
Sbjct: 325 HLSANFGPI-------YLCKLRRL 341


>gi|312385026|gb|EFR29619.1| hypothetical protein AND_01267 [Anopheles darlingi]
          Length = 563

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKL----- 279
           D ++ +P           VLD C+APGGK+  L+ +     +   D+ + R  ++     
Sbjct: 383 DGASCLPPLALDVQPGERVLDACSAPGGKSLLLLQTLLPGTMVMNDLQESRCNRIRRLLR 442

Query: 280 ---RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDT 334
                  D+       I + DA +    +++D VLVD PC++     +    ++      
Sbjct: 443 QYLYDFDDKWKQKRCFITQSDARNLREYRMYDRVLVDVPCTNDRHSVMENDNNIFKPSRV 502

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
            + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L +
Sbjct: 503 KERLRLPELQAAILANCLQLLRPGGTLVYSTCSLSPVQNDGVVHMALSN 551


>gi|116748821|ref|YP_845508.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB]
 gi|166215725|sp|A0LI21|NUSB_SYNFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116697885|gb|ABK17073.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB]
          Length = 151

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M     +R ++  +L  +    +     L      + D     +    +     IV    
Sbjct: 1   MGRRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEEIVRGVS 60

Query: 58  RFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115
               RID ++        L R     + +LR++V ++L+  D+     ++ A++  K   
Sbjct: 61  LHRARIDEMITSASEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLGKTFG 120

Query: 116 ENRHFA 121
                A
Sbjct: 121 SPDSGA 126


>gi|189424280|ref|YP_001951457.1| NusB antitermination factor [Geobacter lovleyi SZ]
 gi|238692133|sp|B3E757|NUSB_GEOLS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189420539|gb|ACD94937.1| NusB antitermination factor [Geobacter lovleyi SZ]
          Length = 142

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 6/137 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  +L      + SL   L             +R +    A+V   +   
Sbjct: 1   MGLRREARELALQMLYAQDTLQGSLRDTLRGFREGVET---GERTREFAEALVQGVMEHR 57

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID  +     +  L R       ++R++  ++++  D+     ++ A+E AK+   ++
Sbjct: 58  EAIDQAIVARSKNWALSRMPRVDLNIMRMAAYELMFKRDIPKKVSINEAIEIAKKY-GDK 116

Query: 119 HFAKLVNSILRRVSREK 135
                VN IL  +    
Sbjct: 117 ESPAFVNGILDELEACP 133


>gi|222148209|ref|YP_002549166.1| transcription antitermination protein NusB [Agrobacterium vitis S4]
 gi|254772608|sp|B9JV80|NUSB_AGRVS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221735197|gb|ACM36160.1| transcription antitermination factor NusB [Agrobacterium vitis S4]
          Length = 160

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60
            ARL +   L  +      +  ++         + +      + D    R+IV   +R  
Sbjct: 18  AARLAAVQALYQMDIGGTGVLEVVAEYETHRLGQEIDGETYLKADASWFRSIVAGVVRDQ 77

Query: 61  PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
            +ID ++   L    SL R   +++ +LR    ++L   DV    +V   VE A    + 
Sbjct: 78  TKIDPLIRQALQDDWSLARVDSTVRAILRAGTFELLERKDVPIAVIVTEYVEIAHAFFQE 137

Query: 118 RHFAKLVNSILRR 130
               KLVN++L R
Sbjct: 138 DE-PKLVNAVLDR 149


>gi|195118050|ref|XP_002003553.1| GI17979 [Drosophila mojavensis]
 gi|193914128|gb|EDW12995.1| GI17979 [Drosophila mojavensis]
          Length = 512

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 86/236 (36%), Gaps = 26/236 (11%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279
           ++ D ++ +P           VLD CAAPGGK       +   ++   DV + RL KL  
Sbjct: 282 FLMDGASVLPPLFLQVQPGERVLDACAAPGGKSLLMLQTLHLDQLVCNDVQESRLNKLRR 341

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
                      R         + DA +      +D +LVD PC++     + +  ++   
Sbjct: 342 VMQEYLFDYKQRWAGKRLIFSQSDARNLDEYGSYDKILVDVPCTTDRHVLMHQDNNIFKP 401

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387
               + ++    Q  +L   +  +KPGG +V+S CSL    ++ VV   L+       I 
Sbjct: 402 TRIKERLRIPELQAGILANCLRLLKPGGSLVYSTCSLSPVQNDGVVHMALQKVFTEHGIT 461

Query: 388 VELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +  L+       D+     P+G      + P +              +   + R
Sbjct: 462 ARIKDLSQHTALFSDIYRFEQPKGLKYGQMVLPYLPANFGP-------MYFSKITR 510


>gi|332373062|gb|AEE61672.1| unknown [Dendroctonus ponderosae]
          Length = 483

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 28/239 (11%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLR 280
           +++ D  + +PV         S+LD+CAAPGGKT      +    + A DV+  RL ++ 
Sbjct: 252 YYLMDGGSILPVLALDLKPGCSMLDMCAAPGGKTYLAIQTLYPNCIVANDVTNSRLNRIE 311

Query: 281 CNLD--------RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLW 330
             L         R        +  +         FD VLVD PC++          ++  
Sbjct: 312 SVLHQFLYDVEERWLKPGRIKLCNNDGRCISVDNFDRVLVDVPCTTDRHSLKENSNNIFT 371

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPI 386
           +    + ++    Q +LL   ++ VK GGIVV+S CSL    ++ VV   L+     S I
Sbjct: 372 SSRVKERLQLPELQSELLYSALTLVKKGGIVVYSTCSLSPIQNDGVVGMALKKIWENSKI 431

Query: 387 PVELVPLNSAYWKSID----MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            + +  L+ A  ++          L   G + + P   +            +   L+R+
Sbjct: 432 EIIVKDLSPALLQTRSVFYLADQRLLKYGHL-VLPQKGQNYGPT-------YFCKLQRI 482


>gi|99081967|ref|YP_614121.1| NusB antitermination factor [Ruegeria sp. TM1040]
 gi|99038247|gb|ABF64859.1| NusB antitermination factor [Ruegeria sp. TM1040]
          Length = 160

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVT 56
           ++   ARL +   L  + +   S   ++                 ++ D  L R +VN  
Sbjct: 15  QARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYAEGDTKLFRQLVNDA 74

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
           +    +ID + D  L     + R   +L+ L R + A+ +  D     V++  V+ A+  
Sbjct: 75  VNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPVKVVINEYVDIARAF 134

Query: 115 KENRHFAKLVNSILRRV 131
                 A  VN++L  +
Sbjct: 135 FPEGREASFVNAVLDHM 151


>gi|118587988|ref|ZP_01545398.1| transcription antitermination protein NusB [Stappia aggregata IAM
           12614]
 gi|118439610|gb|EAV46241.1| transcription antitermination protein NusB [Stappia aggregata IAM
           12614]
          Length = 173

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 9/135 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      LT ++         + +      + D+   + I+   +    
Sbjct: 24  ARLAAVQALYQMDVGGAPLTSVVSEFTAFRLGKEIDGEQYREADEQWFKQILAGVVEDQK 83

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            +D  +   L     L R    L+ +LR    ++L   DV    ++   ++ AK   E+ 
Sbjct: 84  FLDPYIHTALAEDWPLKRIDSLLRAILRSGSYELLRRKDVPAKVIISEYIDVAKAFFEDD 143

Query: 119 HFAKLVNSILRRVSR 133
               LVN +L R++ 
Sbjct: 144 E-PGLVNGVLDRLAH 157


>gi|195388533|ref|XP_002052934.1| GJ19531 [Drosophila virilis]
 gi|194149391|gb|EDW65089.1| GJ19531 [Drosophila virilis]
          Length = 510

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 86/236 (36%), Gaps = 26/236 (11%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279
           ++ D ++ +P           VLD CAAPGGK       +   ++   DV + RL KL  
Sbjct: 280 FLMDGASVLPPLFLQVQPGERVLDACAAPGGKSLLMLQTLHLDQLVCNDVQESRLNKLRR 339

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
                      R         + DA +      +D +LVD PC++     + +  ++   
Sbjct: 340 VMQEYLFDYKQRWAGKRLIFSQSDARNLDEYGSYDKILVDVPCTTDRHVLMHQDNNIFKP 399

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387
               + ++    Q  +L   +  +KPGG +V+S CSL    ++ VV   L+       I 
Sbjct: 400 TRIKERLRIPELQAGILANCLRLLKPGGSLVYSTCSLSPVQNDGVVHMALQKVFTEHGIT 459

Query: 388 VELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +  L+       D+     P+G      + P +              +   + R
Sbjct: 460 ARIRDLSQHTALFSDIYRFEQPKGLKYGQMVLPYLPANFGP-------MYFSKITR 508


>gi|32473208|ref|NP_866202.1| transcription antitermination protein NusB [Rhodopirellula baltica
           SH 1]
 gi|39931772|sp|Q7USA9|NUSB_RHOBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|32397887|emb|CAD73888.1| probable N utilization substance protein B homolog [Rhodopirellula
           baltica SH 1]
 gi|327540459|gb|EGF27044.1| transcription antitermination protein NusB [Rhodopirellula baltica
           WH47]
          Length = 145

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL---LSQRDQILVRAIVNVTL 57
           M +   AR +   LL                ++  S  +    L+         +++ T+
Sbjct: 5   MSTRRRAREIVLQLLYEADLNDWR-DAATSRKFIRSRLQGRKVLTD----FAAELLDGTM 59

Query: 58  RFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                IDA L  +  +  L R   + + +LR+   +ILY        +  A+  AKR   
Sbjct: 60  ARRDDIDAKLTKLSTNWALHRMPVTDRNVLRLGAYEILYSGTPGQVAISEALTLAKRY-G 118

Query: 117 NRHFAKLVNSILRRVSREK 135
             +  + +N +L R+ +  
Sbjct: 119 GENSPRFINGVLDRLFKYH 137


>gi|126735762|ref|ZP_01751507.1| NOL1/NOP2/sun family protein, putative [Roseobacter sp. CCS2]
 gi|126714949|gb|EBA11815.1| NOL1/NOP2/sun family protein, putative [Roseobacter sp. CCS2]
          Length = 117

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 29/138 (21%)

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            +  FDAV  DAPCS +GT RR PD  W    D + +    Q  +L      V  GG+++
Sbjct: 8   QQPKFDAVFCDAPCSGSGTWRRTPDAKWRLTEDRLDQLIRSQATVLDAAAPLVAAGGVLI 67

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
           ++ CS+   ++++ V +    SP                           IR       +
Sbjct: 68  YATCSVLTHENQDAVDRFCTRSPEW------------------------GIR----RNTQ 99

Query: 423 IDGVSSGMDGFFAVALRR 440
               + G DGFF   L +
Sbjct: 100 RLPDADG-DGFFTCVLLK 116


>gi|116327424|ref|YP_797144.1| transcription antitermination protein NusB [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331982|ref|YP_801700.1| transcription antitermination protein NusB [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122280285|sp|Q04Q78|NUSB_LEPBJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122284775|sp|Q054N4|NUSB_LEPBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116120168|gb|ABJ78211.1| Transcription antitermination protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125671|gb|ABJ76942.1| Transcription antitermination protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 138

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   +R ++   L  +      L  +L  ++ D         ++    +IVN  ++  
Sbjct: 1   MSARRTSREIAVMALYQLELTGPPLKEVLKFKWYDKKT---EPEERDFAVSIVNGVVKNQ 57

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +ID ++     +    R     + +LR+SV  +LY  +V     +D AVE  K  +   
Sbjct: 58  EQIDTLIKKYSKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAVELTKEFESEE 117

Query: 119 HF 120
             
Sbjct: 118 SA 119


>gi|118443864|ref|YP_878051.1| transcription antitermination protein NusB [Clostridium novyi NT]
 gi|166215685|sp|A0Q099|NUSB_CLONN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118134320|gb|ABK61364.1| transcription antitermination factor NusB [Clostridium novyi NT]
          Length = 133

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   +R V+  LL  +   +   + +L   + ++    +   D I +  IVN   +    
Sbjct: 2   NRRKSREVAMKLLFEMSINKEEFSEILKN-FKENTDTNMENVDFIYINKIVNGIEQNKED 60

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID  ++  L    L R       +LR+S  +I+++ D+ +   V+ A+E AK+   + + 
Sbjct: 61  IDKKIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSAD-NS 119

Query: 121 AKLVNSILRRV 131
              VN +L  +
Sbjct: 120 PAFVNGVLGNM 130


>gi|315637897|ref|ZP_07893084.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis JV21]
 gi|315482009|gb|EFU72626.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis JV21]
          Length = 132

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   AR     LL  +     +    +     +   R  +   +    ++ N  L  L
Sbjct: 1   MASRHQARQSVISLLYALELNGKN-DNFITEFLQEKKIRNEA---KNFTLSLYNGVLEHL 56

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D  +D  L  + + +  +  + +LR+   ++L+ D     V++ AVE AK    N +
Sbjct: 57  QSLDERIDVFLNENKIHQIGHIERAILRLGAFELLHTDTLAAIVINEAVELAKEM-ANEN 115

Query: 120 FAKLVNSILR 129
             KL+N +L 
Sbjct: 116 APKLINGVLD 125


>gi|229493670|ref|ZP_04387455.1| transcription antitermination factor NusB [Rhodococcus erythropolis
           SK121]
 gi|229319631|gb|EEN85467.1| transcription antitermination factor NusB [Rhodococcus erythropolis
           SK121]
          Length = 165

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD------QILVRAIVNVT 56
           +   AR  +   L     +       LD     S    LS +D            +V+  
Sbjct: 10  ARHKARKRAVDFLFEAEARD------LDPVALASERSDLSVKDDAVAPVAAYTVTLVSGV 63

Query: 57  LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
              L RID V+   L   +L R     + +LR++V ++ +  DV     VD AVE AK+ 
Sbjct: 64  AENLDRIDQVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQ- 122

Query: 115 KENRHFAKLVNSILRR 130
                    VN IL +
Sbjct: 123 LSTDDSPGFVNGILGQ 138


>gi|226306485|ref|YP_002766445.1| transcription antitermination protein NusB [Rhodococcus
           erythropolis PR4]
 gi|259514883|sp|C0ZZC1|NUSB_RHOE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226185602|dbj|BAH33706.1| transcription antitermination protein NusB [Rhodococcus
           erythropolis PR4]
          Length = 165

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD------QILVRAIVNVT 56
           +   AR  +   L     +       LD     S    LS +D            +V+  
Sbjct: 10  ARHKARKRAVDFLFEAEARD------LDPVALASERSDLSVKDDAVAPVAAYTVTLVSGV 63

Query: 57  LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
              L RID V+   L   +L R     + +LR++V ++ +  DV     VD AVE AK+ 
Sbjct: 64  AENLDRIDQVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQ- 122

Query: 115 KENRHFAKLVNSILRR 130
                    VN IL +
Sbjct: 123 LSTDDSPGFVNGILGQ 138


>gi|153878112|ref|ZP_02004488.1| transcription antitermination protein NusB [Beggiatoa sp. PS]
 gi|152065424|gb|EDN65512.1| transcription antitermination protein NusB [Beggiatoa sp. PS]
          Length = 164

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCL---------LDLEYGDSAFRLLSQRDQILVRAI 52
           K+   AR      L        +   +         L  E  +S    + + D    + +
Sbjct: 11  KARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQL 70

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
           ++        +D +    L   + +       +LR+   ++ +  D+    V++ AVE A
Sbjct: 71  LHSIPEKTSDLDKLFAPFLDRKITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVELA 130

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGI 145
           K+        K +N +L +++  + +  +     
Sbjct: 131 KQF-GAEQSHKYINGVLDKLAHSQQKSTKFTKHK 163


>gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
 gi|291003667|ref|ZP_06561640.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
 gi|166918811|sp|A4FBF8|NUSB_SACEN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|133911270|emb|CAM01383.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
          Length = 148

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      LL    G      +++        +V       
Sbjct: 1   MGARNKARKRAVDVLYEADLRGEDAVTLLSGRVGSPDLPPVNE----YTVTLVEGVTANR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117
            RID +L       +L R     + +LR+ + ++L+   DV     +D AVE  K     
Sbjct: 57  QRIDELLVEHAEGWTLARMPAVDRAVLRLGLYELLWRSDDVPPAVAIDEAVELVKA-LST 115

Query: 118 RHFAKLVNSILRR 130
               + VN +L R
Sbjct: 116 DDSPRFVNGVLGR 128


>gi|57168521|ref|ZP_00367654.1| transcription antitermination factor NusB [Campylobacter coli
           RM2228]
 gi|305432938|ref|ZP_07402096.1| transcription antitermination factor NusB [Campylobacter coli JV20]
 gi|57020026|gb|EAL56703.1| transcription antitermination factor NusB [Campylobacter coli
           RM2228]
 gi|304444092|gb|EFM36747.1| transcription antitermination factor NusB [Campylobacter coli JV20]
          Length = 132

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL  +     +    +D    +   R      +    ++    ++ L
Sbjct: 1   MATRHQVRQSVISLLYALEMNEKN-ENFIDEFLNEKKIRN---EQKNFTLSLYEGIIKNL 56

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID  L+  L  + + +  +  + +LR+   ++L+ D  +  V++ A+E AK    N +
Sbjct: 57  DDIDKNLNPYLNENEIEKLGHIERAILRLGAYELLFTDTPNAIVINEAIELAKE-LANDN 115

Query: 120 FAKLVNSILRR 130
             K +N +L  
Sbjct: 116 SPKFINGVLDT 126


>gi|94676751|ref|YP_589030.1| transcription antitermination protein NusB [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|119372277|sp|Q1LSN4|NUSB_BAUCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94219901|gb|ABF14060.1| transcription antitermination factor NusB [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 139

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 7/141 (4%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  +   AR  +   L        ++  +      +   + +   D    R + + T  
Sbjct: 1   MKITARRRARECAVQALYSWQLSNNNIADIEAQFLAEQDIKGI---DVAYFRELYSGTAI 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               +D ++   L   L +  +  + +LR+++ ++    D+     ++ A+E AK     
Sbjct: 58  AADMLDQLMVPYLSRPLDKLGHVERAVLRLALYELSKRQDIPYRVAINEAIELAKTF-GA 116

Query: 118 RHFAKLVNSILRRVSREKIEL 138
               K +N +L + + +    
Sbjct: 117 EDSYKFINGVLEKTASQIRPH 137


>gi|257055582|ref|YP_003133414.1| transcription antitermination factor NusB [Saccharomonospora
           viridis DSM 43017]
 gi|256585454|gb|ACU96587.1| transcription antitermination factor NusB [Saccharomonospora
           viridis DSM 43017]
          Length = 153

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R  +  LL     ++     L+    G      +S         +V        R
Sbjct: 17  SRRASRQRAVELLYEAALRKTDPATLMSERLGSPDVDPISD----YTITLVEGVSENRER 72

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID +L       SL R       +LRV + ++L+L DV D   +D AV  AK+       
Sbjct: 73  IDELLAEYAQGWSLERMPPVDLAVLRVGLYELLWLDDVPDPVAIDEAVGIAKQ-LSTDDS 131

Query: 121 AKLVNSILRR 130
            + VN +L R
Sbjct: 132 PRFVNGVLGR 141


>gi|119472104|ref|ZP_01614335.1| transcription termination factor [Alteromonadales bacterium TW-7]
 gi|119445124|gb|EAW26417.1| transcription termination factor [Alteromonadales bacterium TW-7]
          Length = 136

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 7/137 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR+++   +            + D+E        +++ D    + + +    
Sbjct: 1   MKPAARRKARILALQAVYSWQLSG---NAIADIEQQMLIENDVTKIDVEYFKDLASGVAV 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
               +D  +   L           + +LR+S  ++ +  DV     ++  +E AK     
Sbjct: 58  NYKLLDESVSPHLTRPFDDLDMVERAILRLSSYELKFREDVPYKVAINEGIELAK-IFGA 116

Query: 118 RHFAKLVNSILRRVSRE 134
               K VN +L +  + 
Sbjct: 117 EDSHKFVNGVLDKAVKH 133


>gi|258515792|ref|YP_003192014.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
 gi|257779497|gb|ACV63391.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
          Length = 156

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R ++  +L  +    I           DS   +         R +V  TL  L  ID V+
Sbjct: 7   RQIAMQILFQIEVGGIDPEEAFKNTVADSTCPVPIME---FARQLVFGTLGHLKEIDRVI 63

Query: 68  DFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
             +     L R     + L+R+++ +I Y D +      + A+E AK         K VN
Sbjct: 64  SEISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAKIFGGEES-GKFVN 122

Query: 126 SILRRVSREKIEL 138
            I+ +V ++  E 
Sbjct: 123 GIIGKVVQKPDEY 135


>gi|224437825|ref|ZP_03658772.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
 gi|313144273|ref|ZP_07806466.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
 gi|313129304|gb|EFR46921.1| transcription antitermination protein NusB [Helicobacter cinaedi
           CCUG 18818]
          Length = 165

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 4/139 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     +L            +LD+       + +  + Q     ++   +  L
Sbjct: 1   MATRTQAREAVIGMLYAYDLGNK---DILDIARSMFEEKKIKNKQQDFAFLLLQGAITNL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID  +   L      R     + +LR+   +ILY D     V++ A+E  K      +
Sbjct: 58  QSIDEAIIPYLKEWDFSRLGGMEKAVLRLGAYEILYTDTDSPVVINEAIELGKMYGGEDN 117

Query: 120 FAKLVNSILRRVSREKIEL 138
             + +N +L  +S+   ++
Sbjct: 118 TPRFLNGVLDALSKAHRQM 136


>gi|124268133|ref|YP_001022137.1| putative N utilization substance B [Methylibium petroleiphilum PM1]
 gi|124260908|gb|ABM95902.1| putative N utilization substance B (transcriptional
           antiterminator)(l factor) transcription regulator
           protein [Methylibium petroleiphilum PM1]
          Length = 176

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            S   +R  +   L   +        +++    +       Q D     A+++  +    
Sbjct: 31  SSRRRSREFALQGLYQWLVSGSEA-VVIEAHMRE--LDGFKQADAAHFDALLHGCVAEAA 87

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DAVL   +             +L +   ++ +  D+     ++ AVE AK        
Sbjct: 88  ALDAVLARHVDRKTTELSPIEHGVLMIGAYELKHCIDIPYRVAINEAVELAKSFGGTDG- 146

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 147 HKYVNGVLDK 156


>gi|145634912|ref|ZP_01790619.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittAA]
 gi|229845118|ref|ZP_04465253.1| transcription antitermination protein NusB [Haemophilus influenzae
           6P18H1]
 gi|145267778|gb|EDK07775.1| transcription antitermination protein NusB [Haemophilus influenzae
           PittAA]
 gi|229811954|gb|EEP47648.1| transcription antitermination protein NusB [Haemophilus influenzae
           6P18H1]
          Length = 144

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L        ++  +   E      + +   D+   R +   T+  + 
Sbjct: 11  SARRRARECTVQALYSWAVSGNTVEQV---ELAFVLDQDMDGVDKPYFRKLFRQTVENIE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +      +          +LR++V ++ + LDV    V++ A+E AK    +   
Sbjct: 68  TVDFSISPYTDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|288941488|ref|YP_003443728.1| NusB antitermination factor [Allochromatium vinosum DSM 180]
 gi|288896860|gb|ADC62696.1| NusB antitermination factor [Allochromatium vinosum DSM 180]
          Length = 171

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 2   KSGMNARLVSSHLLSCVMRKRIS--------------LTCLLDLEYGDSAFRLLSQRDQ- 46
                +R  ++  L                       L  +     G S    L+  D+ 
Sbjct: 11  SPRSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNGVSDEDELAAEDRF 70

Query: 47  ----ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADY 101
                L+  ++N     +  IDA LD  L   + +       +LR+   +IL+ D + D 
Sbjct: 71  NFNVELLDELLNGVPTHIDAIDAQLDRFLDRPISQVDPVELAILRLGAYEILFSDNIPDR 130

Query: 102 AVVDLAVEQAK---RDKENRHFAKLVNSILRRVSREK 135
             ++ AVE  K     + +++   +++ I RR + + 
Sbjct: 131 VAINEAVELTKLLGAHEGHKYVNGVLDKIARRKAGDM 167


>gi|224283414|ref|ZP_03646736.1| NusB antitermination factor [Bifidobacterium bifidum NCIMB 41171]
 gi|313140569|ref|ZP_07802762.1| transcription termination factor [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133079|gb|EFR50696.1| transcription termination factor [Bifidobacterium bifidum NCIMB
           41171]
          Length = 223

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR  + + L     K    L+ L +      A   L          IV      
Sbjct: 1   MA-RSTARKRALNTLYEADEKGQDFLSLLAERIEEPGAQTPLPD----YAIEIVRGVADH 55

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ID +L+       + R     + +LR++  +I++  DV D   +D A+  AK   + 
Sbjct: 56  RREIDYMLNEHSTGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAKTLSDG 115

Query: 118 RHFA 121
              A
Sbjct: 116 DSPA 119


>gi|171059618|ref|YP_001791967.1| NusB antitermination factor [Leptothrix cholodnii SP-6]
 gi|170777063|gb|ACB35202.1| NusB antitermination factor [Leptothrix cholodnii SP-6]
          Length = 171

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R ++   L      +     +                D     A+++  +  + 
Sbjct: 28  SARRRSRELALQGLYEWQVGQADSHVVEAHMREQEDHAKC---DTAHFSALLHGCIAQVA 84

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +DAVL   L   +         +L +   ++ + LDV     ++ AVE AK        
Sbjct: 85  ALDAVLTPHLDRRVQELSPVEHGVLLIGAYELQHCLDVPYKVAINEAVELAKSFGGTDG- 143

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 144 HKYVNGVLDK 153


>gi|170693624|ref|ZP_02884782.1| NusB antitermination factor [Burkholderia graminis C4D1M]
 gi|170141406|gb|EDT09576.1| NusB antitermination factor [Burkholderia graminis C4D1M]
          Length = 144

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MKS    +R +++  L   +        +     G   F    + D   + AI++  +R 
Sbjct: 1   MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAILHGVIRD 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + A +   L   + +     + +L V+  ++  ++D+    V++ AVE AK      
Sbjct: 58  SEALSADIAPCLDRPIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAVELAKTFGGVD 117

Query: 119 HFA 121
            + 
Sbjct: 118 GYK 120


>gi|294656172|ref|XP_458422.2| DEHA2C16874p [Debaryomyces hansenii CBS767]
 gi|199430915|emb|CAG86504.2| DEHA2C16874p [Debaryomyces hansenii]
          Length = 493

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 134/436 (30%), Gaps = 59/436 (13%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + A+V  TL++   I A++         + K +L         Q   L ++D  ++ +  
Sbjct: 40  IYALVYSTLKYKEHIQAIIRK------SKIKQTL---------QTKKLKISDNLLLLVVH 84

Query: 109 EQAKRDKENRHFAKLV------------NSILRRVSREKIELLQRIAGISIIPEWFKERL 156
           +     K      K               +   ++  +           S+  +      
Sbjct: 85  DLLFNSKGRIQSGKHPIKDAILQHKTRLQAEFTKLKLKYKAKSAEDLPTSVSSDDETPIR 144

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
                  +          P +  L     IE               +      E + S  
Sbjct: 145 WFRVNTIKTTPEKFFQDHPFFAKLEPISSIEIKETGFIYTDDYIPNLYGIHPKEKLTSTA 204

Query: 217 GFAEGVWWVQDASASIPVQLFGTL---NNLSVLDLCAAPGGKTAQLIVS-----GAKVTA 268
            + +G   +QD ++  P  +       N++ ++D CAAPG KT            + V A
Sbjct: 205 AYLKGEVIIQDRASCFPAHILNDDPSDNHIEIIDSCAAPGNKTTHCASYLPRSEDSVVYA 264

Query: 269 LDVSK---RRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTI 322
            +      + L+ +      +       I   D     P+       ++VD  CS +G  
Sbjct: 265 FERDSNRVKVLKTMCEKATGIKYKNLIQITHADFTSTKPQDFPCVTGLVVDPSCSGSGIF 324

Query: 323 RR-------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
            R               DT+ + + A FQ K++   +SF K    VV+S CS+   ++E 
Sbjct: 325 GRAIEDAQSQEQEKEEIDTERLNRLAGFQFKIMKHALSFPKAR-KVVYSTCSIHPHENER 383

Query: 376 VVQKVL-----RSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDG 425
           VV  +L     ++S   +    +  + W         +      E           +   
Sbjct: 384 VVVDLLMDKEIKASGWQLASRDIVISEWPKRGWKEEFTAVCGGNEEECEALAGGCVRATP 443

Query: 426 VSSGMDGFFAVALRRL 441
              G  GFFA    + 
Sbjct: 444 KEDGGIGFFAACFIKK 459


>gi|148379847|ref|YP_001254388.1| N utilization substance protein B [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933180|ref|YP_001384144.1| transcription antitermination protein NusB [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934479|ref|YP_001387685.1| transcription antitermination protein NusB [Clostridium botulinum A
           str. Hall]
 gi|153938662|ref|YP_001391208.1| transcription antitermination protein NusB [Clostridium botulinum F
           str. Langeland]
 gi|168180474|ref|ZP_02615138.1| N utilization substance protein B [Clostridium botulinum NCTC 2916]
 gi|168184572|ref|ZP_02619236.1| N utilization substance protein B [Clostridium botulinum Bf]
 gi|170757090|ref|YP_001781437.1| transcription antitermination protein NusB [Clostridium botulinum
           B1 str. Okra]
 gi|237795301|ref|YP_002862853.1| N utilization substance protein B [Clostridium botulinum Ba4 str.
           657]
 gi|166215682|sp|A7FUU1|NUSB_CLOB1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215683|sp|A5I310|NUSB_CLOBH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215684|sp|A7GEJ8|NUSB_CLOBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620057|sp|B1IMN9|NUSB_CLOBK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514805|sp|C3KXC7|NUSB_CLOB6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148289331|emb|CAL83427.1| N utilization substance protein b [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929224|gb|ABS34724.1| N utilization substance protein B [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930393|gb|ABS35892.1| N utilization substance protein B [Clostridium botulinum A str.
           Hall]
 gi|152934558|gb|ABS40056.1| N utilization substance protein B [Clostridium botulinum F str.
           Langeland]
 gi|169122302|gb|ACA46138.1| N utilization substance protein B [Clostridium botulinum B1 str.
           Okra]
 gi|182668651|gb|EDT80629.1| N utilization substance protein B [Clostridium botulinum NCTC 2916]
 gi|182672364|gb|EDT84325.1| N utilization substance protein B [Clostridium botulinum Bf]
 gi|229261715|gb|ACQ52748.1| N utilization substance protein B [Clostridium botulinum Ba4 str.
           657]
 gi|295319244|gb|ADF99621.1| N utilization substance protein B [Clostridium botulinum F str.
           230613]
 gi|322806136|emb|CBZ03704.1| transcription termination protein NusB [Clostridium botulinum
           H04402 065]
          Length = 143

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLE-----------YGDSAFRLLSQRDQILVRA 51
           +   +R V+  LL        +L   L+               D     L   D   V+ 
Sbjct: 2   NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61

Query: 52  IVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109
           I+         ID  +   L +  + R       +LR+   ++ +  D+ +   V+ A+E
Sbjct: 62  IIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAIE 121

Query: 110 QAKRDKENRHFAKLVNSILRRV 131
            AK+    +  A  +N +L ++
Sbjct: 122 LAKKYSGEKS-ATFINGVLGKM 142


>gi|121605810|ref|YP_983139.1| transcription antitermination protein NusB [Polaromonas
           naphthalenivorans CJ2]
 gi|120594779|gb|ABM38218.1| NusB antitermination factor [Polaromonas naphthalenivorans CJ2]
          Length = 173

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +  +     +         F    + D     A+++  +    
Sbjct: 30  SARTRAREFALQALYQHLVGQNGADSIDAFTRDLVGFH---KADSAHYDALLHGCIESEK 86

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +  +L   +         +L +   +    LDV    V++  +E AK        
Sbjct: 87  ALDENITPLLDRKMAEISPVEHAILWIGAYEFTNCLDVPYRVVINECIELAKAFGGTDG- 145

Query: 121 AKLVNSILRRVSR 133
            K VN +L +++ 
Sbjct: 146 HKYVNGVLHKMAP 158


>gi|309789561|ref|ZP_07684142.1| NusB antitermination factor [Oscillochloris trichoides DG6]
 gi|308228297|gb|EFO81944.1| NusB antitermination factor [Oscillochloris trichoides DG6]
          Length = 150

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M S     R+ +  +L  V      +  + +    D       +R    +  IV  +   
Sbjct: 1   MASLRHRVRIAALQVLFEVDATDHPIDVVYERRLVDEELPAEGER---FLNQIVFGSWEH 57

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDV---ADYAVVDLAVEQAKRDK 115
              +D V++       + +     + +LR+++ ++L  +V      AV++ AVE AK   
Sbjct: 58  RSYLDGVIEEAAPNWPVTQMPGVDKAILRIAIFELLIDEVEQTPVKAVINEAVELAK-HF 116

Query: 116 ENRHFAKLVNSILRRVSREKIELL 139
            + + ++ +N +L  V        
Sbjct: 117 GSDNSSRFINGVLGTVVNRYRPGH 140


>gi|110633492|ref|YP_673700.1| transcription antitermination protein NusB [Mesorhizobium sp. BNC1]
 gi|119390783|sp|Q11J90|NUSB_MESSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110284476|gb|ABG62535.1| NusB antitermination factor [Chelativorans sp. BNC1]
          Length = 167

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 8/142 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      L             + +      + D    RAI++  
Sbjct: 16  NKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDLYREADAQWFRAILSGV 75

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKR 113
           +     ID V+   L     L R   +L+ +LR  V ++    DV    VV   ++ AK 
Sbjct: 76  IENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDVPVPVVVSEYIDIAKA 135

Query: 114 DKENRHFAKLVNSILRRVSREK 135
                   KLVN++L RV+R  
Sbjct: 136 FYGEEEEPKLVNAVLDRVARRM 157


>gi|163785218|ref|ZP_02179895.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879514|gb|EDP73341.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 146

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 4/137 (2%)

Query: 2   KSGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           K    AR ++  +L      K   +   L+    D   + LS++       I+N    ++
Sbjct: 4   KFRKKAREIALKVLYAYDIDKEKDINETLEETISDIR-QNLSEKTLKYAYQIINGVYEYI 62

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKRDKENR 118
             ID ++   L    L R  Y  + LLR+   ++++ D+ D   V    ++ AK    + 
Sbjct: 63  DEIDNIIQSHLKDWRLDRLGYIERALLRIGTYELVFSDIPDKKRVFMDILDIAKCYNLDE 122

Query: 119 HFAKLVNSILRRVSREK 135
              K +N +L ++ ++ 
Sbjct: 123 KALKFINGVLSKIYKDF 139


>gi|291613126|ref|YP_003523283.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1]
 gi|291583238|gb|ADE10896.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1]
          Length = 150

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 4/119 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR ++   +        +   L++    D     L + D      ++N  +     +
Sbjct: 14  RHRARELAMQGVYEWRLSGKNA-KLIENGTRDEK--SLGRYDTEFFGQLLNGAIAHHEAL 70

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
            A +   L   L         +L +   ++++  +V    V++ AVE AK    +    
Sbjct: 71  SAQIAPHLDRKLDELSPVEYSVLLLGAYELIHHPEVPYRVVINEAVELAKTFGGSDGHK 129


>gi|150866641|ref|XP_001386307.2| hypothetical protein PICST_73698 [Scheffersomyces stipitis CBS
           6054]
 gi|149387897|gb|ABN68278.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 511

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 63/440 (14%), Positives = 132/440 (30%), Gaps = 67/440 (15%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + A+V+ TL++   I+ ++     S + +            + Q+  L ++D  ++ L  
Sbjct: 37  IFALVHSTLKYKEYIEMIIK---KSKIKQ-----------GL-QMKKLKISDELLLLLVH 81

Query: 109 EQA-KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
           +         +     +     +          ++     +     E       ++    
Sbjct: 82  DLVFSAKGRIQSGKHPIKDAFLQHQTRLQAEFTKMKLKYRVKSAS-EFPTKEADEDETPI 140

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--------------RLKELPESIV 213
                 +         F+       L  V                           E + 
Sbjct: 141 RWFRINTIKVASPEKVFETNELLKNLQPVNSIDDIKDTGFIYHDEYIPNLYGIHPREKLT 200

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTL---NNLSVLDLCAAPGGKTAQL-----IVSGAK 265
           S   + +G   +QD ++  P  +        +  V+D CAAPG KT            + 
Sbjct: 201 STQAYIKGEVIIQDRASCFPGYILNQDSGDIHTEVIDACAAPGNKTTHSASFLPEDRSSV 260

Query: 266 VTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
           V A +   +R++ L+   ++    +      I   D     P    +        S +G+
Sbjct: 261 VYAFERDSKRVKILKTMCEKATGKSKKELIQITHADFTTTRPDDFPNVTGFVVDPSCSGS 320

Query: 322 IRRHPDVLWTRDTDDIV---------KSACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQ 371
                 +  ++  ++           K A FQ K++      + P    +V+S CS+   
Sbjct: 321 GIFGRALEDSQKEEEKQQEIDTTRLNKLAGFQFKIVKHA--LLFPSARKLVYSTCSIHPH 378

Query: 372 DSEEVVQKVL-----RSSPIPVELVPLNSAYWKSIDMAMALSP------EGWIRITPDML 420
           ++E VV  +L     +S    +E        W+        +       E   ++    +
Sbjct: 379 ENERVVVDLLTDPEIKSRGWHLEDRSKVIPNWERRGWKEEFTSIAGGDNEMCEKLAGGCV 438

Query: 421 EKIDGVSSGMDGFFAVALRR 440
             I     G  GFFA    R
Sbjct: 439 RSI-PKEDGGIGFFAACFVR 457


>gi|302561734|ref|ZP_07314076.1| transcription antitermination factor NusB [Streptomyces
           griseoflavus Tu4000]
 gi|302479352|gb|EFL42445.1| transcription antitermination factor NusB [Streptomyces
           griseoflavus Tu4000]
          Length = 143

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  ++    ++   +  +L      +               +V       
Sbjct: 1   MAARNTARKRAFQIIFEGDQRGAEVLTVLADWIRHARSDTRQPPVSEYTMQLVEGYAEHA 60

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + +LR+   +++++D   D  V+D  V+ AK    + 
Sbjct: 61  KRIDELIGQYSVGWTLDRMPVVDRSILRLGAYELIWVDETPDAVVLDEMVQLAKEFSTDE 120

Query: 119 HFA 121
             +
Sbjct: 121 SPS 123


>gi|313884728|ref|ZP_07818484.1| transcription antitermination factor NusB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620096|gb|EFR31529.1| transcription antitermination factor NusB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 158

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query: 3   SGMNARLVSSHLLSCV--MRKRISLTCLLDLEYGDSAFRLLSQRDQI--LVRAIVNVTLR 58
           +   AR V+   L           L   LD       F      +     +  ++N  + 
Sbjct: 7   NRSQARQVAVQALYDYTHFESNNDLDQALDFALESGHFPDQGYDEVANDYLYLLLNGVVD 66

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL---DVADYAVVDLAVEQAKRD 114
            L  IDA ++  L + +L R       +LRV+  ++LY+   DV     VD A+E +K  
Sbjct: 67  HLSEIDAHIEKYLKNWTLARIARIDLNILRVAFFELLYMDKEDVPARVTVDEAIELSKFF 126

Query: 115 KENRH 119
            +++ 
Sbjct: 127 SDDKS 131


>gi|301604340|ref|XP_002931821.1| PREDICTED: putative methyltransferase NSUN3-like [Xenopus
           (Silurana) tropicalis]
          Length = 322

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 105/295 (35%), Gaps = 23/295 (7%)

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
             E                L  +  ++ +  +L    +         +  +    P    
Sbjct: 37  SPECWQYAVLLNNFTSPWALEKQLHMKGY--RLLFQEIFCPQTLQCFINGNPGKFPSQRH 94

Query: 221 G-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALD--- 270
                  ++V +AS+ +PV      +  + LD+CAAPGGK+   +      ++   +   
Sbjct: 95  RTGKLKEYYVLNASSLLPVLALDVRDGENWLDMCAAPGGKSLAFLQCATPGRLHCNEPDL 154

Query: 271 -VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPD 327
             S+   + L   +           E+D           +D VLVDAPCS+  +     D
Sbjct: 155 PRSRWLKQTLESFVPETDRNHIFFSELDGRLLGKFHSGFYDKVLVDAPCSNDRSWLFSSD 214

Query: 328 VLWTRDTDDIVKS-ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           V          KS    Q +LL   +  ++PGG +V+S C+L + ++ +V+  +L S   
Sbjct: 215 VQQAAARISQRKSLPVLQTELLRSAVEALRPGGSLVYSTCTLSRAENTDVITNILNSCSN 274

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            V +   + A   S +   A      + + PD  +            F   L ++
Sbjct: 275 VVPMDLSSMASALSHEFTFAPGIPHGLLVLPDNGKSWGP-------MFVAKLLKV 322


>gi|289578288|ref|YP_003476915.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|297544568|ref|YP_003676870.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528001|gb|ADD02353.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
 gi|296842343|gb|ADH60859.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 140

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-QILVRAIVNVTLRFLP 61
           +   AR     +L      R  ++ + D  Y +         D +  +   V   +  L 
Sbjct: 2   NRTEAREWVVKMLYQYDISRFPISKIFDNFYKEK-----DPGDQKEYIENTVKGAIEHLE 56

Query: 62  RIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            ID  ++    +  L R       +LR S+ +++Y ++     ++ AVE AK+      
Sbjct: 57  EIDKEIEKYSQNWALNRMPRIDLAILRCSIYEMIYGNIPVNISINEAVEIAKKYSTEDS 115


>gi|148264233|ref|YP_001230939.1| NusB antitermination factor [Geobacter uraniireducens Rf4]
 gi|189035890|sp|A5G3J8|NUSB_GEOUR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146397733|gb|ABQ26366.1| NusB antitermination factor [Geobacter uraniireducens Rf4]
          Length = 145

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 1   MKSGMNARLVSSHLLS----CVMRKRISLTCLLDLEYGDSAFR-LLSQRDQILVRAIVNV 55
           M S    R ++   L      VM     L  +++     S        R       +VN 
Sbjct: 1   MSSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAELVNG 60

Query: 56  TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
            +     ID  ++    + S+ R       +LR++V ++ Y  D+     ++ A+E AK+
Sbjct: 61  VVANRAAIDQRIEEKSKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKK 120

Query: 114 DKENRHFA 121
              +   A
Sbjct: 121 FGADDSPA 128


>gi|311064653|ref|YP_003971378.1| n utilization substance protein B NusB [Bifidobacterium bifidum
           PRL2010]
 gi|310866972|gb|ADP36341.1| NusB N utilization substance protein B [Bifidobacterium bifidum
           PRL2010]
          Length = 223

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR  + + L     K    L+ L +      A   L          IV      
Sbjct: 1   MA-RSTARKRALNTLYEADEKGQDFLSLLAERIEEPGAQTPLPD----YAIEIVRGVADH 55

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ID +L+       + R     + +LR++  +I++  DV D   +D A+  AK   + 
Sbjct: 56  RREIDYMLNEHSTGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAKTLSDG 115

Query: 118 RHFA 121
              A
Sbjct: 116 DSPA 119


>gi|283782240|ref|YP_003372995.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
 gi|283440693|gb|ADB19135.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
          Length = 136

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR V   +L            + D+         +   D    R ++       
Sbjct: 1   MARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVELVD--FARDLLRGVRGRR 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D +L       +L R   + + +LR+   +IL+        ++ AVE AKR    R 
Sbjct: 59  KELDVLLQQKADHWTLDRMAVTDRNVLRLGAYEILHTQTPQRVAINEAVELAKRF-GARQ 117

Query: 120 FAKLVNSILRRV 131
             + VN IL R 
Sbjct: 118 SPQFVNGILDRF 129


>gi|74146901|dbj|BAE41405.1| unnamed protein product [Mus musculus]
 gi|74150466|dbj|BAE32268.1| unnamed protein product [Mus musculus]
          Length = 152

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                   FD VLVDAPCS+  +                       Q +L+   I  ++P
Sbjct: 1   MGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKAAYRIHQRKNLPVLQVELVRSAIKALRP 60

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-IRIT 416
           GG++V+S C+L K ++++V+ +VL S    V +     A   S D   A + +   + + 
Sbjct: 61  GGLLVYSTCTLSKAENQDVISEVLTSDSNIVPVDISGIARTFSQDFTFAPTDQKCSLLVI 120

Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440
           P+  +            +   L++
Sbjct: 121 PEKGKAWGP-------MYIAKLKK 137


>gi|13476941|ref|NP_108511.1| transcription antitermination protein NusB [Mesorhizobium loti
           MAFF303099]
 gi|22095963|sp|Q983A9|NUSB_RHILO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|14027704|dbj|BAB54297.1| N-utilization substance protein B [Mesorhizobium loti MAFF303099]
          Length = 155

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +  +          + +      + D    RAI+   
Sbjct: 5   NKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAILTGV 64

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +     ID V+   L     L R   +L+ +LR  V +++   DV    +V   V+ AK 
Sbjct: 65  VEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVDIAKA 124

Query: 114 DKENRHFAKLVNSILRR 130
                   KLVN++L R
Sbjct: 125 FY-EEDEPKLVNAVLDR 140


>gi|238760660|ref|ZP_04621785.1| N utilization substance protein B [Yersinia aldovae ATCC 35236]
 gi|238701125|gb|EEP93717.1| N utilization substance protein B [Yersinia aldovae ATCC 35236]
          Length = 138

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R +++        +DA+++
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVHAASLDALME 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRQLEELGQVERAVLRIALFELSKRQDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|194759190|ref|XP_001961832.1| GF15166 [Drosophila ananassae]
 gi|190615529|gb|EDV31053.1| GF15166 [Drosophila ananassae]
          Length = 506

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 16/204 (7%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRC 281
           ++ D  +++P           VLD CA+PGGK       +   ++   D+ + RL KLR 
Sbjct: 276 FMMDGGSTLPPLFLQVQPGERVLDACASPGGKSLVMLQTLHVDQLVCNDIQESRLNKLRK 335

Query: 282 NLD--------RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
            +         R         + DA +      FD +LVD PC++       +  ++   
Sbjct: 336 VMQEYLFDFKERWAGKRLIFSQSDARNLGDYDSFDKILVDVPCTTDRHVLNEQDNNIFKP 395

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387
               + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L+       I 
Sbjct: 396 TRIKERLRIPELQAGILTNCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKAFAEHNIT 455

Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411
             +  L+       D+     P+G
Sbjct: 456 ATIKDLSQQTALFSDVFKFEHPKG 479


>gi|134094270|ref|YP_001099345.1| transcription termination, L factor (N utilization substance
           protein B) [Herminiimonas arsenicoxydans]
 gi|133738173|emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB)
           [Herminiimonas arsenicoxydans]
          Length = 156

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L   +     +  + +       F    + D     A++  T++ + 
Sbjct: 15  TPRHRAREFALQGLYQWLLNNEDVRTIENHIRQAHGF---DKADAEHFDALLYGTVKQVG 71

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            + A L  ++   +          L +   ++  ++++    V++ AVE  K        
Sbjct: 72  ELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVELTKSFGGIDG- 130

Query: 121 AKLVNSILRRV 131
            K VN +L + 
Sbjct: 131 HKYVNGVLDKF 141


>gi|284032250|ref|YP_003382181.1| NusB antitermination factor [Kribbella flavida DSM 17836]
 gi|283811543|gb|ADB33382.1| NusB antitermination factor [Kribbella flavida DSM 17836]
          Length = 136

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     + + +   L     D+   +          A+V      +
Sbjct: 1   MSARSKARKRALDVLYESEVRGLPVGGTLADRVADNDPPVNE-----FTVALVEGVAEHI 55

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             ID +L       +L R     + +LR+ V ++L+ + V D   V  AV  A+    + 
Sbjct: 56  AAIDDLLSTHSVGWTLDRMPAVDRNVLRIGVYELLFDEQVPDVVAVSEAVALARDLSTDE 115

Query: 119 HFA 121
             A
Sbjct: 116 SPA 118


>gi|23012491|ref|ZP_00052562.1| COG0781: Transcription termination factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 169

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
            +   ARL     L  +      +   L         + +        +    R ++   
Sbjct: 14  NTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDGVVHPPAETAFFRDVLRGA 73

Query: 57  LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
           +     ID  LD  L     L R +  L+ +LR    ++++  DV   A +   V+ A  
Sbjct: 74  VEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRKDVPARAAISEYVDVAHS 133

Query: 114 DKENRHFAKLVNSILRR 130
                    +VN++L R
Sbjct: 134 FYGGDE-PGMVNAVLDR 149


>gi|322822037|gb|EFZ28209.1| hypothetical protein TCSYLVIO_5570 [Trypanosoma cruzi]
          Length = 339

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 30/284 (10%)

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           + +      +  +            L       G         +  +   F    ++  D
Sbjct: 51  LWNRFCQLPFAKVMANMKRMDEESLLQVFRCQEGC------EVAPPASDAFNVKAYYPLD 104

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR------RLEKLRC 281
            ++++ V+         VLDLCAA GG +  +    +   AL V++       RL +   
Sbjct: 105 YASALVVEQLEVGAFDRVLDLCAASGGNSIGIAQFLSADGALTVNEPNYERSVRLRRNIK 164

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST-GTIRRHPDVLWT---RDTDDI 337
                +     I + +A  +    ++  VLVDAPCS+    ++R      +         
Sbjct: 165 EYIPSNYVPVTITQRNAETWYAPSMYHRVLVDAPCSAERYLLQRDGGAPVSPKMWTEQTS 224

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
           ++ +     LLL+ +   +PGG VV+S  SL   +++  V+  LR +   VE+ P     
Sbjct: 225 LELSRRGCVLLLRALETCRPGGRVVYSTRSLSPLENDGAVEDALRRTRCQVEVHPTTLCN 284

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                    +       + PD       +       F   + ++
Sbjct: 285 MGEKTRYGHI-------VLPDTAGGFGPL-------FCCVIHKV 314


>gi|293392266|ref|ZP_06636600.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952800|gb|EFE02919.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 141

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      + S   +   E      + +   D    R +   T+  + 
Sbjct: 9   SPRRRARECAVQALYSWAISKNSPEIV---ELNFITEQDMKGVDTPYFRKLFRQTVENVE 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA + + L  +L       + +LR++V ++ +  +V    V++ A+E AK    +   
Sbjct: 66  AVDATMQYYLDRTLEELDPIEKAILRLAVYELQFEANVPYKVVINEAIEVAKVFGADES- 124

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 125 HKYINGVLDK 134


>gi|27468123|ref|NP_764760.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867014|ref|YP_188662.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis RP62A]
 gi|251810937|ref|ZP_04825410.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876054|ref|ZP_06284921.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis SK135]
 gi|293366519|ref|ZP_06613196.1| N utilization substance protein B [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|32129816|sp|Q8CP37|NUSB_STAES RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71153023|sp|Q5HP28|NUSB_STAEQ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27315669|gb|AAO04804.1|AE016748_38 transcription termination factor [Staphylococcus epidermidis ATCC
           12228]
 gi|57637672|gb|AAW54460.1| N utilization substance protein B [Staphylococcus epidermidis
           RP62A]
 gi|251805617|gb|EES58274.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295079|gb|EFA87606.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis SK135]
 gi|291319288|gb|EFE59657.1| N utilization substance protein B [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725378|gb|EGG61861.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU144]
 gi|329735255|gb|EGG71547.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU045]
 gi|329737366|gb|EGG73620.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU028]
          Length = 129

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  +AR+ +   L  +  K   LT    +E+       L   D   +  +V         
Sbjct: 2   SRKDARVQAFQTLFQLEIKETDLTIQEAIEFIKDDHSDL---DFDFIYWLVTGVKDHQIV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   S+ R   S + +LR++  +IL+ D     VV+ AVE  K+  ++ H+ 
Sbjct: 59  LDETIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVNEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRRVSR 133
             VN +L  ++ 
Sbjct: 119 -FVNGVLSNIND 129


>gi|258592181|emb|CBE68490.1| N utilization substance protein B homolog (Protein nusB) [NC10
           bacterium 'Dutch sediment']
          Length = 143

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 5/132 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++  LL  +      L           A        + L   +V  TL+  
Sbjct: 1   MGKRHRARELALSLLYQLEF--YPLEAFEVQSAAFWADHPAGPEIRSLTDELVQGTLQHQ 58

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
             ID VL   +    L R       +LR++  ++L Y        +D A+E AK     +
Sbjct: 59  KPIDEVLASHVEHWILSRLALVDLCVLRLAAFELLFYGKTPWKVAIDEAIELAKAF-GGK 117

Query: 119 HFAKLVNSILRR 130
                VN +L +
Sbjct: 118 DSGAFVNGVLDK 129


>gi|304320998|ref|YP_003854641.1| transcription antitermination protein NusB [Parvularcula
           bermudensis HTCC2503]
 gi|303299900|gb|ADM09499.1| transcription antitermination protein NusB [Parvularcula
           bermudensis HTCC2503]
          Length = 166

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++           +      + D     AIV   +    
Sbjct: 19  ARLGAVQALYQMEHAGTGVEAVIREFVDHRLGGEMDGSALHEADDEFFAAIVRGVVEGQR 78

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK-EN 117
           RID  +   L    +L R   + + +LR  + +++   D+    VVD  VE A     + 
Sbjct: 79  RIDPFIQRHLAEGWTLKRLDATARAILRAGLFELVSRPDIPWRTVVDEYVELANSFFEKG 138

Query: 118 RHFAKLVNSILR 129
               + +N++L 
Sbjct: 139 EAEPRFINAVLD 150


>gi|326793813|ref|YP_004311633.1| NusB antitermination factor [Marinomonas mediterranea MMB-1]
 gi|326544577|gb|ADZ89797.1| NusB antitermination factor [Marinomonas mediterranea MMB-1]
          Length = 162

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              +R ++   +        ++  +      +   + +S  D++  R ++         +
Sbjct: 23  RSASRGLALQAIYQWQMNHSAVNEIETQFTLE---QDMSACDKVYFRDLLQGVTAKAKEL 79

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAK 122
           D++ + +L  +L         +LR+   ++ + LDV     ++ +VE AK         K
Sbjct: 80  DSLFEELLDRALSELDAIELAVLRIGSYELAHRLDVPYRVAINESVELAKSF-GASESHK 138

Query: 123 LVNSILRR 130
            VN IL +
Sbjct: 139 YVNGILDK 146


>gi|88704433|ref|ZP_01102147.1| N utilization substance protein B [Congregibacter litoralis KT71]
 gi|88701484|gb|EAQ98589.1| N utilization substance protein B [Congregibacter litoralis KT71]
          Length = 150

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +   L        + T +      D  F ++   D    +A+++     +  +
Sbjct: 13  RRKARHYALQALYQWHMAGATATDIEAEFRTDYDFSVV---DLEYFQALIHGVPPLVEEL 69

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           D++L+ +L   +       + LLR+   ++   +DV    V++ +V  AK+      + 
Sbjct: 70  DSLLEPLLDREIRELDPIERSLLRMGGFELRDRIDVPYRVVINESVALAKKFGAAESYK 128


>gi|308801991|ref|XP_003078309.1| tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2)
           (ISS) [Ostreococcus tauri]
 gi|116056760|emb|CAL53049.1| tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2)
           (ISS) [Ostreococcus tauri]
          Length = 533

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 100/260 (38%), Gaps = 30/260 (11%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261
           +      + +      G   +Q  ++ +P          + +D CAAPG KT Q   ++ 
Sbjct: 220 VFPAGTDLHAHRLVKSGGVVLQGRASCLPAAALAPERGWACIDGCAAPGNKTTQLAAMVG 279

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCPKKLF----DAVLVDAPC 316
               V A D   +RL++L+ N      +A       D     P         A+L+D  C
Sbjct: 280 REGGVYAFDADAKRLKRLKENATTTGSHAIIRAKCQDFLTVDPANQQYASVRALLLDPSC 339

Query: 317 SSTGTIRRHPDVLWT---------------RDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
           S +GT     D++                  D D + K A FQ+K L    +F +    V
Sbjct: 340 SGSGTEVNRGDIMLREALCDDNDDENEVDAADHDRVEKLAAFQKKALTHAFNFPEVQ-RV 398

Query: 362 VFSNCSLDKQDSEEVVQKVL-RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
            +S CS+ ++++EEVV+ V+  ++    +LV    A+ +       LS           L
Sbjct: 399 SYSTCSVYEKENEEVVRDVMGAANERGFKLVHALPAWHRRGIAIDGLSESQAR-----CL 453

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            + D     M+GFF     R
Sbjct: 454 IRADPTEDDMEGFFVAVFER 473


>gi|310287767|ref|YP_003939025.1| antitermination factor NusB [Bifidobacterium bifidum S17]
 gi|309251703|gb|ADO53451.1| antitermination factor NusB [Bifidobacterium bifidum S17]
          Length = 223

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR  + + L     K    L+ L +      A   L          IV      
Sbjct: 1   MA-RSTARKRALNTLYEADEKGQDFLSLLAERIEEPGAQTPLPD----YAIEIVRGVADH 55

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ID +L+       + R     + +LR++  +I++  DV D   +D A+  AK   + 
Sbjct: 56  RREIDYMLNEHSTGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAKTLSDG 115

Query: 118 RHFA 121
              A
Sbjct: 116 DSPA 119


>gi|294628337|ref|ZP_06706897.1| transcription antitermination factor NusB [Streptomyces sp. e14]
 gi|292831670|gb|EFF90019.1| transcription antitermination factor NusB [Streptomyces sp. e14]
          Length = 147

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ + +  +L      S               +V       
Sbjct: 1   MAARNTARKRAFQILFEGDQRGVGVLTVLADWVRLSRSDTRQPPVSEYTMQLVEGYAEHA 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID +L    +  +L R     + +LR+   +++++D   D  V+D  V+ AK    + 
Sbjct: 61  TRIDELLAQYAVGWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAKEFSTDE 120

Query: 119 HFA 121
             +
Sbjct: 121 SPS 123


>gi|195350281|ref|XP_002041669.1| GM16796 [Drosophila sechellia]
 gi|194123442|gb|EDW45485.1| GM16796 [Drosophila sechellia]
          Length = 503

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKL-- 279
           ++ D ++++P           VLD CA+PGGKT      +    +   D+ + RL KL  
Sbjct: 273 FMMDGASTLPPLFLQVKPGERVLDACASPGGKTLLMLQTLHLDHMVCNDIQESRLNKLRK 332

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
                     DR           DA +    + FD +LVD PC++       +  ++   
Sbjct: 333 VMQEYLFDYKDRWAGKRLIFSHSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKP 392

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
               + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L+ 
Sbjct: 393 TRVKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQK 444


>gi|195159596|ref|XP_002020664.1| GL15584 [Drosophila persimilis]
 gi|194117614|gb|EDW39657.1| GL15584 [Drosophila persimilis]
          Length = 504

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 16/204 (7%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKL-- 279
           ++ D ++++P           VLD CA+PGGK+  L+ +         D+ + RL +L  
Sbjct: 274 FLMDGASTLPPLFLQVQPGERVLDACASPGGKSLLLLQTLHLDQLVCNDIQESRLNRLRR 333

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
                      R         + DA +    + +D +LVD PC++     + +  ++   
Sbjct: 334 LMQEFLFDYKQRSAARHLIFSQSDARNLDEYEQYDKILVDVPCTTDRHVVMEQDNNIFKP 393

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387
               + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L+       I 
Sbjct: 394 SRIKERLRIPELQAGILTNCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFVEHGIT 453

Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411
             +  L+       D+     P+G
Sbjct: 454 ATIKDLSRHTELFSDVFKFEHPKG 477


>gi|329903611|ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548271|gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 157

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                +R  +   L   +        +++    ++      + D +   A++  T++   
Sbjct: 16  TPRHRSREFALQGLYQWLLNNEDA-GVIEAHLREA--HGFDKADAVHFDALLYGTIKQAD 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +   L  ++   L +       +L +   ++  ++++    +++ +VE AK        
Sbjct: 73  ALRTDLLPLIDRPLSQLSPIEHAILLIGAYELKNHIEIPYKVIINESVELAKSFGGIDG- 131

Query: 121 AKLVNSILRRV 131
            K VN +L + 
Sbjct: 132 HKYVNGVLDKF 142


>gi|226949184|ref|YP_002804275.1| N utilization substance protein B [Clostridium botulinum A2 str.
           Kyoto]
 gi|254772625|sp|C1FPB3|NUSB_CLOBJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226844538|gb|ACO87204.1| N utilization substance protein B [Clostridium botulinum A2 str.
           Kyoto]
          Length = 143

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLE-----------YGDSAFRLLSQRDQILVRA 51
           +   +R V+  LL        +L   L+               D     L   D   V+ 
Sbjct: 2   NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61

Query: 52  IVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109
           I+         ID  +   L +  + R       +LR+   ++ +  D+ +   ++ A+E
Sbjct: 62  IIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAIE 121

Query: 110 QAKRDKENRHFAKLVNSILRRV 131
            AK+    +  A  +N +L ++
Sbjct: 122 LAKKYSGEKS-ATFINGVLGKM 142


>gi|313889626|ref|ZP_07823269.1| transcription antitermination factor NusB [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121923|gb|EFR45019.1| transcription antitermination factor NusB [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 143

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
            S  + R  +   L  +          L+       +  +S +D        +  +VN  
Sbjct: 7   NSRRDLRERAFQALFNMEHGG----DFLESSRFAYDYDKVSDQDHPLDVPAFLLTLVNGV 62

Query: 57  LRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
                 +DA++   L     + R   S + +LR+ + +I Y D   D   ++  +E AK+
Sbjct: 63  NNHKEELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEIAKK 122

Query: 114 DKENRHFAKLVNSILRRV 131
              +   AK +N +L + 
Sbjct: 123 Y-SDETSAKFINGLLSQF 139


>gi|194290431|ref|YP_002006338.1| transcription antitermination protein nusb [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224266|emb|CAQ70275.1| antitermination factor (N UTILIZATION SUBSTANCE B) (TRANSCRIPTIONAL
           ANTITERMINATOR) [Cupriavidus taiwanensis LMG 19424]
          Length = 172

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R ++   L   +  R     +  ++      +  ++ D+    A++N  +R   
Sbjct: 33  SARRRSRELALQGLYQWLLNR---NDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEA 89

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           R+ A  +  L  S+       +  L V   ++++ LD+    V++ AVE  K       +
Sbjct: 90  RLTAAFEPFLDRSVDELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGY 149

Query: 121 A 121
            
Sbjct: 150 K 150


>gi|115476098|ref|NP_001061645.1| Os08g0365900 [Oryza sativa Japonica Group]
 gi|38636850|dbj|BAD03090.1| putative nucleolar protein [Oryza sativa Japonica Group]
 gi|113623614|dbj|BAF23559.1| Os08g0365900 [Oryza sativa Japonica Group]
 gi|215717005|dbj|BAG95368.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640447|gb|EEE68579.1| hypothetical protein OsJ_27075 [Oryza sativa Japonica Group]
          Length = 589

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                     ++         FD VL+DAPCS+ G   R          + +   A +QR
Sbjct: 426 PGRNNCSGGRVENSKGFLPNSFDRVLLDAPCSALGL--RPRLFAGEETLESLRNHATYQR 483

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP----IPVELVPLNSAYWKSI 401
           ++  Q +  V PGG++V+S C+++  ++E +V+  L                      S 
Sbjct: 484 RMFDQAVKLVHPGGVIVYSTCTINPGENEALVRYALDKYKFLSLGSQHPKVGGPGIVGSF 543

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438
           + +     E W+      L +    SS +D  GFF    
Sbjct: 544 ERSTKKYTEEWLTKHESQLVQRFDPSSTLDTIGFFIAKF 582


>gi|57242527|ref|ZP_00370465.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis RM3195]
 gi|57016812|gb|EAL53595.1| transcription antitermination factor NusB [Campylobacter
           upsaliensis RM3195]
          Length = 132

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   AR     LL  +     +    +     +   R  +   +    ++ N  L  L
Sbjct: 1   MASRHQARQSVISLLYALELNGKN-DNFITEFLQEKKIRNEA---KNFTLSLYNGVLEHL 56

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D  +D  L  + + +  +  + +LR+   ++L+ D     V++ AVE  K    N +
Sbjct: 57  QSLDECIDVFLNENKIHQIGHIERAILRLGAFELLHTDTLAAIVINEAVELTKEM-ANEN 115

Query: 120 FAKLVNSILR 129
             KL+N +L 
Sbjct: 116 APKLINGVLD 125


>gi|194853921|ref|XP_001968251.1| GG24769 [Drosophila erecta]
 gi|190660118|gb|EDV57310.1| GG24769 [Drosophila erecta]
          Length = 503

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 16/204 (7%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279
           ++ D ++++P           VLD CA+PGGK       +    +   D+ + RL KL  
Sbjct: 273 FMMDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDHLVCNDIQESRLNKLRK 332

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
                     +R         + DA +    + FD +LVD PC++       +  ++   
Sbjct: 333 VMQEYLFDYKERWAGKRLIFSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKP 392

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387
               + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L+       I 
Sbjct: 393 TRVKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFTEHGIT 452

Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411
             +  L+       D+     P+G
Sbjct: 453 ATIKDLSRHTALFSDVFKFEHPKG 476


>gi|70922635|ref|XP_734453.1| sun-family protein [Plasmodium chabaudi chabaudi]
 gi|56507206|emb|CAH82024.1| sun-family protein, putative [Plasmodium chabaudi chabaudi]
          Length = 109

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 28/135 (20%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            D V+VDAPC+ TG +RR+P++ +    + + +    QRK+  + + ++K  G + +  C
Sbjct: 2   MDIVVVDAPCTGTGALRRNPEMKYKFTNEKLYEYMDLQRKIFEKALFYLKKNGKIAYITC 61

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           S+   ++    +   +   + +   P +S                               
Sbjct: 62  SILDAENVHQAKYFCQKHNLYLSEPPFHS----------------------------LPQ 93

Query: 427 SSGMDGFFAVALRRL 441
           S  MDGFF     R 
Sbjct: 94  SKSMDGFFLAIFERK 108


>gi|296284343|ref|ZP_06862341.1| transcription termination factor [Citromicrobium bathyomarinum
           JL354]
          Length = 153

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 8/128 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
            +   ARL +   L     +   L  LLD  +     R +        +      IV   
Sbjct: 9   TARSAARLAAVQALYQQDMEGTKLPKLLDEFHQHRLGREIEGDTYADAEVPFFDDIVRGV 68

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
                 ID  L   L    SL R   ++ Q+LR    +++   D+   AV+   V+ AK 
Sbjct: 69  DARREEIDLQLSEKLAQGWSLKRLDKTMLQVLRCGTYELIARADIPTGAVISEYVDVAKA 128

Query: 114 DKENRHFA 121
             ++R   
Sbjct: 129 FFDDREAK 136


>gi|255577546|ref|XP_002529651.1| conserved hypothetical protein [Ricinus communis]
 gi|223530877|gb|EEF32738.1| conserved hypothetical protein [Ricinus communis]
          Length = 392

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC---- 342
            L   ++ ++   +      +D VLVDA C+  G+IR               +       
Sbjct: 240 GLSKSELYQIVCGNELSNCGYDKVLVDAECTHDGSIRHIQKFEHWGWETLYQRVLQAERS 299

Query: 343 -----FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q KLL  G   ++ GG+VV+S CSL    +E+VVQ+ L+ +P     +     +
Sbjct: 300 DSLTSLQLKLLTNGFKLLRVGGLVVYSTCSLTVSQNEDVVQQFLKENPSAGREIDTAQNW 359

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
                        G I+       + D V+S   G F     +L  
Sbjct: 360 P---------CKSGRIQ----KTLRFDSVTSQTSGLFVARFIKLAT 392


>gi|6324306|ref|NP_014376.1| hypothetical protein YNL022C [Saccharomyces cerevisiae S288c]
 gi|1730712|sp|P53972|YNC2_YEAST RecName: Full=Uncharacterized protein YNL022C
 gi|1301853|emb|CAA95884.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|151944502|gb|EDN62780.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|285814629|tpg|DAA10523.1| TPA: hypothetical protein YNL022C [Saccharomyces cerevisiae S288c]
          Length = 490

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 104/351 (29%), Gaps = 75/351 (21%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209
            W +      +       +         + +      + W+  +   +     I      
Sbjct: 154 RWIRINPLKCHPNGETEPVLAELRKKFTLKV------DKWSELVPGSIYYDEFIPNLFGI 207

Query: 210 ES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------- 259
                I +   +  G   +QD ++  P  +     +  V+D C+APG KT          
Sbjct: 208 HPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPE 267

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFD---AVLVD 313
               +  ++ A +    R + L+  +          +   D       + +      +VD
Sbjct: 268 PPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEKYKDVTCFIVD 327

Query: 314 APCSSTGTIRRHPDVLWTRD-------------------------TDDIVKSACFQRKLL 348
             CS +G   R     + R                             + K + FQ +++
Sbjct: 328 PSCSGSGIFGRKFFDSFNRRKIDDKDDDGGIVPDEQEEFIAKEELQTRLAKLSSFQFQMV 387

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI---------PVELVPLNSAYWK 399
              +SF      +V+S CS+  +++E VV  +L    +           E++P      K
Sbjct: 388 KHAMSFPAAK-KIVYSTCSIHAEENERVVIDLLLDKSVREWGWKVAPKREVIPSWPRRGK 446

Query: 400 SIDMAMALSP----------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             +                 EG IR  P         S G  GFFAV   R
Sbjct: 447 VEEFEEVFRDGVTYDPQQLAEGCIRALP--------KSDGGIGFFAVCFER 489


>gi|29833402|ref|NP_828036.1| transcription antitermination protein NusB [Streptomyces
           avermitilis MA-4680]
 gi|39931877|sp|Q827R4|NUSB_STRAW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29610525|dbj|BAC74571.1| putative transcription termination protein [Streptomyces
           avermitilis MA-4680]
          Length = 144

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ + +  +L      S               +V    + +
Sbjct: 1   MAARNTARKRAFQILFEGDQRGVDVLTVLADWIRHSRTDTRQPPVSEYTMQLVEGYAKKV 60

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++    +  +L R     + +LR+   ++L++D   D  V+D AV+ AK    + 
Sbjct: 61  NRIDELISQYAVGWTLDRMPVVDRNILRLGTYELLWVDETPDAVVLDEAVQLAKEFSTDD 120

Query: 119 HFA 121
             A
Sbjct: 121 SPA 123


>gi|154253354|ref|YP_001414178.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1]
 gi|154157304|gb|ABS64521.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1]
          Length = 171

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 9/130 (6%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           L +   L  +      L  +++               +   D++    +V   +R    +
Sbjct: 24  LFAVQALYQMDIAATPLDEVVEEFVEHRLEEPEGDNEIFAADKVHFEDVVRGVVREQREL 83

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           D  ++  L    SL R   +L+ +LR    ++    DV    V++  VE A    E    
Sbjct: 84  DVQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEGDE- 142

Query: 121 AKLVNSILRR 130
             +VN++L R
Sbjct: 143 PGVVNAVLDR 152


>gi|254460442|ref|ZP_05073858.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2083]
 gi|206677031|gb|EDZ41518.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 157

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNV 55
           MKS   AR  +   L  +     +   ++          +         D  L  ++VN 
Sbjct: 13  MKS--AARFYAVQALYQMEVSGQTTDKIIVEFLDHRFGAVYEDMEFVEGDVDLFSSLVND 70

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +    +ID + D  L     + R   +L+ L R + A+++  D     V+   V+ A  
Sbjct: 71  AVNHQAQIDQMTDRALVAKWPIARIDPTLRGLFRAAGAELVASDTPPKVVIKEFVDIAAA 130

Query: 114 DKENRHFAKLVNSILRR 130
                  ++ VN++L  
Sbjct: 131 FFPEGKESRFVNAVLDH 147


>gi|82701147|ref|YP_410713.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196]
 gi|119390789|sp|Q2YD50|NUSB_NITMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|82409212|gb|ABB73321.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196]
          Length = 158

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++   L        S   +         F    + D+     +++  L   P ++  
Sbjct: 24  ARELALQGLYQWCVAGGSAGTIEAQLRDTEEF---PKTDEEYFSRLLHGVLMQAPELEKE 80

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +   L             +L +   ++  + ++   AV++ AVE AK         K VN
Sbjct: 81  IQPCLDRPFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELAKAYGGTHG-HKYVN 139

Query: 126 SILRR 130
            +L +
Sbjct: 140 GVLDK 144


>gi|239816087|ref|YP_002944997.1| NusB antitermination factor [Variovorax paradoxus S110]
 gi|259514920|sp|C5CPZ2|NUSB_VARPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|239802664|gb|ACS19731.1| NusB antitermination factor [Variovorax paradoxus S110]
          Length = 181

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +    +    +D    D       + D     A+++ ++    
Sbjct: 35  SNRSRAREFALQALYQHLV-GRNDPTEIDHFTRD--LAGFHKADAAHYDALLHGSIEGAE 91

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ++DA++  +L             ++ + V +  + LDV    V++  +E AK        
Sbjct: 92  QLDALIRPLLDRKFEEISPIEHAVMWIGVYEFQHCLDVPWRVVLNECIELAKEFGGTDGH 151

Query: 121 A 121
            
Sbjct: 152 K 152


>gi|95929563|ref|ZP_01312305.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
 gi|95134260|gb|EAT15917.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
          Length = 152

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 19/147 (12%)

Query: 1   MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL------------LSQRDQ 46
           M  G   N R  +  +L  +  +   L  +L   +G+  F              LS  D 
Sbjct: 1   MAKGTRRNGREYALKILYSLYDQDAPLDEVLSDFWGNFRFSNDVLGEPEEPQSPLSD-DV 59

Query: 47  ILVRA-IVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAV 103
           I     +V      L  IDA+L     +  L R       L+R++  +++Y+D      V
Sbjct: 60  IFFSEQLVKGVYEHLEEIDAMLLDTSKNWALDRMPRLDLSLMRMACYELIYVDKTPTNVV 119

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRR 130
           ++ A+E AKR    +     +N +L R
Sbjct: 120 INEAIEIAKRY-GTKDTPAFLNGVLDR 145


>gi|16759395|ref|NP_455012.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142833|ref|NP_806175.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213027238|ref|ZP_03341685.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213163226|ref|ZP_03348936.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213418053|ref|ZP_03351130.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213579887|ref|ZP_03361713.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213615893|ref|ZP_03371719.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650170|ref|ZP_03380223.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855378|ref|ZP_03383618.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289804986|ref|ZP_06535615.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289825061|ref|ZP_06544413.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|22095954|sp|Q8Z8X6|NUSB_SALTI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|25299803|pir||AB0554 N utilization substance protein B [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501686|emb|CAD08874.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138465|gb|AAO70035.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 139

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L      +     + D+EY   A + +   D +  R +++    
Sbjct: 1   MKPAARHRARECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               +D ++   L   L       + +LR+++ ++    DV     ++ A+E AK     
Sbjct: 58  NSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 EDSHKFVNGVLDK 129


>gi|15837557|ref|NP_298245.1| transcription antitermination protein NusB [Xylella fastidiosa
           9a5c]
 gi|22095972|sp|Q9PES3|NUSB_XYLFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9105883|gb|AAF83765.1|AE003934_7 transcription termination factor [Xylella fastidiosa 9a5c]
          Length = 157

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           +            ++     + A+      D      +V   L     +D  L   L  +
Sbjct: 33  VYAWQISGGVAKQVIAHFAHEQAY---EVADLAYFEDLVEGVLTHCAELDEKLTPYLDRT 89

Query: 75  LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +       + +LR+   ++LY  DV    V++ A+  AKR   +++    VN +L R
Sbjct: 90  IEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRF-GSKYGHTYVNGVLDR 145


>gi|332703471|ref|ZP_08423559.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553620|gb|EGJ50664.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 161

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 7   ARLVSSHLLSCVMRKRIS----LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           AR  +  +L  +     S    +               L ++       +V  T      
Sbjct: 12  AREKAFQVLYGIEFTDSSHLGAVRDAFVEYPRPERQTKLDEKSDTFAWELVKGTWESKAE 71

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           +D ++     +  + R       +LR+ + +IL+  D+     ++ AVE AK    + H 
Sbjct: 72  LDGIIGRFSQNWKVTRIAKVDLTILRLGMFEILHRPDIPLKVAINEAVELAKEF-GDEHS 130

Query: 121 AKLVNSILR 129
              VN IL 
Sbjct: 131 RNFVNGILD 139


>gi|125986483|ref|XP_001357005.1| GA18402 [Drosophila pseudoobscura pseudoobscura]
 gi|54645331|gb|EAL34071.1| GA18402 [Drosophila pseudoobscura pseudoobscura]
          Length = 504

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 16/204 (7%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKL-- 279
           ++ D ++++P           VLD CA+PGGK+  L+ +         D+ + RL +L  
Sbjct: 274 FLMDGASTLPPLFLQVQPGEKVLDACASPGGKSLLLLQTLHLDQLVCNDIQESRLNRLRR 333

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
                      R         + DA +    + +D +LVD PC++     + +  ++   
Sbjct: 334 LMQEFLFDYKQRSAARHLIFSQSDARNLDEYEQYDKILVDVPCTTDRHVVMEQDNNIFKP 393

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387
               + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L+       I 
Sbjct: 394 SRIKERLRIPELQAGILTNCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFVEHGIT 453

Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411
             +  L+       D+     P+G
Sbjct: 454 ATIKDLSRHTELFSDVFKFEHPKG 477


>gi|325290021|ref|YP_004266202.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271]
 gi|324965422|gb|ADY56201.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271]
          Length = 146

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR  +  +L  +      ++ +       +    L ++ Q   + ++  TL   
Sbjct: 1   MSRRL-ARETALKVLYQIDMTGE-ISEMDKNIEYWAGEFNLPEKHQPFTKQLIEGTLSKK 58

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             ID ++       +L R     + L+R++  ++LYL        ++ A+E AK+   + 
Sbjct: 59  EEIDHMIGQNAHEWALDRMSVVDRNLMRLASYEMLYLRNTPQRVSLNEAIELAKKFGGDD 118

Query: 119 HFAKLVNSILRRVSREKIELL 139
             AK +N IL  +  ++ +  
Sbjct: 119 S-AKFINGILDNLMTQEEKEW 138


>gi|307265164|ref|ZP_07546723.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919786|gb|EFN50001.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 140

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR     +L      R+ ++ + +  Y ++         +  +   V   +  L  
Sbjct: 2   NRTEAREWVVKMLYQYDVSRLPISKIFENFYKEND----PGEQKEYIENTVIGAIEHLEE 57

Query: 63  IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           ID  ++    +  L R       +LR S+ ++ Y ++     ++ AVE AK+      
Sbjct: 58  IDKEIERYSQNWALNRMPKIDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYSTEDS 115


>gi|332523180|ref|ZP_08399432.1| transcription antitermination factor NusB [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314444|gb|EGJ27429.1| transcription antitermination factor NusB [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 143

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
            S  + R  +   L  +          L+       +  +S +D        +  +VN  
Sbjct: 7   NSRRDLRERAFQALFNMEHGG----DFLESSQFAYDYDKVSDQDHPLDIPAFLLTLVNGV 62

Query: 57  LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
                 +DA++   L    S+ R   S + +LR+ + +I Y D   D   ++  +E AK+
Sbjct: 63  NNHKDELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEIAKK 122

Query: 114 DKENRHFAKLVNSILRRV 131
              +   AK +N +L + 
Sbjct: 123 Y-SDETSAKFINGLLSQF 139


>gi|315646327|ref|ZP_07899447.1| NusB antitermination factor [Paenibacillus vortex V453]
 gi|315278526|gb|EFU41842.1| NusB antitermination factor [Paenibacillus vortex V453]
          Length = 152

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR---D----QILVRAIV 53
           MK  + AR +    L  +    +     + +   ++A    ++R   D    +  V  +V
Sbjct: 1   MKRRV-AREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGDEVQMKEYVLQLV 59

Query: 54  NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQA 111
           N T      ID +L   L    + R     +Q+LR++V ++    DV     V+ A+E +
Sbjct: 60  NGTWESKESIDELLAHYLKGWQVSRLSRVDRQILRLAVYELSSREDVPGKVAVNEAIELS 119

Query: 112 KRDKENRHFAKLVNSILRRVSR 133
           K         K VN +L R+ +
Sbjct: 120 K-HFGTDESGKFVNGVLGRMIQ 140


>gi|303389837|ref|XP_003073150.1| Nop2-like nucleolar protein [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302295|gb|ADM11790.1| Nop2-like nucleolar protein [Encephalitozoon intestinalis ATCC
           50506]
          Length = 364

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 19/258 (7%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
           E     L        G+      + IV    +  G + +Q+ S+ +P  +        V+
Sbjct: 122 EKDIDFLKHEKTCIDGVYKILDSKDIVFSEEYKNGKFLIQNISSCLPAHILNPDEGSRVI 181

Query: 247 DLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           D C+APG KT+    ++ +  K+ A +  K R + L+  L+RL +   D+IE D     P
Sbjct: 182 DTCSAPGNKTSQLAMIMKNTGKIYAFERDKARAKTLKIRLERLGVNNTDVIEEDFMKTNP 241

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +   D   +    S +G+        +  D + I     FQ  ++   + F KP   +++
Sbjct: 242 EDFKDIRYILCDPSCSGSGMHFG---YKMDKERIEGLKSFQVGIVKHALKF-KPE-KLMY 296

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423
           S CS  K++ EEVV+++L+      EL  ++  +  S       S           + + 
Sbjct: 297 SVCSNHKEEGEEVVEEILK--DSEYELEDISMFWGPSCPSEFPFSRN---------VIRC 345

Query: 424 DGVSSGMDGFFAVALRRL 441
               +G  GFF    RR 
Sbjct: 346 RRDDNGATGFFIALFRRK 363


>gi|301300970|ref|ZP_07207135.1| transcription antitermination factor NusB [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851437|gb|EFK79156.1| transcription antitermination factor NusB [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 131

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  S  + R ++   L  +     +     +  Y +      +  D   +  +V+  L  
Sbjct: 1   MSLSRHDIRKIAFQTLFAL---GSNPDANSEDIYRELLDEDNNDSDLSYLNELVDGVLDH 57

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
              ID  +   L  +  + R   +   +LR+++ +I Y DVA    V+ AVE AK   ++
Sbjct: 58  QSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYSDVASKIAVNEAVELAKEFSDD 117

Query: 118 RHFAKLVNSILRR 130
           + +   VN+IL+ 
Sbjct: 118 KSYK-FVNAILQN 129


>gi|328947921|ref|YP_004365258.1| Fmu (Sun) domain protein [Treponema succinifaciens DSM 2489]
 gi|328448245|gb|AEB13961.1| Fmu (Sun) domain protein [Treponema succinifaciens DSM 2489]
          Length = 277

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 9/196 (4%)

Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259
              I+     E++ +   +     +  D ++ +        ++  +LDLCAAPGGKT  L
Sbjct: 15  WEKIKSSLASETLHAELSYKNCESYFLDPASIVAALCLPVKDSEKILDLCAAPGGKTLVL 74

Query: 260 IVSGAKV---TALDVSKRRLEKLRCNLDRLHLY----AEDIIEMDAFDYCPK--KLFDAV 310
             +        + + S  R ++L   ++            +   D   +C +  + ++++
Sbjct: 75  AGNKNDDAVLFSNERSPSRKKRLSKVVESSLPPEISCNVKVCLSDGASWCRRVSECYESI 134

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           L+DAPCSS   +      L       I   +  Q  LL      +K  G ++++ C+L  
Sbjct: 135 LLDAPCSSERHVLNDKKYLEQWTPSRIKTVSMEQWALLSCAFRLLKKNGFLLYATCALCP 194

Query: 371 QDSEEVVQKVLRSSPI 386
           Q+++ VV K+L+  P 
Sbjct: 195 QENDGVVSKLLKKFPD 210


>gi|300312879|ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075664|gb|ADJ65063.1| transcription antiterminator (L factor) transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 5/131 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L   +        +         F    + D      ++   +R   
Sbjct: 15  TPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGF---DKADAEHFDTLLTGAIRDAE 71

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
           ++ A L  ++   +          L +   ++  ++++    V++ AVE  K        
Sbjct: 72  KLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELTKSFGGIDG- 130

Query: 121 AKLVNSILRRV 131
            K VN +L R 
Sbjct: 131 HKYVNGVLDRF 141


>gi|317154514|ref|YP_004122562.1| transcription antitermination factor NusB [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944765|gb|ADU63816.1| transcription antitermination factor NusB [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 151

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 8   RLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           R ++  +L        +  +      E         S+  +   RA+V    + L RIDA
Sbjct: 17  RTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAREFARALVLGVDKNLARIDA 76

Query: 66  VLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +          R       +LR+S+ ++L+ D+   A ++ A+E +K    +      V
Sbjct: 77  AIGEHSQHWKFDRIAVIELSILRLSLYEMLFTDIPVKAAINEAIELSK-LFGDEKSRGFV 135

Query: 125 NSILR 129
           N IL 
Sbjct: 136 NGILD 140


>gi|159482044|ref|XP_001699083.1| hypothetical protein CHLREDRAFT_177717 [Chlamydomonas reinhardtii]
 gi|158273146|gb|EDO98938.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 474

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
             P + FDA+L+DAPCS+ G     P +        + + A  QR+L+   +  ++ GG 
Sbjct: 312 CFPPESFDALLLDAPCSALGL---RPRLQQQAGALYLRQCAAAQRRLVDGAVRLLRVGGA 368

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V+S C+++  ++E VV+ +L S    + LVP    +     +A         R+ P +L
Sbjct: 369 MVYSTCTINPGENEAVVRYLLDSYGGSMRLVPAGPPFLGGPGLA------HDRRVRPAVL 422

Query: 421 EKIDGV 426
            +  G 
Sbjct: 423 LRRQGH 428


>gi|281202268|gb|EFA76473.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
          Length = 760

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 17/110 (15%)

Query: 341 ACFQRKLLLQGI--SFVKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPIPVELVPLNS 395
           A FQ  ++        VK    VV+S CS+ + ++E+VVQ+    L        LV +  
Sbjct: 466 ADFQLSIIRHAFAFPCVK---RVVYSTCSIHQVENEDVVQRALSELNKDKETWRLVNILP 522

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL-IQP 444
            + KS  +++  + E  +R++P         +    GFF     ++  +P
Sbjct: 523 HWKKSRGLSLFKNSEYCLRLSP--------ANDNTIGFFVACFEKINPKP 564


>gi|54307996|ref|YP_129016.1| transcription antitermination protein NusB [Photobacterium
           profundum SS9]
 gi|81615463|sp|Q6LU11|NUSB_PHOPR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|46912422|emb|CAG19214.1| Putative NusB protein [Photobacterium profundum SS9]
          Length = 151

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 15/144 (10%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQI 47
           MK     NAR  +   +      + ++  +      D  F     +           D  
Sbjct: 1   MKPAARRNARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPILAAPHTDLN 60

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDL 106
               ++N  ++    +D+ +   L   L         LLR+++ ++    DV    V++ 
Sbjct: 61  YFHDLLNGVVQNHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMTKREDVPYKVVINE 120

Query: 107 AVEQAKRDKENRHFAKLVNSILRR 130
           A+E AK         K VN +L +
Sbjct: 121 AIELAK-IFGAEDSHKFVNGVLDK 143


>gi|259416248|ref|ZP_05740168.1| transcription antitermination factor NusB [Silicibacter sp.
           TrichCH4B]
 gi|259347687|gb|EEW59464.1| transcription antitermination factor NusB [Silicibacter sp.
           TrichCH4B]
          Length = 164

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVT 56
           ++   ARL +   L  + +   S   ++                 ++ D  L R +VN  
Sbjct: 19  QARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYAEGDTKLFRKLVNDA 78

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
           + +  +ID + D  L     + R   +L+ L R + A+ +  D     V++  V+ A+  
Sbjct: 79  VNYQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPVKVVINEYVDIARAF 138

Query: 115 KENRHFAKLVNSILRRV 131
                 A  VN++L  +
Sbjct: 139 FPEGREASFVNAVLDHM 155


>gi|218289636|ref|ZP_03493856.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1]
 gi|218240286|gb|EED07469.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1]
          Length = 165

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 4/145 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR  +   L  V+  +  L     +    +   L +  D   +  +V+ T R L  
Sbjct: 2   TRHEARECALQALC-VLDVQRDLGSAEAIASVLAERGLDAGGDWAYIEELVDGTRRHLGE 60

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID +L   +   S  R     + +LR++  ++L+  ++   + +D AV+ AK        
Sbjct: 61  IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTF-ATEQS 119

Query: 121 AKLVNSILRRVSREKIELLQRIAGI 145
            + VN +L ++     +  +  A  
Sbjct: 120 GRFVNGVLAKLLPAVADRRRADACE 144


>gi|332981364|ref|YP_004462805.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
 gi|332699042|gb|AEE95983.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
          Length = 134

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +  L+  +  +      +L+  +   A   L++ D   +  IV + L     
Sbjct: 2   SRRQARQDAVCLMYEIDMQDGDSDDILERFFNTHA---LNEADAKYIDEIVKLALEHRDD 58

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ID  ++      +         +LR++ A++LY+  V     +D AVE AKR   +    
Sbjct: 59  IDRGIEQSCGRKIEYLAKMDLAILRIAAAEMLYMPSVPHRVSIDEAVELAKRY-GDDMSP 117

Query: 122 KLVNSI 127
             +N +
Sbjct: 118 TFINGV 123


>gi|317124726|ref|YP_004098838.1| NusB antitermination factor [Intrasporangium calvum DSM 43043]
 gi|315588814|gb|ADU48111.1| NusB antitermination factor [Intrasporangium calvum DSM 43043]
          Length = 137

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ ++   LLD    D   R  +         +V   +   
Sbjct: 1   MSARSKARARALDILFEADQRGLNAEVLLDERLRDPESRAGNN---PYTADLVRGVVGRW 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             IDA L       +L R     + +LRV   ++L+ D    A           +     
Sbjct: 58  RDIDAALTDYSQGWTLDRMPAVDRAILRVGAWEVLFNDDIPDAAAIAEAVALATELSTDE 117

Query: 120 FAKLVNSILRR 130
               VN +L R
Sbjct: 118 SPGFVNGLLAR 128


>gi|237747092|ref|ZP_04577572.1| transcription termination [Oxalobacter formigenes HOxBLS]
 gi|229378443|gb|EEO28534.1| transcription termination [Oxalobacter formigenes HOxBLS]
          Length = 159

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                +R  +   L   +  +     +++       F    + D      +V+ T+    
Sbjct: 18  SPRHRSREFALQGLYEWLLNKDDAPVIIEHIRQAHGF---DKADTGHFVTLVSGTIHQAE 74

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            + + +   +  SL         +L +   ++  ++++    V++ AVE  K        
Sbjct: 75  TLRSEIVPHIDRSLDELSPVEHAILLLGAYELKNHIEIPYRVVINEAVELTKSFGGIDGH 134

Query: 121 A 121
            
Sbjct: 135 K 135


>gi|159044792|ref|YP_001533586.1| N utilization substance protein B-like protein [Dinoroseobacter
           shibae DFL 12]
 gi|157912552|gb|ABV93985.1| N utilization substance protein B-like protein [Dinoroseobacter
           shibae DFL 12]
          Length = 159

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVTLRFL 60
            ARL +   L  +     S   ++          +  + +       L R  V   + + 
Sbjct: 17  AARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYEEGEMAEGHVTLFRTTVGEAVNWQ 76

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            +ID + D  L     + R   +L+ L R + A+++  D     V++  V+ A+    + 
Sbjct: 77  AKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELVRADTPPKVVINEYVDLARAFFPDG 136

Query: 119 HFAKLVNSILRRV 131
              K VN++L  +
Sbjct: 137 KEPKFVNAVLDHM 149


>gi|261867676|ref|YP_003255598.1| transcription antitermination protein NusB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413008|gb|ACX82379.1| transcription antitermination factor NusB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 141

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      + S   +   E      + +   D    R +   T+  + 
Sbjct: 9   SPRRRARECAVQALYSWAISKNSPEIV---ELNFITEQDMKGVDTPYFRKLFRQTVENVE 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA +   L  +L       + +LR++V ++ +  +V    V++ A+E AK    +   
Sbjct: 66  AVDATMQCYLDRTLEELDPIEKAILRLAVYELQFEANVPYKVVINEAIEVAKVFGADES- 124

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 125 HKYINGVLDK 134


>gi|321259261|ref|XP_003194351.1| nucleus protein [Cryptococcus gattii WM276]
 gi|317460822|gb|ADV22564.1| nucleus protein, putative [Cryptococcus gattii WM276]
          Length = 542

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 86/252 (34%), Gaps = 38/252 (15%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTAQL---IVSGAKVTAL 269
             +  G   +QD ++  P ++            LD  +APG KT+ +   + +  K+ A 
Sbjct: 213 EWYEGGGVILQDKASCFPARVLMEGWVEGEGECLDATSAPGNKTSYVSALMANRGKLHAF 272

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRR- 324
           + S  R + L   L +           D     PK         +L+D  CS +G + R 
Sbjct: 273 ERSPNRFKTLEKMLAKARCSNVQAQRADFTGSDPKSKEFRNVTRILLDPSCSGSGIVNRL 332

Query: 325 ------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
                       ++    + K A FQ +++L    F      +V+S CS+  ++ E VV 
Sbjct: 333 DYLVDDDAQESDSKTER-LEKLASFQLQMILHAFKF-PSAQRIVYSTCSIHAEEDERVVM 390

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----------GWIRITPDMLEKIDGVSS 428
             L+S+        L S             PE          G IR  P           
Sbjct: 391 AALQSNIAKENGWGLASRESVLPKWERRGRPEEMEGDEELSNGVIRCLP---------ED 441

Query: 429 GMDGFFAVALRR 440
             +GFF     R
Sbjct: 442 KTNGFFVACFVR 453


>gi|326317709|ref|YP_004235381.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374545|gb|ADX46814.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 186

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R  +   L   +  R        ++          + D     A+++  +    
Sbjct: 37  SARSRSRAFALQALYQHIVGR---NEATAIDVFTRDLSGFHKADAAHYDALLHGCIENAE 93

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +DA++   L  +L          + + V +  + LDV    V++  VE AK        
Sbjct: 94  TLDALITPKLDRTLEEISPIEHATMWIGVYEFQHCLDVPWRVVINECVELAKEFGGTDGH 153

Query: 121 A 121
            
Sbjct: 154 K 154


>gi|39996792|ref|NP_952743.1| N utilization substance protein B [Geobacter sulfurreducens PCA]
 gi|81702305|sp|Q74CI1|NUSB_GEOSL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39983680|gb|AAR35070.1| N utilization substance protein B [Geobacter sulfurreducens PCA]
 gi|298505803|gb|ADI84526.1| transcription termination factor NusB [Geobacter sulfurreducens
           KN400]
          Length = 138

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R ++  +L            LL+L   +S     +   +     +V   L   
Sbjct: 1   MGARRLGRELALQMLYSRDYAAGEAAPLLELVLDESEPGAAAG--RSFADDLVRGVLEHR 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID  +     + S+ R       +LR+++ ++L+  D+     ++ A+E AK+     
Sbjct: 59  QEIDTAITGASKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAIEVAKKF-GTE 117

Query: 119 HFAKLVNSILR 129
                +N IL 
Sbjct: 118 DSPAFINGILD 128


>gi|298245582|ref|ZP_06969388.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
 gi|297553063|gb|EFH86928.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
          Length = 147

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR+V+   L             L++    +  R L  +     + +     + L  I
Sbjct: 5   RRQARMVALQTLYEYDMVHHDP---LEILQRHAEERNLHAKVVEYAQELAEGVCKHLADI 61

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           DA +        L +     + +LR+++ +IL+ + V   A ++ AVE AK    +   +
Sbjct: 62  DAHIQSAAREWPLQQMARVDKNILRLAIYEILFNNTVPAKAAINEAVELAK-LFGSDTSS 120

Query: 122 KLVNSILRRVSREKIELLQRIA 143
           + +N +L  +     +     A
Sbjct: 121 RFINGVLGTIFNRAQQQPTPKA 142


>gi|34556732|ref|NP_906547.1| transcription antitermination protein NusB [Wolinella succinogenes
           DSM 1740]
 gi|39931695|sp|Q7MAE9|NUSB_WOLSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|34482446|emb|CAE09447.1| TRANSCRIPTION TERMINATION PROTEIN [Wolinella succinogenes]
          Length = 135

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL            +          + +  R Q     + + T+  L
Sbjct: 1   MATRAQAREAVVSLLYAYDMGNT---EIRKFAIELLEEKRIKNRQQEFALELFDGTIAHL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID  +   L      R     + +LR+   +I+Y  V    +++ AVE +K    N +
Sbjct: 58  GEIDEEIKKHLKEWDFSRIGDMERAILRLGTFEIVYSGVDRAVIINEAVELSKTF-GNDN 116

Query: 120 FAKLVNSILR 129
             + VN +L 
Sbjct: 117 SPRFVNGVLD 126


>gi|269795098|ref|YP_003314553.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542]
 gi|269097283|gb|ACZ21719.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542]
          Length = 138

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ +    LL     +        +       IV   L  L
Sbjct: 1   MGARTKARKRALDVLFEAEQRHLDPITLLADRVAEPGTEASLPQ---YSVDIVEGVLEQL 57

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID +L+      SL R     + LLR+   +IL+ D V D   +D AVE ++    + 
Sbjct: 58  DRIDELLETYSHEWSLDRMPAVDRALLRIGTWEILFNDEVPDAVAIDEAVELSRSLSTDD 117

Query: 119 H 119
            
Sbjct: 118 S 118


>gi|239917765|ref|YP_002957323.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
 gi|239838972|gb|ACS30769.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
          Length = 150

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R  +  +L    ++  +++  +      +  ++         + +V   +    
Sbjct: 16  TARSRSRQRAVEILFEAEQRGSTVSEGIRTRRESTDLQVN-----AYTQRLVEGVIADQE 70

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           R+D  L       SL R     + +LRV   ++L+  DV D   +  AV  A        
Sbjct: 71  RLDEALSSYSRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALA-AQLSTDD 129

Query: 120 FAKLVNSILRRVSR 133
             + VN +L R+ +
Sbjct: 130 SPEFVNGLLGRLQQ 143


>gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160]
 gi|284064815|gb|ADB75753.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160]
          Length = 135

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      LL      ++  +     +     +V       
Sbjct: 1   MAARSKARKRAVDVLYEADLRGSDPLELLRERVALASPPIPDHAVR-----LVEGVAEHA 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            R+D ++D      S+ R     + +LR++V ++L+  DV D  V+D AVE A+    + 
Sbjct: 56  ARVDELIDRHARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVELARSLSTDD 115

Query: 119 HFA 121
             A
Sbjct: 116 SPA 118


>gi|257457505|ref|ZP_05622673.1| NOL1/NOP2/sun family protein [Treponema vincentii ATCC 35580]
 gi|257445128|gb|EEV20203.1| NOL1/NOP2/sun family protein [Treponema vincentii ATCC 35580]
          Length = 293

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 28/241 (11%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSK------- 273
           +  D ++    Q    ++  S LD+CAAPGGKT   A  +   A++ A ++S+       
Sbjct: 49  YYLDQASIYAAQTLPPIDEGSYLDMCAAPGGKTLVLASGMGQEAQIQANELSRARRARLL 108

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
             L++      R  +            Y     +D +L+DAPCSS   +      L    
Sbjct: 109 TVLDEHLPPDMRARIEVTGYDAATLPRYRQAY-YDRILLDAPCSSERHVITDEKYLACWT 167

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
              I   A  Q  LL      +KPGG +V++ C+L   +++ VVQK+L+       +   
Sbjct: 168 PARIKMLAQRQWALLSAAFLLLKPGGFLVYATCALADAENDGVVQKLLKKYGTEAAVHNG 227

Query: 394 NSAYWKSIDMAMA-------LSPEGWI---RITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            +A   + D   A       ++ E  +   R  PD       +       +   + ++  
Sbjct: 228 AAAAPYAADTETAAGNDTKLIASEKTLFGRRFLPDTCTGAGPL-------YFSLIEKINN 280

Query: 444 P 444
           P
Sbjct: 281 P 281


>gi|85704976|ref|ZP_01036076.1| transcription antitermination factor NusB [Roseovarius sp. 217]
 gi|85670298|gb|EAQ25159.1| transcription antitermination factor NusB [Roseovarius sp. 217]
          Length = 160

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVN 54
           MKS   ARL +   L  +     +   + +          + +       D  L R +++
Sbjct: 15  MKS--AARLYAVQALFQMEHSGQTSDVVREEFLDFRFGAEVDEGVDMAEGDVDLFRKLLD 72

Query: 55  VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             + +  +ID + D  L     + R   +L+ L R + A+++  D     V+   V+ AK
Sbjct: 73  DAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVESDTPPKVVIMEYVDVAK 132

Query: 113 RDKENRHFAKLVNSILRRV 131
                   +K VN++L  +
Sbjct: 133 AFYPAGKESKFVNAVLDHM 151


>gi|312087981|ref|XP_003145683.1| hypothetical protein LOAG_10108 [Loa loa]
 gi|307759152|gb|EFO18386.1| hypothetical protein LOAG_10108 [Loa loa]
          Length = 389

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 50/145 (34%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL------- 393
              Q  +  + +  +   GI+V+S CSL+  ++E V+  +LRSS   +ELV +       
Sbjct: 5   HKLQVNIAQRAMQLLAVDGIMVYSTCSLNPIENEAVIASILRSSAGALELVDVSQQLPQL 64

Query: 394 ----------------------------------NSAYWKSIDMAMALSPEGWIRITPDM 419
                                             +S +  + +       E   R+ P M
Sbjct: 65  KRTSGLSKWRVFDKAMHEYSILEDVVTDQRRYFTSSMFPPNDEEIQKFHLERCFRVLPHM 124

Query: 420 LEKIDGVSSGMDGFFAVALRRLIQP 444
                       GFF   LR+  +P
Sbjct: 125 Q--------NTGGFFVAVLRK-SKP 140


>gi|271499577|ref|YP_003332602.1| NusB antitermination factor [Dickeya dadantii Ech586]
 gi|270343132|gb|ACZ75897.1| NusB antitermination factor [Dickeya dadantii Ech586]
          Length = 139

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R ++        ++DA + 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKGVDIAYFRELLAGVATQAEKLDAQMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR++V ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLNELGQVERAILRLAVYELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +    
Sbjct: 127 LDKAGPY 133


>gi|242242793|ref|ZP_04797238.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis W23144]
 gi|242233929|gb|EES36241.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis W23144]
 gi|319400860|gb|EFV89079.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis FRI909]
          Length = 129

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  +AR+ +   L  +  K   LT    +E+       L   D   +  +V         
Sbjct: 2   SRKDARIQAFQTLFQLEIKETDLTIQEAIEFIKDDHSDL---DFDFIYWLVTGVKDHQIV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   S+ R   S + +LR++  +IL+ D     VV+ AVE  K+  ++ H+ 
Sbjct: 59  LDDTIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVNEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRRVSR 133
             VN +L  ++ 
Sbjct: 119 -FVNGVLSNIND 129


>gi|195470425|ref|XP_002087507.1| GE17352 [Drosophila yakuba]
 gi|194173608|gb|EDW87219.1| GE17352 [Drosophila yakuba]
          Length = 504

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279
           ++ D ++++P           VLD CA+PGGK       +    +   D+ + RL KL  
Sbjct: 274 FMMDGASTLPPLFLQVQPGERVLDACASPGGKSLLMLQTLHLDHLVCNDIQESRLNKLRK 333

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
                     +R         + DA +    + FD +LVD PC++       +  ++   
Sbjct: 334 VMQEYLFDYKERWAGKRLIFSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKP 393

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
               + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L+ 
Sbjct: 394 TRVKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQK 445


>gi|328472533|gb|EGF43396.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
           10329]
          Length = 151

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 15/148 (10%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQI 47
           MK     NAR  +   +      + ++  + +       +     R           D  
Sbjct: 1   MKPAARRNARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDVA 60

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDL 106
             R +++  +     +D+ +   +   +         LLR+++ ++    DV    V++ 
Sbjct: 61  YFRELLSGVVLSHAELDSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 120

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSRE 134
           A+E AK         K VN +L + +  
Sbjct: 121 AIELAK-VFAAEDSHKFVNGVLDKAAPH 147


>gi|304440279|ref|ZP_07400169.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371328|gb|EFM24944.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 135

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR     LL  +          LD  + +S    L + +   +R  ++  +   
Sbjct: 1   MSRRV-ARRGLMKLLYQMDINEDYSDEALDFYFENS---DLKEDEVEFIREHISGMIDKF 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID ++   L   SL R     +Q+LR++V ++ +   A   V++ AVE A+    N  
Sbjct: 57  EEIDEIIKSNLEGWSLERISNIDRQILRIAVYELYFTSTASNIVINEAVEIAREYSSNE- 115

Query: 120 FAKLVNSILRRVSREK 135
             K +N IL  + R+ 
Sbjct: 116 APKFINGILGTIFRKF 131


>gi|317013425|gb|ADU80861.1| transcription antitermination protein NusB [Helicobacter pylori
           Gambia94/24]
          Length = 138

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLERI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|210134202|ref|YP_002300641.1| transcription antitermination protein NusB [Helicobacter pylori
           P12]
 gi|238055353|sp|B6JPA0|NUSB_HELP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|210132170|gb|ACJ07161.1| N utilization substance protein B [Helicobacter pylori P12]
          Length = 138

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLERI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|207092122|ref|ZP_03239909.1| transcription antitermination protein NusB [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|317011858|gb|ADU82466.1| transcription antitermination protein NusB [Helicobacter pylori
           Lithuania75]
          Length = 138

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLERI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|108562426|ref|YP_626742.1| transcription antitermination protein NusB [Helicobacter pylori
           HPAG1]
 gi|208433977|ref|YP_002265643.1| N utilization substance protein B [Helicobacter pylori G27]
 gi|217031745|ref|ZP_03437249.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
 gi|298737115|ref|YP_003729645.1| N utilization substance protein B [Helicobacter pylori B8]
 gi|308182189|ref|YP_003926316.1| transcription antitermination protein NusB [Helicobacter pylori
           PeCan4]
 gi|119390776|sp|Q1CVF4|NUSB_HELPH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055475|sp|B5Z6D7|NUSB_HELPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|107836199|gb|ABF84068.1| N utilization substance protein B [Helicobacter pylori HPAG1]
 gi|208431906|gb|ACI26777.1| N utilization substance protein B [Helicobacter pylori G27]
 gi|216946592|gb|EEC25192.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
 gi|298356309|emb|CBI67181.1| N utilization substance protein B [Helicobacter pylori B8]
 gi|308064374|gb|ADO06266.1| transcription antitermination protein NusB [Helicobacter pylori
           PeCan4]
 gi|317179797|dbj|BAJ57583.1| transcription antitermination protein NusB [Helicobacter pylori
           F32]
          Length = 138

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLERI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|251790668|ref|YP_003005389.1| transcription antitermination protein NusB [Dickeya zeae Ech1591]
 gi|247539289|gb|ACT07910.1| NusB antitermination factor [Dickeya zeae Ech1591]
          Length = 139

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R ++        ++DA + 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKGVDIAYFRELLAGVATQAEKLDAQMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR++V ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVERAILRLAVYELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +    
Sbjct: 127 LDKAGPH 133


>gi|224370206|ref|YP_002604370.1| NusB [Desulfobacterium autotrophicum HRM2]
 gi|259514822|sp|C0QKW6|NUSB_DESAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|223692923|gb|ACN16206.1| NusB [Desulfobacterium autotrophicum HRM2]
          Length = 143

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++   L      + S   LL L   +     + +  +     +V    +  
Sbjct: 1   MGDRRQARELALQALYYFDVDKGSPDELLALFCSNFE-DRIDESIRPFFLDLVKGVTQAR 59

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             +D +++    +  + R     + ++R+++ ++L   D+     ++ AVE  KR    R
Sbjct: 60  AEVDDLMNRSSSNWKVSRMPIVDRNIMRMAIFEMLKQPDIPPTVSINEAVEIGKRF-GTR 118

Query: 119 HFAKLVNSILRR 130
                +N +L +
Sbjct: 119 GSGAFINGVLDK 130


>gi|170760171|ref|YP_001787214.1| transcription antitermination protein NusB [Clostridium botulinum
           A3 str. Loch Maree]
 gi|238688744|sp|B1KT54|NUSB_CLOBM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169407160|gb|ACA55571.1| N utilization substance protein B [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 141

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 12/140 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLE---------YGDSAFRLLSQRDQILVRAIV 53
           +   +R V+  LL        +L   L+             D     L   D   V+ I+
Sbjct: 2   NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEDKEKDYESVDLKDVDIDYVKRII 61

Query: 54  NVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
               +    ID  +   L +  + R       +LR+   ++ +  D+     V+ A+E A
Sbjct: 62  KGIEKNKEEIDGKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPKRVSVNEAIELA 121

Query: 112 KRDKENRHFAKLVNSILRRV 131
           K+    +  A  +N +L ++
Sbjct: 122 KKYSGEKS-ATFINGVLGKM 140


>gi|94311627|ref|YP_584837.1| transcription antitermination protein NusB [Cupriavidus
           metallidurans CH34]
 gi|119390804|sp|Q1LJV8|NUSB_RALME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|93355479|gb|ABF09568.1| transcription termination factor, N utilization substance protein
           B-like protein(Protein nusB) [Cupriavidus metallidurans
           CH34]
          Length = 171

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R ++   L   +  R     +  ++      +  ++ D+    A++   +R   
Sbjct: 32  SARRRSRELALQGLYQWLLNR---NDIGAIQAHLHDAQGFNKADREHFDALLGGAVREEA 88

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           R+ A  +  L  ++       +  L V   ++++ LD+    V++ AVE  K       +
Sbjct: 89  RLTAAFEPFLDRTVDELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGY 148

Query: 121 A 121
            
Sbjct: 149 K 149


>gi|326390202|ref|ZP_08211763.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
 gi|325993850|gb|EGD52281.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
          Length = 140

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR     +L      R+ ++ + +  Y ++         +  +   V   +  L  
Sbjct: 2   NRTEAREWIVKMLYQYDVSRLPISKIFENFYKEND----PGEQKEYIENTVIGAIEHLEE 57

Query: 63  IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           ID  ++    +  L R       +LR S+ ++ Y ++     ++ AVE AK+      
Sbjct: 58  IDKEIERYSQNWALNRMPKIDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYSTEDS 115


>gi|152979861|ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille]
 gi|151279938|gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille]
          Length = 156

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L   +     +  +++     +      + D     A++  T++ + 
Sbjct: 15  TPRHRAREFALQGLYQWLLNNEDV-RVIETHIRQA--HGFDKADAEHFDALLYGTVKQVG 71

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            + A L  ++   +          L +   ++  ++++    V++ AVE  K        
Sbjct: 72  ELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVELTKSFGGIDG- 130

Query: 121 AKLVNSILRRV 131
            K VN +L + 
Sbjct: 131 HKYVNGVLDKF 141


>gi|103487508|ref|YP_617069.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256]
 gi|119390826|sp|Q1GRI6|NUSB_SPHAL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|98977585|gb|ABF53736.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256]
          Length = 149

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
           +S   ARL +   L     +   +  L+   +      ++        D      IV   
Sbjct: 6   QSRSAARLAAVQALYQHEMEATPVAQLIHEFHQHRIGAIIEDAEYADADVPFFDDIVKGV 65

Query: 57  LRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           L     IDA +   L S   + R   +++ +LR    +++   DV   AVV   V+ AK 
Sbjct: 66  LARADEIDAAITARLASGWTMERLDRTMKAILRAGTYELIARGDVPVGAVVSEYVDVAKA 125

Query: 114 DKENRHFAKLVNSILR 129
             + R  A   N +L 
Sbjct: 126 FFDGRE-AGFANGLLD 140


>gi|297735000|emb|CBI17362.3| unnamed protein product [Vitis vinifera]
          Length = 369

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 21/165 (12%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT---------RDTDDI 337
            L   ++ ++       K  +D VLVDA C+  G+IR                  D +  
Sbjct: 216 GLSRTELYKIACDSEVLKCGYDKVLVDAECTHDGSIRHIQKFDHWGWETLERRVLDAERT 275

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q +LL  G   +K GG +V+S CSL    +E+VV++ LR +          +  
Sbjct: 276 DSLTVLQFRLLSNGFRLLKVGGSLVYSTCSLTAAQNEDVVEQFLRENASAELQEIDAATN 335

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           W      +  +    +R  P        ++S   G F     +L 
Sbjct: 336 WPCKSGGIPKT----LRFDP--------LTSQTSGLFVAKFTKLA 368


>gi|30022264|ref|NP_833895.1| transcription antitermination protein NusB [Bacillus cereus ATCC
           14579]
 gi|206971091|ref|ZP_03232042.1| N utilization substance protein B [Bacillus cereus AH1134]
 gi|218233314|ref|YP_002368985.1| transcription antitermination protein NusB [Bacillus cereus B4264]
 gi|218899346|ref|YP_002447757.1| N utilization substance protein B [Bacillus cereus G9842]
 gi|228902700|ref|ZP_04066847.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
 gi|228910018|ref|ZP_04073838.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
 gi|228922937|ref|ZP_04086231.1| N utilization substance protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228967223|ref|ZP_04128259.1| N utilization substance protein B [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974275|ref|ZP_04134844.1| N utilization substance protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|296504671|ref|YP_003666371.1| transcription antitermination protein NusB [Bacillus thuringiensis
           BMB171]
 gi|39931865|sp|Q818R4|NUSB_BACCR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737439|sp|B7IXH3|NUSB_BACC2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737885|sp|B7HB53|NUSB_BACC4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29897821|gb|AAP11096.1| N utilization substance protein B [Bacillus cereus ATCC 14579]
 gi|206733863|gb|EDZ51034.1| N utilization substance protein B [Bacillus cereus AH1134]
 gi|218161271|gb|ACK61263.1| N utilization substance protein B [Bacillus cereus B4264]
 gi|218545985|gb|ACK98379.1| N utilization substance protein B [Bacillus cereus G9842]
 gi|228785325|gb|EEM33335.1| N utilization substance protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792592|gb|EEM40158.1| N utilization substance protein B [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228836708|gb|EEM82055.1| N utilization substance protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228849535|gb|EEM94369.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
 gi|228856887|gb|EEN01400.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
 gi|296325723|gb|ADH08651.1| transcription antitermination protein NusB [Bacillus thuringiensis
           BMB171]
 gi|326941963|gb|AEA17859.1| transcription antitermination protein [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 130

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    AR  +   L  +           ++    +             + ++V   +  
Sbjct: 1   MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVEN 53

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +   L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    +
Sbjct: 54  KEAIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GD 112

Query: 118 RHFAKLVNSILRR 130
               + +N +L  
Sbjct: 113 EESRRFINGVLSN 125


>gi|319762696|ref|YP_004126633.1| transcription antitermination factor nusb [Alicycliphilus
           denitrificans BC]
 gi|317117257|gb|ADU99745.1| transcription antitermination factor NusB [Alicycliphilus
           denitrificans BC]
          Length = 181

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L   +           ++          + D     A+++  +     +DA+
Sbjct: 41  AREFALQALYQHLVGG---NDATAIDLFTRDLSGFHKADAAHYDALLHGCIETEQHMDAL 97

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +  +L   +         ++ + V +  +  DV    V++  +E AK         
Sbjct: 98  IAPLLDRKMAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAKEFGGTDGHK 153


>gi|303258269|ref|ZP_07344276.1| transcription antitermination factor NusB [Burkholderiales
           bacterium 1_1_47]
 gi|302859022|gb|EFL82106.1| transcription antitermination factor NusB [Burkholderiales
           bacterium 1_1_47]
          Length = 188

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 4/130 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +   +        +         F    + DQ   R +++      P ++    
Sbjct: 55  EFALQGVYQWLMSHTDPEAIDAAALEAEDF---DKADQAFYRELLHGVTEEFPSLETSYA 111

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +   +       + +L +   ++         V++ AVE AK    +  F   VN +L
Sbjct: 112 PHIDREVTSLSPIERAILLIGTYELKNTTTPYRVVINEAVELAKSFGGSDGFK-YVNGVL 170

Query: 129 RRVSREKIEL 138
            ++  E    
Sbjct: 171 DKMVPELRPY 180


>gi|19920494|ref|NP_608573.1| CG4749 [Drosophila melanogaster]
 gi|7296118|gb|AAF51412.1| CG4749 [Drosophila melanogaster]
 gi|16185422|gb|AAL13914.1| LD40271p [Drosophila melanogaster]
 gi|220946264|gb|ACL85675.1| CG4749-PA [synthetic construct]
 gi|220955880|gb|ACL90483.1| CG4749-PA [synthetic construct]
          Length = 503

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 101/304 (33%), Gaps = 23/304 (7%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           ++ + +V +       V    +    +   + V     R+   +         +      
Sbjct: 152 ELKFDNVEEDQP--EQVNNPFKQSLTKALEEDVKLDEHRLVDPQFGTGGLYEYMPAHSIK 209

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
             E         +    + A               E  +     +   +     K+    
Sbjct: 210 GMEDWVAESEHYK-YYQTSADFPLAIEPEPSFHYPEHLSLYTYEMGNCSDFKGPKKCMTG 268

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTAL 269
           ++S         ++ D ++++P           VLD CA+PGGK       +    +   
Sbjct: 269 VLSH--------FMMDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDHLVCN 320

Query: 270 DVSKRRLEKL--------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG- 320
           D+ + RL KL            +R       + + DA +    + FD +LVD PC++   
Sbjct: 321 DIQESRLNKLRKVMQEYLFDYKERWAGKRLILSQSDARNLDQYEQFDKILVDVPCTTDRH 380

Query: 321 -TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
               +  ++       + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV  
Sbjct: 381 VLNEQDNNIFKPTRIKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHM 440

Query: 380 VLRS 383
            L+ 
Sbjct: 441 ALQK 444


>gi|126460604|ref|YP_001056882.1| Fmu (Sun) domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126250325|gb|ABO09416.1| Fmu (Sun) domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 415

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 145/444 (32%), Gaps = 57/444 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL-----VRAIVNVTLRFLPRIDA 65
            + +L  V++  ++L           AF+ + +R + L             +R    +  
Sbjct: 13  VAKVLYEVVQNELTLD---------YAFQKVKRRWRALESFKVFYDASFDAVRHYYFLRF 63

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
               +  SS  +       L R     +LY            V + ++    R  AK  +
Sbjct: 64  AASKLFGSSGAKAAAKAWFLYR--ADSLLYNK--------ELVARYRKRLLKRALAKPED 113

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184
                               S  P   +  L      E    +     + +++ +     
Sbjct: 114 VEKALEELRGDPARYLSVKYSYHPAIVETLLRYLPLGEVERLLEAGNTTWMWLRINTFKV 173

Query: 185 ------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238
                  +     ++         + +K+  + I  L          QD ++   V    
Sbjct: 174 DVDKGLKLLEQEAEVEPHPHIPFMVLVKKASKPIQYLSAVKTFAAIPQDLASVYTVLALD 233

Query: 239 TLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                SVLDL AAPG K     Q+     KV A DVS++R+ ++R  L  L  Y    + 
Sbjct: 234 PRPGDSVLDLAAAPGMKISLATQIAEGKLKVVAADVSRKRVARMRHLLKALGAYQYVDVV 293

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                    + FD  L+DAPC+S+G   + P V      +   + +  Q +LL + +   
Sbjct: 294 HADSRKLAARRFDKALLDAPCTSSGAFTKDPGVKIYPRVERARQYSQLQLQLLTRALQLA 353

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           +    VV++ CS+  ++ EEVV K          L  L  +YW  I            R 
Sbjct: 354 E---EVVYAVCSILPEEGEEVVSKAGAR--AEKPLAELAPSYWGDIGG----------RT 398

Query: 416 TPDMLEKIDGVSSGMDGFFAVALR 439
            P +             FF   LR
Sbjct: 399 FPHIHRSEA--------FFISRLR 414


>gi|326429969|gb|EGD75539.1| hypothetical protein PTSG_06609 [Salpingoeca sp. ATCC 50818]
          Length = 448

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 18/152 (11%)

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRR---------HPDVLWTRDTDDIVKSACFQRKLL 348
              +   +L+D V+VDA C+  G+I+                  D   I      QR+LL
Sbjct: 293 CTCHTHSRLYDKVMVDAECTHDGSIKHIIKYNEWGWDTFERRFFDPHRIETLEALQRQLL 352

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
             G S ++PGG +V+S CS  K+ +E ++   L ++P    L+P +              
Sbjct: 353 TTGFSLLRPGGRLVYSTCSFAKRQNESIISWFLDATPT-ARLLPADLPSSTPHTHPREQR 411

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +  I+  P          SG  G F   + +
Sbjct: 412 LKHCIKFNP--------KVSGTSGLFVAVITK 435


>gi|308806802|ref|XP_003080712.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri]
 gi|116059173|emb|CAL54880.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri]
          Length = 682

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 96/311 (30%), Gaps = 88/311 (28%)

Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALD 270
            EG+   Q+  + +PV      +   VLD+CA+PG KT Q           +   V A D
Sbjct: 127 KEGLGARQEIVSMLPVMALDPPSGARVLDVCASPGQKTMQLLERVRYGASGTRGVVHAND 186

Query: 271 VSKRRLE--------KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD-------------- 308
               R++          R   +R  L+A      D       +  D              
Sbjct: 187 AHPGRVKTLLQAIDRHCRIAREREGLFASRAFGQDLHFPLFAESGDLKRERRRITALSDG 246

Query: 309 --------------AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                          VL D PCS  GTIR+  D L              Q  +  +    
Sbjct: 247 CERMDALLELGGYTHVLADVPCSGDGTIRKDADCLVRWHPGIGNMLHQTQLAIARRCARL 306

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVL----------RSSPIPVELVPLNSAYWKSIDMA 404
           +KPGG++V+S C+ +  + E VV  +L              +PVE  P   A+     + 
Sbjct: 307 LKPGGVMVYSTCTFNPVEDEAVVASLLLDDELSLELQELDGLPVEGRPGLYAWRVGEHVN 366

Query: 405 MALSPEGWIRI---------------------TP-----------DMLEKIDGVSS--GM 430
            +   +G + I                      P           +  E+          
Sbjct: 367 ASGDDDGDVSIKWFETFDEANVNGSGDFMTTMWPPGPKFARELRLERCERFFPQDGAKNT 426

Query: 431 DGFFAVALRRL 441
            GFF   +R+ 
Sbjct: 427 GGFFVAKIRKK 437


>gi|195575701|ref|XP_002077715.1| GD23073 [Drosophila simulans]
 gi|194189724|gb|EDX03300.1| GD23073 [Drosophila simulans]
          Length = 361

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 12/172 (6%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279
           ++ D ++++P           VLD CA+PGGK       +    +   D+ + RL KL  
Sbjct: 131 FMMDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDHLVCNDIQESRLNKLRK 190

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
                     +R           DA +    + FD +LVD PC++       +  ++   
Sbjct: 191 VMQEYLFDYKERWAGKRLIFSHSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKP 250

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
               + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L+ 
Sbjct: 251 TRVKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQK 302


>gi|90961508|ref|YP_535424.1| transcription antitermination protein NusB [Lactobacillus
           salivarius UCC118]
 gi|227890595|ref|ZP_04008400.1| transcription antitermination protein NusB [Lactobacillus
           salivarius ATCC 11741]
 gi|119390778|sp|Q1WUJ4|NUSB_LACS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|90820702|gb|ABD99341.1| N utilization substance protein B [Lactobacillus salivarius UCC118]
 gi|227867533|gb|EEJ74954.1| transcription antitermination protein NusB [Lactobacillus
           salivarius ATCC 11741]
          Length = 131

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  S  + R ++   L  +     +     +  Y +      +  D   +  +V+  L  
Sbjct: 1   MSLSRHDIRKIAFQTLFAL---GSNPDANSEDIYQELLDEDNNDSDLSYLNELVDGVLDH 57

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
              ID  +   L  +  + R   +   +LR+++ +I Y DVA    V+ AVE AK   ++
Sbjct: 58  QSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYSDVASKIAVNEAVELAKEFSDD 117

Query: 118 RHFAKLVNSILRR 130
           + +   VN+IL+ 
Sbjct: 118 KSYK-FVNAILQN 129


>gi|42783301|ref|NP_980548.1| transcription antitermination protein NusB [Bacillus cereus ATCC
           10987]
 gi|81568850|sp|Q731B1|NUSB_BACC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|42739229|gb|AAS43156.1| N utilization substance protein B [Bacillus cereus ATCC 10987]
          Length = 130

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +          L+ +          +     + ++V   +   
Sbjct: 1   MKRRT-ARERAMQALYQMDITGE-----LEPKIAVENTLDEGEETNEFLESLVVGFVENK 54

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  +   L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    + 
Sbjct: 55  EVIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GDE 113

Query: 119 HFAKLVNSILRR 130
              + +N +L  
Sbjct: 114 ESRRFINGVLSN 125


>gi|304391939|ref|ZP_07373881.1| transcription antitermination factor NusB [Ahrensia sp. R2A130]
 gi|303296168|gb|EFL90526.1| transcription antitermination factor NusB [Ahrensia sp. R2A130]
          Length = 186

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 1   MKSGMN---ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAI 52
           MK       ARL +   L  +      LT ++           +        D    R I
Sbjct: 8   MKPANKRGSARLSAVQALYQMDIGGAGLTEVVAEYENFRLGHEIDGETYLDADPSWFRGI 67

Query: 53  VNVTLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVE 109
           V   +R   +ID V+   L     L R   +L+ +LR +V +++   DV+   VV   +E
Sbjct: 68  VGGVVRDQKKIDPVIHDALTKDWPLSRIDSTLRAVLRAAVFELINRPDVSARVVVSEYIE 127

Query: 110 QAKRDKENRHFAKLVNSILRR 130
             K         K+VN +L +
Sbjct: 128 VTKAFF-ESDEPKMVNGVLDK 147


>gi|207341631|gb|EDZ69632.1| YNL022Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 490

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 103/351 (29%), Gaps = 75/351 (21%)

Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209
            W +      +       +         + +      + W+  +   +     I      
Sbjct: 154 RWIRINPLKCHPNGETEPVLAELRKKFTLKV------DKWSELVPGSIYYDEFIPNLFGI 207

Query: 210 ES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------- 259
                I +   +  G   +QD ++  P  +     +  V+D C+APG KT          
Sbjct: 208 HPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPE 267

Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFD---AVLVD 313
               +  ++ A +    R + L+  +          +   D       + +      +VD
Sbjct: 268 PPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEKYKDVTCFIVD 327

Query: 314 APCSSTGTIRRHPDVLWTRD-------------------------TDDIVKSACFQRKLL 348
             CS +G   R     + R                             + K + FQ +++
Sbjct: 328 PSCSGSGIFGRKFFDSFNRRKIDDKDDDGGIVPDEQEEFIAKEELQTRLAKLSSFQFQMV 387

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-------------------SSPIPVE 389
              +SF      +V+S CS+  +++E VV  +L                    S P   +
Sbjct: 388 KHAMSFPAAK-KIVYSTCSIHAEENERVVIDLLLDKSVREWGWKVAPKRKVIPSWPRRGK 446

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +      +   +        EG IR  P         S G  GFFAV   R
Sbjct: 447 VEEFEEVFRDGVTYDPQQLAEGCIRALP--------KSDGGIGFFAVCFER 489


>gi|254502610|ref|ZP_05114761.1| transcription antitermination factor NusB [Labrenzia alexandrii
           DFL-11]
 gi|222438681|gb|EEE45360.1| transcription antitermination factor NusB [Labrenzia alexandrii
           DFL-11]
          Length = 177

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      LT ++         + +        D+   + I+   +    
Sbjct: 28  ARLAAVQALYQMDIGGAPLTNVVSEYTAFRLGKEIDGEQYRDADEQWFKHILAGVVADQK 87

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
            +D  +   L     L R    L+ +LR    ++L   DV    ++   ++ AK   E+ 
Sbjct: 88  FLDPYIHTALKEDWPLKRIDSLLRAILRAGGYELLRRRDVPAKVIISEYIDVAKAFFEDD 147

Query: 119 HFAKLVNSILRRVSR 133
               LVN +L R++ 
Sbjct: 148 E-PGLVNGVLDRLAH 161


>gi|253699860|ref|YP_003021049.1| NusB antitermination factor [Geobacter sp. M21]
 gi|259514841|sp|C6E3M6|NUSB_GEOSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|251774710|gb|ACT17291.1| NusB antitermination factor [Geobacter sp. M21]
          Length = 145

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 1   MKSGMNARLVSSHLLSC---VMRKRISLTCLLDLEYGDSAFRLLS--QRDQILVRAIVNV 55
           M +    R ++   L     V++   S    +   + +     LS   +       +VN 
Sbjct: 1   MTTRREGRELALQALYSKDLVLQDANSTLKRITESFSEGEEPTLSVNSKAYAFASELVNG 60

Query: 56  TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
            +  L +ID+ +       S+ R       +LR++V ++LY  D+     ++ A+E AK+
Sbjct: 61  VVSNLQQIDSRIAEKSKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVAKK 120

Query: 114 DKENRHFA 121
              +   +
Sbjct: 121 FGADDSAS 128


>gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Nakamurella multipartita DSM 44233]
 gi|258557628|gb|ACV80570.1| NusB antitermination factor [Nakamurella multipartita DSM 44233]
          Length = 144

 Score = 83.4 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIV 53
           M +   +R  +  +L     + +    +L     +      +  D+            +V
Sbjct: 1   MSARSKSRKRALDVLFAAEARGVDPLVVLSERMEEP-----TGPDRHSWTPIGDYAEGLV 55

Query: 54  NVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
              +    R+D +L       ++ R     + +LR++V ++LY  +V    VV+ AV+ A
Sbjct: 56  RGFVEHQDRVDTLLAEHSRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAVDSA 115

Query: 112 KRDKENRHFAKLVNSILRR 130
           K         + VN +L +
Sbjct: 116 K-ILSTDDSPRFVNGVLGQ 133


>gi|22124909|ref|NP_668332.1| transcription antitermination protein NusB [Yersinia pestis KIM 10]
 gi|45440599|ref|NP_992138.1| transcription antitermination protein NusB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51595286|ref|YP_069477.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808666|ref|YP_652582.1| transcription antitermination protein NusB [Yersinia pestis
           Antiqua]
 gi|108811072|ref|YP_646839.1| transcription antitermination protein NusB [Yersinia pestis
           Nepal516]
 gi|145600075|ref|YP_001164151.1| transcription antitermination protein NusB [Yersinia pestis
           Pestoides F]
 gi|149364973|ref|ZP_01887008.1| N utilization substance protein B [Yersinia pestis CA88-4125]
 gi|153950126|ref|YP_001402075.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421924|ref|YP_001607525.1| transcription antitermination protein NusB [Yersinia pestis Angola]
 gi|165926545|ref|ZP_02222377.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935993|ref|ZP_02224563.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011125|ref|ZP_02232023.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212965|ref|ZP_02239000.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398502|ref|ZP_02304026.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421645|ref|ZP_02313398.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423478|ref|ZP_02315231.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025473|ref|YP_001721978.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis YPIII]
 gi|186894303|ref|YP_001871415.1| transcription antitermination protein NusB [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930211|ref|YP_002348086.1| transcription antitermination protein NusB [Yersinia pestis CO92]
 gi|229838786|ref|ZP_04458945.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896060|ref|ZP_04511230.1| transcription antitermination protein [Yersinia pestis Pestoides A]
 gi|229899354|ref|ZP_04514497.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901299|ref|ZP_04516421.1| transcription antitermination protein [Yersinia pestis Nepal516]
 gi|270489488|ref|ZP_06206562.1| transcription antitermination factor NusB [Yersinia pestis KIM D27]
 gi|294504909|ref|YP_003568971.1| transcription antitermination protein NusB [Yersinia pestis
           Z176003]
 gi|22095956|sp|Q8ZC42|NUSB_YERPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81640219|sp|Q66DV7|NUSB_YERPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390849|sp|Q1C4I5|NUSB_YERPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390850|sp|Q1CL91|NUSB_YERPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215730|sp|A4TPG6|NUSB_YERPP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918813|sp|A7FLE7|NUSB_YERP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687286|sp|A9R2J9|NUSB_YERPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688409|sp|B1JIE1|NUSB_YERPY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691415|sp|B2K6T4|NUSB_YERPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21957745|gb|AAM84583.1|AE013703_13 transcription termination; L factor [Yersinia pestis KIM 10]
 gi|45435456|gb|AAS61015.1| N utilization substance protein B [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51588568|emb|CAH20176.1| transcription termination; L factor [Yersinia pseudotuberculosis IP
           32953]
 gi|108774720|gb|ABG17239.1| N utilization substance protein B [Yersinia pestis Nepal516]
 gi|108780579|gb|ABG14637.1| N utilization substance protein B [Yersinia pestis Antiqua]
 gi|115348822|emb|CAL21776.1| N utilization substance protein B [Yersinia pestis CO92]
 gi|145211771|gb|ABP41178.1| N utilization substance protein B [Yersinia pestis Pestoides F]
 gi|149291386|gb|EDM41460.1| N utilization substance protein B [Yersinia pestis CA88-4125]
 gi|152961621|gb|ABS49082.1| transcription antitermination factor NusB [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354739|gb|ABX88687.1| transcription antitermination factor NusB [Yersinia pestis Angola]
 gi|165916138|gb|EDR34745.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921473|gb|EDR38670.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990125|gb|EDR42426.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205752|gb|EDR50232.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960564|gb|EDR56585.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051006|gb|EDR62414.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057648|gb|EDR67394.1| transcription antitermination factor NusB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752007|gb|ACA69525.1| NusB antitermination factor [Yersinia pseudotuberculosis YPIII]
 gi|186697329|gb|ACC87958.1| NusB antitermination factor [Yersinia pseudotuberculosis PB1/+]
 gi|229681228|gb|EEO77322.1| transcription antitermination protein [Yersinia pestis Nepal516]
 gi|229687756|gb|EEO79829.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695152|gb|EEO85199.1| transcription antitermination protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700983|gb|EEO89012.1| transcription antitermination protein [Yersinia pestis Pestoides A]
 gi|262362975|gb|ACY59696.1| transcription antitermination protein NusB [Yersinia pestis
           D106004]
 gi|262366895|gb|ACY63452.1| transcription antitermination protein NusB [Yersinia pestis
           D182038]
 gi|270337992|gb|EFA48769.1| transcription antitermination factor NusB [Yersinia pestis KIM D27]
 gi|294355368|gb|ADE65709.1| transcription antitermination protein NusB [Yersinia pestis
           Z176003]
 gi|320016368|gb|ADV99939.1| transcription antitermination protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 138

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R +++        +DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|313681443|ref|YP_004059181.1| nusb antitermination factor [Sulfuricurvum kujiense DSM 16994]
 gi|313154303|gb|ADR32981.1| NusB antitermination factor [Sulfuricurvum kujiense DSM 16994]
          Length = 132

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR+    LL        ++    D    +   R    + +     +       L
Sbjct: 1   MATRHQARMAVVSLLYAYDLGNQTIADFSDEILEEKKIRN---KQRDFALDLFKGVTEHL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID  +   L      R     +  LR+   +I++ ++    +++ A+E AK    +  
Sbjct: 58  SEIDEAIVKHLKDWDFDRLGSIERATLRLGGYEIMFGELDSAVIINEAIEVAKAF-GSEQ 116

Query: 120 FAKLVNSILR 129
             K +N +L 
Sbjct: 117 SPKFINGVLD 126


>gi|309810676|ref|ZP_07704484.1| transcription antitermination factor NusB [Dermacoccus sp.
           Ellin185]
 gi|308435307|gb|EFP59131.1| transcription antitermination factor NusB [Dermacoccus sp.
           Ellin185]
          Length = 138

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M +   AR  +  LL    ++ I+   LLD           L +        +V   +  
Sbjct: 1   MGARTKARKRALDLLFEAEQREINAKDLLDERVLAPVTPAPLPE----YTAVLVRGVVDH 56

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
              I+  L+      +L R     + LLRV+  ++LY  DV D   V  A   A
Sbjct: 57  WRTINEALETYARGWTLDRMPAVDRALLRVAAYEVLYVDDVPDGVAVSEAKNLA 110


>gi|322420503|ref|YP_004199726.1| NusB antitermination factor [Geobacter sp. M18]
 gi|320126890|gb|ADW14450.1| NusB antitermination factor [Geobacter sp. M18]
          Length = 145

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNV 55
           M +    R ++   L             L   +      +      + +       +VN 
Sbjct: 1   MTTRREGRELALQALYSKDLVLQDANTTLKRIFESFGEGEDPTLSANSKAYAFASELVNG 60

Query: 56  TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
            +  L  ID  +       S+ R       +LR++V ++LY  D+     ++ A+E AK+
Sbjct: 61  VVTHLQEIDGRIAEKSKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVAKK 120

Query: 114 DKENRHFA 121
              +   +
Sbjct: 121 FGADDSAS 128


>gi|260575720|ref|ZP_05843717.1| NusB antitermination factor [Rhodobacter sp. SW2]
 gi|259022118|gb|EEW25417.1| NusB antitermination factor [Rhodobacter sp. SW2]
          Length = 157

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   ARL +   L  +     ++  +                 +++ D +  RA+V  
Sbjct: 13  MKS--AARLYAVQALFQMEVSGQTVEAVQREFETHRFGAVYDGDEMAEGDVVHFRALVGH 70

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +  +ID + D  L     + R    L+ L R + A++L +      V+   V+ AK 
Sbjct: 71  AVNWQAKIDQLTDRALVAKWPISRIDPVLRALFRAAGAEMLEMPTPPKVVITEFVDVAKA 130

Query: 114 DKENRHFAKLVNSILRRV 131
                  A  VN++L  +
Sbjct: 131 FFPEGKEASFVNAVLDHM 148


>gi|121534502|ref|ZP_01666325.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
 gi|121306995|gb|EAX47914.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
          Length = 141

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR ++   L  +          L     D     +S+  Q   R +V  T   L  
Sbjct: 2   SRRKAREIALQTLFQLDFNDTDPVAALAALVQDR--DDVSKNAQEYARQLVTGTKDHLAE 59

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKENRH 119
           IDA++        L R     + ++R+++ ++ Y    +    V++ AVE AK       
Sbjct: 60  IDAIIAGQAKEWKLERMAGVDRNIVRMAIYEMRYGQEKLPPNVVINEAVELAKIFSTEES 119


>gi|220912760|ref|YP_002488069.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6]
 gi|254772610|sp|B8H8V2|NUSB_ARTCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219859638|gb|ACL39980.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6]
          Length = 136

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++  S   +L     +   ++++         IV   +   
Sbjct: 1   MSARGKARSRALDVLFEAEQRSASAFDVL-RARREKTDQIVNP----YTLEIVEGVVSRQ 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID  L+      SL R     + +LR+   ++LY  DV D   V  AV  AK      
Sbjct: 56  QAIDEFLETYSQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKT-LSTD 114

Query: 119 HFAKLVNSILRRVSR 133
              + +N +L R+ +
Sbjct: 115 ESPQFINGLLGRLQQ 129


>gi|330824837|ref|YP_004388140.1| NusB antitermination factor [Alicycliphilus denitrificans K601]
 gi|329310209|gb|AEB84624.1| NusB antitermination factor [Alicycliphilus denitrificans K601]
          Length = 181

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L   +           ++          + D     A+++  +     +DA+
Sbjct: 41  AREFALQALYQHLVGG---NDATAIDLFTRDLSGFHKADAAHYDALLHGCIETAQHMDAL 97

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +  +L   +         ++ + V +  +  DV    V++  +E AK         
Sbjct: 98  IAPLLDRKMAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAKEFGGTDGHK 153


>gi|326386550|ref|ZP_08208172.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208865|gb|EGD59660.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 148

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
           K+   ARL +   L  +  ++  LT LLD  +     R +        D      +V   
Sbjct: 7   KARSAARLAAVQALYQLEMEQPELTTLLDEFHRHRLGREIEDVEYLDADVAFFDDVVKGV 66

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +     IDA L   L    SL R   ++ Q+LR    ++L   D+    V+D  ++ A  
Sbjct: 67  VARRDEIDAKLTERLAQGWSLSRLDKTMLQILRAGTYELLARSDIGVGTVIDEYLDVAHA 126

Query: 114 DKENRHFA 121
             + R   
Sbjct: 127 FFDAREAK 134


>gi|289675585|ref|ZP_06496475.1| transcription antitermination protein NusB [Pseudomonas syringae
           pv. syringae FF5]
          Length = 127

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR +++  L        SL  +      D+ F  +   D      +++       
Sbjct: 25  AKRREARQMATQALYQWHMAGHSLNEIEAQFRVDNDFSNV---DGTYFHELLHGVATNKT 81

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDL 106
            ID  L   L  ++         +LR+S  ++L  +DV    V++ 
Sbjct: 82  EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINE 127


>gi|302879544|ref|YP_003848108.1| NusB antitermination factor [Gallionella capsiferriformans ES-2]
 gi|302582333|gb|ADL56344.1| NusB antitermination factor [Gallionella capsiferriformans ES-2]
          Length = 157

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR ++   +          T +     G+   + L + D+ +   ++   L    
Sbjct: 17  SPRHRARELALQGVYQWRVSGSDATEIEAHLQGE---KNLGRYDKPMYSKLLRGVLANQE 73

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +  +L   L  +L         +L ++  ++ + LDV    V++ AVE AK        
Sbjct: 74  ELQILLTPYLDRALDELSTVEFSVLLLAGFELAHQLDVPYKVVINEAVELAKTFGGTDG- 132

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 133 HKYVNGVLDK 142


>gi|30264257|ref|NP_846634.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Ames]
 gi|47529700|ref|YP_021049.1| transcription antitermination protein NusB [Bacillus anthracis str.
           'Ames Ancestor']
 gi|47569441|ref|ZP_00240122.1| transcription antitermination factor nusB [Bacillus cereus G9241]
 gi|49187084|ref|YP_030336.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Sterne]
 gi|49478572|ref|YP_038243.1| transcription antitermination protein NusB [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141314|ref|YP_085515.1| transcription antitermination protein NusB [Bacillus cereus E33L]
 gi|65321567|ref|ZP_00394526.1| COG0781: Transcription termination factor [Bacillus anthracis str.
           A2012]
 gi|118479373|ref|YP_896524.1| transcription antitermination protein NusB [Bacillus thuringiensis
           str. Al Hakam]
 gi|165873007|ref|ZP_02217629.1| N utilization substance protein B [Bacillus anthracis str. A0488]
 gi|167634649|ref|ZP_02392969.1| N utilization substance protein B [Bacillus anthracis str. A0442]
 gi|167638629|ref|ZP_02396905.1| N utilization substance protein B [Bacillus anthracis str. A0193]
 gi|170687525|ref|ZP_02878742.1| N utilization substance protein B [Bacillus anthracis str. A0465]
 gi|170709044|ref|ZP_02899474.1| N utilization substance protein B [Bacillus anthracis str. A0389]
 gi|177654829|ref|ZP_02936586.1| N utilization substance protein B [Bacillus anthracis str. A0174]
 gi|190565849|ref|ZP_03018768.1| N utilization substance protein B [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034887|ref|ZP_03102294.1| N utilization substance protein B [Bacillus cereus W]
 gi|196041593|ref|ZP_03108885.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
 gi|196046394|ref|ZP_03113620.1| N utilization substance protein B [Bacillus cereus 03BB108]
 gi|206976312|ref|ZP_03237220.1| N utilization substance protein B [Bacillus cereus H3081.97]
 gi|217961672|ref|YP_002340242.1| transcription antitermination protein NusB [Bacillus cereus AH187]
 gi|218905318|ref|YP_002453152.1| N utilization substance protein B [Bacillus cereus AH820]
 gi|222097628|ref|YP_002531685.1| transcription antitermination protein nusb [Bacillus cereus Q1]
 gi|225866164|ref|YP_002751542.1| N utilization substance protein B [Bacillus cereus 03BB102]
 gi|227816958|ref|YP_002816967.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
 gi|228916818|ref|ZP_04080383.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929228|ref|ZP_04092255.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935505|ref|ZP_04098323.1| N utilization substance protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947899|ref|ZP_04110186.1| N utilization substance protein B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229031831|ref|ZP_04187819.1| N utilization substance protein B [Bacillus cereus AH1271]
 gi|229123702|ref|ZP_04252897.1| N utilization substance protein B [Bacillus cereus 95/8201]
 gi|229604290|ref|YP_002868476.1| N utilization substance protein B [Bacillus anthracis str. A0248]
 gi|254683946|ref|ZP_05147806.1| transcription antitermination protein NusB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721781|ref|ZP_05183570.1| transcription antitermination protein NusB [Bacillus anthracis str.
           A1055]
 gi|254736294|ref|ZP_05194000.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741332|ref|ZP_05199019.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Kruger B]
 gi|254754034|ref|ZP_05206069.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Vollum]
 gi|254757905|ref|ZP_05209932.1| transcription antitermination protein NusB [Bacillus anthracis str.
           Australia 94]
 gi|301055675|ref|YP_003793886.1| transcription antitermination protein NusB [Bacillus anthracis CI]
 gi|39931872|sp|Q81M49|NUSB_BACAN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81613591|sp|Q6HDY3|NUSB_BACHK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81686283|sp|Q635A2|NUSB_BACCZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215664|sp|A0RIH4|NUSB_BACAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737438|sp|B7JM33|NUSB_BACC0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738895|sp|B7HNU5|NUSB_BACC7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772611|sp|C3P7W1|NUSB_BACAA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772612|sp|C3LJV6|NUSB_BACAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772613|sp|C1ERQ5|NUSB_BACC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772614|sp|B9IXH5|NUSB_BACCQ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|30258902|gb|AAP28120.1| N utilization substance protein B [Bacillus anthracis str. Ames]
 gi|47504848|gb|AAT33524.1| N utilization substance protein B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47553856|gb|EAL12226.1| transcription antitermination factor nusB [Bacillus cereus G9241]
 gi|49181011|gb|AAT56387.1| N utilization substance protein B [Bacillus anthracis str. Sterne]
 gi|49330128|gb|AAT60774.1| N utilization substance protein B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974783|gb|AAU16333.1| N utilization substance protein B [Bacillus cereus E33L]
 gi|118418598|gb|ABK87017.1| N utilization substance protein B [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711290|gb|EDR16845.1| N utilization substance protein B [Bacillus anthracis str. A0488]
 gi|167513477|gb|EDR88847.1| N utilization substance protein B [Bacillus anthracis str. A0193]
 gi|167530101|gb|EDR92836.1| N utilization substance protein B [Bacillus anthracis str. A0442]
 gi|170126071|gb|EDS94968.1| N utilization substance protein B [Bacillus anthracis str. A0389]
 gi|170668720|gb|EDT19466.1| N utilization substance protein B [Bacillus anthracis str. A0465]
 gi|172080490|gb|EDT65576.1| N utilization substance protein B [Bacillus anthracis str. A0174]
 gi|190562768|gb|EDV16734.1| N utilization substance protein B [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992426|gb|EDX56387.1| N utilization substance protein B [Bacillus cereus W]
 gi|196022864|gb|EDX61545.1| N utilization substance protein B [Bacillus cereus 03BB108]
 gi|196027581|gb|EDX66196.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
 gi|206745508|gb|EDZ56907.1| N utilization substance protein B [Bacillus cereus H3081.97]
 gi|217067907|gb|ACJ82157.1| N utilization substance protein B [Bacillus cereus AH187]
 gi|218539371|gb|ACK91769.1| N utilization substance protein B [Bacillus cereus AH820]
 gi|221241686|gb|ACM14396.1| N utilization substance protein B [Bacillus cereus Q1]
 gi|225785990|gb|ACO26207.1| N utilization substance protein B [Bacillus cereus 03BB102]
 gi|227003150|gb|ACP12893.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
 gi|228659837|gb|EEL15482.1| N utilization substance protein B [Bacillus cereus 95/8201]
 gi|228729449|gb|EEL80438.1| N utilization substance protein B [Bacillus cereus AH1271]
 gi|228811886|gb|EEM58220.1| N utilization substance protein B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824257|gb|EEM70071.1| N utilization substance protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830518|gb|EEM76128.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843005|gb|EEM88088.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268698|gb|ACQ50335.1| N utilization substance protein B [Bacillus anthracis str. A0248]
 gi|300377844|gb|ADK06748.1| transcription antitermination protein NusB [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328096|gb|ADY23356.1| transcription antitermination protein NusB [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 130

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    AR  +   L  +           ++    +             + ++V   +  
Sbjct: 1   MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVEN 53

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +   L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    +
Sbjct: 54  KEVIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GD 112

Query: 118 RHFAKLVNSILRR 130
               + +N +L  
Sbjct: 113 EESRRFINGVLSN 125


>gi|291532856|emb|CBL05969.1| transcription antitermination factor NusB [Megamonas hypermegale
           ART12/1]
          Length = 131

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR ++   L  +      +   ++          L + D   VR +V+ T   L  
Sbjct: 2   SRRQAREIALQSLFQLDFNECEVDSAIENVLSHKK---LHEADCDFVRILVSGTRENLES 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKENRH 119
           ID ++        + R     + ++R+++ ++ +    +     ++ AVE AK+      
Sbjct: 59  IDKMIAEKSKDWKIERMSGIDRNIVRLAIFEMKFSSDKLVPNIAINEAVELAKKF-GTDD 117

Query: 120 FAKLVNSILRRV 131
            A+ VN IL  +
Sbjct: 118 SARFVNGILGSM 129


>gi|163852577|ref|YP_001640620.1| transcription antitermination factor NusB [Methylobacterium
           extorquens PA1]
 gi|218531417|ref|YP_002422233.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4]
 gi|240139911|ref|YP_002964388.1| transcription antitermination factor [Methylobacterium extorquens
           AM1]
 gi|254562335|ref|YP_003069430.1| transcription antitermination factor [Methylobacterium extorquens
           DM4]
 gi|163664182|gb|ABY31549.1| transcription antitermination factor NusB [Methylobacterium
           extorquens PA1]
 gi|218523720|gb|ACK84305.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4]
 gi|240009885|gb|ACS41111.1| transcription antitermination factor [Methylobacterium extorquens
           AM1]
 gi|254269613|emb|CAX25584.1| transcription antitermination factor [Methylobacterium extorquens
           DM4]
          Length = 171

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL     L  +      +   L         + +        +    R ++   +    
Sbjct: 19  ARLAVVQALYEMEISDKGVIEALAEFEAFWIGQEVDGVVHPPAEIAFFRDVLRGAVEEQR 78

Query: 62  RIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            ID  LD  L     L R +  L+ +LR    ++++  DV   A +   VE A       
Sbjct: 79  AIDPKLDTALAKGWPLRRLEAVLRAILRAGAYELMFRRDVPARAAISQYVEVAYSFYGGD 138

Query: 119 HFAKLVNSILRR 130
               +VN++L R
Sbjct: 139 E-PGMVNAVLDR 149


>gi|254469407|ref|ZP_05082812.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062]
 gi|211961242|gb|EEA96437.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062]
          Length = 163

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   +  +      L  +L+        + +        D    R +V        
Sbjct: 21  ARLAAVQAVYQMEITGARLNDVLNEYEAYRLGQEVDGEQYRDADPAWFRDLVQAVFEDQL 80

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENR 118
           RID  +   L     L R   +L+ +LRV  A+ +   DV    +++  ++ AK   E  
Sbjct: 81  RIDPRIHTALSEDWPLKRIDTTLRAILRVGCAEFLRKKDVPARVIINEYIDVAKSFYEGD 140

Query: 119 HFAKLVNSILRR 130
             A+LVN I+ R
Sbjct: 141 E-ARLVNGIMNR 151


>gi|229093241|ref|ZP_04224359.1| N utilization substance protein B [Bacillus cereus Rock3-42]
 gi|228690215|gb|EEL44009.1| N utilization substance protein B [Bacillus cereus Rock3-42]
          Length = 130

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    AR  +   L  +           ++    +             + ++V   +  
Sbjct: 1   MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVIGFVEN 53

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +   L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    +
Sbjct: 54  KEVIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GD 112

Query: 118 RHFAKLVNSILRR 130
               + +N +L  
Sbjct: 113 EESRRFINGVLSN 125


>gi|330685971|gb|EGG97594.1| transcription antitermination factor NusB [Staphylococcus
           epidermidis VCU121]
          Length = 128

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +    +  L   D   +  +V       P 
Sbjct: 2   SRKESRVQAFQTLFQLEIKDTDLTIKEAINFIKDDYPDL---DFDFINWLVTGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   SL R   + + +LR++  +IL+ D     V++ AVE AK+  ++ H+ 
Sbjct: 59  LDEKIKPYLKDWSLERLLKTDRIILRMATFEILHSDTPAKVVINEAVELAKQFSDDDHYK 118

Query: 122 KLVNSILRRVS 132
             +N +L  ++
Sbjct: 119 -FINGVLSNIN 128


>gi|187251633|ref|YP_001876115.1| NusB antitermination factor [Elusimicrobium minutum Pei191]
 gi|254772640|sp|B2KE32|NUSB_ELUMP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|186971793|gb|ACC98778.1| NusB anti-termination factor [Elusimicrobium minutum Pei191]
          Length = 140

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +   L      +     +   EY +     L          I++  L   
Sbjct: 1   MGNRRLAREHALQTLYYADTGKTQGKDI--NEYKEDFKDSLDAAGFEFCSGIIDGALEHQ 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKEN 117
             +D ++     + SL R     + +LR++  ++L+   +    AV+D A+E AK+    
Sbjct: 59  AELDKIISAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIELAKKF-ST 117

Query: 118 RHFAKLVNSILRR 130
            + ++ +N +L +
Sbjct: 118 ENSSRFINGLLDQ 130


>gi|86151316|ref|ZP_01069531.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86153756|ref|ZP_01071959.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|121612229|ref|YP_001000093.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157414677|ref|YP_001481933.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|283955805|ref|ZP_06373296.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|315123942|ref|YP_004065946.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|166215678|sp|A1VYA2|NUSB_CAMJJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|172047054|sp|A8FKG9|NUSB_CAMJ8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85841663|gb|EAQ58910.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842717|gb|EAQ59929.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87250180|gb|EAQ73138.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157385641|gb|ABV51956.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|283792760|gb|EFC31538.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|307747317|gb|ADN90587.1| N utilization substance protein B-like protein [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017664|gb|ADT65757.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315932685|gb|EFV11615.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 132

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 12/133 (9%)

Query: 1   MKSGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M +    R     LL       +  + +  +LD +   +  +            + +  L
Sbjct: 1   MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN-------FTLNLYHGIL 53

Query: 58  RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
             L  ID  L+  L  + +    +  + +LR+   ++L+ D     V++ A+E AK    
Sbjct: 54  DNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVINEAIELAKE-LA 112

Query: 117 NRHFAKLVNSILR 129
           N +  K +N +L 
Sbjct: 113 NDNSPKFINGVLD 125


>gi|317176809|dbj|BAJ54598.1| transcription antitermination protein NusB [Helicobacter pylori
           F16]
          Length = 138

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  L
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGTYEIGFTPTQNPIIINECIELGK 110


>gi|237654565|ref|YP_002890879.1| transcription antitermination protein NusB [Thauera sp. MZ1T]
 gi|237625812|gb|ACR02502.1| NusB antitermination factor [Thauera sp. MZ1T]
          Length = 166

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR ++   +   +    + T +    + +S    L + D+ L  +++       
Sbjct: 22  MARRR-ARELALQGVYQWLLSGNNATTV--QRHLESETENLDKIDRELFVSLLRGATGAA 78

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
             +    + +L   +         +L +   ++ + LD     V++ A+E AK       
Sbjct: 79  DELRGCFEPLLSRPVAELSPIEHAILLLGTHELRHNLDTPYRVVINEAIELAKGYGGTDG 138

Query: 120 FAKLVNSILRR 130
             K VN +L +
Sbjct: 139 -HKFVNGVLDK 148


>gi|322834070|ref|YP_004214097.1| NusB antitermination factor [Rahnella sp. Y9602]
 gi|321169271|gb|ADW74970.1| NusB antitermination factor [Rahnella sp. Y9602]
          Length = 137

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E      + +   D    R ++        ++DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELEFLTEQDVKDVDIAYFRELLAGVANSAEKLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLDELGQVERAILRLALFELSKRQDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +    
Sbjct: 127 LDKAGPH 133


>gi|311030979|ref|ZP_07709069.1| transcription antitermination protein NusB [Bacillus sp. m3-13]
          Length = 133

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 10/132 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    +R  +   +  +    I+    +     +             + +IV  T    
Sbjct: 1   MK-RSESRKKALQAIFQMDLSDIAPDEAITNVLEEGERPD------DFLSSIVFGTKEHQ 53

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID+ L   L   SL R     + +LR++V ++++  ++     ++ A+E AK    + 
Sbjct: 54  EEIDSTLKSHLEKWSLDRLGTVDRTILRMTVFEMMFVEEIPVNVSMNEAIELAKTF-GDD 112

Query: 119 HFAKLVNSILRR 130
             +  +N++L +
Sbjct: 113 KSSGFINAVLSK 124


>gi|253682288|ref|ZP_04863085.1| transcription antitermination factor NusB [Clostridium botulinum D
           str. 1873]
 gi|253562000|gb|EES91452.1| transcription antitermination factor NusB [Clostridium botulinum D
           str. 1873]
          Length = 135

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 4/135 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   +R ++  LL  +   +  L  ++   + ++    L   D   +  I+      +  
Sbjct: 2   NRRKSREIAMKLLFEMSINKEELKEII-HNFKENTDTSLKDVDFEYINKIIQGVQDNIET 60

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID+ ++  L    L R       +LR+S  +I++  D+ +   V+  +E AK+     + 
Sbjct: 61  IDSKIEENLTKWKLNRLSKIDLTILRISTYEIIFVEDIPEKVAVNEGIELAKKYSA-ENS 119

Query: 121 AKLVNSILRRVSREK 135
              +N +L  + + +
Sbjct: 120 PAFINGVLGNMMKIQ 134


>gi|307945261|ref|ZP_07660597.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4]
 gi|307771134|gb|EFO30359.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4]
          Length = 173

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +    + L+ ++         + L        D+   ++IVN       
Sbjct: 24  ARLAAVQALYQMDVGEVPLSSVISEFTAFRLGKELDGEQYLDADEQWFKSIVNGVFEDQK 83

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            +D  +   L     L R    L+ +LR    ++L   DV    ++   ++  K      
Sbjct: 84  FLDPFIHKALTEGWPLKRVDSLLRAILRSGSFELLRRKDVPPKVIISEYIDVTKAFY-EA 142

Query: 119 HFAKLVNSILRRVSR 133
               LVN +L R++ 
Sbjct: 143 DEPGLVNGVLDRLAH 157


>gi|145488288|ref|XP_001430148.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397244|emb|CAK62750.1| unnamed protein product [Paramecium tetraurelia]
          Length = 351

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 115/352 (32%), Gaps = 74/352 (21%)

Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI---RLKELP 209
                   G +  + + +  +  + I    +   E    +++  +LP   I         
Sbjct: 11  FREFLQEEGIDEEIFLFEQTLRYIRIKPDYQITFEQLQQQVSNQILPIYEIPTLYSLPAD 70

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQL-FGTLNNLSVLDLCAAPGGKTAQ---------- 258
           E I +L  + +G  +  D S++  V       N+ ++L++C APG K             
Sbjct: 71  EKISNLQLYKDGNLYGIDKSSAAVVYSLDINKNDTNLLEICCAPGAKLTFIADLLRLQTK 130

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCS 317
                 KV  +D+S+ RL   +  +++  L    ++I  D   Y  + LFD VL+DA C+
Sbjct: 131 EDGIQRKVFGVDISQNRLNITQSIVNKYKLEKFVELILEDGTKYKSEILFDKVLIDAECT 190

Query: 318 S--------------------------------------TGTIRRHPDVLWTRDTDDI-- 337
                                                  T T             +D   
Sbjct: 191 HEGSIKHLKKYINKPIQEKNTKKQQKNNKASKKQLQKNYTNTYTTEQTKANEWTEEDFNS 250

Query: 338 --------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
                    +    Q  LL  G   +K  G++++S CS  ++ +E+ + K L  +   + 
Sbjct: 251 RFLDQKKLQQIYDLQFSLLENGYRLLKQNGMLIYSTCSFSQKQNEDQIIKFLELNNDAIL 310

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           + P  S   +        +             + D   S   G F   +++L
Sbjct: 311 VNPFYSMNQQQCKSGKIFN-----------TIRFDPKVSNTGGMFIAKIKKL 351


>gi|222055768|ref|YP_002538130.1| NusB antitermination factor [Geobacter sp. FRC-32]
 gi|254772641|sp|B9M1E7|NUSB_GEOSF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221565057|gb|ACM21029.1| NusB antitermination factor [Geobacter sp. FRC-32]
          Length = 145

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQIL--VRAIVNV 55
           M S    R ++   L     +          +   + D +   L    +       +VN 
Sbjct: 1   MSSRREGRELALQALYSSDAESLGGTFALKKIMDNFADGSEPSLDVHGRSFTFATELVNG 60

Query: 56  TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
            L     ID  ++    + S+ R       +LR++V ++ Y  D+     ++ A+E AK+
Sbjct: 61  VLSNSEAIDRKIEEKSKNWSIARMAKVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKK 120

Query: 114 DKENRHFA 121
                  A
Sbjct: 121 FGAEDSPA 128


>gi|71023973|ref|XP_762216.1| hypothetical protein UM06069.1 [Ustilago maydis 521]
 gi|46101659|gb|EAK86892.1| hypothetical protein UM06069.1 [Ustilago maydis 521]
          Length = 590

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 105/355 (29%), Gaps = 61/355 (17%)

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200
                + IP W +         + +  +SD   + + +       I+ +A   +   L  
Sbjct: 163 YEQMTARIPRWIRINPLRATRDQVLQWLSDNRYTQVDVRDDEIGGIKQFAESTHVAGLLA 222

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260
                 +   +++    + E    +QD ++  P  +       SV+D  +APG KT+ L 
Sbjct: 223 ---FHPKATSALLKSEMYRENWIVMQDLASCFPAYILDPPAGSSVIDATSAPGNKTSHLS 279

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRL---------------------HLYAEDIIEMDAF 299
                 +       R++    +  R                                D  
Sbjct: 280 AIMHSKSGSTRENGRIDAFERDAARYKTLVKRLDAVGALALPRPQPTQHGNVTAHRRDFL 339

Query: 300 DYCPKKLFD--AVLVDAPCSSTGTIRRHPDVL-------------------WTRDTDDIV 338
              P    +   +L+D  CS +G + R   +                     T+    + 
Sbjct: 340 TTNPDDFPNVTHMLLDPSCSGSGIVNRLDFLKEDDDVEHDPLDADALDSDTTTKLARRLR 399

Query: 339 KSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           + + FQ+ ++     F  ++    VV+S CS+  Q++E VV   L++         L   
Sbjct: 400 QLSEFQQLMIRHAFKFPALRK---VVYSTCSVHAQENELVVINALQTHEAQSRGWKLAPR 456

Query: 397 YWKSIDMAMALSPEGW----------IRITP-DMLEKIDGVSSGMDGFFAVALRR 440
                   +    +            IR  P    E         +GFF     R
Sbjct: 457 KHVIPTWPVRGDTDACTGKHHVAESVIRCIPGGKGEGDKPNVESCNGFFVACFIR 511


>gi|57237437|ref|YP_178450.1| transcription antitermination protein NusB [Campylobacter jejuni
           RM1221]
 gi|86148965|ref|ZP_01067197.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88597364|ref|ZP_01100599.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|148926474|ref|ZP_01810157.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205355968|ref|ZP_03222736.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562040|ref|YP_002343819.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|22095973|sp|Q9PIC0|NUSB_CAMJE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|73621331|sp|Q5HW85|NUSB_CAMJR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|57166241|gb|AAW35020.1| transcription antitermination factor NusB [Campylobacter jejuni
           RM1221]
 gi|85840323|gb|EAQ57580.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190425|gb|EAQ94399.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359746|emb|CAL34532.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145844637|gb|EDK21743.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205346092|gb|EDZ32727.1| transcription termination protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284925653|gb|ADC28005.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315057805|gb|ADT72134.1| Transcription termination protein NusB [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315926706|gb|EFV06085.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 132

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 12/133 (9%)

Query: 1   MKSGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M +    R     LL       +  + +  +LD +   +  +            + N  L
Sbjct: 1   MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN-------FTLNLYNGIL 53

Query: 58  RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
             L  ID  L+  L  + +    +  + +LR+   ++L+ D     V++ A+E AK    
Sbjct: 54  DNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVINEAIELAKE-LA 112

Query: 117 NRHFAKLVNSILR 129
           N +  K +N +L 
Sbjct: 113 NDNSPKFINGVLD 125


>gi|258511747|ref|YP_003185181.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478473|gb|ACV58792.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 166

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR  +   L  V+  +  L     +    +     +  D   +  +V+ T R L  
Sbjct: 2   TRHEARECALQALC-VLDVQRDLGSAEAIASALAERGTDAGGDFTYIEELVDGTRRHLDE 60

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           ID +L   +   S  R     + +LR++  ++L+  ++   + +D AVE AK     + 
Sbjct: 61  IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIAKTFATEQS 119


>gi|323699091|ref|ZP_08111003.1| NusB antitermination factor [Desulfovibrio sp. ND132]
 gi|323459023|gb|EGB14888.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132]
          Length = 149

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 8   RLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           R ++  +L     + K   L      +         S+  +   R +V      L  ID 
Sbjct: 17  RTLAFQVLYSTHFLDKENPLDMDTLFDLNPMVVEQESETARAFARDLVRGVSVNLHDIDR 76

Query: 66  VLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
            ++       + R       +LR+S+ ++L+ D+   A ++ A+E +K   +++  +
Sbjct: 77  TIEEHSQHWKIERIAMVELSILRLSLYEMLFTDIPVKAAINEAIELSKTFGDDKSRS 133


>gi|120610904|ref|YP_970582.1| NusB antitermination factor [Acidovorax citrulli AAC00-1]
 gi|120589368|gb|ABM32808.1| NusB antitermination factor [Acidovorax citrulli AAC00-1]
          Length = 186

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R  +   L   +  R        ++          + D     A+++  +    
Sbjct: 37  SARSRSRAFALQALYQHIVGR---NEATAIDVFTRDLSGFHKADAAHYDALLHGCIENAG 93

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +DA++   L  +L          + + V +    LDV    V++  VE AK        
Sbjct: 94  ALDALIAPKLDRTLEEISPIEHATMWIGVYEFQNCLDVPWRVVINECVELAKEFGGTDGH 153

Query: 121 A 121
            
Sbjct: 154 K 154


>gi|239637666|ref|ZP_04678638.1| transcription antitermination factor NusB [Staphylococcus warneri
           L37603]
 gi|239596884|gb|EEQ79409.1| transcription antitermination factor NusB [Staphylococcus warneri
           L37603]
          Length = 128

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +    +  L   D   +  +V       P 
Sbjct: 2   SRKESRVQAFQTLFQLEIKDTDLTIKEAINFIKDDYPDL---DFDFINWLVTGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   SL R   + + +LR++  +IL+ D     V++ AVE AK+  ++ H+ 
Sbjct: 59  LDEKIKPYLKDWSLERLLKTDRIILRMATFEILHSDTPSKVVINEAVELAKQFSDDDHYK 118

Query: 122 KLVNSILRRVS 132
             +N +L  ++
Sbjct: 119 -FINGVLSNIN 128


>gi|213427852|ref|ZP_03360602.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 139

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  +   AR  +   L      +     + D+EY   A + +   D +  R +++    
Sbjct: 1   MKLAARHRARECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVAT 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               +D ++   L   L       + +LR+++ ++    DV     ++ A+E AK     
Sbjct: 58  NSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K VN +L +
Sbjct: 117 EDSHKFVNGVLDK 129


>gi|288553331|ref|YP_003425266.1| transcription antitermination protein NusB [Bacillus pseudofirmus
           OF4]
 gi|288544491|gb|ADC48374.1| transcription antitermination protein NusB [Bacillus pseudofirmus
           OF4]
          Length = 135

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + ARL ++  L  +      +   ++    D+  +            +V  T    
Sbjct: 1   MNRRL-ARLRAAQALYQMDLTGSEMESAIESVLEDNEKQS------EFFTQLVQGTTELK 53

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +ID  +   L   ++ R  +  + ++R+++ ++L   D+      + A+E AK      
Sbjct: 54  TKIDETISANLEGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELAKAFGGEE 113

Query: 119 HFAKLVNSILRR 130
              + VN +L +
Sbjct: 114 -AGRFVNGVLSK 124


>gi|328954274|ref|YP_004371608.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109]
 gi|328454598|gb|AEB10427.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109]
          Length = 142

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L  +      +     L +         +R+      +V         +DA 
Sbjct: 9   ARERALQCLYQIEITGREVEGAAALFWEHFHS---EERNSAYFHRLVAGVRGHCEELDAY 65

Query: 67  LDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +        L R     + +LR+++ ++L+  +V    VV+ AVE  KR     +    +
Sbjct: 66  ISRFSQHWRLERMASVDRNILRLAIFELLHCPEVPPKVVVNEAVELGKRF-GAENSGAFI 124

Query: 125 NSILRRV 131
           N IL   
Sbjct: 125 NGILDSF 131


>gi|319794181|ref|YP_004155821.1| nusb antitermination factor [Variovorax paradoxus EPS]
 gi|315596644|gb|ADU37710.1| NusB antitermination factor [Variovorax paradoxus EPS]
          Length = 178

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +  R   T  +D    D       + D     A+++ ++    
Sbjct: 32  SNRSRAREFALQALYQHLVGRNDPTD-IDHFTRD--LAGFHKADAAHYDALLHGSIDNAE 88

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ++DA++  +L             ++ + V +     DV    V++  +E AK        
Sbjct: 89  QLDALIRPLLDRKFEEISPIEHAVMWIGVYEFQNCPDVPWRVVLNECIELAKEFGGTDGH 148

Query: 121 A 121
            
Sbjct: 149 K 149


>gi|226366336|ref|YP_002784119.1| transcription antitermination protein NusB [Rhodococcus opacus B4]
 gi|254772652|sp|C1B4I5|NUSB_RHOOB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226244826|dbj|BAH55174.1| transcription antitermination protein NusB [Rhodococcus opacus B4]
          Length = 169

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD------QILVRAIVNVT 56
           +   AR  +   L     +       LD     +    LS +D            +V   
Sbjct: 10  ARHKARKRAVDFLFEAEARD------LDPVDLATERAELSGKDDSVAPVAPYTVTVVTGV 63

Query: 57  LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
              L R+D V+   L   +L R     + +LR++V ++ +  DV     VD AVE AK+ 
Sbjct: 64  AENLDRLDEVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQ- 122

Query: 115 KENRHFAKLVNSILRR 130
                    VN IL +
Sbjct: 123 LSTDESPGFVNGILGQ 138


>gi|258627344|ref|ZP_05722128.1| N utilization substance protein B [Vibrio mimicus VM603]
 gi|262166342|ref|ZP_06034079.1| transcription termination protein NusB [Vibrio mimicus VM223]
 gi|258580382|gb|EEW05347.1| N utilization substance protein B [Vibrio mimicus VM603]
 gi|262026058|gb|EEY44726.1| transcription termination protein NusB [Vibrio mimicus VM223]
          Length = 152

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQI 47
           MK     NAR  +   +      + ++  + +       +     R           D  
Sbjct: 1   MKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVS 60

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDL 106
             R ++   +     +D+ L   +   +         LLR+++ ++    DV    V++ 
Sbjct: 61  YFRDLLAGVVLNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 120

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSRE 134
           A+E AK         K VN +L + +  
Sbjct: 121 AIELAK-VFAAEDSHKFVNGVLDKAAPH 147


>gi|145588452|ref|YP_001155049.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046858|gb|ABP33485.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 174

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 11/127 (8%)

Query: 2   KSGMNARLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNV 55
                AR  +   +    VMR+  S    L      +         +     L + I + 
Sbjct: 31  TPRRRAREYALQGVYQSLVMRRAGS----LPNAAAIAKQLGEDPAFRRCQLDLFQGIFDG 86

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRD 114
            L     ++A++   L   +          L +   ++ + L V     ++ AVE AK  
Sbjct: 87  VLERTDELEAIITPALDRPINELSPVEHAALLIGAYELAIDLSVPYKVAINEAVELAKTF 146

Query: 115 KENRHFA 121
                  
Sbjct: 147 GGTDGHK 153


>gi|254511391|ref|ZP_05123458.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium KLH11]
 gi|221535102|gb|EEE38090.1| transcription antitermination factor NusB [Rhodobacteraceae
           bacterium KLH11]
          Length = 160

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   ARL +   L  + +   +   ++                +   D  + RA+V+ 
Sbjct: 16  MKS--AARLYAVQALFQMEQSGQTTEAVVTEFLDHRFGAVYEGEEMLDGDISVFRALVDN 73

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +   ID + D  L     + R   +L+ + R + A++   D     V+   V+ A+ 
Sbjct: 74  AVNYQAPIDQMTDRALVAKWPIARIDPTLRAVFRAAGAELTQSDTPPKVVITEFVDVARA 133

Query: 114 DKENRHFAKLVNSILRRV 131
                   K VN++L  +
Sbjct: 134 FFPEGKEPKFVNAVLDHM 151


>gi|193214274|ref|YP_001995473.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110]
 gi|238692701|sp|B3QV72|NUSB_CHLT3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|193087751|gb|ACF13026.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110]
          Length = 211

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R ++  +L     ++  +  +      +     +  +D   +  I+N  ++ +  
Sbjct: 4   SRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKD--FIFKIINSVIQNIQD 61

Query: 63  IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID  +     +  L R     + L+R+++A++LYL DV     ++ A+E AKR   ++  
Sbjct: 62  IDTHIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSS 121

Query: 121 A 121
            
Sbjct: 122 K 122


>gi|322390165|ref|ZP_08063697.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
           903]
 gi|321143125|gb|EFX38571.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
           903]
          Length = 143

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           S  + R  +   L  +      +         D       + D    +  +V    +   
Sbjct: 9   SRRDLRERAFQALMALEYDGDIVEACRFAYLHDKDLAEDKEVDLPAFLMNLVTGVYQSKD 68

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           ++D  +   L    ++ R     + +LR+ + ++   D      V+ AVE AK    +  
Sbjct: 69  QLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEMTEFDTPQIVAVNEAVELAKAF-SDET 127

Query: 120 FAKLVNSILRRV 131
            ++ VN +L + 
Sbjct: 128 SSRFVNGVLSQF 139


>gi|255658168|ref|ZP_05403577.1| transcription antitermination factor NusB [Mitsuokella multacida
           DSM 20544]
 gi|260849476|gb|EEX69483.1| transcription antitermination factor NusB [Mitsuokella multacida
           DSM 20544]
          Length = 143

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 10/140 (7%)

Query: 3   SGMNARLVSSHLLSCVMRK-RISLT-----CLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           S   AR V+   L  +      S         L ++        +S  D+  V  +V+ T
Sbjct: 2   SRRQAREVALQALFQLDLNPAESADQEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHGT 61

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKR 113
              L  IDA +        + R     + L R++  ++ + +        ++ AVE AK+
Sbjct: 62  RANLEAIDAQIAANSREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVELAKK 121

Query: 114 DKENRHFAKLVNSILRRVSR 133
                  ++ VN IL  + +
Sbjct: 122 Y-GTDDSSRYVNGILGAIMK 140


>gi|54025601|ref|YP_119843.1| transcription antitermination protein NusB [Nocardia farcinica IFM
           10152]
 gi|81602600|sp|Q5YTL2|NUSB_NOCFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54017109|dbj|BAD58479.1| putative transcription termination factor [Nocardia farcinica IFM
           10152]
          Length = 169

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 2/121 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR  +  LL     + +    LL      +             R +V      L R
Sbjct: 17  ARHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLHAYTRTLVEGVADELER 76

Query: 63  IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +D  ++  L   +L R     + +LRV+V ++ +  DV     VD AVE AK    +   
Sbjct: 77  VDGTIESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAVDEAVELAKELSTDDSP 136

Query: 121 A 121
           +
Sbjct: 137 S 137


>gi|238791410|ref|ZP_04635048.1| N utilization substance protein B [Yersinia intermedia ATCC 29909]
 gi|238729026|gb|EEQ20542.1| N utilization substance protein B [Yersinia intermedia ATCC 29909]
          Length = 138

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R +++        +DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDISYFRELLSGVAVNATSLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRQLEELGQVERAILRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|88811151|ref|ZP_01126407.1| transcription antitermination protein NusB [Nitrococcus mobilis
           Nb-231]
 gi|88791690|gb|EAR22801.1| transcription antitermination protein NusB [Nitrococcus mobilis
           Nb-231]
          Length = 157

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 5/125 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               L            +      +     ++  D      ++      L  +DA+++  
Sbjct: 21  VLQALYQWQLTAQDSAEIERQFLEEH---NMAHVDLEYFAELLYEIPARLASLDALIEPA 77

Query: 71  LISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   L       + +LR+   ++   LD+    VV+ AV+ A R        + +N +L 
Sbjct: 78  LDRPLAVIDPVEKAILRMGTYELTQRLDIPYRVVVNEAVDLA-RLFGAEQSHRYINGVLD 136

Query: 130 RVSRE 134
           RV   
Sbjct: 137 RVGHH 141


>gi|111024096|ref|YP_707068.1| transcription antitermination protein NusB [Rhodococcus jostii
           RHA1]
 gi|119390812|sp|Q0S0M6|NUSB_RHOSR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110823626|gb|ABG98910.1| N utilization substance protein B [Rhodococcus jostii RHA1]
          Length = 169

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD------QILVRAIVNVT 56
           +   AR  +   L     +       LD     +    LS +D            +V   
Sbjct: 10  ARHKARKRAVDFLFEAEARD------LDPVDLATERAELSGKDDSVAPVAPYTVTVVTGV 63

Query: 57  LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
              L R+D V+   L   +L R     + +LR++V ++ +  DV     VD AVE AK+ 
Sbjct: 64  AENLDRLDEVIRSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQ- 122

Query: 115 KENRHFAKLVNSILRR 130
                    VN IL +
Sbjct: 123 LSTDESPGFVNGILGQ 138


>gi|90410900|ref|ZP_01218914.1| transcription antitermination protein NusB [Photobacterium
           profundum 3TCK]
 gi|90328113|gb|EAS44424.1| transcription antitermination protein NusB [Photobacterium
           profundum 3TCK]
          Length = 155

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 13/141 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  +      D  F     +           D     
Sbjct: 8   AARRNARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPSLAAPHTDLNYFH 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            ++N  ++    +D+ +   L   L         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLNGVVQNHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMTKRDDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRR 130
            AK         K VN +L +
Sbjct: 128 LAK-LFGAEDSHKFVNGVLDK 147


>gi|331269441|ref|YP_004395933.1| transcription antitermination factor NusB [Clostridium botulinum
           BKT015925]
 gi|329125991|gb|AEB75936.1| transcription antitermination factor NusB [Clostridium botulinum
           BKT015925]
          Length = 135

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 4/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   +R ++  LL  +   +  L  ++   + ++    L   D   +  I+      +  
Sbjct: 2   NRRKSREIAMKLLFEMSINKEELKEII-HNFKENTDTNLKDVDFEYINKIIQGVQDNIED 60

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID+ ++  L    L R       +LR+S  +I+++ DV +   V+  +E AK+     + 
Sbjct: 61  IDSKIEENLTKWKLNRLSKMDLTILRISTYEIMFMEDVPEKVAVNEGIELAKKYSA-ENS 119

Query: 121 AKLVNSILRRV 131
              +N +L  +
Sbjct: 120 PAFINGVLGNM 130


>gi|254440807|ref|ZP_05054300.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 307]
 gi|198250885|gb|EDY75200.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 307]
          Length = 146

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     S+  +                 +++ D  L R +V  
Sbjct: 1   MKS--ASRLYAVQALFQMEHSNQSIESVTREFENHRFGAIYEGNEMAEGDVALFRILVET 58

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +    +ID + D  L     L R   +L+ L R +  ++L  D      +   V+ AK 
Sbjct: 59  AVNEQSKIDQMTDRALVAKWPLARIDPTLRALFRAAGVELLGRDTPPRVAITEYVDVAKA 118

Query: 114 DKENRHFAKLVNSILRRVSRE 134
             +     K VN++L  ++R+
Sbjct: 119 FFDGGEEPKFVNAVLDHMARQ 139


>gi|307718673|ref|YP_003874205.1| N-utilization substance protein B [Spirochaeta thermophila DSM
           6192]
 gi|306532398|gb|ADN01932.1| N-utilization substance protein B [Spirochaeta thermophila DSM
           6192]
 gi|315185797|gb|EFU19563.1| NusB antitermination factor [Spirochaeta thermophila DSM 6578]
          Length = 136

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+++   L             L++     A   + +  +   + ++  TL  L
Sbjct: 1   MGLRRKARILAFQALFASDGGGG---DGLEVFSFPWADGEIPEEVRTFAQLLLRGTLEHL 57

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
           P +D ++   L      R   + + +LR+SV  +LY  ++    ++D AVE AK+    +
Sbjct: 58  PEVDDLIKKHLEHWDFGRIARTDRAILRMSVYALLYQKEIPARVIIDEAVEIAKQF-GTQ 116

Query: 119 HFAKLVNSILR 129
              + VN +L 
Sbjct: 117 DSYRFVNGVLD 127


>gi|170028291|ref|XP_001842029.1| Nop2p [Culex quinquefasciatus]
 gi|167874184|gb|EDS37567.1| Nop2p [Culex quinquefasciatus]
          Length = 492

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 26/236 (11%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279
           ++ D ++ +P           VLD CAAPGGK       +    +   DV + R+ ++  
Sbjct: 262 FLLDGASILPALALDVQPGDRVLDACAAPGGKSLLLLQTLRPGTLVCNDVQESRVNRIRK 321

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWT 331
                              I   DA +     ++D +LVD PC++     +    ++  +
Sbjct: 322 LMGSYLYDFSANWKQKRCFITHGDARNLTEYDMYDRILVDVPCTTDRHSVMENDNNIFKS 381

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387
               + ++    Q  LL   +  ++PGG +V+S CSL    ++ VV   L +    + + 
Sbjct: 382 SRVKERLRLPELQAGLLANCLRLLRPGGSLVYSTCSLSPVQNDGVVHMALSNVFNDTGMT 441

Query: 388 VELVPLNSAYWKSID---MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           V +  L+       D    A   + +    + P +              +   L R
Sbjct: 442 VTVRDLSQVMQPFSDMYKFAYPNTLKYGQLVLPFLPVNFGP-------MYFCKLVR 490


>gi|325183686|emb|CCA18145.1| tRNA (cytosine5)methyltransferase NSUN2like protein putative
           [Albugo laibachii Nc14]
          Length = 709

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 98/308 (31%), Gaps = 51/308 (16%)

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
               +  +                L  +   +     F  G+    D + +I  +L    
Sbjct: 181 WTSHNKHSLWKVSVDAKTFRKKESLMNIYNFVYENTKF--GLIIRHDPTINILPELLSIQ 238

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALD-----------VSKRRLEKLRCNLDRLHLY 289
           ++  +LDLC   G    +  V   + ++ D           ++   +     +       
Sbjct: 239 SSDRILDLCGGGGENGIRAPVIAERFSSPDSTGVLVVNETSIASGTVAIRNLSRTLTCSA 298

Query: 290 AEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQ 344
              +      DY   +      D VL   PCS  G I R+    W        V++   Q
Sbjct: 299 NVIVTTHRILDYPQMESMNDGFDRVLCMVPCSGDGLI-RNCPEKWRTWTALKGVENHSKQ 357

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM- 403
            KLL + +S VK GG V++   S++  ++E VV  VL +    VELV ++S   +     
Sbjct: 358 IKLLTKALSLVKVGGTVLYCTRSMNPIENEAVVTAVLDNGLCEVELVDIHSIIDEKFPAF 417

Query: 404 -------AMALSPEGWIRI------------------TP------DMLEKIDGVSSGMDG 432
                  + A+  E    +                   P      D   ++    +    
Sbjct: 418 LKHPGVESWAVFGEEMQTLSSCEKLNEKDKTKFSSTMWPKPKRNLDRCVRVLPHENDTHA 477

Query: 433 FFAVALRR 440
           FF  AL +
Sbjct: 478 FFFAALTK 485


>gi|241767422|ref|ZP_04765122.1| NusB antitermination factor [Acidovorax delafieldii 2AN]
 gi|241361805|gb|EER58071.1| NusB antitermination factor [Acidovorax delafieldii 2AN]
          Length = 174

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +         +D    D       + D     A+++  +    
Sbjct: 35  SNRSRAREFALQALYQHIVGGNEA-AAIDAFTRD--LAGFHKADAAHYDAVLHGCIDAAA 91

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +DA++  +L   +       +  + + V +  + LDV    V++  +E AK        
Sbjct: 92  DLDALITPLLDRKMAEISPIERATMWIGVYEFQHCLDVPWRVVLNECIELAKEFGGTDGH 151

Query: 121 A 121
            
Sbjct: 152 K 152


>gi|323138566|ref|ZP_08073634.1| NusB antitermination factor [Methylocystis sp. ATCC 49242]
 gi|322396200|gb|EFX98733.1| NusB antitermination factor [Methylocystis sp. ATCC 49242]
          Length = 150

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 9/135 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLR 58
              ARL     L  +      L  +          R +        +    R ++   L 
Sbjct: 6   RSAARLAIVQALYQMEVAGKGLNEIFAEFESHWIGREIEGVQYKPAEVTFFRDVLQGVLT 65

Query: 59  FLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
               ID  +D VL     L R +  ++  LR    ++    DV    V+   V+ A    
Sbjct: 66  DQVAIDRQIDRVLSGGWPLSRVEAVMRAALRAGAYELRARKDVPARVVIKEYVDVAGAFF 125

Query: 116 ENRHFAKLVNSILRR 130
                + +VN++L +
Sbjct: 126 GPTE-SGMVNAVLDK 139


>gi|167628417|ref|YP_001678916.1| transcription antitermination factor nusb [Heliobacterium
           modesticaldum Ice1]
 gi|238687883|sp|B0TEI6|NUSB_HELMI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167591157|gb|ABZ82905.1| transcription antitermination factor nusb [Heliobacterium
           modesticaldum Ice1]
          Length = 206

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L      R+     L      S    +S+      R +V   +     ID  +
Sbjct: 7   RETALQTLFMADVGRMEPAYALQYA---SEEFGISEAAAAFARELVEGAVANRETIDGNI 63

Query: 68  DFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
             +    +L R  +  + LLRV++ ++L+  D+   A ++ A+E AK    N   AK VN
Sbjct: 64  RRLAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAK-IYANEESAKFVN 122

Query: 126 SILRR 130
            IL +
Sbjct: 123 GILGQ 127


>gi|304436643|ref|ZP_07396612.1| transcription antitermination factor NusB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370339|gb|EFM23995.1| transcription antitermination factor NusB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 137

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 4/136 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  +AR  +   L      +     +   +    A   L+++D      +V  T    P 
Sbjct: 2   SRRHAREAALLTLFQREFDQDRPPTVAAGDLASDAVDGLTEKDLAYANGLVQGTCSVQPE 61

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRH 119
           IDA ++ +     L R     + L+R++  ++ Y    +     ++ AVE AK+   +  
Sbjct: 62  IDAAIERMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKY-GSDD 120

Query: 120 FAKLVNSILRRVSREK 135
             + VN IL  + +  
Sbjct: 121 AGRYVNGILAALQKSM 136


>gi|224071335|ref|XP_002303410.1| predicted protein [Populus trichocarpa]
 gi|222840842|gb|EEE78389.1| predicted protein [Populus trichocarpa]
          Length = 394

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 21/165 (12%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT---------RDTDDI 337
            L  +++ +  +        +D VLVDA C+  G+IR                  + +  
Sbjct: 241 GLSKDELYQTVSSSEVSSSGYDKVLVDAECTHDGSIRHIQKFEHWGWETLNGRVLNAERS 300

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q KLL+ G   ++ GG +V+S CSL    +E VV+  L+ +          +  
Sbjct: 301 DNLTTLQLKLLINGFRLLRVGGSLVYSTCSLTVSQNENVVEWFLKENSSAALQEIEAAKD 360

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           W      +  +    +R  P        V+S   G F     +L 
Sbjct: 361 WPCKSGRIPKT----LRFDP--------VTSKTSGLFVAKFTKLA 393


>gi|289706203|ref|ZP_06502566.1| transcription antitermination factor NusB [Micrococcus luteus SK58]
 gi|289557042|gb|EFD50370.1| transcription antitermination factor NusB [Micrococcus luteus SK58]
          Length = 150

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R  +  +L    ++    +  L+          L        + +V   +    
Sbjct: 16  TARSRSRQRAVEILFEAEQRG---STALEGIRTRRESTDLQVN--AYTQRLVEGVIADQE 70

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           R+D  L       SL R       +LRV   ++L+  DV D   +  AV  A        
Sbjct: 71  RLDEALSSYSRGWSLDRMPAVDLAILRVGAWELLFQDDVPDAVAISEAVALA-AQLSTDD 129

Query: 120 FAKLVNSILRRVSR 133
             + VN +L R+ +
Sbjct: 130 SPEFVNGLLGRLQQ 143


>gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pseudonocardia sp. P1]
          Length = 139

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M++   AR  +  +L     +  +   +L           + +        +V       
Sbjct: 1   MRARTKARKRALDILFEAEARGEAPLEVLTARRETDDAPPVQE----YAARLVEGVATHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID +L       ++ R     + LLR+ V ++L+  DV D   +  AVE A R     
Sbjct: 57  ERIDQLLAEHAEGWTVDRMPAVDRGLLRIGVYELLWVDDVDDPVAITEAVELA-RTLSTD 115

Query: 119 HFAKLVNSILRR 130
              + VN +L +
Sbjct: 116 DSPRYVNGVLGQ 127


>gi|241761517|ref|ZP_04759604.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|283856498|ref|YP_163287.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373825|gb|EER63358.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|283775502|gb|AAV90176.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 157

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56
            +   ARL +   L     ++  L  LLD  +       +        +      IV   
Sbjct: 11  NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRGV 70

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
                 ID V+   L    SL R    ++Q+LR    ++L   DV    V+   ++ A  
Sbjct: 71  GTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATVISEYIDVANA 130

Query: 114 DKENRHFAKLVNSILRR 130
              +R     VN +L  
Sbjct: 131 FY-DRQEKNFVNGLLDT 146


>gi|229823019|ref|ZP_04449089.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271]
 gi|229787832|gb|EEP23946.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271]
          Length = 154

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTC----LLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M +    R  +   +  ++R ++ ++        LE G+         D   +  +V   
Sbjct: 11  MSNRHQVREKAVQTIFQLIRPQVPVSLDQACAFALEAGNDPEAGFEGSD-AYLDRLVQGV 69

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY---LDVADYAVVDLAVEQA 111
            +    +D  +   L    +L R       +LRV+  ++LY    +V     V+ AVE A
Sbjct: 70  NQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVNEAVELA 129

Query: 112 KRDKENRH 119
           K   +++ 
Sbjct: 130 KTFSDDKS 137


>gi|30250477|ref|NP_842547.1| antitermination protein NusB [Nitrosomonas europaea ATCC 19718]
 gi|39931886|sp|Q82S07|NUSB_NITEU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|30139318|emb|CAD86470.1| Antitermination protein NusB [Nitrosomonas europaea ATCC 19718]
          Length = 167

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 5/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++   +        +   +             S+ D      ++   L     +   
Sbjct: 26  SRELALQGIYQWQVTGGNARDI---GMQLQQVSFFSKADGPYFSDLLQGVLEHAADLQTQ 82

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +   L   +         +L +   +++Y  ++   A+++ A+E AK         K VN
Sbjct: 83  IQPHLDRQIAELSPVECSILLIGTYEMVYRPEIPCRAIINEAIELAKSYGGTDG-HKYVN 141

Query: 126 SILRR 130
            +L +
Sbjct: 142 GVLDK 146


>gi|213691632|ref|YP_002322218.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254772616|sp|B7GPW0|NUSB_BIFLI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|213523093|gb|ACJ51840.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457719|dbj|BAJ68340.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 187

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  + + L     K   +  LLD        +            IV       
Sbjct: 1   MA-RSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPD---YAIEIVKGVAEHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +ID  LD       + R     + +LR++  +IL+  DV D   +D A+  AK   ++ 
Sbjct: 57  RQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDD 116

Query: 119 HFA 121
             A
Sbjct: 117 SPA 119


>gi|229524269|ref|ZP_04413674.1| transcription termination protein NusB [Vibrio cholerae bv.
           albensis VL426]
 gi|229337850|gb|EEO02867.1| transcription termination protein NusB [Vibrio cholerae bv.
           albensis VL426]
          Length = 156

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  + +       +     R           D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            ++   +     +D+ L   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|89055903|ref|YP_511354.1| NusB antitermination factor [Jannaschia sp. CCS1]
 gi|88865452|gb|ABD56329.1| NusB antitermination factor [Jannaschia sp. CCS1]
          Length = 165

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVTLR 58
              ARL +   L  +     SL  +                 L++ D  L R  +   + 
Sbjct: 22  RSAARLYAVQALFQMEHSNQSLDEVRQEFETHRFGAVYEGDELAEGDPNLFRRTLEGAVE 81

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
               ID + D  L     + R   +L+ L R + A+++        V+   V+ A+    
Sbjct: 82  RQALIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELVEGTAPPKVVITEFVDVARAFFP 141

Query: 117 NRHFAKLVNSILRRV 131
               AK VN++L  +
Sbjct: 142 EGKEAKFVNAVLDHM 156


>gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthrobacter sp. FB24]
 gi|166215661|sp|A0JX79|NUSB_ARTS2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116610925|gb|ABK03649.1| NusB antitermination factor [Arthrobacter sp. FB24]
          Length = 136

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ +S   +L     +   ++++         IV   +   
Sbjct: 1   MSARGKARNRALDVLFEAEQRSLSAFDVL-RSRREKTDQIVNP----YTLEIVEGVVSHQ 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID  L+      +L R     + +LR+   ++LY  DV D   V  AV  AK      
Sbjct: 56  AAIDEFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKT-LSTD 114

Query: 119 HFAKLVNSILRRVSR 133
                +N +L R+ +
Sbjct: 115 ESPSFINGLLGRLQQ 129


>gi|58267524|ref|XP_570918.1| nucleus protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134112207|ref|XP_775079.1| hypothetical protein CNBE3530 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257731|gb|EAL20432.1| hypothetical protein CNBE3530 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227152|gb|AAW43611.1| nucleus protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 566

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 89/252 (35%), Gaps = 38/252 (15%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTAQL---IVSGAKVTAL 269
             +  G   +QD ++  P ++            LD  +APG KT+ +   + +  K+ A 
Sbjct: 236 EWYEGGGVILQDKASCFPARVLMEGWVEGEGECLDATSAPGNKTSYVSALMANRGKLHAF 295

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRR- 324
           + S  R + L   L++           D  D  PK         +L+D  CS +G + R 
Sbjct: 296 ERSPNRFKTLEKMLEKARCSNVQAQRADFTDTDPKSKEFKNVTRILLDPSCSGSGIVNRL 355

Query: 325 ------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
                   +   ++    + K A FQ +++L    F      +V+S CS+  ++ E VV 
Sbjct: 356 DYLVDDDAEESDSKTER-LEKLASFQLQMILHAFKF-PSAQRIVYSTCSIHPEEDERVVM 413

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----------GWIRITPDMLEKIDGVSS 428
             L+S+        L S             PE          G IR  P           
Sbjct: 414 AALQSNTAKENGWGLASRESVLPKWERRGRPEEMEGDEELANGVIRCLP---------ED 464

Query: 429 GMDGFFAVALRR 440
             +GFF     R
Sbjct: 465 KTNGFFVSCFMR 476


>gi|28897457|ref|NP_797062.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153840491|ref|ZP_01993158.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ3810]
 gi|260364269|ref|ZP_05776968.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           K5030]
 gi|260876417|ref|ZP_05888772.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AN-5034]
 gi|260898688|ref|ZP_05907184.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           Peru-466]
 gi|260899217|ref|ZP_05907612.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ4037]
 gi|31076798|sp|Q87RU3|NUSB_VIBPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28805669|dbj|BAC58946.1| N utilization substance protein B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149745845|gb|EDM56975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ3810]
 gi|308086855|gb|EFO36550.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           Peru-466]
 gi|308092966|gb|EFO42661.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AN-5034]
 gi|308106640|gb|EFO44180.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           AQ4037]
 gi|308113746|gb|EFO51286.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           K5030]
          Length = 155

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  + +       +     R           D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            +++  +     +D+ +   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  ELLSGVVLSHAELDSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|28199615|ref|NP_779929.1| transcription antitermination protein NusB [Xylella fastidiosa
           Temecula1]
 gi|182682359|ref|YP_001830519.1| transcription antitermination protein NusB [Xylella fastidiosa M23]
 gi|32129808|sp|Q87AS8|NUSB_XYLFT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691093|sp|B2I8Q4|NUSB_XYLF2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28057730|gb|AAO29578.1| transcription termination factor [Xylella fastidiosa Temecula1]
 gi|182632469|gb|ACB93245.1| NusB antitermination factor [Xylella fastidiosa M23]
 gi|307578641|gb|ADN62610.1| transcription antitermination protein NusB [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 157

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           +            ++     + A+      D +    +V   L     +D  L   L  +
Sbjct: 33  VYAWQISGGVAKQVIAHFAHEQAY---EVADLVYFEDLVEGVLTHCAELDEKLTPYLDRT 89

Query: 75  LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +       + +LR+   ++LY  DV    V++ A+  AKR   +++    VN +L R
Sbjct: 90  IEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRF-GSKYGHTYVNGVLDR 145


>gi|71898912|ref|ZP_00681079.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|71731324|gb|EAO33388.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
          Length = 157

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           +            ++     + A+      D +    +V   L     +D  L   L  +
Sbjct: 33  VYAWQISGGVAKQVIAHFAHEQAY---EVADLVYFEDLVEGVLTHCAELDEKLTPYLDRT 89

Query: 75  LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +       + +LR+   ++LY  DV    V++ A+  AKR   +++    VN +L R
Sbjct: 90  IEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRF-GSKYGHTYVNGVLDR 145


>gi|170744825|ref|YP_001773480.1| NusB antitermination factor [Methylobacterium sp. 4-46]
 gi|168199099|gb|ACA21046.1| NusB antitermination factor [Methylobacterium sp. 4-46]
          Length = 156

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 11/140 (7%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIV 53
           MK      ARL     L  +      +   L         +++        +    R ++
Sbjct: 1   MKPAERSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIEHPPAETAFFRDVL 60

Query: 54  NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQ 110
              +     ID  LD  L     L R +  L+ +LR    ++++  DV     +   V+ 
Sbjct: 61  RGAVEEQRLIDQRLDGALSAGWPLRRIEAVLRAILRAGAYEVIFRKDVPVRVAISEYVDV 120

Query: 111 AKRDKENRHFAKLVNSILRR 130
           A           LVN++L +
Sbjct: 121 AHSFYGGDE-PGLVNAVLDK 139


>gi|218781155|ref|YP_002432473.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01]
 gi|226738896|sp|B8FJ78|NUSB_DESAA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218762539|gb|ACL05005.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01]
          Length = 143

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRF 59
           M     AR ++   L  V          LDL   +        +D       +    +  
Sbjct: 1   MGKRRRARELALQSLFYVDSTSAPPLEALDLFCQNFP----PPKDLAQFFYELAKGVINN 56

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID +++    +  L R       L+R++  + L+  DV     ++ A++  KR    
Sbjct: 57  QDEIDRLIEQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIGKRF-GT 115

Query: 118 RHFAKLVNSILRRVSRE 134
                 +N IL  +   
Sbjct: 116 AESGAFINGILDSIHLH 132


>gi|47230531|emb|CAF99724.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 348

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 10/205 (4%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL------DVSKR 274
             +++ +A++ +PV      +   +LDLC+APGGK   ++                  K 
Sbjct: 104 KQYYLLNAASLLPVLALKVRDGEKILDLCSAPGGKALVIMQCATPELLCCNEPDPHRQKW 163

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTI-RRHPDVLWT 331
             + L   L         +   D   +  ++   +D VLVDAPCS+  +           
Sbjct: 164 LTKTLESFLPHSVASRVIVSAHDGRYFGQREVGKYDKVLVDAPCSNDRSWLYSPSSQQGE 223

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
           +   +       Q +LL   +S V+PGG+VV+S C+L   ++  VV+ VL+  P   E  
Sbjct: 224 QRLKERAMLPVLQAQLLKSALSAVRPGGVVVYSTCTLSGAENYSVVETVLKDCP-EAEPE 282

Query: 392 PLNSAYWKSIDMAMALSPEGWIRIT 416
            L      S          G   + 
Sbjct: 283 DLLEELSVSTSKYFTFFKPGGHTLH 307


>gi|322382777|ref|ZP_08056621.1| transcription antitermination-like protein NusB [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153246|gb|EFX45692.1| transcription antitermination-like protein NusB [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 133

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVLISS-LPR 77
           + ++  ++D    ++   +    D   +  +  +V  TL    RID +L   L    + R
Sbjct: 9   KEAVDSVIDEALHENEGAVDLNGDTSAKPYIHELVEGTLTNRERIDQILSEYLKGWQMDR 68

Query: 78  KKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
                +++LR++  ++LY  D     VV+ A+E AK         K VN +L ++ +E 
Sbjct: 69  LSKVDREVLRMAAYEMLYRQDTPPKVVVNEAIELAK-HFGTDESGKFVNGVLGKLIKEM 126


>gi|188582598|ref|YP_001926043.1| NusB antitermination factor [Methylobacterium populi BJ001]
 gi|179346096|gb|ACB81508.1| NusB antitermination factor [Methylobacterium populi BJ001]
          Length = 172

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
            +   ARL     L  +      +   L         + +        +    R ++   
Sbjct: 18  NTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDGVVHPPAETAFFRDVLRGA 77

Query: 57  LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
           +     ID  LD  L     L R +  L+ +LR    ++++  DV   A +   V+ A  
Sbjct: 78  VEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRRDVPARAAISQYVDVAHS 137

Query: 114 DKENRHFAKLVNSILRR 130
                    +VN++L R
Sbjct: 138 FYGGDE-PGMVNAVLDR 153


>gi|324999326|ref|ZP_08120438.1| tRNA/rRNA cytosine-C5-methylase [Pseudonocardia sp. P1]
          Length = 108

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL--RSSPIP 387
           W R  +D       QR+LL+  +  V+PGG+V +  CS    ++  VV +++     P P
Sbjct: 1   WRRRPEDTAALTRLQRELLVAALGHVRPGGVVAYVTCSPHVSETAGVVGRIVGREDRPGP 60

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              V    A          L     +++ P           G D  F   +R+
Sbjct: 61  AGPVEQLDARACLPADLPGLGDGPAVQLWPH--------RHGTDAMFLALIRK 105


>gi|183601040|ref|ZP_02962533.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827]
 gi|188019378|gb|EDU57418.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827]
          Length = 138

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +        +++ +      +   + +S  D I  R +++       ++D ++ 
Sbjct: 11  ECAVQAIYSWQLSGNNVSDVEYEFIAE---QDMSDVDVIYFRELLSGVANNAAKLDQLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LRV++ ++ Y  DV     ++  +E AK         K VN +
Sbjct: 68  PFLSRQLEELGQVEKAILRVAMYELSYREDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|297584560|ref|YP_003700340.1| NusB antitermination factor [Bacillus selenitireducens MLS10]
 gi|297143017|gb|ADH99774.1| NusB antitermination factor [Bacillus selenitireducens MLS10]
          Length = 134

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  + AR+ +   L  V    ++    +     ++        D  L+  +V   L  +
Sbjct: 1   MKRRV-ARIKAIQALYQVEMTGVNPEEAIKTVLEEN-----ESMDPYLLT-LVERVLEEM 53

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             +D  +   + +  L R     + ++R+++ ++++  DV     ++ A++ A+    + 
Sbjct: 54  DELDIKIQDSMDNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLARGFSGDE 113

Query: 119 HFAKLVNSILRR 130
              K VN +L  
Sbjct: 114 ESGKFVNGVLSN 125


>gi|58267526|ref|XP_570919.1| nucleus protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227153|gb|AAW43612.1| nucleus protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 543

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 89/252 (35%), Gaps = 38/252 (15%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTAQL---IVSGAKVTAL 269
             +  G   +QD ++  P ++            LD  +APG KT+ +   + +  K+ A 
Sbjct: 213 EWYEGGGVILQDKASCFPARVLMEGWVEGEGECLDATSAPGNKTSYVSALMANRGKLHAF 272

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRR- 324
           + S  R + L   L++           D  D  PK         +L+D  CS +G + R 
Sbjct: 273 ERSPNRFKTLEKMLEKARCSNVQAQRADFTDTDPKSKEFKNVTRILLDPSCSGSGIVNRL 332

Query: 325 ------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
                   +   ++    + K A FQ +++L    F      +V+S CS+  ++ E VV 
Sbjct: 333 DYLVDDDAEESDSKTER-LEKLASFQLQMILHAFKF-PSAQRIVYSTCSIHPEEDERVVM 390

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----------GWIRITPDMLEKIDGVSS 428
             L+S+        L S             PE          G IR  P           
Sbjct: 391 AALQSNTAKENGWGLASRESVLPKWERRGRPEEMEGDEELANGVIRCLP---------ED 441

Query: 429 GMDGFFAVALRR 440
             +GFF     R
Sbjct: 442 KTNGFFVSCFMR 453


>gi|268315608|ref|YP_003289327.1| NusB antitermination factor [Rhodothermus marinus DSM 4252]
 gi|262333142|gb|ACY46939.1| NusB antitermination factor [Rhodothermus marinus DSM 4252]
          Length = 165

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S    R      L        +   ++D     +               +   T+ + 
Sbjct: 1   MHSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREA--LRFATQLFLRTINYS 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              D ++   + +  L R     + LLR+++ ++L + D+     ++ A+E AK+    +
Sbjct: 59  EEADRLIADHVKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIELAKKYSTEK 118

Query: 119 H 119
            
Sbjct: 119 S 119


>gi|317010284|gb|ADU84031.1| transcription antitermination protein NusB [Helicobacter pylori
           SouthAfrica7]
          Length = 138

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVIELLYAFESGNEEIKKIAPSMLEEKKIKN---NQLAFALSLFNGVLEKI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|109946871|ref|YP_664099.1| transcription antitermination protein NusB [Helicobacter
           acinonychis str. Sheeba]
 gi|122973428|sp|Q17Z26|NUSB_HELAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|109714092|emb|CAJ99100.1| transcription termination protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 138

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVIELLYAFESGNEEIKKIAPSMLEEKKIKN---NQLAFALSLFNGVLEKI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|257216462|emb|CAX82436.1| Putative methyltransferase NSUN5 [Schistosoma japonicum]
          Length = 575

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 93/303 (30%), Gaps = 66/303 (21%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257
                + +     ++  L  +      +QD ++    ++     N  VLD CAAPG KT+
Sbjct: 215 HFPHMLLVFSSGTALYELELYKSRCILIQDKASCFSTEILQPDPNSDVLDACAAPGNKTS 274

Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA----- 309
           Q   ++ S + V A D    R + L  NL    +    +I  D  +   K          
Sbjct: 275 QLISMMSSKSTVFAFDRDPNRFQCLTENLVANGVDRLSVI--DWPNSDSKHNKHRKSLQS 332

Query: 310 ---------------------------VLVDAPCSSTGTIRRHPDVLWTRDTDDIV---- 338
                                      +L+D  CS +G   R PD         +     
Sbjct: 333 SQPFVEASCTDFLSVDPYDPKFSNVQSILLDPSCSGSGLSIRQPDGEQQLKNSQLKGDYS 392

Query: 339 -------------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
                        + +  Q  LL   ++F      +V+S CS+  +++E VVQ+      
Sbjct: 393 TDTYNEEYLSRLKRLSNLQAMLLRHALNFPNVQ-RIVYSTCSIHPEENEAVVQENANRVS 451

Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID--------GVSSGMDGFFAVA 437
               L  +   +  +I +    +     ++                       +GFF   
Sbjct: 452 DKFYLETI---WPNTIPLNSVDNITATPQVWKHRGLSEYQCESCIRSSQKDLTNGFFVAL 508

Query: 438 LRR 440
             R
Sbjct: 509 FVR 511


>gi|289550704|ref|YP_003471608.1| Transcription termination protein NusB [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658200|ref|ZP_07911072.1| transcription antitermination factor NusB [Staphylococcus
           lugdunensis M23590]
 gi|289180236|gb|ADC87481.1| Transcription termination protein NusB [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496529|gb|EFU84852.1| transcription antitermination factor NusB [Staphylococcus
           lugdunensis M23590]
          Length = 128

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R  +   L  +  K   L+    + +       L   D   +  +V       P 
Sbjct: 2   SRKESRTQAFQTLFQLEMKDSDLSISEAINFIKDDHPDL---DFTFIHWLVTGVKDHEPI 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  ++  L   SL R   + + +LR++  ++L+ D     +++ AVE  K+  ++ H+ 
Sbjct: 59  LDKAIEPHLKDWSLNRLLKTDRIILRMATFELLHSDTPPKVIINEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRRVS 132
             +N +L  ++
Sbjct: 119 -FINGVLSNIN 128


>gi|308183797|ref|YP_003927930.1| transcription antitermination protein NusB [Helicobacter pylori
           SJM180]
 gi|308059717|gb|ADO01613.1| transcription antitermination protein NusB [Helicobacter pylori
           SJM180]
          Length = 138

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEGIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|283955145|ref|ZP_06372647.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793358|gb|EFC32125.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 132

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL        +    +D    +   R      +     + +  L  L
Sbjct: 1   MATRHQVRQSVISLLYAFELNSQN-DVFIDEILDEKKIRN---EQKNFTLNLYHGILDNL 56

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID  L+  L  + +    +  + +LR+   ++L+ D     V++ A+E AK    N +
Sbjct: 57  SNIDETLNSFLNDNQITALGHVERAILRLGAYELLFSDTPSAIVINEAIELAKE-LANDN 115

Query: 120 FAKLVNSILR 129
             K +N +L 
Sbjct: 116 SPKFINGVLD 125


>gi|119502844|ref|ZP_01624929.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2080]
 gi|119461190|gb|EAW42280.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2080]
          Length = 148

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   L      R +L  +      D+ F  +        R+++   ++    +D+  + +
Sbjct: 18  ALQGLYQWSMTRANLAEIEAEFRIDNDFSHVDGE---YYRSLLTGVVQDAGDLDSSFEQL 74

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   L       + LLR+   ++   +DV    V++ +V  AK+      + + +N +L 
Sbjct: 75  LDRPLDELDPVERALLRLGTFELKERIDVPYRVVINESVALAKKFGATDSY-RYINGVLD 133

Query: 130 RVSREKIE 137
           +V+R   +
Sbjct: 134 KVARSYRQ 141


>gi|87308019|ref|ZP_01090161.1| probable N utilization substance protein B-like [Blastopirellula
           marina DSM 3645]
 gi|87289101|gb|EAQ80993.1| probable N utilization substance protein B-like [Blastopirellula
           marina DSM 3645]
          Length = 137

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M      R V   +L             +   +     +          R+++       
Sbjct: 1   MSKRSRVREVVLQILYQ-EDLNPEADIGVSERFLRGRLKHTEDL-VAFGRSLLVGVRLHR 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             IDA ++    + SL R   + + +LR+   +IL+ +  D   ++ AVE +KR   ++H
Sbjct: 59  KAIDAKIEAFAENWSLARMAVTDRNVLRIGAFEILFSETPDRVAINEAVELSKRF-GSKH 117

Query: 120 FAKLVNSILRR 130
             + VN +L R
Sbjct: 118 SPQFVNGLLDR 128


>gi|31793715|ref|NP_856208.1| transcription antitermination protein NusB [Mycobacterium bovis
           AF2122/97]
 gi|121638417|ref|YP_978641.1| transcription antitermination protein NusB [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|215427926|ref|ZP_03425845.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T92]
 gi|215431478|ref|ZP_03429397.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
 gi|219558534|ref|ZP_03537610.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T17]
 gi|224990911|ref|YP_002645598.1| transcription antitermination protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260187545|ref|ZP_05765019.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201657|ref|ZP_05769148.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T46]
 gi|260205850|ref|ZP_05773341.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis K85]
 gi|289444068|ref|ZP_06433812.1| transcription antitermination factor NusB [Mycobacterium
           tuberculosis T46]
 gi|289448181|ref|ZP_06437925.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289570699|ref|ZP_06450926.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T17]
 gi|289575238|ref|ZP_06455465.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           K85]
 gi|289751150|ref|ZP_06510528.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T92]
 gi|289754643|ref|ZP_06514021.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
 gi|39931755|sp|Q7TYC8|NUSB_MYCBO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215697|sp|A1KLN0|NUSB_MYCBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772648|sp|C1AF01|NUSB_MYCBT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|31619309|emb|CAD94747.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium
           bovis AF2122/97]
 gi|121494065|emb|CAL72543.1| N utilization substance protein nusB [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774024|dbj|BAH26830.1| transcription antitermination protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289416987|gb|EFD14227.1| transcription antitermination factor NusB [Mycobacterium
           tuberculosis T46]
 gi|289421139|gb|EFD18340.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289539669|gb|EFD44247.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           K85]
 gi|289544453|gb|EFD48101.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T17]
 gi|289691737|gb|EFD59166.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           T92]
 gi|289695230|gb|EFD62659.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis EAS054]
          Length = 156

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL     + IS   ++D     +  +    R      A+          I
Sbjct: 10  RHQARKRAVDLLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++   L   +L R     + +LRVSV ++L+  DV +  VVD AV+ AK         
Sbjct: 70  DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSP 128

Query: 122 KLVNSILRRVS 132
             VN +L +V 
Sbjct: 129 GFVNGVLGQVM 139


>gi|71276430|ref|ZP_00652706.1| Antitermination protein NusB [Xylella fastidiosa Dixon]
 gi|71900509|ref|ZP_00682639.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|170730978|ref|YP_001776411.1| transcription antitermination protein NusB [Xylella fastidiosa M12]
 gi|238687943|sp|B0U4K2|NUSB_XYLFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71162746|gb|EAO12472.1| Antitermination protein NusB [Xylella fastidiosa Dixon]
 gi|71729749|gb|EAO31850.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
 gi|167965771|gb|ACA12781.1| transcription termination factor [Xylella fastidiosa M12]
          Length = 157

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           +            ++     + A+      D +    +V   L     +D  L   L  +
Sbjct: 33  VYAWQISGGVAKQVIAHFAHEQAY---EVADLVYFEDLVEGVLTHCAELDEKLTPYLDRT 89

Query: 75  LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +       + +LR+   ++LY  DV    V++ A+  AKR   +++    VN +L R
Sbjct: 90  IEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRF-GSKYGHTYVNGVLDR 145


>gi|188526813|ref|YP_001909500.1| transcription antitermination protein NusB [Helicobacter pylori
           Shi470]
 gi|217033802|ref|ZP_03439227.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
 gi|254778739|ref|YP_003056844.1| transcription antitermination protein NusB [Helicobacter pylori
           B38]
 gi|238691960|sp|B2UW05|NUSB_HELPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188143053|gb|ACD47470.1| transcription antitermination protein NusB [Helicobacter pylori
           Shi470]
 gi|216943700|gb|EEC23143.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
 gi|254000650|emb|CAX28559.1| N utilization substance protein B homolog (Protein nusB),
           transcriptional antitermination factor [Helicobacter
           pylori B38]
 gi|261837458|gb|ACX97224.1| N utilization substance protein B/transcriptional antitermination
           factor [Helicobacter pylori 51]
 gi|297379224|gb|ADI34111.1| transcription antitermination factor NusB [Helicobacter pylori
           v225d]
 gi|308061306|gb|ADO03194.1| transcription antitermination protein NusB [Helicobacter pylori
           Cuz20]
 gi|308062871|gb|ADO04758.1| transcription antitermination protein NusB [Helicobacter pylori
           Sat464]
 gi|315585992|gb|ADU40373.1| transcription antitermination factor NusB [Helicobacter pylori 35A]
 gi|317008681|gb|ADU79261.1| transcription antitermination protein NusB [Helicobacter pylori
           India7]
 gi|317178310|dbj|BAJ56098.1| transcription antitermination protein NusB [Helicobacter pylori
           F30]
 gi|317181291|dbj|BAJ59075.1| transcription antitermination protein NusB [Helicobacter pylori
           F57]
 gi|332672789|gb|AEE69606.1| transcription antitermination factor NusB [Helicobacter pylori 83]
          Length = 138

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|158258138|dbj|BAF85042.1| unnamed protein product [Homo sapiens]
          Length = 335

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 75  ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLAPGLQPGDIVLDLCAA 134

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 135 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 194

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 195 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLRATKPGG 254

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 255 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 314

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   +RRL 
Sbjct: 315 VIPNLMANFGP-------MYFCKMRRLT 335


>gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB [Helicobacter pylori
           26695]
 gi|7387970|sp|O24853|NUSB_HELPY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|2313078|gb|AAD07074.1| predicted coding region HP0001 [Helicobacter pylori 26695]
          Length = 138

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|15611072|ref|NP_222723.1| transcription antitermination protein NusB [Helicobacter pylori
           J99]
 gi|7387981|sp|Q9ZN57|NUSB_HELPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|4154504|gb|AAD05585.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
          Length = 138

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|302343804|ref|YP_003808333.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
 gi|301640417|gb|ADK85739.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
          Length = 142

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     +R ++  +L  +          L +   + A     ++     R +V    +  
Sbjct: 1   MGDRSLSRELALKVLYQMEHGDQDAEAALTVFAENFAA---PEKLFAYTRQLVLGVEQNR 57

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117
            RID +L+ V     + R  +  + +LR++  +I      V   A +  A++ +KR  E+
Sbjct: 58  RRIDEMLNRVSRKWRVERMSWVDRNILRLACYEIYLAPQPVPPKAAISEALDLSKRYAED 117

Query: 118 RHFA 121
              +
Sbjct: 118 CSCS 121


>gi|153952373|ref|YP_001398575.1| transcription antitermination protein NusB [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|166215677|sp|A7H4Z5|NUSB_CAMJD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|152939819|gb|ABS44560.1| transcription antitermination factor NusB [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 132

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 12/133 (9%)

Query: 1   MKSGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M +    R     LL       +  + +  +LD +   +  +            + +  L
Sbjct: 1   MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN-------FTLNLYHGIL 53

Query: 58  RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
             L  ID  L+  L  + +    +  + +LR+   ++L+ +     V++ A+E AK    
Sbjct: 54  DNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTNTPSAIVINEAIELAKE-LA 112

Query: 117 NRHFAKLVNSILR 129
           N +  K +N +L 
Sbjct: 113 NDNSPKFMNGVLD 125


>gi|258405547|ref|YP_003198289.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692]
 gi|257797774|gb|ACV68711.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692]
          Length = 147

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 11/146 (7%)

Query: 1   MKSGMNA-----RLVSSHLLSCVMRKRISLT--CLLDLEYGD-SAFRLLSQRDQILVRAI 52
           M     +     R  +  +L  +  +        LL   +        + +        +
Sbjct: 1   MAKSTKSARRLGRQTAFQVLYSLNFQESHGNGLALLQRTFTHLIEQEEVGEAAADFAWEL 60

Query: 53  VNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110
           V         +D ++        + R       +LR+++ ++ +  D+     ++  VE 
Sbjct: 61  VQGVWENRDELDELISRHSQHWRVGRIAKIELSILRLALYEMYFRSDIPPKVAINEGVEL 120

Query: 111 AKRDKENRHFAKLVNSILRRVSREKI 136
           AK    +      VN IL   ++   
Sbjct: 121 AKEF-GDEQSRGFVNGILDAAAKACP 145


>gi|296875879|ref|ZP_06899940.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433120|gb|EFH18906.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis ATCC 15912]
          Length = 143

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 4/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           S    R  +   L  +      +         D       + D    +  +V    +   
Sbjct: 9   SRRELRERAFQALMALEYDGDIIEACRFAYLHDKDIAEDKEVDLPAFLMNLVTGVYQSKD 68

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           ++D  +   L    ++ R     + +LR+ + +I   D      V+ AVE AK    +  
Sbjct: 69  QLDQQIGQHLKAGWTVERLTLVEKNILRLGIYEITEFDTPQIVAVNEAVELAKAF-SDEI 127

Query: 120 FAKLVNSILRRV 131
            ++ VN +L + 
Sbjct: 128 SSRFVNGVLSQF 139


>gi|195437726|ref|XP_002066791.1| GK24670 [Drosophila willistoni]
 gi|194162876|gb|EDW77777.1| GK24670 [Drosophila willistoni]
          Length = 505

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRC 281
           ++ D  + +P           VLD CAAPGGK       +    +   DV + RL+KL+ 
Sbjct: 275 FLMDGGSILPPLFLQVQPGERVLDACAAPGGKSLLLLQTLHIDHLVCNDVQESRLKKLKH 334

Query: 282 NLD--------RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331
            +         R           DA +    + +D +LVD PC++     +++  ++   
Sbjct: 335 VMQEYLFDYKERWQGKRLIFNMGDARNLDEYESYDKILVDVPCTTDRHVLMQQDNNIFKP 394

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387
               + ++    Q  +L   +  ++PGG +V+S CSL    ++ VV   L+       I 
Sbjct: 395 TRIKERLRIPELQSGILANCLRLLRPGGSLVYSTCSLSPVQNDGVVHMALQKVFNDHGIT 454

Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411
             +  L+       D+     P+G
Sbjct: 455 TTVRDLSQQVALFADIFKFEQPKG 478


>gi|227510480|ref|ZP_03940529.1| transcription antitermination protein NusB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227513489|ref|ZP_03943538.1| transcription antitermination protein NusB [Lactobacillus buchneri
           ATCC 11577]
 gi|227524631|ref|ZP_03954680.1| transcription antitermination protein NusB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227083362|gb|EEI18674.1| transcription antitermination protein NusB [Lactobacillus buchneri
           ATCC 11577]
 gi|227088115|gb|EEI23427.1| transcription antitermination protein NusB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227190132|gb|EEI70199.1| transcription antitermination protein NusB [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 137

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R ++   L  +   + +          D  +     +    +  +    +     
Sbjct: 4   TRHQIREIAFQTLFALNANKQTNKENFFEVLTDGKYGDEYPK---YLDELTTGVVDHKEE 60

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           +D +++  L    S+ R   +   +L +++ ++L+  D+     ++ A+E AK+  ++R 
Sbjct: 61  LDNLIEKYLKSGWSINRIAKTDLIILEIALYEMLHVDDLPAKVSINEAIELAKKYSDDRS 120

Query: 120 FA 121
             
Sbjct: 121 RK 122


>gi|242309730|ref|ZP_04808885.1| transcription antitermination protein NusB [Helicobacter pullorum
           MIT 98-5489]
 gi|239523731|gb|EEQ63597.1| transcription antitermination protein NusB [Helicobacter pullorum
           MIT 98-5489]
          Length = 148

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 55/152 (36%), Gaps = 13/152 (8%)

Query: 1   MKSGMNARLVSSHLLSCV----MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M +  +AR V   LL        +       + +        + +    +    ++    
Sbjct: 1   MATRSHAREVVVQLLYAYGSGNEKIGKFADEIFEE-------QKIKNNQKEFATSLFEGV 53

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
           +  L  +D  +   L      +     + +LR+ V +I++  ++    ++ A+E AK   
Sbjct: 54  IANLEALDLRISHQLKDWDFSKIGDMEKAILRLGVYEIIFNHLSKAIAINEALELAKSF- 112

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISI 147
            N + AK +N +L  +++   +  Q       
Sbjct: 113 GNENSAKFINGVLDGIAKNLQDSSQTPHQPHQ 144


>gi|332977564|gb|EGK14334.1| N utilization substance protein B [Desmospora sp. 8437]
          Length = 148

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M      R  +   L             +  E          +        +V   +R +
Sbjct: 1   MSRRT-VREKALQTLYQNEINPDGADRSMKKEARSLHDEAGEEA-SAFFLRLVRTVIRNM 58

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
           PR+D V+   L     L R     + +LR++V ++LY  ++ + A ++ AVE AK     
Sbjct: 59  PRLDPVIQGYLKQDWTLSRLSPVDRSILRMAVCELLYEEEIPEGASLNEAVELAKTF-ST 117

Query: 118 RHFAKLVNSILRRV 131
              A+ +N +L  +
Sbjct: 118 EESARFINGVLGSM 131


>gi|307129902|ref|YP_003881918.1| transcription antitermination protein [Dickeya dadantii 3937]
 gi|306527431|gb|ADM97361.1| transcription antitermination protein [Dickeya dadantii 3937]
          Length = 139

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R ++        ++DA + 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKGVDITYFRELLAGVATQAEKLDAQMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR++V ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +    
Sbjct: 127 LDKAGPH 133


>gi|260753881|ref|YP_003226774.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553244|gb|ACV76190.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 157

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56
            +   ARL +   L     ++  L  LLD  +       +        +      IV   
Sbjct: 11  NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRGV 70

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
                 ID V+   L    SL R    ++Q+LR    ++L   DV    ++   ++ A  
Sbjct: 71  GTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVANA 130

Query: 114 DKENRHFAKLVNSILRR 130
              +R     VN +L  
Sbjct: 131 FY-DRQEKNFVNGLLDT 146


>gi|296136867|ref|YP_003644109.1| NusB antitermination factor [Thiomonas intermedia K12]
 gi|294341036|emb|CAZ89431.1| putative NusB antitermination factor [Thiomonas sp. 3As]
 gi|295796989|gb|ADG31779.1| NusB antitermination factor [Thiomonas intermedia K12]
          Length = 202

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 5/147 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R ++   +   +        +    +       L        +++++  L    
Sbjct: 9   SARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERYPTIKLDDD---HFQSLLHGALAEAG 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +DA++   +             LL +   ++  +LDV    V++ AVE  K       +
Sbjct: 66  PLDALIQPHIDRQTSELSPVEHALLLMGAFELQRHLDVPYRVVINEAVELGKVYGGTDGY 125

Query: 121 AKLVNSILRRVSREKIELLQRIAGISI 147
              VN +L R++ +  +     A  S 
Sbjct: 126 K-YVNGVLDRIAAQLRKTEVEAANQSH 151


>gi|254434713|ref|ZP_05048221.1| transcription antitermination factor NusB [Nitrosococcus oceani
           AFC27]
 gi|207091046|gb|EDZ68317.1| transcription antitermination factor NusB [Nitrosococcus oceani
           AFC27]
          Length = 136

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              L         +  +          + +   D    + ++    +    +D  L   L
Sbjct: 1   MQGLYQWQLMGQDVDKIDIEFIV----QDIRGIDHAYFQELLRGVPQRQGELDECLGPFL 56

Query: 72  ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              +         +LR+   ++L   ++    V++ A+E AKR     H  + VN IL +
Sbjct: 57  DRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRF-GAEHGHRYVNGILDK 115


>gi|238783631|ref|ZP_04627652.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970]
 gi|238715509|gb|EEQ07500.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970]
          Length = 138

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R +++        +DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PVLSRQLEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|238795564|ref|ZP_04639079.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969]
 gi|238720683|gb|EEQ12484.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969]
          Length = 138

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +      +     + D+E    + + +   D    R +++        +DA++ 
Sbjct: 11  ECAVQAIYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRQLEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|22537833|ref|NP_688684.1| transcription antitermination protein NusB [Streptococcus
           agalactiae 2603V/R]
 gi|25011777|ref|NP_736172.1| transcription antitermination protein NusB [Streptococcus
           agalactiae NEM316]
 gi|76787394|ref|YP_330307.1| transcription antitermination protein NusB [Streptococcus
           agalactiae A909]
 gi|76798712|ref|ZP_00780933.1| transcription antitermination factor NusB [Streptococcus agalactiae
           18RS21]
 gi|77406598|ref|ZP_00783645.1| transcription antitermination factor NusB [Streptococcus agalactiae
           H36B]
 gi|77409287|ref|ZP_00785993.1| transcription antitermination factor NusB [Streptococcus agalactiae
           COH1]
 gi|77412442|ref|ZP_00788747.1| transcription antitermination factor NusB [Streptococcus agalactiae
           CJB111]
 gi|77413939|ref|ZP_00790114.1| transcription antitermination factor NusB [Streptococcus agalactiae
           515]
 gi|54037925|sp|P65581|NUSB_STRA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041675|sp|P65580|NUSB_STRA3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390832|sp|Q3JZJ6|NUSB_STRA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|22534728|gb|AAN00557.1|AE014269_1 N utilization substance protein B [Streptococcus agalactiae
           2603V/R]
 gi|24413317|emb|CAD47396.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562451|gb|ABA45035.1| transcription antitermination factor NusB [Streptococcus agalactiae
           A909]
 gi|76585937|gb|EAO62474.1| transcription antitermination factor NusB [Streptococcus agalactiae
           18RS21]
 gi|77160024|gb|EAO71160.1| transcription antitermination factor NusB [Streptococcus agalactiae
           515]
 gi|77161506|gb|EAO72512.1| transcription antitermination factor NusB [Streptococcus agalactiae
           CJB111]
 gi|77172119|gb|EAO75282.1| transcription antitermination factor NusB [Streptococcus agalactiae
           COH1]
 gi|77174791|gb|EAO77613.1| transcription antitermination factor NusB [Streptococcus agalactiae
           H36B]
 gi|319745636|gb|EFV97936.1| transcription antitermination factor NusB [Streptococcus agalactiae
           ATCC 13813]
          Length = 144

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVTL 57
           S  + R  +   L  +      +       +    +      D++      +  +VN  +
Sbjct: 8   SRRDLRERAFQTLFSLETGGEFIDAA----HFAYGYDKTVSEDKVLEVPIFLLNLVNGVV 63

Query: 58  RFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
                +D ++   L    SL R     + LLR+ + +I Y D   D   ++  +E AK+ 
Sbjct: 64  DHKDELDTLISSHLKSGWSLERLTLVDKSLLRLGLYEIKYFDETPDRVALNEIIEIAKKY 123

Query: 115 KENRHFAKLVNSILRRV 131
             +   AK VN +L + 
Sbjct: 124 -SDETSAKFVNGLLSQF 139


>gi|261838874|gb|ACX98639.1| transcription antitermination protein NusB [Helicobacter pylori 52]
          Length = 138

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +           ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSILEEKKIKN---NQLAFALSLFNGVLEKI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|268680366|ref|YP_003304797.1| transcription antitermination factor NusB [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618397|gb|ACZ12762.1| transcription antitermination factor NusB [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 136

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +   +D  + +   R    + +     +       L
Sbjct: 1   MATRHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRN---QQKEFALGLYQGVKAHL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID  ++  L   +L       + +LR+   +ILY ++ +  V++ A+E AK+   N  
Sbjct: 58  SVIDEAINRHLKEWNLSEIGMLERAILRLGGYEILYSELDNAVVINEAIELAKKLC-NET 116

Query: 120 FAKLVNSILRRVSR 133
             K +N +L  + +
Sbjct: 117 SPKFINGVLDAICK 130


>gi|251796318|ref|YP_003011049.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
 gi|247543944|gb|ACT00963.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
          Length = 153

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 11/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-----FRLLSQRDQ--ILVRAIV 53
           MK  + AR ++   L  +    ++    +D+   ++           + DQ    VR +V
Sbjct: 1   MKRRL-AREIAVSSLYQLEMNEVTPMEAVDMLMEEARSENEIEAEFVENDQTDNYVRELV 59

Query: 54  NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
           N        ID  L   L    + R     +Q+LR++  +I Y  DV   A ++ A+E A
Sbjct: 60  NGVAENKAAIDERLQHYLTGWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIELA 119

Query: 112 KRDKENRHFAKLVNSILRR 130
           K         K VN +L +
Sbjct: 120 K-HFGTEESGKFVNGVLGK 137


>gi|187779509|ref|ZP_02995982.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC
           15579]
 gi|187773134|gb|EDU36936.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC
           15579]
          Length = 143

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 14/142 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLE-----------YGDSAFRLLSQRDQILVRA 51
           +   +R V+  LL        +L   L+               D     L   D   V+ 
Sbjct: 2   NRRKSREVAMRLLFQTTLNEENLEVALENLKDVRESEESAKEKDYESVDLKDVDIDYVKR 61

Query: 52  IVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109
           I+         ID  +   L +  + R       +LR+   ++ +  D+     V+ A+E
Sbjct: 62  IIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPSKVSVNEAIE 121

Query: 110 QAKRDKENRHFAKLVNSILRRV 131
            AK+    +  A  +N +L ++
Sbjct: 122 LAKKYSGEK-AATFINGVLGKM 142


>gi|319956407|ref|YP_004167670.1| nusb antitermination factor [Nitratifractor salsuginis DSM 16511]
 gi|319418811|gb|ADV45921.1| NusB antitermination factor [Nitratifractor salsuginis DSM 16511]
          Length = 143

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +    +        R    + +     +   T+  L
Sbjct: 1   MATRHQARRAVVGLLYAYDLGNDGIEKFSEEILESDKIRN---KQREFSMRLFKGTIENL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +ID  +   L      +     + +LR+   +IL        +++ AVE AK   + + 
Sbjct: 58  DKIDEEIQKHLESWDYSKIGKVEKAILRLGAYEILIEGTDRPIIINEAVELAKELADEKS 117


>gi|167534415|ref|XP_001748883.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772563|gb|EDQ86213.1| predicted protein [Monosiga brevicollis MX1]
          Length = 351

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 31/231 (13%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCN 282
           +++ D S+ +           +VLDLCAAPGGK   L         +  ++R   +    
Sbjct: 108 YYLMDPSSILAALALNVQPGDTVLDLCAAPGGKALILAEQLDGRGHIQANERASGRQSRL 167

Query: 283 LD--------RLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
                     R+      +  +D        K+ +  +LVDAPCSS   +    D L   
Sbjct: 168 QRVMIDYLPERIRHKGVRVTGLDGTRARALGKEQYSKILVDAPCSSDRHVLMDLDELAVW 227

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
               I  ++  Q +LL      +KPGG VV+S C+L   ++++VV+ +++ S   + +  
Sbjct: 228 SPTRIRANSKRQIQLLWAAAQALKPGGTVVYSTCALSDMENDDVVRTIIKRSGGTLSVDS 287

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF---FAVALRR 440
              +++         +  G+I   PD             GF   +   L +
Sbjct: 288 TCPSWFAEP------TECGFI-ALPDRS-----------GFGPLYFARLVK 320


>gi|320104116|ref|YP_004179707.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
 gi|319751398|gb|ADV63158.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
          Length = 177

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R +   +L  +          ++        R  S RD+   R ++    R    ID V+
Sbjct: 10  REIVLQVLYMLDHNTGLSQEEIEQFLAW-RLREPSWRDEA--RGLIEGVRRHRETIDQVI 66

Query: 68  DFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
             +  +  L R     + +LR+   ++LY LDV     +  AVE  KR   +   ++ VN
Sbjct: 67  SDLARNWRLDRMAAIDRNVLRLGTYEVLYRLDVPVAVAITEAVELVKRF-GSAQSSRFVN 125

Query: 126 SILRRVSR 133
            IL RV  
Sbjct: 126 GILGRVPH 133


>gi|149916259|ref|ZP_01904780.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b]
 gi|149809919|gb|EDM69770.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b]
          Length = 168

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEY-----GDSAFRLLSQRDQILVRAIVNVT 56
           K    AR  +   L  +   + ++  ++                + + D +L   ++   
Sbjct: 23  KMRSAARFYAVQALFQMEVSQQTVDAVIREFEDHRFGAHYDEGDMVEGDPVLFGQLMRDA 82

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
           + +   ID + D  L     + R   +L+ L R + A++   D     V+   V+ AK  
Sbjct: 83  VNWQASIDQMTDRALVAKWPIARIDPTLRALFRAAGAEMTQSDTPPKVVIMEFVDIAKSF 142

Query: 115 KENRHFAKLVNSILRRV 131
                 +  VN++L  +
Sbjct: 143 YPEGKESSFVNAVLDHM 159


>gi|162455551|ref|YP_001617918.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56']
 gi|189035908|sp|A9ET18|NUSB_SORC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|161166133|emb|CAN97438.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56']
          Length = 140

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R  +  +L  V     S   ++   + ++         +     +V      L
Sbjct: 1   MGARSTGREAALQMLFAVEAGGSSAPRVVATFWRETPG---DPEGRAYADEVVVGVAEDL 57

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
             +D  +     +  L R     + +LR+   +++   +V    ++D AVE AKR     
Sbjct: 58  AAVDEAIRKASTNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAKRYGSEE 117

Query: 119 HFA 121
             A
Sbjct: 118 SGA 120


>gi|50308649|ref|XP_454327.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643462|emb|CAG99414.1| KLLA0E08361p [Kluyveromyces lactis]
          Length = 491

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 136/461 (29%), Gaps = 83/461 (18%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDF---VLISSLPRKKYSL-QQLLRVSVAQILYLDVADYA 102
             + AIV+ T ++   +D ++     +      + K    +  +R+ V  +L        
Sbjct: 46  RHIYAIVSSTWQYREYLDKIIKKSGILEDVPKKKGKPLFNKDTIRLLVHDLLLSKSKRIQ 105

Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162
           +    ++      + R  A+L    ++       +L++   G  + P  +  R+     K
Sbjct: 106 MGKHPIKTFILKHQTRLKAELTKLKVKLKVTSLSQLIKTDDGEDVTPVRWI-RINPILVK 164

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFA 219
           ER   +           +       +W   +   +     I           I S   + 
Sbjct: 165 ERYDDVLAELNKKFPQRVN------SWKQIVPGSIYYDEYIPNLFGIHPGDKITSHEQYK 218

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTAL 269
            G   +QD ++  P  +    +   V+D CAAPG KT  +               K+ A 
Sbjct: 219 RGKIIIQDRASCFPAHILNPNSTDVVIDACAAPGNKTTHVAAHIFGDVDTKVDSVKIHAF 278

Query: 270 DVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRH 325
           +    R + L+  +          I   D          +     +VD  CS +G   R 
Sbjct: 279 EKDPERAKTLQMMVATAGCAKGVKIHVGDFTKLGKPELFQNVTGFIVDPSCSGSGIFGRK 338

Query: 326 PDVLWTRDT------------------------------DDIVKSACFQRKLLLQGISFV 355
                                                  + + K + FQ +++   +SF 
Sbjct: 339 AIDKVNLSKTGSSNTDEDQTSVEPVEQEKELFEKEQDLKNRLAKLSSFQYQIVKHAMSF- 397

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSS----------------PIPVELVPLNSAYWK 399
                + +S CS+  +++E VV  +L  S                P        +     
Sbjct: 398 PSAKKICYSTCSIHAEENERVVIDLLLDSKVKEWGWKVRKRTGVIPTWPRRGWTSEFEEV 457

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     EG IR  P           G  GFFAV   R
Sbjct: 458 FPKEEAKELAEGCIRALP--------KEDGGIGFFAVCFER 490


>gi|238787982|ref|ZP_04631778.1| N utilization substance protein B [Yersinia frederiksenii ATCC
           33641]
 gi|238723930|gb|EEQ15574.1| N utilization substance protein B [Yersinia frederiksenii ATCC
           33641]
          Length = 138

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R +++        +DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PVLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +++  
Sbjct: 127 LDKIAPM 133


>gi|320160865|ref|YP_004174089.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
 gi|319994718|dbj|BAJ63489.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
          Length = 155

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR V+   L  +         +L+    D+  +     D    R IV   L   
Sbjct: 1   MKLRTRARAVALEALYEIDLTNHLPGDVLEERIKDAKLQD-ELAD--FAREIVMGVLPIT 57

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            ++D  +        L +     + +LR+++ +            ++ AVE AK+   + 
Sbjct: 58  HQLDVQIAKHAPEWPLDQVAVIDRNILRIALWEFAVGQCTPVKVAINEAVELAKKY-GSD 116

Query: 119 HFAKLVNSILRR 130
             A+ VN +L  
Sbjct: 117 SSARFVNGVLGS 128


>gi|23336051|ref|ZP_00121280.1| COG0781: Transcription termination factor [Bifidobacterium longum
           DJO10A]
 gi|23464693|ref|NP_695296.1| NusB antitermination protein [Bifidobacterium longum NCC2705]
 gi|189438946|ref|YP_001954027.1| transcription termination factor [Bifidobacterium longum DJO10A]
 gi|227546799|ref|ZP_03976848.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239620779|ref|ZP_04663810.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|312132387|ref|YP_003999726.1| nusb [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691569|ref|YP_004221139.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|32171480|sp|Q8G817|NUSB_BIFLO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238692035|sp|B3DQ30|NUSB_BIFLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23325257|gb|AAN23932.1| NusB antitermination protein [Bifidobacterium longum NCC2705]
 gi|189427381|gb|ACD97529.1| Transcription termination factor [Bifidobacterium longum DJO10A]
 gi|227212761|gb|EEI80642.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239516355|gb|EEQ56222.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|291516175|emb|CBK69791.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum F8]
 gi|311772581|gb|ADQ02069.1| NusB [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456425|dbj|BAJ67047.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 190

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  + + L     K   +  LLD        +            IV       
Sbjct: 1   MA-RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD---YAIEIVKGVAEHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            +ID  LD       + R     + +LR++  +IL+  DV D   +D A+  AK   ++ 
Sbjct: 57  RQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAKTLCDDD 116

Query: 119 HFA 121
             A
Sbjct: 117 SPA 119


>gi|306843714|ref|ZP_07476314.1| transcription antitermination factor NusB [Brucella sp. BO1]
 gi|306276024|gb|EFM57733.1| transcription antitermination factor NusB [Brucella sp. BO1]
          Length = 171

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++         + +        D    RAIV   +    
Sbjct: 23  ARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D ++   L     L R   +L+ +LR    ++    DV    +V   V+ AK      
Sbjct: 83  KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141

Query: 119 HFAKLVNSILRR 130
              KLVN++L R
Sbjct: 142 DEPKLVNAVLDR 153


>gi|154498049|ref|ZP_02036427.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC
           29799]
 gi|150273039|gb|EDN00196.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 13/129 (10%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL-----------SQRDQILVRA 51
           +  NAR ++ HL   +     +   LLD     + F L+           + + +  +  
Sbjct: 49  TRTNAREIAVHLTFELSFTNQTADELLDTALTRATFALIGEEEPLYAEYPNAKQREYISE 108

Query: 52  IVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVE 109
           +V       P +D  +    +  +  R       ++RV++ +ILY+ DV + A ++ A+E
Sbjct: 109 LVRGVYFHCPELDDYISRYAIGWTFSRIPRIAVAVMRVAMYEILYMQDVPNAAAINEALE 168

Query: 110 QAKRDKENR 118
            AK  +   
Sbjct: 169 IAKGYETPE 177


>gi|110679100|ref|YP_682107.1| N utilization substance protein B-like protein, putative
           [Roseobacter denitrificans OCh 114]
 gi|109455216|gb|ABG31421.1| N utilization substance protein B-like protein, putative
           [Roseobacter denitrificans OCh 114]
          Length = 145

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   ARL +   L  +     ++  +               + +   D  L  A++  
Sbjct: 1   MKS--AARLYAVQALFQMEHSGQTIEAVRREFLDHRFGETYDGQEMLDGDVDLFGAVIEG 58

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +   ID + D  L     L R   +L+ L R + A++   D     V+   V+ A+ 
Sbjct: 59  AVNYQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAELNGKDTPPKVVISEYVDVARA 118

Query: 114 DKENRHFAKLVNSILRRV 131
             E+    KLVN +L  +
Sbjct: 119 FFEDGKEPKLVNGVLDHM 136


>gi|254458717|ref|ZP_05072141.1| transcription antitermination factor NusB [Campylobacterales
           bacterium GD 1]
 gi|207084483|gb|EDZ61771.1| transcription antitermination factor NusB [Campylobacterales
           bacterium GD 1]
          Length = 134

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  +AR+    LL        S+    D    +   R    + +    A+    +  L
Sbjct: 1   MATRHHARMAVVSLLYAYDLGNGSIADHTDEILEEKKIRN---KQKDFALALFEGVMENL 57

Query: 61  PRID-AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
              D A+++ +      R     +  LR++  +IL+ ++    V++ AVE  K       
Sbjct: 58  EACDKAIIEHLKEWDFERLGAIERATLRLATYEILFGELDSAVVINEAVEITKAF-GTEQ 116

Query: 120 FAKLVNSILR 129
             K +N +L 
Sbjct: 117 SPKFINGVLD 126


>gi|317481639|ref|ZP_07940674.1| transcription antitermination factor NusB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689608|ref|YP_004209342.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis 157F]
 gi|316916929|gb|EFV38316.1| transcription antitermination factor NusB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320460944|dbj|BAJ71564.1| transcription antitermination factor NusB [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 190

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  + + L     K   +  LLD        +            IV       
Sbjct: 1   MA-RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD---YAIEIVKGVAEHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +ID  LD       + R     + +LR++  +IL+  DV D   +D A+  AK   ++ 
Sbjct: 57  RQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDD 116

Query: 119 HFA 121
             A
Sbjct: 117 SPA 119


>gi|170717533|ref|YP_001784622.1| transcription antitermination protein NusB [Haemophilus somnus
           2336]
 gi|189035891|sp|B0UU23|NUSB_HAES2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168825662|gb|ACA31033.1| NusB antitermination factor [Haemophilus somnus 2336]
          Length = 144

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      + S    ++L +       +   D    R + + T+  + 
Sbjct: 9   SPRRRARECAVQNLYSWAISKNSPEE-IELNFIVDQDNEMKGVDMPYFRKLFHQTINHVE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            ID+ +   L             +LR++V ++ + LDV    V++ A+E AK        
Sbjct: 68  TIDSTMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAK-VFGAEES 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|291456359|ref|ZP_06595749.1| transcription antitermination factor NusB [Bifidobacterium breve
           DSM 20213]
 gi|291381636|gb|EFE89154.1| transcription antitermination factor NusB [Bifidobacterium breve
           DSM 20213]
          Length = 176

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  + + L     K   +  LLD        +            IV       
Sbjct: 1   MA-RSTARKRALNTLYEADEKGQDILSLLDERIAHPGAQTPLPD---YAIDIVKGVAEHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            +ID  LD       + R     + +LR++  +IL+ D V D   +D A+  AK   ++ 
Sbjct: 57  RQIDMTLDDHSTGWKVRRMGVVDRNILRIAAWEILFNDEVPDKVAIDEALALAKTLCDDD 116

Query: 119 HFA 121
             A
Sbjct: 117 SPA 119


>gi|262280550|ref|ZP_06058334.1| transcription termination L factor [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258328|gb|EEY77062.1| transcription termination L factor [Acinetobacter calcoaceticus
           RUH2202]
          Length = 149

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   +         +  +      ++A   +   D      ++   +    
Sbjct: 10  AAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQRD 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +DA+L  VL   L          LR+   ++  +L+V    V+D A+E AK        
Sbjct: 67  DLDALLIPVLDRELDALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADS 125

Query: 121 AKLVNSILRR 130
            K +N +L R
Sbjct: 126 HKYINGVLDR 135


>gi|222099929|ref|YP_002534497.1| N utilization substance protein B like protein [Thermotoga
           neapolitana DSM 4359]
 gi|221572319|gb|ACM23131.1| N utilization substance protein B like protein [Thermotoga
           neapolitana DSM 4359]
          Length = 135

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 8   RLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           RL     L     RK   L  +L+    +S      +  +  +R I       L  ID +
Sbjct: 2   RLAVFKALFQHEFRKDEDLEQILEEILDNSYDEKAKKDARRYIRNI----KEHLQTIDDL 57

Query: 67  LDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +   L   ++ R     + +LR+   ++LY  D+     ++ A+E AKR     +  K V
Sbjct: 58  ISRYLERWTIDRLSAVDRNILRLGTYELLYEKDIPIEVTINEAIEIAKRY-GTENSGKFV 116

Query: 125 NSILRR 130
           N IL R
Sbjct: 117 NGILDR 122


>gi|123443366|ref|YP_001007340.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332160727|ref|YP_004297304.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|166215729|sp|A1JNS2|NUSB_YERE8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122090327|emb|CAL13193.1| N utilization substance protein B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318604606|emb|CBY26104.1| transcription termination protein NusB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664957|gb|ADZ41601.1| transcription antitermination protein NusB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863853|emb|CBX73946.1| N utilization substance protein B homolog [Yersinia enterocolitica
           W22703]
          Length = 138

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R +++        +DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PVLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAADSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|296123835|ref|YP_003631613.1| transcription antitermination factor NusB [Planctomyces limnophilus
           DSM 3776]
 gi|296016175|gb|ADG69414.1| transcription antitermination factor NusB [Planctomyces limnophilus
           DSM 3776]
          Length = 163

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR V   +L     K ++     +         L  +        + +  + F 
Sbjct: 3   MSRRHKAREVVLQMLY---LKDLNPDVGFEQIRQMIQAELPDETLSRFAWGLFSGAMEFR 59

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           P +D  ++   +  SL R   + + +LR+   ++L  D     V+D A+E AK      +
Sbjct: 60  PALDKKIEEAAVNWSLSRMAPTDRNVLRLGAYELLQTDTPHRVVIDEALELAKSF-GGAN 118

Query: 120 FAKLVNSILRR 130
               VN IL R
Sbjct: 119 SGSFVNGILDR 129


>gi|197119391|ref|YP_002139818.1| transcription antitermination factor NusB [Geobacter bemidjiensis
           Bem]
 gi|238690857|sp|B5E853|NUSB_GEOBB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|197088751|gb|ACH40022.1| transcription antitermination factor NusB [Geobacter bemidjiensis
           Bem]
          Length = 145

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNV 55
           M +    R ++   L             L          +     ++ +       +VN 
Sbjct: 1   MTTRREGRELALQALYSKDLVLQDANTTLKRITESFSEGEEPTLSVNSKAYAFASELVNG 60

Query: 56  TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
            +  L  ID+ +       S+ R       +LR++V ++LY  D+     ++ A+E AK+
Sbjct: 61  VVSNLQAIDSRIAEKSKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVAKK 120

Query: 114 DKENRHFA 121
              +   +
Sbjct: 121 FGADDSAS 128


>gi|238926870|ref|ZP_04658630.1| transcription antitermination protein NusB [Selenomonas flueggei
           ATCC 43531]
 gi|238885402|gb|EEQ49040.1| transcription antitermination protein NusB [Selenomonas flueggei
           ATCC 43531]
          Length = 137

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 4/136 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  +AR  +   L            +   +    A   L+++D      +V  T    P 
Sbjct: 2   SRRHAREAALLTLFQREFDHDRPPIVAAGDLASDAVDGLTEKDLAYANRLVQGTCSVQPE 61

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRH 119
           IDA ++ +     L R     + L+R++  ++ Y    +     ++ AVE AK+   +  
Sbjct: 62  IDAAIECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKY-GSDD 120

Query: 120 FAKLVNSILRRVSREK 135
             + VN IL  + +  
Sbjct: 121 AGRYVNGILAALQKSM 136


>gi|312139563|ref|YP_004006899.1| transcriptional antiterminator factor nusb [Rhodococcus equi 103S]
 gi|325672553|ref|ZP_08152249.1| transcription antitermination protein NusB [Rhodococcus equi ATCC
           33707]
 gi|311888902|emb|CBH48215.1| transcriptional antiterminator factor NusB [Rhodococcus equi 103S]
 gi|325556430|gb|EGD26096.1| transcription antitermination protein NusB [Rhodococcus equi ATCC
           33707]
          Length = 167

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   AR  +   L     + +  +    +          ++         +V      L 
Sbjct: 10  ARHKARKRAVDFLFEAEARDVDPVDLADERSDLAGRDDSVAPV-APYTVTVVQGVAENLD 68

Query: 62  RIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           R+D V++  L   +L R     + +LR++V ++ +  DV     VD AVE AK       
Sbjct: 69  RLDQVIESHLQDWTLDRLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKE-LSTDD 127

Query: 120 FAKLVNSILRR 130
               VN +L +
Sbjct: 128 SPGFVNGVLGQ 138


>gi|126305772|ref|XP_001375367.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 4 protein
           [Monodelphis domestica]
          Length = 394

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 28/280 (10%)

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVS-LPGFAEGV----WWVQDASASIPVQLF 237
             ++ET                       I    P     +    +++ DAS+ +PV   
Sbjct: 123 PPELETLPSPRAPWPYSPNLHCYTFTRGDISRFHPARVSSLGLLDYYLMDASSLLPVLAL 182

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSK---RRLEKLRCNLDRLHLYAED 292
           G     +VLDLCA PGGKT  L+++G      A D+S    RRL+++  +     +    
Sbjct: 183 GVQPGDTVLDLCAGPGGKTLALLLTGCCRHLAANDISTSRTRRLKQVLHSYVPQDVSQVR 242

Query: 293 IIEMDAFDYCP--KKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
           +   D   +    +  +D VLVD PC++     +    ++       +       Q +LL
Sbjct: 243 VTSQDGRKWGDLERSTYDRVLVDVPCTTDRHSVLEEDNNIFKRSRKVERQMMPMLQVQLL 302

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVV---QKVLRSS---PIPVELVPLNSAYWKSID 402
           + G+   KPGG+ V+S C+L    +E VV     +L +       VE +      ++   
Sbjct: 303 VAGLLATKPGGVAVYSTCTLSHLQNEYVVGGAIDILANQYQIDAQVEELSSFRHLFQDTF 362

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                 P G + + P +              +   LRRL 
Sbjct: 363 SFFPSCPLGEL-VLPVLWANFGP-------MYFCRLRRLT 394


>gi|23501657|ref|NP_697784.1| transcription antitermination protein NusB [Brucella suis 1330]
 gi|148560649|ref|YP_001258749.1| transcription antitermination protein NusB [Brucella ovis ATCC
           25840]
 gi|161618737|ref|YP_001592624.1| transcription antitermination protein NusB [Brucella canis ATCC
           23365]
 gi|225627268|ref|ZP_03785305.1| transcription antitermination factor NusB [Brucella ceti str. Cudo]
 gi|254701543|ref|ZP_05163371.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|254704092|ref|ZP_05165920.1| transcription antitermination protein NusB [Brucella suis bv. 3
           str. 686]
 gi|254707007|ref|ZP_05168835.1| transcription antitermination protein NusB [Brucella pinnipedialis
           M163/99/10]
 gi|254709884|ref|ZP_05171695.1| transcription antitermination protein NusB [Brucella pinnipedialis
           B2/94]
 gi|254713885|ref|ZP_05175696.1| transcription antitermination protein NusB [Brucella ceti
           M644/93/1]
 gi|254717058|ref|ZP_05178869.1| transcription antitermination protein NusB [Brucella ceti M13/05/1]
 gi|256031377|ref|ZP_05444991.1| transcription antitermination protein NusB [Brucella pinnipedialis
           M292/94/1]
 gi|256060886|ref|ZP_05451046.1| transcription antitermination protein NusB [Brucella neotomae 5K33]
 gi|256159498|ref|ZP_05457266.1| transcription antitermination protein NusB [Brucella ceti
           M490/95/1]
 gi|256254784|ref|ZP_05460320.1| transcription antitermination protein NusB [Brucella ceti B1/94]
 gi|256369202|ref|YP_003106710.1| transcription antitermination protein NusB [Brucella microti CCM
           4915]
 gi|260168510|ref|ZP_05755321.1| transcription antitermination protein NusB [Brucella sp. F5/99]
 gi|260566660|ref|ZP_05837130.1| antitermination protein NusB [Brucella suis bv. 4 str. 40]
 gi|261218868|ref|ZP_05933149.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221964|ref|ZP_05936245.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314474|ref|ZP_05953671.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317426|ref|ZP_05956623.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321633|ref|ZP_05960830.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261324884|ref|ZP_05964081.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752093|ref|ZP_05995802.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|261754752|ref|ZP_05998461.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261757980|ref|ZP_06001689.1| antitermination protein NusB [Brucella sp. F5/99]
 gi|265988463|ref|ZP_06101020.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265997927|ref|ZP_06110484.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294852131|ref|ZP_06792804.1| transcription antitermination factor NusB [Brucella sp. NVSL
           07-0026]
 gi|32171662|sp|Q8G1E7|NUSB_BRUSU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215665|sp|A5VPV2|NUSB_BRUO2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035880|sp|A9MAF0|NUSB_BRUC2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23347577|gb|AAN29699.1| N utilization substance protein B [Brucella suis 1330]
 gi|148371906|gb|ABQ61885.1| transcription antitermination factor NusB [Brucella ovis ATCC
           25840]
 gi|161335548|gb|ABX61853.1| transcription antitermination factor NusB [Brucella canis ATCC
           23365]
 gi|225617273|gb|EEH14318.1| transcription antitermination factor NusB [Brucella ceti str. Cudo]
 gi|255999362|gb|ACU47761.1| transcription antitermination protein NusB [Brucella microti CCM
           4915]
 gi|260156178|gb|EEW91258.1| antitermination protein NusB [Brucella suis bv. 4 str. 40]
 gi|260920548|gb|EEX87201.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260923957|gb|EEX90525.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294323|gb|EEX97819.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296649|gb|EEY00146.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261300864|gb|EEY04361.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303500|gb|EEY06997.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261737964|gb|EEY25960.1| antitermination protein NusB [Brucella sp. F5/99]
 gi|261741846|gb|EEY29772.1| transcription antitermination protein NusB [Brucella suis bv. 5
           str. 513]
 gi|261744505|gb|EEY32431.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262552395|gb|EEZ08385.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264660660|gb|EEZ30921.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294820720|gb|EFG37719.1| transcription antitermination factor NusB [Brucella sp. NVSL
           07-0026]
          Length = 171

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++         + +        D    RAIV   +    
Sbjct: 23  ARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D ++   L     L R   +L+ +LR    ++    DV    +V   V+ AK      
Sbjct: 83  KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141

Query: 119 HFAKLVNSILRR 130
              KLVN++L R
Sbjct: 142 DEPKLVNAVLDR 153


>gi|225873914|ref|YP_002755373.1| transcription antitermination factor NusB [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793742|gb|ACO33832.1| transcription antitermination factor NusB [Acidobacterium
           capsulatum ATCC 51196]
          Length = 144

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               +R ++  +L      + +   +    +   A   +    +     +  V +     
Sbjct: 6   KRRKSRELAMQMLFQADVGKQTPDDVRKTFWE--AREEVEPDTRGFAEDLFRVAMNREEE 63

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
           ID +++    +  L R     + +LR+++A++L +       +++ A+E A+R      
Sbjct: 64  IDTLIEQHSANWKLSRMAAVDRNVLRMAIAELLGFPGTPAPIIINEALEIARRYSAPES 122


>gi|331697319|ref|YP_004333558.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190]
 gi|326952008|gb|AEA25705.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190]
          Length = 139

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M++   AR  +  +L     +      +L           +S         +V   +   
Sbjct: 1   MRARTKARKRALDILFESEARGDDPLEVLRNRRETDDAPPVSD----YAALLVQGVVEHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID +L       ++ R     + LLR+ V ++L++D + D   +  AVE A R     
Sbjct: 57  ERIDQLLAEHAEGWTVARMPAVDRTLLRIGVFELLWVDEIDDPVAITEAVELA-RTLSTD 115

Query: 119 HFAKLVNSILRR 130
              + +N +L R
Sbjct: 116 DSPRFLNGVLGR 127


>gi|153009852|ref|YP_001371067.1| transcription antitermination protein NusB [Ochrobactrum anthropi
           ATCC 49188]
 gi|166215706|sp|A6X1Y4|NUSB_OCHA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151561740|gb|ABS15238.1| NusB antitermination factor [Ochrobactrum anthropi ATCC 49188]
          Length = 168

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++         + +        D    RAIV   +    
Sbjct: 23  ARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVDEQL 82

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D ++   L     L R   +L+ +LR    ++    DV    +V   V+ AK      
Sbjct: 83  KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPTAVIVSEYVDIAKAFY-TE 141

Query: 119 HFAKLVNSILRR 130
              KLVN++L R
Sbjct: 142 DEPKLVNAVLDR 153


>gi|152993501|ref|YP_001359222.1| transcription antitermination protein NusB [Sulfurovum sp. NBC37-1]
 gi|166215724|sp|A6QBK6|NUSB_SULNB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151425362|dbj|BAF72865.1| transcription antitermination factor NusB [Sulfurovum sp. NBC37-1]
          Length = 130

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL        ++    D    +   R    + +     + + T+  L
Sbjct: 1   MATRHQARTAVVGLLYAYDLGNENIAKFSDEILEEDKIRN---KQRDFSHDLFDGTIENL 57

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +DA ++  L            + +LR+   +IL        +++ AVE AK   + + 
Sbjct: 58  EMLDAEIEKHLTDWDYDAIGRVEKAILRLGAYEILVAKTDRAIIINEAVELAKSLADEKS 117


>gi|15642265|ref|NP_231898.1| transcription antitermination protein NusB [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121586175|ref|ZP_01675966.1| N utilization substance protein B [Vibrio cholerae 2740-80]
 gi|121729760|ref|ZP_01682199.1| N utilization substance protein B [Vibrio cholerae V52]
 gi|147673228|ref|YP_001217781.1| transcription antitermination protein NusB [Vibrio cholerae O395]
 gi|153217373|ref|ZP_01951124.1| N utilization substance protein B [Vibrio cholerae 1587]
 gi|153803017|ref|ZP_01957603.1| N utilization substance protein B [Vibrio cholerae MZO-3]
 gi|153824256|ref|ZP_01976923.1| N utilization substance protein B [Vibrio cholerae B33]
 gi|153828248|ref|ZP_01980915.1| N utilization substance protein B [Vibrio cholerae 623-39]
 gi|227082391|ref|YP_002810942.1| N utilization substance protein B [Vibrio cholerae M66-2]
 gi|229507660|ref|ZP_04397165.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
 gi|229512145|ref|ZP_04401624.1| transcription termination protein NusB [Vibrio cholerae B33]
 gi|229513908|ref|ZP_04403370.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
 gi|229519280|ref|ZP_04408723.1| transcription termination protein NusB [Vibrio cholerae RC9]
 gi|229522212|ref|ZP_04411629.1| transcription termination protein NusB [Vibrio cholerae TM
           11079-80]
 gi|229528732|ref|ZP_04418122.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
 gi|229607164|ref|YP_002877812.1| transcription antitermination protein NusB [Vibrio cholerae
           MJ-1236]
 gi|254286062|ref|ZP_04961023.1| N utilization substance protein B [Vibrio cholerae AM-19226]
 gi|254849396|ref|ZP_05238746.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
 gi|255747039|ref|ZP_05420984.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
 gi|262161417|ref|ZP_06030527.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
 gi|262168266|ref|ZP_06035963.1| transcription termination protein NusB [Vibrio cholerae RC27]
 gi|262190236|ref|ZP_06048510.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
 gi|297580910|ref|ZP_06942835.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
 gi|298500359|ref|ZP_07010164.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
 gi|22095970|sp|Q9KPU5|NUSB_VIBCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|172047603|sp|A5F5Z6|NUSB_VIBC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772665|sp|C3LQ39|NUSB_VIBCM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9656829|gb|AAF95411.1| N utilization substance protein B [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549587|gb|EAX59611.1| N utilization substance protein B [Vibrio cholerae 2740-80]
 gi|121628511|gb|EAX60997.1| N utilization substance protein B [Vibrio cholerae V52]
 gi|124113619|gb|EAY32439.1| N utilization substance protein B [Vibrio cholerae 1587]
 gi|124121460|gb|EAY40203.1| N utilization substance protein B [Vibrio cholerae MZO-3]
 gi|126518222|gb|EAZ75447.1| N utilization substance protein B [Vibrio cholerae B33]
 gi|146315111|gb|ABQ19650.1| N utilization substance protein B [Vibrio cholerae O395]
 gi|148876337|gb|EDL74472.1| N utilization substance protein B [Vibrio cholerae 623-39]
 gi|150423972|gb|EDN15912.1| N utilization substance protein B [Vibrio cholerae AM-19226]
 gi|227010279|gb|ACP06491.1| N utilization substance protein B [Vibrio cholerae M66-2]
 gi|227014163|gb|ACP10373.1| N utilization substance protein B [Vibrio cholerae O395]
 gi|229332506|gb|EEN97992.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
 gi|229341137|gb|EEO06142.1| transcription termination protein NusB [Vibrio cholerae TM
           11079-80]
 gi|229343969|gb|EEO08944.1| transcription termination protein NusB [Vibrio cholerae RC9]
 gi|229349089|gb|EEO14046.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
 gi|229352110|gb|EEO17051.1| transcription termination protein NusB [Vibrio cholerae B33]
 gi|229355165|gb|EEO20086.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
 gi|229369819|gb|ACQ60242.1| transcription termination protein NusB [Vibrio cholerae MJ-1236]
 gi|254845101|gb|EET23515.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
 gi|255735441|gb|EET90841.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
 gi|262023158|gb|EEY41862.1| transcription termination protein NusB [Vibrio cholerae RC27]
 gi|262028728|gb|EEY47382.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
 gi|262033881|gb|EEY52347.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
 gi|297534736|gb|EFH73572.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
 gi|297541052|gb|EFH77106.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
 gi|327484782|gb|AEA79189.1| Transcription termination protein NusB [Vibrio cholerae LMA3894-4]
          Length = 156

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  + +       +     R           D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            ++   +     +D+ L   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|71033341|ref|XP_766312.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353269|gb|EAN34029.1| hypothetical protein TP01_0791 [Theileria parva]
          Length = 403

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 17/204 (8%)

Query: 251 APGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL---------HLYAEDIIEMDAFDY 301
                        + +   +  K R ++L     R          H+   +    DA  +
Sbjct: 204 NINKSMLSEKHGESLLVCNEAVKSRYKRLIETSKRFIPDKFISGKHIQFVNYDATDANKF 263

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD +L+DAPCSS   +        +     I +++  Q KLL   IS +K GG +
Sbjct: 264 QRFGKFDKILIDAPCSSERHLIHKNL---SWSVKSIKENSKRQLKLLQTAISLLKSGGTI 320

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM-L 420
           ++  C+LD  ++E V+  +L++      +         ++     L    + +  P+   
Sbjct: 321 LYCTCALDPIENEMVINTILKAYDDMKHVEISYKDLINNVTSGKNLGSMDYNKFKPEKRT 380

Query: 421 EKIDGVSSGMDGF---FAVALRRL 441
                +    D F   +   L++L
Sbjct: 381 YGCSIMPDKSD-FGPLYIAKLQKL 403


>gi|50294476|ref|XP_449649.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528963|emb|CAG62625.1| unnamed protein product [Candida glabrata]
          Length = 492

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 93/286 (32%), Gaps = 54/286 (18%)

Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---- 262
            + + I S   + +G   +QD ++  P  +     +  V+D C+APG KT  +       
Sbjct: 208 HISDKITSHELYKQGKIIIQDRASCFPAHILNPSADDVVIDACSAPGNKTTHVAAHIFGD 267

Query: 263 -------GAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFD---AVL 311
                    ++ A +    R + L+  +     +   D+   D         +      +
Sbjct: 268 PENPRNDNVQIYAFEKDPERAQILQKMIKTAGCHKNIDVNVGDFTQIATPSKYSDVTGFI 327

Query: 312 VDAPCSSTGTIRR------HPDVLWTRDTDDIV-------------------KSACFQRK 346
           +D  CS +G   R      +     + D                        K A FQ +
Sbjct: 328 LDPSCSGSGIFGRKSVDILNNHGKKSNDEVPDENDAEETTDSKNEQLKERLSKLASFQFQ 387

Query: 347 LLLQGISFVKPGGI-VVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPLNSAYWKS 400
           ++   +SF  P    +V+S CS+  +++E VV  +L     +S    V    L    W  
Sbjct: 388 IVRHAMSF--PNAKKIVYSTCSIHAEENERVVIDLLLDKKVQSWGWRVAKKELVLPTWYR 445

Query: 401 IDMAMALSP------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          E   +   D   +      G  GFFAV   R
Sbjct: 446 RGFKEEFQEVFTDKTEQECQELADGCVRALPKEDGGIGFFAVCFVR 491


>gi|124511684|ref|XP_001348975.1| methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23498743|emb|CAD50813.1| methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 1193

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 46/183 (25%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           KK FD++L D PCS  GT+R+  +V    + ++       Q  +L + I   K  G +V+
Sbjct: 422 KKNFDSILCDVPCSGDGTLRKDRNVWINWNPNNAYNLFQMQVNILKRSIELTKENGYIVY 481

Query: 364 SNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWKSIDMAMALSPEG---------- 411
           S CSL+  ++E V+ ++     +   ++L+   +     ++   A+              
Sbjct: 482 STCSLNPIENEAVICEIFNSVENLDCLKLINFQNELLTKLNYEKAVKQWKVVMDDIWFDT 541

Query: 412 ------WIR-----------------ITP-----------DMLEKIDGVSSGMDGFFAVA 437
                 +++                 + P           +  ++         GFF   
Sbjct: 542 YEQYCSYLQNKESGKYKKIYEKIQEGMFPPCEEFINSINLNYAKRFFPHHYNAGGFFIAV 601

Query: 438 LRR 440
           +++
Sbjct: 602 IQK 604


>gi|258620990|ref|ZP_05716024.1| N utilization substance protein B [Vibrio mimicus VM573]
 gi|261211383|ref|ZP_05925671.1| transcription termination protein NusB [Vibrio sp. RC341]
 gi|262170766|ref|ZP_06038444.1| transcription termination protein NusB [Vibrio mimicus MB-451]
 gi|262404600|ref|ZP_06081155.1| transcription termination protein NusB [Vibrio sp. RC586]
 gi|258586378|gb|EEW11093.1| N utilization substance protein B [Vibrio mimicus VM573]
 gi|260839338|gb|EEX65964.1| transcription termination protein NusB [Vibrio sp. RC341]
 gi|261891842|gb|EEY37828.1| transcription termination protein NusB [Vibrio mimicus MB-451]
 gi|262349632|gb|EEY98770.1| transcription termination protein NusB [Vibrio sp. RC586]
          Length = 156

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  + +       +     R           D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            ++   +     +D+ L   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLAGVVLNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|91225065|ref|ZP_01260287.1| transcription antitermination protein NusB [Vibrio alginolyticus
           12G01]
 gi|262395030|ref|YP_003286884.1| transcription termination protein NusB [Vibrio sp. Ex25]
 gi|269965074|ref|ZP_06179239.1| N utilization substance protein B [Vibrio alginolyticus 40B]
 gi|91190008|gb|EAS76279.1| transcription antitermination protein NusB [Vibrio alginolyticus
           12G01]
 gi|262338624|gb|ACY52419.1| transcription termination protein NusB [Vibrio sp. Ex25]
 gi|269830377|gb|EEZ84602.1| N utilization substance protein B [Vibrio alginolyticus 40B]
          Length = 155

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50
            +  NAR  +   +      + ++  + +       +               + D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKENVAKIEEQFLSGDKYDEEELHASEPALAAPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            +++  +     +D+ +   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  ELLSGVVLSHAELDSKIRPYISRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|320529119|ref|ZP_08030211.1| transcription antitermination factor NusB [Selenomonas artemidis
           F0399]
 gi|320138749|gb|EFW30639.1| transcription antitermination factor NusB [Selenomonas artemidis
           F0399]
          Length = 137

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 4/134 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  +AR  +   L  +       +     E    A   L ++D    + +V  T   +  
Sbjct: 2   SRRHAREAALLTLFQMDFSANEASLYDVSEIAAGAVEGLKEKDLPYAQGLVRGTRAAIGE 61

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRH 119
           IDA +        L R     + L+R++  ++ Y    +     ++ AVE AK+      
Sbjct: 62  IDAAIARSAKEWKLERMPGVDRNLIRMAFYEMYYQEERIDPGTAINEAVELAKKY-GAED 120

Query: 120 FAKLVNSILRRVSR 133
             + VN IL  + +
Sbjct: 121 AGRYVNGILSAMQK 134


>gi|220927277|ref|YP_002502579.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060]
 gi|219951884|gb|ACL62276.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060]
          Length = 156

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 11/140 (7%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIV 53
           MK      ARL     L  +      +   L         +++        +    R ++
Sbjct: 1   MKPAERSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIEHPPAETAFFRDVL 60

Query: 54  NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQ 110
              +     ID  LD  L     L R +  L+ +LR    ++++  DV     +   V+ 
Sbjct: 61  RGAVEEQRVIDQRLDGALSAGWPLRRVEAVLRAILRAGAYEVIFRKDVPVRVAISEYVDV 120

Query: 111 AKRDKENRHFAKLVNSILRR 130
           A           LVN++L +
Sbjct: 121 AHSFYGGDE-PGLVNAVLDK 139


>gi|303245564|ref|ZP_07331847.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ]
 gi|302492827|gb|EFL52692.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ]
          Length = 177

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRF 59
           S   AR  +   L  ++ +  +    L   +      +    D   Q     +V+     
Sbjct: 30  SRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVAEGEDGSGQEFAWELVSGVWTN 89

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              +DA +     +  L R       +LR++V +ILY  D+     ++ A+E AKR   +
Sbjct: 90  QRELDAHIVRFSKNWKLSRIAKVELTILRLAVYEILYRSDIPLRVALNEAIELAKRY-GD 148

Query: 118 RHFAKLVNSILR 129
            +    +N IL 
Sbjct: 149 ENSRNFINGILD 160


>gi|227530526|ref|ZP_03960575.1| transcription antitermination protein NusB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349532|gb|EEJ39823.1| transcription antitermination protein NusB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 136

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--ILVRAIVNVTLR 58
           M +    R  +  +L     K+ +    L   Y        S  D+    ++ +V     
Sbjct: 2   MPNRHAIREEAFQILFA---KQSNPDATLTDIYESLP----SHADKIPAYLQTLVEGVSE 54

Query: 59  FLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
              ++D  +  +L S   + R   +   +LR+++ +I ++D V     ++ A+E AK   
Sbjct: 55  HQEKLDEQITQLLASGWEINRLAQTDLVILRLALYEIQFVDEVPTVVAINEALELAKTYS 114

Query: 116 ENRHFA 121
            ++   
Sbjct: 115 NDKSRK 120


>gi|259909279|ref|YP_002649635.1| transcription antitermination protein NusB [Erwinia pyrifoliae
           Ep1/96]
 gi|292487447|ref|YP_003530319.1| transcription antitermination protein NusB [Erwinia amylovora
           CFBP1430]
 gi|292898689|ref|YP_003538058.1| N utilization substance protein B [Erwinia amylovora ATCC 49946]
 gi|224964901|emb|CAX56424.1| N utilization substance protein B [Erwinia pyrifoliae Ep1/96]
 gi|283479334|emb|CAY75250.1| transcription antitermination protein NusB [Erwinia pyrifoliae DSM
           12163]
 gi|291198537|emb|CBJ45645.1| N utilization substance protein B [Erwinia amylovora ATCC 49946]
 gi|291552866|emb|CBA19911.1| transcription antitermination protein NusB [Erwinia amylovora
           CFBP1430]
 gi|310766819|gb|ADP11769.1| transcription antitermination protein NusB [Erwinia sp. Ejp617]
 gi|312171550|emb|CBX79808.1| transcription antitermination protein NusB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 139

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D    R +V         +D ++ 
Sbjct: 11  ECAVQALYSWQISK---NDIADVEYQFLAEQDVKDVDITYFRELVGGVATHSAYLDDLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PFLSRQLEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + + +    
Sbjct: 127 LDKAAPQIRPN 137


>gi|187917985|ref|YP_001883548.1| transcription antitermination protein NusB [Borrelia hermsii DAH]
 gi|119860833|gb|AAX16628.1| N utilization substance protein B [Borrelia hermsii DAH]
          Length = 146

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 4/138 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+++   +  +     +   + D+   +     L +  ++    +VN T   L
Sbjct: 3   MNLRHKARVLAFQKIYSIDVNCKAKDNIYDIFGLEDHGVDLEEDLKLFYSVLVNGTCDNL 62

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117
             ID ++  + L   L R       +LRVSV  + +  LDV    ++D A+  AK+   +
Sbjct: 63  ESIDKLISDISLNWRLDRMDKVDLAILRVSVYSLKFQNLDVPKRVIIDEAILIAKKY-GS 121

Query: 118 RHFAKLVNSILRRVSREK 135
           ++  K VN IL  + ++ 
Sbjct: 122 KNSYKFVNGILDALLKDM 139


>gi|323210797|gb|EFZ95672.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
          Length = 241

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 11/84 (13%)

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S C+L++Q++E V   +  +    VE +PL   +    D   AL+PEG++ + P
Sbjct: 1   GGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFP 57

Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441
            + +          GFF   LR++
Sbjct: 58  QIYDCE--------GFFVARLRKM 73


>gi|254169079|ref|ZP_04875916.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
 gi|197621918|gb|EDY34496.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
          Length = 355

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 106/302 (35%), Gaps = 40/302 (13%)

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL 205
           P   +  L     +       +         L V     D +    +L    +       
Sbjct: 83  PHHIRNSLSLKLAEVTSREFIEIINREPDTVLCVNLAKIDRDKAIEELEREGIDAEEFIP 142

Query: 206 KELPESIVS---LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI-- 260
           +   ++            G+  VQD+S+ I  +L        VLD CA  GGK+  +   
Sbjct: 143 ESAIKADSKARYSSLIKNGLAIVQDSSSQIIAKLTS-SLGEEVLDYCAGSGGKSLAMHAL 201

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320
               K+   D+++R+L+ L     +        + +  F   P   F  VLVDAPCS  G
Sbjct: 202 NPNLKIHTYDINERKLKSLENRAKKWG------MNVHIFYDKPSGEFPVVLVDAPCSGVG 255

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
              R+P+  +    +D  K A  Q ++L +    VK  G +V+  CS    ++E ++ + 
Sbjct: 256 AAARNPEAKYR---EDFEKFAKMQMEILNEAKENVKSNGYLVYVVCSYTPWETENLIGEF 312

Query: 381 LRSSPIPV--ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           L  +P  +  E+      Y K  +    +                       D F+   L
Sbjct: 313 LNKAPYFIPQEIKCEYERYIKKGNYGAYILA--------------------GDIFYISVL 352

Query: 439 RR 440
           RR
Sbjct: 353 RR 354



 Score = 39.5 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 17/97 (17%)

Query: 9  LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           ++  ++   MRK      + D+         LS  ++  V  IV+  +R+    D +++
Sbjct: 4  KIAVRVIRKWMRKGNMARAMRDIL----PRSGLSFEEREQVARIVHDVVRYKLYYDYIME 59

Query: 69 FV-------------LISSLPRKKYSLQQLLRVSVAQ 92
                         L        + ++  L + +A+
Sbjct: 60 KRGMKKNAENYVKLSLKKPKVNAPHHIRNSLSLKLAE 96


>gi|171740948|ref|ZP_02916755.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC
           27678]
 gi|306823314|ref|ZP_07456689.1| transcription antitermination factor NusB [Bifidobacterium dentium
           ATCC 27679]
 gi|309802656|ref|ZP_07696760.1| transcription antitermination factor NusB [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276562|gb|EDT44223.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC
           27678]
 gi|304553021|gb|EFM40933.1| transcription antitermination factor NusB [Bifidobacterium dentium
           ATCC 27679]
 gi|308220720|gb|EFO77028.1| transcription antitermination factor NusB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 147

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M     AR  + + L     K    L+ L +      A   L          IV      
Sbjct: 1   MA-RSTARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPD----YAIEIVRGVAEN 55

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
           L RID+VLD       + R     + +LR++V +I++  DV +   +D A+  AK   ++
Sbjct: 56  LYRIDSVLDEHSTGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAKTLCDD 115

Query: 118 RHFA 121
              A
Sbjct: 116 DSPA 119


>gi|73540472|ref|YP_294992.1| transcription antitermination protein NusB [Ralstonia eutropha
           JMP134]
 gi|119390803|sp|Q474N5|NUSB_RALEJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|72117885|gb|AAZ60148.1| NusB antitermination factor [Ralstonia eutropha JMP134]
          Length = 167

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R ++   L   +  R     +  ++      +  ++ D     A++N  +R   
Sbjct: 28  SARRRSRELALQGLYQWLLNR---NDIGAIQAHLHDAQGFNKADSEHFDALLNGAVREEA 84

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           R+ A  +  L   +       +  L V   ++++  D+    V++ AVE  K       +
Sbjct: 85  RLTAAFEPFLDRKVEELSPVERAALLVGSYELVHCVDIPYKVVINEAVELTKTFGGVEGY 144

Query: 121 A 121
            
Sbjct: 145 K 145


>gi|71416373|ref|XP_810221.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874720|gb|EAN88370.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 238

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 24/227 (10%)

Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRC 281
             D ++++ V+         VLD+CAA G  +  +         +TA + +  R  +LR 
Sbjct: 1   PLDYASALVVEQLEVGAFDRVLDVCAASGRNSIGIAQFLSADGALTANEPNHERSARLRR 60

Query: 282 NLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSST-GTIRRHPDVLWT---RDT 334
           N+            I + +A  +    ++  VLVDAPCS+    ++ +     +      
Sbjct: 61  NIREYIPSNYVPVTITQRNAETWYAPSMYHRVLVDAPCSAERYLLQHNGGAPVSPKIWTE 120

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
              ++ +     LLL+ +   +PGG VV+S  SL   +++ VV+  LR +   VE+ P  
Sbjct: 121 QTSLELSRRGCVLLLRALETCRPGGRVVYSTRSLSPLENDGVVEDALRRTRCQVEVHPTT 180

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                       +       + PD       +       F   + ++
Sbjct: 181 LRNMGEKTRYGHI-------VLPDTAGGFGPL-------FCCVIHKV 213


>gi|310642666|ref|YP_003947424.1| transcription antitermination factor nusb [Paenibacillus polymyxa
           SC2]
 gi|309247616|gb|ADO57183.1| Transcription antitermination factor NusB [Paenibacillus polymyxa
           SC2]
          Length = 149

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 11/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL-------SQRDQILVRAIV 53
           MK  + AR ++   +  +    +     +D+   ++A           ++  +  V   V
Sbjct: 1   MKRRL-ARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEENEAEVVIKNAEVLRAYVLEHV 59

Query: 54  NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
             T      ID +L   L    + R     +Q+LR++V ++++  DV     V+ A+E +
Sbjct: 60  RGTWEHKEAIDGLLADYLKGWQISRLSRVDRQILRLAVYEMIFREDVPAKVAVNEAIELS 119

Query: 112 KRDKENRHFAKLVNSILRR 130
           K         K VN +L R
Sbjct: 120 K-HFGTEESGKFVNGVLGR 137


>gi|118573083|sp|Q3KNT7|NSN5B_HUMAN RecName: Full=Putative NOL1/NOP2/Sun domain family member 5B;
           AltName: Full=Williams-Beuren syndrome chromosomal
           region 20B protein
 gi|76825358|gb|AAI07113.1| NSUN5B protein [Homo sapiens]
          Length = 163

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 20/168 (11%)

Query: 285 RLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIV 338
            + +   ++ E D     P          VL+D  CS +G   R        T     + 
Sbjct: 7   WVGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLEDPGAGTPSPVRLH 66

Query: 339 KSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
             A FQ++ L   ++F  ++    +V+S CSL ++++E++V   L+ +P    L P   A
Sbjct: 67  ALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVPDALQQNPGAFRLAPALPA 123

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                 ++     E  +R +P              GFF   + R+  P
Sbjct: 124 RPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 162


>gi|296454538|ref|YP_003661681.1| NusB antitermination factor [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183970|gb|ADH00852.1| NusB antitermination factor [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 187

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  + + L     K   +  LLD        +            IV       
Sbjct: 1   MA-RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD---YAIEIVKGVAEHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +ID  LD       + R     + +LR++  +IL+  DV D   +D A+  AK   ++ 
Sbjct: 57  RQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDD 116

Query: 119 HFA 121
             A
Sbjct: 117 SPA 119


>gi|262274775|ref|ZP_06052586.1| transcription termination protein NusB [Grimontia hollisae CIP
           101886]
 gi|262221338|gb|EEY72652.1| transcription termination protein NusB [Grimontia hollisae CIP
           101886]
          Length = 151

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 15/144 (10%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL-----------SQRDQI 47
           MK     NAR  +   +      + ++  +         +               + D  
Sbjct: 1   MKPAARRNARHFALQAIYSWQLTKDNVADIEAQFLAADNYEEEEHQAEEPRLRQPETDVE 60

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDL 106
             R +++  +     +D+ +   L   L         +LR+S+ ++    DV    V++ 
Sbjct: 61  YFRDLLSGVVLNYQELDSKMRPYLSRPLQDLDEMEHAILRLSMYELCKREDVPYKVVINE 120

Query: 107 AVEQAKRDKENRHFAKLVNSILRR 130
           A+E AKR        K VN +L +
Sbjct: 121 AIELAKRF-GAEDSHKFVNGVLDK 143


>gi|282850877|ref|ZP_06260251.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282557829|gb|EFB63417.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 87

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 6  NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
          NAR V+   L  V  ++      L+ E        L   D+ L   IV  T+++   ++ 
Sbjct: 3  NARTVALETLIKVFNQKSYSNIALNNELVKH---ELKPADKALATRIVYGTIQYKIFLEY 59

Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILY 95
           L  ++ + L      L  LL +S  Q  +
Sbjct: 60 QLKPLIKTKLR--DKFLMPLLLMSAYQYFF 87


>gi|159478403|ref|XP_001697292.1| hypothetical protein CHLREDRAFT_176590 [Chlamydomonas reinhardtii]
 gi|158274450|gb|EDP00232.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 237

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            +    AVL+D PCS+ G     P ++ +     +   A +QR LL+  ++ + PGG ++
Sbjct: 117 DEGPEAAVLLDPPCSALGL---RPRLMHSWSLAQLRALAAYQRSLLVTAVAALAPGGTLL 173

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-KSIDMAMALSPEGWI 413
           +  C++  Q++E  V   L      ++L P         +  A   + E W+
Sbjct: 174 YCTCTISPQENEANVAWALDRYAGALQLEPAAPLLGLPGLTGADPHTGERWL 225


>gi|72161498|ref|YP_289155.1| transcription antitermination protein NusB [Thermobifida fusca YX]
 gi|119390842|sp|Q47QY5|NUSB_THEFY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71915230|gb|AAZ55132.1| NusB antitermination factor [Thermobifida fusca YX]
          Length = 142

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR+ +  +L     + + ++ +++     +   +           +         R
Sbjct: 9   SRHKARVRAVEILYEAEVRGVPVSEVIERRRAQTEPPINE-----FTEQLATRVDEHRAR 63

Query: 63  IDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           ID +L+   +  +L R     + +LR+ V ++L+  D+ D   +  AV  AK    +  
Sbjct: 64  IDELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDES 122


>gi|239831595|ref|ZP_04679924.1| transcription antitermination factor NusB [Ochrobactrum intermedium
           LMG 3301]
 gi|239823862|gb|EEQ95430.1| transcription antitermination factor NusB [Ochrobactrum intermedium
           LMG 3301]
          Length = 168

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 14/142 (9%)

Query: 2   KSGMN-----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRA 51
              M      ARL +   L  +      +  ++         + +        D    RA
Sbjct: 13  APRMANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDGTQYLDADPQWFRA 72

Query: 52  IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAV 108
           IV   +    ++D ++   L     L R   +L+ +LR    ++    DV    +V   V
Sbjct: 73  IVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPTAVIVSEYV 132

Query: 109 EQAKRDKENRHFAKLVNSILRR 130
           + AK         KLVN++L R
Sbjct: 133 DIAKAFY-TEEEPKLVNAVLDR 153


>gi|238765184|ref|ZP_04626116.1| N utilization substance protein B [Yersinia kristensenii ATCC
           33638]
 gi|238696618|gb|EEP89403.1| N utilization substance protein B [Yersinia kristensenii ATCC
           33638]
          Length = 138

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R +++        +DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PVLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAADSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +V+  
Sbjct: 127 LDKVAPM 133


>gi|163843041|ref|YP_001627445.1| transcription antitermination protein NusB [Brucella suis ATCC
           23445]
 gi|189035881|sp|B0CL95|NUSB_BRUSI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|163673764|gb|ABY37875.1| transcription antitermination factor NusB [Brucella suis ATCC
           23445]
          Length = 171

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL ++  L  +      +  ++         + +        D    RAIV   +    
Sbjct: 23  ARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D ++   L     L R   +L+ +LR    ++    DV    +V   V+ AK      
Sbjct: 83  KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141

Query: 119 HFAKLVNSILRR 130
              KLVN++L R
Sbjct: 142 DEPKLVNAVLDR 153


>gi|254718887|ref|ZP_05180698.1| transcription antitermination protein NusB [Brucella sp. 83/13]
 gi|265983873|ref|ZP_06096608.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306838197|ref|ZP_07471051.1| transcription antitermination factor NusB [Brucella sp. NF 2653]
 gi|264662465|gb|EEZ32726.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306406706|gb|EFM62931.1| transcription antitermination factor NusB [Brucella sp. NF 2653]
          Length = 171

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++         + +        D    RAIV   +    
Sbjct: 23  ARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D ++   L     L R   +L+ +LR    ++    DV    +V   V+ AK      
Sbjct: 83  KLDPMIHQALTEGWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141

Query: 119 HFAKLVNSILRR 130
              KLVN++L R
Sbjct: 142 DEPKLVNAVLDR 153


>gi|302866812|ref|YP_003835449.1| transcription antitermination factor NusB [Micromonospora
           aurantiaca ATCC 27029]
 gi|315503227|ref|YP_004082114.1| nusb antitermination factor [Micromonospora sp. L5]
 gi|302569671|gb|ADL45873.1| transcription antitermination factor NusB [Micromonospora
           aurantiaca ATCC 27029]
 gi|315409846|gb|ADU07963.1| NusB antitermination factor [Micromonospora sp. L5]
          Length = 144

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      +L                      +V      L
Sbjct: 9   MPARRKARKRALDVLFEADLRDRPPVEVLAGYLERIEQPRPDH--LGYAVGLVEGVAAHL 66

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID  +       +L R     + L R++V ++LY+D + D   +  AVE A++     
Sbjct: 67  DRIDETIASYAEGWTLERMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELARQM-STD 125

Query: 119 HFAKLVNSILRRVSRE 134
              + +N IL R++  
Sbjct: 126 DSPRFLNGILGRIAEY 141


>gi|145344415|ref|XP_001416728.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576954|gb|ABO95021.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 296

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 94/260 (36%), Gaps = 29/260 (11%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261
           +      + +      G   +Q  ++ +P          + +D CAAPG KT QL   + 
Sbjct: 42  VFPAGTDLHAHKLVKTGAVVLQGRASCLPAVALAPERGWACIDGCAAPGNKTTQLAALVG 101

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLF----DAVLVDAPC 316
               V A D   RRL++L+ N               D     P         A+L+D  C
Sbjct: 102 REGGVYAFDADARRLKRLKENAATTGSQGIIRAKCQDFLTVDPGNTVYASVRALLLDPSC 161

Query: 317 SSTGTIRRHPDVLWT----------------RDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           S +GT     D++                   D + + K A FQ+ +L     F +    
Sbjct: 162 SGSGTEVNRGDIMLRDALDEDDVEEIDAEADADEERVDKLAAFQKSVLKHAFCFPEVE-R 220

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           V +S CS+ ++++EEVV+ V+  +      +      W    +A+        R      
Sbjct: 221 VSYSTCSVHEKENEEVVRDVMDVAVEHGFKLAHALPKWHRRGIAIDGLSTEDARCL---- 276

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            + D +   M+GFF     R
Sbjct: 277 IRADPIEDDMEGFFVAIFER 296


>gi|332530152|ref|ZP_08406101.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624]
 gi|332040422|gb|EGI76799.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624]
          Length = 187

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R  +   L   +    + T  +D    D       + D     A+++  +     +D +
Sbjct: 47  SREFALQALYQHLV-GRNATADIDAFTRD--LTGFHKADAAHYDALLHGCVNEAEALDRL 103

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +  +L   L       + ++ +   +  +  DV    V++  +E AK         
Sbjct: 104 ILPLLDRKLAEISPIERAIMWMGAYEFQHCVDVPWRVVLNEYIELAKSFGGTDGHK 159


>gi|212709167|ref|ZP_03317295.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM
           30120]
 gi|212688079|gb|EEB47607.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM
           30120]
          Length = 138

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +         +  +      +   + +S  D    R +++       ++D ++ 
Sbjct: 11  ECAVQAIYSWQLSGNPIAEVEYEFIAE---QDMSDVDVNYFRELISGIANNATKLDQLMS 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LRV++ ++ Y  DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRVAMYELSYRQDVPFKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|326436918|gb|EGD82488.1| hypothetical protein PTSG_03137 [Salpingoeca sp. ATCC 50818]
          Length = 958

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 50/98 (51%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +D ++ D PC   GT+R+ PD+         V     Q ++ ++G++ ++ GG++ +S C
Sbjct: 445 YDRIVCDVPCCGDGTLRKSPDMWRRWHPGFAVGLHTLQLQIAMRGLALLRVGGVMTYSTC 504

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
           + +  + E VV +++      VE+V ++  +   +   
Sbjct: 505 TFNPIEDEAVVAQIITRCGGSVEVVDVSDMHPSLVRRP 542



 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 73/233 (31%), Gaps = 42/233 (18%)

Query: 248 LCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
            C   G   K+  +        A+ +   +L+     L  L +                 
Sbjct: 453 PCCGDGTLRKSPDMWRRWHPGFAVGLHTLQLQIAMRGLALLRVGGVMTYST---CTFNPI 509

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
             +AV+        G++                  A +  ++ ++G++ ++ GG++ +S 
Sbjct: 510 EDEAVVAQIITRCGGSVEVVDVSDMHPSLVRRPGIAHWTLQIAMRGLALLRVGGVMTYST 569

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-------------DMAMALSPEGW 412
           C+ +  + E VV +++      VE+V ++  +   +             +M    + +  
Sbjct: 570 CTFNPIEDEAVVAQIITRCGGSVEVVDVSDMHPSLVRRPGIAHWTVFDDNMEEHATYDDC 629

Query: 413 IR-----------ITPDMLE-------------KIDGVSSGMDGFFAVALRRL 441
           ++             P M               ++        GFF   LR++
Sbjct: 630 MKSDHLSPGAKRAFRPGMWPPKGAEDLGLERCMRLYPHDQDTGGFFVAVLRKV 682


>gi|307636683|gb|ADN79133.1| Transcription termination protein [Helicobacter pylori 908]
 gi|325995267|gb|ADZ50672.1| Transcription termination protein [Helicobacter pylori 2018]
 gi|325996871|gb|ADZ49079.1| Transcription termination protein [Helicobacter pylori 2017]
          Length = 138

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +  +      +   +       +   ++ N  L  +
Sbjct: 1   MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLVFALSLFNGVLERI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             IDA+++  L      R     + +LR+   +I +    +  +++  +E  K
Sbjct: 58  NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110


>gi|209694495|ref|YP_002262423.1| transcription antitermination protein NusB [Aliivibrio salmonicida
           LFI1238]
 gi|238055348|sp|B6EIA0|NUSB_ALISL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|208008446|emb|CAQ78611.1| N utilization substance protein B (protein NusB) [Aliivibrio
           salmonicida LFI1238]
          Length = 155

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50
            +  NAR  +   +      + ++  + +       +               + D    R
Sbjct: 8   AARRNARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVE 109
            + +       ++D  +   L   L         LLR+S+ +++   DV    V++ A+E
Sbjct: 68  DLFSGVALNHIKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFA 121
            AK         
Sbjct: 128 LAKVFAAEDSHK 139


>gi|254516860|ref|ZP_05128918.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR5-3]
 gi|219674365|gb|EED30733.1| transcription antitermination factor NusB [gamma proteobacterium
           NOR5-3]
          Length = 150

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 4/119 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +   L          + +      D  F ++   D    +A+++        +
Sbjct: 13  RRKARHYALQALYQWHMAGARPSDIEAEFRTDYDFEVV---DLEYFQALIHGVPPLAQEL 69

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           D++L+ +L   L       + LLR+   ++   +DV    V++ +V  AK+      + 
Sbjct: 70  DSLLEPLLDRELRELDPIERSLLRMGGFELRDRIDVPYRVVINESVALAKKFGAAESYK 128


>gi|27363793|ref|NP_759321.1| transcription antitermination protein NusB [Vibrio vulnificus
           CMCP6]
 gi|37679049|ref|NP_933658.1| transcription antitermination protein NusB [Vibrio vulnificus
           YJ016]
 gi|320157202|ref|YP_004189581.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
           MO6-24/O]
 gi|29611804|sp|Q8DFA0|NUSB_VIBVU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931709|sp|Q7MN52|NUSB_VIBVY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|27359910|gb|AAO08848.1| transcription antitermination factor NusB [Vibrio vulnificus CMCP6]
 gi|37197791|dbj|BAC93629.1| transcription termination factor [Vibrio vulnificus YJ016]
 gi|319932514|gb|ADV87378.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
           MO6-24/O]
          Length = 155

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  +         +     R           D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKENVATIEAQFLAGEKYDEEEHRAAEPALAAPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            ++   +     +D+ +   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLTGVVLSHTELDSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|262376860|ref|ZP_06070087.1| transcription antitermination factor NusB [Acinetobacter lwoffii
           SH145]
 gi|262308205|gb|EEY89341.1| transcription antitermination factor NusB [Acinetobacter lwoffii
           SH145]
          Length = 149

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   +         +  +      ++A   +   D      ++   +    
Sbjct: 10  AAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKV---DLSYYHELLTQVVANHE 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +DA+L  VL   L          LR+   ++  +L++    V+D A+E AK        
Sbjct: 67  ALDALLIPVLDRELSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK-HFGGADS 125

Query: 121 AKLVNSILRR 130
            K +N +L R
Sbjct: 126 HKYINGVLDR 135


>gi|270263549|ref|ZP_06191818.1| putative N-utilization protein B [Serratia odorifera 4Rx13]
 gi|270042433|gb|EFA15528.1| putative N-utilization protein B [Serratia odorifera 4Rx13]
          Length = 140

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E+     + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEHQFLTEQDVKDVDIAYFRELLSGVAVNAGLLDGLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++ +  DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRQLEELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|86137878|ref|ZP_01056454.1| transcription antitermination factor NusB [Roseobacter sp. MED193]
 gi|85825470|gb|EAQ45669.1| transcription antitermination factor NusB [Roseobacter sp. MED193]
          Length = 160

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR-----LLSQRDQILVRAIVNV 55
           MKS   ARL +   L  +    ++   ++                +++ D  L R ++  
Sbjct: 16  MKS--AARLYAVQALFQMEHSDLTFDKVIAEFENHRFGAVYEDGEMAEGDTGLFRKLLKD 73

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + F   ID + D  L     + R   +L+ L R + A+    +     V++  V+ A+ 
Sbjct: 74  AVNFQAPIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFTQSNTPPKVVINEFVDIARA 133

Query: 114 DKENRHFAKLVNSILRRV 131
                  AK VN++L  +
Sbjct: 134 FFPEGKEAKFVNAVLDHM 151


>gi|83816060|ref|YP_444173.1| transcription antitermination factor NusB [Salinibacter ruber DSM
           13855]
 gi|294505831|ref|YP_003569889.1| N utilization substance protein B homolog [Salinibacter ruber M8]
 gi|119390817|sp|Q2S6K8|NUSB_SALRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83757454|gb|ABC45567.1| transcription antitermination factor NusB [Salinibacter ruber DSM
           13855]
 gi|294342159|emb|CBH22937.1| N utilization substance protein B homolog [Salinibacter ruber M8]
          Length = 160

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S  +AR      L    +        L            S RD      +   TL+ +
Sbjct: 1   MSSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTRD--FAEHLFRETLKTM 58

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              D +++    +  + R     + LLR++  ++L + +V     VD A+E AKR    R
Sbjct: 59  EEADEIIEKHADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPR 118

Query: 119 H 119
            
Sbjct: 119 S 119


>gi|281201563|gb|EFA75772.1| Putative nucleolar protein [Polysphondylium pallidum PN500]
          Length = 463

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
           +KRR+ K + +     L            Y   +L+D V+VDA CS   ++R        
Sbjct: 288 NKRRVSKKKTSKVTYDLDGLYFCNTFYMRYSNAQLYDKVIVDAECSLDASVRHLLQYSKL 347

Query: 332 RD---TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                 +++ +    Q++L+  G + +K GG +V+S CS  K  +E+VV+ +L ++    
Sbjct: 348 GRNFLPNELTELTDLQKRLIQTGFNLLKVGGSLVYSTCSFCKVQNEDVVKWLLDNN-ANA 406

Query: 389 ELVPLNSAYWKSIDMAMALSP-------------EGWIRITPDMLEKIDGVSSGMDGFFA 435
           +L+P      +        +              +   R  P          +G  G F 
Sbjct: 407 KLLPCFEEQQQEQQQDSNNNNNNDYKVPYSKGFIDNTYRFYP---------KNGTSGMFI 457

Query: 436 VALRRL 441
               ++
Sbjct: 458 SKFTKI 463


>gi|312868252|ref|ZP_07728452.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis F0405]
 gi|311095997|gb|EFQ54241.1| transcription antitermination factor NusB [Streptococcus
           parasanguinis F0405]
          Length = 143

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           S  + R  +   L  +      +         D       + D    +  +V    +   
Sbjct: 9   SRRDLRERAFQSLMALEYDGDIVEACRFAYLHDKDLAEDKEVDLPAFLMNLVTGVYQSKD 68

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           ++D  +   L    ++ R     + +LR+ + +I   D      V+ AVE AK    +  
Sbjct: 69  QLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEITEFDTPQIVAVNEAVELAKAF-SDET 127

Query: 120 FAKLVNSILRRV 131
            ++ VN +L + 
Sbjct: 128 SSRFVNGVLSQF 139


>gi|254556506|ref|YP_003062923.1| transcription antitermination protein NusB [Lactobacillus plantarum
           JDM1]
 gi|308180449|ref|YP_003924577.1| transcription antitermination protein NusB [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|254045433|gb|ACT62226.1| transcription antitermination protein NusB [Lactobacillus plantarum
           JDM1]
 gi|308045940|gb|ADN98483.1| transcription antitermination protein NusB [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 139

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M  +    R  +   L  +          L            +       +  +V     
Sbjct: 1   MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEEADAVEIP--AYLSTLVTGVRE 58

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
               +DA +   L    SL R   +   +LR++  ++ +  DV     V+ A+E  K   
Sbjct: 59  HQAELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAIELTKAFS 118

Query: 116 ENRHFA 121
           ++R   
Sbjct: 119 DDRSRK 124


>gi|119896608|ref|YP_931821.1| transcription antitermination protein NusB [Azoarcus sp. BH72]
 gi|166215662|sp|A1K279|NUSB_AZOSB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119669021|emb|CAL92934.1| putative N utilization substance protein B [Azoarcus sp. BH72]
          Length = 155

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            ++   +   +    S   +    + ++      + D+ L   ++  TL  +  +     
Sbjct: 12  ELALQGVYQWLLSGNSPQVV--EAHVEAEAADFDKVDRELFVMLLRGTLDNVGALQDEFS 69

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             +   +       + +L +   ++ + ++     V++ A+E AK         + VN +
Sbjct: 70  PFIHRPIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTDG-HRFVNGV 128

Query: 128 LRR 130
           L +
Sbjct: 129 LDK 131


>gi|117928511|ref|YP_873062.1| NusB antitermination factor [Acidothermus cellulolyticus 11B]
 gi|166215656|sp|A0LUG6|NUSB_ACIC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|117648974|gb|ABK53076.1| NusB antitermination factor [Acidothermus cellulolyticus 11B]
          Length = 145

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      +L      +   +           +V       
Sbjct: 1   MPARTKARKRALDVLFEADLRAADPLEILADHTARADTPVPE-----YAVRLVEGVAAHR 55

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID +++   +  +L R     + +LR+++ ++L+  +V D  V+  AV+ A +D    
Sbjct: 56  AEIDRIIEQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLA-QDLSTA 114

Query: 119 HFAKLVNSI 127
             A  VN +
Sbjct: 115 ESAPFVNGV 123


>gi|254452714|ref|ZP_05066151.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 238]
 gi|198267120|gb|EDY91390.1| transcription antitermination factor NusB [Octadecabacter
           antarcticus 238]
          Length = 146

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     ++  +                 L++ D  L R +V  
Sbjct: 1   MKS--ASRLYAVQALFQMEHSSQTIESVTREFEDHRFGAVYEGDELAEGDVNLFRMLVET 58

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +    +ID + D  L     L R   +L+ L R +  +++  D      +   V+ AK 
Sbjct: 59  AVNEQTKIDQMTDRALVAKWPLGRIDPTLRALFRAAGVELIGRDTPPKVAISEYVDVAKA 118

Query: 114 DKENRHFAKLVNSILRRVSRE 134
             +     K VN++L  ++R+
Sbjct: 119 FFDGGEEPKFVNAVLDHMARQ 139


>gi|183602591|ref|ZP_02963956.1| NusB antitermination protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683633|ref|YP_002470016.1| transcription antitermination factor NusB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190665|ref|YP_002968059.1| transcription termination factor [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196071|ref|YP_002969626.1| transcription termination factor [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|254772615|sp|B8DTW1|NUSB_BIFA0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|183218232|gb|EDT88878.1| NusB antitermination protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621283|gb|ACL29440.1| transcription antitermination factor NusB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249057|gb|ACS45997.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250625|gb|ACS47564.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178403|gb|ADC85649.1| N utilization substance protein B [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793654|gb|ADG33189.1| Transcription termination factor [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 154

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  + + L     K      LLD        +            IV       
Sbjct: 1   MA-RSTARRRALNTLYEADEKGQDFLSLLDERIAQPGAQTPLPE---YAIEIVRGVDEHR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID+ L+       + R     + +LR++  +ILY  DV D   +D A+  +K   ++ 
Sbjct: 57  RDIDSQLNTHSTGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSKTLSDDA 116

Query: 119 HFA 121
             +
Sbjct: 117 APS 119


>gi|307103626|gb|EFN51884.1| hypothetical protein CHLNCDRAFT_54732 [Chlorella variabilis]
          Length = 498

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 13/151 (8%)

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             +                  L++A  +  GT+R+ PD+     T+        Q ++ L
Sbjct: 181 DVEPHHWVLDMCAAPGSKTFQLLEALHAGDGTMRKAPDIWRRWGTNSGNNLHTTQLRITL 240

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM---- 405
           +    ++ GG +V+S C+ +  + E VV +VLR +    ELV  +        +      
Sbjct: 241 RACQLLRVGGRLVYSTCTFNPVEDEAVVAEVLRRTKGAFELVDGSDHLPGLRRVPGLQRW 300

Query: 406 ---------ALSPEGWIRITPDMLEKIDGVS 427
                      S +G   + P +  +    +
Sbjct: 301 RDGLVPCLYRFSQDGLPALLPHVTRQRFHPT 331


>gi|332970403|gb|EGK09395.1| transcription antitermination factor NusB [Kingella kingae ATCC
           23330]
          Length = 151

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L  V   +     +         F+     D  L   +     +   
Sbjct: 13  SPRRRAREFAVQALYQVAMNQSIAAEVASHMREHGDFKN---ADNELFTELFFGAHQNQR 69

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
                +   L           + +L ++  ++  +       V++ AVE  K        
Sbjct: 70  EYMQHIRPHLDRDENAVNPIERAILLLATHELAAMPQTPYPVVINEAVELTKTFGGTDSH 129

Query: 121 A 121
            
Sbjct: 130 K 130


>gi|62289722|ref|YP_221515.1| transcription antitermination protein NusB [Brucella abortus bv. 1
           str. 9-941]
 gi|82699651|ref|YP_414225.1| transcription antitermination protein NusB [Brucella melitensis
           biovar Abortus 2308]
 gi|189023971|ref|YP_001934739.1| transcription antitermination protein NusB [Brucella abortus S19]
 gi|225852286|ref|YP_002732519.1| transcription antitermination protein NusB [Brucella melitensis
           ATCC 23457]
 gi|237815210|ref|ZP_04594208.1| transcription antitermination factor NusB [Brucella abortus str.
           2308 A]
 gi|254689031|ref|ZP_05152285.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|254693514|ref|ZP_05155342.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|254697166|ref|ZP_05158994.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254730062|ref|ZP_05188640.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|256113300|ref|ZP_05454168.1| transcription antitermination protein NusB [Brucella melitensis bv.
           3 str. Ether]
 gi|256257281|ref|ZP_05462817.1| transcription antitermination protein NusB [Brucella abortus bv. 9
           str. C68]
 gi|256264209|ref|ZP_05466741.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9]
 gi|260545525|ref|ZP_05821266.1| antitermination protein NusB [Brucella abortus NCTC 8038]
 gi|260754526|ref|ZP_05866874.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|260757747|ref|ZP_05870095.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|260761572|ref|ZP_05873915.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883554|ref|ZP_05895168.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261213774|ref|ZP_05928055.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|265994713|ref|ZP_06107270.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|297248127|ref|ZP_06931845.1| transcription antitermination factor NusB [Brucella abortus bv. 5
           str. B3196]
 gi|75496998|sp|Q57DY0|NUSB_BRUAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119372280|sp|Q2YNC5|NUSB_BRUA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689358|sp|B2S518|NUSB_BRUA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772617|sp|C0RIA7|NUSB_BRUMB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|62195854|gb|AAX74154.1| NusB, N utilization substance protein B [Brucella abortus bv. 1
           str. 9-941]
 gi|82615752|emb|CAJ10748.1| Antitermination protein NusB [Brucella melitensis biovar Abortus
           2308]
 gi|189019543|gb|ACD72265.1| Antitermination protein NusB [Brucella abortus S19]
 gi|225640651|gb|ACO00565.1| transcription antitermination factor NusB [Brucella melitensis ATCC
           23457]
 gi|237790047|gb|EEP64257.1| transcription antitermination factor NusB [Brucella abortus str.
           2308 A]
 gi|260096932|gb|EEW80807.1| antitermination protein NusB [Brucella abortus NCTC 8038]
 gi|260668065|gb|EEX55005.1| transcription antitermination protein NusB [Brucella abortus bv. 4
           str. 292]
 gi|260672004|gb|EEX58825.1| transcription antitermination protein NusB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674634|gb|EEX61455.1| transcription antitermination protein NusB [Brucella abortus bv. 6
           str. 870]
 gi|260873082|gb|EEX80151.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260915381|gb|EEX82242.1| transcription antitermination protein NusB [Brucella abortus bv. 3
           str. Tulya]
 gi|262765826|gb|EEZ11615.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094453|gb|EEZ18275.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9]
 gi|297175296|gb|EFH34643.1| transcription antitermination factor NusB [Brucella abortus bv. 5
           str. B3196]
 gi|326408790|gb|ADZ65855.1| Antitermination protein NusB [Brucella melitensis M28]
 gi|326538508|gb|ADZ86723.1| transcription antitermination factor NusB [Brucella melitensis
           M5-90]
          Length = 171

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++         + +        D    RAIV   +    
Sbjct: 23  ARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D ++   L     L R   +L+ +LR    ++    DV    +V   V+ AK      
Sbjct: 83  KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141

Query: 119 HFAKLVNSILRR 130
              KLVN++L R
Sbjct: 142 DEPKLVNAVLDR 153


>gi|17987469|ref|NP_540103.1| transcription antitermination protein NusB [Brucella melitensis bv.
           1 str. 16M]
 gi|256044456|ref|ZP_05447360.1| transcription antitermination protein NusB [Brucella melitensis bv.
           1 str. Rev.1]
 gi|260563807|ref|ZP_05834293.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M]
 gi|265990877|ref|ZP_06103434.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|22095950|sp|Q8YGH3|NUSB_BRUME RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|17983165|gb|AAL52367.1| n utilization substance protein b [Brucella melitensis bv. 1 str.
           16M]
 gi|260153823|gb|EEW88915.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M]
 gi|263001661|gb|EEZ14236.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 171

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +      +  ++         + +        D    RAIV   +    
Sbjct: 23  ARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D ++   L     L R   +L+ +LR    ++    DV    +V   V+ AK      
Sbjct: 83  KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141

Query: 119 HFAKLVNSILRR 130
              KLVN++L R
Sbjct: 142 DEPKLVNAVLDR 153


>gi|59711311|ref|YP_204087.1| transcription antitermination protein NusB [Vibrio fischeri ES114]
 gi|197335476|ref|YP_002155467.1| transcription antitermination factor NusB [Vibrio fischeri MJ11]
 gi|31076819|sp|Q8G9G3|NUSB_VIBFI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|75431770|sp|Q5E6Z7|NUSB_VIBF1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690266|sp|B5FBF9|NUSB_VIBFM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|26522774|dbj|BAC44861.1| NusB protein [Vibrio fischeri]
 gi|59479412|gb|AAW85199.1| transcription antitermination factor NusB [Vibrio fischeri ES114]
 gi|197316966|gb|ACH66413.1| transcription antitermination factor NusB [Vibrio fischeri MJ11]
          Length = 155

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50
            +  NAR  +   +      + ++  + +       +               + D    R
Sbjct: 8   AARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVE 109
            + +       ++D  +   L   L         LLR+S+ +++   DV    V++ A+E
Sbjct: 68  DLFSGVALNHMKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFA 121
            AK         
Sbjct: 128 LAKVFAAEDSHK 139


>gi|83949450|ref|ZP_00958183.1| putative N utilization substance protein B [Roseovarius nubinhibens
           ISM]
 gi|83837349|gb|EAP76645.1| putative N utilization substance protein B [Roseovarius nubinhibens
           ISM]
          Length = 160

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVNV 55
           K    ARL +   L  +    +S+  +                      D      ++  
Sbjct: 14  KMRSAARLYAVQALFQMEHSSLSVDEVRREFLEFRFGAEFDDGIDMQEGDAEHFADVIEG 73

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +++  +ID + D  L     + R   +L+ L R + A+++        V+   V+ AK 
Sbjct: 74  AVQWQAKIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELMQEGTPPKVVIVEYVDIAKS 133

Query: 114 DKENRHFAKLVNSILR 129
                   K VN++L 
Sbjct: 134 FFPEGREPKFVNAVLD 149


>gi|330466963|ref|YP_004404706.1| nusb antitermination factor [Verrucosispora maris AB-18-032]
 gi|328809934|gb|AEB44106.1| nusb antitermination factor [Verrucosispora maris AB-18-032]
          Length = 144

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      +L                      +V      L
Sbjct: 9   MPARRKARKRALDVLFEADLRDRPPVEVLAGYIERIEKPRPDH--LGYAVGLVEGVAGHL 66

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + L R++V ++LY+D + D   +  AVE A++     
Sbjct: 67  DRIDELISSYAEGWTLDRMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELARQM-STD 125

Query: 119 HFAKLVNSILRRVSRE 134
              + +N +L R++  
Sbjct: 126 DSPRFLNGLLGRIAEY 141


>gi|317495194|ref|ZP_07953564.1| transcription antitermination factor NusB [Gemella moribillum M424]
 gi|316914616|gb|EFV36092.1| transcription antitermination factor NusB [Gemella moribillum M424]
          Length = 131

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    R     +L  +          LD              +   V   +   +  L
Sbjct: 1   MKSRHELREAVFKILFQIE------NTELD-YKELLELEQEEIANSSYVNNTLTEIIDKL 53

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID ++   L    L R     +Q+LR+S  +IL+ D+     ++ AVE +K+  E   
Sbjct: 54  EEIDNIISNNLKDWKLERLSKMDRQILRISAYEILHSDIPYKVSINEAVELSKKYSEKDE 113

Query: 120 FAKLVNSILR 129
             K +N +L+
Sbjct: 114 SYKFINGVLK 123


>gi|126727899|ref|ZP_01743727.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2150]
 gi|126702840|gb|EBA01945.1| transcription antitermination factor NusB [Rhodobacterales
           bacterium HTCC2150]
          Length = 155

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNV 55
           MKS   AR  +   L  +      +  ++                + + D      ++  
Sbjct: 11  MKS--AARFFAVQALFQLEHSGQEVDKVISEFEEHRFGATFDGDEMQEGDPATFGLLMRG 68

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +    +ID + D  L     L R   +L+ L R + A++   +     V++  VE A+ 
Sbjct: 69  AVNLQAKIDQMTDRALVVKWPLGRIDPTLRALFRAAGAELTEGETPPKVVINEFVEVARA 128

Query: 114 DKENRHFAKLVNSILRRV 131
                   K VN +L  +
Sbjct: 129 FFPETKEPKFVNGVLDHM 146


>gi|254787582|ref|YP_003075011.1| transcription antitermination protein NusB [Teredinibacter turnerae
           T7901]
 gi|259514910|sp|C5BS84|NUSB_TERTT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|237683677|gb|ACR10941.1| putative transcription antitermination factor NusB [Teredinibacter
           turnerae T7901]
          Length = 147

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query: 1   MK----SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK    +   AR  +   +         L  +    + D+    +S+ D      + +  
Sbjct: 1   MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHTDN---DMSKVDTEYFHELFHGV 57

Query: 57  LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114
                 +DA     L S  L +       LLR +  ++   +DV    V++ AV  AK+ 
Sbjct: 58  AADKSALDACFLPHLKSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAKKF 117

Query: 115 KENRHFAKLVNSILRR 130
                  K VN +L +
Sbjct: 118 -GAEDSHKFVNGVLDK 132


>gi|170074302|ref|XP_001870551.1| NOL1/NOP2/Sun domain family [Culex quinquefasciatus]
 gi|167871085|gb|EDS34468.1| NOL1/NOP2/Sun domain family [Culex quinquefasciatus]
          Length = 450

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 12/172 (6%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279
           ++ D ++ +P           VLD CAAPGGK       +    +   DV + R+ ++  
Sbjct: 262 FLLDGASILPALALDVQPGDRVLDACAAPGGKSLLLLQTLRPGTLVCNDVQESRVNRIRK 321

Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWT 331
                     +        I   DA +     ++D +LVD PC++     +    ++  +
Sbjct: 322 LMGSYLYDFSENWKQKRCFITHGDARNLTEYDMYDRILVDVPCTTDRHSVMENDNNIFKS 381

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
               + ++    Q  LL   +  ++PGG +V+S CSL    ++ VV   L +
Sbjct: 382 SRVKERLRLPELQAGLLANCLRLLRPGGSLVYSTCSLSPVQNDGVVHMALSN 433


>gi|115377906|ref|ZP_01465091.1| transcription antitermination factor NusB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822844|ref|YP_003955202.1| n utilization substance protein b [Stigmatella aurantiaca DW4/3-1]
 gi|115365066|gb|EAU64116.1| transcription antitermination factor NusB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395916|gb|ADO73375.1| N utilization substance protein B [Stigmatella aurantiaca DW4/3-1]
          Length = 141

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 5/134 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISL--TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M +    R  +   L  +     +     L       S             + +V     
Sbjct: 1   MGARRTGRERALQALYQLEMTPSTSVHEALASAWAASSEEGKPDPEAVRFAQELVEGVQT 60

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
               +D +++    +  L R     + +LR+ V ++ Y  D+     ++ AVE  K +  
Sbjct: 61  RRAEVDQLIEKHSHNWRLDRMSRIDRNVLRLGVFELKYRPDIPKKVSINEAVELGK-NFG 119

Query: 117 NRHFAKLVNSILRR 130
               +  VN +L R
Sbjct: 120 TEESSAFVNGLLDR 133


>gi|90579826|ref|ZP_01235634.1| transcription antitermination protein NusB [Vibrio angustum S14]
 gi|330445271|ref|ZP_08308923.1| transcription antitermination factor NusB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|90438711|gb|EAS63894.1| transcription antitermination protein NusB [Vibrio angustum S14]
 gi|328489462|dbj|GAA03420.1| transcription antitermination factor NusB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 156

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  +         F     +           D    R
Sbjct: 8   AARRNARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDVSYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            +    +     +D+ +   L   L         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLFTGVVLSHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRR 130
            AK         K VN +L +
Sbjct: 128 LAK-LFGAEDSHKFVNGVLDK 147


>gi|332297436|ref|YP_004439358.1| NusB antitermination factor [Treponema brennaborense DSM 12168]
 gi|332180539|gb|AEE16227.1| NusB antitermination factor [Treponema brennaborense DSM 12168]
          Length = 138

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDL-EYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R+++   L       +S+  LL              +      R ++  T+  +  ID++
Sbjct: 7   RILAFQALFSWDVGGMSVDELLAFPWMEADVLAKTDEGSLSFARLLIAGTIEHIDEIDSL 66

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +   L      R       +LR+SV  +LY  D+    V+D A++ AK       F + +
Sbjct: 67  IKAHLDSWDFERINKVDLAVLRISVYPLLYQHDIHPSIVIDEAIDIAKEFGSGDSF-RFI 125

Query: 125 NSILRR 130
           N++L  
Sbjct: 126 NAVLDN 131


>gi|156973480|ref|YP_001444387.1| transcription antitermination protein NusB [Vibrio harveyi ATCC
           BAA-1116]
 gi|269962347|ref|ZP_06176697.1| N utilization substance protein B [Vibrio harveyi 1DA3]
 gi|166215728|sp|A7MWU1|NUSB_VIBHB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|156525074|gb|ABU70160.1| hypothetical protein VIBHAR_01170 [Vibrio harveyi ATCC BAA-1116]
 gi|269832843|gb|EEZ86952.1| N utilization substance protein B [Vibrio harveyi 1DA3]
          Length = 155

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50
            +  NAR  +   +      + ++  + +       +               + D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKDNVATIEEQFLSGDKYDEEELHASEPALAAPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            +++  +     +D+ +   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  ELLSGVVLSHSELDSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|325266364|ref|ZP_08133042.1| transcription antitermination factor NusB [Kingella denitrificans
           ATCC 33394]
 gi|324982157|gb|EGC17791.1| transcription antitermination factor NusB [Kingella denitrificans
           ATCC 33394]
          Length = 148

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      +I    +       + F+     D  L  A+     R   
Sbjct: 10  SPRRRAREFAVQALYQTAINKIPAEEVAKNTREHTDFKN---ADDELFTAVFFGAHRQQR 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
                +   L           + +L ++V ++  + +     V++ A+E  K        
Sbjct: 67  EYMQQIRPHLDRDENLISPVERAVLLLAVHELAAMPETPYPVVINEAIELTKTFGGTDSH 126

Query: 121 A 121
            
Sbjct: 127 K 127


>gi|89073134|ref|ZP_01159673.1| transcription antitermination protein NusB [Photobacterium sp.
           SKA34]
 gi|89051087|gb|EAR56544.1| transcription antitermination protein NusB [Photobacterium sp.
           SKA34]
          Length = 156

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  +         F     +           D    R
Sbjct: 8   AARRNARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDVSYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            +    +     +D+ +   L   L         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLFTGVVLSHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRR 130
            AK         K +N +L +
Sbjct: 128 LAK-LFGAEDSHKFINGVLDK 147


>gi|270157438|ref|ZP_06186095.1| transcription antitermination factor NusB [Legionella longbeachae
           D-4968]
 gi|289164170|ref|YP_003454308.1| N utilization substance protein B homolog [Legionella longbeachae
           NSW150]
 gi|269989463|gb|EEZ95717.1| transcription antitermination factor NusB [Legionella longbeachae
           D-4968]
 gi|288857343|emb|CBJ11171.1| putative N utilization substance protein B homolog [Legionella
           longbeachae NSW150]
          Length = 147

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++   L   +        + ++E        + + D      +++     +  ++ 
Sbjct: 11  KARKLALQALYQWLMAGT---EVCEIEAQFRVINKMDKVDVDYFCRLLHGVPEHVASLET 67

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
            +   L   +         +LR+   ++LY  ++    V+D A+   K    ++   + V
Sbjct: 68  SITPFLDREISALNPIELTVLRLGSFELLYCPEIPYKVVLDEAISLTKEF-GSQDGYRYV 126

Query: 125 NSILRRVSREKIELLQRIAG 144
           N +L  ++R+   +    + 
Sbjct: 127 NGVLNNLARQVRSIEISHSN 146


>gi|254475988|ref|ZP_05089374.1| transcription antitermination factor NusB [Ruegeria sp. R11]
 gi|214030231|gb|EEB71066.1| transcription antitermination factor NusB [Ruegeria sp. R11]
          Length = 163

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR-----LLSQRDQILVRAIVNVT 56
           K    +RL +   L  +    ++L  ++                +++ D  + R +V   
Sbjct: 18  KMRSASRLYAVQALFQMEHSNLTLDRVIVEFEDFRFGAVYEDGEMAEGDSKVFRKLVEDA 77

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
           +    RID + D  L     + R   +L+ L R + A++         V++  V+ A+  
Sbjct: 78  VSHQARIDQMTDRALVAKWPIGRIDPTLRALFRAAGAELTESKTPPKVVINEFVDIARAF 137

Query: 115 KENRHFAKLVNSILRRV 131
                  K VN++L  +
Sbjct: 138 FPEGKEPKFVNAVLDHM 154


>gi|15842067|ref|NP_337104.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis CDC1551]
 gi|13882348|gb|AAK46918.1| N utilization substance protein B [Mycobacterium tuberculosis
           CDC1551]
          Length = 290

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL     + IS   ++D     +  +    R      A+          I
Sbjct: 10  RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++   L   +L R     + +LRVSV ++L+  DV +  VVD AV+ AK         
Sbjct: 70  DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSP 128

Query: 122 KLVNSILRRVS 132
             VN +L +V 
Sbjct: 129 GFVNGVLGQVM 139


>gi|224058099|ref|XP_002191888.1| PREDICTED: NOL1/NOP2/Sun domain family, member 4 [Taeniopygia
           guttata]
          Length = 410

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 24/235 (10%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLR 280
           +++ DA++ +PV       +  VLDLCAAPGGKT  L+ +G      A DVS  R ++L 
Sbjct: 184 YYLMDAASLLPVLALSVQPDDFVLDLCAAPGGKTLALLQTGFCGHLAANDVSVSRTKRLY 243

Query: 281 CNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332
             L            +    +   +D      F  VLVD PC++     +    ++   R
Sbjct: 244 HILHSYVPKEVRDTVSVTSYDGRDWDQVKGGTFHKVLVDVPCTTDRHSAMEEENNIFHKR 303

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RSSPIPV 388
            T +       Q +LL+ GI   +PGG VV+S CSL    +E VV++ L        I V
Sbjct: 304 RTKERQMLPMLQLQLLMAGILAARPGGAVVYSTCSLSPLQNECVVERALDVAGAQFNISV 363

Query: 389 ELVPLNSAYWKSIDMAMALSP--EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +  L+       D     S    G + + P +              +   LRRL
Sbjct: 364 HVEDLSHFRTLFQDTFSFFSDCRLGEL-VLPHLTANFGP-------MYFCKLRRL 410


>gi|319892510|ref|YP_004149385.1| Transcription termination protein NusB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162206|gb|ADV05749.1| Transcription termination protein NusB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464388|gb|ADX76541.1| transcription antitermination factor NusB [Staphylococcus
           pseudintermedius ED99]
          Length = 130

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +   L  +  K   LT    + +    +  L   D   ++ +V+        
Sbjct: 2   SRKQARSQAFQTLFQLEMKNTELTIDEAISFIKEDYPDL---DFDFIKWLVSGVKDHQHV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   ++ R   + + +LR++  ++ + D  +  +++ AVE AK+  ++ H+ 
Sbjct: 59  LDETISPHLNGWTIARLLKTDRIILRMATFEMNHSDTPEKVIINEAVELAKQFSDDDHYK 118


>gi|238752770|ref|ZP_04614239.1| N utilization substance protein B [Yersinia rohdei ATCC 43380]
 gi|238709028|gb|EEQ01277.1| N utilization substance protein B [Yersinia rohdei ATCC 43380]
          Length = 138

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E    + + +   D    R +++        +DA++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDISYFRELLSGVAVNAASLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PVLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAADSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|325475118|gb|EGC78304.1| NOL1/NOP2/sun family protein [Treponema denticola F0402]
          Length = 263

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 22/236 (9%)

Query: 216 PGFAEGVW--WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK-------TAQLIVSGAKV 266
             ++E +   +  D ++    +    L   S LD+CAAPGGK         +     A  
Sbjct: 38  EAYSENLIQNYYLDYASIQAARAMPVLEEGSCLDMCAAPGGKTLVLLSRIKENAEIQANE 97

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRR 324
            + D   R +  L  +L   +     +   DA          +D +L+DAPCSS   + +
Sbjct: 98  LSADRRNRLIRVLDEHLSEENRKRIKVSSYDASRMPRYGQELYDRILLDAPCSSERHVLQ 157

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           +   L       I   +  Q  LL      +KP G +V+S C+L  ++++ +++K+++  
Sbjct: 158 NEKYLKQWTEARIKNLSQRQWALLSAAFLLLKPKGFLVYSTCALADEENDFLIEKLIKKY 217

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              V L     ++   +            R  PD  +    +       +   +++
Sbjct: 218 KEKVRLEDKLDSFSPILPEKTRY----GFRFLPDKADGAGPI-------YFSLIQK 262


>gi|253314894|ref|ZP_04838107.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
          Length = 129

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + + +     L   D   +  +V+      P 
Sbjct: 2   SRKESRVQAFQTLFQLEMKDSDLTINEAISFINDDNPDL---DFEFIHWLVSGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   ++ R   + + +LR++  +IL+ D     V++ AVE  K+  ++ H+ 
Sbjct: 59  LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRR 130
             +N +L  
Sbjct: 119 -FINGVLSN 126


>gi|156743196|ref|YP_001433325.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941]
 gi|189035899|sp|A7NP12|NUSB_ROSCS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|156234524|gb|ABU59307.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941]
          Length = 142

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 52/140 (37%), Gaps = 9/140 (6%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M S     R ++  +L  +         ++     +     L    +  +R +V      
Sbjct: 1   MASLRHRVRAIALQILFELDATDHPPDQVVGRRLEEEQ---LPPEGERFLRRLVFGAWEH 57

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDK 115
              +D +++       + +     + +LR+++ + L          A+++ AVE AK+  
Sbjct: 58  AAHLDRIIEEAAPNWPVSQMPGVDKAILRIALFEALIDKEEKTPLKAIINEAVELAKQY- 116

Query: 116 ENRHFAKLVNSILRRVSREK 135
            + + ++ VN +L  V    
Sbjct: 117 GSDNSSRFVNGVLGTVVSRY 136


>gi|256826969|ref|YP_003150928.1| transcription antitermination factor NusB [Cryptobacterium curtum
           DSM 15641]
 gi|256583112|gb|ACU94246.1| transcription antitermination factor NusB [Cryptobacterium curtum
           DSM 15641]
          Length = 162

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 1   MKSGMN---ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M        AR ++  +L          + ++           L         ++V    
Sbjct: 1   MAKRHERTLARRMAVQVLYEGEITDTLASEIVLRPDAVPDGGALP----AYAVSLVEGVC 56

Query: 58  RFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
                ID  +     + S+ R     + ++R++V ++ +  DV     ++ AVE AK   
Sbjct: 57  AHRVAIDNKIAAASENWSVGRMPLVDRAIMRLAVFEMTHCDDVPLSVSINEAVELAKEFG 116

Query: 116 ENRHFAKLVNSILRRVSREKI 136
                A+ VN IL R++R+  
Sbjct: 117 GADDSARFVNGILGRIARQDN 137


>gi|238063911|ref|ZP_04608620.1| transcription antitermination factor nusB [Micromonospora sp. ATCC
           39149]
 gi|237885722|gb|EEP74550.1| transcription antitermination factor nusB [Micromonospora sp. ATCC
           39149]
          Length = 136

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      +L                      +V      L
Sbjct: 1   MPARRKARKRALDVLFEADLRDRPPVEVLAGYVERIEKPHPEH--LGYAVGLVEGVAAHL 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID ++       +L R     + L R++V ++LY+D + D   +  AVE A++     
Sbjct: 59  GRIDELIASYAEGWTLDRMPAVDRNLARIAVYELLYVDELDDAVAISEAVELARQM-STD 117

Query: 119 HFAKLVNSILRRVSRE 134
              + +N +L R++  
Sbjct: 118 DSPRFLNGVLGRIAEY 133


>gi|300767235|ref|ZP_07077147.1| transcription antitermination factor NusB [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300495054|gb|EFK30210.1| transcription antitermination factor NusB [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 139

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M  +    R  +   L  +          L            +       +  +V     
Sbjct: 1   MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEEADAVEIP--AYLSTLVTGVRE 58

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
               +DA +   L    SL R   +   +LR++  ++ +  DV     V+ A+E  K   
Sbjct: 59  HQAELDAQIQPYLSQKWSLNRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAIELTKAFS 118

Query: 116 ENRHFA 121
           ++R   
Sbjct: 119 DDRSRK 124


>gi|116333616|ref|YP_795143.1| transcription antitermination protein NusB [Lactobacillus brevis
           ATCC 367]
 gi|122269697|sp|Q03RR0|NUSB_LACBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116098963|gb|ABJ64112.1| NusB antitermination factor [Lactobacillus brevis ATCC 367]
          Length = 142

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M  +    R  +  +L  +          L      D   +L+   D   +  +VN  L 
Sbjct: 1   MTLTRHQIRERAFQMLFALNANPEADHDALYQRVLTDDPNQLVPVPD--YLATLVNGVLA 58

Query: 59  FLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
               +DA +D  L +   L R   +   +LR++  +I +  DV +   V+ A+E AK   
Sbjct: 59  HQSELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEALELAKNFS 118

Query: 116 ENRH 119
           ++R 
Sbjct: 119 DDRS 122


>gi|254821798|ref|ZP_05226799.1| transcription antitermination protein NusB [Mycobacterium
           intracellulare ATCC 13950]
          Length = 169

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR  +  LL     + +S   ++D+  G +         Q    A+         
Sbjct: 6   KGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLAEANPEIAPLQPYTAAVARGVGEHAA 65

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            +D ++   L   +L R     + +LRV+V ++LY  DV +   VD AV+ AK       
Sbjct: 66  HVDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKE-LSTDD 124

Query: 120 FAKLVNSILRRVS 132
               VN +L  V 
Sbjct: 125 SPGFVNGVLGHVM 137


>gi|238021694|ref|ZP_04602120.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147]
 gi|237866308|gb|EEP67350.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147]
          Length = 145

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L  V   +I    +       + +R     D  L  AI         
Sbjct: 4   SPRRRAREFAVQALYQVALNKIPAPEVAQHIRESNDYR---HADGELFTAIFFGAHNNQR 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
               ++  +L           + +L V+V ++  + +     +++ A+E  K        
Sbjct: 61  EYMQIIRPLLDRDENLINPIERSVLLVAVHELKAMPETPYPVIINEAIEVTKTFGGTDS- 119

Query: 121 AKLVNSILRR 130
            K +N IL +
Sbjct: 120 HKFINGILDK 129


>gi|15609670|ref|NP_217049.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Rv]
 gi|148662371|ref|YP_001283894.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|148823728|ref|YP_001288482.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis F11]
 gi|167967008|ref|ZP_02549285.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|215404474|ref|ZP_03416655.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 02_1987]
 gi|215412305|ref|ZP_03421065.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215446785|ref|ZP_03433537.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|218754265|ref|ZP_03533061.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis GM 1503]
 gi|253798387|ref|YP_003031388.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 1435]
 gi|254232655|ref|ZP_04925982.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis C]
 gi|254366739|ref|ZP_04982782.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551582|ref|ZP_05142029.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289553678|ref|ZP_06442888.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 605]
 gi|289746319|ref|ZP_06505697.1| N utilization substance protein nusB [Mycobacterium tuberculosis
           02_1987]
 gi|289758663|ref|ZP_06518041.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|289762701|ref|ZP_06522079.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294994358|ref|ZP_06800049.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 210]
 gi|297635143|ref|ZP_06952923.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732134|ref|ZP_06961252.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN R506]
 gi|298526007|ref|ZP_07013416.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776807|ref|ZP_07415144.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu001]
 gi|306780573|ref|ZP_07418910.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu002]
 gi|306789935|ref|ZP_07428257.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu004]
 gi|313659467|ref|ZP_07816347.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis KZN V2475]
 gi|7387976|sp|P95020|NUSB_MYCTU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215701|sp|A5U5N2|NUSB_MYCTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|8569494|pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium
           Tuberculosis
 gi|8569495|pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium
           Tuberculosis
 gi|1781069|emb|CAB06175.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|124601714|gb|EAY60724.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis C]
 gi|134152250|gb|EBA44295.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506523|gb|ABQ74332.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis H37Ra]
 gi|148722255|gb|ABR06880.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           F11]
 gi|253319890|gb|ACT24493.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 1435]
 gi|289438310|gb|EFD20803.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 605]
 gi|289686847|gb|EFD54335.1| N utilization substance protein nusB [Mycobacterium tuberculosis
           02_1987]
 gi|289710207|gb|EFD74223.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289714227|gb|EFD78239.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis T85]
 gi|298495801|gb|EFI31095.1| transcription antitermination protein NusB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214814|gb|EFO74213.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu001]
 gi|308326587|gb|EFP15438.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu002]
 gi|308333625|gb|EFP22476.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           SUMu004]
 gi|323718889|gb|EGB28044.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904148|gb|EGE51081.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           W-148]
 gi|328458157|gb|AEB03580.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
           KZN 4207]
          Length = 156

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL     + IS   ++D     +  +    R      A+          I
Sbjct: 10  RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++   L   +L R     + +LRVSV ++L+  DV +  VVD AV+ AK         
Sbjct: 70  DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSP 128

Query: 122 KLVNSILRRVS 132
             VN +L +V 
Sbjct: 129 GFVNGVLGQVM 139


>gi|262371010|ref|ZP_06064333.1| transcription termination L factor [Acinetobacter johnsonii SH046]
 gi|262314086|gb|EEY95130.1| transcription termination L factor [Acinetobacter johnsonii SH046]
          Length = 152

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   +         +  +      ++A   +   D      ++   +    
Sbjct: 10  AAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKV---DLSYYHELLTQVVANHE 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +DA+L  VL   +          LR+   ++  +L++    V+D A+E AK        
Sbjct: 67  ALDALLIPVLDREVSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK-HFGGADS 125

Query: 121 AKLVNSILRR 130
            K +N +L R
Sbjct: 126 HKYINGVLDR 135


>gi|325971258|ref|YP_004247449.1| NusB antitermination factor [Spirochaeta sp. Buddy]
 gi|324026496|gb|ADY13255.1| NusB antitermination factor [Spirochaeta sp. Buddy]
          Length = 152

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRD---QILVRAIVNVT 56
           MK+   AR ++   L  +   +  L  L +   +  +      Q +   +I    +V  T
Sbjct: 1   MKTRHKARELALQTLYAMDFNKE-LDVLHIPAIFSGNTEEEHDQLEEEVKIYGMYLVRGT 59

Query: 57  LRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110
           L  L  ID ++    L   + R     + +LR+SV  + + ++  + ++D AV+ 
Sbjct: 60  LENLFEIDELISKYSLNRPIERIDIVDRNILRMSVFCLRFGNIHPHIIIDEAVKL 114


>gi|222111432|ref|YP_002553696.1| nusb antitermination factor [Acidovorax ebreus TPSY]
 gi|254772634|sp|B9MBL7|NUSB_DIAST RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|221730876|gb|ACM33696.1| NusB antitermination factor [Acidovorax ebreus TPSY]
          Length = 177

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L   +         +D+   D       + D     A+++  +     +D +
Sbjct: 38  AREFALQALYQHLVGGNDA-TAIDVFTRD--LSGFHKADAAHYDALLHGCITTAQYMDEL 94

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           +   L   +         ++ + V +  +  DV    V++  +E AK         
Sbjct: 95  IAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHK 150


>gi|82751129|ref|YP_416870.1| transcription antitermination protein NusB [Staphylococcus aureus
           RF122]
 gi|119390829|sp|Q2YYB7|NUSB_STAAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|82656660|emb|CAI81086.1| probable N utilization substance protein B [Staphylococcus aureus
           RF122]
          Length = 129

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +       L   D   +  +V+      P 
Sbjct: 2   SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDGNPDL---DFEFIHWLVSGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   ++ R   + + +LR++  +IL+ D     V++ AVE  K+  ++ H+ 
Sbjct: 59  LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRR 130
             +N +L  
Sbjct: 119 -FINGVLSN 126


>gi|203287574|ref|YP_002222589.1| N-utilization substance protein B [Borrelia recurrentis A1]
 gi|201084794|gb|ACH94368.1| N-utilization substance protein B [Borrelia recurrentis A1]
          Length = 146

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+++   +  +     +   + D+   +     L    ++    +VN T   L
Sbjct: 3   MDLRHKARILAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDLKLFYSVLVNGTYDNL 62

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117
             ID ++  + L   L R       +LR+SV  + +  LDV    ++D A+  AK+   N
Sbjct: 63  ESIDKLISGISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIAKKY-GN 121

Query: 118 RHFAKLVNSILRRVSREK 135
           ++  K VN IL  + ++ 
Sbjct: 122 KNSDKFVNGILDALLKDM 139


>gi|154487009|ref|ZP_02028416.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis
           L2-32]
 gi|154084872|gb|EDN83917.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis
           L2-32]
          Length = 147

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   AR  + + L     K    L+ L +      A   L          IV      + 
Sbjct: 2   ARSTARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPD----YAIEIVRGVAEHIA 57

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            IDA+LD       + R     + +LR++  +I++  DV +   +D A+  AK   ++  
Sbjct: 58  AIDAMLDEHSTGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALSLAKTLCDDDS 117

Query: 120 FA 121
            A
Sbjct: 118 PA 119


>gi|312438007|gb|ADQ77078.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 132

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +       L   D   +  +V+      P 
Sbjct: 2   SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDL---DFEFIHWLVSGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   ++ R   + + +LR++  +IL+ D     V++ AVE  K+  ++ H+ 
Sbjct: 59  LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRRVSR 133
             +N +L  +  
Sbjct: 119 -FINGVLSNIKN 129


>gi|257456352|ref|ZP_05621549.1| transcription antitermination factor NusB [Treponema vincentii ATCC
           35580]
 gi|257446438|gb|EEV21484.1| transcription antitermination factor NusB [Treponema vincentii ATCC
           35580]
          Length = 147

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 3/138 (2%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R+++   L       +S   LL   + +   + L   D +  + +    +  +  ID ++
Sbjct: 9   RILAFQALYAWDAGSLSPDDLLPFPWVERTGKELHDEDFLFSQLLFLGAVEHIDEIDGLI 68

Query: 68  DFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
              L +    R K   + +LR+    +L+  D     V++ AV  A R        K VN
Sbjct: 69  AKNLENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAVTIA-RIYGTDDSFKFVN 127

Query: 126 SILRRVSREKIELLQRIA 143
           ++L  + RE ++ L    
Sbjct: 128 AVLDSIKRECLDCLHEKD 145


>gi|118378686|ref|XP_001022517.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|89304284|gb|EAS02272.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 477

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 81/266 (30%), Gaps = 47/266 (17%)

Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269
            ++P +      +   S     +      +  ++D C+APG KT Q    I    KV A 
Sbjct: 212 SAMPVYLLFKNIIDSQSNESLSEASRPSKSFDIIDCCSAPGNKTMQAAEYIKGRGKVFAF 271

Query: 270 DVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328
           + +++R E L+  + +         +  D       +  +     A  S +GT   +   
Sbjct: 272 EKNQQRFELLKERVQKYGFEQVISCLNEDFLSVDVTQYPNVEYFVADPSCSGTGMLNHIY 331

Query: 329 LW----------TRDTDDIVKSACFQRKLLLQGISFVKPGGIVV---------------- 362
                        ++           +++     + +K    +V                
Sbjct: 332 FDEDQIQLEEENLQNQQTKKSFMERTQQIFESYDNKMKQ--RIVGLGQFQLKILNKLATF 389

Query: 363 -------FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
                  +S CS+ +Q++E+VV K L+ +     +        +             IR 
Sbjct: 390 PSIKAFSYSTCSIHQQENEDVVFKFLQENKSFQLVEACPQWKTRGFKTKNLPDGNKCIRF 449

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P             DGFF    ++ 
Sbjct: 450 NP--------FEDKSDGFFVALFQKK 467


>gi|260425570|ref|ZP_05779550.1| transcription antitermination factor NusB [Citreicella sp. SE45]
 gi|260423510|gb|EEX16760.1| transcription antitermination factor NusB [Citreicella sp. SE45]
          Length = 163

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS------QRDQILVRAIVN 54
           MKS   +RL +   L  +     S+  + +          +         D  L   I +
Sbjct: 18  MKS--ASRLYAVQALYQMEAAGQSVERVQNEFVDHRFGAEIEEGVEMLDGDVGLFGRITS 75

Query: 55  VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             + +  +ID + D  L     + R   +L+ L R + A+ +  D     V+   V+ A+
Sbjct: 76  AAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVDSDTPPRVVISEYVDVAR 135

Query: 113 RDKENRHFAKLVNSILRRV 131
                    + VN++L  +
Sbjct: 136 AFFPEGREPQFVNAVLDHM 154


>gi|70726392|ref|YP_253306.1| transcription antitermination protein NusB [Staphylococcus
           haemolyticus JCSC1435]
 gi|119390830|sp|Q4L6M5|NUSB_STAHJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68447116|dbj|BAE04700.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 128

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +       L   D   +  +V       P 
Sbjct: 2   SRKESRMQAFQTLFQLEMKDTELTINEAINFIKDDEPEL---DFDFIHWLVTGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   SL R   + + +LR++  ++L+ D     +++ AVE AK+  ++ H+ 
Sbjct: 59  LDDTIKPHLKDWSLQRLLKTDRIILRMATFELLHSDTPPKVIINEAVELAKQFSDDEHYK 118

Query: 122 KLVNSILRR 130
             +N +L  
Sbjct: 119 -FINGVLSN 126


>gi|325194265|emb|CCA28236.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 173

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 23/152 (15%)

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT----------RDTDDIVKSACFQRKLLL 349
                 L+D VLVDA C+  G+IR    +              +   + +    Q  L+ 
Sbjct: 32  WAFDSMLYDKVLVDAECTHDGSIRHLQKLKTLEAWTNYMEKYLNATQLERIRDLQHHLIR 91

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409
            G   +K GGI+++S CSL  + +E++V+  L  +P   +L  ++       D       
Sbjct: 92  NGFRLLKVGGIMIYSTCSLSIRQNEDIVRDFLSETPN-AKLFAMHPHDSLPCDPGSL--- 147

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           EG +R +P              G F   ++++
Sbjct: 148 EGTLRFSP---------RRNTSGLFIARIQKV 170


>gi|306834238|ref|ZP_07467357.1| transcription antitermination factor NusB [Streptococcus bovis ATCC
           700338]
 gi|304423587|gb|EFM26734.1| transcription antitermination factor NusB [Streptococcus bovis ATCC
           700338]
          Length = 142

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 4/124 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFL 60
            S  + R  +   L  +      L         D         D    +  +V       
Sbjct: 7   NSRRDLRERAFQALFSLEFGGEYLAAAQFAYTYDKTIEEDDTIDVPVFLLNLVKGVQDLK 66

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
             ID  ++  L    SL R   + + LLR+ + +I Y  +      V+  +E AK+  ++
Sbjct: 67  FEIDQQIETHLKSGWSLERLTLTDRALLRLGLYEIKYFEETPGRVAVNEIIEIAKKYSDD 126

Query: 118 RHFA 121
               
Sbjct: 127 TSAK 130


>gi|203284032|ref|YP_002221772.1| N-utilization substance protein B [Borrelia duttonii Ly]
 gi|201083475|gb|ACH93066.1| N-utilization substance protein B [Borrelia duttonii Ly]
          Length = 146

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+++   +  +     +   + D+   +     L    ++    +VN T   L
Sbjct: 3   MDLRHKARVLAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDLKLFYSVLVNGTYDNL 62

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117
             ID ++  + L   L R       +LR+SV  + +  LDV    ++D A+  AK+   N
Sbjct: 63  ESIDKLISGISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIAKKY-GN 121

Query: 118 RHFAKLVNSILRRVSREK 135
           ++  K VN IL  + ++ 
Sbjct: 122 KNSDKFVNGILDALLKDM 139


>gi|114570081|ref|YP_756761.1| transcription antitermination protein NusB [Maricaulis maris MCS10]
 gi|119390782|sp|Q0APG4|NUSB_MARMM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114340543|gb|ABI65823.1| NusB antitermination factor [Maricaulis maris MCS10]
          Length = 160

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           +   L  +    +  + ++                  + D+    ++V   +     +D 
Sbjct: 24  AVQALYQMEIGGLGASAVIREFREHRFGACGEAPEFVEADEDFFESLVAGVVERQADVDP 83

Query: 66  VLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
            +D +L     L R   +++ +LRV   ++LY  DV    V+D  +E A    E     K
Sbjct: 84  AMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAE-PK 142

Query: 123 LVNSILRRV 131
            +N+   R 
Sbjct: 143 FINAAFDRC 151


>gi|121595089|ref|YP_986985.1| NusB antitermination factor [Acidovorax sp. JS42]
 gi|166215657|sp|A1W9I4|NUSB_ACISJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120607169|gb|ABM42909.1| NusB antitermination factor [Acidovorax sp. JS42]
          Length = 177

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L   +         +D+   D       + D     A+++  +     +D +
Sbjct: 38  AREFALQALYQHLVGGNDA-TAIDVFTRD--LSGFHKADAAHYDALLHGCITTAQYMDEL 94

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           +   L   +         ++ + V +  +  DV    V++  +E AK         
Sbjct: 95  IAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHK 150


>gi|260767831|ref|ZP_05876766.1| transcription termination protein NusB [Vibrio furnissii CIP
           102972]
 gi|260617340|gb|EEX42524.1| transcription termination protein NusB [Vibrio furnissii CIP
           102972]
 gi|315179339|gb|ADT86253.1| N utilization substance protein B [Vibrio furnissii NCTC 11218]
          Length = 156

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50
            +  NAR  +   +      + ++  + +       +               + D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKDNVATIEEQFLSGGKYDEEEHHASEPALAAPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            ++   +     +D+ L   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLAGVVLNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|238918991|ref|YP_002932505.1| transcription antitermination factor NusB, [Edwardsiella ictaluri
           93-146]
 gi|259514829|sp|C5BCH6|NUSB_EDWI9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238868559|gb|ACR68270.1| transcription antitermination factor NusB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 139

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   + + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQISK---NDIADVEYQFLSEQDVKDVDVNYFRELLSGVASNAEYLDGLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LRVS+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PVLSRQLDELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAK-IFGAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +V+ +
Sbjct: 127 LDKVAPQ 133


>gi|15924514|ref|NP_372048.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927105|ref|NP_374638.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus N315]
 gi|21283206|ref|NP_646294.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486361|ref|YP_043582.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57650481|ref|YP_186410.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus COL]
 gi|88195331|ref|YP_500135.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148268009|ref|YP_001246952.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394076|ref|YP_001316751.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221641|ref|YP_001332463.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156979843|ref|YP_001442102.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|221140055|ref|ZP_03564548.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253732178|ref|ZP_04866343.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253733226|ref|ZP_04867391.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006311|ref|ZP_05144912.2| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257425650|ref|ZP_05602074.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428311|ref|ZP_05604709.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430948|ref|ZP_05607328.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433637|ref|ZP_05609995.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436550|ref|ZP_05612594.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793601|ref|ZP_05642580.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9781]
 gi|258411099|ref|ZP_05681379.1| transcription antitermination protein NusB [Staphylococcus aureus
           A9763]
 gi|258420097|ref|ZP_05683052.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9719]
 gi|258423178|ref|ZP_05686071.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9635]
 gi|258437357|ref|ZP_05689341.1| transcription antitermination protein NusB [Staphylococcus aureus
           A9299]
 gi|258443563|ref|ZP_05691902.1| transcription antitermination protein NusB [Staphylococcus aureus
           A8115]
 gi|258446770|ref|ZP_05694924.1| transcription antitermination protein NusB [Staphylococcus aureus
           A6300]
 gi|258448684|ref|ZP_05696796.1| transcription antitermination protein NusB [Staphylococcus aureus
           A6224]
 gi|258451182|ref|ZP_05699217.1| transcription antitermination protein NusB [Staphylococcus aureus
           A5948]
 gi|258453501|ref|ZP_05701479.1| transcription antitermination protein NusB [Staphylococcus aureus
           A5937]
 gi|262051191|ref|ZP_06023415.1| transcription antitermination protein NusB [Staphylococcus aureus
           930918-3]
 gi|269203154|ref|YP_003282423.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893026|ref|ZP_06301260.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8117]
 gi|282911163|ref|ZP_06318965.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914332|ref|ZP_06322118.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916795|ref|ZP_06324553.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus D139]
 gi|282919301|ref|ZP_06327036.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924626|ref|ZP_06332294.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C101]
 gi|282924773|ref|ZP_06332440.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9765]
 gi|282928996|ref|ZP_06336583.1| transcription antitermination factor NusB [Staphylococcus aureus
           A10102]
 gi|283770601|ref|ZP_06343493.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus H19]
 gi|284024584|ref|ZP_06378982.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 132]
 gi|293503407|ref|ZP_06667254.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510423|ref|ZP_06669129.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus M809]
 gi|293530963|ref|ZP_06671645.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295406647|ref|ZP_06816452.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8819]
 gi|296275119|ref|ZP_06857626.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297207756|ref|ZP_06924191.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297245770|ref|ZP_06929635.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8796]
 gi|300911837|ref|ZP_07129280.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304380887|ref|ZP_07363547.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|54037923|sp|P65578|NUSB_STAAN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54037924|sp|P65579|NUSB_STAAW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041674|sp|P65577|NUSB_STAAM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56749194|sp|Q6G941|NUSB_STAAS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71153022|sp|Q5HFP7|NUSB_STAAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390828|sp|Q2FY45|NUSB_STAA8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215722|sp|A7X2Q3|NUSB_STAA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|172048899|sp|A6QH69|NUSB_STAAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035909|sp|A6U1Z6|NUSB_STAA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035910|sp|A5IT53|NUSB_STAA9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13701323|dbj|BAB42617.1| SA1355 [Staphylococcus aureus subsp. aureus N315]
 gi|14247295|dbj|BAB57686.1| N utilization substance protein B homolog [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204646|dbj|BAB95342.1| MW1477 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244804|emb|CAG43254.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57284667|gb|AAW36761.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202889|gb|ABD30699.1| N utilization substance protein B, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741078|gb|ABQ49376.1| NusB antitermination factor [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946528|gb|ABR52464.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150374441|dbj|BAF67701.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156721978|dbj|BAF78395.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253723967|gb|EES92696.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253728766|gb|EES97495.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257271344|gb|EEV03490.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275152|gb|EEV06639.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278378|gb|EEV09014.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281730|gb|EEV11867.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283901|gb|EEV14024.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787573|gb|EEV25913.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9781]
 gi|257840249|gb|EEV64713.1| transcription antitermination protein NusB [Staphylococcus aureus
           A9763]
 gi|257843808|gb|EEV68202.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9719]
 gi|257846628|gb|EEV70649.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9635]
 gi|257848562|gb|EEV72550.1| transcription antitermination protein NusB [Staphylococcus aureus
           A9299]
 gi|257850969|gb|EEV74912.1| transcription antitermination protein NusB [Staphylococcus aureus
           A8115]
 gi|257854345|gb|EEV77294.1| transcription antitermination protein NusB [Staphylococcus aureus
           A6300]
 gi|257857962|gb|EEV80851.1| transcription antitermination protein NusB [Staphylococcus aureus
           A6224]
 gi|257861237|gb|EEV84050.1| transcription antitermination protein NusB [Staphylococcus aureus
           A5948]
 gi|257864232|gb|EEV86982.1| transcription antitermination protein NusB [Staphylococcus aureus
           A5937]
 gi|259160828|gb|EEW45848.1| transcription antitermination protein NusB [Staphylococcus aureus
           930918-3]
 gi|262075444|gb|ACY11417.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269941015|emb|CBI49399.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282313461|gb|EFB43856.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317111|gb|EFB47485.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319282|gb|EFB49634.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus D139]
 gi|282321513|gb|EFB51838.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324858|gb|EFB55168.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282589403|gb|EFB94494.1| transcription antitermination factor NusB [Staphylococcus aureus
           A10102]
 gi|282592780|gb|EFB97786.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9765]
 gi|282764344|gb|EFC04470.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8117]
 gi|283460748|gb|EFC07838.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus H19]
 gi|283470803|emb|CAQ50014.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ST398]
 gi|285817207|gb|ADC37694.1| Transcription termination protein NusB [Staphylococcus aureus
           04-02981]
 gi|290920231|gb|EFD97297.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095073|gb|EFE25338.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466787|gb|EFF09307.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus M809]
 gi|294968394|gb|EFG44418.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8819]
 gi|296887773|gb|EFH26671.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297177421|gb|EFH36673.1| transcription antitermination factor NusB [Staphylococcus aureus
           A8796]
 gi|298694807|gb|ADI98029.1| N utilization substance protein B [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886083|gb|EFK81285.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302333201|gb|ADL23394.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|302751356|gb|ADL65533.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340614|gb|EFM06548.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829914|emb|CBX34756.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129802|gb|EFT85792.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|320140590|gb|EFW32444.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|323440422|gb|EGA98134.1| transcription antitermination protein NusB [Staphylococcus aureus
           O11]
 gi|323443196|gb|EGB00814.1| transcription antitermination protein NusB [Staphylococcus aureus
           O46]
 gi|329314202|gb|AEB88615.1| N utilization substance protein B -like protein [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329727098|gb|EGG63554.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329728323|gb|EGG64760.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329730817|gb|EGG67195.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 129

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +       L   D   +  +V+      P 
Sbjct: 2   SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDL---DFEFIHWLVSGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   ++ R   + + +LR++  +IL+ D     V++ AVE  K+  ++ H+ 
Sbjct: 59  LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRR 130
             +N +L  
Sbjct: 119 -FINGVLSN 126


>gi|118470676|ref|YP_887353.1| transcription antitermination protein NusB [Mycobacterium smegmatis
           str. MC2 155]
 gi|166215698|sp|A0QWR5|NUSB_MYCS2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118171963|gb|ABK72859.1| transcription antitermination factor NusB [Mycobacterium smegmatis
           str. MC2 155]
          Length = 160

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL     + ++   + D     +  +            +          I
Sbjct: 10  RHQARKRAVDLLFEAEARGLTAEAVADSRAALAEDQDDVAPLNPYTVLVARGVTEHAAHI 69

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++   L   +L R     + +LRV+V ++L+  DV +   VD AVE AK         
Sbjct: 70  DDLISAHLQGWTLERLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKE-LSTDESP 128

Query: 122 KLVNSILRRVS 132
             VN +L +V 
Sbjct: 129 GFVNGVLGQVM 139


>gi|261346385|ref|ZP_05974029.1| transcription antitermination factor NusB [Providencia rustigianii
           DSM 4541]
 gi|282565703|gb|EFB71238.1| transcription antitermination factor NusB [Providencia rustigianii
           DSM 4541]
          Length = 138

 Score = 79.6 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +         +  +      +   + +S  D    R +++       ++D ++ 
Sbjct: 11  ECAVQAIYSWQLSGNPIAEVEYEFLAE---QDMSDVDVNYFRELISGIASNATKLDQLMS 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LRVS+ ++ Y  DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRVSMYELSYRQDVPFKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|288906084|ref|YP_003431306.1| antitermination protein NusB [Streptococcus gallolyticus UCN34]
 gi|306832123|ref|ZP_07465277.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979049|ref|YP_004288765.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732810|emb|CBI14386.1| putative antitermination protein NusB [Streptococcus gallolyticus
           UCN34]
 gi|304425562|gb|EFM28680.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178977|emb|CBZ49021.1| transcription antitermination factor NusB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 142

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 4/124 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFL 60
            S  + R  +   L  +      L         D         D    +  +V     F 
Sbjct: 7   NSRRDLRERAFQALFSLEFGGEYLAAAQFAYTYDKTIEEDDTIDVPVFLLNLVKGVQDFQ 66

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
             ID  ++  L    SL R   + + LLR+ + +I Y  +      V+  +E AK+  ++
Sbjct: 67  SEIDQQIETHLKSGWSLERLTLTDRTLLRLGLYEIKYFEETPGRVAVNEIIEIAKKYSDD 126

Query: 118 RHFA 121
               
Sbjct: 127 TSAK 130


>gi|311894818|dbj|BAJ27226.1| putative N utilization substance protein B homolog [Kitasatospora
           setae KM-6054]
          Length = 145

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVT 56
           M +    AR  +  +L     + +S   +L      +          +       +V   
Sbjct: 1   MATARSKARTRAFQILFEADHRGVSPERVLADWIARARDPRPDEGIPQVAEYTMQLVEGY 60

Query: 57  LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
            +    ID ++       ++ R   + + ++R+   ++++ D   D  V+D AVE AK  
Sbjct: 61  AQHARTIDDLISTYAVGWTIDRMPIADRNVIRLGAYELIWEDGTPDAVVLDEAVEIAKEF 120

Query: 115 KENRHFA 121
             +   A
Sbjct: 121 STDESPA 127


>gi|302766075|ref|XP_002966458.1| hypothetical protein SELMODRAFT_227613 [Selaginella moellendorffii]
 gi|300165878|gb|EFJ32485.1| hypothetical protein SELMODRAFT_227613 [Selaginella moellendorffii]
          Length = 423

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 23/143 (16%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS---------ACFQRKLLLQGISFVKP 357
           +D VLVDA C+  G+++               +             Q +LL  G   +K 
Sbjct: 286 YDKVLVDAECTHDGSLKHICKFEQWGWETFEKRFFNSERISTITNLQLRLLSNGFRLLKQ 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S CS     +E V+++ L + P        ++  W      +       +R  P
Sbjct: 346 GGTLVYSTCSFTYDQNEGVLKQFLAAHPDAEVREIKSAKSWPCTMTGL------CLRFDP 399

Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440
                   + S  +G F   + +
Sbjct: 400 --------LVSNTNGQFVAKITK 414


>gi|261337964|ref|ZP_05965848.1| transcription antitermination factor NusB [Bifidobacterium gallicum
           DSM 20093]
 gi|270277459|gb|EFA23313.1| transcription antitermination factor NusB [Bifidobacterium gallicum
           DSM 20093]
          Length = 149

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  + + L     K   +  LL     +   +            IV         +D +
Sbjct: 6   ARKRALNTLYEADEKDQDIKSLLQERIVEPGAQTPLPE---YAIEIVEGVADNRKDLDRI 62

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           ++       + R     + +LR++  +I++ D + D   +D A+  AK   ++    
Sbjct: 63  INEHSTGWKVWRMPVIDRNILRIAAWEIIHNDEIPDKVAIDEALNLAKTLSDDESLG 119


>gi|148698677|gb|EDL30624.1| NOL1/NOP2/Sun domain family, member 4 [Mus musculus]
          Length = 415

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 104/283 (36%), Gaps = 29/283 (10%)

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQ 235
             K + E+      ++               +   P    G      +++ DA++ +PV 
Sbjct: 139 HQKLEPESGLSPTPSLDCSPNLRCFTFSRGDVSRFPPARLGSLGLMDYYLMDAASLLPVL 198

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDI 293
             G  +  +VLDLCAAPGGKT  L+ +G    + A D+S  R  +L+  L          
Sbjct: 199 ALGLQHGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRTGRLQKVLHSYVPQDIRE 258

Query: 294 IEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACF 343
                      + +        D VLVD PC++          ++       +       
Sbjct: 259 GNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFQRSRKKERQMLPML 318

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWK 399
           Q +LL  G+   KPGG VV+S CSL    +E VVQ  +        I V++  L+     
Sbjct: 319 QVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKL 378

Query: 400 SID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +D      S +    + P+++             +   L RL
Sbjct: 379 FMDTFCFFPSCQVGELVIPNLMVNFGP-------MYFCKLHRL 414


>gi|327392955|dbj|BAK10377.1| N utilization substance protein B NusB [Pantoea ananatis AJ13355]
          Length = 139

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      ++S   + D+EY   A + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDITYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRISLYELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L +   +    
Sbjct: 127 LDKAGPQIRPQ 137


>gi|325963392|ref|YP_004241298.1| transcription antitermination factor NusB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469479|gb|ADX73164.1| transcription antitermination factor NusB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 136

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ +S   +L     +   ++++         I+   +   
Sbjct: 1   MSARGKARNRALDILFEAEQRSVSAFDVL-RARREKTDQIINP----YTLEIIEGVVSQQ 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID  L+      SL R     + +LR+   ++LY  DV D   V  AV  AK      
Sbjct: 56  TAIDEFLETYSQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKT-LSTD 114

Query: 119 HFAKLVNSILRRVSR 133
              + +N +L R+ +
Sbjct: 115 ESPQFINGLLGRLQQ 129


>gi|326799647|ref|YP_004317466.1| Fmu (Sun) domain protein [Sphingobacterium sp. 21]
 gi|326550411|gb|ADZ78796.1| Fmu (Sun) domain protein [Sphingobacterium sp. 21]
          Length = 390

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 85/281 (30%), Gaps = 40/281 (14%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--RLKELPESIVSLPGFAEGV--WWV 225
            +      + L ++   E+   K             R     E+   L  + E    + V
Sbjct: 137 KSLFRQPKLFLRLRPGAESIVLKCLERNQINYERIGRSCLALENGTKLDQYEELRGTYEV 196

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRL----EKL 279
           QD S+      F         D CAA GGK            +   DV    L    E+ 
Sbjct: 197 QDRSSQQTGDYFEAKAGEKWWDACAASGGKSLLLMQTYPRVNLLVSDVRSSILRNLDERF 256

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
                + +      +  D         FD +++DAPCS +GT  R P+++       +  
Sbjct: 257 EKAAIKDYRRKIIDLTKDPSIILGNDTFDGIILDAPCSGSGTWGRTPEMMQQFSEGKLCY 316

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
               QR++L   +  +K    +++  CS+   ++EE V        + +E   L   Y  
Sbjct: 317 FVDLQRRILQNVVQHLKVDKPLIYITCSVYGAENEEQV-AFAEKLGLRLERATLLKGYEN 375

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             D                               F   L +
Sbjct: 376 RADT-----------------------------MFIARLVK 387


>gi|269103251|ref|ZP_06155948.1| transcription termination protein NusB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163149|gb|EEZ41645.1| transcription termination protein NusB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 152

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 15/144 (10%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQI 47
           MK     NAR  +   +      +  +  +         F                 D  
Sbjct: 1   MKPAARRNARQFAVQAIYSWQITQGDIADIEQHFLSGDKFEEEEYQAEAPVLAAPHTDVN 60

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDL 106
             R +    +     +D+ +   L   L         LLR+++ ++    DV    V++ 
Sbjct: 61  YFRDLFTGVVLNHQDLDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINE 120

Query: 107 AVEQAKRDKENRHFAKLVNSILRR 130
           A+E AK         K VN +L +
Sbjct: 121 AIELAK-LFGAEDSHKFVNGVLDK 143


>gi|41407196|ref|NP_960032.1| transcription antitermination protein NusB [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118463415|ref|YP_882592.1| transcription antitermination protein NusB [Mycobacterium avium
           104]
 gi|254775857|ref|ZP_05217373.1| transcription antitermination protein NusB [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|81571413|sp|Q741J2|NUSB_MYCPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215696|sp|A0QI54|NUSB_MYCA1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|41395547|gb|AAS03415.1| NusB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164702|gb|ABK65599.1| transcription antitermination factor NusB [Mycobacterium avium 104]
          Length = 156

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 7/138 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M         AR  +  LL     + +S   ++D+  G +         Q    A+    
Sbjct: 1   MSKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGV 60

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                 ID ++   L   +L R     + +LRV+V ++LY  DV +   VD AV+ AK  
Sbjct: 61  GDHAAHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKE- 119

Query: 115 KENRHFAKLVNSILRRVS 132
                    VN +L +V 
Sbjct: 120 LSTDDSPGFVNGVLGQVM 137


>gi|163941940|ref|YP_001646824.1| transcription antitermination protein NusB [Bacillus
           weihenstephanensis KBAB4]
 gi|229013400|ref|ZP_04170537.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
 gi|229061872|ref|ZP_04199202.1| N utilization substance protein B [Bacillus cereus AH603]
 gi|229620056|sp|A9VGW4|NUSB_BACWK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|163864137|gb|ABY45196.1| NusB antitermination factor [Bacillus weihenstephanensis KBAB4]
 gi|228717433|gb|EEL69101.1| N utilization substance protein B [Bacillus cereus AH603]
 gi|228747812|gb|EEL97678.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
          Length = 130

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 11/133 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    AR  +   L  +           ++    +             + ++V   +  
Sbjct: 1   MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVDN 53

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              IDA +   L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    +
Sbjct: 54  KEEIDAAIRQNLKKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTF-GD 112

Query: 118 RHFAKLVNSILRR 130
               + +N +L  
Sbjct: 113 EESRRFINGVLSN 125


>gi|320352895|ref|YP_004194234.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032]
 gi|320121397|gb|ADW16943.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032]
          Length = 140

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 4/125 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M     +R ++   L     +  S     +            +SQ+     R ++    R
Sbjct: 1   MGLRRKSRELALQFLFSHDFQERSCAPDDVARDLDMFCQLFDVSQKALPYGRELILGICR 60

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
               IDA+L     +  + R     + +LR++V ++ + D       ++ A+E AKR   
Sbjct: 61  HREEIDALLATHSHNWRVERMSLVDRNILRIAVFEMRHCDQAPAQVAINEALEIAKRYSI 120

Query: 117 NRHFA 121
               +
Sbjct: 121 GESVS 125


>gi|326329789|ref|ZP_08196109.1| transcription antitermination factor NusB [Nocardioidaceae
           bacterium Broad-1]
 gi|325952375|gb|EGD44395.1| transcription antitermination factor NusB [Nocardioidaceae
           bacterium Broad-1]
          Length = 137

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +  LL     + +S   LLD +  +                IV   +    
Sbjct: 6   TARTKARKRALDLLFAAEARGLSAGDLLDQQIREGEVPNNP-----FTVKIVRGVVAEAE 60

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           RIDA++       +L R     + +LR+ V ++L  DVA    +  A         +   
Sbjct: 61  RIDALISAFAKDWTLARMPAVDRNVLRIGVWELLDGDVASEVAISEATALVTELSTDDSP 120

Query: 121 A 121
           +
Sbjct: 121 S 121


>gi|169629920|ref|YP_001703569.1| transcription antitermination protein NusB [Mycobacterium abscessus
           ATCC 19977]
 gi|169241887|emb|CAM62915.1| Probable transcription antitermination factor NusB [Mycobacterium
           abscessus]
          Length = 173

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL     + ++   + D     +A +           ++ +        I
Sbjct: 28  RRKARKRAVDLLFEAEAREMTAAGVADERRALAASKPDIDPLNPYTVSVAHGVTEHAAHI 87

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++   L   +L R     + +LRV+V ++L+  DV +   VD AVE AK+   +   A
Sbjct: 88  DELISSHLQGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAKQLSTDESPA 147


>gi|119962399|ref|YP_948012.1| transcription antitermination factor NusB [Arthrobacter aurescens
           TC1]
 gi|166215660|sp|A1R700|NUSB_ARTAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119949258|gb|ABM08169.1| transcription antitermination factor NusB [Arthrobacter aurescens
           TC1]
          Length = 136

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L    ++ +S     D          L          IV   +   
Sbjct: 1   MSARGKARSRALEVLFEAEQRSVS---AFDAMTARREKTDLVIN--PYTVEIVEGVVSMQ 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             ID  L       +L R     + +LR+   ++LY D V D   V  AV  AK    + 
Sbjct: 56  ATIDEFLQTYAQGWTLERMPSVDRIILRIGAWELLYNDEVPDGVAVSEAVALAKTMSTDE 115

Query: 119 HFA 121
             A
Sbjct: 116 SPA 118


>gi|85707944|ref|ZP_01039010.1| transcription termination factor [Erythrobacter sp. NAP1]
 gi|85689478|gb|EAQ29481.1| transcription termination factor [Erythrobacter sp. NAP1]
          Length = 155

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 13/133 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ----------ILVRA 51
           ++   ARL +   L     +  +L  LLD  +     R +   D                
Sbjct: 8   QARSTARLAAVQALYQQQMEGTALNKLLDEFHQHRLGREVDDEDHEGEVYADAEVEFFDD 67

Query: 52  IVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAV 108
           IV         ID +L   L     L R   ++ Q+LR    +++   DV   + +   V
Sbjct: 68  IVRGVDARRDEIDEILTARLAQGWTLMRLDKTMLQILRAGAYELIARADVPRASAITEYV 127

Query: 109 EQAKRDKENRHFA 121
           + AK   ++R   
Sbjct: 128 DVAKAFFDDREAK 140


>gi|308185886|ref|YP_003930017.1| N utilization substance protein B [Pantoea vagans C9-1]
 gi|308056396|gb|ADO08568.1| N utilization substance protein B [Pantoea vagans C9-1]
          Length = 139

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      ++S   + D+EY   A + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDITYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRISLYELSKRDDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L +   +    
Sbjct: 127 LDKAGPQIRPN 137


>gi|294886901|ref|XP_002771910.1| ribosomal RNA small subunit methyltransferase B, putative
           [Perkinsus marinus ATCC 50983]
 gi|239875710|gb|EER03726.1| ribosomal RNA small subunit methyltransferase B, putative
           [Perkinsus marinus ATCC 50983]
          Length = 402

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 119/400 (29%), Gaps = 71/400 (17%)

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167
              A      R   ++   +        I    R   +  + + F E        E +L 
Sbjct: 5   HPAASGIVGYRFPPEIQQFLDDNHIPLWIYDPSRQPIVRTVRQRFDEASIEKELLEEILQ 64

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG-IRLKELPESIVSLPGFAEGVWWVQ 226
             D   +    +  ++     W   L A                 +  L  +  G  +  
Sbjct: 65  ARDLPAAESIQEEPLRVTPIEWLEPLTAARFGPSPKFYSIPTATQMSRLNLYKGGHLFGL 124

Query: 227 DASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLR 280
           D S++  V       G     +VLDLC APG K      +  G++V  +DVS+ RL   R
Sbjct: 125 DVSSASAVYALLGESGPEPGSAVLDLCCAPGTKLLMLSELCPGSRVAGIDVSRDRLMVCR 184

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL---------------------------------- 306
             L +   +  ++   D    C + +                                  
Sbjct: 185 SLLTKYGAHNVELYHGDGRYVCSRPMERLTVAKRKSRGRKRQRRGSPEDPPPSSTTLEAE 244

Query: 307 -FDAVLVDAPCSSTGTIRRHPDV--------------LWTRDTDDIVKSA--------CF 343
            +D VL DA C+  G+++                      +                   
Sbjct: 245 SWDLVLCDAECTHDGSVKHMLKHLEASSRDSSGVVGFWQQQSERSHPMPWLDKLGELESL 304

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           QR L+      +KPGG +V+S CS+ ++  E +V+ +L        L PL     K    
Sbjct: 305 QRALITAAFDALKPGGCMVYSTCSMARRQDENIVEYLLE-HRDAAALCPLPFDLAKMPCR 363

Query: 404 AMALSPEGWI---RITPDMLEKIDGVSSGMDGFFAVALRR 440
           A  +   G     R  P   +     +    G F   +R+
Sbjct: 364 AAMMDNTGAACACRFDPADADVARVDAG---GLFIARIRK 400


>gi|212702193|ref|ZP_03310321.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
 gi|212674398|gb|EEB34881.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
          Length = 157

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 11/139 (7%)

Query: 1   MKSGMNA-----RLVSSHLLSCV-MRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAI 52
           M  G +A     R  +  +L  +      SL  +          +   + +        +
Sbjct: 1   MSKGKSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWDL 60

Query: 53  VNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110
           V         +D  +     +  + R       LLR+++ ++LY  DV     ++ A+E 
Sbjct: 61  VQGVWSRRDELDKTISRFSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEALEL 120

Query: 111 AKRDKENRHFAKLVNSILR 129
            ++     +    VN IL 
Sbjct: 121 TRQF-GEDNATSFVNGILD 138


>gi|217976846|ref|YP_002360993.1| NusB antitermination factor [Methylocella silvestris BL2]
 gi|217502222|gb|ACK49631.1| NusB antitermination factor [Methylocella silvestris BL2]
          Length = 154

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 12/141 (8%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAI 52
           M +      ARL +   L  +      L               +        +    + I
Sbjct: 1   MSNADGRSAARLAAVQALYQMDVTDKGLKETCAEFESFWLGGEVEGQLYKPAELAFFKDI 60

Query: 53  VNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
           ++  L     ID  +D  L     L R    L+ +LR    ++    DV     +   V+
Sbjct: 61  LSGVLADQGPIDRAIDQTLVEGWPLVRIDSVLRAILRAGAYELKKRTDVPARVAIKEYVD 120

Query: 110 QAKRDKENRHFAKLVNSILRR 130
            A      R  + +VN++L  
Sbjct: 121 VAGAFF-EREESGMVNAVLDH 140


>gi|83941142|ref|ZP_00953604.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36]
 gi|83846962|gb|EAP84837.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36]
          Length = 159

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     S   +               + +   D      ++  
Sbjct: 15  MKS--ASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGASYDGQEMIDGDIRHFADLLET 72

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +   ID + D  L    ++ R   +L+ L R + A++   +     V++  V+ A+ 
Sbjct: 73  AVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELRAQETPPRVVINEYVDVARA 132

Query: 114 DKENRHFAKLVNSILRRV 131
             E     K VN++L  +
Sbjct: 133 FFEGGDEPKFVNAVLDHM 150


>gi|126729172|ref|ZP_01744986.1| transcription antitermination factor NusB [Sagittula stellata E-37]
 gi|126710162|gb|EBA09214.1| transcription antitermination factor NusB [Sagittula stellata E-37]
          Length = 168

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 9/139 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-------DSAFRLLSQRDQILVRAIVN 54
           K    +RL +   L  + +  I +  +             D     +   D  L   ++ 
Sbjct: 21  KMRSASRLYAVQALYQMEQSGIPVDKVRREFLEFRFGAVDDDDGTEMLDGDVSLFSHVIE 80

Query: 55  VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             L +  ++D + D  L     + R    L+ L R + A+++  D     V+   V+ A 
Sbjct: 81  EALNWQAKVDQMTDRALVAKWPIARIDPVLRALFRAAGAELVATDTPPKVVIVEYVDVAV 140

Query: 113 RDKENRHFAKLVNSILRRV 131
               +   AK VN++L  +
Sbjct: 141 AFYPDGKEAKFVNAVLDHM 159


>gi|119627322|gb|EAX06917.1| hCG2031650, isoform CRA_f [Homo sapiens]
 gi|194379028|dbj|BAG58065.1| unnamed protein product [Homo sapiens]
          Length = 335

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 75  ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 134

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 135 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 194

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 195 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 254

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 255 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 314

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   +RRL 
Sbjct: 315 VIPNLMANFGP-------MYFCKMRRLT 335


>gi|113460974|ref|YP_719041.1| transcription antitermination protein NusB [Haemophilus somnus
           129PT]
 gi|119390774|sp|Q0I3N5|NUSB_HAES1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112823017|gb|ABI25106.1| N utilization substance protein B [Haemophilus somnus 129PT]
          Length = 144

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      + +    ++L +       +   D    R +   T+  + 
Sbjct: 9   SPRRRARECAVQTLYSWAISK-NAPEEIELNFIVDQDNEMKGVDMPYFRKLFRQTVDHVE 67

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D+++   L             +LR++V ++ + LDV    V++ A+E AK        
Sbjct: 68  IVDSIMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAK-VFGAEES 126

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 127 HKYINGVLDK 136


>gi|255642235|gb|ACU21382.1| unknown [Glycine max]
          Length = 392

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 21/145 (14%)

Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTR--------DTDDIVKSACFQRKLLLQGISFVKP 357
           +D VLVDA C+  G+++       W          D +        Q  LL  G   +  
Sbjct: 259 YDKVLVDAECTHDGSVKHIQKFEDWGWGTLQRRVLDAERTDDLHTLQLNLLTNGFRLLNV 318

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S CSL    +E+VV++ L+ +          ++ W      +  +         
Sbjct: 319 GGSLVYSTCSLTIAQNEDVVEQFLKENETAELTEIDAASDWPCKGGRIPKT--------- 369

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442
               + D ++S   G F     +++
Sbjct: 370 ---WRFDPLTSQTSGLFVAKFTKVV 391


>gi|19074454|ref|NP_585960.1| NOP2-LIKE NUCLEOLAR PROTEIN [Encephalitozoon cuniculi GB-M1]
 gi|19069096|emb|CAD25564.1| NOP2-LIKE NUCLEOLAR PROTEIN [Encephalitozoon cuniculi GB-M1]
          Length = 364

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 19/252 (7%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L+       G+      ++IV   G+  G + +Q+ S+ +P  +        V+D C+AP
Sbjct: 128 LDYEKSCVDGVYKILDSKNIVFSEGYKNGKFVIQNISSCLPAHILDPEEGSRVIDTCSAP 187

Query: 253 GGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           G KT+    ++ +  K+ A + SK R E LR  L +L +   +++E D  +  P+     
Sbjct: 188 GNKTSQLAMIMRNTGKIYAFERSKNRAETLRAQLFKLGVSNTEVVEDDFMNANPEDFEGI 247

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
             +    S +G+      + +  D + I     FQ +++   + F +P   +V+S CS  
Sbjct: 248 RYILCDPSCSGSGMH---LGYKMDKERIEGLKSFQIEIVRHALRF-RPE-KLVYSVCSDH 302

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           +++ EEVV+++LRSS   +E + +  +   S   + +       R             SG
Sbjct: 303 REEGEEVVEEILRSSEYELENISMFWSSAHSSGFSFSQDVVRCRR-----------DESG 351

Query: 430 MDGFFAVALRRL 441
             GFF     R 
Sbjct: 352 AIGFFIALFVRK 363


>gi|225869862|ref|YP_002745809.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. equi 4047]
 gi|254772656|sp|C0MBK2|NUSB_STRE4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225699266|emb|CAW92587.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. equi 4047]
          Length = 150

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 9/126 (7%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTLR 58
           S  + R  +   L  +      L         D        +        +  +VN  + 
Sbjct: 8   SRRDLRERAFQALFAMEMGGDFLPA--SQFAYDYDKEAADDKQPSELPVFLLNLVNGVMD 65

Query: 59  FLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDK 115
               +D V+   L    S+ R     + +LR+ + ++ L+ +  D   ++  +E AK+  
Sbjct: 66  HKAELDEVIKKNLKTSWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYS 125

Query: 116 ENRHFA 121
           ++    
Sbjct: 126 DDTSAK 131


>gi|83955701|ref|ZP_00964281.1| transcription antitermination factor NusB [Sulfitobacter sp.
           NAS-14.1]
 gi|83839995|gb|EAP79171.1| transcription antitermination factor NusB [Sulfitobacter sp.
           NAS-14.1]
          Length = 159

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     S   +               + +   D      ++  
Sbjct: 15  MKS--ASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGATYDGQEMIDGDIRHFADLLET 72

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +   ID + D  L    ++ R   +L+ L R + A++   +     V++  V+ A+ 
Sbjct: 73  AVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELRAQETPPRVVINEYVDVARA 132

Query: 114 DKENRHFAKLVNSILRRV 131
             E     K VN++L  +
Sbjct: 133 FFEGGDEPKFVNAVLDHM 150


>gi|257460184|ref|ZP_05625288.1| transcription antitermination factor NusB [Campylobacter gracilis
           RM3268]
 gi|257442625|gb|EEV17764.1| transcription antitermination factor NusB [Campylobacter gracilis
           RM3268]
          Length = 342

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 5/121 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   ARL +  LL              D    +   R      +    A++      L
Sbjct: 1   MATRHQARLAAISLLYSRDMNGGGEDFA-DEYLEEKRIRN---EQRNWTLALLRGASENL 56

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +DA++D  L    L       + +LR+   ++ + D     V++ A+  AK    +  
Sbjct: 57  AAVDALIDENLKEFKLAEISALERAILRLGAYELRFTDTDAGIVINEAINSAKELGISPR 116

Query: 120 F 120
           F
Sbjct: 117 F 117


>gi|145594393|ref|YP_001158690.1| transcription antitermination factor NusB [Salinispora tropica
           CNB-440]
 gi|189035903|sp|A4X612|NUSB_SALTO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145303730|gb|ABP54312.1| transcription antitermination factor NusB [Salinispora tropica
           CNB-440]
          Length = 136

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      +L                      +V      L
Sbjct: 1   MPARRKARKRALDVLFEADLRGRPPVEVLAGYVERIEKPRPEH--LGYAVGLVEGVAARL 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            R+D ++       +L R     + L R++V ++LY+D + D   +  AVE A++     
Sbjct: 59  DRVDELIASYAEGWTLDRMPTVDRNLARIAVYELLYVDEIDDAVAISEAVELARQM-STD 117

Query: 119 HFAKLVNSILRRVSRE 134
              + +N +L R++  
Sbjct: 118 DSPRFLNGLLGRIAEY 133


>gi|145224333|ref|YP_001135011.1| transcription antitermination protein NusB [Mycobacterium gilvum
           PYR-GCK]
 gi|315444665|ref|YP_004077544.1| NusB antitermination factor [Mycobacterium sp. Spyr1]
 gi|189035893|sp|A4TBX3|NUSB_MYCGI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145216819|gb|ABP46223.1| NusB antitermination factor [Mycobacterium gilvum PYR-GCK]
 gi|315262968|gb|ADT99709.1| NusB antitermination factor [Mycobacterium sp. Spyr1]
          Length = 164

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 10/153 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTLRF 59
              AR  +  LL     + I+   + +     +A       D          +       
Sbjct: 10  RHQARKRAVDLLFEAEARGITAAEVAE---ARNALADNGADDIAPLNPYTVTVARGVTDH 66

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID ++   L   +L R     + +LRV+V ++L+  DV +   VD AVE AK+    
Sbjct: 67  AAHIDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQ-LST 125

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
                 VN +L +V     ++    A +   P+
Sbjct: 126 DDSPGFVNGVLGQVMLVTPQIRAAAAAVQASPD 158


>gi|329298306|ref|ZP_08255642.1| transcription antitermination protein NusB [Plautia stali symbiont]
          Length = 139

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      ++S   + D+EY   A + +   D    R ++         +D ++ 
Sbjct: 11  ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDISYFRELLAGVATNSAFLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQLEKAILRISLYELSKRDDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + + +    
Sbjct: 127 LDKAAPQIRPN 137


>gi|163733974|ref|ZP_02141415.1| N utilization substance protein B-like protein, putative
           [Roseobacter litoralis Och 149]
 gi|161392510|gb|EDQ16838.1| N utilization substance protein B-like protein, putative
           [Roseobacter litoralis Och 149]
          Length = 160

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   ARL +   L  +     ++  +               + +   D  L   ++  
Sbjct: 16  MKS--AARLYAVQALFQMEHSGQTIEIVRREFLEHRFGETYDGQEMLDGDVDLFDTVIEG 73

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + F   ID + D  L     L R   +L+ L R + A++   D     V+   V+ A+ 
Sbjct: 74  AVNFQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAELNGKDTPPKVVISEYVDVARA 133

Query: 114 DKENRHFAKLVNSILRRV 131
             E+    KLVN +L  +
Sbjct: 134 FFEDGKEPKLVNGVLDHM 151


>gi|157369317|ref|YP_001477306.1| transcription antitermination protein NusB [Serratia proteamaculans
           568]
 gi|166918812|sp|A8GAN8|NUSB_SERP5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157321081|gb|ABV40178.1| NusB antitermination factor [Serratia proteamaculans 568]
          Length = 138

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E+   + + +   D +  R +++        +D+++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDIVYFRELLSGVAVNAGLLDSLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LR+++ ++ +  DV     ++ A+E AK         K VN +
Sbjct: 68  PVLSRQLEELGQVERAVLRIALYELKMREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|148655139|ref|YP_001275344.1| NusB antitermination factor [Roseiflexus sp. RS-1]
 gi|166215713|sp|A5URZ1|NUSB_ROSS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148567249|gb|ABQ89394.1| NusB antitermination factor [Roseiflexus sp. RS-1]
          Length = 142

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M S     R ++  +L  +     S   ++     +     L    +  +R +V      
Sbjct: 1   MASLRRRVRAIALQILFELDATDHSPDQVVARRLEEER---LPPEGERFLRRLVFGAWEH 57

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD---VADYAVVDLAVEQAKRDK 115
              +D +++       + +     + +LR+++ + L  +       A+++ AVE AK+  
Sbjct: 58  ASYLDRIIEETAPNWPVSQMPGVDKAILRIALFEALIDEEEKTPLKAIINEAVELAKQY- 116

Query: 116 ENRHFAKLVNSILRRVSREK 135
            + + ++ VN +L  V    
Sbjct: 117 GSDNSSRFVNGVLGTVVSRY 136


>gi|224417753|ref|ZP_03655759.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|253827096|ref|ZP_04869981.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|313141294|ref|ZP_07803487.1| transcription antitermination factor NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|253510502|gb|EES89161.1| transcription antitermination protein NusB [Helicobacter canadensis
           MIT 98-5491]
 gi|313130325|gb|EFR47942.1| transcription antitermination factor NusB [Helicobacter canadensis
           MIT 98-5491]
          Length = 184

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 5/141 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  + R V   LL            +            +  + +     + N  +  L
Sbjct: 1   MATRSHVREVVVQLLYAY---GSGNDAIFKFADEIFGEHKIKNKQKDFANLLFNGVIENL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D  +   L      +     + +LR+ V +I + ++     ++ A+E AK    N  
Sbjct: 58  ESLDLRIAHQLESWDFTKIGDMEKAILRLGVYEIAFNNLDKAIAINEALELAKTF-GNEA 116

Query: 120 FAKLVNSILRRVSREKIELLQ 140
            AK +N +L  +++     + 
Sbjct: 117 SAKFINGVLDNIAKNLQIPIH 137


>gi|302800612|ref|XP_002982063.1| hypothetical protein SELMODRAFT_228812 [Selaginella moellendorffii]
 gi|300150079|gb|EFJ16731.1| hypothetical protein SELMODRAFT_228812 [Selaginella moellendorffii]
          Length = 423

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 23/147 (15%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS---------ACFQRKLLLQGISFVKP 357
           +D VLVDA C+  G+++               +             Q +LL  G   +K 
Sbjct: 286 YDKVLVDAECTHDGSLKHICKFEQWGWETFEKRFFNSERISTITNLQLRLLSNGFRLLKQ 345

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
           GG +V+S CS     +E V+++ L + P        ++  W      +       +R  P
Sbjct: 346 GGTLVYSTCSFTYDQNEGVLKQFLAAHPDAEVREIKSAKSWPCTMTGL------CLRFDP 399

Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQP 444
                   + S  +G F   + +   P
Sbjct: 400 --------LVSNTNGQFVAKITKERMP 418


>gi|309807733|ref|ZP_07701667.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168993|gb|EFO71077.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners
           LactinV 01V1-a]
          Length = 160

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 37  AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96
               LS  D+ L   IV  T+++   ++  L  ++ + L      L  LL +S  Q  +L
Sbjct: 2   EKSQLSPIDKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFL 59

Query: 97  D-VADYAVVDLAVEQAKRD-KENRHFAKLVNSILRR------VSREKIELLQRIAGISII 148
           D +   ++VD A + AK    +     +LVN ILR       +  E+ + ++ ++     
Sbjct: 60  DKIPTASIVDEANKLAKSYSPKGSQSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSY 119

Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTV 182
           P+W  +   + +GK + ++I  A   P    + +
Sbjct: 120 PQWLVKYCLDHFGKAKTISILQAGNMPSVNSIRI 153


>gi|332363255|gb|EGJ41040.1| N utilization substance protein B [Streptococcus sanguinis SK49]
          Length = 143

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-------ILVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++      D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEDADKVAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|21312358|ref|NP_082418.1| putative methyltransferase NSUN4 [Mus musculus]
 gi|81904498|sp|Q9CZ57|NSUN4_MOUSE RecName: Full=Putative methyltransferase NSUN4; AltName:
           Full=NOL1/NOP2/Sun domain family member 4; AltName:
           Full=Sperm head and tail associated protein
 gi|12850082|dbj|BAB28584.1| unnamed protein product [Mus musculus]
 gi|19354059|gb|AAH24628.1| NOL1/NOP2/Sun domain family, member 4 [Mus musculus]
 gi|123253902|emb|CAM22671.1| NOL1/NOP2/Sun domain family, member 4 [Mus musculus]
          Length = 381

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 104/283 (36%), Gaps = 29/283 (10%)

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQ 235
             K + E+      ++               +   P    G      +++ DA++ +PV 
Sbjct: 105 HQKLEPESGLSPTPSLDCSPNLRCFTFSRGDVSRFPPARLGSLGLMDYYLMDAASLLPVL 164

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDI 293
             G  +  +VLDLCAAPGGKT  L+ +G    + A D+S  R  +L+  L          
Sbjct: 165 ALGLQHGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRTGRLQKVLHSYVPQDIRE 224

Query: 294 IEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACF 343
                      + +        D VLVD PC++          ++       +       
Sbjct: 225 GNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFQRSRKKERQMLPML 284

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWK 399
           Q +LL  G+   KPGG VV+S CSL    +E VVQ  +        I V++  L+     
Sbjct: 285 QVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKL 344

Query: 400 SID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +D      S +    + P+++             +   L RL
Sbjct: 345 FMDTFCFFPSCQVGELVIPNLMVNFGP-------MYFCKLHRL 380


>gi|55821710|ref|YP_140152.1| transcription antitermination protein NusB [Streptococcus
           thermophilus LMG 18311]
 gi|55823630|ref|YP_142071.1| transcription antitermination protein NusB [Streptococcus
           thermophilus CNRZ1066]
 gi|116628433|ref|YP_821052.1| transcription antitermination protein NusB [Streptococcus
           thermophilus LMD-9]
 gi|81558964|sp|Q5LY62|NUSB_STRT1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81560152|sp|Q5M2R7|NUSB_STRT2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122266972|sp|Q03IW6|NUSB_STRTD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|55737695|gb|AAV61337.1| transcriptional termination factor [Streptococcus thermophilus LMG
           18311]
 gi|55739615|gb|AAV63256.1| transcriptional termination factor [Streptococcus thermophilus
           CNRZ1066]
 gi|116101710|gb|ABJ66856.1| Transcription termination factor [Streptococcus thermophilus LMD-9]
 gi|312279051|gb|ADQ63708.1| Transcription antitermination factor NusB [Streptococcus
           thermophilus ND03]
          Length = 144

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           S  + R  +   L  +     +L         D      ++ D    + ++V      LP
Sbjct: 8   SRRDLRERAFQTLFALEFGGEALDQAYFAYTYDKPIDEETEVDLPSFLLSLVTGVREELP 67

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D+ ++  L    SL R   + + LLR+ + +I  + +      ++  +E AK+   ++
Sbjct: 68  QLDSQIEEKLKEGWSLSRLIMTDRTLLRLGLYEITSFEETPGRVAINEIIEIAKKY-SDK 126

Query: 119 HFAKLVNSILRRV 131
             AK +N +L + 
Sbjct: 127 TSAKFINGVLSQF 139


>gi|291616524|ref|YP_003519266.1| NusB [Pantoea ananatis LMG 20103]
 gi|291151554|gb|ADD76138.1| NusB [Pantoea ananatis LMG 20103]
          Length = 139

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      ++S   + D+EY   A + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDITYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LRVS+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRVSLYELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L +   +    
Sbjct: 127 LDKAGPQIRPQ 137


>gi|146297126|ref|YP_001180897.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|254772620|sp|A4XLC1|NUSB_CALS8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145410702|gb|ABP67706.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 142

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M      R +   +L     +      +  L+     +      + D+  ++ ++   +R
Sbjct: 1   MHKRRKTRELCMKILYAYRFQNNEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIR 60

Query: 59  FLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
               ID +++       L R      +L+R+++ ++L+  ++     +D AV+ +     
Sbjct: 61  NQQLIDNLIEKYSKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDLS-SIFG 119

Query: 117 NRHFAKLVNSILRR 130
                  VN IL  
Sbjct: 120 VEKAPSFVNGILGS 133


>gi|224824226|ref|ZP_03697334.1| NusB antitermination factor [Lutiella nitroferrum 2002]
 gi|224603645|gb|EEG09820.1| NusB antitermination factor [Lutiella nitroferrum 2002]
          Length = 148

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    AR  +   +            L++    ++ + +  + D+ L R ++   L+ 
Sbjct: 1   MKTSRRRAREFAVQGIYEWELNPDRPASLIEKHLRENDYFV--KADEALFRTLLFGVLKD 58

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENR 118
              +   +D              + +L ++  ++  + +     +++ A+E  K      
Sbjct: 59  AAELSPKIDRYYERPADEVSPVERAVLLMAALELTQHPETPYPVIINEAIEITKTFGGTD 118

Query: 119 HFA 121
              
Sbjct: 119 GHK 121


>gi|108799326|ref|YP_639523.1| transcription antitermination protein NusB [Mycobacterium sp. MCS]
 gi|119868442|ref|YP_938394.1| transcription antitermination protein NusB [Mycobacterium sp. KMS]
 gi|126434984|ref|YP_001070675.1| transcription antitermination protein NusB [Mycobacterium sp. JLS]
 gi|119390786|sp|Q1B9G7|NUSB_MYCSS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215699|sp|A3PZ57|NUSB_MYCSJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215700|sp|A1UFJ6|NUSB_MYCSK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|108769745|gb|ABG08467.1| NusB antitermination factor [Mycobacterium sp. MCS]
 gi|119694531|gb|ABL91604.1| NusB antitermination factor [Mycobacterium sp. KMS]
 gi|126234784|gb|ABN98184.1| NusB antitermination factor [Mycobacterium sp. JLS]
          Length = 162

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL     + ++   +       +  +            +          I
Sbjct: 10  RHQARKRAVDLLFEAEARGLTAAEVATSRNKLAGTQPDVTALNPYTVTVARGVTDHRDHI 69

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++   L   +L R     + +LRV+V ++L+  DV +   VD AVE AK+        
Sbjct: 70  DDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKQ-LSTDDSP 128

Query: 122 KLVNSILRRVS 132
             VN +L +V 
Sbjct: 129 GFVNGVLGQVM 139


>gi|15895354|ref|NP_348703.1| transcription antitermination protein NusB [Clostridium
           acetobutylicum ATCC 824]
 gi|22095961|sp|Q97HC8|NUSB_CLOAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15025072|gb|AAK80043.1|AE007710_13 Transcription termination factor NusB [Clostridium acetobutylicum
           ATCC 824]
 gi|325509499|gb|ADZ21135.1| transcription antitermination protein NusB [Clostridium
           acetobutylicum EA 2018]
          Length = 135

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   +R V+  LL  +   + S++  ++    ++    L   D   +  I+      +  
Sbjct: 2   NRKKSREVAMKLLFEISINKNSISDTIEHYKENNEIENL---DFEYIERILRGIDENMEY 58

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID+ ++       + R       +LR++  +I +  D+      + AVE AK   E   F
Sbjct: 59  IDSKIEESSKKWKISRISKINITILRMAAYEIFFEKDIPCKVSANEAVELAKSYAEENSF 118

Query: 121 AKLVNSILRR 130
           +  VN ++  
Sbjct: 119 S-FVNGVIGN 127


>gi|269138332|ref|YP_003295032.1| transcription termination factor [Edwardsiella tarda EIB202]
 gi|267983992|gb|ACY83821.1| transcription termination factor [Edwardsiella tarda EIB202]
 gi|304558364|gb|ADM41028.1| Transcription termination protein NusB [Edwardsiella tarda FL6-60]
          Length = 139

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   + + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQISK---NDIADVEYQFLSEQDVKDVDVNYFRELLSGVASNADYLDGLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LRVS+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PVLSRQLEELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +V+ +
Sbjct: 127 LDKVAPQ 133


>gi|84394359|ref|ZP_00993080.1| transcription antitermination protein NusB [Vibrio splendidus
           12B01]
 gi|86147433|ref|ZP_01065745.1| transcription antitermination protein NusB [Vibrio sp. MED222]
 gi|148976613|ref|ZP_01813300.1| transcription antitermination protein NusB [Vibrionales bacterium
           SWAT-3]
 gi|218710372|ref|YP_002417993.1| transcription antitermination protein NusB [Vibrio splendidus
           LGP32]
 gi|254772666|sp|B7VJA4|NUSB_VIBSL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|84375018|gb|EAP91944.1| transcription antitermination protein NusB [Vibrio splendidus
           12B01]
 gi|85834726|gb|EAQ52872.1| transcription antitermination protein NusB [Vibrio sp. MED222]
 gi|145963964|gb|EDK29222.1| transcription antitermination protein NusB [Vibrionales bacterium
           SWAT-3]
 gi|218323391|emb|CAV19568.1| N utilization substance protein B homolog [Vibrio splendidus LGP32]
          Length = 155

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-----------LSQRDQILVR 50
            +  NAR  +   +      + ++  + +       +             + + D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKENIATVEEQFLSGGKYDEEEHHAAEPALAMPETDVAYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            ++         +D+ L   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLTGVALSHMELDSKLRPFVSRPMQDLDLMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|325697632|gb|EGD39517.1| N utilization substance protein B [Streptococcus sanguinis SK160]
          Length = 143

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-------ILVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++    + D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKVAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+   + 
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQF-SDE 127

Query: 119 HFAKLVNSILRRV 131
             +K +N IL + 
Sbjct: 128 KSSKFINGILSKF 140


>gi|324992055|gb|EGC23977.1| N utilization substance protein B [Streptococcus sanguinis SK405]
 gi|324994148|gb|EGC26062.1| N utilization substance protein B [Streptococcus sanguinis SK678]
 gi|327459357|gb|EGF05703.1| N utilization substance protein B [Streptococcus sanguinis SK1]
 gi|327490573|gb|EGF22354.1| N utilization substance protein B [Streptococcus sanguinis SK1058]
          Length = 143

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++    + D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+   + 
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQF-SDE 127

Query: 119 HFAKLVNSILRRV 131
             +K +N IL + 
Sbjct: 128 KSSKFINGILSKF 140


>gi|188534655|ref|YP_001908452.1| transcription antitermination protein NusB [Erwinia tasmaniensis
           Et1/99]
 gi|238691979|sp|B2VHS8|NUSB_ERWT9 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188029697|emb|CAO97576.1| N utilization substance protein B [Erwinia tasmaniensis Et1/99]
          Length = 139

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D    R +V         +D ++ 
Sbjct: 11  ECAVQALYSWQISK---NDIADVEYQFLAEQDVKDVDITYFRELVGGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + + +    
Sbjct: 127 LDKAAPQIRPN 137


>gi|78044961|ref|YP_360813.1| transcription antitermination factor NusB [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|119390754|sp|Q3AAM1|NUSB_CARHZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|77997076|gb|ABB15975.1| transcription antitermination factor NusB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 144

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 3   SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQ-RDQILVRAIVNVTLRFL 60
           +   AR ++   L  +      +L  L  L     A   +   +     R +V   +   
Sbjct: 2   NRHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVDFSRELVRGVIEKK 61

Query: 61  PRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            R+D ++    +     R     + LLR+++ ++LY  D+     +D AVE AK      
Sbjct: 62  ERLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAK-VYGEE 120

Query: 119 HFAKLVNSILRRVSREKIELL 139
              K +N IL  V+    E  
Sbjct: 121 ESPKFINGILGYVAEHIDEFW 141


>gi|312195541|ref|YP_004015602.1| NusB antitermination factor [Frankia sp. EuI1c]
 gi|311226877|gb|ADP79732.1| NusB antitermination factor [Frankia sp. EuI1c]
          Length = 135

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   +R  +  +L     +  S    L++    S        +      +V      L
Sbjct: 1   MSARSKSRKRALDILYEADLRSTSP---LEILAARSVQNDPPVNE--YTSGLVRDVTEHL 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RID  +       +L R     + +LR++V ++++  DV D   +D AVE AK    +R
Sbjct: 56  GRIDGFIGEHAEGWTLERMPAVDRNILRIAVLEMMWRDDVPDRVAIDEAVELAKSVSTDR 115

Query: 119 HFA 121
             A
Sbjct: 116 SPA 118


>gi|302389868|ref|YP_003825689.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
 gi|302200496|gb|ADL08066.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
          Length = 154

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR     +L  +     ++   + +         +    +  +   VN  L     ID +
Sbjct: 20  AREWCFKILFAIDAGGNTIDEAMKITVNKPLNEDI----REFMLKEVNGVLEKKECIDEI 75

Query: 67  LDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +D   +   L R   + + ++R+++ +I +  D+     ++ AVE AK+   +    K V
Sbjct: 76  IDEYCVDWELERLNIADRNIMRLAIYEIFFSDDIPLSVSINEAVEIAKKY-GDEKSPKFV 134

Query: 125 NSILRRVSREKIELLQRIA 143
           N +L  ++R++ +L  R +
Sbjct: 135 NGVLGAIARDREKLRHRFS 153


>gi|87161392|ref|YP_494169.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|161509753|ref|YP_001575412.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848555|ref|ZP_06789301.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9754]
 gi|119390827|sp|Q2FGK9|NUSB_STAA3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035911|sp|A8Z464|NUSB_STAAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|87127366|gb|ABD21880.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368562|gb|ABX29533.1| N utilization substance B [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294824581|gb|EFG41004.1| transcription antitermination factor NusB [Staphylococcus aureus
           A9754]
 gi|315198781|gb|EFU29109.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320144127|gb|EFW35896.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus MRSA177]
          Length = 129

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +       L   D   +  +V+      P 
Sbjct: 2   SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDL---DFEFIHWLVSGVKGHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   ++ R   + + +LR++  +IL+ D     V++ AVE  K+  ++ H+ 
Sbjct: 59  LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRR 130
             +N +L  
Sbjct: 119 -FINGVLSN 126


>gi|326790845|ref|YP_004308666.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
 gi|326541609|gb|ADZ83468.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
          Length = 139

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNV 55
           +  NAR +   +L                         +  +++         +      
Sbjct: 2   TRRNARELIMQMLYE----GTFHPEEERERILYDQLNAMDSKEKSANKAIVKFIEDTYFG 57

Query: 56  TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
               +  IDA++     + S+ R       +LR+++ ++ Y DV     V+ AVE AK  
Sbjct: 58  VYEHVKEIDALIAGAAKNWSMARIAKVDLSILRLAIFELQYTDVPVKVAVNEAVEIAKIY 117

Query: 115 KENRH 119
             ++ 
Sbjct: 118 STDKS 122


>gi|221102749|ref|XP_002157714.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 265

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 22/186 (11%)

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTG 320
            + + D+   RL+ ++  L +    +      D       +      + +L+D  CS +G
Sbjct: 1   HIFSFDLDFNRLKLMQKLLKKSACTSVKTKHQDFLKVQHCHPLYSKVEYILLDPSCSGSG 60

Query: 321 TIRRHPDVLWTRD----TDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSE 374
            + R  + L   +     D +   + FQ   L   + F  VK    VV+S CS+ K+++E
Sbjct: 61  IVSRMDEFLDNEESTFLKDRLKALSGFQTAALSHALQFPNVKK---VVYSTCSVHKEENE 117

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           +VV+K          L       W +  +         IR  P             +GFF
Sbjct: 118 DVVEKAYNRFKETFHLC-HAFPEWSNRGLGEWEQAYKCIRAVP--------TIDYTNGFF 168

Query: 435 AVALRR 440
                R
Sbjct: 169 VALFER 174


>gi|51244954|ref|YP_064838.1| transcription termination factor (NusB) [Desulfotalea psychrophila
           LSv54]
 gi|81642559|sp|Q6AP93|NUSB_DESPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50875991|emb|CAG35831.1| probable transcription termination factor (NusB) [Desulfotalea
           psychrophila LSv54]
          Length = 141

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLT---CLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M     AR  +   L        S      L +          ++++ +     ++   L
Sbjct: 1   MSIRRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVNKKGRTYALNLIAGVL 60

Query: 58  RFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
                ID +++   +   + R   + + LLRV+  +I +  DV     ++ AVE AKR  
Sbjct: 61  ADQEAIDRLIEEAAVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVEIAKRFC 120

Query: 116 ENRHFAKLVNSILRRVSREKI 136
            +    K VN +L  V     
Sbjct: 121 GDES-PKFVNGVLDAVKTLCQ 140


>gi|323353378|ref|ZP_08087911.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
 gi|322121324|gb|EFX93087.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
 gi|327472778|gb|EGF18205.1| N utilization substance protein B [Streptococcus sanguinis SK408]
          Length = 143

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++    + D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----ELVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|308371048|ref|ZP_07667079.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu003]
 gi|308373441|ref|ZP_07667582.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu005]
 gi|308377044|ref|ZP_07668414.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu008]
 gi|308378420|ref|ZP_07668745.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu009]
 gi|308405376|ref|ZP_07669465.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu012]
 gi|308330008|gb|EFP18859.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu003]
 gi|308337652|gb|EFP26503.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu005]
 gi|308349124|gb|EFP37975.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu008]
 gi|308352601|gb|EFP41452.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu009]
 gi|308365233|gb|EFP54084.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu012]
          Length = 249

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL     + IS   ++D     +  +    R      A+          I
Sbjct: 10  RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D ++   L   +L R     + +LRVSV ++L+  DV +  VVD AV+ AK         
Sbjct: 70  DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSP 128

Query: 122 KLVNSILRRVS 132
             VN +L +V 
Sbjct: 129 GFVNGVLGQVM 139


>gi|307720293|ref|YP_003891433.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
 gi|306978386|gb|ADN08421.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
          Length = 135

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR+    LL        + +   +    +   R    + +     +    +  +
Sbjct: 1   MATRQQARMAVVSLLYAYDLGNGNTSEHSNEILEEKKIRN---KQKDFALGLYEGVMEHI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID  +   L      R     +  LR++  +IL+ ++    V++ AVE  K       
Sbjct: 58  EEIDKAIVEHLKEWDFERLGAIERATLRLATYEILFGELDSAVVINEAVEITKSF-GTEQ 116

Query: 120 FAKLVNSILRRVSREK 135
             K +N +L  ++++ 
Sbjct: 117 SPKFINGVLDAIAKDH 132


>gi|160897907|ref|YP_001563489.1| NusB antitermination factor [Delftia acidovorans SPH-1]
 gi|238687189|sp|A9BVN7|NUSB_DELAS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160363491|gb|ABX35104.1| NusB antitermination factor [Delftia acidovorans SPH-1]
          Length = 212

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +     +   +D    D       + D +   A++   +    
Sbjct: 33  SNRSRAREFALQALYQHLVGGNDV-EAIDRFTRD--LSGFHKADSVHYDALLRGCINSQV 89

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA++   L  ++          + + V +  +  DV    V++  +E AK        
Sbjct: 90  DLDALIAPKLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGH 149

Query: 121 A 121
            
Sbjct: 150 K 150


>gi|28378299|ref|NP_785191.1| transcription antitermination protein NusB [Lactobacillus plantarum
           WCFS1]
 gi|32171607|sp|Q88WM9|NUSB_LACPL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28271134|emb|CAD64039.1| transcription termination factor NusB [Lactobacillus plantarum
           WCFS1]
          Length = 139

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M  +    R  +   L  +          L            +       +  +V     
Sbjct: 1   MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEETDAVEIP--AYLSTLVTGVRE 58

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
               +DA +   L    SL R   +   +LR++  ++ +  DV     V+ A+E  K   
Sbjct: 59  HQVELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAVNEAIELTKAFS 118

Query: 116 ENRHFA 121
           ++R   
Sbjct: 119 DDRSRK 124


>gi|157364365|ref|YP_001471132.1| transcription antitermination protein NusB [Thermotoga lettingae
           TMO]
 gi|254772664|sp|A8F7D4|NUSB_THELT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157314969|gb|ABV34068.1| NusB antitermination factor [Thermotoga lettingae TMO]
          Length = 140

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M      R +   ++     +  S+  +L+      +   L + D   +   V      L
Sbjct: 1   MTRRSKMRDLVFKVIFQNEFRNDSIETVLEDIL-HISKSGLMKAD---ITRYVKGIYENL 56

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
           P ID  +   L + SL R     + +LR++  ++LY  DV     +D AVE AK+     
Sbjct: 57  PSIDEKISLCLENWSLQRLSLVDRSILRLATYELLYESDVPIEVTLDEAVEIAKKY-GTE 115

Query: 119 HFAKLVNSILRR 130
           + +K VN +L +
Sbjct: 116 NSSKFVNGVLDK 127


>gi|304395478|ref|ZP_07377361.1| NusB antitermination factor [Pantoea sp. aB]
 gi|304356772|gb|EFM21136.1| NusB antitermination factor [Pantoea sp. aB]
          Length = 139

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      ++S   + D+EY   A + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDITYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRISLYELSKRNDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|157821259|ref|NP_001100148.1| NOL1/NOP2/Sun domain family, member 4 [Rattus norvegicus]
 gi|149035614|gb|EDL90295.1| NOL1/NOP2/Sun domain family, member 4 (predicted) [Rattus
           norvegicus]
          Length = 381

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 98/266 (36%), Gaps = 29/266 (10%)

Query: 198 LPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
                         +   P  + G      +++ DA++ +PV   G  +   VLDLCAAP
Sbjct: 122 CSPNLRCFTFSKGDVSRFPPASVGSLGLMDYYLMDAASLLPVLALGLQHGDIVLDLCAAP 181

Query: 253 GGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--- 307
           GGKT  L+ +G    + A D+S  R  +L+  L                     + +   
Sbjct: 182 GGKTLALLQTGCCRNLAANDLSTSRTGRLQKVLHSYVPQDIRKGNHIRVTSWDGRKWGEL 241

Query: 308 -----DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                D VLVD PC++          ++       +       Q +LL  G+   KPGG 
Sbjct: 242 EGDTYDKVLVDVPCTTDRHSLHEDENNIFQRSRKKERQMLPMLQVQLLGAGLLATKPGGH 301

Query: 361 VVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRI 415
           VV+S CSL    +E VVQ  +        I V++  L+      +D      S +    +
Sbjct: 302 VVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKLFMDTFCFLPSCQVGELV 361

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441
            P+++             +   L R+
Sbjct: 362 IPNLMANFGP-------MYFCKLHRV 380


>gi|308069602|ref|YP_003871207.1| N utilization substance protein B-like protein [Paenibacillus
           polymyxa E681]
 gi|305858881|gb|ADM70669.1| N utilization substance protein B-like protein [Paenibacillus
           polymyxa E681]
          Length = 149

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-------QILVRAIV 53
           MK  + AR ++   +  +    +     +D+   ++A    ++         +  V   V
Sbjct: 1   MKRRL-ARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEENEAEVVVKNAAVLRAYVLEHV 59

Query: 54  NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
             T      ID +L   L    + R     +Q+LR++  ++++  DV     V+ A+E +
Sbjct: 60  RGTWEHKEAIDGLLVDYLKGWQISRLSRVDRQILRLAAYEMIFREDVPAKVAVNEAIELS 119

Query: 112 KRDKENRHFAKLVNSILRR 130
           K         K VN +L R
Sbjct: 120 K-HFGTEESGKFVNGVLGR 137


>gi|300870191|ref|YP_003785062.1| transcription antitermination protein NusB [Brachyspira pilosicoli
           95/1000]
 gi|300687890|gb|ADK30561.1| transcription antitermination protein, NusB [Brachyspira pilosicoli
           95/1000]
          Length = 174

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 3   SGMNARLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           +   AR+ +   L    +  K++++  L + EY D      S       + +V  T+  L
Sbjct: 42  TRRQARIYAVMALYSYEINEKKVNINELFNFEYDDKKAANNS-----FTKELVEGTINNL 96

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            +ID++++    +  + R +Y  + ++R+S+  ++YL D+    ++D AVE AK    ++
Sbjct: 97  QKIDSIIEKYSKNWNISRIQYVDKSIIRMSIYSLIYLKDIPKSVIIDEAVEIAK-IFGDK 155

Query: 119 HFAKLVNSILRRVSREKIE 137
              K VN IL  +  E I+
Sbjct: 156 DSYKFVNGILDAIQEEDIQ 174


>gi|317047151|ref|YP_004114799.1| NusB antitermination factor [Pantoea sp. At-9b]
 gi|316948768|gb|ADU68243.1| NusB antitermination factor [Pantoea sp. At-9b]
          Length = 139

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      ++S   + D+EY   A + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDISYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + + +    
Sbjct: 127 LDKAAPQIRPN 137


>gi|171463084|ref|YP_001797197.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192622|gb|ACB43583.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 169

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 7/125 (5%)

Query: 2   KSGMNARLVSSHLLSC--VMRKRISLT--CLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
                AR  +   +    VMR+  S+     +  +  +       Q D  L ++I +  L
Sbjct: 26  TPRRRAREYALQGVYQSLVMRRAGSIPNGAAIAKQLSEDPAFRRCQLD--LFQSIFDGVL 83

Query: 58  RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKE 116
                ++A++   L   +          L +   ++   L V     ++ AVE AK    
Sbjct: 84  ARTDELEAIITPALDRPINELSPVEHAALLIGAYELAADLSVPYKVAINEAVELAKTFGG 143

Query: 117 NRHFA 121
                
Sbjct: 144 TDGHK 148


>gi|156938118|ref|YP_001435914.1| Fmu (Sun) domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156567102|gb|ABU82507.1| Fmu (Sun) domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 405

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 129/424 (30%), Gaps = 49/424 (11%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           +++  L+    K  SL   L+  Y       L    +  +  +++   R    +   L  
Sbjct: 23  IAARALARA-SKGYSLKGYLEKAYKKYK---LPDPVRPALVGMISDVARRWMLLSRALGL 78

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                     Y  + ++     Q L+  V    +           +  R   + +     
Sbjct: 79  SYERPKASFDYWFKVVI---AYQALFRKVKPGKL------WWAFKRFPRDLYEELLKAGP 129

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
                 +   +R      + +W  E L+ F   +  +   D      ++ +     +   
Sbjct: 130 EDYLAGLGGEERERVYRSVAKWAWEELKKFTDPKEFVDALD-HPEGFWVRIRDPGAVPEL 188

Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249
                    P         P+ +V   G       + + ++            +  LDL 
Sbjct: 189 KRLYEVEEGPFDDSLYLRGPKRLVLKSGLHPKKVVIMELASMSVAH---LAKGVRALDLT 245

Query: 250 AAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
           AAPGGK+  L   G  V + D+             R   +  + +  DA     +K FD 
Sbjct: 246 AAPGGKSLHLSDRGFIVISNDLDP-----------RRFAFDVEKVVSDARLPAFRKAFDT 294

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           V++D  CS  G +   P+        +  K + +QR+L+   +S  K G  ++++ C++ 
Sbjct: 295 VVLDPDCSGIGRLGS-PETRILLPFINKNKMSEYQRELIKGMLSLAKRGTRLIYTTCTIT 353

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
            +++E              E V                   GW    P +          
Sbjct: 354 YEENEA--------HSELFEEVAEPVEVEVGAPRGRR----GWRWFLPQL--------HK 393

Query: 430 MDGF 433
             GF
Sbjct: 394 TIGF 397


>gi|167950837|ref|ZP_02537911.1| Sun protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 104

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           KS  + RL+++ +L  V+ K  SL+ LL              RD+ L + +    +R  P
Sbjct: 9   KSAADPRLIAARVLRDVL-KGRSLSDLLPERLNGLD----DPRDRALAQELCYGVMRGYP 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYA 102
           R+ A++  +L   L  K   LQ L+ + + Q+  + VA +A
Sbjct: 64  RLQALVGLLLKKPLKAKDQDLQALILIGLYQLSEMRVAAHA 104


>gi|332357987|gb|EGJ35820.1| N utilization substance protein B [Streptococcus sanguinis SK1056]
          Length = 143

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++    + D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKAVEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|328945778|gb|EGG39929.1| N utilization substance protein B [Streptococcus sanguinis SK1087]
          Length = 143

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-------ILVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++    + D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKVAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|327469227|gb|EGF14699.1| N utilization substance protein B [Streptococcus sanguinis SK330]
 gi|332363805|gb|EGJ41584.1| N utilization substance protein B [Streptococcus sanguinis SK355]
          Length = 143

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++    + D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|254168646|ref|ZP_04875489.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
 gi|289595747|ref|YP_003482443.1| Fmu (Sun) domain protein [Aciduliprofundum boonei T469]
 gi|197622480|gb|EDY35052.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469]
 gi|289533534|gb|ADD07881.1| Fmu (Sun) domain protein [Aciduliprofundum boonei T469]
          Length = 355

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 33/200 (16%)

Query: 245 VLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           VLD CA  GGK+  +    S  K+ A D+++R+L+ L     +        + +  F   
Sbjct: 184 VLDYCAGSGGKSLAMHALNSNLKIHAYDINERKLKSLENRAKKWE------MNVYIFYDK 237

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P   F  VLVDAPCS  G   R+P+  +    +D  K A  Q ++L +    VK  G +V
Sbjct: 238 PSGEFPVVLVDAPCSGVGAAARNPEAKY---QEDFEKFAKMQMEILNEAKENVKSHGYLV 294

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +  CS    ++E ++++ L  +P  V  E+      Y K  +    +             
Sbjct: 295 YVVCSYTPWETENLIEEFLNKAPYFVPQEIKCEYERYIKKGNYGAYILA----------- 343

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                     D F+   LRR
Sbjct: 344 ---------GDIFYVSVLRR 354



 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 17/97 (17%)

Query: 9  LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           ++  ++   MRK      + D+    S    LS  ++  V  IV+  +R+    D +++
Sbjct: 4  KIAVRVIRKWMRKGNMARAMRDILPRSS----LSFEEREQVARIVHDVVRYKLYYDYIME 59

Query: 69 FV-------------LISSLPRKKYSLQQLLRVSVAQ 92
                         L        Y ++  L + +A+
Sbjct: 60 KRGMKKNAENYVKLSLKKPKVNTPYHIRNSLSLKLAE 96


>gi|332364657|gb|EGJ42426.1| N utilization substance protein B [Streptococcus sanguinis SK1059]
          Length = 143

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++    + D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFSYSYDKDEEADKAAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|312143732|ref|YP_003995178.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus']
 gi|311904383|gb|ADQ14824.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus']
          Length = 133

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           S    R+    +L  +  +    L   L         + + + D    + ++   +    
Sbjct: 5   SRHKQRIWVLQILYGLDIRNKLDLESALKSFKEFLKEKEIKKEDI-YAKELLLGVITERE 63

Query: 62  RIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +DA ++   +  ++ R     + +LR+++ +I + ++     ++ AV+ AK+  ++R  
Sbjct: 64  ILDAQINEQAIDWTIERMPPVDRNILRIAIYEIQH-EMPAGVAINEAVKIAKKFADDRSP 122

Query: 121 A 121
           +
Sbjct: 123 S 123


>gi|237749244|ref|ZP_04579724.1| N utilization substance protein B [Oxalobacter formigenes OXCC13]
 gi|229380606|gb|EEO30697.1| N utilization substance protein B [Oxalobacter formigenes OXCC13]
          Length = 156

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                +R  +   L   +  R     +++       F    + D      +++ ++    
Sbjct: 15  SPRHRSREFALQGLYEWLLNRDDAPVIIEHIRQAHGF---DKADTGHFVTLLSGSIHQAD 71

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
           ++   L   +   L         +L +   ++  ++++    V++ AVE  K        
Sbjct: 72  KLREELAPHIDRPLEELSPVEHAILLLGAFELSNHIEIPYRVVINEAVELTKSFGGIDGH 131

Query: 121 A 121
            
Sbjct: 132 K 132


>gi|300784648|ref|YP_003764939.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32]
 gi|299794162|gb|ADJ44537.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32]
          Length = 151

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +  +L   +++      LL    G +    +          +V        +
Sbjct: 15  SRRQARRRAVEMLYEAVQRDTDAVTLLADRVGATEVDPIGD----YTITLVEGVTGRKTQ 70

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID +L       +L R       +LRV V ++L+  DV D   +D AV  AK        
Sbjct: 71  IDELLAEHAQGWTLERMPKVDLAVLRVGVYELLWAEDVPDPVAIDEAVGLAKE-LSTDDS 129

Query: 121 AKLVNSILRR 130
            + VN +L R
Sbjct: 130 PRFVNGVLGR 139


>gi|193783571|dbj|BAG53482.1| unnamed protein product [Homo sapiens]
          Length = 251

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 24/237 (10%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLR 280
           +++ DA++ +PV   G      VLDLCAAPGGKT  L+ +G    + A D+S  R+ +L+
Sbjct: 22  YYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQ 81

Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHPDVLW 330
             L                     + +        D VLVD PC++          ++  
Sbjct: 82  KILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFK 141

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPI 386
                +       Q +LL  G+   KPGG VV+S CSL    +E VVQ  +        I
Sbjct: 142 RSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSI 201

Query: 387 PVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            V++  L       +D      S +    + P+++             +   +RRL 
Sbjct: 202 QVQVEDLTHFRRVFMDTFCFFSSCQVGELVIPNLMANFGP-------MYFCKMRRLT 251


>gi|242373824|ref|ZP_04819398.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis M23864:W1]
 gi|242348378|gb|EES39980.1| transcription antitermination protein NusB [Staphylococcus
           epidermidis M23864:W1]
          Length = 128

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +       L   D   +  +V         
Sbjct: 2   SRKESRIQAFQTLFQLEMKDTDLTITEAINFIKDDHPEL---DFDFIHWLVTGVKDHESV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   S+ R   S + +LR++  ++L+ D  +  +++ AVE  K+  ++ H+ 
Sbjct: 59  LDEKIKPHLKDWSIERLLKSDRIILRMATFEMLHSDTPEKVIINEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRRVS 132
             +N +L  ++
Sbjct: 119 -FINGVLSNIN 128


>gi|256825101|ref|YP_003149061.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547]
 gi|256688494|gb|ACV06296.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547]
          Length = 137

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  LL    ++ +++  L+     +   +++          +V   +   
Sbjct: 1   MAARSKARKRAVDLLFEAEQRSLNVEVLMARRREEPEAQVVVPE---FTVTLVEGVVSHW 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             I+  L       SL R     + +LR+   +I++  DV D   +  AV  A       
Sbjct: 58  ASINDALSSWSQGWSLERMPAVDRAILRLGTYEIVWAEDVPDAVAISEAVNLA-AHLSTD 116

Query: 119 HFAKLVNSILRRVSRE 134
                V+ +L R+S+ 
Sbjct: 117 ESPNFVSGLLTRISQM 132


>gi|115725272|ref|XP_792601.2| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 4
           [Strongylocentrotus purpuratus]
 gi|115958636|ref|XP_001193352.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 4
           [Strongylocentrotus purpuratus]
          Length = 513

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 99/266 (37%), Gaps = 24/266 (9%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACI--SPLYIDLTVKFDIETWAHKLNAVMLPTGG 202
                 W+  R     G E  + +          + +L  +         ++A +  +  
Sbjct: 198 RQPTKPWWDGRYIVATGYEHRMDLVQQLELEERGHSELVSEPSGANPIKVVDADLEISPH 257

Query: 203 IRLKELPESIVSLP------GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
           +R      S   LP            +++ D ++ +PV       +  VLDLCA PGGK+
Sbjct: 258 LRCFMNKSSFKRLPQAKRGSEEPNLQYYIMDPASVLPVLAMDVRTDDVVLDLCAGPGGKS 317

Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY---------AEDIIEMDAFDYCPKKLF 307
             ++ +    T    +++ L + R   + L L          A  +  +D  ++   +  
Sbjct: 318 VAILQTMLISTLT-ANEKVLSRKRRLQEVLGLCLPRSIRTSGAIRVSGLDGCEWGQIEPM 376

Query: 308 --DAVLVDAPCSST---GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             D VLVD PCS+     T   +     +R  +        Q  LL  G+  VKPGG VV
Sbjct: 377 AYDKVLVDVPCSTDRVSATQADNNLFKVSRSRERW-DLPELQTDLLCAGLQAVKPGGTVV 435

Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPV 388
           +S C++    ++ VVQ  +       
Sbjct: 436 YSTCTMSPLQNDGVVQNAITRCQEEF 461


>gi|297569245|ref|YP_003690589.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2]
 gi|296925160|gb|ADH85970.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2]
          Length = 138

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   +R ++   L       +S    L +   +     +S++       +V   +  L
Sbjct: 1   MGARRKSRELALQALYQADMSNVSALDTLPVLCEN---FEVSRKALPYGEGLVGGVVANL 57

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID +++       + R     + ++R++V +  +  DV     ++ A+E AKR     
Sbjct: 58  AAIDRIIEAGSAHWRVSRMSCIDRNIIRIAVYEFNFAADVPAGVAINEAIELAKRFGSED 117

Query: 119 HFA 121
             A
Sbjct: 118 SPA 120


>gi|33991631|gb|AAH56405.1| NSUN5C protein [Homo sapiens]
 gi|62740214|gb|AAH93976.1| NSUN5C protein [Homo sapiens]
 gi|75516532|gb|AAI01516.1| NSUN5C protein [Homo sapiens]
          Length = 117

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
               +   A FQ++ L   ++F  ++    +V+S CSL ++++E++VQ  L+ +P    L
Sbjct: 15  SPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVQDALQQNPGAFRL 71

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            P   A      ++     E  +R +P              GFF   + R+  P
Sbjct: 72  APALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 116


>gi|327458960|gb|EGF05308.1| N utilization substance protein B [Streptococcus sanguinis SK1057]
          Length = 143

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++      D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEGADKATEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|125717317|ref|YP_001034450.1| transcription antitermination protein NusB [Streptococcus sanguinis
           SK36]
 gi|125497234|gb|ABN43900.1| Nitrogen utilization substance protein B, putative [Streptococcus
           sanguinis SK36]
          Length = 148

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++      D+         +  +V+  ++  
Sbjct: 18  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEGADKAAEADIPAFLLNLVSGVVQSK 73

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 74  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 133

Query: 119 HFA 121
              
Sbjct: 134 SSK 136


>gi|303228824|ref|ZP_07315638.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303232103|ref|ZP_07318806.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513209|gb|EFL55248.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516536|gb|EFL58464.1| transcription antitermination factor NusB [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 134

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 1   MKSGMN---ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M    N   AR  +  +L        +   +        +       D      I++  L
Sbjct: 1   MSKKRNRREARQYAFQVLYANEFHTSNDDVIFPDGEISLSM------DIAYANQIIDGVL 54

Query: 58  RFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRD 114
             L  ID +L+               + +LR+++ ++ Y   +V+   V++ AV+ AK  
Sbjct: 55  SHLEEIDTILEPYCTKRKFVLMDKVDRAILRLAIWELNYNSEEVSPSIVINEAVQLAKSF 114

Query: 115 KENRHFA 121
             +  + 
Sbjct: 115 GSDASYK 121


>gi|94984805|ref|YP_604169.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300]
 gi|119390766|sp|Q1J0I4|NUSB_DEIGD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94555086|gb|ABF45000.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300]
          Length = 169

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-----FRLLSQRDQILVRAIVNVTL 57
           +   AR  +  +L    R ++ L  +     GD       F  L+       R +V+   
Sbjct: 14  TRRAAREFAFRVLFEAERGKLPLETVFTRAEGDMREGDDTFAQLNAEALAFARQLVDGLG 73

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                +DA L   +      +   +   +LR++  ++LY       V++ AV  A++   
Sbjct: 74  ERRADVDAALRRTIRGWDFEQMAQTDLNVLRLATYEMLYTPEPHPPVIESAVRIARKFGG 133

Query: 117 NRH 119
              
Sbjct: 134 EDS 136


>gi|269926747|ref|YP_003323370.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798]
 gi|269790407|gb|ACZ42548.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798]
          Length = 153

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 6/126 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR ++  +L      R     +L     +     + ++       +     +     
Sbjct: 12  RHQARALAMQVLYEAETTRKQPYEILQRRRNE---ENIPEQVHAYASDLAIGVWQNRKEY 68

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           D+++       ++ +     + +LR++V ++L   DV   A ++ AVE AK         
Sbjct: 69  DSLITRFTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELAKEY-GAEASP 127

Query: 122 KLVNSI 127
           K VN +
Sbjct: 128 KFVNGV 133


>gi|229817326|ref|ZP_04447608.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM
           20098]
 gi|229785115|gb|EEP21229.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM
           20098]
          Length = 137

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  + + L     K   +  LL+        +            IV         ID  
Sbjct: 6   ARKRALNTLYEADEKGQDILSLLEERIAVPGAQTPLPE---YAIEIVRGVAEHRRDIDEK 62

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           LD       + R     + +LR++  +I+Y D V D   +D A+  AK   +    A
Sbjct: 63  LDECSTGWKISRMGVVDRNILRIAAWEIMYNDEVPDRVAIDEALGLAKTLCDGESPA 119


>gi|193786589|dbj|BAG51912.1| unnamed protein product [Homo sapiens]
          Length = 335

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 75  ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 134

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 135 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 194

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 195 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERRILPVLQVQLLAAGLLATKPGG 254

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 255 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 314

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   +RRL 
Sbjct: 315 VIPNLMANFGP-------MYFCKMRRLT 335


>gi|157738073|ref|YP_001490757.1| transcription antitermination protein NusB [Arcobacter butzleri
           RM4018]
 gi|315636425|ref|ZP_07891669.1| transcription antitermination factor NusB [Arcobacter butzleri
           JV22]
 gi|166918802|sp|A8EVW4|NUSB_ARCB4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157699927|gb|ABV68087.1| transcription termination factor NusB [Arcobacter butzleri RM4018]
 gi|315479291|gb|EFU69980.1| transcription antitermination factor NusB [Arcobacter butzleri
           JV22]
          Length = 131

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +T  +D    +   R  +Q+D      + N T++ L
Sbjct: 1   MATRTQARESVIGLLYAYDLGNDGITKFVDEILEEKKIRN-NQKD--FALNLFNGTIKNL 57

Query: 61  PRIDA-VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +ID  ++  +   +L       + +LR+++ +IL+  +    +++ A+E +KR   +  
Sbjct: 58  SQIDENIVSNLNQGTLSDIGSVEKSILRLAIYEILFESLPKAIIINEAIELSKR-LASDG 116

Query: 120 FAKLVNSILRR 130
             K +N +L +
Sbjct: 117 APKFINGLLDK 127


>gi|26522749|dbj|BAC44853.1| NusB protein [Photobacterium phosphoreum]
          Length = 157

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  +         F     +           D    R
Sbjct: 8   AARRNARQFAVQAIYSWQLTKGNVADIEQYFLSGDKFEEEEHQADAPVCKAPDTDVSYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            +    +     +D+ +   L   L         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLFAGVVLSHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRR 130
            AK         K VN +L +
Sbjct: 128 LAK-LFGAEDSHKFVNGVLDK 147


>gi|218190605|gb|EEC73032.1| hypothetical protein OsI_06971 [Oryza sativa Indica Group]
          Length = 350

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 101/351 (28%), Gaps = 70/351 (19%)

Query: 148 IPEWFKERLENF----YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
           +P  F E L+              I         ++  +          L+ V       
Sbjct: 11  LPPAFLEFLQENGLDPMMYSMADTIPRYIRLKPGMEAQIPEIQSELKCHLDKVSWLPDFY 70

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS- 262
            +    + I S   + +G  +  DA++   V          VLDLCAAPG K   L    
Sbjct: 71  AIPPQVQ-IASSKAYQQGKIYGIDAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADML 129

Query: 263 --GAKVTALDVSKRRLEKLRCNLDRLHLYAED-------------------------IIE 295
                +T +DV+K RL   R  L +  L                                
Sbjct: 130 GGRGSLTGVDVAKHRLAACRTMLQKYSLGDCCRLFVADGTSFSILPVNSSLGSGEGSTCL 189

Query: 296 MDAFDYCPKKLFDAVLVDAPCS------------------------STGTIRRHPDVLWT 331
            D      +        D   S                         +G +         
Sbjct: 190 KDNGSTLSEWTSKRSWKDRQKSKKARTAGSPHLTSTSEPELIYYGKHSGLVGLRKCDALR 249

Query: 332 RDTDDIVKSACFQR-KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
              DD  +++ + + +LL  G   +K GG +V+S CSL    +E VVQ+ L       EL
Sbjct: 250 PSADDEAQTSGYDKLRLLTNGFKLLKTGGSLVYSTCSLTVAQNENVVQQFLCKH-SSAEL 308

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             ++SA                +R  P         +S   G F     +L
Sbjct: 309 QKIDSADSWPCRSGSIF---KTLRFDP--------ATSQTSGLFVAKFTKL 348


>gi|15827185|ref|NP_301448.1| transcription antitermination protein NusB [Mycobacterium leprae
           TN]
 gi|221229663|ref|YP_002503079.1| transcription antitermination protein NusB [Mycobacterium leprae
           Br4923]
 gi|18202776|sp|Q9CCR9|NUSB_MYCLE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772649|sp|B8ZUK7|NUSB_MYCLB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13092733|emb|CAC30031.1| putative transcription termination protein [Mycobacterium leprae]
 gi|219932770|emb|CAR70616.1| putative transcription termination protein [Mycobacterium leprae
           Br4923]
          Length = 190

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR  +  LL     + +S   ++++    +  +L           +         
Sbjct: 6   KGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTA 65

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           RID ++   L    L R     + +LRVS+ ++LY  DV +   VD AVE AK       
Sbjct: 66  RIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKE-LSTDD 124

Query: 120 FAKLVNSILRRVS 132
               VN +L +V 
Sbjct: 125 SPGFVNGLLGKVM 137


>gi|310829051|ref|YP_003961408.1| antitermination protein NusB [Eubacterium limosum KIST612]
 gi|308740785|gb|ADO38445.1| antitermination protein NusB [Eubacterium limosum KIST612]
          Length = 152

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 1   MKSGMN---ARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAF----RLLSQRDQILVRA 51
           M   MN    R ++   +  +    +   L   L   +  +        +S       + 
Sbjct: 1   MSRKMNRKEERELALRGIFQIDFHAEDAELDTSLKNFFELAGQGDPEDEVSGMTGGYAKK 60

Query: 52  IVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109
           ++N  L     IDA++   L       R     + +LR+ V ++LY  V     ++ AVE
Sbjct: 61  VINAALENQGAIDALIASHLKETWDFSRVPKMEKAILRLGVTELLYTKVPKEVAINEAVE 120

Query: 110 QAKRDKENRHFAKLVNSILRRVSREK 135
            AK+          +N IL RV+ E 
Sbjct: 121 LAKKYASEES-KTYINGILNRVAVEH 145


>gi|296115207|ref|ZP_06833848.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
 gi|295978308|gb|EFG85045.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
          Length = 183

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 14/146 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD----------SAFRLLSQRDQILVRA 51
           +S   +R+ +   L  + +   +   ++                 A   +   D  L  A
Sbjct: 19  RSRTASRVGAVQALFQIEQGGDNAENVVSQFTHHRLPTGKTSLGYAEGQVPDADIRLFTA 78

Query: 52  IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108
           IV  ++     IDA++  VL     + R    L+ LLR +  ++   D      +++  +
Sbjct: 79  IVRGSVARQADIDAMVADVLPASWPMDRLDPVLRALLRAAGGELTAQDPAPSRVIINEYM 138

Query: 109 EQAKRDKENRHFAKLVNSILRRVSRE 134
           + A          +++N +L  +SR 
Sbjct: 139 DVAHGFFSGDE-PRMLNGVLDAMSRR 163


>gi|299749810|ref|XP_001836347.2| williams-Beuren syndrome critical region protein 20 copy A
           [Coprinopsis cinerea okayama7#130]
 gi|298408609|gb|EAU85531.2| williams-Beuren syndrome critical region protein 20 copy A
           [Coprinopsis cinerea okayama7#130]
          Length = 486

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 87/258 (33%), Gaps = 41/258 (15%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLS--VLDLCAAPGGKTAQL---IVSGAKVTALD 270
           P + +G   +QD ++  P  +          V+D  AAPG KT+ L   + +  K+ A +
Sbjct: 213 PAYLDGRAIIQDKASCFPAFVLNPPATEDSVVIDATAAPGNKTSHLSALMGNKGKLYAFE 272

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
             KRR   L+  L+         I  D     P+      +          +        
Sbjct: 273 RDKRRFLTLQKMLNTAQCRNAIPINADFLTIDPEDNKFRPVTHIGSGIVNRLDHLIPTGT 332

Query: 331 TRD-------------------------TDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
            +                           + + K A FQ K++   + F      +V+S 
Sbjct: 333 RKSTDKLETSRLLHTVLILTAIEEEDIPNERLAKLATFQLKMIQHAMKFPNVE-RIVYST 391

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425
           CS+   ++E VV+  L S            A    +     + P    R  P+ ++  DG
Sbjct: 392 CSIHATENEHVVRAALDS--------DEAKAGPFVLAPRNEVIPSWSRRGLPEEMKSADG 443

Query: 426 VSSGMDGFFAVALRRLIQ 443
              G +GFF     R+ +
Sbjct: 444 --DGTNGFFVSCFIRVQK 459


>gi|299822999|ref|ZP_07054885.1| transcription antitermination factor NusB [Listeria grayi DSM
           20601]
 gi|299816528|gb|EFI83766.1| transcription antitermination factor NusB [Listeria grayi DSM
           20601]
          Length = 130

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR V+   L  +    +S    +     +             V+ +V+      
Sbjct: 1   MK-RREAREVALQALFQMELNEMSFEQAVSNVMPEEQDD--------YVKKLVSGVDTHK 51

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  ++  L +    R       +LR+SV ++ Y  D+ D   ++ A+E +K    + 
Sbjct: 52  ADIDTAIEAHLDNWRKDRLNKVDLSILRLSVFEMKYCEDIPDRVSLNEAIEISK-VYSDE 110

Query: 119 HFAKLVNSILRR 130
             +K +N +L  
Sbjct: 111 KSSKFINGVLAN 122


>gi|332808867|ref|XP_003308124.1| PREDICTED: putative methyltransferase NSUN4 [Pan troglodytes]
          Length = 384

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 363

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   +RRL 
Sbjct: 364 VIPNLMANFGP-------MYFCKMRRLT 384


>gi|40316918|ref|NP_950245.2| putative methyltransferase NSUN4 [Homo sapiens]
 gi|152125805|sp|Q96CB9|NSUN4_HUMAN RecName: Full=Putative methyltransferase NSUN4; AltName:
           Full=NOL1/NOP2/Sun domain family member 4
 gi|56204053|emb|CAI21962.1| NOL1/NOP2/Sun domain family, member 4 [Homo sapiens]
 gi|119627325|gb|EAX06920.1| hCG2031650, isoform CRA_h [Homo sapiens]
 gi|261860580|dbj|BAI46812.1| NOL1/NOP2/Sun domain family, member 4 [synthetic construct]
          Length = 384

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 363

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   +RRL 
Sbjct: 364 VIPNLMANFGP-------MYFCKMRRLT 384


>gi|121611696|ref|YP_999503.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2]
 gi|121556336|gb|ABM60485.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2]
          Length = 176

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 4/120 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR  +   L   +          D++          + D    + +++  +     
Sbjct: 33  PRSRAREFALQALYQHLVGG---NDAADIDEFTRGLAGFHKADAAHYQTLLHGCIGAAAD 89

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           IDA++  +L   L       +  + + V +  +  DV    V++  +E AK         
Sbjct: 90  IDALIVPLLDRQLIAISPIERATMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHK 149


>gi|295698399|ref|YP_003603054.1| transcription antitermination factor NusB [Candidatus Riesia
           pediculicola USDA]
 gi|291157256|gb|ADD79701.1| transcription antitermination factor NusB [Candidatus Riesia
           pediculicola USDA]
          Length = 140

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR+++   L          + ++         + +   D    + I   T   + +I
Sbjct: 5   RHKARIMAVQALYSWQISGTKNSLIVVDFLNMIQSKKID-VDIEYFKKIFIGTSNKVSKI 63

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           D  L      +L       + +LR+ V ++LY+ +    +++ A+E +K+    R + 
Sbjct: 64  DQKLFRHTSRALKLIDQIEKAILRLGVFELLYIKIPYKVIINEAIELSKKFGSERSYK 121


>gi|291326906|ref|ZP_06126293.2| transcription antitermination factor NusB [Providencia rettgeri DSM
           1131]
 gi|291312467|gb|EFE52920.1| transcription antitermination factor NusB [Providencia rettgeri DSM
           1131]
          Length = 149

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +         +  +      +   + +S  D    R +++       ++D ++ 
Sbjct: 22  ECAVQAIYSWQLSGNPIAEVEYEFIAE---QDMSDVDVNYFRELLSGVATNATKLDQLMA 78

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LRVS+ ++ +  DV     ++  +E AK         K VN +
Sbjct: 79  PYLSRQLEELGQVEKAILRVSMFELSFREDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 137

Query: 128 LRR 130
           L +
Sbjct: 138 LDK 140


>gi|146304848|ref|YP_001192164.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145703098|gb|ABP96240.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348]
          Length = 363

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 123/347 (35%), Gaps = 38/347 (10%)

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
           D   E +++   + +      ++  + +R+K+           +P W  E L+     + 
Sbjct: 40  DEMFELSRKLVLSYY------ALEGKSARKKVTSFLNKGSKVSLPPWMSEELKELIDLDA 93

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFA 219
            L  ++      +    +  D +     L    +            + +  +I     F 
Sbjct: 94  YLKSAELGRYKWFRVNRILADEDDVLSSLETQGIKFERDEDFNYLFRVISGNITKTKEFD 153

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRL 276
           +    VQD ++   VQ  G      +L+L +APG K     +L      +   +++ +RL
Sbjct: 154 DFKIIVQDKASVAVVQALGPEKGDVILELASAPGLKAELIYELTQGDVYLILAELNHKRL 213

Query: 277 EKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRD 333
           +K    L  L +     D I  D+         D VL+DAPCSS+G   + P VL   RD
Sbjct: 214 DKEIKLLSTLGVDLGKVDFINQDSTRNS-VLRADKVLIDAPCSSSGIFYKEPTVLLTLRD 272

Query: 334 TDDIVKSACFQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
            D +   +  Q+ ++ +  +   K     V+S CS+  ++ E ++           E V 
Sbjct: 273 RDKVENFSKLQKLMIKEAFNISFKKA---VYSVCSIFPEEGEVIMD----------EYVD 319

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                             G +        +  G   G + FF   LR
Sbjct: 320 KLMTTEVGGIEGYGKHKSGKL------SRRYFGHIHGTEDFFIATLR 360


>gi|254488295|ref|ZP_05101500.1| transcription antitermination factor NusB [Roseobacter sp. GAI101]
 gi|214045164|gb|EEB85802.1| transcription antitermination factor NusB [Roseobacter sp. GAI101]
          Length = 159

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     S   +                 +   D      ++  
Sbjct: 15  MKS--ASRLYAVQALFQMEHSSQSFDTVRTEFLEHRFGATYDGAEMIDGDIRHFADVLET 72

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +   ID + D  L     + R   +L+ L R + A++         V+   V+ A+ 
Sbjct: 73  AVNYQAAIDQMTDRALVAKWPIARIDPTLRALFRAAGAELRDTGTPPKVVITEYVDVARA 132

Query: 114 DKENRHFAKLVNSILRRV 131
             E     K VN++L  +
Sbjct: 133 FFEGSDEPKFVNAVLDHM 150


>gi|15680185|gb|AAH14441.1| NOL1/NOP2/Sun domain family, member 4 [Homo sapiens]
          Length = 384

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 363

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   +RRL 
Sbjct: 364 VIPNLMANFGP-------MYFCKMRRLT 384


>gi|240170738|ref|ZP_04749397.1| transcription antitermination protein NusB [Mycobacterium kansasii
           ATCC 12478]
          Length = 174

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 2/163 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR  +  +L     + +S   +++     +A +           A+         
Sbjct: 11  KGRHQARKRAVDVLFEAEARGMSPLEVVESRTALAAAKPEVAPLHPYTAAVARGVSEDAA 70

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            ID ++   L   +L R     + +LRVSV ++L+  DV +   VD AVE AK    +  
Sbjct: 71  HIDDLIAAHLQGWTLDRLPAVDRAILRVSVWELLHADDVPEPVAVDEAVELAKELSTDES 130

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162
              +   + + +           A    +P   +   EN    
Sbjct: 131 PGFVNGVLGQVMLVTPQIRAAAHAVRQAVPGDAERLPENQGSC 173


>gi|25008871|sp|Q8K9A2|NUSB_BUCAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21623355|gb|AAM67990.1| N utilization substance protein B [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 138

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  +L      + ++         +   + +   D I    ++         I
Sbjct: 8   RRKARACALQMLYSWEISQNNIKDSAIEFLKEKNKKNI---DIIYFYELIIGITYNCRSI 64

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122
           D ++   L  SL       + +LR+S  ++    D+     ++  +E AK    +    K
Sbjct: 65  DDLMKPYLSRSLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELAK-LFGSEDSHK 123

Query: 123 LVNSILRR 130
            +N +L +
Sbjct: 124 FINGVLDK 131


>gi|300022490|ref|YP_003755101.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524311|gb|ADJ22780.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 170

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
              L  +      L  ++          D+   +L+  D++    I+   +R    ID +
Sbjct: 23  VQALYQMDMAGTDLNDVIAEFLNERLSGDNRDEMLAGADRVFFADILRAVVRRQREIDPM 82

Query: 67  LDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +D  L     L R    L+ +LR  VA+++   DV     +   V  A R   +    ++
Sbjct: 83  IDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVA-RVFFDEEEPRV 141

Query: 124 VNSILRR 130
           VN +L +
Sbjct: 142 VNGVLDK 148


>gi|228475963|ref|ZP_04060671.1| transcription antitermination factor NusB [Staphylococcus hominis
           SK119]
 gi|314936353|ref|ZP_07843700.1| transcription antitermination factor NusB [Staphylococcus hominis
           subsp. hominis C80]
 gi|228269786|gb|EEK11266.1| transcription antitermination factor NusB [Staphylococcus hominis
           SK119]
 gi|313654972|gb|EFS18717.1| transcription antitermination factor NusB [Staphylococcus hominis
           subsp. hominis C80]
          Length = 128

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R  +   L  +  K   LT    + +    +  L   D   +  +V         
Sbjct: 2   SRKESRKQAFQTLFQLEMKNTDLTINEAINFIKDDYPDL---DFEFIHWLVTGVKDHEQV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  ++  L   S+ R   + + +LR++  ++L+ D     +++ AVE  K+   +    
Sbjct: 59  LDQSIEPKLKDWSIQRLLKTDRIILRMATFELLHSDTPPKVIINEAVELTKQF-SDEGHY 117

Query: 122 KLVNSILRR 130
           K +N +L  
Sbjct: 118 KFINGVLSN 126


>gi|79547453|ref|NP_201419.2| unknown protein [Arabidopsis thaliana]
 gi|332010788|gb|AED98171.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 395

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 22/145 (15%)

Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDDIVKSACFQRKLLLQGISFVK 356
           +D VLVDA C+  G+I+       W                      Q  LL  G   +K
Sbjct: 253 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 312

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
             G +V+S CSL    +E+VV + L  +              K        +P   +R  
Sbjct: 313 EAGTLVYSTCSLTHAQNEDVVDQFLSEN---FSAELQEIEMAKDWPCRSGRTP-KTLRFD 368

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P              G F   +R+L
Sbjct: 369 PSTSATS--------GLFVAKIRKL 385


>gi|116625277|ref|YP_827433.1| NusB antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122252386|sp|Q01T72|NUSB_SOLUE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116228439|gb|ABJ87148.1| NusB antitermination factor [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 146

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             +L     ++  +   ++  Y         +RD   V  +V  T+  L  +D  +    
Sbjct: 12  LQILFIWDARKQPVEDAINAYYDTLYSDEKPERD-PFVIDLVRGTVEHLAEVDDRITRHA 70

Query: 72  IS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
               + R     + +LR++V ++          +D A+E A++   N    + VN +L  
Sbjct: 71  EHWRMERMPAVDRNILRLAVYEMTRGGTPAPVTIDEALELARKF-SNEESVQFVNGVLDA 129

Query: 131 VSREKIELLQRIA 143
           V RE  E     A
Sbjct: 130 VRREMPEPNAPPA 142


>gi|154149182|ref|YP_001405652.1| transcription antitermination protein NusB [Campylobacter hominis
           ATCC BAA-381]
 gi|166215676|sp|A7HZG1|NUSB_CAMHC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|153805191|gb|ABS52198.1| transcription antitermination factor NusB [Campylobacter hominis
           ATCC BAA-381]
          Length = 131

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 6/131 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL         +   +     +   R      +     + N   + +
Sbjct: 1   MATRHQVRNAVVSLLYAKEM-GSEMNDFVSEYLEEKRIRN---DQRKFADKLFNGVCKNV 56

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +ID  LD  L    + +     + +LR+   +I+Y  +    +++ A+E AK       
Sbjct: 57  NQIDNELDKYLNEYKISQIGTVERAILRLGAYEIMYEAIDKAIIINEAIELAKELAG-ES 115

Query: 120 FAKLVNSILRR 130
             K +N +L R
Sbjct: 116 SPKFINGVLDR 126


>gi|212716890|ref|ZP_03325018.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM
           16992]
 gi|225350765|ref|ZP_03741788.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212660175|gb|EEB20750.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM
           16992]
 gi|225158221|gb|EEG71463.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 147

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  + + L     K   +  LL         +            IV      +  ID+ 
Sbjct: 6   ARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPE---YAIEIVRGVAEHIAAIDST 62

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           LD       + R     + +LR++  +I++  DV +   +D A+  AK   ++   A
Sbjct: 63  LDEHSTGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALGLAKTLCDDESPA 119


>gi|320540317|ref|ZP_08039969.1| transcription antitermination protein [Serratia symbiotica str.
           Tucson]
 gi|320029637|gb|EFW11664.1| transcription antitermination protein [Serratia symbiotica str.
           Tucson]
          Length = 138

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E+     + ++  D    R + +        +D ++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEHQFLTEQDVNGVDIAYFRELFSGVAVNAGMLDTLMV 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++ +  DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLDELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|330838907|ref|YP_004413487.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185]
 gi|329746671|gb|AEC00028.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185]
          Length = 140

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 3   SGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVT 56
           S   AR  +   L  +        +      +   D+A   +    +RD     ++V  T
Sbjct: 2   SRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRGT 61

Query: 57  LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKR 113
              L  ID  +        L R     + ++R+++ ++ Y    V     ++ AVE AK+
Sbjct: 62  REHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKK 121

Query: 114 DKENRHFAKLVNSI 127
                  ++ VN I
Sbjct: 122 F-GTDDSSRYVNGI 134


>gi|189219673|ref|YP_001940314.1| transcription termination protein NusB [Methylacidiphilum
           infernorum V4]
 gi|259514863|sp|B3DWQ3|NUSB_METI4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189186531|gb|ACD83716.1| Transcription termination protein NusB [Methylacidiphilum
           infernorum V4]
          Length = 143

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 7/147 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M S    R +    L        + L  +L        F  L Q+D+  V   +      
Sbjct: 1   MISRRKIRELIVQFLYQWEMNKGVGLDNML---LDFWDFSPLDQKDKEAVEQWLKEIAEH 57

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              I+  ++  + + SL R     + +L + + +ILY  D+     ++ +VE AK+    
Sbjct: 58  KEAIEEKINSYVKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIAKKY-ST 116

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAG 144
               K VN IL  V ++          
Sbjct: 117 EESGKFVNGILDSVLKDSGRKAWMSCP 143


>gi|119952909|ref|YP_945118.1| transcription antitermination protein NusB [Borrelia turicatae
           91E135]
 gi|119861680|gb|AAX17448.1| N utilization substance protein B [Borrelia turicatae 91E135]
          Length = 146

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR+++   +  +     +   + D+   +     L +  ++    +VN T   L
Sbjct: 3   MDLRHKARVLAFQKIYSIDINCKAKDNIYDIFNLEDHGLELEENLKLFYSVLVNGTYDNL 62

Query: 61  PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117
             ID ++  + L   L R       +LR+SV  + +  LDV    ++D A+  AK+   +
Sbjct: 63  EFIDKLISDISLNWRLDRMDKVDLAILRMSVYSLKFQNLDVPKRVIIDEAILIAKKY-GS 121

Query: 118 RHFAKLVNSILRRVSREK 135
           ++  K VN IL  + +  
Sbjct: 122 KNSYKFVNGILDALLKNM 139


>gi|300741572|ref|ZP_07071593.1| transcription antitermination factor NusB [Rothia dentocariosa
           M567]
 gi|311113665|ref|YP_003984887.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC
           17931]
 gi|300380757|gb|EFJ77319.1| transcription antitermination factor NusB [Rothia dentocariosa
           M567]
 gi|310945159|gb|ADP41453.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC
           17931]
          Length = 136

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   ARL +  +L    +++  +  +L      +A ++           IV       
Sbjct: 1   MNSRTKARLRAVEVLFEADQRQEDIIDVLKRRRLHTAAQIS-----AYAEEIVRGVREHD 55

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             I   L+      S  R     + +LR+   ++LY  DV D   +  A   A+    N 
Sbjct: 56  DEIREYLETYARDWSFERMPAVDRVILRIGAWELLYNDDVPDAVAISEATGLARVLSTND 115

Query: 119 HFAKLVNSILRR 130
              K VN +L +
Sbjct: 116 S-PKFVNGLLDK 126


>gi|253995875|ref|YP_003047939.1| NusB antitermination factor [Methylotenera mobilis JLW8]
 gi|253982554|gb|ACT47412.1| NusB antitermination factor [Methylotenera mobilis JLW8]
          Length = 178

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   +R +    +   M     L+ +      D  +   ++ D+   + ++      L 
Sbjct: 38  QNRRKSRELVLKAVYRGMLNDSELSQVFRDMRDDPDY---NKADEAYFKHLLQAVTENLT 94

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            ID  +   +  +L         +LR++  ++++ L +    V++  VE AK        
Sbjct: 95  AIDGKIVGFIDRTLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVELAKVFGGTDG- 153

Query: 121 AKLVNSILRRV 131
            K +N +L + 
Sbjct: 154 HKYINGVLDKF 164


>gi|42527665|ref|NP_972763.1| NOL1/NOP2/sun family protein [Treponema denticola ATCC 35405]
 gi|41818493|gb|AAS12682.1| NOL1/NOP2/sun family protein [Treponema denticola ATCC 35405]
          Length = 263

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 86/236 (36%), Gaps = 22/236 (9%)

Query: 216 PGFAEGVW--WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK-------TAQLIVSGAKV 266
             ++E +   +  D ++    +    L   S LD+CAAPGGK         +     A  
Sbjct: 38  EAYSENLIQNYYLDYASIQAARAMPVLEEGSCLDMCAAPGGKTLVLLSRIKENAEIQANE 97

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRR 324
            + D   R +  L  +L         +   DA          +D +L+DAPCSS   + +
Sbjct: 98  LSADRRNRLIRVLDEHLSEETRKRIRVSSYDASRMPRYGQELYDRILLDAPCSSERHVLQ 157

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           +   L       I   +  Q  LL      +KP G +V+S C+L  ++++ +++K+++  
Sbjct: 158 NEKYLKQWTEARIKNLSQRQWALLSAAFLLLKPKGFLVYSTCALADEENDFLIEKLIKKY 217

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              V L                       R  PD  E    +       +   +++
Sbjct: 218 KEKVRLEEKLDGLGPISPEKTRY----GFRFLPDKAEGAGPI-------YFSLIQK 262


>gi|237752651|ref|ZP_04583131.1| transcription termination protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376140|gb|EEO26231.1| transcription termination protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 199

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 7/168 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +  +AR+  + LL         ++  ++    +   +          + + N  L  L
Sbjct: 1   MATRTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIKNAQNE---FAKTLFNGVLEHL 57

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK---E 116
             +D  +   + +    R     + +LR+   +I++  +    V++ A+E  K       
Sbjct: 58  EEVDLRIKHQIKNWDFERIGDMERAILRLGAYEIIFSGMDKAIVINEALEITKNFSNETS 117

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
            +    +++ I +  +     + ++ A    I     E   N  G E+
Sbjct: 118 TKFINGILDGIAKNATLSVDSIKEQEAHKQEINNLETENTPNSKGFEK 165


>gi|56693371|ref|NP_001008649.1| NOL1/NOP2/Sun domain family, member 4 [Danio rerio]
 gi|56269713|gb|AAH86725.1| NOL1/NOP2/Sun domain family, member 4 [Danio rerio]
          Length = 327

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 35/284 (12%)

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLF 237
             D            +      L      I               +++ DA++ +PV   
Sbjct: 53  HNDSSDVESAPLQTSITPDIKCLVFPRGDISRFKPARPDSSGILGYYLLDAASVLPVLAL 112

Query: 238 GTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSK------RRLEKLRCNLDRLHLY 289
                 +VLDLCAAPGGKT       S   + A D+S       R++ +     + L   
Sbjct: 113 DVRPGQTVLDLCAAPGGKTLALLQAHSVNHLWANDLSVSRTGRLRKILQSYVPKECLDEE 172

Query: 290 AEDIIEMDAFD--YCPKKLFDAVLVDAPCS---STGTIRRHPDVLWTRDTDDIVKSACFQ 344
              I  +D  +     +K FD VLVD PC+    +  +  +     +R   +  K    Q
Sbjct: 173 NIHITCIDGRELGMREEKSFDRVLVDVPCTTDRHSAVVEENNIFKRSRTK-ERQKLPLLQ 231

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-------ELVPLNSAY 397
            +LL+ GI   + GG++V+S CSL +  +E VVQ+ +  +   +       +L      +
Sbjct: 232 IQLLVAGIQAARQGGLIVYSTCSLSQLQNECVVQQAISVAQEELGITVQVQDLRWFTQRF 291

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +   A  LS  G + + P +      +       +   L+R+
Sbjct: 292 SDTFHFAPQLSV-GEL-VLPHLCANFGPI-------YMCKLQRM 326


>gi|84502770|ref|ZP_01000889.1| transcription antitermination factor NusB [Oceanicola batsensis
           HTCC2597]
 gi|84389165|gb|EAQ01963.1| transcription antitermination factor NusB [Oceanicola batsensis
           HTCC2597]
          Length = 166

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     ++  ++                +++ D  L RA +  
Sbjct: 22  MKS--ASRLYAVQALFQMEAIGQTVERVIAEFEDHRFGAVYEGDEMAEGDIDLFRATMAD 79

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +  RID + D  L     + R   +L+ L R + A+++  D     V+   V+ A  
Sbjct: 80  AVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSDTPPKVVIKEYVDVASA 139

Query: 114 DKENRHFAKLVNSILRRV 131
                   + VN++L  +
Sbjct: 140 FFPEGREPRFVNAVLDHM 157


>gi|296532920|ref|ZP_06895581.1| transcription antitermination factor NusB [Roseomonas cervicalis
           ATCC 49957]
 gi|296266750|gb|EFH12714.1| transcription antitermination factor NusB [Roseomonas cervicalis
           ATCC 49957]
          Length = 170

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 11/128 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ--------RDQILVRAIV 53
           +    +R+ +   L    +   S   ++D                      D  L   +V
Sbjct: 20  RPRTGSRVAAIQALFQSEQSGESAETVIDQFVRFRIGPDAGGFEDGRVPLADVPLFAGVV 79

Query: 54  NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQ 110
               R    +D +L   L    ++ R    L+ LLR +  ++    +     V++  ++ 
Sbjct: 80  RGVARQSEALDGILQGHLAGDWTVARLDPVLRALLRAAAHELSSGTEPPARVVINEYMDI 139

Query: 111 AKRDKENR 118
           A       
Sbjct: 140 AHGFFSGE 147


>gi|294635301|ref|ZP_06713799.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC
           23685]
 gi|291091310|gb|EFE23871.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC
           23685]
          Length = 139

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   + + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQISK---NDIADVEYQFLSEQDVKDVDVNYFRELLSGVASNADYLDGLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LRVS+ ++    DV     ++  VE AK         K VN +
Sbjct: 68  PVLSRQLDELGQVEKAILRVSIYELSKRQDVPYKVAINEGVELAKTF-GAEDSHKFVNGV 126

Query: 128 LRRVSRE 134
           L +++ +
Sbjct: 127 LDKIAPQ 133


>gi|330834052|ref|YP_004408780.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566191|gb|AEB94296.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 356

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 100/303 (33%), Gaps = 30/303 (9%)

Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-----AVMLPTGG 202
           +P W  E+L      +  L       +  +    +  D +     L       +      
Sbjct: 67  LPSWMDEQLRYLIDLDNYLKNLVKKKTQWFRVNRILGDEDKVLKSLELQDIEFIRDNDFN 126

Query: 203 IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQL 259
              K    +I     F E    +QD ++   V+         VLD+ ++PG K     +L
Sbjct: 127 YVYKITKGNITKTKEFTENKVILQDKASVAVVEALRPEPGDVVLDMASSPGLKAELIYEL 186

Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKKLFDAVLVDAPCSS 318
                 +   +    RL K    L  L +    +   +           D VL+DAPCSS
Sbjct: 187 TQGEISLVLAEFYMHRLSKEMRLLKELGVNPSSLNFIVQDSTSNSIVRVDKVLIDAPCSS 246

Query: 319 TGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEV 376
           +GT+   P VL T    + +   +  Q+ +L +  +   K G   V+S CS+  ++ E +
Sbjct: 247 SGTLSDDPTVLITLSTKEKVNLFSRVQKAMLRETFNIRFKKG---VYSVCSIFPEEGEMI 303

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           V+++        +   + +    S             R                D FF  
Sbjct: 304 VEEI--------KDRLVKTGLPGSTGYPNFSVGNLCTR--------YFNFIDETDDFFIA 347

Query: 437 ALR 439
             +
Sbjct: 348 KFK 350


>gi|317492962|ref|ZP_07951386.1| transcription antitermination factor NusB [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919084|gb|EFV40419.1| transcription antitermination factor NusB [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 139

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   + + +   D    R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQISK---NDIADVEYQFLSEQDVKDVDISYFRELLSGVATNAEYLDGLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            VL   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PVLSRQLEELGQVERAVLRISLFELSKREDVPYKVAINEGIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|114771638|ref|ZP_01449042.1| transcription antitermination factor NusB [alpha proteobacterium
           HTCC2255]
 gi|114547710|gb|EAU50600.1| transcription antitermination factor NusB [alpha proteobacterium
           HTCC2255]
          Length = 151

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-----QILVRAIVNV 55
           MKS   +RL +   L  +      +  + D          L   +       L   ++  
Sbjct: 7   MKS--ASRLYAVQALFQMEASEQGMNEVRDQFVNHRFGATLEGEEYVEGNVELFEQLLFT 64

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +     ID + D  L     + R   +L+ L R + A+ +  D      +   V+ AK 
Sbjct: 65  AVNQQAAIDQMTDRALVAKWPIDRIDPTLRALFRTAGAEFIIDDTPPKVAIVEFVDVAKA 124

Query: 114 DKENRHFAKLVNSILRRVSREKIELLQ 140
              + +  + VN+IL  ++RE      
Sbjct: 125 FFPDGNETRFVNAILDHMAREVHPDKF 151


>gi|56477452|ref|YP_159041.1| transcription antitermination protein NusB [Aromatoleum aromaticum
           EbN1]
 gi|81598767|sp|Q5P3H4|NUSB_AZOSE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|56313495|emb|CAI08140.1| N utilization substance protein B,transcription termination factor
           [Aromatoleum aromaticum EbN1]
          Length = 145

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +   +    S   +L +E   S      + D+ L  +++  TL  +  + A   
Sbjct: 12  EFALQGIYQWLL---SANSMLLIEEHVSQVSGFDKADRELFISLLRGTLNNVDDLQAEFA 68

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             +  ++       + +L ++  ++ + LD     +++ A+E AK         + VN +
Sbjct: 69  PFIHRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGTDG-HRFVNGV 127

Query: 128 LRR 130
           L +
Sbjct: 128 LDK 130


>gi|254498159|ref|ZP_05110911.1| transcription termination factor NusB [Legionella drancourtii
           LLAP12]
 gi|254352625|gb|EET11408.1| transcription termination factor NusB [Legionella drancourtii
           LLAP12]
          Length = 147

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR ++   L          + + ++E        +S+ D      ++      +  ++ 
Sbjct: 11  KARKLALQALYQWFMSG---SEVSEIEAQFRLINNMSKVDVDYFCRLLYGIPEHINELEN 67

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
                L   +         +LR+   ++ +  +V    V+D A+   K    ++   + V
Sbjct: 68  SFSPFLDREVHELNPIELTVLRLGSFELFHCPEVPYKVVLDEAISLTKEF-GSQDGYRYV 126

Query: 125 NSILRR 130
           N +L  
Sbjct: 127 NGVLNN 132


>gi|49483774|ref|YP_040998.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282904107|ref|ZP_06311995.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905934|ref|ZP_06313789.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908844|ref|ZP_06316662.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|283958289|ref|ZP_06375740.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295428103|ref|ZP_06820735.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297590931|ref|ZP_06949569.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|56749229|sp|Q6GGH4|NUSB_STAAR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49241903|emb|CAG40597.1| putative N utilization substance protein B [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282327108|gb|EFB57403.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331226|gb|EFB60740.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595725|gb|EFC00689.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790438|gb|EFC29255.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295128461|gb|EFG58095.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575817|gb|EFH94533.1| transcription antitermination factor NusB [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315195426|gb|EFU25813.1| transcription antitermination protein NusB [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 129

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   LT    + +       L   D   +  +V+      P 
Sbjct: 2   SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDL---DFEFIHWLVSGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   ++ R   + + +LR++  +IL+ D     V++ AVE  K+  ++ H+ 
Sbjct: 59  LDETISPNLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118

Query: 122 KLVNSILRR 130
             +N +L  
Sbjct: 119 -FINGVLSN 126


>gi|293364851|ref|ZP_06611568.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
 gi|307703100|ref|ZP_07640047.1| transcription antitermination factor NusB [Streptococcus oralis
           ATCC 35037]
 gi|315612604|ref|ZP_07887517.1| transcription antitermination factor NusB [Streptococcus sanguinis
           ATCC 49296]
 gi|322374852|ref|ZP_08049366.1| transcription antitermination factor NusB [Streptococcus sp. C300]
 gi|331266955|ref|YP_004326585.1| transcription antitermination protein NusB [Streptococcus oralis
           Uo5]
 gi|291316301|gb|EFE56737.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
 gi|307623493|gb|EFO02483.1| transcription antitermination factor NusB [Streptococcus oralis
           ATCC 35037]
 gi|315315585|gb|EFU63624.1| transcription antitermination factor NusB [Streptococcus sanguinis
           ATCC 49296]
 gi|321280352|gb|EFX57391.1| transcription antitermination factor NusB [Streptococcus sp. C300]
 gi|326683627|emb|CBZ01245.1| transcription antitermination protein NusB [Streptococcus oralis
           Uo5]
          Length = 140

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 8   SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLTELVSGVQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 66  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|223043157|ref|ZP_03613204.1| transcription antitermination factor NusB [Staphylococcus capitis
           SK14]
 gi|314933698|ref|ZP_07841063.1| transcription antitermination factor NusB [Staphylococcus caprae
           C87]
 gi|222443368|gb|EEE49466.1| transcription antitermination factor NusB [Staphylococcus capitis
           SK14]
 gi|313653848|gb|EFS17605.1| transcription antitermination factor NusB [Staphylococcus caprae
           C87]
          Length = 129

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R+ +   L  +  K   L+    + +    +  L   D   +  +V         
Sbjct: 2   SRKESRIQAFQTLFQLEMKESDLSITEAINFIKDDYPDL---DFDFINWLVTGVKDHEAV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D      L   S+ R   S + +LR++  ++L+ D  +  +++ AVE  K+   +    
Sbjct: 59  LDEKFKPYLKDWSIERLLKSDRIILRMATFEMLHSDTPEKVIINEAVELTKQF-SDDGHY 117

Query: 122 KLVNSILRRVSR 133
           K +N +L  ++ 
Sbjct: 118 KFINGVLSNINN 129


>gi|34497846|ref|NP_902061.1| transcription antitermination protein NusB [Chromobacterium
           violaceum ATCC 12472]
 gi|39931749|sp|Q7NVF2|NUSB_CHRVO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|34103702|gb|AAQ60063.1| N utilization substance protein B [Chromobacterium violaceum ATCC
           12472]
          Length = 149

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    AR  +   +            L++    ++ +   ++ D+ L R+I+   L+ 
Sbjct: 1   MKTARRRAREFAVQGIYEWELNPDRPASLIEKHLRENEY--FAKADEALFRSILYGVLKD 58

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
           +  + A +      +        + +L ++  ++    +     +++ A+E  K      
Sbjct: 59  VELLSAQVGRYYERAEDEVSPVERAVLLMAALELTQSPETPYPVIINEAIEITKTFGGTD 118

Query: 119 HFA 121
              
Sbjct: 119 GHK 121


>gi|159489346|ref|XP_001702658.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280680|gb|EDP06437.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 367

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 304 KKLFDAVLVDAPCSSTGTIR-RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           + +FD VLVDAPCS  G ++   PD       + + + +  QR+LLL+G++ + PGG++V
Sbjct: 158 EGVFDRVLVDAPCSGLGRLQLGRPDSYSHWQPEAVRRYSRRQRQLLLRGVTLLAPGGLLV 217

Query: 363 FSNCSLDKQDSEEVVQKVLRS 383
           +S C++  +++E+V+  +L  
Sbjct: 218 YSTCTMLAEENEQVLAWLLGR 238


>gi|255318080|ref|ZP_05359325.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SK82]
 gi|262380575|ref|ZP_06073729.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SH164]
 gi|255304903|gb|EET84075.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SK82]
 gi|262298021|gb|EEY85936.1| transcription antitermination factor NusB [Acinetobacter
           radioresistens SH164]
          Length = 149

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   +         +  +      ++A   +   D      ++   +    
Sbjct: 10  AAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLGYYHELLTQVVAQHE 66

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            +D +L  VL   L          LR+   ++  +L++    V+D A+E AK        
Sbjct: 67  ALDTLLVPVLDRELGALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADS 125

Query: 121 AKLVNSILRR 130
            K +N +L R
Sbjct: 126 HKYINGVLDR 135


>gi|226311922|ref|YP_002771816.1| N utilization substance protein B [Brevibacillus brevis NBRC
           100599]
 gi|226094870|dbj|BAH43312.1| N utilization substance protein B [Brevibacillus brevis NBRC
           100599]
          Length = 137

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR      L  +    + LT  + L   +S            +R +++  L+ L
Sbjct: 4   MKRRT-AREKVVQCLFQIDMAEVPLTDAVALVMEESEEN------AQYLRYLLDGVLKNL 56

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             IDA +   L    L R     + +LR++  +I++  D  D  V++ A+E AK    + 
Sbjct: 57  TEIDAEIKKYLRGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAK-LFSDE 115

Query: 119 HFAKLVNSILRRV 131
              + +N +L   
Sbjct: 116 QSHRYINGVLSSF 128


>gi|253746079|gb|EET01595.1| tRNA/rRNA cytosine-C5-methylase [Giardia intestinalis ATCC 50581]
          Length = 458

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 130/434 (29%), Gaps = 64/434 (14%)

Query: 53  VNV-TLRFLPRIDAVLDFVLISSLPRKKYSLQQ--LLRVSVAQILYLDVADYA-----VV 104
           V    LR L   D +L   +         +L+   +L ++   +L   +         V 
Sbjct: 37  VYALALRALGHAD-LLKDTITRLAKANDTTLEHNHVLVMATEALLGDGIPHRRRRLEGVT 95

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
             A+   K              +L++      +     +    +P   +  L+     E 
Sbjct: 96  RDALRIVKTHM------PEFACLLKKPDTATTKSRSNASAAPYLPRALRVNLDRREYPEI 149

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAEGV 222
                   ++    +  V    +   ++L      T    LK+     +  S   F    
Sbjct: 150 NDEADRVRLTLEAEEQCVLRVQDQLRNELPPEAKLTRHPILKDFLLVSAPNSKIPFHNLW 209

Query: 223 WWVQDASASIPVQLFGTL--------------NNLSVLDLCAAPGGKTAQLIVSGAKVTA 268
               + +    +     L               N+ VLD+CAAPG KT Q     + V A
Sbjct: 210 VVKTNQAIMQSLASGLPLAALREAAIKLLPSLKNVCVLDVCAAPGSKTFQACNYFSGVHA 269

Query: 269 LDVSKRRLEKLRCNLDRLHLY--------------AEDIIEMDAFDYCPKKLFDAVLVDA 314
            D+ +RR E +      L                    +I  +            ++ D 
Sbjct: 270 NDLDRRRCEIILKRGKELISTKAVRSTNIVAGLPINSLVITSNDALRLKDTGCQIIVCDP 329

Query: 315 PCSSTGTIRRHPDVL-----WTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCS 367
            CSS+G        L      T+   D  + + FQ KLL +     K P  ++V +S CS
Sbjct: 330 TCSSSGVYGNKDSTLAEAAGVTKSHADPAELSSFQIKLLTRL--LTKFPSAVLVSYSTCS 387

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           +   ++E+VV  VL       E   L +A  +                 P          
Sbjct: 388 IHSVENEDVVAAVLNDETGISEEWELWNALPEWPMRGKK----------PYTYCLRADKR 437

Query: 428 SGMDGFFAVALRRL 441
              DGFF     R 
Sbjct: 438 QQTDGFFTAIFIRK 451


>gi|331006273|ref|ZP_08329591.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC1989]
 gi|330419920|gb|EGG94268.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC1989]
          Length = 152

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR      L        +L  +    + D+    ++  D      +V+     + 
Sbjct: 11  ATRRKARHFGMQALYQWSMTGAALNEIEAEFHVDN---DMTHTDTDYFHELVHEIPARVT 67

Query: 62  RIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            +D      L   S+         LLR++  ++ + +DV    V++ AV  AK+      
Sbjct: 68  ELDEAYFPHLQDRSVEELDPVTLSLLRLATYELAHRIDVPYKVVINEAVSLAKKFGATDS 127

Query: 120 FA 121
           F 
Sbjct: 128 FK 129


>gi|306828961|ref|ZP_07462153.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
           6249]
 gi|304429139|gb|EFM32227.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
           6249]
          Length = 140

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 8   SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLTELVSGVQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 66  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLGQF 135


>gi|45773930|gb|AAS76769.1| At5g66180 [Arabidopsis thaliana]
 gi|51968870|dbj|BAD43127.1| unnamed protein product [Arabidopsis thaliana]
          Length = 395

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 47/145 (32%), Gaps = 22/145 (15%)

Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDDIVKSACFQRKLLLQGISFVK 356
           +D VLVDA C+  G+I+       W                      Q  LL  G   +K
Sbjct: 253 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 312

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
             G +V+S CSL    +E VV + L  +              K        +P   +R  
Sbjct: 313 EAGTLVYSTCSLTHAQNEGVVDQFLSEN---FSAELQEIEMAKDWPCRSGRTP-KTLRFD 368

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P              G F   +R+L
Sbjct: 369 PSTSATS--------GLFVAKIRKL 385


>gi|149187999|ref|ZP_01866294.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
 gi|148837987|gb|EDL54929.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
          Length = 155

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50
            +  NAR  +   +      + ++  + +       +               + D +  R
Sbjct: 8   AARRNARQFALQAIYSWQITKENVATVEEQFLSGGKYDEEEHHAAEPALTAPETDVVYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVE 109
            ++         +D+ L   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLTGVALNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTSREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|301330723|ref|ZP_07223325.1| transcription antitermination factor NusB [Escherichia coli MS
           78-1]
 gi|300843384|gb|EFK71144.1| transcription antitermination factor NusB [Escherichia coli MS
           78-1]
          Length = 139

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R ++         +D ++ 
Sbjct: 11  ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTASLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|30410822|ref|NP_660779.2| transcription antitermination protein NusB [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
          Length = 142

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 13/139 (9%)

Query: 1   MKSGM--------NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           M+  M         AR  +  +L      + ++         +   + +   D I    +
Sbjct: 1   MRKQMIIKPNFRRKARACALQMLYSWEISQNNIKDSAIEFLKEKNKKNI---DIIYFYEL 57

Query: 53  VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQA 111
           +         ID ++   L  SL       + +LR+S  ++    D+     ++  +E A
Sbjct: 58  IIGITYNCRSIDDLMKPYLSRSLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELA 117

Query: 112 KRDKENRHFAKLVNSILRR 130
           K    +    K +N +L +
Sbjct: 118 K-LFGSEDSHKFINGVLDK 135


>gi|159037466|ref|YP_001536719.1| NusB antitermination factor [Salinispora arenicola CNS-205]
 gi|189035900|sp|A8LY11|NUSB_SALAI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157916301|gb|ABV97728.1| NusB antitermination factor [Salinispora arenicola CNS-205]
          Length = 136

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  +  +L     +      +L                      +V      L
Sbjct: 1   MPARRKARKRALDVLFEADLRDRPPVEVLAGYVERLEKPRPEH--LGYAVGLVEGIAVHL 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            R+D ++       +L R     + L R++V ++LY+D + D   +  AVE A++     
Sbjct: 59  DRLDELIASYAEGWTLDRMPAVDRNLARIAVYELLYVDEIDDAVAISEAVELARQM-STD 117

Query: 119 HFAKLVNSILRRVSRE 134
              + +N IL R++  
Sbjct: 118 DSPRFLNGILGRIAEY 133


>gi|225869187|ref|YP_002745135.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. zooepidemicus]
 gi|259514901|sp|C0MED0|NUSB_STRS7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225702463|emb|CAX00364.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus equi subsp. zooepidemicus]
          Length = 150

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 14/133 (10%)

Query: 1   MKSGMN-----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRA 51
           M           R  +   L  +      L  L      D    +   +        +  
Sbjct: 1   MTKRFQHSRRDLRERAFQALFTMEMGGDFL--LASQFAYDYDKEVADDKQPSELPVFLLN 58

Query: 52  IVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAV 108
           +VN  +     +D V+   L    S+ R     + +LR+ + ++ L+ +  D   ++  +
Sbjct: 59  LVNGVMDHKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEII 118

Query: 109 EQAKRDKENRHFA 121
           E AK+  ++    
Sbjct: 119 EIAKKYSDDTSAK 131


>gi|290474696|ref|YP_003467576.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004]
 gi|289174009|emb|CBJ80796.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004]
          Length = 138

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +      +     + D+E+   + + ++  D    R ++        ++DA++ 
Sbjct: 11  ECAVQAIYSWQLSK---NDIADVEFQFLSEQDVTGVDITYFRELLTGVAVNAAKLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LRV++ ++ +  DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|220702382|pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702384|pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702386|pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex.
 gi|220702388|pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10
           Transcription Antitermination Complex
          Length = 141

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R ++         +D ++ 
Sbjct: 13  ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 69

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 70  PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 128

Query: 128 LRR 130
           L +
Sbjct: 129 LDK 131


>gi|15807061|ref|NP_295790.1| N-utilization substance protein B [Deinococcus radiodurans R1]
 gi|22095974|sp|Q9RSQ7|NUSB_DEIRA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|6459861|gb|AAF11617.1|AE002043_2 N-utilization substance protein B [Deinococcus radiodurans R1]
          Length = 192

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTL 57
           +   AR     +L    R  + L  +     G     D  F  L          +V    
Sbjct: 14  TRRAAREFVFRVLFEADRGDVPLQAVFTRAEGVMREGDDTFPQLGPDALHFAEELVTGLE 73

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
           R    ID VL   +   +  +   +   +LR++  +++Y       V++ AV  A++   
Sbjct: 74  RHREAIDDVLHRTIRGWTFDQMAQTDLNVLRLATYELMYTPEPHPPVIESAVRIARKFGG 133

Query: 117 NRH 119
           +  
Sbjct: 134 DDS 136


>gi|15800145|ref|NP_286157.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 EDL933]
 gi|15829723|ref|NP_308496.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128401|ref|NP_414950.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|24111794|ref|NP_706304.1| transcription antitermination protein NusB [Shigella flexneri 2a
           str. 301]
 gi|26246422|ref|NP_752461.1| transcription antitermination protein NusB [Escherichia coli
           CFT073]
 gi|30061911|ref|NP_836082.1| transcription antitermination protein NusB [Shigella flexneri 2a
           str. 2457T]
 gi|74310985|ref|YP_309404.1| transcription antitermination protein NusB [Shigella sonnei Ss046]
 gi|82542904|ref|YP_406851.1| transcription antitermination protein NusB [Shigella boydii Sb227]
 gi|82775679|ref|YP_402026.1| transcription antitermination protein NusB [Shigella dysenteriae
           Sd197]
 gi|89107286|ref|AP_001066.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. W3110]
 gi|91209485|ref|YP_539471.1| transcription antitermination protein NusB [Escherichia coli UTI89]
 gi|110640677|ref|YP_668405.1| transcription antitermination protein NusB [Escherichia coli 536]
 gi|110804438|ref|YP_687958.1| transcription antitermination protein NusB [Shigella flexneri 5
           str. 8401]
 gi|157154883|ref|YP_001461598.1| transcription antitermination protein NusB [Escherichia coli
           E24377A]
 gi|157159937|ref|YP_001457255.1| transcription antitermination protein NusB [Escherichia coli HS]
 gi|170021212|ref|YP_001726166.1| transcription antitermination protein NusB [Escherichia coli ATCC
           8739]
 gi|170080002|ref|YP_001729322.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681155|ref|YP_001742553.1| transcription antitermination protein NusB [Escherichia coli
           SMS-3-5]
 gi|170767720|ref|ZP_02902173.1| transcription termination/antitermination factor NusB [Escherichia
           albertii TW07627]
 gi|187730987|ref|YP_001879125.1| transcription antitermination protein NusB [Shigella boydii CDC
           3083-94]
 gi|187776230|ref|ZP_02801288.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4196]
 gi|188024918|ref|ZP_02774897.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4113]
 gi|188493154|ref|ZP_03000424.1| transcription termination/antitermination factor NusB [Escherichia
           coli 53638]
 gi|189010625|ref|ZP_02808286.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4076]
 gi|189402368|ref|ZP_02781962.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4401]
 gi|189403130|ref|ZP_02793371.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4486]
 gi|189404015|ref|ZP_02786626.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4501]
 gi|189404842|ref|ZP_02811267.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC869]
 gi|189405926|ref|ZP_02825303.2| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC508]
 gi|191166701|ref|ZP_03028528.1| transcription termination/antitermination factor NusB [Escherichia
           coli B7A]
 gi|191173527|ref|ZP_03035054.1| transcription termination/antitermination factor NusB [Escherichia
           coli F11]
 gi|193065231|ref|ZP_03046304.1| transcription termination/antitermination factor NusB [Escherichia
           coli E22]
 gi|193068719|ref|ZP_03049680.1| transcription termination/antitermination factor NusB [Escherichia
           coli E110019]
 gi|194428830|ref|ZP_03061365.1| transcription termination/antitermination factor NusB [Escherichia
           coli B171]
 gi|194432551|ref|ZP_03064837.1| transcription termination/antitermination factor NusB [Shigella
           dysenteriae 1012]
 gi|194438929|ref|ZP_03071014.1| transcription termination/antitermination factor NusB [Escherichia
           coli 101-1]
 gi|195938519|ref|ZP_03083901.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809341|ref|ZP_03251678.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4206]
 gi|208815911|ref|ZP_03257090.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822969|ref|ZP_03263287.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4042]
 gi|209396859|ref|YP_002269060.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4115]
 gi|209917629|ref|YP_002291713.1| transcription antitermination protein NusB [Escherichia coli SE11]
 gi|215485497|ref|YP_002327928.1| transcription antitermination protein NusB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217325689|ref|ZP_03441773.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. TW14588]
 gi|218552979|ref|YP_002385892.1| transcription antitermination protein NusB [Escherichia coli IAI1]
 gi|218557325|ref|YP_002390238.1| transcription antitermination protein NusB [Escherichia coli S88]
 gi|218688279|ref|YP_002396491.1| transcription antitermination protein NusB [Escherichia coli ED1a]
 gi|218693876|ref|YP_002401543.1| transcription antitermination protein NusB [Escherichia coli 55989]
 gi|218698675|ref|YP_002406304.1| transcription antitermination protein NusB [Escherichia coli IAI39]
 gi|218703698|ref|YP_002411217.1| transcription antitermination protein NusB [Escherichia coli
           UMN026]
 gi|227884576|ref|ZP_04002381.1| N utilization substance B [Escherichia coli 83972]
 gi|237707590|ref|ZP_04538071.1| transcription termination [Escherichia sp. 3_2_53FAA]
 gi|238899704|ref|YP_002925500.1| transcription antitermination protein [Escherichia coli BW2952]
 gi|253774599|ref|YP_003037430.1| transcription antitermination protein NusB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160482|ref|YP_003043590.1| transcription antitermination protein NusB [Escherichia coli B str.
           REL606]
 gi|254791599|ref|YP_003076436.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020383|ref|ZP_05434248.1| transcription antitermination protein NusB [Shigella sp. D9]
 gi|256023967|ref|ZP_05437832.1| transcription antitermination protein NusB [Escherichia sp.
           4_1_40B]
 gi|260842614|ref|YP_003220392.1| transcription antitermination protein NusB [Escherichia coli
           O103:H2 str. 12009]
 gi|260853636|ref|YP_003227527.1| transcription antitermination protein NusB [Escherichia coli
           O26:H11 str. 11368]
 gi|260866574|ref|YP_003232976.1| transcription antitermination protein NusB [Escherichia coli
           O111:H- str. 11128]
 gi|261223895|ref|ZP_05938176.1| transcription antitermination protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256391|ref|ZP_05948924.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281322|ref|YP_003498140.1| N utilization substance protein B-like protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403535|ref|ZP_06647626.1| N utilization substance protein B [Escherichia coli FVEC1412]
 gi|293408562|ref|ZP_06652401.1| transcription antitermination factor NusB [Escherichia coli B354]
 gi|293413670|ref|ZP_06656319.1| transcription antitermination factor NusB [Escherichia coli B185]
 gi|293418483|ref|ZP_06660918.1| transcription antitermination factor NusB [Escherichia coli B088]
 gi|297517701|ref|ZP_06936087.1| transcription antitermination protein NusB [Escherichia coli OP50]
 gi|298379147|ref|ZP_06989028.1| N utilization substance protein B [Escherichia coli FVEC1302]
 gi|300818260|ref|ZP_07098471.1| transcription antitermination factor NusB [Escherichia coli MS
           107-1]
 gi|300820345|ref|ZP_07100497.1| transcription antitermination factor NusB [Escherichia coli MS
           119-7]
 gi|300900482|ref|ZP_07118649.1| transcription antitermination factor NusB [Escherichia coli MS
           198-1]
 gi|300903319|ref|ZP_07121247.1| transcription antitermination factor NusB [Escherichia coli MS
           84-1]
 gi|300918204|ref|ZP_07134811.1| transcription antitermination factor NusB [Escherichia coli MS
           115-1]
 gi|300924136|ref|ZP_07140128.1| transcription antitermination factor NusB [Escherichia coli MS
           182-1]
 gi|300930289|ref|ZP_07145702.1| transcription antitermination factor NusB [Escherichia coli MS
           187-1]
 gi|300937025|ref|ZP_07151891.1| transcription antitermination factor NusB [Escherichia coli MS
           21-1]
 gi|300947933|ref|ZP_07162081.1| transcription antitermination factor NusB [Escherichia coli MS
           116-1]
 gi|300957981|ref|ZP_07170146.1| transcription antitermination factor NusB [Escherichia coli MS
           175-1]
 gi|300988032|ref|ZP_07178512.1| transcription antitermination factor NusB [Escherichia coli MS
           45-1]
 gi|300997397|ref|ZP_07181737.1| transcription antitermination factor NusB [Escherichia coli MS
           200-1]
 gi|301022595|ref|ZP_07186467.1| transcription antitermination factor NusB [Escherichia coli MS
           69-1]
 gi|301025697|ref|ZP_07189213.1| transcription antitermination factor NusB [Escherichia coli MS
           196-1]
 gi|301049616|ref|ZP_07196567.1| transcription antitermination factor NusB [Escherichia coli MS
           185-1]
 gi|301301564|ref|ZP_07207699.1| transcription antitermination factor NusB [Escherichia coli MS
           124-1]
 gi|301647338|ref|ZP_07247150.1| transcription antitermination factor NusB [Escherichia coli MS
           146-1]
 gi|306813118|ref|ZP_07447311.1| transcription antitermination protein NusB [Escherichia coli NC101]
 gi|307137059|ref|ZP_07496415.1| transcription antitermination protein NusB [Escherichia coli H736]
 gi|307312209|ref|ZP_07591845.1| NusB antitermination factor [Escherichia coli W]
 gi|309787003|ref|ZP_07681615.1| transcription antitermination factor NusB [Shigella dysenteriae
           1617]
 gi|309794859|ref|ZP_07689280.1| transcription antitermination factor NusB [Escherichia coli MS
           145-7]
 gi|312964562|ref|ZP_07778818.1| transcription antitermination factor NusB [Escherichia coli
           2362-75]
 gi|312970511|ref|ZP_07784692.1| transcription antitermination factor NusB [Escherichia coli
           1827-70]
 gi|331640933|ref|ZP_08342068.1| transcription antitermination factor NusB [Escherichia coli H736]
 gi|331645589|ref|ZP_08346693.1| transcription antitermination factor NusB [Escherichia coli M605]
 gi|331651350|ref|ZP_08352375.1| transcription antitermination factor NusB [Escherichia coli M718]
 gi|331656470|ref|ZP_08357432.1| transcription antitermination factor NusB [Escherichia coli TA206]
 gi|331661793|ref|ZP_08362716.1| transcription antitermination factor NusB [Escherichia coli TA143]
 gi|331666765|ref|ZP_08367639.1| transcription antitermination factor NusB [Escherichia coli TA271]
 gi|331671961|ref|ZP_08372757.1| transcription antitermination factor NusB [Escherichia coli TA280]
 gi|331676083|ref|ZP_08376795.1| transcription antitermination factor NusB [Escherichia coli H591]
 gi|331681809|ref|ZP_08382442.1| transcription antitermination factor NusB [Escherichia coli H299]
 gi|332281562|ref|ZP_08393975.1| transcription termination/antitermination factor NusB [Shigella sp.
           D9]
 gi|67469828|sp|P0A780|NUSB_ECOLI RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469829|sp|P0A781|NUSB_ECOL6 RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469832|sp|P0A782|NUSB_ECO57 RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|67469833|sp|P0A783|NUSB_SHIFL RecName: Full=N utilization substance protein B; Short=Protein nusB
 gi|119390769|sp|Q0TKM5|NUSB_ECOL5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390770|sp|Q1RFC4|NUSB_ECOUT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390822|sp|Q325I5|NUSB_SHIBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390823|sp|Q32JH0|NUSB_SHIDS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390824|sp|Q3Z4Z3|NUSB_SHISS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122957627|sp|Q0T7H3|NUSB_SHIF8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918806|sp|A7ZIG9|NUSB_ECO24 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166918807|sp|A7ZX68|NUSB_ECOHS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035889|sp|B1J033|NUSB_ECOLC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738899|sp|B7MD74|NUSB_ECO45 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738900|sp|B7NJ81|NUSB_ECO7I RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738901|sp|B7M3Q5|NUSB_ECO8A RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738902|sp|B7N8W8|NUSB_ECOLU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226738903|sp|B1LJG6|NUSB_ECOSM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620059|sp|B1XF04|NUSB_ECODH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055351|sp|B5Z3S0|NUSB_ECO5E RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238055352|sp|B6HZL7|NUSB_ECOSE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689513|sp|B2U4L9|NUSB_SHIB3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772637|sp|B7UJN9|NUSB_ECO27 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772638|sp|B7L650|NUSB_ECO55 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772639|sp|B7MQD1|NUSB_ECO81 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|259514826|sp|C4ZTH3|NUSB_ECOBW RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|9257110|pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb
 gi|12513271|gb|AAG54765.1|AE005221_2 transcription termination; L factor [Escherichia coli O157:H7 str.
           EDL933]
 gi|26106820|gb|AAN79005.1|AE016756_188 N utilization substance protein B [Escherichia coli CFT073]
 gi|146976|gb|AAA24228.1| nusB [Escherichia coli]
 gi|581148|emb|CAA45737.1| nusB (ssyB) [Escherichia coli K-12]
 gi|581149|emb|CAA25289.1| unnamed protein product [Escherichia coli]
 gi|1773100|gb|AAB40172.1| N utilization substance protein B [Escherichia coli]
 gi|1786618|gb|AAC73519.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|13359926|dbj|BAB33892.1| transcription termination factor NusB [Escherichia coli O157:H7
           str. Sakai]
 gi|15027052|emb|CAC44764.1| N utilisation substance protein B [Expression vector
           pNCO113-nusB/nusE]
 gi|24050582|gb|AAN42011.1| transcription termination factor NusB [Shigella flexneri 2a str.
           301]
 gi|30040155|gb|AAP15888.1| transcription termination factor NusB [Shigella flexneri 2a str.
           2457T]
 gi|73854462|gb|AAZ87169.1| transcription termination; L factor [Shigella sonnei Ss046]
 gi|81239827|gb|ABB60537.1| NusB [Shigella dysenteriae Sd197]
 gi|81244315|gb|ABB65023.1| NusB [Shigella boydii Sb227]
 gi|85674556|dbj|BAE76196.1| transcription antitermination protein [Escherichia coli str. K12
           substr. W3110]
 gi|91071059|gb|ABE05940.1| FJECB transcription termination; L factor [Escherichia coli UTI89]
 gi|110342269|gb|ABG68506.1| N utilization substance protein B [Escherichia coli 536]
 gi|110613986|gb|ABF02653.1| transcription termination L factor [Shigella flexneri 5 str. 8401]
 gi|157065617|gb|ABV04872.1| transcription termination/antitermination factor NusB [Escherichia
           coli HS]
 gi|157076913|gb|ABV16621.1| transcription termination/antitermination factor NusB [Escherichia
           coli E24377A]
 gi|169756140|gb|ACA78839.1| NusB antitermination factor [Escherichia coli ATCC 8739]
 gi|169887837|gb|ACB01544.1| transcription antitermination protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123208|gb|EDS92139.1| transcription termination/antitermination factor NusB [Escherichia
           albertii TW07627]
 gi|170518873|gb|ACB17051.1| transcription termination/antitermination factor NusB [Escherichia
           coli SMS-3-5]
 gi|187427979|gb|ACD07253.1| transcription termination/antitermination factor NusB [Shigella
           boydii CDC 3083-94]
 gi|187768302|gb|EDU32146.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015850|gb|EDU53972.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4113]
 gi|188488353|gb|EDU63456.1| transcription termination/antitermination factor NusB [Escherichia
           coli 53638]
 gi|188999358|gb|EDU68344.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4076]
 gi|189356022|gb|EDU74441.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362518|gb|EDU80937.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4486]
 gi|189368081|gb|EDU86497.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4501]
 gi|189373730|gb|EDU92146.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC869]
 gi|189377377|gb|EDU95793.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC508]
 gi|190903212|gb|EDV62934.1| transcription termination/antitermination factor NusB [Escherichia
           coli B7A]
 gi|190906236|gb|EDV65848.1| transcription termination/antitermination factor NusB [Escherichia
           coli F11]
 gi|192927205|gb|EDV81826.1| transcription termination/antitermination factor NusB [Escherichia
           coli E22]
 gi|192958082|gb|EDV88524.1| transcription termination/antitermination factor NusB [Escherichia
           coli E110019]
 gi|194413133|gb|EDX29420.1| transcription termination/antitermination factor NusB [Escherichia
           coli B171]
 gi|194419112|gb|EDX35195.1| transcription termination/antitermination factor NusB [Shigella
           dysenteriae 1012]
 gi|194422223|gb|EDX38225.1| transcription termination/antitermination factor NusB [Escherichia
           coli 101-1]
 gi|208729142|gb|EDZ78743.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4206]
 gi|208732559|gb|EDZ81247.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737162|gb|EDZ84846.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4042]
 gi|209158259|gb|ACI35692.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. EC4115]
 gi|209744064|gb|ACI70339.1| transcription termination factor NusB [Escherichia coli]
 gi|209744066|gb|ACI70340.1| transcription termination factor NusB [Escherichia coli]
 gi|209744068|gb|ACI70341.1| transcription termination factor NusB [Escherichia coli]
 gi|209744070|gb|ACI70342.1| transcription termination factor NusB [Escherichia coli]
 gi|209744072|gb|ACI70343.1| transcription termination factor NusB [Escherichia coli]
 gi|209910888|dbj|BAG75962.1| N utilization substance protein B [Escherichia coli SE11]
 gi|215263569|emb|CAS07899.1| transcription antitermination protein NusB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321910|gb|EEC30334.1| transcription termination/antitermination factor NusB [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350608|emb|CAU96300.1| transcription antitermination protein [Escherichia coli 55989]
 gi|218359747|emb|CAQ97288.1| transcription antitermination protein [Escherichia coli IAI1]
 gi|218364094|emb|CAR01759.1| transcription antitermination protein [Escherichia coli S88]
 gi|218368661|emb|CAR16400.1| transcription antitermination protein [Escherichia coli IAI39]
 gi|218425843|emb|CAR06649.1| transcription antitermination protein [Escherichia coli ED1a]
 gi|218430795|emb|CAR11669.1| transcription antitermination protein [Escherichia coli UMN026]
 gi|222032211|emb|CAP74950.1| N utilization substance protein B [Escherichia coli LF82]
 gi|226898800|gb|EEH85059.1| transcription termination [Escherichia sp. 3_2_53FAA]
 gi|227838662|gb|EEJ49128.1| N utilization substance B [Escherichia coli 83972]
 gi|238863676|gb|ACR65674.1| transcription antitermination protein [Escherichia coli BW2952]
 gi|242376194|emb|CAQ30885.1| transcription antitermination protein NusB, subunit of NusB-NusE
           complex [Escherichia coli BL21(DE3)]
 gi|253325643|gb|ACT30245.1| NusB antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972383|gb|ACT38054.1| transcription antitermination protein NusB [Escherichia coli B str.
           REL606]
 gi|253976593|gb|ACT42263.1| transcription antitermination protein NusB [Escherichia coli
           BL21(DE3)]
 gi|254590999|gb|ACT70360.1| transcription antitermination protein [Escherichia coli O157:H7
           str. TW14359]
 gi|257752285|dbj|BAI23787.1| transcription antitermination protein NusB [Escherichia coli
           O26:H11 str. 11368]
 gi|257757761|dbj|BAI29258.1| transcription antitermination protein NusB [Escherichia coli
           O103:H2 str. 12009]
 gi|257762930|dbj|BAI34425.1| transcription antitermination protein NusB [Escherichia coli
           O111:H- str. 11128]
 gi|260450397|gb|ACX40819.1| NusB antitermination factor [Escherichia coli DH1]
 gi|281177586|dbj|BAI53916.1| N utilization substance protein B [Escherichia coli SE15]
 gi|281599748|gb|ADA72732.1| N utilization substance protein B [Shigella flexneri 2002017]
 gi|284920225|emb|CBG33284.1| N utilization substance protein B [Escherichia coli 042]
 gi|290761195|gb|ADD55156.1| N utilization substance protein B-like protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|291325011|gb|EFE64426.1| transcription antitermination factor NusB [Escherichia coli B088]
 gi|291429388|gb|EFF02408.1| N utilization substance protein B [Escherichia coli FVEC1412]
 gi|291433728|gb|EFF06701.1| transcription antitermination factor NusB [Escherichia coli B185]
 gi|291471740|gb|EFF14223.1| transcription antitermination factor NusB [Escherichia coli B354]
 gi|294491145|gb|ADE89901.1| transcription termination/antitermination factor NusB [Escherichia
           coli IHE3034]
 gi|298280260|gb|EFI21764.1| N utilization substance protein B [Escherichia coli FVEC1302]
 gi|299880009|gb|EFI88220.1| transcription antitermination factor NusB [Escherichia coli MS
           196-1]
 gi|300298609|gb|EFJ54994.1| transcription antitermination factor NusB [Escherichia coli MS
           185-1]
 gi|300304216|gb|EFJ58736.1| transcription antitermination factor NusB [Escherichia coli MS
           200-1]
 gi|300315317|gb|EFJ65101.1| transcription antitermination factor NusB [Escherichia coli MS
           175-1]
 gi|300355963|gb|EFJ71833.1| transcription antitermination factor NusB [Escherichia coli MS
           198-1]
 gi|300397476|gb|EFJ81014.1| transcription antitermination factor NusB [Escherichia coli MS
           69-1]
 gi|300404614|gb|EFJ88152.1| transcription antitermination factor NusB [Escherichia coli MS
           84-1]
 gi|300407584|gb|EFJ91122.1| transcription antitermination factor NusB [Escherichia coli MS
           45-1]
 gi|300414655|gb|EFJ97965.1| transcription antitermination factor NusB [Escherichia coli MS
           115-1]
 gi|300419589|gb|EFK02900.1| transcription antitermination factor NusB [Escherichia coli MS
           182-1]
 gi|300452533|gb|EFK16153.1| transcription antitermination factor NusB [Escherichia coli MS
           116-1]
 gi|300457856|gb|EFK21349.1| transcription antitermination factor NusB [Escherichia coli MS
           21-1]
 gi|300461861|gb|EFK25354.1| transcription antitermination factor NusB [Escherichia coli MS
           187-1]
 gi|300527130|gb|EFK48199.1| transcription antitermination factor NusB [Escherichia coli MS
           119-7]
 gi|300529151|gb|EFK50213.1| transcription antitermination factor NusB [Escherichia coli MS
           107-1]
 gi|300843061|gb|EFK70821.1| transcription antitermination factor NusB [Escherichia coli MS
           124-1]
 gi|301074483|gb|EFK89289.1| transcription antitermination factor NusB [Escherichia coli MS
           146-1]
 gi|305853881|gb|EFM54320.1| transcription antitermination protein NusB [Escherichia coli NC101]
 gi|306907711|gb|EFN38213.1| NusB antitermination factor [Escherichia coli W]
 gi|307552321|gb|ADN45096.1| N utilization substance protein B [Escherichia coli ABU 83972]
 gi|307628115|gb|ADN72419.1| transcription antitermination protein NusB [Escherichia coli UM146]
 gi|308121512|gb|EFO58774.1| transcription antitermination factor NusB [Escherichia coli MS
           145-7]
 gi|308924581|gb|EFP70076.1| transcription antitermination factor NusB [Shigella dysenteriae
           1617]
 gi|309700678|emb|CBI99974.1| N utilization substance protein B [Escherichia coli ETEC H10407]
 gi|310337160|gb|EFQ02298.1| transcription antitermination factor NusB [Escherichia coli
           1827-70]
 gi|312290796|gb|EFR18673.1| transcription antitermination factor NusB [Escherichia coli
           2362-75]
 gi|312944993|gb|ADR25820.1| transcription antitermination protein NusB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313646967|gb|EFS11424.1| transcription antitermination factor NusB [Shigella flexneri 2a
           str. 2457T]
 gi|315059693|gb|ADT74020.1| transcription antitermination protein [Escherichia coli W]
 gi|315135098|dbj|BAJ42257.1| N utilization substance protein B-like protein [Escherichia coli
           DH1]
 gi|315256241|gb|EFU36209.1| transcription antitermination factor NusB [Escherichia coli MS
           85-1]
 gi|315289869|gb|EFU49259.1| transcription antitermination factor NusB [Escherichia coli MS
           110-3]
 gi|315294205|gb|EFU53556.1| transcription antitermination factor NusB [Escherichia coli MS
           153-1]
 gi|315299582|gb|EFU58830.1| transcription antitermination factor NusB [Escherichia coli MS
           16-3]
 gi|315616644|gb|EFU97261.1| transcription antitermination factor NusB [Escherichia coli 3431]
 gi|320173766|gb|EFW48949.1| Transcription termination protein NusB [Shigella dysenteriae CDC
           74-1112]
 gi|320181602|gb|EFW56517.1| Transcription termination protein NusB [Shigella boydii ATCC 9905]
 gi|320186045|gb|EFW60790.1| Transcription termination protein NusB [Shigella flexneri CDC
           796-83]
 gi|320192829|gb|EFW67469.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. EC1212]
 gi|320197146|gb|EFW71763.1| Transcription termination protein NusB [Escherichia coli WV_060327]
 gi|320201657|gb|EFW76233.1| Transcription termination protein NusB [Escherichia coli EC4100B]
 gi|320638408|gb|EFX08122.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. G5101]
 gi|320643788|gb|EFX12911.1| transcription antitermination protein NusB [Escherichia coli
           O157:H- str. 493-89]
 gi|320649139|gb|EFX17717.1| transcription antitermination protein NusB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656032|gb|EFX23948.1| transcription antitermination protein NusB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661182|gb|EFX28613.1| transcription antitermination protein NusB [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665158|gb|EFX32251.1| transcription antitermination protein NusB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323152116|gb|EFZ38409.1| transcription antitermination factor NusB [Escherichia coli
           EPECa14]
 gi|323160477|gb|EFZ46425.1| transcription antitermination factor NusB [Escherichia coli
           E128010]
 gi|323164207|gb|EFZ50014.1| transcription antitermination factor NusB [Shigella sonnei 53G]
 gi|323170498|gb|EFZ56148.1| transcription antitermination factor NusB [Escherichia coli LT-68]
 gi|323178321|gb|EFZ63899.1| transcription antitermination factor NusB [Escherichia coli 1180]
 gi|323184758|gb|EFZ70129.1| transcription antitermination factor NusB [Escherichia coli 1357]
 gi|323191334|gb|EFZ76597.1| transcription antitermination factor NusB [Escherichia coli
           RN587/1]
 gi|323379741|gb|ADX52009.1| NusB antitermination factor [Escherichia coli KO11]
 gi|323938601|gb|EGB34850.1| transcription antitermination protein NusB [Escherichia coli E1520]
 gi|323943222|gb|EGB39378.1| transcription antitermination protein NusB [Escherichia coli E482]
 gi|323945317|gb|EGB41373.1| transcription antitermination protein NusB [Escherichia coli H120]
 gi|323952972|gb|EGB48840.1| transcription antitermination protein NusB [Escherichia coli H252]
 gi|323958609|gb|EGB54312.1| transcription antitermination protein NusB [Escherichia coli H263]
 gi|323963402|gb|EGB58964.1| transcription antitermination protein NusB [Escherichia coli H489]
 gi|323965098|gb|EGB60557.1| transcription antitermination protein NusB [Escherichia coli M863]
 gi|323972266|gb|EGB67476.1| transcription antitermination protein NusB [Escherichia coli TA007]
 gi|323976103|gb|EGB71196.1| transcription antitermination protein NusB [Escherichia coli
           TW10509]
 gi|324010093|gb|EGB79312.1| transcription antitermination factor NusB [Escherichia coli MS
           57-2]
 gi|324010676|gb|EGB79895.1| transcription antitermination factor NusB [Escherichia coli MS
           60-1]
 gi|324016678|gb|EGB85897.1| transcription antitermination factor NusB [Escherichia coli MS
           117-3]
 gi|324116900|gb|EGC10813.1| transcription antitermination protein NusB [Escherichia coli E1167]
 gi|326341177|gb|EGD64969.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. 1044]
 gi|326346048|gb|EGD69787.1| Transcription termination protein NusB [Escherichia coli O157:H7
           str. 1125]
 gi|327254737|gb|EGE66353.1| transcription antitermination factor NusB [Escherichia coli
           STEC_7v]
 gi|330910210|gb|EGH38720.1| transcription termination protein NusB [Escherichia coli AA86]
 gi|331037731|gb|EGI09951.1| transcription antitermination factor NusB [Escherichia coli H736]
 gi|331045751|gb|EGI17877.1| transcription antitermination factor NusB [Escherichia coli M605]
 gi|331051091|gb|EGI23143.1| transcription antitermination factor NusB [Escherichia coli M718]
 gi|331054718|gb|EGI26727.1| transcription antitermination factor NusB [Escherichia coli TA206]
 gi|331060215|gb|EGI32179.1| transcription antitermination factor NusB [Escherichia coli TA143]
 gi|331065989|gb|EGI37873.1| transcription antitermination factor NusB [Escherichia coli TA271]
 gi|331070950|gb|EGI42309.1| transcription antitermination factor NusB [Escherichia coli TA280]
 gi|331076141|gb|EGI47423.1| transcription antitermination factor NusB [Escherichia coli H591]
 gi|331081011|gb|EGI52176.1| transcription antitermination factor NusB [Escherichia coli H299]
 gi|332086022|gb|EGI91186.1| transcription antitermination factor NusB [Shigella dysenteriae
           155-74]
 gi|332094566|gb|EGI99612.1| transcription antitermination factor NusB [Shigella boydii 5216-82]
 gi|332098578|gb|EGJ03544.1| transcription antitermination factor NusB [Shigella boydii 3594-74]
 gi|332103914|gb|EGJ07260.1| transcription termination/antitermination factor NusB [Shigella sp.
           D9]
 gi|332341779|gb|AEE55113.1| transcription antitermination factor protein NusB [Escherichia coli
           UMNK88]
 gi|332760696|gb|EGJ90984.1| transcription antitermination factor NusB [Shigella flexneri
           4343-70]
 gi|332761743|gb|EGJ92022.1| transcription antitermination factor NusB [Shigella flexneri
           2747-71]
 gi|332764293|gb|EGJ94529.1| transcription antitermination factor NusB [Shigella flexneri K-671]
 gi|332768521|gb|EGJ98704.1| transcription antitermination factor NusB [Shigella flexneri
           2930-71]
 gi|333007978|gb|EGK27454.1| transcription antitermination factor NusB [Shigella flexneri K-218]
 gi|333008611|gb|EGK28079.1| transcription antitermination factor NusB [Shigella flexneri VA-6]
 gi|333010858|gb|EGK30284.1| transcription antitermination factor NusB [Shigella flexneri K-272]
 gi|333021357|gb|EGK40610.1| transcription antitermination factor NusB [Shigella flexneri K-227]
 gi|333022014|gb|EGK41259.1| transcription antitermination factor NusB [Shigella flexneri K-304]
 gi|1096319|prf||2111328A NusB protein
          Length = 139

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R ++         +D ++ 
Sbjct: 11  ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|79332684|ref|NP_001032161.1| unknown protein [Arabidopsis thaliana]
 gi|332010790|gb|AED98173.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 374

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 22/145 (15%)

Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDDIVKSACFQRKLLLQGISFVK 356
           +D VLVDA C+  G+I+       W                      Q  LL  G   +K
Sbjct: 232 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 291

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
             G +V+S CSL    +E+VV + L  +              K        +P   +R  
Sbjct: 292 EAGTLVYSTCSLTHAQNEDVVDQFLSEN---FSAELQEIEMAKDWPCRSGRTP-KTLRFD 347

Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441
           P              G F   +R+L
Sbjct: 348 PSTSATS--------GLFVAKIRKL 364


>gi|300715571|ref|YP_003740374.1| N utilization substance protein B [Erwinia billingiae Eb661]
 gi|299061407|emb|CAX58517.1| N utilization substance protein B [Erwinia billingiae Eb661]
          Length = 139

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +  ++ +      +   + +   D    R ++         +D ++ 
Sbjct: 11  ECAVQALYSWQLSKNDISDVEYQFLAE---QDVKDVDISYFRELLVGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+S+ ++    DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRISLFELSKRADVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + +      
Sbjct: 127 LDKAAPYIRPN 137


>gi|296125572|ref|YP_003632824.1| NusB antitermination factor [Brachyspira murdochii DSM 12563]
 gi|296017388|gb|ADG70625.1| NusB antitermination factor [Brachyspira murdochii DSM 12563]
          Length = 154

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 3   SGMNARLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           +   AR+ +   L    +  ++IS+  +LD +Y       +        R +V  T++ L
Sbjct: 21  ARRQARIYAVMSLYSYEINERKISINNILDFDYDKKIPENI----FAFTRNLVEGTIKNL 76

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            RID++++    +  + R +Y  + ++R+S+  +++L D+    V+D AVE AK    ++
Sbjct: 77  ERIDSLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEIAK-IFSDK 135

Query: 119 HFAKLVNSILR 129
              K VN IL 
Sbjct: 136 DSYKFVNGILD 146


>gi|158256914|dbj|BAF84430.1| unnamed protein product [Homo sapiens]
          Length = 384

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 363

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   +RRL 
Sbjct: 364 VVPNLMANFGP-------MYFCKMRRLT 384


>gi|195977499|ref|YP_002122743.1| transcription antitermination protein NusB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974204|gb|ACG61730.1| N utilization substance protein B-like NusB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 139

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTLRFLPRI 63
           R  +   L  +      L  L      D    +   +        +  +VN  +     +
Sbjct: 2   RERAFQALFTMEMGGDFL--LASQFAYDYDKEVADDKQPSELPVFLLNLVNGVMDHKAEL 59

Query: 64  DAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHF 120
           D V+   L    S+ R     + +LR+ + ++ L+ +  D   ++  +E AK+  ++   
Sbjct: 60  DEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYSDDTSA 119

Query: 121 A 121
            
Sbjct: 120 K 120


>gi|284048210|ref|YP_003398549.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731]
 gi|283952431|gb|ADB47234.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731]
          Length = 139

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 4/123 (3%)

Query: 3   SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           S  +AR ++   L  +      S    +     +   +   ++D      +V        
Sbjct: 2   SRRDARTIAMRSLFALEFSPEQSPEETVRTMAEEEDIQDTRKKDLAYALDLVKGVRENQE 61

Query: 62  RIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENR 118
            +D  L+ +    +L R     + LLR++  ++      V     ++ AVE AK    + 
Sbjct: 62  ALDGELNGLDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVYGGDD 121

Query: 119 HFA 121
             A
Sbjct: 122 SPA 124


>gi|220672735|emb|CAX12676.1| novel protein similar to H.sapiens NSUN4, NOL1/NOP2/Sun domain
           family, member 4 (NSUN4, zgc:101708) [Danio rerio]
          Length = 393

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 35/284 (12%)

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLF 237
             D            +      L      I               +++ DA++ +PV   
Sbjct: 119 HNDSTDVESAPLQTSITPDIKCLVFPRGDISRFKPARPDSSGILGYYLLDAASVLPVLAL 178

Query: 238 GTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY------ 289
                 +VLDLCAAPGGKT       S   + A D+S  R  +LR  L            
Sbjct: 179 DVRPGQTVLDLCAAPGGKTLALLQAHSVNHLWANDLSVSRTGRLRKILQSYVPKEFLDEE 238

Query: 290 AEDIIEMDAFD--YCPKKLFDAVLVDAPCS---STGTIRRHPDVLWTRDTDDIVKSACFQ 344
              I  +D  +     +K FD VLVD PC+    +  +  +     +R   +  K    Q
Sbjct: 239 NIHITCIDGRELGMREEKSFDRVLVDVPCTTDRHSAVVEENNIFKRSRTK-ERQKLPLLQ 297

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-------ELVPLNSAY 397
            +LL+ GI   + GG++V+S CSL +  +E VVQ+ +  +   +       +L      +
Sbjct: 298 IQLLVAGIQAARQGGLIVYSTCSLSQLQNECVVQQAISVAQEELGITVQVQDLRWFTQRF 357

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +   A  LS  G + + P +      +       +   L+R+
Sbjct: 358 SDTFHFAPQLSV-GEL-VLPHLCANFGPI-------YMCKLQRM 392


>gi|85000949|ref|XP_955193.1| nucleolar protein [Theileria annulata strain Ankara]
 gi|65303339|emb|CAI75717.1| nucleolar protein, putative [Theileria annulata]
          Length = 366

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 120/311 (38%), Gaps = 57/311 (18%)

Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN-----NL 243
           +  K+     P   + L      + +  G      +  DAS++  V              
Sbjct: 56  YYRKVGDCNFPDDRVVLWLRDVEVYNTTGNIPPSCYGLDASSAAVVDSLRLKRLSSAKEA 115

Query: 244 SVLDLCAAPGGKT---------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
            VLD+C APGGK                  +I   + +  +++ K  L+K   + DR+ +
Sbjct: 116 WVLDMCCAPGGKLFATIDAADKIRSDTKWNIIGLDSSIRRIELCKSMLKKELFDRDRIDV 175

Query: 289 YAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIR------RHPDVLW---TRDTDD 336
             + I   +  ++  +   + FD +++D  C+  G++R      R   + W     + + 
Sbjct: 176 NFKFINSQEFSEFNGESMFEKFDRIILDVECTLEGSLRSVIRTLRFWGIKWLENNWNREY 235

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE----EVVQKV--LRSSPIPV-- 388
             K    QR+LL Q I  VKPGG +V+S CSLDK+ +E    +V+++   ++  P+P+  
Sbjct: 236 ASKIIANQRELLTQAIKLVKPGGFIVYSTCSLDKEQNEHLLCDVIKQFQNIKFHPLPIHS 295

Query: 389 ---------ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--------KIDGVSSGMD 431
                    E      A      + +  S E +  +  +           +   ++   D
Sbjct: 296 CSCCSYNSEERQETWPAESCEHILKLKCSDEYFYSVNMNHCNNKNSPSAVRFVPLNGKTD 355

Query: 432 GFFAVALRRLI 442
           G F   L + I
Sbjct: 356 GLFIALLFKTI 366


>gi|227499084|ref|ZP_03929221.1| NusB antitermination factor [Acidaminococcus sp. D21]
 gi|226904533|gb|EEH90451.1| NusB antitermination factor [Acidaminococcus sp. D21]
          Length = 140

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKR--ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           S   AR ++   L  +        L  +      D     L + D+    A+V  T   L
Sbjct: 2   SRREARTLAMKSLFSLDFTTDVSPLDTV-KALLEDEDTPALPKDDENYAAALVTGTREHL 60

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117
             ID+VLD +     + R     + LLR++  ++ +    +A    +  AVE AK    +
Sbjct: 61  EAIDSVLDTLSDEWKVKRMAGVDRNLLRMAAFEMYFSPQKIAPAIAISEAVEIAKIYGGD 120

Query: 118 RHFAKLVNSILRRVSREK 135
                 +N +L  + R  
Sbjct: 121 DS-PHFINGLLGTLVRNH 137


>gi|37527753|ref|NP_931098.1| transcription antitermination protein NusB [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|39931724|sp|Q7N0J0|NUSB_PHOLL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|36787189|emb|CAE16269.1| N utilization substance protein B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 138

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +        S+  +      +   + ++  D    R +++       ++DA++ 
Sbjct: 11  ECAVQAIYSWQLSGNSIADVELQFLSE---QDVTGVDVTYFRELLSGVAVNAAKLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++ Y  DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRIAMFELSYRDDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|117923480|ref|YP_864097.1| NusB antitermination factor [Magnetococcus sp. MC-1]
 gi|117607236|gb|ABK42691.1| NusB antitermination factor [Magnetococcus sp. MC-1]
          Length = 165

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 1   MKSG--MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M+ G    +R ++  +L         +   L     D     +   DQ     +      
Sbjct: 15  MRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLEDPHSEGM---DQDYFSQLTLGVEA 71

Query: 59  FLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
               +D+ +       S+ R       +LR+ + ++L   +V    +++ A+E +KR   
Sbjct: 72  EREVLDSWIGRAGAAWSMDRFSVVDHNILRLGIYELLKQPEVPHRVILNEAIELSKRFGG 131

Query: 117 NRHFAKLVNSILRR 130
               ++ VN ++ +
Sbjct: 132 EES-SRFVNGVMDK 144


>gi|324990231|gb|EGC22169.1| N utilization substance protein B [Streptococcus sanguinis SK353]
 gi|325688019|gb|EGD30038.1| N utilization substance protein B [Streptococcus sanguinis SK72]
          Length = 143

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++    + D+         +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEETDKAAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|228477148|ref|ZP_04061786.1| transcription antitermination factor NusB [Streptococcus salivarius
           SK126]
 gi|312863702|ref|ZP_07723940.1| transcription antitermination factor NusB [Streptococcus
           vestibularis F0396]
 gi|322516050|ref|ZP_08068987.1| transcription antitermination factor NusB [Streptococcus
           vestibularis ATCC 49124]
 gi|228251167|gb|EEK10338.1| transcription antitermination factor NusB [Streptococcus salivarius
           SK126]
 gi|311101238|gb|EFQ59443.1| transcription antitermination factor NusB [Streptococcus
           vestibularis F0396]
 gi|322125465|gb|EFX96811.1| transcription antitermination factor NusB [Streptococcus
           vestibularis ATCC 49124]
          Length = 144

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           S  + R  +   L  +     +L         D      ++ D    + ++V      L 
Sbjct: 8   SRRDLRERAFQTLFALEFGGEALEQAHFAYTYDKPIDEETEVDVPAFLLSLVTGVREELA 67

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D+ ++  L    SL R   + + LLR+ + +I  + +      ++  +E AK+   + 
Sbjct: 68  QLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIEIAKKY-SDE 126

Query: 119 HFAKLVNSILRRV 131
             AK +N +L + 
Sbjct: 127 TSAKFINGVLSQF 139


>gi|154173840|ref|YP_001407739.1| transcription antitermination protein NusB [Campylobacter curvus
           525.92]
 gi|166215674|sp|A7GWZ7|NUSB_CAMC5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112803582|gb|EAU00926.1| transcription antitermination factor NusB [Campylobacter curvus
           525.92]
          Length = 131

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 6/136 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL         +    D    +   R   ++ Q L     +      
Sbjct: 1   MATRHQVRQAVVSLLYAHEM-GSEMNEFKDEFLEEKKIRN-ERKIQAL--ETFDAICLKK 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D +L   L    + R       +LR+ V ++ +       +++ A+E AK       
Sbjct: 57  GELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIINEAIELAKE-LGGDS 115

Query: 120 FAKLVNSILRRVSREK 135
             K +N +L  +  E 
Sbjct: 116 APKFINGVLDALKGEM 131


>gi|71027761|ref|XP_763524.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350477|gb|EAN31241.1| hypothetical protein, conserved [Theileria parva]
          Length = 365

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 51/250 (20%)

Query: 244 SVLDLCAAPGGKTA--------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
            +LD+C APGGK              +   +  LD S RR+E  +  L +     + I  
Sbjct: 116 WILDMCCAPGGKLFATIDSADKINSDTKWNIIGLDSSIRRIELCKAMLRKELFNRDKIDV 175

Query: 296 MDAFDYCPKK----------LFDAVLVDAPCSSTGTIR------RHPDVLWTRDTDDIVK 339
                   +            FD +++DA C+  G++R      R   + W  ++ +   
Sbjct: 176 SFKHINSQEFSEYNGESMLEKFDRIILDAECTLEGSLRSVIRTLRFWGIKWLENSWNREY 235

Query: 340 SACF---QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNS 395
           ++     QR+LL Q I  +KPGG +V+S CSLDK+ +E ++  V+++ P      +P++S
Sbjct: 236 ASKIITNQRELLTQAIKLLKPGGFIVYSTCSLDKEQNEYLLCDVIKNFPNVKFHPLPVHS 295

Query: 396 ------AYWKSIDMAMALSPEGWIRI-------TPDM----------LEKIDGVSSGMDG 432
                  Y +  +   A S +  +R+        P +            +   ++   DG
Sbjct: 296 CLCCSYNYGERHETWPAESCDRTLRLKCSRDYFYPVIAGCDNRYSPSAVRFVPLNGITDG 355

Query: 433 FFAVALRRLI 442
            F   L + I
Sbjct: 356 LFIALLFKTI 365


>gi|120403637|ref|YP_953466.1| transcription antitermination protein NusB [Mycobacterium
           vanbaalenii PYR-1]
 gi|166215702|sp|A1T8G0|NUSB_MYCVP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119956455|gb|ABM13460.1| NusB antitermination factor [Mycobacterium vanbaalenii PYR-1]
          Length = 163

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 10/135 (7%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTLRF 59
              AR  +  LL     + I+   + +     +A       D          +       
Sbjct: 10  RHQARKRAVDLLFEAEARGITAAEVAE---ARNALAEKRTDDIATLNPYTVTVAQGVTAH 66

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ID ++   L   +L R     + +LRV+V ++L+  DV +   VD AVE AK+    
Sbjct: 67  AAHIDDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKQ-LST 125

Query: 118 RHFAKLVNSILRRVS 132
                 VN +L +V 
Sbjct: 126 DDSPGFVNGVLGQVM 140


>gi|297797769|ref|XP_002866769.1| hypothetical protein ARALYDRAFT_496995 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312604|gb|EFH43028.1| hypothetical protein ARALYDRAFT_496995 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDD 336
            L  + +      D      +D VLVDA C+  G+I+       W               
Sbjct: 230 GLTKKQLYTSLDQDDYAYCGYDKVLVDAECTHDGSIKHIQKFEQWGWTTLERRVLDAERT 289

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
               +  Q  LL  G   ++  G +V+S CSL    +E+VV + L  +          + 
Sbjct: 290 DRNLSALQLNLLRNGFRLLREAGTLVYSTCSLTHAQNEDVVDQFLAENSSAELQEIEMAE 349

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445
            W       + +             + D  +S   G F   +R+L   +
Sbjct: 350 DWPCRSGRTSKT------------LRFDHSTSATSGLFVAKIRKLPSNE 386


>gi|206901052|ref|YP_002250763.1| transcription antitermination factor NusB [Dictyoglomus
           thermophilum H-6-12]
 gi|254772635|sp|B5YE05|NUSB_DICT6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206740155|gb|ACI19213.1| transcription antitermination factor NusB [Dictyoglomus
           thermophilum H-6-12]
          Length = 144

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R     LL      +            +  F   S + Q     + +  L++    D+++
Sbjct: 9   REKVLQLLFQKDLGQE----------VEVDFSDFSPQGQAFAYRLYDGALQYKDLADSII 58

Query: 68  DFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
                +  L R     + +LR+++A++  + D+     V+ AVE AK+        + VN
Sbjct: 59  SRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPE-AGRFVN 117

Query: 126 SILRRVSREK 135
            ILR + R  
Sbjct: 118 GILRNIVRNW 127


>gi|270293308|ref|ZP_06199517.1| N utilization substance protein B [Streptococcus sp. M143]
 gi|270278157|gb|EFA24005.1| N utilization substance protein B [Streptococcus sp. M143]
          Length = 146

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 14  SRRELRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLTELVSGVQAKKEE 71

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 72  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 130

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 131 ARFINGLLSQF 141


>gi|266618676|pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
 gi|266618678|pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
 gi|266618680|pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
          Length = 141

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R ++         +D ++ 
Sbjct: 13  ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 69

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK      +  K VN +
Sbjct: 70  PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAENSHKFVNGV 128

Query: 128 LRR 130
           L +
Sbjct: 129 LDK 131


>gi|323705298|ref|ZP_08116873.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535200|gb|EGB24976.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 139

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR     LL      ++    + D    D+      ++D   +       ++ +  
Sbjct: 2   NRTQAREWLVKLLYQYDISKLEPQKIFDKFLEDNDPE--DEKD--YIENTFFGVIKNVDN 57

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID  +   L +  + R       ++R S  +ILY  D+     ++ AVE AK+    +  
Sbjct: 58  IDEKIKKYLKNWDINRIAKIDLAIMRCSFYEILYSTDIPSSVSINEAVEIAKKYSTEKSP 117

Query: 121 AKLVNSILRR 130
           A  +N IL  
Sbjct: 118 A-FINGILGN 126


>gi|297665065|ref|XP_002810928.1| PREDICTED: putative methyltransferase NSUN4-like [Pongo abelii]
          Length = 384

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMDYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSTSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRLFMDTFCFFSSCQVGEL 363

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   +RRL 
Sbjct: 364 VIPNLMANFGP-------MYFCKMRRLT 384


>gi|261822526|ref|YP_003260632.1| transcription antitermination protein NusB [Pectobacterium wasabiae
           WPP163]
 gi|261606539|gb|ACX89025.1| NusB antitermination factor [Pectobacterium wasabiae WPP163]
          Length = 139

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E+   + + +   D    R ++        ++D ++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDIAYFRELLAGVATQAEKLDQLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   +       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRHIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|324512401|gb|ADY45138.1| Methyltransferase [Ascaris suum]
          Length = 473

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 87/240 (36%), Gaps = 27/240 (11%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278
             WW+ D  + IPV      +  ++LD+CAAPGGK+   I +G        D    RL +
Sbjct: 239 PSWWLLDGGSIIPVLALDLADGDTLLDMCAAPGGKSLLAIQTGLPEKVVCNDYKLSRLGQ 298

Query: 279 LRCNLDRLHLYAEDI---------IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           LR  L        D+            D   +    ++D VLVDAPCS+      H +  
Sbjct: 299 LRRALSTFLPLDSDVADRVILKRKDASDIQRWDEMAVYDKVLVDAPCSTDRLAANHDEGN 358

Query: 330 WTRDTDDIVKS--ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RS 383
                    +      Q KLL+  +  V+ GG VV+S C+L    +E VV+  +      
Sbjct: 359 MFAIPMTTERLNLPQLQTKLLINALRSVRVGGSVVYSTCTLSPVQNETVVENAVAIASER 418

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIR---ITPDMLEKIDGVSSGMDGFFAVALRR 440
             + +    L           +    E   R   + P +              +   L+R
Sbjct: 419 FGLKIVEQTLEQLERHLTSSGLFRFGENCRRGSLVVPFLPSNFGP-------MYVCKLQR 471


>gi|222823552|ref|YP_002575126.1| transcription antitermination factor NusB [Campylobacter lari
           RM2100]
 gi|254772621|sp|B9KFP0|NUSB_CAMLR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222538774|gb|ACM63875.1| transcription antitermination factor NusB [Campylobacter lari
           RM2100]
          Length = 132

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL      + +    ++    +   R      +     + N     L
Sbjct: 1   MATRHQVRQSIVSLLYAAQLNQENKD-FINEFLDEKKIRN---DQRKFTLDLYNGINEQL 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D  ++  L    L       + +LR+   +IL+       +++ A+E AK    + +
Sbjct: 57  ALLDEKINECLKEHKLDGVASIEKAILRLGAYEILFTSTQKAIIINEAIELAKEMAGD-N 115

Query: 120 FAKLVNSILRRVSR 133
             K +N +L ++++
Sbjct: 116 APKFINGVLDKINK 129


>gi|323140958|ref|ZP_08075870.1| transcription antitermination factor NusB [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414561|gb|EFY05368.1| transcription antitermination factor NusB [Phascolarctobacterium
           sp. YIT 12067]
          Length = 154

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 24/152 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-DQIL----------V 49
           M   + AR V+   L  +      +   +D    +          D+ L           
Sbjct: 1   MIRRL-AREVALQALFQIDFTGNEVEQAVDAALDEHEELHPEAAVDKALDQHKELGAASA 59

Query: 50  RA--------IVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD--V 98
           R         +VN  +     IDA L+      ++ R   + + +LRV+V ++ +    +
Sbjct: 60  RNYVKKYSMVLVNGVVENKEAIDATLNSCATDWTVERMPATDRNILRVAVFEMRHEKPAL 119

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           A    ++ AVE AK         + +N +L +
Sbjct: 120 AAGVAINEAVEIAKAY-GTEESPRFINGVLGK 150


>gi|289450308|ref|YP_003475512.1| transcription antitermination factor NusB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184855|gb|ADC91280.1| transcription antitermination factor NusB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 151

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 4/135 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-SAFRLLSQRDQILVRAIVNVTLRF 59
           MK    AR  +   L  +  +   +    +               D   +  +V+  ++ 
Sbjct: 1   MK-RREAREQAFKFLYQIQVQTDDIPAQREYFLRSCRDEFGFEDADISYITGVVDGVIKE 59

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
               D  +   L   ++ R       +LR+++ +I Y  VA   + + AV  AK+     
Sbjct: 60  TAEFDRQISTCLKKWTVDRLPCVDLAILRLALYEIKYEHVAFSIIANEAVLLAKKYSTEE 119

Query: 119 HFAKLVNSILRRVSR 133
             +  +N IL ++  
Sbjct: 120 SRS-YINGILGKLMP 133


>gi|219681813|ref|YP_002468199.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682368|ref|YP_002468752.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471515|ref|ZP_05635514.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|254772618|sp|B8D9P0|NUSB_BUCA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772619|sp|B8D7Z2|NUSB_BUCAT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219622101|gb|ACL30257.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624656|gb|ACL30811.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311086189|gb|ADP66271.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311087353|gb|ADP67433.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 143

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +  +L        ++         +   + +   D +    ++     
Sbjct: 1   MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNI---DIVYFYELIIGITY 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               ID ++   L  SL    +  + +LR+S  ++    D+     ++  +E AK    +
Sbjct: 58  DCKNIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAK-LFGS 116

Query: 118 RHFAKLVNSILRR 130
               K +N +L +
Sbjct: 117 EDSHKFINGVLDK 129


>gi|291276400|ref|YP_003516172.1| transcription termination protein [Helicobacter mustelae 12198]
 gi|290963594|emb|CBG39426.1| transcription termination protein [Helicobacter mustelae 12198]
          Length = 130

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR      L       + +  +      +   R    + Q     + +  L+ L
Sbjct: 1   MATRSQAREAVIGFLYAYDIGNLEIRKMAVDILEEKKIRN---KQQSFALDLFDGILKNL 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D  +   L      +     + +LR+   +IL   +    V++ A+E AK       
Sbjct: 58  DLLDEQITRHLKDWEFKKLGGMERAILRLGAYEILCCQIDKPIVINEAIELAKSY-GEEM 116

Query: 120 FAKLVNSILRR 130
             KL+N +L  
Sbjct: 117 APKLINGVLDS 127


>gi|257063533|ref|YP_003143205.1| transcription antitermination factor NusB [Slackia
           heliotrinireducens DSM 20476]
 gi|256791186|gb|ACV21856.1| transcription antitermination factor NusB [Slackia
           heliotrinireducens DSM 20476]
          Length = 183

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L         +  ++D          L+       R ++      +  ID  +
Sbjct: 11  RRAALQVLYESDILGTPVDKVVDEGVV-PEEAALND----YARRLLLGVASHITDIDRQI 65

Query: 68  DFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
                +  + R     + LLR++V ++ ++D V     ++ AVE AK    +  + + VN
Sbjct: 66  SKSSKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTY-RFVN 124

Query: 126 SILRRVSREK 135
            IL R++R  
Sbjct: 125 GILGRIARTM 134


>gi|197283996|ref|YP_002149868.1| transcription antitermination protein NusB [Proteus mirabilis
           HI4320]
 gi|227358135|ref|ZP_03842476.1| N utilization substance protein B [Proteus mirabilis ATCC 29906]
 gi|238693150|sp|B4EU20|NUSB_PROMH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194681483|emb|CAR40329.1| N utilization substance protein B [Proteus mirabilis HI4320]
 gi|227161471|gb|EEI46508.1| N utilization substance protein B [Proteus mirabilis ATCC 29906]
          Length = 137

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +         +  +      +   + +   D    R ++        R+D  ++
Sbjct: 11  ECAVQAIYSWQLSGNDIADVELEFLSEQDTQGV---DIAYFRELLVGVAINAARLDKAME 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++ +  DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAK-VFGADDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|260772216|ref|ZP_05881132.1| transcription termination protein NusB [Vibrio metschnikovii CIP
           69.14]
 gi|260611355|gb|EEX36558.1| transcription termination protein NusB [Vibrio metschnikovii CIP
           69.14]
          Length = 156

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 13/145 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50
            +  NAR  +   +      + ++  + +       +                 D    R
Sbjct: 8   AARRNARQFALQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALSAPQTDVTYFR 67

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
            ++   +     +D+ L   +   +         LLR+++ ++    DV    V++ A+E
Sbjct: 68  DLLVGVVLNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127

Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134
            AK         K VN +L + +  
Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151


>gi|311086765|gb|ADP66846.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
          Length = 143

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +  +L        ++         +   + +   D +    ++     
Sbjct: 1   MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNI---DIVYFYELIIGITY 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               ID ++   L  SL    +  + +LR+S  ++    D+     ++  +E AK    +
Sbjct: 58  DCKNIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAK-LFGS 116

Query: 118 RHFAKLVNSILRR 130
               K +N +L +
Sbjct: 117 EDSHKFINGVLDK 129


>gi|46579608|ref|YP_010416.1| N utilization substance protein B [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602904|ref|YP_967304.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
 gi|81566935|sp|Q72CT6|NUSB_DESVH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215687|sp|A1VEL1|NUSB_DESVV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|46449023|gb|AAS95675.1| N utilization substance protein B [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563133|gb|ABM28877.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
 gi|311233412|gb|ADP86266.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1]
          Length = 153

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS---AFRLLSQRDQILVRAIVNVTLRF 59
           S   AR ++  +L  +     +    L   Y  S   A +  S + +     ++      
Sbjct: 8   SRRAARALAFQILYGLGFSPAASVKQLREAYASSPDVADKGRSPQPEGFAWELIEGIWTE 67

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ID V+     +  + R       LLR++V ++LY +DV     ++ A+E +K+   +
Sbjct: 68  QANIDEVIGLFSQNWRIDRIGRVELTLLRIAVYEMLYRIDVPPKVAINEALELSKQF-GD 126

Query: 118 RHFAKLVNSILR 129
            +    +N IL 
Sbjct: 127 ANARGFINGILD 138


>gi|294941214|ref|XP_002783051.1| hypothetical protein Pmar_PMAR026099 [Perkinsus marinus ATCC 50983]
 gi|239895270|gb|EER14847.1| hypothetical protein Pmar_PMAR026099 [Perkinsus marinus ATCC 50983]
          Length = 113

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%)

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
                APCS  GT+R+ PD+      +  +     QR +L +  + VK GG++V+S C+L
Sbjct: 1   MCDCQAPCSGDGTLRKSPDLWSRWHPNAGLSCHRLQRSILKRTATLVKVGGVIVYSTCAL 60

Query: 369 DKQDSEEVVQKVLRSSPIPVEL 390
           +  + E VV  V+ +S   +EL
Sbjct: 61  NPIEDEAVVGSVVAASEGALEL 82


>gi|313837743|gb|EFS75457.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA2]
 gi|314927375|gb|EFS91206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL044PA1]
 gi|314972681|gb|EFT16778.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA3]
 gi|328907460|gb|EGG27226.1| transcription antitermination factor NusB [Propionibacterium sp.
           P08]
          Length = 256

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 8/150 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +  +L            +L           ++   +     +V        
Sbjct: 30  STRSKARKQALDILFEADLMGTDPLEVL----AARPSVFINPV-RPFAADLVRGVAATQA 84

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +D+VL   L    +L R     + L R+   +IL+ D  + AV+  A+E ++       
Sbjct: 85  GLDSVLADCLSEGWTLDRMPRVDRILARLGTFEILHTDTPNPAVISEAIELSEEF-STDD 143

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIP 149
            A  +N +L  V       ++ +     IP
Sbjct: 144 SAPFLNGLLSAVISHGPARVEDLPSDDAIP 173


>gi|260596785|ref|YP_003209356.1| transcription antitermination protein NusB [Cronobacter turicensis
           z3032]
 gi|260215962|emb|CBA28587.1| N utilization substance protein B homolog [Cronobacter turicensis
           z3032]
          Length = 139

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L            + D+EY   A + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSH---NDIADVEYQFLAEQDVKDVDVMYFRELLSGVATNSGYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + +      
Sbjct: 127 LDKAAPYIRPN 137


>gi|325693662|gb|EGD35581.1| N utilization substance protein B [Streptococcus sanguinis SK150]
          Length = 143

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 13/123 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-------QILVRAIVNVTLRFL 60
           R  +   L  +  +      L++      ++      D          +  +V+  ++  
Sbjct: 13  RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEDADNAAEADIPAFLLNLVSGVVQSK 68

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +
Sbjct: 69  DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128

Query: 119 HFA 121
              
Sbjct: 129 SSK 131


>gi|226329105|ref|ZP_03804623.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198]
 gi|225202291|gb|EEG84645.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198]
          Length = 137

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +         +  +      +   + +   D    R ++        R+D  ++
Sbjct: 11  ECAVQAIYSWQLSGNDIADVELEFLSEQDTQGV---DIAYFRELLVGVAINATRLDKAME 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++ +  DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAK-VFGADDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|170288851|ref|YP_001739089.1| NusB antitermination factor [Thermotoga sp. RQ2]
 gi|281412471|ref|YP_003346550.1| NusB antitermination factor [Thermotoga naphthophila RKU-10]
 gi|238688836|sp|B1LAQ8|NUSB_THESQ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|170176354|gb|ACB09406.1| NusB antitermination factor [Thermotoga sp. RQ2]
 gi|281373574|gb|ADA67136.1| NusB antitermination factor [Thermotoga naphthophila RKU-10]
          Length = 142

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 1   MK-SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      RL     L     R+   L  +L+    ++  +   +  +  +R        
Sbjct: 1   MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIR----GIKE 56

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
            LP ID ++   L   SL R     + +LR++  ++L+  D+     +D A+E AKR   
Sbjct: 57  NLPMIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRY-G 115

Query: 117 NRHFAKLVNSILRRVSREK 135
             +  K VN IL R+++E 
Sbjct: 116 TENSGKFVNGILDRIAKEH 134


>gi|322386860|ref|ZP_08060484.1| N utilization substance protein B [Streptococcus cristatus ATCC
           51100]
 gi|321269142|gb|EFX52078.1| N utilization substance protein B [Streptococcus cristatus ATCC
           51100]
          Length = 145

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 41/123 (33%), Gaps = 4/123 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--DQILVRAIVNVTLRFL 60
           S    R  +   L  +  +  ++         D               +  +V   L+  
Sbjct: 8   SRRELRQRAFQALMSLEYEGDAIEACRFAYTYDKDEEETDAEVNIPAFLLNLVTGVLQSK 67

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L    ++ R     + +LR+ + ++   D  +   V+ A+E +K+  + +
Sbjct: 68  EELDKKIAQHLKAGWTVERLTLVEKNILRLGIFEMTEFDTPERVAVNEAIELSKQFSDEK 127

Query: 119 HFA 121
              
Sbjct: 128 SSK 130


>gi|311280694|ref|YP_003942925.1| NusB antitermination factor [Enterobacter cloacae SCF1]
 gi|308749889|gb|ADO49641.1| NusB antitermination factor [Enterobacter cloacae SCF1]
          Length = 139

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + +      
Sbjct: 127 LDKAAPAIRPH 137


>gi|156935035|ref|YP_001438951.1| transcription antitermination protein NusB [Cronobacter sakazakii
           ATCC BAA-894]
 gi|166215688|sp|A7MFG4|NUSB_ENTS8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|156533289|gb|ABU78115.1| hypothetical protein ESA_02886 [Cronobacter sakazakii ATCC BAA-894]
          Length = 139

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L            + D+EY   A + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSH---NDIADVEYQFLAEQDVKDVDVMYFRELLSGVATNSGYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + +      
Sbjct: 127 LDKAAPHIRPN 137


>gi|15617061|ref|NP_240274.1| transcription antitermination protein NusB [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11134003|sp|P57535|NUSB_BUCAI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|25299794|pir||H84983 N utilization substance protein B [imported] - Buchnera sp.
           (strain APS)
 gi|10039126|dbj|BAB13160.1| N utilization substance protein B [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 143

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +  +L        ++         +   + +   D +    ++     
Sbjct: 1   MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNI---DIVYFYELIIGITY 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
               ID ++   L  SL    +  + +LR+S  ++    D+     ++  +E AK    +
Sbjct: 58  DCKNIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAK-LFGS 116

Query: 118 RHFAKLVNSILRR 130
               K +N +L +
Sbjct: 117 EDSHKFINGVLDK 129


>gi|332141882|ref|YP_004427620.1| transcription antitermination protein NusB [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|238693257|sp|B4RVY5|NUSB_ALTMD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|327551904|gb|AEA98622.1| transcription antitermination protein NusB [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 140

 Score = 76.9 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  +   AR ++   +      ++S   +  +E   +    + + D    +A++     
Sbjct: 1   MKVSARRKARELALQGVYSW---QMSHNDIQQVELALATSNDMQKVDMAYFQALLRGVAH 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
              ++DA +   L           + +LR++  ++   +DV    +++ A+E AK     
Sbjct: 58  NASKLDATIKPYLGRLPEELDAIEKAILRIATLELTERIDVPYRVIINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K +N  L +
Sbjct: 117 EESHKFINGALDK 129


>gi|54293711|ref|YP_126126.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens]
 gi|54296754|ref|YP_123123.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris]
 gi|148360619|ref|YP_001251826.1| transcription termination factor NusB [Legionella pneumophila str.
           Corby]
 gi|296106315|ref|YP_003618015.1| N utilization substance protein B [Legionella pneumophila 2300/99
           Alcoy]
 gi|81601476|sp|Q5WYH2|NUSB_LEGPL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81601958|sp|Q5X720|NUSB_LEGPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215694|sp|A5IGI0|NUSB_LEGPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|53750539|emb|CAH11941.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris]
 gi|53753543|emb|CAH14998.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens]
 gi|148282392|gb|ABQ56480.1| transcription termination factor NusB [Legionella pneumophila str.
           Corby]
 gi|295648216|gb|ADG24063.1| N utilization substance protein B [Legionella pneumophila 2300/99
           Alcoy]
 gi|307609522|emb|CBW99020.1| hypothetical protein LPW_08051 [Legionella pneumophila 130b]
          Length = 147

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 5/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  +   L   +     L  +            + + D      ++      +  ++A 
Sbjct: 12  ARKFALQALYQWLMSGTDLHEIEAQF---RTINNMDKVDGEYFCRLLYGIPTHVEALEAS 68

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L   L   +         +LR+   ++ +  ++    ++D +V   K    ++   + VN
Sbjct: 69  LLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEF-GSQEGYRYVN 127

Query: 126 SILRR 130
            +L  
Sbjct: 128 GVLNN 132


>gi|163738657|ref|ZP_02146071.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107]
 gi|163742958|ref|ZP_02150341.1| putative N utilization substance protein B [Phaeobacter
           gallaeciensis 2.10]
 gi|161383641|gb|EDQ08027.1| putative N utilization substance protein B [Phaeobacter
           gallaeciensis 2.10]
 gi|161387985|gb|EDQ12340.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107]
          Length = 163

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +    ++   ++                +++ D    R ++  
Sbjct: 19  MKS--ASRLYAVQALFQMEHSNLTFDKVIVEFEDHRFGAVYDGDEMAEGDTKSFRKLIEG 76

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +    +ID + D  L     + R   +L+ L R + A+ L        V++  V+ A+ 
Sbjct: 77  AVNEQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFLAGKTPPKVVINEFVDIARA 136

Query: 114 DKENRHFAKLVNSILRRV 131
                   K VN++L  +
Sbjct: 137 FFPEGKEPKFVNAVLDHM 154


>gi|260887340|ref|ZP_05898603.1| transcription antitermination factor NusB [Selenomonas sputigena
           ATCC 35185]
 gi|260862976|gb|EEX77476.1| transcription antitermination factor NusB [Selenomonas sputigena
           ATCC 35185]
          Length = 160

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 3   SGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVT 56
           S   AR  +   L  +        +      +   D+A   +    +RD     ++V  T
Sbjct: 22  SRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRGT 81

Query: 57  LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKR 113
              L  ID  +        L R     + ++R+++ ++ Y    V     ++ AVE AK+
Sbjct: 82  REHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKK 141

Query: 114 DKENRHFAKLVNSI 127
                  ++ VN I
Sbjct: 142 F-GTDDSSRYVNGI 154


>gi|329898127|ref|ZP_08272329.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC3088]
 gi|328920907|gb|EGG28339.1| Transcription termination protein NusB [gamma proteobacterium
           IMCC3088]
          Length = 147

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +   L        S T +      D  F   S  D    +A+++  ++    I
Sbjct: 12  RHKARHYTVQALYRWHMNEQSSTDIEAEFRIDYDF---SHVDLEYFQALLHGVVKTHASI 68

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122
           DA L+ +L   L         +LR+ + ++   LDV    V++ AV   ++        K
Sbjct: 69  DAYLEPLLDRKLDDLDAVELAILRMGLFELKERLDVPFKVVINEAVSLTRKFGATDG-HK 127

Query: 123 LVNSILRR 130
            +N +L +
Sbjct: 128 YINGVLDK 135


>gi|325833527|ref|ZP_08165976.1| transcription antitermination factor NusB [Eggerthella sp. HGA1]
 gi|325485451|gb|EGC87920.1| transcription antitermination factor NusB [Eggerthella sp. HGA1]
          Length = 200

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +AR  +  +L        S   + + +        L +        +V         I
Sbjct: 8   RTSARRAALQVLYTSEITDESPAAIAEGDRRLEEDGPLPE----YALMLVRGVESHRIAI 63

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D  L     + SL R     + +LR++  +++Y  DV     ++ AVE AK         
Sbjct: 64  DNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDESH 123

Query: 122 KLVNSILRRVSREKIELLQRIAGIS 146
           + VN IL R+++       + A   
Sbjct: 124 RFVNGILGRIAKMLEGEESQEADAP 148


>gi|209964638|ref|YP_002297553.1| transcription antitermination protein NusB, putative
           [Rhodospirillum centenum SW]
 gi|209958104|gb|ACI98740.1| transcription antitermination protein NusB, putative
           [Rhodospirillum centenum SW]
          Length = 179

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLPRIDAV 66
              L  +          +         + +        D  L   IV   +     +D +
Sbjct: 37  VQALYQIELGGTPSETAIGEFVRHRLGQEIDGDRYVSADPQLFADIVRGVMARQADVDQL 96

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +  VL     L R +  L+ +LR    ++L    VA + V++  ++        R    +
Sbjct: 97  VTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGRE-PGM 155

Query: 124 VNSILRRVSREKIELLQ 140
           VN +L R++R+      
Sbjct: 156 VNGVLDRIARQLRPEEM 172


>gi|148270186|ref|YP_001244646.1| transcription antitermination protein NusB [Thermotoga petrophila
           RKU-1]
 gi|166215727|sp|A5ILJ7|NUSB_THEP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147735730|gb|ABQ47070.1| NusB antitermination factor [Thermotoga petrophila RKU-1]
          Length = 142

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 9/139 (6%)

Query: 1   MK-SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      RL     L     R+   L  +L+    ++  +   +  +  +R        
Sbjct: 1   MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIR----GIKE 56

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
            LP ID ++   L   SL R     + +LR++  ++L+  D+   A +D A+E AKR   
Sbjct: 57  NLPMIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEATIDEAIEIAKRY-G 115

Query: 117 NRHFAKLVNSILRRVSREK 135
             +  K VN IL R+++E 
Sbjct: 116 TENSGKFVNGILDRIAKEH 134


>gi|325180419|emb|CCA14824.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 503

 Score = 76.5 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 88/265 (33%), Gaps = 40/265 (15%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQ---------- 258
           +       EG   +QD ++  P          N   ++D CAAPG KT+           
Sbjct: 196 VYDHDLVKEGKLILQDKASCFPAYVLLSDPAWNGGDIIDACAAPGNKTSHLAMLLDKKAV 255

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDA----FDYCPKKLFDAVLVD 313
            + + +KV A D S  RL+ L   L              D               A+L+D
Sbjct: 256 GMSTKSKVFAFDRSAARLKILESRLKSCGADGIVLASCQDFLNTDIHDPRYANVKAILLD 315

Query: 314 APCSSTGTIRRHPDV-----LWTRDTDDIVKSACFQRKLLLQGIS----FVKPG------ 358
             CS +G   R   +            D+ +     +K +    S     ++        
Sbjct: 316 PSCSGSGMNSRFDHLLDIASRPEMTEYDLEQEDGTTQKRIESLASFQLLMLRKAFSFDQV 375

Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRI 415
             VV+S CS+ K ++EEVV   L + P        +     +W    +   +      ++
Sbjct: 376 DRVVYSTCSVFKSENEEVVAAALSTQPADKSNRFQLKECLPHWPRRGIPTDVLSSSDAKL 435

Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440
                 + + +  G +GFF     R
Sbjct: 436 L----VRANAIEDGTNGFFVAYFER 456


>gi|317490198|ref|ZP_07948686.1| transcription antitermination factor NusB [Eggerthella sp.
           1_3_56FAA]
 gi|316910692|gb|EFV32313.1| transcription antitermination factor NusB [Eggerthella sp.
           1_3_56FAA]
          Length = 200

 Score = 76.5 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +AR  +  +L        S   + + +        L +        +V         I
Sbjct: 8   RTSARRAALQVLYTSEITDESPAAIAEGDRRLEEDGPLPE----YALMLVRGVESHRIAI 63

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D  L     + SL R     + +LR++  +++Y  DV     ++ AVE AK         
Sbjct: 64  DNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDESH 123

Query: 122 KLVNSILRRVSREKIELLQRIAGIS 146
           + VN IL R+++       + A   
Sbjct: 124 RFVNGILGRIAKMLEGEEGQEADAP 148


>gi|313235158|emb|CBY25030.1| unnamed protein product [Oikopleura dioica]
          Length = 417

 Score = 76.5 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 23/246 (9%)

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVS 262
                +I  L    EG   +QD ++ +P  +       +VLD  AAPG KT   A  +  
Sbjct: 187 FHSSTNIADLFLNKEGYLIIQDRASCLPPFVLAPKEGETVLDCTAAPGNKTHQLASAVGR 246

Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSST 319
             KV A +   +R   L   + +L+       +   +       K   D   +    S +
Sbjct: 247 KGKVIACEADPKRFRLLSSRMKQLYAGEIVESKFQDYLKIDVTQKPWSDCTKIMLDPSCS 306

Query: 320 GTIRRHPDVLWTRDTDDIVKS-ACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSEEVV 377
           G+   H  ++  +D  + ++S A FQ + LL+  +F  P    + +S CS   +++ EVV
Sbjct: 307 GSGMAHRRIMQEQDPKERIESLAKFQEEALLKATTF--PNAKEISYSTCSTHDRENNEVV 364

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
             VL ++                 D                    ++  SS  +GFF   
Sbjct: 365 NAVLANAQSWEVANAFKRVPKFCEDSGTN-------------TLSLEPFSSATNGFFVAL 411

Query: 438 LRRLIQ 443
           L+R  +
Sbjct: 412 LKRKDK 417


>gi|205374079|ref|ZP_03226879.1| transcription antitermination protein NusB [Bacillus coahuilensis
           m4-4]
          Length = 129

 Score = 76.5 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 11/132 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +   ++S    L     +S            +  +V  T   L
Sbjct: 1   MK-RHTAREKALQALFQMDMSQLSGQEALTNVTEESEMDD-------YLSKLVLQTETNL 52

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID  +   L   S  R     + +LR++V ++++  DV +   ++ A+E AK    + 
Sbjct: 53  EVIDQKIRENLEKWSFERLAKVDRSILRLTVCEMMFIEDVPNKVAINEAIELAKTF-GDD 111

Query: 119 HFAKLVNSILRR 130
             +K +N++L +
Sbjct: 112 QSSKFINAVLSK 123


>gi|329116212|ref|ZP_08244929.1| transcription antitermination factor NusB [Streptococcus parauberis
           NCFD 2020]
 gi|326906617|gb|EGE53531.1| transcription antitermination factor NusB [Streptococcus parauberis
           NCFD 2020]
          Length = 143

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFL 60
            S  + R  +   L  +      L         D       + D    +  +VN      
Sbjct: 7   NSRRDLRERAFQALFNMELGGEFLEASQFAYDYDKIVEEGEKSDVPAFLLNLVNGVNDHK 66

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
             +D ++   L    S+ R   S + +LR+ + +I Y  +  D   ++  +E AK+   +
Sbjct: 67  VELDQLITENLKTGWSIERLTLSDKTMLRLGLYEIKYFEETPDRVALNEIIEIAKKY-SD 125

Query: 118 RHFAKLVNSILRRV 131
              AK +N +L + 
Sbjct: 126 ETSAKFINGLLSQF 139


>gi|228992930|ref|ZP_04152854.1| N utilization substance protein B [Bacillus pseudomycoides DSM
           12442]
 gi|228998974|ref|ZP_04158556.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
 gi|229006513|ref|ZP_04164157.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
 gi|228754739|gb|EEM04140.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
 gi|228760591|gb|EEM09555.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
 gi|228766787|gb|EEM15426.1| N utilization substance protein B [Bacillus pseudomycoides DSM
           12442]
          Length = 120

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L  +           ++    +             + ++V   +     ID  +   
Sbjct: 1   MQALYQMDITGELEPKVAVENTLEEGEETN------EFLESLVVGCVEHKEAIDEAIRQN 54

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           L    L R     + +LR++V ++ Y+ ++     ++ A+E AK    +    + +N +L
Sbjct: 55  LKKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113

Query: 129 RR 130
             
Sbjct: 114 SN 115


>gi|294788786|ref|ZP_06754027.1| transcription antitermination factor NusB [Simonsiella muelleri
           ATCC 29453]
 gi|294483268|gb|EFG30954.1| transcription antitermination factor NusB [Simonsiella muelleri
           ATCC 29453]
          Length = 156

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR      L      +     + +     + F+     D  L  A+   T     
Sbjct: 9   SPRRRAREFVVQALYQAALNQKPAPEIANFLREHTDFKR---ADAELFDALFFGTNANQR 65

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
               ++   L           + +L ++  ++  + +     V++ A+E  K        
Sbjct: 66  AYMMLIRPHLDRDEKLINPIERAILLMATHELKTMPETPHAVVINEAIEVTKTFGGTDSH 125

Query: 121 A 121
            
Sbjct: 126 K 126


>gi|302525862|ref|ZP_07278204.1| transcription antitermination factor NusB [Streptomyces sp. AA4]
 gi|302434757|gb|EFL06573.1| transcription antitermination factor NusB [Streptomyces sp. AA4]
          Length = 152

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +  +L    ++      LL    G      ++         +V        R
Sbjct: 16  SRRQARRRAVEMLYEAAQRSADPVTLLADRVGAVEVDPVAD----YTITVVEGVTAHRER 71

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID +L       +L R       +LRV V ++L+  DV D   +D AV  AK        
Sbjct: 72  IDELLAEHSQGWTLERMPPVDLAVLRVGVYEMLWSADVPDAVAIDEAVGLAKE-LSTDDS 130

Query: 121 AKLVNSILRR 130
            + VN +L R
Sbjct: 131 PRFVNGVLGR 140


>gi|85058631|ref|YP_454333.1| transcription antitermination protein NusB [Sodalis glossinidius
           str. 'morsitans']
 gi|119390825|sp|Q2NV97|NUSB_SODGM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|84779151|dbj|BAE73928.1| N utilization substance protein B [Sodalis glossinidius str.
           'morsitans']
          Length = 139

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L            + D+E    A +  S  D    R +          +D ++ 
Sbjct: 11  ECAVQALYSWQLSH---NDIADIEVQFLAEQDTSDVDVAYFRDLYAGAATNAQELDKLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L    +  + +LR+++ ++    DV     ++ A+E AK         K +N +
Sbjct: 68  PYLSRQLEELGHVERAVLRIALFELSKRQDVPYKVAINEAIELAKTF-GAEESHKFINGV 126

Query: 128 LRRVSREKIEL 138
           L +V+ +    
Sbjct: 127 LDKVAPQIRPN 137


>gi|257792277|ref|YP_003182883.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
 gi|257476174|gb|ACV56494.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
          Length = 195

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +AR  +  +L        S   + +          L +        +V         I
Sbjct: 8   RTSARRAALQVLYTSEITDESPAAIAEGNSRLDEDGPLPE----YALKLVLGVESHRCAI 63

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D  L     + SL R     + +LR++  +++Y  DV     ++ AVE AK         
Sbjct: 64  DNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDESH 123

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154
           + VN IL R+++         A     PE   +
Sbjct: 124 RFVNGILGRIAKMLEGEEDEGAESEGDPEVPAD 156


>gi|152968941|ref|YP_001334050.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893353|ref|YP_002918087.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330006911|ref|ZP_08305783.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3]
 gi|166215693|sp|A6T5E9|NUSB_KLEP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|150953790|gb|ABR75820.1| transcription antitermination protein NusB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545669|dbj|BAH62020.1| transcription antitermination protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328535665|gb|EGF62114.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3]
          Length = 139

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L            + D+EY   A + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSH---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + +      
Sbjct: 127 LDKAAPVIRPH 137


>gi|295106070|emb|CBL03613.1| transcription antitermination factor NusB [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 160

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 6/129 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL          T + +     +    L         A+V         I
Sbjct: 8   RTRARRSALALLYTSEITDEGATKIAEEGRYLAEDGPLPD----YATALVRGVEAHRVAI 63

Query: 64  DAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D  L     +  L R     + +LR++  +++Y  DV     ++ AVE AK         
Sbjct: 64  DKHLAATSENWALARMPIVDRSILRLATYEMMYVDDVPTSVTINEAVELAKDFGGEDESP 123

Query: 122 KLVNSILRR 130
           + VN +L R
Sbjct: 124 RFVNGVLGR 132


>gi|319946361|ref|ZP_08020599.1| N utilization substance protein B [Streptococcus australis ATCC
           700641]
 gi|319747514|gb|EFV99769.1| N utilization substance protein B [Streptococcus australis ATCC
           700641]
          Length = 142

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 2/120 (1%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  + R  +   L  +  +   +         D             +  +V+   +    
Sbjct: 8   SRRDLRERAFQALMSLEYEGDVVEACRFAFTHDKEETDQEVEIPAFLLNLVSGVRQSKDE 67

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + +LR+ V +I   D      V+ A+E AK   + +  
Sbjct: 68  LDKQIAQHLKTGWTVERLTLVEKNILRLGVFEITSFDTPQLVAVNEAIELAKTFSDEKSA 127


>gi|298529745|ref|ZP_07017148.1| NusB antitermination factor [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511181|gb|EFI35084.1| NusB antitermination factor [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 157

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +  +L  +   +     L    +  +      Q+D      ++N     L  
Sbjct: 13  SRHAQREFAFQVLYSLHFDQTGTHILDTFHHFKNDQDTAVQQDMSYALQLINGVRENLEE 72

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +DA +     +  + R       ++R++V +++Y  D+     ++ A+E AK    + + 
Sbjct: 73  LDAAIGRHSQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKVGINEAIELAKTF-GDNNS 131

Query: 121 AKLVNSILRRVSREKIE 137
              VN IL  V+R+   
Sbjct: 132 RNFVNGILDAVARDMRH 148


>gi|319779127|ref|YP_004130040.1| Transcription termination protein NusB [Taylorella equigenitalis
           MCE9]
 gi|317109151|gb|ADU91897.1| Transcription termination protein NusB [Taylorella equigenitalis
           MCE9]
          Length = 144

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 4/122 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
            +   AR +    L   +    S     +D    +         D  L +  +   ++  
Sbjct: 8   SARHTARELVVQGLYSWLLSNESQDIASVDSHIRE--QENFDFADLNLYKTSLYGVIQNA 65

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
             +       +  S          ++ ++  ++L + +     V++ A+E AK       
Sbjct: 66  DSLREEFAPFISRSASELSPVEHAIMLLATYELLHFPETPYRVVINEAIELAKEFGGTDG 125

Query: 120 FA 121
           F 
Sbjct: 126 FK 127


>gi|226941305|ref|YP_002796379.1| transcription antitermination protein NusB [Laribacter
           hongkongensis HLHK9]
 gi|254772644|sp|C1DB31|NUSB_LARHH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226716232|gb|ACO75370.1| NusB [Laribacter hongkongensis HLHK9]
          Length = 165

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 47/133 (35%), Gaps = 6/133 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR  +   +       ++   +      +  F    + D+ L R ++   L  
Sbjct: 1   MKTPRRRAREFAVQGIYQWQLNALTPATIEKNLRDNEQFA---KADEALFRTLLYGVLND 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             RI++ +      +        + +L ++  ++    +     +++ A+E AK      
Sbjct: 58  PVRIESAIASHFERAPEDVSPVERAVLLMAAFELTQQAETPLAVIINEAIEIAKTFGGAE 117

Query: 119 HFAKLVNSILRRV 131
              + VN +L + 
Sbjct: 118 G-HRFVNGVLDKY 129


>gi|218961705|ref|YP_001741480.1| N utilization substance protein B [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730362|emb|CAO81274.1| N utilization substance protein B [Candidatus Cloacamonas
           acidaminovorans]
          Length = 153

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 15/132 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRK------------RISLTCLLDLEYGDSAFRLLSQRDQIL 48
           M     AR ++   L  +                     LL     ++     +      
Sbjct: 1   MGQRRKAREMAVQCLYSLEFSEVEKDYREYGLLNEYPDILLS--LAEAEHIQPNSPVYAF 58

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
              +V  T+  + ++++ +D +  +  L       + +L ++  ++L+ D     V++ A
Sbjct: 59  ADELVKNTIINIEQVESEIDKLSDNWELEDIALLDRSILCLAAYELLFTDTPAPVVINEA 118

Query: 108 VEQAKRDKENRH 119
           +E AK+      
Sbjct: 119 IEIAKKFSSEAS 130


>gi|91774848|ref|YP_544604.1| NusB antitermination factor [Methylobacillus flagellatus KT]
 gi|119390784|sp|Q1H424|NUSB_METFK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91708835|gb|ABE48763.1| NusB antitermination factor [Methylobacillus flagellatus KT]
          Length = 154

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +S   +R +    +   +  +   + ++     D  F    + D    R ++      + 
Sbjct: 14  RSRRKSRELVLKGIYLGLMNQKDTSVIIRELADDPDF---DRADYEYFRQLLEGVAESID 70

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA L  +L   +         +L ++  ++++   +     ++  VE AK        
Sbjct: 71  ELDARLAGLLDRQVSELSPIEHAILCIAAYELIHDVTIPYRVAINEGVELAKLYGGTDG- 129

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 130 HKYVNGVLDK 139


>gi|253990956|ref|YP_003042312.1| transcription antitermination protein NusB [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782406|emb|CAQ85570.1| N utilization substance protein B [Photorhabdus asymbiotica]
          Length = 139

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +            + D+E    + + ++  D    R +++       ++DA++ 
Sbjct: 11  ECAVQAIYSWQLSG---NDIADVELQFLSEQDVTGVDVTYFRELLSGVAVNAVKLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LRV++ ++ Y  DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRVAMFELSYRDDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|50120067|ref|YP_049234.1| transcription antitermination protein NusB [Pectobacterium
           atrosepticum SCRI1043]
 gi|81645878|sp|Q6D847|NUSB_ERWCT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49610593|emb|CAG74038.1| N utilization substance protein B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 139

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E+   + + +   D    R ++        ++D ++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDITYFRELLAGVATQAEKLDQLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   +       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRRIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAK-IFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|73977892|ref|XP_853047.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 4 protein [Canis
           familiaris]
          Length = 384

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 98/261 (37%), Gaps = 29/261 (11%)

Query: 204 RLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                   +   P    G      +++ DA++ +PV   G     +VLDLCAAPGGKT  
Sbjct: 131 CFTFARGDVSRFPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLA 190

Query: 259 LIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------D 308
           L+ +G    + A D+S  R  +L+  L                     + +        D
Sbjct: 191 LLQTGCCRNLAANDLSTSRTGRLQRVLRSYVPQDIRDRNRVRVTSWDGRKWGELEGDTYD 250

Query: 309 AVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            VLVD PC++          ++       +       Q +LL  G+   KPGG +V+S C
Sbjct: 251 RVLVDVPCTTDRHSLREEENNIFQRSRKKERQMLPMLQVQLLAAGLLATKPGGHIVYSTC 310

Query: 367 SLDKQDSEEVVQ---KVLR-SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLE 421
           SL    +E VVQ   + L     I V++  L       +D  +   S +    + P++L 
Sbjct: 311 SLSHLQNEYVVQGTIEFLANQYSIKVQVEDLTHFRKLFMDTFSFFPSCQVGELVIPNLLA 370

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
                       +   + RL 
Sbjct: 371 NFGP-------MYFCKMCRLT 384


>gi|296273814|ref|YP_003656445.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299]
 gi|296097988|gb|ADG93938.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299]
          Length = 132

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     LL         +   +D    D   R    + +     + N  +   
Sbjct: 1   MATRTQARESVIGLLYAYDLGNEGIVKFVDEILEDKKIRN---KQKEFALNLFNGVVNNY 57

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             I+  +   L    +       + +LR+++ +IL+  +    +++ A+E +KR   +  
Sbjct: 58  ALINEHIALHLKQGTIKDIGSVEKSILRLAIYEILFETLDRAIIINEAIELSKR-LASDG 116

Query: 120 FAKLVNSILRR 130
             K +N +L +
Sbjct: 117 APKFINGVLDK 127


>gi|119390836|sp|Q1J532|NUSB_STRPF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 150

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 7   NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVMG 62

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 63  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 123 KY-SDETSAKFINGLLSQY 140


>gi|94995000|ref|YP_603098.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10750]
 gi|94548508|gb|ABF38554.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10750]
          Length = 156

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 13  NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVMG 68

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 69  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 128

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 129 KY-SDETSAKFINGLLSQY 146


>gi|209559915|ref|YP_002286387.1| transcription antitermination protein NusB [Streptococcus pyogenes
           NZ131]
 gi|238055478|sp|B5XI30|NUSB_STRPZ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|209541116|gb|ACI61692.1| N utilization substance B-like protein [Streptococcus pyogenes
           NZ131]
          Length = 150

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 7   NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 63  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 123 KY-SDETSAKFINGLLSQY 140


>gi|71911358|ref|YP_282908.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS5005]
 gi|71854140|gb|AAZ52163.1| N utilization substance protein B [Streptococcus pyogenes MGAS5005]
          Length = 150

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 7   NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 63  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 123 KY-SDETSAKFINGLLSQY 140


>gi|71904194|ref|YP_280997.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS6180]
 gi|94989179|ref|YP_597280.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS9429]
 gi|94993067|ref|YP_601166.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS2096]
 gi|71803289|gb|AAX72642.1| N utilization substance protein B [Streptococcus pyogenes MGAS6180]
 gi|94542687|gb|ABF32736.1| N utilization substance protein B [Streptococcus pyogenes MGAS9429]
 gi|94546575|gb|ABF36622.1| N utilization substance protein B [Streptococcus pyogenes MGAS2096]
          Length = 156

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 13  NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 68

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 69  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 128

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 129 KY-SDETSAKFINGLLSQY 146


>gi|19746754|ref|NP_607890.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS8232]
 gi|21911108|ref|NP_665376.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS315]
 gi|139473181|ref|YP_001127896.1| transcription antitermination protein NusB [Streptococcus pyogenes
           str. Manfredo]
 gi|54037927|sp|P65585|NUSB_STRP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041677|sp|P65584|NUSB_STRP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390833|sp|Q1JA39|NUSB_STRPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390834|sp|Q1JK87|NUSB_STRPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390837|sp|Q48RL8|NUSB_STRPM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215723|sp|A2RCS4|NUSB_STRPG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|19748985|gb|AAL98389.1| putative transcriptional terminator [Streptococcus pyogenes
           MGAS8232]
 gi|21905318|gb|AAM80179.1| putative transcriptional terminator [Streptococcus pyogenes
           MGAS315]
 gi|134271427|emb|CAM29647.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pyogenes str. Manfredo]
          Length = 150

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 7   NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 63  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 123 KY-SDETSAKFINGLLSQY 140


>gi|332653013|ref|ZP_08418758.1| transcription antitermination factor NusB [Ruminococcaceae
           bacterium D16]
 gi|332518159|gb|EGJ47762.1| transcription antitermination factor NusB [Ruminococcaceae
           bacterium D16]
          Length = 164

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL-----------SQRDQILVRA 51
           +   AR ++ HL+  +     S   +LD E     F  L           +++ +  +R 
Sbjct: 2   TRSTAREIAVHLIFSLGFGTQSAEEVLDSELTRERFEELGGESQLYAQFPNEKQERYIRD 61

Query: 52  IVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVE 109
           +V       P +D  +    +  S  R       +LR ++ ++LY+ D+ + A +D AVE
Sbjct: 62  LVRGVFAHGPELDDYIARYAVGWSFARIPRMAAAILRTAMYEVLYMPDIPNAAAIDAAVE 121

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIE 137
             K+ +  +  A  VN IL    R +  
Sbjct: 122 MTKKYE-PQEVAAFVNGILGTFVRTEFP 148


>gi|281351945|gb|EFB27529.1| hypothetical protein PANDA_008148 [Ailuropoda melanoleuca]
          Length = 353

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 98/261 (37%), Gaps = 29/261 (11%)

Query: 204 RLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                   +   P    G      +++ DA++ +PV   G     +VLDLCAAPGGKT  
Sbjct: 100 CFTFARGDVSRFPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLA 159

Query: 259 LIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------D 308
           L+ +G    + A D+S  R  +L+  L                     + +        D
Sbjct: 160 LLQTGCCRNLAANDLSTSRTGRLQRVLHSYVPQDIRDRNRVRVTSWDGRKWGELEGDTYD 219

Query: 309 AVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            VLVD PC++          +V       +       Q +LL  G+   KPGG VV+S C
Sbjct: 220 RVLVDVPCTTDRHSLHEEENNVFQRSRKKERQMLPMLQMQLLAAGLLATKPGGHVVYSTC 279

Query: 367 SLDKQDSEEVVQ---KVLR-SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLE 421
           SL    +E VVQ   + L     I V++  L+      +D  +   S      + P++L 
Sbjct: 280 SLSHLQNEYVVQGTIEFLANQYSIKVQVEDLSHFRKLFMDTFSFFPSCLVGELVIPNLLA 339

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
                       +   + RL 
Sbjct: 340 NFGP-------MYFCKMCRLT 353


>gi|62739650|gb|AAH93978.1| NSUN5B protein [Homo sapiens]
 gi|193785183|dbj|BAG54336.1| unnamed protein product [Homo sapiens]
 gi|193785881|dbj|BAG54668.1| unnamed protein product [Homo sapiens]
          Length = 117

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 14/114 (12%)

Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
               +   A FQ++ L   ++F  ++    +V+S CSL ++++E++V   L+ +P    L
Sbjct: 15  SPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVPDALQQNPGAFRL 71

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            P   A      ++     E  +R +P              GFF   + R+  P
Sbjct: 72  APALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 116


>gi|21552770|gb|AAM62318.1|AF416610_1 Williams-Beuren Syndrome critical region protein 20 copy B [Homo
           sapiens]
          Length = 154

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 14/114 (12%)

Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
               +   A FQ++ L   ++F  ++    +V+S CSL ++++E++V   L+ +P    L
Sbjct: 15  SPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVPDALQQNPGAFRL 71

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            P   A      ++     E  +R +P              GFF   + R+  P
Sbjct: 72  APALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 116


>gi|259503557|ref|ZP_05746459.1| N utilization substance protein B [Lactobacillus antri DSM 16041]
 gi|259168470|gb|EEW52965.1| N utilization substance protein B [Lactobacillus antri DSM 16041]
          Length = 136

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M  +    R  +  +L   ++         +         R L       VR +      
Sbjct: 1   MSLTRHALREEAFQVLFA-LQTNPEADLATIYRSIPHHDERALPD----YVRQLATGVSE 55

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
               +D  +  +L    ++ R   +   +LR+++ ++ Y+D V     ++ A+E AK   
Sbjct: 56  RQADLDEQISGLLASDWTIDRLAKADLIILRLALYELQYVDEVPTAVAINEALELAKEFS 115

Query: 116 ENRHFAKLVNSILRRVSREKI 136
            ++     +N  L R  +E  
Sbjct: 116 SDQSRK-FINGALGRFEKENN 135


>gi|328855456|gb|EGG04582.1| hypothetical protein MELLADRAFT_88623 [Melampsora larici-populina
           98AG31]
          Length = 359

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 102/284 (35%), Gaps = 22/284 (7%)

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL- 236
           I             ++ A  +    +       +I +L  + +G    QD ++ +P QL 
Sbjct: 25  IHFDDFIQRAEDKQQVFARDVHLTCVLALPRTVNINTLAPYLDGRLIAQDKASCMPAQLL 84

Query: 237 ------FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287
                   +   + V+D  AAPG KT  L   + +  KV A +    R E L+  + +  
Sbjct: 85  LGSPTPEESKRRMCVIDATAAPGNKTTMLSALVGTSGKVWAFEKDPERFETLKSMVAKAG 144

Query: 288 LYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRH---PDVLWTRDTDDIVKS 340
               + I  D      +         +L+D  C  +G+   +         RD   I   
Sbjct: 145 CRNVECILGDFLSVKTNDPRFHDVTHILLDPSCCMSGSGISNRLDHLDGSKRDEGRINSL 204

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVELVPLNSAY 397
           A FQ  +L   + F K    V +S CS+ +++ EEVV +VL     S    +L  L  A 
Sbjct: 205 ARFQTTILSHALRF-KSVVQVAYSTCSIWREEDEEVVFRVLAKPEMSKKGWQLKDLTDAL 263

Query: 398 WKSIDMAMALSPEGWI-RITPDMLEKIDGVSSGMDGFFAVALRR 440
                      P     + + D + + D       GFFA    R
Sbjct: 264 KPGKPWKRLGRPRSDAEKASTDRMVRFDPKLDTTIGFFAAVFIR 307


>gi|119384293|ref|YP_915349.1| NusB antitermination factor [Paracoccus denitrificans PD1222]
 gi|119374060|gb|ABL69653.1| NusB antitermination factor [Paracoccus denitrificans PD1222]
          Length = 166

 Score = 76.1 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-------RDQILVRAIVNVTLRFLP 61
           L +   L  +     S   +          R            DQ L   IV+  + +  
Sbjct: 26  LYAVQALFQMEAAGQSADRVQREFLNWRIGREDEDDDIVSAEADQALFTRIVDDAVTWQS 85

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           +ID + D  L     + R    L+ + R + A+++        V+   V  A+       
Sbjct: 86  KIDQMTDRALVAKWPIDRIDPVLRSVFRAAGAELVTPKTPPKVVITEYVRLAQTFFAEGR 145

Query: 120 FAKLVNSILRRV 131
            +K VN++L  +
Sbjct: 146 ESKFVNAVLDHM 157


>gi|157150386|ref|YP_001451127.1| transcription antitermination protein NusB [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075180|gb|ABV09863.1| transcription antitermination factor NusB [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 137

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  + R  +   L  +      +         D       +     +  +VN  ++    
Sbjct: 4   SRRDLRERAFQALMSLEYDGDIVEACRFAYLHDKEEEEQVELPI-FLLNLVNGVMQSKSE 62

Query: 63  IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
           +D  +   L S   L R     + +LR+ + ++L Y +      V+ A+E AK+  + + 
Sbjct: 63  LDDKITQYLKSGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAIELAKKFSDEKS 122

Query: 120 FA 121
             
Sbjct: 123 SK 124


>gi|291398978|ref|XP_002715170.1| PREDICTED: NOL1/NOP2/Sun domain family 4 protein [Oryctolagus
           cuniculus]
          Length = 382

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 22/235 (9%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRR---LE 277
           +++ DA++ +PV   G     +VLDLCAAPGGKT  L+ +G    + A D+S  R   L+
Sbjct: 155 YYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRTGRLQ 214

Query: 278 KLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332
           K+  +     +         +   +       +D VLVD PC++          ++    
Sbjct: 215 KVLHSYVPQGIRDRVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFQRS 274

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLR-SSPIPV 388
              +       Q +LL  G+   KPGG VV+S CSL    +E VVQ   ++L     I V
Sbjct: 275 RKKERQMLPMLQMQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGTMELLANQYSIEV 334

Query: 389 ELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           ++  L     + +D      S      + P+++             +   +RRL 
Sbjct: 335 QVEDLTHFRKRFMDTFCFFPSCRVGELVIPNLMANFGP-------MYFCKMRRLT 382


>gi|198417836|ref|XP_002124670.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 4
           (predicted) [Ciona intestinalis]
          Length = 422

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 101/282 (35%), Gaps = 30/282 (10%)

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           +  + E        V             E+  S+   +    ++ DA + +PV       
Sbjct: 147 MMKEYEELQKVCYGVRAYVYNKGDITEFENPHSIKESSLLPSFLLDAGSLLPVLSLDPQP 206

Query: 242 NLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLY--------A 290
             S+LD+C+APGGK   ++       ++ A D++ +R+ +++                  
Sbjct: 207 GDSILDMCSAPGGKLNVMMQAIGDSGRIVANDINTKRVTRVKNVYKEYIPKQFSVEKFVK 266

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRRHPDVLWT-RDTDDIVKSACFQR 345
               +   +     + +D VLVD PC++         R  D +++     +  +    Q 
Sbjct: 267 IVKFDATQWTEIETEAYDKVLVDVPCTNDRHSLYVSDRETDNIFSTLRKRERAQLPHLQC 326

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIPVELVPLNSAYWKSI 401
           +LL   I   +P G +V+S C+     +E VVQ  ++       I  E+    +      
Sbjct: 327 QLLKNAILACRPNGTIVYSTCTASPLQNEFVVQYAVQELMDQHSISCEVQNTRTLVDLLK 386

Query: 402 DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           D    L+    G + + P +              +   LRRL
Sbjct: 387 DEFYFLTSTSLGEL-VIPKLDANFGP-------MYFCKLRRL 420


>gi|264679471|ref|YP_003279378.1| NusB antitermination factor [Comamonas testosteroni CNB-2]
 gi|299530553|ref|ZP_07043973.1| NusB antitermination factor [Comamonas testosteroni S44]
 gi|262209984|gb|ACY34082.1| NusB antitermination factor [Comamonas testosteroni CNB-2]
 gi|298721529|gb|EFI62466.1| NusB antitermination factor [Comamonas testosteroni S44]
          Length = 178

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +  R     +LD++          + D +   A++   +    
Sbjct: 33  SNRSRAREFALQGLYQHIVGR---NAVLDIDRFTRDLAGFHKADVVHYDALLRGCVENEA 89

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA++   L   L          + + V +     DV    V++  +E AK        
Sbjct: 90  ALDALITPKLDRGLTEISPIEHACMWIGVYEFQNCPDVPWRVVLNECIELAKEFGGTDGH 149

Query: 121 A 121
            
Sbjct: 150 K 150


>gi|84998526|ref|XP_953984.1| hypothetical protein [Theileria annulata]
 gi|65304982|emb|CAI73307.1| hypothetical protein, conserved [Theileria annulata]
          Length = 409

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 8/156 (5%)

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
            +    D   +     FD +L+DAPCSS   +        +    +I +++  Q KLL  
Sbjct: 257 VNYDATDPNKFQRFGKFDKILIDAPCSSERHLINKNL---SWSFKNIKENSKRQLKLLQT 313

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALS 408
            IS +K GG +++  C+LD  ++E V+  +L++      V++   +     +I+    + 
Sbjct: 314 AISLLKSGGTILYCTCALDPIENELVINTILKNYDDIKHVQINYNDLINNININNLKIME 373

Query: 409 PEGWIRITPD---MLEKIDGVSSGMDGFFAVALRRL 441
              + +  P+       I    S     +   L++L
Sbjct: 374 STDYNKFKPEKRTHGCSIMPDKSEFGPLYIAKLQKL 409


>gi|300721781|ref|YP_003711059.1| transcription termination; L factor [Xenorhabdus nematophila ATCC
           19061]
 gi|297628276|emb|CBJ88837.1| transcription termination; L factor [Xenorhabdus nematophila ATCC
           19061]
          Length = 138

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +      ++S   + D+E    + + ++  D    R +++       ++DA++ 
Sbjct: 11  ECAVQAIYSW---QLSNNSIADIELEFLSEQDVTGVDITYFRELLSGVAVNATKLDALMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LRV++ ++ +  DV     ++  +E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|206577191|ref|YP_002240116.1| transcription antitermination factor NusB [Klebsiella pneumoniae
           342]
 gi|288936865|ref|YP_003440924.1| NusB antitermination factor [Klebsiella variicola At-22]
 gi|290510079|ref|ZP_06549449.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55]
 gi|238055476|sp|B5Y0X5|NUSB_KLEP3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206566249|gb|ACI08025.1| transcription antitermination factor NusB [Klebsiella pneumoniae
           342]
 gi|288891574|gb|ADC59892.1| NusB antitermination factor [Klebsiella variicola At-22]
 gi|289776795|gb|EFD84793.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55]
          Length = 139

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L            + D+EY   A + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSH---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|125561302|gb|EAZ06750.1| hypothetical protein OsI_28994 [Oryza sativa Indica Group]
          Length = 222

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
                     ++         FD VL+DAPCS+ G   R          + +   A +QR
Sbjct: 96  PGRNNCSGGRVENSKGFLPNSFDRVLLDAPCSALGL--RPRLFAGEETLESLRNHATYQR 153

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
           ++  Q +  V+PGG++V+S C+++  ++E +V+  L     
Sbjct: 154 RMFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDKYKF 194


>gi|15644510|ref|NP_229562.1| transcription antitermination protein NusB [Thermotoga maritima
           MSB8]
 gi|7387977|sp|Q9X286|NUSB_THEMA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|52695948|pdb|1TZT|A Chain A, T. Maritima Nusb, P21
 gi|52695949|pdb|1TZT|B Chain B, T. Maritima Nusb, P21
 gi|52695950|pdb|1TZU|A Chain A, T. Maritima Nusb, P212121
 gi|52695951|pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1
 gi|52695952|pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2
 gi|52695953|pdb|1TZX|A Chain A, T. Maritima Nusb, P3221
 gi|52695954|pdb|1TZX|B Chain B, T. Maritima Nusb, P3221
 gi|4982344|gb|AAD36829.1|AE001815_3 N utilization substance protein B [Thermotoga maritima MSB8]
 gi|22859189|emb|CAD45556.1| N utilisation substance protein B [Expression vector
           pNCO113-TM-nusB]
          Length = 142

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 9/139 (6%)

Query: 1   MK-SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      RL     L     R+   L  +L+    ++  +   +  +  +R        
Sbjct: 1   MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIR----GIKE 56

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
            L  ID ++   L   SL R     + +LR++  ++L+  D+     +D A+E AKR   
Sbjct: 57  NLSMIDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRY-G 115

Query: 117 NRHFAKLVNSILRRVSREK 135
             +  K VN IL R+++E 
Sbjct: 116 TENSGKFVNGILDRIAKEH 134


>gi|312866399|ref|ZP_07726617.1| transcription antitermination factor NusB [Streptococcus downei
           F0415]
 gi|311098093|gb|EFQ56319.1| transcription antitermination factor NusB [Streptococcus downei
           F0415]
          Length = 139

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKR----ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
           M  S  N R  +   +  +   +     +       +        L       +  +V  
Sbjct: 1   MTESRHNLRERAFQAIFSLEFGQADFLQAANFAYSYDKQGQEGEELEVP--AFLLNLVKG 58

Query: 56  TLRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAK 112
           T+  L  ID ++   L     L R   + + LLR+ + +I Y  +      ++  +E  K
Sbjct: 59  TVDNLTEIDGLISENLKEKWSLERLTLTDRSLLRLGLYEIKYHEETPAKVALNEVIELTK 118

Query: 113 RDKENRHFAKLVNSILRRV 131
               ++  AK +N IL + 
Sbjct: 119 AY-SDQTSAKFINGILTKF 136


>gi|118602517|ref|YP_903732.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567456|gb|ABL02261.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 140

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 43/125 (34%), Gaps = 6/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R      L   +     +   ++ ++ +     +S   +     +    L+    +D +
Sbjct: 10  SRERVVQALYQYLVSGGEI-LQIEQQFLNQKQGKIS---KAFFSNLFINILKNKSLLDEI 65

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +   +     +       +L +   ++ +   V    V++ ++E AK         KL+N
Sbjct: 66  IAPTINRETEQLGAVEHAILYLGAFELKFSPGVPYKIVINESLELAK-LYGAEGAHKLIN 124

Query: 126 SILRR 130
             L +
Sbjct: 125 VSLDK 129


>gi|119390835|sp|Q1JF82|NUSB_STRPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 150

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  +++ D         + ++V  
Sbjct: 7   NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTG 62

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 63  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 123 KY-SDETSAKFINGLLSQY 140


>gi|94991121|ref|YP_599221.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10270]
 gi|94544629|gb|ABF34677.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10270]
          Length = 156

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  +++ D         + ++V  
Sbjct: 13  NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTG 68

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 69  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 128

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 129 KY-SDETSAKFINGLLSQY 146


>gi|325690389|gb|EGD32393.1| N utilization substance protein B [Streptococcus sanguinis SK115]
          Length = 143

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 5/119 (4%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRID 64
           R  +   L  +  +   +         D         +      +  +V+  ++    +D
Sbjct: 13  RQRAFQALMSLEYEGDLVEACRFAYSYDKDEEACKAAEADIPAFLLNLVSGVVQSKDDLD 72

Query: 65  AVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
             +   L     + R     + +LR+ + +I   D      V+ A+E +K+  + +   
Sbjct: 73  KKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131


>gi|238924571|ref|YP_002938087.1| NusB antitermination factor [Eubacterium rectale ATCC 33656]
 gi|259514834|sp|C4ZCZ0|NUSB_EUBR3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238876246|gb|ACR75953.1| NusB antitermination factor [Eubacterium rectale ATCC 33656]
          Length = 131

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R     +L  V     S      +E  +      +  ++  +    +  +  +  
Sbjct: 2   TRSKIRENVFKMLFRVEFHDKS-ELAEQMELLNDELTNPTDEERQYIDEKCSAIIEHMAE 60

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +DA++D         R       ++R++V +I +  D+     ++ AVE AK+   +   
Sbjct: 61  LDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESG 120

Query: 121 A 121
           A
Sbjct: 121 A 121


>gi|254448007|ref|ZP_05061471.1| transcription antitermination factor NusB [gamma proteobacterium
           HTCC5015]
 gi|198262433|gb|EDY86714.1| transcription antitermination factor NusB [gamma proteobacterium
           HTCC5015]
          Length = 188

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS----AFRLLSQRDQILVRAIVNVTLR 58
           +    R      L       +  + L+   Y D         +   D    +A ++  + 
Sbjct: 47  ARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGNDMFGVDADFFQAALSTCVD 106

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
              ++D +    L   + R       +LR++V ++   LDV    V++ AVE AK     
Sbjct: 107 KTEQLDELYCAHLKMPIDRLDPVELCILRLAVFELSERLDVPRRVVINEAVELAKSY-GA 165

Query: 118 RHFAKLVNSILRRVSREKIEL 138
               K +N ++ + +R+    
Sbjct: 166 EDGHKFINGVIDKTARDLRPH 186


>gi|319789884|ref|YP_004151517.1| NusB antitermination factor [Thermovibrio ammonificans HB-1]
 gi|317114386|gb|ADU96876.1| NusB antitermination factor [Thermovibrio ammonificans HB-1]
          Length = 142

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR  +  ++  V    + L  + +  + D        ++  L   +V  T+  L  +D 
Sbjct: 10  KAREHACLIMYQVDVGNLPLKEVTENYWSDFGKEKEEIKE--LSEYLVKKTIEHLEEVDR 67

Query: 66  VLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAK 122
            +   L     + R     + +LRV+  +IL  ++    AV++ AVE AK   E+    K
Sbjct: 68  AIGKHLKKGWVIERLLPMDRSILRVASYEILNEEISPPEAVINDAVEIAKSYGEDEKSPK 127

Query: 123 LVNSILRR 130
            +N+IL +
Sbjct: 128 FINAILDK 135


>gi|16763798|ref|NP_459413.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56414427|ref|YP_151502.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179029|ref|YP_215446.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|157146968|ref|YP_001454287.1| transcription antitermination protein NusB [Citrobacter koseri ATCC
           BAA-895]
 gi|161504397|ref|YP_001571509.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615394|ref|YP_001589359.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551771|ref|ZP_02345524.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992268|ref|ZP_02573366.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168232391|ref|ZP_02657449.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237531|ref|ZP_02662589.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168240241|ref|ZP_02665173.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261149|ref|ZP_02683122.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465508|ref|ZP_02699390.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168818971|ref|ZP_02830971.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445003|ref|YP_002039660.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449230|ref|YP_002044453.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194470791|ref|ZP_03076775.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735835|ref|YP_002113451.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249816|ref|YP_002145400.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197265909|ref|ZP_03165983.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363347|ref|YP_002142984.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243030|ref|YP_002214372.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390221|ref|ZP_03216832.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926733|ref|ZP_03217935.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205351729|ref|YP_002225530.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855899|ref|YP_002242550.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224582256|ref|YP_002636054.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|237730392|ref|ZP_04560873.1| transcription antitermination protein NusB [Citrobacter sp. 30_2]
 gi|238911449|ref|ZP_04655286.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|283834267|ref|ZP_06354008.1| transcription antitermination factor NusB [Citrobacter youngae ATCC
           29220]
 gi|22095957|sp|Q8ZRD3|NUSB_SALTY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|75484594|sp|Q57SE6|NUSB_SALCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81599425|sp|Q5PFS9|NUSB_SALPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215680|sp|A8AK38|NUSB_CITK8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035901|sp|A9MM45|NUSB_SALAR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035902|sp|A9MX13|NUSB_SALPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689944|sp|B5BDB4|NUSB_SALPK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689999|sp|B5EXF9|NUSB_SALA4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690220|sp|B4T8Q9|NUSB_SALHS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690323|sp|B5FKS3|NUSB_SALDC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690385|sp|B5QTG6|NUSB_SALEP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690477|sp|B5R6R9|NUSB_SALG2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690694|sp|B4TM98|NUSB_SALSV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238693540|sp|B4SWR0|NUSB_SALNS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772653|sp|C0Q7U3|NUSB_SALPC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|16418923|gb|AAL19372.1| transcription termination; L factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56128684|gb|AAV78190.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62126662|gb|AAX64365.1| transcription termination; L factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|157084173|gb|ABV13851.1| hypothetical protein CKO_02745 [Citrobacter koseri ATCC BAA-895]
 gi|160865744|gb|ABX22367.1| hypothetical protein SARI_02508 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161364758|gb|ABX68526.1| hypothetical protein SPAB_03165 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403666|gb|ACF63888.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194407534|gb|ACF67753.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457155|gb|EDX45994.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711337|gb|ACF90558.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631893|gb|EDX50413.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094824|emb|CAR60357.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213519|gb|ACH50916.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197244164|gb|EDY26784.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289580|gb|EDY28943.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937546|gb|ACH74879.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602666|gb|EDZ01212.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323398|gb|EDZ08593.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205271510|emb|CAR36328.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323516|gb|EDZ11355.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329474|gb|EDZ16238.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333370|gb|EDZ20134.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205340408|gb|EDZ27172.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343985|gb|EDZ30749.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349770|gb|EDZ36401.1| transcription termination/antitermination factor NusB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707702|emb|CAR31986.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224466783|gb|ACN44613.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|226905931|gb|EEH91849.1| transcription antitermination protein NusB [Citrobacter sp. 30_2]
 gi|261245701|emb|CBG23497.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992129|gb|ACY87014.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|291069789|gb|EFE07898.1| transcription antitermination factor NusB [Citrobacter youngae ATCC
           29220]
 gi|301157029|emb|CBW16512.1| N utilization substance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911451|dbj|BAJ35425.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084694|emb|CBY94485.1| N utilization substance protein B homolog Protein nusB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225145|gb|EFX50206.1| Transcription termination protein NusB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614698|gb|EFY11627.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618804|gb|EFY15692.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623511|gb|EFY20350.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629191|gb|EFY25970.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631911|gb|EFY28665.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637352|gb|EFY34054.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642037|gb|EFY38647.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647856|gb|EFY44331.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652534|gb|EFY48888.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653304|gb|EFY49637.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660547|gb|EFY56783.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664699|gb|EFY60892.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669248|gb|EFY65398.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670793|gb|EFY66926.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678968|gb|EFY75023.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681996|gb|EFY78021.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685175|gb|EFY81172.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322713490|gb|EFZ05061.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323128737|gb|ADX16167.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194477|gb|EFZ79672.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196986|gb|EFZ82128.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203971|gb|EFZ88988.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206944|gb|EFZ91897.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210838|gb|EFZ95710.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214529|gb|EFZ99280.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323223086|gb|EGA07429.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227035|gb|EGA11216.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230147|gb|EGA14267.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233885|gb|EGA17974.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238421|gb|EGA22479.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244109|gb|EGA28118.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246269|gb|EGA30252.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251895|gb|EGA35758.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257892|gb|EGA41571.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261095|gb|EGA44687.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264975|gb|EGA48474.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272538|gb|EGA55945.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622120|gb|EGE28465.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626764|gb|EGE33107.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987366|gb|AEF06349.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 139

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|159897280|ref|YP_001543527.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
 gi|254772643|sp|A9AXI5|NUSB_HERA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|159890319|gb|ABX03399.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
          Length = 146

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R  +   L  + +    L  ++     D  F   S   +     IVN        I
Sbjct: 10  RHRVRAAALQALFELDQTTHDLDSVVARISDDEMF---SAEGRDFFARIVNGAWVNRQEI 66

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKENR 118
           D ++  +     + +       +LR+++ +ILY          AV++ AVE AK    + 
Sbjct: 67  DDLIAKIAPSWPVHQMPGVDIAVLRIALFEILYDAAADKAPVKAVINEAVELAK-HFGSD 125

Query: 119 HFAKLVNSILRR 130
           +  + VN +L  
Sbjct: 126 NSGRFVNGVLST 137


>gi|325114541|emb|CBZ50097.1| gk24670, related [Neospora caninum Liverpool]
          Length = 620

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 42/240 (17%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT------------------ 256
           L    +   +  D +++             +LDLCAAPGGK+                  
Sbjct: 282 LETLEKEKVYYLDGASAFAACTLRVSPGDRILDLCAAPGGKSLVLASMLFSSTSSPPVSG 341

Query: 257 ------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK------ 304
                  Q       +   + S+ R+E+L+  L            +              
Sbjct: 342 SVPPSQKQKSRDAGLLVCNEASRPRMERLQKVLHTFLPPEIFNKRLVQVTCASGTKGGSY 401

Query: 305 ---KLFDAVLVDAPCSST-GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              + FD +LVDAPCSS    +++    L +  +      A  Q +LL   +  ++ GG+
Sbjct: 402 ERFRPFDKILVDAPCSSDRHLLKQGRSALASWASGVPKTHAERQLQLLKGALGLLRVGGV 461

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITPD 418
           +++S C+L + ++E+VV+K+L+S    V+ +PL       +D     S  G+ R  + P 
Sbjct: 462 LLYSTCALSEVENEKVVEKLLKSCGGSVKEIPL------LVDPVRPASASGFSRVAVLPH 515


>gi|171779279|ref|ZP_02920250.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282335|gb|EDT47762.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 142

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 5/134 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFL 60
            S  + R  +   L  +      L         D       +      +  +V       
Sbjct: 7   NSRRDLRERAFQALFSLEFGGEYLQAAEFAYTYDKTVEEDEEVQVPVFLLNLVKGVCDLQ 66

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
             +D  ++  L    SL R   + + LLR+ + ++ Y  +      V+  +E AK+   +
Sbjct: 67  SELDQQIEAHLKSGWSLERLTLTDKALLRLGLYEVKYFEETPGRVAVNEIIEIAKKY-SD 125

Query: 118 RHFAKLVNSILRRV 131
              AK VN +L + 
Sbjct: 126 ETSAKFVNGLLSQF 139


>gi|329850578|ref|ZP_08265423.1| transcription antitermination factor NusB [Asticcacaulis
           biprosthecum C19]
 gi|328840893|gb|EGF90464.1| transcription antitermination factor NusB [Asticcacaulis
           biprosthecum C19]
          Length = 173

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTLRFLP 61
           ARLV    L  +      +  ++                L+Q D+          +R   
Sbjct: 36  ARLVLVQALYQMEITGTGVETVVREFADHRFDTDLEGEPLAQADEAFFGEGARAVVREQG 95

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            ID ++   L     L R   +++ +LR    ++ +  D+    V++  VE A+     
Sbjct: 96  VIDPLITHRLASGWRLERLDTTVRAILRAGTWELKFRPDIGLEVVINEYVEIARAFFGE 154


>gi|308234826|ref|ZP_07665563.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14018]
 gi|311114640|ref|YP_003985861.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14019]
 gi|310946134|gb|ADP38838.1| transcription antitermination factor NusB [Gardnerella vaginalis
           ATCC 14019]
          Length = 176

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  + + L     K  ++  LL+    +   +            I+       
Sbjct: 1   MA-RSTARKRALNTLYEADEKNQNILSLLEERLKEPGAQTPLPD---YAVDIIRGVGERR 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            RID  L+       + R     + +LR++V +IL  D V D   +D A+  AK   ++ 
Sbjct: 57  NRIDKTLNRYSTGWKVGRMAVIDRNILRIAVWEILLNDEVPDKVAIDEAISLAKMYSDDD 116

Query: 119 HFA 121
             A
Sbjct: 117 AIA 119


>gi|316973969|gb|EFV57510.1| putative methyltransferase NSUN6 [Trichinella spiralis]
          Length = 336

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 26/176 (14%)

Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270
            L G  E   + Q+  + I   +        +LDLCAAPGGKT  +       A+V A+D
Sbjct: 175 KLYGIVEDWGFPQNLPSIICTHVLNPQPGEVILDLCAAPGGKTTHIATLTKDQARVVAVD 234

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
              +RL++L+ N  +L+L + +    DA      +       +       T         
Sbjct: 235 DCSKRLQELKENAKKLNLKSIEPNLADAVKLVGMRKGIIKSFNIENKLEITFSDKVP--- 291

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
                                +  +KPGG +V+S C+L+K ++E +V   L   P 
Sbjct: 292 --------------------AVRLLKPGGTLVYSTCTLNKDENEGIVLWALEEFPE 327


>gi|50914880|ref|YP_060852.1| transcription antitermination protein NusB [Streptococcus pyogenes
           MGAS10394]
 gi|50903954|gb|AAT87669.1| N utilization substance protein B [Streptococcus pyogenes
           MGAS10394]
          Length = 156

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 13  NSRRDLRERAFQALFNIETGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 68

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 69  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 128

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 129 KY-SDETSAKFINGLLSQY 146


>gi|306826738|ref|ZP_07460040.1| transcription antitermination factor NusB [Streptococcus pyogenes
           ATCC 10782]
 gi|68052494|sp|Q5XA94|NUSB_STRP6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|304431027|gb|EFM34034.1| transcription antitermination factor NusB [Streptococcus pyogenes
           ATCC 10782]
          Length = 150

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 7   NSRRDLRERAFQALFNIETGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E AK
Sbjct: 63  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 123 KY-SDETSAKFINGLLSQY 140


>gi|322373691|ref|ZP_08048227.1| transcription antitermination factor NusB [Streptococcus sp. C150]
 gi|321278733|gb|EFX55802.1| transcription antitermination factor NusB [Streptococcus sp. C150]
          Length = 144

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           S  + R  +   L  +      L         D      ++ D    + ++V      L 
Sbjct: 8   SRRDLRERAFQTLFALEFGGEVLEQAHFAYTFDKPIGEETEVDVPAFLLSLVTGVREELA 67

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D+ ++  L    SL R   + + LLR+ + +I  + +      ++  +E AK+   + 
Sbjct: 68  QLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIEIAKKY-SDE 126

Query: 119 HFAKLVNSILRRV 131
             AK +N +L + 
Sbjct: 127 TSAKFINGVLSQF 139


>gi|121602835|ref|YP_988938.1| transcription antitermination protein NusB [Bartonella
           bacilliformis KC583]
 gi|120615012|gb|ABM45613.1| transcription antitermination factor NusB [Bartonella bacilliformis
           KC583]
          Length = 154

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +             + +        D    RAI+   
Sbjct: 12  NKRGAARLAAVQALYQMDIVGTGVMETAAEYEAYRLGKEIDGDQYLDADFQWFRAIIAGV 71

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +R   ++D +L   L    SL R    L+ +LR  + +++   +V    +++  V+ AK 
Sbjct: 72  VRDQKKLDPMLHQQLSEEWSLSRLDSILRAILRAGLWELINRKEVPVAVIINEYVDIAKA 131

Query: 114 DKENRHFAKLVNSILRR 130
                   KLVN++L  
Sbjct: 132 FF-EDGEPKLVNAVLDN 147


>gi|304316761|ref|YP_003851906.1| NusB antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778263|gb|ADL68822.1| NusB antitermination factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 140

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR     LL      +     +L+  +  +      + ++  +       +  +  
Sbjct: 2   NRTQAREWLVKLLYQFDVSKSEPPDILNRFFESND----PEEEKDYIEKTFYGIVENVNN 57

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID  +   L +  + R       ++R S  +ILY  D+ +   ++ AVE AK+    +  
Sbjct: 58  IDDRIKKYLKNWDINRIAKIDLAIIRCSFYEILYCDDIPNSVSINEAVEIAKKYSTEKSP 117

Query: 121 A 121
           +
Sbjct: 118 S 118


>gi|221065986|ref|ZP_03542091.1| NusB antitermination factor [Comamonas testosteroni KF-1]
 gi|220711009|gb|EED66377.1| NusB antitermination factor [Comamonas testosteroni KF-1]
          Length = 178

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +   L   +  R     +LD++          + D +   A++   +    
Sbjct: 33  SNRSRAREFALQGLYQHIVGR---NAVLDIDRFTRDLAGFHKADVVHYDALLRGCVENEV 89

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +DA++   L   L          + + V +     DV    V++  +E AK        
Sbjct: 90  SLDALITPKLDRGLTEISPIEHACMWIGVYEFQNCPDVPWRVVLNECIELAKEFGGTDGH 149

Query: 121 A 121
            
Sbjct: 150 K 150


>gi|325981170|ref|YP_004293572.1| NusB antitermination factor [Nitrosomonas sp. AL212]
 gi|325530689|gb|ADZ25410.1| NusB antitermination factor [Nitrosomonas sp. AL212]
          Length = 166

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR      +        +   +         FR + ++       ++   L+ +  ++ +
Sbjct: 26  AREFVLQGIYQWRTAGGTTNFIEQQLRESEEFRHVDEK---HFTHVLQGALQQVDELEKI 82

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +   L  SL         +L +S  ++++  ++   A+++ A+E A+    +    K VN
Sbjct: 83  IRPCLDRSLDELSPVEFAILLLSTFELIHHPEIPYRAILNEAIELARTYGGSDG-HKYVN 141

Query: 126 SILRR 130
            +L +
Sbjct: 142 GVLDK 146


>gi|78357481|ref|YP_388930.1| transcription antitermination factor NusB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|119390767|sp|Q30YL1|NUSB_DESDG RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78219886|gb|ABB39235.1| transcription antitermination factor NusB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 154

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 47/127 (37%), Gaps = 13/127 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVN 54
            S  ++R ++  +L  +         L   +  ++        D+            ++ 
Sbjct: 8   SSRRSSRALAFQVLYGLNFS--PAKDL--AQLQEAYCASPDVSDRGGEAHPVGFAWELIE 63

Query: 55  VTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAK 112
            T      +D ++     +  + R       +LR++V ++LY  DV     ++  +E +K
Sbjct: 64  GTWTNQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSK 123

Query: 113 RDKENRH 119
           +  +++ 
Sbjct: 124 QFGDDKS 130


>gi|145349809|ref|XP_001419320.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579551|gb|ABO97613.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 265

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%)

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            VL D PCS  GTIR+  D L              Q  +  +    +KPGG +V+S C+ 
Sbjct: 97  HVLADVPCSGDGTIRKDADALVRWHPGIGNALHSTQLAVARRCAQLLKPGGSMVYSTCTF 156

Query: 369 DKQDSEEVVQKVL 381
           +  + E VVQ +L
Sbjct: 157 NPIEDEAVVQTLL 169


>gi|283784235|ref|YP_003364100.1| N utilization substance protein B [Citrobacter rodentium ICC168]
 gi|282947689|emb|CBG87244.1| N utilization substance protein B [Citrobacter rodentium ICC168]
          Length = 139

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVMYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|260804499|ref|XP_002597125.1| hypothetical protein BRAFLDRAFT_279290 [Branchiostoma floridae]
 gi|229282388|gb|EEN53137.1| hypothetical protein BRAFLDRAFT_279290 [Branchiostoma floridae]
          Length = 380

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 26/238 (10%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKL 279
           ++  DA++ +PV      +   VLD+CA PGGKT  ++ +      + A +    RL++L
Sbjct: 149 YYAMDAASVLPVLALNLNSGDIVLDMCAGPGGKTLAILNTSVSLSGIIANEPKSSRLKRL 208

Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCS---STGTIRRHPDV 328
              L         + +           +        D VLVD PC+    + T     ++
Sbjct: 209 NQVLRLYLQRGLSVQKGVKVTSFDGCRWGKVSANSFDRVLVDVPCTTDRHSLTHDEKTNI 268

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIP 387
                  +  +    Q KLL   ++ V+PGG VV+S C++ +  +E VV   +   +   
Sbjct: 269 FHVARARERTELTDLQVKLLSSALAAVRPGGEVVYSTCTMSQMQNEGVVYMAMEHANQNS 328

Query: 388 VELVPLNSAYWKSIDMAMALS-PEGWI---RITPDMLEKIDGVSSGMDGFFAVALRRL 441
             L  +              +  EG      + P +              +   LRR+
Sbjct: 329 NILAEVADVSGLVQFFRNTFTFSEGCRIGALVLPSLPNNWGP-------MYFCRLRRI 379


>gi|227327507|ref|ZP_03831531.1| transcription antitermination protein NusB [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 139

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E+   + + +   D    R ++        ++D ++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDITYFRELLAGVATQAEKLDQLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   +       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRQIEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAK-IFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|291300632|ref|YP_003511910.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728]
 gi|290569852|gb|ADD42817.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728]
          Length = 147

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 3/122 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR  +  +L    ++   +  +L+     +               +V+    +L  
Sbjct: 11  ARRKARKRAVDVLYEAEQRDEPIRRVLEDRRKLAVTDPQMPGIPEYTFELVDGVAEYLDE 70

Query: 63  IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           +D V+   L S   L R     + +LRV+  ++ Y  DV     +  AV+ A+       
Sbjct: 71  VDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAEVLCGEDS 130

Query: 120 FA 121
            A
Sbjct: 131 PA 132


>gi|189499470|ref|YP_001958940.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1]
 gi|238692264|sp|B3EM81|NUSB_CHLPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189494911|gb|ACE03459.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1]
          Length = 168

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 5/137 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +      +                S   +   + ++      
Sbjct: 1   MKTYRRRIREKIIQALYTIELTGADMDSA-SDWLITPQIAEDSGAVR-FYKQVLQSIQDH 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ID  +        + R     + +LR+++A++LY  D+     ++ A+E AK+    
Sbjct: 59  KEEIDGYITKHTFNWDMSRIAIIDKNILRMALAELLYFEDIPPKVSINEAIEIAKKFNST 118

Query: 118 RHFAKLVNSILRRVSRE 134
              +K VN IL     +
Sbjct: 119 DKSSKFVNGILDATYND 135


>gi|193787651|dbj|BAG52857.1| unnamed protein product [Homo sapiens]
          Length = 117

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 14/114 (12%)

Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
               +   A FQ++ L   ++F  ++    +V+S CSL ++++E++V   L+ +P    L
Sbjct: 15  SPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVPDALQQNPGAFRL 71

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            P   A      ++     E  +R +P              GFF   + R+  P
Sbjct: 72  APALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 116


>gi|294786532|ref|ZP_06751786.1| transcription antitermination factor NusB [Parascardovia
           denticolens F0305]
 gi|315226110|ref|ZP_07867898.1| transcription antitermination factor NusB [Parascardovia
           denticolens DSM 10105]
 gi|294485365|gb|EFG32999.1| transcription antitermination factor NusB [Parascardovia
           denticolens F0305]
 gi|315120242|gb|EFT83374.1| transcription antitermination factor NusB [Parascardovia
           denticolens DSM 10105]
          Length = 209

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR  + + L     K   +  LLD        +          + IV        
Sbjct: 3   RARTTARKRALNTLYEADEKGEEIVDLLDERLAYPGAQTPLP---PYAQEIVRGVASHRR 59

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +D  L+       + R     + + R++  +I+Y  DV     +D A+  AK   ++ 
Sbjct: 60  TVDKALEEHSEGWDVKRMHVLDRNIARMAAWEIIYNDDVPAKVAIDEALTLAKAYSDDE 118


>gi|187477080|ref|YP_785104.1| transcription antitermination protein NusB [Bordetella avium 197N]
 gi|115421666|emb|CAJ48176.1| N utilization substance protein B [Bordetella avium 197N]
          Length = 156

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 2/115 (1%)

Query: 9   LVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
             +   +   + R         +++         S+ D    + +++  LR  P +    
Sbjct: 16  EFALQGVYAWLLRGGQDTQDAGEIDAHLRDAEDFSEADAQWFKTLLHGVLREAPTLREHF 75

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
              +   L         +L +   ++++  +V     ++ AVE AK       F 
Sbjct: 76  TPYIDRPLAELSPVEHGILLIGSYELVHHVEVPYKVAINEAVELAKSFGGTDGFK 130


>gi|319405757|emb|CBI79380.1| N utilization substance protein B [Bartonella sp. AR 15-3]
          Length = 156

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +    I +  ++         + +        D    R+IV   
Sbjct: 14  NKRGAARLAAVQALYQMDIVGIGVREVIAEYKAYRLGKDIDGSQYLDADFQWFRSIVVGV 73

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           ++   ++D +L   L    +L R   +L+ +LR  + +++   DV    +++  V+ AK 
Sbjct: 74  VKDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKDVPVAVIMNEYVDIAKA 133

Query: 114 DKENRHFAKLVNSILRRVSREKIE 137
                +  +LVN++L  +++E  +
Sbjct: 134 FF-ESNEPRLVNAVLDSIAKEMCQ 156


>gi|296101538|ref|YP_003611684.1| transcription antitermination protein NusB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055997|gb|ADF60735.1| transcription antitermination protein NusB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 139

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   + + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSQ---NDIADVEYQFLSEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRLLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + +      
Sbjct: 127 LDKAAPAIRPH 137


>gi|255323400|ref|ZP_05364531.1| transcription antitermination factor NusB [Campylobacter showae
           RM3277]
 gi|255299437|gb|EET78723.1| transcription antitermination factor NusB [Campylobacter showae
           RM3277]
          Length = 131

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 6/130 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL        S     +        + +    + L  ++ +  L   
Sbjct: 1   MATRHQVRQAVVSLLYAREMGSCSE----EFVEEFLEEKKIRNDQRSLALSLFHGILEHE 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +DA+L+  L    +       + +LR+   ++ +       +++  +E  K       
Sbjct: 57  DELDALLNARLKEWKINEIGSIERAVLRLGAYEMKFTPTDKAVIINEGIELGKE-LGGDS 115

Query: 120 FAKLVNSILR 129
             K +N +L 
Sbjct: 116 APKFINGVLD 125


>gi|189485423|ref|YP_001956364.1| transcription antitermination factor NusB [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|170287382|dbj|BAG13903.1| transcription antitermination factor NusB [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 142

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR  S H+L  V    + +  + +     + +    +  ++    +        
Sbjct: 1   MGTRRKARECSLHMLYAVDNCNVPIESIYNSF---AVYFPKGEAYRMFALDLFKGVCDNK 57

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             +D+++     +  + R     + ++R++  +I+   ++    ++D AVE +K+    +
Sbjct: 58  EDLDSLIKQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISKKY-STK 116

Query: 119 HFAKLVNSILRR 130
             +K VN IL +
Sbjct: 117 DSSKFVNGILDK 128


>gi|94968243|ref|YP_590291.1| NusB antitermination factor [Candidatus Koribacter versatilis
           Ellin345]
 gi|119372272|sp|Q1ISD3|NUSB_ACIBL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94550293|gb|ABF40217.1| NusB antitermination factor [Candidatus Koribacter versatilis
           Ellin345]
          Length = 146

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   +R ++  +L  +   + S   +    + +     L +  +     + +V  +    
Sbjct: 7   TRRKSRELALQMLFQMDMGKQSADHVEKTFWAERK--DLEEEVRSFAIDLFHVAEKRSEE 64

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRH 119
           ID +++       + R     + +LR + A+ + +       V++ ++E A+R      
Sbjct: 65  IDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPES 123


>gi|15639999|ref|NP_219452.1| transcription antitermination protein NusB [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026238|ref|YP_001934010.1| transcription antitermination protein NusB [Treponema pallidum
           subsp. pallidum SS14]
 gi|7387973|sp|O83979|NUSB_TREPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238689355|sp|B2S4Q2|NUSB_TREPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|3323342|gb|AAC65965.1| N utilization substance protein B (nusB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018813|gb|ACD71431.1| N utilization substance protein B [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060372|gb|ADD73107.1| transcription antitermination factor NusB [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 141

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR+++   L       I+    L            S +D    R +   TL  L  ID  
Sbjct: 13  ARILAFQALFAWDAAGITPET-LTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREIDGC 71

Query: 67  LDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +   L      R     + +LR+S   +L+  D+    V+  AV  A RD       + V
Sbjct: 72  VSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIA-RDFGTDDSFRFV 130

Query: 125 NSILRR 130
           N +L  
Sbjct: 131 NGVLDN 136


>gi|301059426|ref|ZP_07200347.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300446462|gb|EFK10306.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 1011

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L  +          L+     S    +++      R +V+   +    +D V+   
Sbjct: 2   ALQVLFHLEYSD---DDPLEACRLISENFEMAEASVAFSRDLVSGVCQRKTILDRVIGRS 58

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                L R     + +LR++  ++LYL D+     +D AVE  KR   +    + +N +L
Sbjct: 59  SKHWRLERMARLDRSILRLATYEMLYLEDIPPRVSLDEAVELGKRF-GSEDSGRYINGVL 117

Query: 129 RRVSR 133
             +  
Sbjct: 118 DNIFN 122


>gi|332219865|ref|XP_003259078.1| PREDICTED: putative methyltransferase NSUN4 [Nomascus leucogenys]
          Length = 384

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 98/268 (36%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMDYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSTSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTADRHSLHEEENNIFKRSRKKERQMLPVLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        + V++  L       +D      S +    
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSMQVQVEDLTHFRRLFMDTFCFFSSCQVGEL 363

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++     V       +   +RRL 
Sbjct: 364 VIPNLMANFGPV-------YFCKMRRLT 384


>gi|329119641|ref|ZP_08248322.1| transcription antitermination factor NusB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464238|gb|EGF10542.1| transcription antitermination factor NusB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 142

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L        S   +       S +    + D  L  A+      
Sbjct: 1   MKTSPRRRAREFAVQALYQCALNGASAVQVAQNIREASDY---PRADGELFTALFFGAHD 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
                   +  +L           + +L ++  ++  + +     +++ A+E  K     
Sbjct: 58  NGGEYMQRIRPLLDRDEKDINPVERAILLMACHELAAMPETPYPVIINEAIEVTKTYGGT 117

Query: 118 RHFAKLVNSILRR 130
               K VN IL R
Sbjct: 118 DS-HKFVNGILDR 129


>gi|329744628|ref|NP_001178310.1| putative methyltransferase NSUN4 [Bos taurus]
 gi|297473231|ref|XP_002686463.1| PREDICTED: NOP2/Sun domain family, member 4 [Bos taurus]
 gi|148887182|sp|Q0V8R7|NSUN4_BOVIN RecName: Full=Putative methyltransferase NSUN4; AltName:
           Full=NOL1/NOP2/Sun domain family member 4
 gi|296488956|gb|DAA31069.1| NOP2/Sun domain family, member 4 [Bos taurus]
          Length = 384

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 105/301 (34%), Gaps = 29/301 (9%)

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG-- 221
             L   D     ++       + +T A    +                +   P    G  
Sbjct: 91  EQLKARDFVNEAVFHREPEPENSQTAAPSPASWACSPNLRCFTFTRGDVSRFPPARLGSL 150

Query: 222 ---VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRL 276
               +++ DA++ +PV   G     +VLDLCAAPGGKT  L+ +G    + A D+S  R 
Sbjct: 151 GLMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRT 210

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHP 326
            +L+  L                     + +        D VLVD PC++          
Sbjct: 211 SRLQRVLHSYVPQDVRDKNRVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEEN 270

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---- 382
            +       +       Q +LL  G+   KPGG +V+S CSL    +E VVQ  +     
Sbjct: 271 SIFQRSRKKERQMLPVLQVQLLAAGLLATKPGGHIVYSTCSLSHLQNEYVVQGAIELLDN 330

Query: 383 SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              I V++  L       ++  +   S +    + P+++             +   + R+
Sbjct: 331 QYSIKVQVEDLTHFRKLFMNTFSFFPSCQVGELVIPNLMANFGP-------MYFCKMCRM 383

Query: 442 I 442
            
Sbjct: 384 T 384


>gi|294887533|ref|XP_002772153.1| ribosomal RNA small subunit methyltransferase B, putative
           [Perkinsus marinus ATCC 50983]
 gi|239876099|gb|EER03969.1| ribosomal RNA small subunit methyltransferase B, putative
           [Perkinsus marinus ATCC 50983]
          Length = 402

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 99/320 (30%), Gaps = 71/320 (22%)

Query: 188 TWAHKLNAVMLPTGG-IRLKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNN 242
            W   L A                 +  L  +  G  +  D S++  V       G    
Sbjct: 85  EWLEPLTAARFGPSPKFYSIPTATQMSRLNLYKGGRLFGLDVSSASAVFALLGESGPEAG 144

Query: 243 LSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            +VLDLC APG K      +  G++V  +DVS+ RL   R  L +   +  ++   D   
Sbjct: 145 SAVLDLCCAPGTKLLMLSELCPGSRVAGIDVSRDRLMVCRSLLTKYGAHNVELYHGDGRY 204

Query: 301 YCPKKL-----------------------------------FDAVLVDAPCSSTGTIRRH 325
            C + +                                   +D VL DA C+  G+++  
Sbjct: 205 VCSRPMERLTVAKRKSRGRKRQRRGSPEDPPPSSTTLEAESWDLVLCDAECTHDGSVKHM 264

Query: 326 PDV--------------LWTRDTDDIVKSA--------CFQRKLLLQGISFVKPGGIVVF 363
                               +                   QR L+      +KPGG +V+
Sbjct: 265 LKHLEASSRDSSGVVGFWQQQSERSHPMPWLDNLDELESLQRALITAAFDALKPGGCMVY 324

Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPDML 420
           S CS+ ++  E +V+ +L        L PL     K    A  +   G     R  P   
Sbjct: 325 STCSMARRQDENIVEYLLV-HKDAAALCPLPFELAKMPCRATMMDNTGAACACRFDPADA 383

Query: 421 EKIDGVSSGMDGFFAVALRR 440
           +     +    G F   +R+
Sbjct: 384 DVARVDAG---GLFIARIRK 400


>gi|227113444|ref|ZP_03827100.1| transcription antitermination protein NusB [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 139

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E+   + + +   D    R ++        ++D ++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDITYFRELLAGVATQAEKLDQLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   +       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRQIEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAK-IFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|89067938|ref|ZP_01155382.1| transcription antitermination factor NusB [Oceanicola granulosus
           HTCC2516]
 gi|89046536|gb|EAR52592.1| transcription antitermination factor NusB [Oceanicola granulosus
           HTCC2516]
          Length = 156

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVT 56
           K    +RL +   L  +   + S+  ++                +++ D    RA+    
Sbjct: 11  KMRSASRLYAVQALFQMEAAQQSVDRVMAEFEDHRFGASYEEGEMAEGDLETFRALCETA 70

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
           +    +ID + D  L     + R   +L+ L R + A+ +  D     V+   V+ A+  
Sbjct: 71  VDNQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFIRRDTPPKVVITEFVDIARAF 130

Query: 115 KENRHFAKLVNSILRRV 131
                    VN++L  +
Sbjct: 131 FPEGREPSFVNAVLDHM 147


>gi|281413741|ref|ZP_06245483.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
           2665]
          Length = 125

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             +L    ++  +++  +      +  ++         + +V   +    R+D  L    
Sbjct: 1   MEILFEAEQRGSTVSEGIRTRRESTDLQVN-----AYTQRLVEGVIADQERLDEALSSYS 55

Query: 72  I-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
              SL R     + +LRV   ++L+  DV D   +  AV  A          + VN +L 
Sbjct: 56  RGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALA-AQLSTDDSPEFVNGLLG 114

Query: 130 RVSR 133
           R+ +
Sbjct: 115 RLQQ 118


>gi|239905097|ref|YP_002951836.1| N utilization substance protein B homolog [Desulfovibrio magneticus
           RS-1]
 gi|239794961|dbj|BAH73950.1| N utilization substance protein B homolog [Desulfovibrio magneticus
           RS-1]
          Length = 159

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI---LVRAIVNVTLRF 59
           S   AR  +   L  +  +  +    L   +      +    D         +V    R 
Sbjct: 12  SRRKARKQAFEFLYGLSFEPAADERSLLRLFKRCPHDVAEGEDDAGHEFAWELVLGVWRN 71

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
              IDA +     +  + R       +LR++V +IL   D+     ++ A+E +KR   +
Sbjct: 72  QRDIDATIVRFSKNWKISRIAKVELTILRLAVHEILSRPDIPLRVSLNEAIELSKRY-GD 130

Query: 118 RHFAKLVNSILR 129
            +    +N IL 
Sbjct: 131 ENSRNFINGILD 142


>gi|114556344|ref|XP_001161301.1| PREDICTED: fatty acid amide hydrolase isoform 2 [Pan troglodytes]
          Length = 849

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 92/240 (38%), Gaps = 19/240 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            VV+S CSL    +E VVQ    L ++   ++   L+S    ++ +   +       ++P
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQNPDLDSEALLALPLPQLVQKLHSRELSP 363


>gi|253687422|ref|YP_003016612.1| NusB antitermination factor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259514866|sp|C6DB34|NUSB_PECCP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|251754000|gb|ACT12076.1| NusB antitermination factor [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 139

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+E+   + + +   D    R ++        ++D ++ 
Sbjct: 11  ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDITYFRELLAGVATQAEKLDQLMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   +       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PFLSRQIEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|110331769|gb|ABG66990.1| NOL1/NOP2/Sun domain family 4 protein [Bos taurus]
          Length = 375

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 105/301 (34%), Gaps = 29/301 (9%)

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG-- 221
             L   D     ++       + +T A    +                +   P    G  
Sbjct: 82  EQLKARDFVNEAVFHREPEPENSQTAAPSPASWACSPNLRCFTFTRGDVSRFPPARLGSL 141

Query: 222 ---VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRL 276
               +++ DA++ +PV   G     +VLDLCAAPGGKT  L+ +G    + A D+S  R 
Sbjct: 142 GLMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRT 201

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHP 326
            +L+  L                     + +        D VLVD PC++          
Sbjct: 202 SRLQRVLHSYVPQDVRDKNRVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEEN 261

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---- 382
            +       +       Q +LL  G+   KPGG +V+S CSL    +E VVQ  +     
Sbjct: 262 SIFQRSRKKERQMLPVLQVQLLAAGLLATKPGGHIVYSTCSLSHLQNEYVVQGAIELLDN 321

Query: 383 SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              I V++  L       ++  +   S +    + P+++             +   + R+
Sbjct: 322 QYSIKVQVEDLTHFRKLFMNTFSFFPSCQVGELVIPNLMANFGP-------MYFCKMCRM 374

Query: 442 I 442
            
Sbjct: 375 T 375


>gi|315043808|ref|XP_003171280.1| hypothetical protein MGYG_07281 [Arthroderma gypseum CBS 118893]
 gi|311345069|gb|EFR04272.1| hypothetical protein MGYG_07281 [Arthroderma gypseum CBS 118893]
          Length = 532

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 78/481 (16%), Positives = 141/481 (29%), Gaps = 99/481 (20%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106
             + A++    ++   I  V+D   I +   K   +  LL V    +    +A  +  + 
Sbjct: 34  AQIYALIVEVAKYNECITEVIDSAGILAHEPKLTPILSLLLVYDFLLSKRGIAAPS--NH 91

Query: 107 AVEQAKRDKENRHFAKLVN-----SILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161
            +  A    ++R  A+L           +   ++  L  + A  +  P W   R+ N   
Sbjct: 92  PLRLAVERHKSRINAELTKLRIRRGCASKEELKQKLLQDKQATETFSPRWI--RINNALT 149

Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221
           +      S          L+   +      K   +      +        I S P + EG
Sbjct: 150 RLDREMGSTFAGYGPVSSLSELAEATADEKKKYYLDEHIPDLLAISRDIDITSSPAYKEG 209

Query: 222 VWWVQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTAL 269
              +QD ++  P  L         +  ++D CAAPG KT                ++ +L
Sbjct: 210 RLILQDKASCFPAYLLLGDHPEQWDGDLIDGCAAPGNKTTHLASLLSSTARKQKKRIFSL 269

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------VDAPCSSTGTIR 323
           D S+ R + L+  + +        +                       +D  CS +G  +
Sbjct: 270 DASRSRSKILQTMVKKAGADDMVTVMPGQDFLALDPTDTRFQHVTALLLDPSCSGSGITK 329

Query: 324 RHPD----------------------VLWTRDTDDI-----------------------V 338
           R                         V   +   +                         
Sbjct: 330 REDVPQLSLPKSKSELASTTTSGCKGVKNRKRKRETPVDASSTANPPTTGEKEDGSERLA 389

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPL 393
           K A  Q +++    SF      V +S CS+ ++++E+VV +VL     +     +EL   
Sbjct: 390 KLANLQSQIVEHAFSFPAAT-RVTYSTCSIHQEENEDVVARVLASSVSQRRGWRLELRSE 448

Query: 394 NSAYWKSIDMAMALSP--------------EGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            +   +       LS               E  IR  P           G  GFF     
Sbjct: 449 QARGLQKWHHRGILSGDSLESLPLLSSDQVEACIRCWP-------AGDEGTGGFFVAIFV 501

Query: 440 R 440
           R
Sbjct: 502 R 502


>gi|239993724|ref|ZP_04714248.1| transcription antitermination protein NusB [Alteromonas macleodii
           ATCC 27126]
          Length = 140

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  +   AR ++   +      ++S   +  +E   +    + + D    +A++     
Sbjct: 1   MKVSARRKARELALQGVYSW---QMSHNDIQQVELALATSNDMQKVDMAYFQALLRGVAH 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
              ++D  +   L           + +LR++  ++   +DV    +++ A+E AK     
Sbjct: 58  NASKLDTTIKPYLGRLPEELDAIEKAILRIATLELTERIDVPYRVIINEAIELAKAF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K +N  L +
Sbjct: 117 EESHKFINGALDK 129


>gi|220931474|ref|YP_002508382.1| NusB antitermination factor [Halothermothrix orenii H 168]
 gi|259514846|sp|B8D2G0|NUSB_HALOH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219992784|gb|ACL69387.1| NusB antitermination factor [Halothermothrix orenii H 168]
          Length = 134

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK +    R+ +  +L  +                +  ++ +  + +     IV   +  
Sbjct: 1   MKITRHQERVWALQILYSLDISSELNIQKARKTCREFKYKKVLDKKRYYFEDIVEGVINS 60

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              +D++++   +   + R     + +LR+++ +I    +     +D AVE AK D  + 
Sbjct: 61  RQDLDSIINKYAIDWDVERMACIDRNILRIALYEI-ESGLPVGVAIDEAVEIAK-DFGDS 118

Query: 119 HFAKLVNSILRR 130
           +  K +N IL +
Sbjct: 119 NSPKFINGILAK 130


>gi|167949504|ref|ZP_02536578.1| transcription antitermination protein NusB [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 182

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 2  KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
          K    AR  +   +         L  + +   G+   + LSQ +    + +++     L 
Sbjct: 3  KKRSQARRHAVQAIYQWQMAGQDLAAIYEQFLGE---QDLSQFEVPYFKDLLHGVPNNLQ 59

Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVA 91
           +D +L   L  ++       + +LR+ V 
Sbjct: 60 ELDGLLKPALDRAIESVDPVERAVLRLGVY 89


>gi|90023094|ref|YP_528921.1| transcription antitermination protein NusB [Saccharophagus
           degradans 2-40]
 gi|119390816|sp|Q21F20|NUSB_SACD2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89952694|gb|ABD82709.1| N utilization substance protein B [Saccharophagus degradans 2-40]
          Length = 150

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 1   MKSGMNAR----LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK    AR      +   L        +L  +    + D+    +S+ D      I++  
Sbjct: 1   MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHTDN---DMSKVDVEYFHEILHGV 57

Query: 57  LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRD 114
                 +D      L    L         +LR +  +    +DV    V++ AV  AK+ 
Sbjct: 58  AAIKSTLDETFKPFLTGLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAKKF 117

Query: 115 KENRHFAKLVNSILRR 130
                  K +N +L +
Sbjct: 118 -GAADSHKFINGVLDK 132


>gi|21674526|ref|NP_662591.1| N utilization substance protein B [Chlorobium tepidum TLS]
 gi|28201843|sp|Q8KBS4|NUSB_CHLTE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21647719|gb|AAM72933.1| N utilization substance protein B [Chlorobium tepidum TLS]
          Length = 164

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 5/138 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +  + +      +                     ++   +R 
Sbjct: 1   MKTYRRQLREKIIQALYTLELRDVDTDSAANWLLTKEIMD--DPNAMKFFNHLMQSIVRN 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +        + R     + +LR+++A+ILY  D+     ++ A+E AK+    
Sbjct: 59  REEIDRYIAKHTFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFSST 118

Query: 118 RHFAKLVNSILRRVSREK 135
              +K VN IL  +  + 
Sbjct: 119 DKSSKFVNGILDAIFNDM 136


>gi|218549924|ref|YP_002383715.1| transcription antitermination protein NusB [Escherichia fergusonii
           ATCC 35469]
 gi|226738904|sp|B7LMH1|NUSB_ESCF3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218357465|emb|CAQ90104.1| transcription antitermination protein [Escherichia fergusonii ATCC
           35469]
 gi|324114635|gb|EGC08603.1| transcription antitermination protein NusB [Escherichia fergusonii
           B253]
 gi|325498301|gb|EGC96160.1| transcription antitermination protein NusB [Escherichia fergusonii
           ECD227]
          Length = 139

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      R     + D+EY   A + +   D +  R ++         +D ++ 
Sbjct: 11  ECAVQALYSWQLSR---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|114556346|ref|XP_513142.2| PREDICTED: fatty acid amide hydrolase isoform 3 [Pan troglodytes]
          Length = 833

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 92/240 (38%), Gaps = 19/240 (7%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          I   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417
            VV+S CSL    +E VVQ    L ++   ++   L+S    ++ +   +       ++P
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQNPDLDSEALLALPLPQLVQKLHSRELSP 363


>gi|323488925|ref|ZP_08094162.1| N utilization substance protein B-like protein (NusB-like protein)
           [Planococcus donghaensis MPA1U2]
 gi|323397317|gb|EGA90126.1| N utilization substance protein B-like protein (NusB-like protein)
           [Planococcus donghaensis MPA1U2]
          Length = 129

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +   L  +    +++   +D                     +V  T   +
Sbjct: 1   MK-RHEAREKALQTLFQLEGTELTINEAMDHVMAGENDN--------FYDLLVQGTYTNM 51

Query: 61  PRIDA-VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  ++D +   S+ R     + +LR+++ ++ Y+ D     V++ A+E  K    + 
Sbjct: 52  ATIDEKLVDHLENWSIERLPKIERTILRMAIFELEYMEDAPARVVMNEAIELCKTF-GDD 110

Query: 119 HFAKLVNSILRRVSR 133
             ++ VN +L + + 
Sbjct: 111 KSSRFVNGVLSKFTD 125


>gi|145615605|ref|XP_360347.2| hypothetical protein MGG_05721 [Magnaporthe oryzae 70-15]
 gi|145022415|gb|EDK06435.1| hypothetical protein MGG_05721 [Magnaporthe oryzae 70-15]
          Length = 557

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSI 401
           Q  LL   + F      + +S CS+  +++E VV + L+ +P    ++         +  
Sbjct: 421 QATLLEHAMKF-PSAKRITYSTCSIHAEENEGVVLRTLKRNPGWRIMKREEQVDGMQRWP 479

Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   EG   I    +    G   G+ GFF  A  R
Sbjct: 480 VRGEVQFCEGDKEIAEGCIRAYKGDGHGVMGFFVAAFVR 518


>gi|296170770|ref|ZP_06852342.1| N utilization substance protein B [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894585|gb|EFG74322.1| N utilization substance protein B [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 168

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 2/122 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR  +  LL     + +    ++D+    +A        Q    A          
Sbjct: 9   KGRHQARKRAVDLLFEAEARGLGPAEVVDVRATLAAANPDVAPLQPYTVAAARGVGEHAA 68

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            ID ++   L   +L R     + +LRV+V ++LY  DV +   VD AV+ AK    +  
Sbjct: 69  HIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELSTDES 128

Query: 120 FA 121
            A
Sbjct: 129 PA 130


>gi|320547470|ref|ZP_08041756.1| transcription antitermination factor NusB [Streptococcus equinus
           ATCC 9812]
 gi|320447815|gb|EFW88572.1| transcription antitermination factor NusB [Streptococcus equinus
           ATCC 9812]
          Length = 142

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 5/134 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFL 60
            S  + R  +   L  +   R  L         D              +  +V       
Sbjct: 7   NSRRDLRERAFQALFSLEFDREYLAAAEFAYTYDKTIEEDEDVQVPVFLLNLVKGVCDMQ 66

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
             +D  ++  L    SL R   + + LLR+ + ++ Y  +      V+  +E AK+   +
Sbjct: 67  AELDQQIEAHLKAGWSLERLTLTDKSLLRLGLYEVRYFEETPGRVAVNEIIEIAKKY-SD 125

Query: 118 RHFAKLVNSILRRV 131
              AK VN +L + 
Sbjct: 126 ETSAKFVNGLLSQF 139


>gi|325069060|ref|ZP_08127733.1| Fmu (Sun) domain protein [Actinomyces oris K20]
          Length = 101

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSSPIPVELVPLNSAY 397
           A  QR+LL   +  V+ GG+V +  CS    ++  VV+   ++L    +  E +      
Sbjct: 5   AELQRELLASALRAVRRGGVVTYVTCSPHALETTLVVRDVTRLLEREGLHTEPLHAGDVA 64

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +      A S    +++ P +         G D  F   LRR
Sbjct: 65  TRLAPHPPAGSDREALQLWPHL--------DGTDAMFCALLRR 99


>gi|313680543|ref|YP_004058282.1| nusb antitermination factor [Oceanithermus profundus DSM 14977]
 gi|313153258|gb|ADR37109.1| NusB antitermination factor [Oceanithermus profundus DSM 14977]
          Length = 142

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+    AR ++  +L   ++  + L               L +  +   R +V    R  
Sbjct: 1   MRRR--ARELAFKVLFEHLQGDVPLEEA---WRHALEGEELDEEGRAFARRLVEGFARRA 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D +L   +      +   +   +LR++  ++LY D     ++++AV+ A +      
Sbjct: 56  AEVDRILAETVEGWDFGQMSKTDLAVLRLATYEMLYEDTPFAPLIEVAVKIAGKYGGEDS 115


>gi|225849626|ref|YP_002729860.1| transcription antitermination protein NusB [Persephonella marina
           EX-H1]
 gi|254772650|sp|C0QT45|NUSB_PERMH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225645609|gb|ACO03795.1| transcription antitermination factor NusB [Persephonella marina
           EX-H1]
          Length = 142

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 3/137 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR +    L     K   L  +++    D   + LS++    + +I+      LP
Sbjct: 3   KYRKKAREIVFRTLYTYDIKGGDLFEIMEDHIKDIRGK-LSKKTVDYIYSILKGIDEHLP 61

Query: 62  RIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKRDKENRH 119
            ID +L   L +  L R  Y  + LLR+ V ++L+ D+ D   V    ++  K   +N  
Sbjct: 62  EIDDILRENLKNWRLERLGYPERALLRLGVYELLFSDIEDKGRVFMDILDLTKCYIDNPD 121

Query: 120 FAKLVNSILRRVSREKI 136
             K +N +L  V + + 
Sbjct: 122 TVKFINGVLSTVYKNRQ 138


>gi|146310545|ref|YP_001175619.1| transcription antitermination protein NusB [Enterobacter sp. 638]
 gi|166918808|sp|A4W788|NUSB_ENT38 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145317421|gb|ABP59568.1| NusB antitermination factor [Enterobacter sp. 638]
          Length = 139

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRLLEELGQVEKAVLRIALFELAKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|291279490|ref|YP_003496325.1| N utilization substance protein B [Deferribacter desulfuricans
           SSM1]
 gi|290754192|dbj|BAI80569.1| N utilization substance protein B [Deferribacter desulfuricans
           SSM1]
          Length = 139

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 56/138 (40%), Gaps = 5/138 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    AR  +  +L            L+   +     +  +++ ++L   +  + +   
Sbjct: 1   MKLKSIAREKAFKMLYQAEMTNFKPDRLIKQFWELDEEK--NEKVKLLANKLFRLVIDKK 58

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              D ++   L    +  R   +++  LR+ +A++   +   YA++D     AK+ + + 
Sbjct: 59  GYADDIISKYLKEGWTFERLTETVKNTLRLGIAELFNTETPVYAILDEYTTLAKKYE-DE 117

Query: 119 HFAKLVNSILRRVSREKI 136
             A  VN +L ++ ++  
Sbjct: 118 KAASFVNGVLEKIRKDFN 135


>gi|298369791|ref|ZP_06981107.1| transcription antitermination factor NusB [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281251|gb|EFI22740.1| transcription antitermination factor NusB [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 142

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 6/132 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR ++   L       I            + F    + D+ L   +V  T   
Sbjct: 1   MKTPRRRARELAVQALYQAAVNNIPAAEAAKNIREMAEF---GKADEGLFNKLVIGTADN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L ++  ++  + +     +++ A+E  K      
Sbjct: 58  AAAYMQQIRPLLDRDEKDLSPIERAVLLMACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFAKLVNSILRR 130
              K VN IL R
Sbjct: 118 G-HKFVNGILDR 128


>gi|114767590|ref|ZP_01446325.1| transcription antitermination factor NusB [Pelagibaca bermudensis
           HTCC2601]
 gi|114540368|gb|EAU43457.1| transcription antitermination factor NusB [Roseovarius sp.
           HTCC2601]
          Length = 163

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVN 54
           MKS   +RL +   L  +    +++  +            + +       D  L   I +
Sbjct: 18  MKS--ASRLYAVQALYQMEAGDVAVEKVQREFVDYRFGAEIDEGVEMVEGDVTLFGKITS 75

Query: 55  VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             + +  +ID + D  L     + R   +L+ L R + A+++  D     V+   VE A 
Sbjct: 76  SAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVDSDTPPKVVISEYVEVAS 135

Query: 113 RDKENRHFAKLVNSILRRV 131
                    + VN++L  +
Sbjct: 136 AFFPEGREPRFVNAVLDHM 154


>gi|260553344|ref|ZP_05825958.1| transcription termination factor [Acinetobacter sp. RUH2624]
 gi|260405181|gb|EEW98679.1| transcription termination factor [Acinetobacter sp. RUH2624]
          Length = 149

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +         +  +      ++A   +   D      ++   +     +DA+L  V
Sbjct: 19  AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLSYYHELLTQVIAQHEDLDALLIPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   +          LR+   ++  +L++    V+D A+E AK         K +N +L 
Sbjct: 76  LDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|85858025|ref|YP_460227.1| transcription termination factor NusB [Syntrophus aciditrophicus
           SB]
 gi|119390838|sp|Q2LQK4|NUSB_SYNAS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|85721116|gb|ABC76059.1| transcription termination factor NusB [Syntrophus aciditrophicus
           SB]
          Length = 161

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+    AR ++  +L  +    +     ++L +      + +   +     ++    +  
Sbjct: 12  MRQRRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAPMDA---RPFSSLLIEGAWKHR 68

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            +ID+++     + S+ R     + +LR++V ++ +  D+     ++ A++  K    + 
Sbjct: 69  DQIDSLIGGCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLGK-VYGSE 127

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISI 147
           +    +N IL  +  +  +          
Sbjct: 128 NSGSFINGILDALYAKIHKKNDEQEIAPP 156


>gi|167770740|ref|ZP_02442793.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM
           17241]
 gi|167667335|gb|EDS11465.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM
           17241]
          Length = 161

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    +R  +  L+     K  S+  +++        ++           + +     L
Sbjct: 1   MK-RSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD-----YAYRLASDVCGNL 54

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
           P +D  +        + R       +LR+S+ +I ++D V   A ++ AVE AK+   + 
Sbjct: 55  PWLDEAIASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDD 114

Query: 119 HFA 121
            F+
Sbjct: 115 DFS 117


>gi|115397347|ref|XP_001214265.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192456|gb|EAU34156.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 538

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 25/147 (17%)

Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
            VD P     +   +       D + + K +  Q +++   + F      V +S CS+  
Sbjct: 379 TVDPPAVQDVSQAENELASSHLDPERLTKLSNLQTRIVEHALGFPAAT-RVTYSTCSIHL 437

Query: 371 QDSEEVVQKVLRSS--------PIPVELVPLNSAYWKSIDMA---------MALSPEGWI 413
            ++E VV++VL S          +  E  P     WK   +               +G +
Sbjct: 438 IENEAVVERVLASEVARRRGWRVMRREEQPEGLRKWKHRGVRSEGELTVDLSDEQLDGCL 497

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           R  P           G  GFF     R
Sbjct: 498 RCWPGD-------DEGTGGFFVAGFVR 517


>gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162]
 gi|296028422|gb|ADG79192.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162]
          Length = 165

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   AR  +  LL  V  + ++ +  LL      +A              +V        
Sbjct: 15  ARHRARKRAVDLLFEVEARGVTDVDGLLAERRTLAADDASVPPVSEYTAQLVTGVDVDRE 74

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           ++D+V+   L   +L R     + +LRV+V ++    DV    VVD AVE AK    +  
Sbjct: 75  QLDSVITSHLTGWTLARLPAVDRAILRVAVWELFNAPDVPPAVVVDEAVELAKELSTDES 134

Query: 120 FA 121
            +
Sbjct: 135 PS 136


>gi|225573684|ref|ZP_03782439.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038977|gb|EEG49223.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM
           10507]
          Length = 145

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYG--DSAFRLLSQRDQILVRAIVNVTLRFLP 61
               R     LL      + +    +  +     +    L + D+  ++      +  L 
Sbjct: 13  RSKIREHIFKLLF---MSQFNTEEEMPQQLTIYFNELEELDESDRAYMQEKYEQVISHLK 69

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            ID +L+ +       R        LR+SV ++ Y  ++     ++ AVE AKR      
Sbjct: 70  EIDELLNQLSKGWKTSRMARVDLTALRLSVYELKYEEEIPTKVSINEAVELAKRFGGEDS 129

Query: 120 FA 121
           FA
Sbjct: 130 FA 131


>gi|149693676|ref|XP_001495117.1| PREDICTED: similar to Putative methyltransferase NSUN4
           (NOL1/NOP2/Sun domain family member 4) [Equus caballus]
          Length = 384

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 107/310 (34%), Gaps = 29/310 (9%)

Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214
             ++   +   L+  D     +          +T      ++               +  
Sbjct: 82  AWDHVSAELEQLSARDFVNEAISHREREPESGQTAVPSPASLACSPNLRCFTFPRGDVSR 141

Query: 215 LPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VT 267
            P    G      +++ DA++ +PV   G     +VLDLCAAPGGKT  L+ +G    + 
Sbjct: 142 FPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQTGCCRNLA 201

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST 319
           A D+S  R  +L+  L                     + +        D VLVD PC+  
Sbjct: 202 ANDLSTSRTGRLQKVLHSYVPQDIRERNRVRVTSWDGRKWGELEGDTYDRVLVDVPCTVD 261

Query: 320 --GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
                    ++       +       Q +LL  G+   KPGG VV+S CSL    +E VV
Sbjct: 262 RHSLHEEENNIFQRSRKKERQMLPMLQMQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV 321

Query: 378 Q---KVLR-SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           Q   + L     I V++  L       +D      S +    + P+++            
Sbjct: 322 QGTVEFLANQYSIHVQVEDLTHFRKLFMDTFFFFPSCQVGELVIPNLMANFGP------- 374

Query: 433 FFAVALRRLI 442
            +   + RL 
Sbjct: 375 MYFCKMCRLT 384


>gi|331701511|ref|YP_004398470.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
 gi|329128854|gb|AEB73407.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
          Length = 137

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R ++   L  +     +             +          +  +++  L     
Sbjct: 4   TRHQIREIAFQTLFALNTNDQTDWKDFFQVLTSGKYGDDYPE---YLHQLISGVLEHKSE 60

Query: 63  IDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           ID  ++  L    SL R   +   +L +++ +++Y  D+     ++ A+E AK+  ++R 
Sbjct: 61  IDHTIEKYLASSWSLERIARTDLIILEIAIYEMVYVDDMPAKVSINEAIELAKKFSDDRS 120

Query: 120 FA 121
             
Sbjct: 121 RK 122


>gi|238755140|ref|ZP_04616487.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473]
 gi|238706700|gb|EEP99070.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473]
          Length = 138

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   +      +     + D+E    + + +   D    R +++     +  +DA + 
Sbjct: 11  ECAVQAIYSWQLSK---NDIADVELQFLSEQDVKDVDITYFRELLSGVAVNVTALDASMA 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAILRLAIFELSKRDDVPYKVAINEAIELAK-IFGAEDSHKFVNGV 126

Query: 128 LRR 130
           L +
Sbjct: 127 LDK 129


>gi|78776604|ref|YP_392919.1| transcription antitermination protein NusB [Sulfurimonas
           denitrificans DSM 1251]
 gi|119390845|sp|Q30TJ7|NUSB_SULDN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78497144|gb|ABB43684.1| NusB antitermination factor [Sulfurimonas denitrificans DSM 1251]
          Length = 132

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR+    LL        ++    D    +   R    + +     +    +  +
Sbjct: 1   MATRHQARMAVVSLLYAFDLGNGNIAEHTDEILEEKKIRN---KQKDFALTLYEGVMANI 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D  +   L      R     +  LR++  +IL+ ++    V++ AVE  K       
Sbjct: 58  TPVDEAIVKHLKDWDFERLGAIERATLRLATYEILFGELDSAVVINEAVEITKAF-GTEQ 116

Query: 120 FAKLVNSILR 129
             K +N +L 
Sbjct: 117 SPKFINGVLD 126


>gi|15675648|ref|NP_269822.1| transcription antitermination protein NusB [Streptococcus pyogenes
           M1 GAS]
 gi|22095965|sp|Q99Y88|NUSB_STRP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|13622860|gb|AAK34543.1| putative transcriptional terminator [Streptococcus pyogenes M1 GAS]
          Length = 150

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55
            S  + R  +   L  +         LL        +  ++  D         + ++V  
Sbjct: 7   NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62

Query: 56  TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112
                  +D ++   L    SL R   + + LLR+ + +I Y D   D   ++  +E  K
Sbjct: 63  VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEVVK 122

Query: 113 RDKENRHFAKLVNSILRRV 131
           +   +   AK +N +L + 
Sbjct: 123 KY-SDETSAKFINGLLSQY 140


>gi|291525244|emb|CBK90831.1| transcription antitermination factor NusB [Eubacterium rectale DSM
           17629]
 gi|291529297|emb|CBK94883.1| transcription antitermination factor NusB [Eubacterium rectale
           M104/1]
          Length = 131

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R     +L  V     S      +E  +      +  ++  +    +  +  +  
Sbjct: 2   TRSKIRENVFKMLFRVEFHDKS-ELAEQMELLNDELTNPTDEEKQYIDEKCSAIIEHMAE 60

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +DA++D         R       ++R++V +I +  D+     ++ AVE AK+   +   
Sbjct: 61  LDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESG 120

Query: 121 A 121
           A
Sbjct: 121 A 121


>gi|119474641|ref|ZP_01614994.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2143]
 gi|119450844|gb|EAW32077.1| transcription antitermination protein NusB [marine gamma
           proteobacterium HTCC2143]
          Length = 158

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 5/147 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR      L      + ++  +      D  F  +   D      IV+     L 
Sbjct: 14  AARRKARHYGMQALYQWQMTKYAVKDIELQFLADYDFSQV---DVEYFHDIVHHVPANLE 70

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
            ++A     L  ++         LLR+   +++  +D+    V++ AV  AK+       
Sbjct: 71  ELEAAFTPYLDRAMGDLDPIELSLLRLGSYELIKRIDIPYKVVINEAVSLAKKFGATDG- 129

Query: 121 AKLVNSILRRVSREKIELLQRIAGISI 147
            K +N +L +++ +   +  +      
Sbjct: 130 HKYINGVLDKLAAQVRTIEIKAQQHYQ 156


>gi|75764701|ref|ZP_00744117.1| N utilization substance protein B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487809|gb|EAO51609.1| N utilization substance protein B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 107

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 10/111 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK    AR  +   L  +           ++    +             + ++V   +  
Sbjct: 1   MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVEN 53

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAV 108
              ID  +   L    L R     + +LRV+V ++ Y+ ++     ++   
Sbjct: 54  KEAIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINETN 104


>gi|331091280|ref|ZP_08340121.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404727|gb|EGG84266.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 132

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               R     +L  +       ++  ++L   +     LS++D+  +       +  +  
Sbjct: 3   RTELRQHIFKILFLIEFNGRDEMSEQIELYLDN--LEELSEKDRAYIENKYRSVVEKVEE 60

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID +L+         R       +LR++  ++ +  DV     ++ AVE AK+       
Sbjct: 61  IDELLNANATGWKTARMNKVDLTILRLATYELKWDEDVPVGVAINEAVELAKKYSSEEGP 120

Query: 121 A 121
           +
Sbjct: 121 S 121


>gi|301768192|ref|XP_002919509.1| PREDICTED: putative methyltransferase NSUN4-like [Ailuropoda
           melanoleuca]
          Length = 384

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 98/261 (37%), Gaps = 29/261 (11%)

Query: 204 RLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
                   +   P    G      +++ DA++ +PV   G     +VLDLCAAPGGKT  
Sbjct: 131 CFTFARGDVSRFPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLA 190

Query: 259 LIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------D 308
           L+ +G    + A D+S  R  +L+  L                     + +        D
Sbjct: 191 LLQTGCCRNLAANDLSTSRTGRLQRVLHSYVPQDIRDRNRVRVTSWDGRKWGELEGDTYD 250

Query: 309 AVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
            VLVD PC++          +V       +       Q +LL  G+   KPGG VV+S C
Sbjct: 251 RVLVDVPCTTDRHSLHEEENNVFQRSRKKERQMLPMLQMQLLAAGLLATKPGGHVVYSTC 310

Query: 367 SLDKQDSEEVVQ---KVLR-SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLE 421
           SL    +E VVQ   + L     I V++  L+      +D  +   S      + P++L 
Sbjct: 311 SLSHLQNEYVVQGTIEFLANQYSIKVQVEDLSHFRKLFMDTFSFFPSCLVGELVIPNLLA 370

Query: 422 KIDGVSSGMDGFFAVALRRLI 442
                       +   + RL 
Sbjct: 371 NFGP-------MYFCKMCRLT 384


>gi|311742352|ref|ZP_07716161.1| transcription antitermination factor NusB [Aeromicrobium marinum
           DSM 15272]
 gi|311313980|gb|EFQ83888.1| transcription antitermination factor NusB [Aeromicrobium marinum
           DSM 15272]
          Length = 136

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 7/123 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R  +  +L     + +     L      +   +           +V       
Sbjct: 1   MGARTKYRKRALDVLFESELQGLEAGGSLTERLVTNEPPINP-----YTVTLVEGVAGTR 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            RIDA++       +L R     + LLR+ + +ILY  DV D   V  AV  A+    + 
Sbjct: 56  DRIDAIISEHAHGWTLDRMPAVDRNLLRLGIYEILYVDDVPDAVAVSEAVSLAQELSTDE 115

Query: 119 HFA 121
             +
Sbjct: 116 SAS 118


>gi|221053941|ref|XP_002261718.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193808178|emb|CAQ38881.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 507

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            + + K + FQ+K+L   +  ++     V+S CS  ++++E+VV+ VL+S+P        
Sbjct: 395 QEKVDKLSQFQKKILNHALDTLRIADTFVYSTCSFFEEENEQVVESVLKSNPGICLEKAG 454

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              +  S     ++     +R  P++            G F    RR
Sbjct: 455 KEKFLFSR--GRSVVSSQCVRTFPELHACR--------GIFVSKFRR 491


>gi|332992370|gb|AEF02425.1| transcription antitermination protein NusB [Alteromonas sp. SN2]
          Length = 140

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  +   AR ++   +      ++S   +  +E   +    + + D    +A++     
Sbjct: 1   MKVSARRKARELALQGIYSW---QMSHNDIQQIELALATSNDMKKVDMAYFQALLRGVAH 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
               +D  +   L           + +LR++  ++    DV    +++ A+E AK     
Sbjct: 58  SASHLDTTIKPYLGRLPEELDAIEKAILRIATLELTERKDVPYRVIINEAIELAKSF-GA 116

Query: 118 RHFAKLVNSILRR 130
               K +N  L +
Sbjct: 117 EESHKFINGALDK 129


>gi|315499922|ref|YP_004088725.1| nusb antitermination factor [Asticcacaulis excentricus CB 48]
 gi|315417934|gb|ADU14574.1| NusB antitermination factor [Asticcacaulis excentricus CB 48]
          Length = 177

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 13/127 (10%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDS----------AFRLLSQRDQILVRAIVNVT 56
           ARLV    L  +      +  ++                   + L   D+      +   
Sbjct: 36  ARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEAFFADGLRTI 95

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
           ++    ID ++   L     L R   +L+ +LR    ++ +  DVA   V++  VE AK 
Sbjct: 96  VKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVINEYVEIAKA 155

Query: 114 DKENRHF 120
              N   
Sbjct: 156 FFGNEEA 162


>gi|109004030|ref|XP_001108301.1| PREDICTED: putative methyltransferase NSUN4-like isoform 4 [Macaca
           mulatta]
          Length = 384

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 96/268 (35%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          +   P    G      +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFARGDVSRFPPARPGSLGVMDYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + A D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSTSRIARLQNILHSYVPQEIRDGNRVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQMQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S +    
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRLFMDTFCFFSSCQVGEL 363

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P+++             +   + RL 
Sbjct: 364 VIPNLMANFGP-------MYFCKMHRLT 384


>gi|283783379|ref|YP_003374133.1| transcription antitermination factor NusB [Gardnerella vaginalis
           409-05]
 gi|298252678|ref|ZP_06976472.1| transcription termination factor [Gardnerella vaginalis 5-1]
 gi|283441142|gb|ADB13608.1| transcription antitermination factor NusB [Gardnerella vaginalis
           409-05]
 gi|297533042|gb|EFH71926.1| transcription termination factor [Gardnerella vaginalis 5-1]
          Length = 160

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  + + L     K   +  LL+    +   +            IV        RID  
Sbjct: 6   ARKRALNTLYEADEKNQHILSLLEERVKEPGAQTPLPE---YAVEIVRGVGERRNRIDKT 62

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           L+       + R     + +LR++V ++L  D + D   +D A+  AK   ++   A
Sbjct: 63  LNRYSTGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAKMYSDDEAIA 119


>gi|302809573|ref|XP_002986479.1| hypothetical protein SELMODRAFT_425439 [Selaginella moellendorffii]
 gi|300145662|gb|EFJ12336.1| hypothetical protein SELMODRAFT_425439 [Selaginella moellendorffii]
          Length = 266

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 30/229 (13%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRL 276
             +++ DA++ +  +         VLDLCAAPGGKT  ++       A + A + S  R 
Sbjct: 52  FDYYLMDAASVLVTEALDLEMGDKVLDLCAAPGGKTLGILQQLDLLQASLVANEPSPTRS 111

Query: 277 EKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
           ++L   +             +   +   +    L+D VLVD+PCSS   +   P  L T 
Sbjct: 112 KRLSKVISEYVPENLRTSIRVTRRNGIKWTEYDLYDKVLVDSPCSSERHLLHDPKELGTW 171

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                   A  Q  LL   +   K  G +V+S CSL + +++ V+               
Sbjct: 172 TPRRTENCAKRQLALLFAALRAAKLYGRIVYSTCSLSQLENDSVIS-------------- 217

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            N    + +   +    E    + PD+ +    +       +   L++L
Sbjct: 218 -NVGALRPLQWPVGEKTEHGRIVLPDVSQGWGPI-------YIAVLKKL 258


>gi|300172801|ref|YP_003771966.1| N utilization substance protein B [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887179|emb|CBL91147.1| N utilization substance protein B homolog [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 138

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M   +   +R  +  +L  + +   S  +  L D+      +     R       +VN  
Sbjct: 1   MSNLTRHESRQAAFQVLFALEKDPKSNNIDKLYDIVLEGKDYDDYLPR-------LVNGV 53

Query: 57  LRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
           L     +D  +   L +   + R   +   +LR+++ ++L   V     +D A+   K  
Sbjct: 54  LGTKSELDEQITAHLANGWAINRINKADLIILRLAIYELLNNLVPYKVAIDEALILTKTF 113

Query: 115 KENRHFAKLVNSILRRVSR 133
             +    K VN +L+  + 
Sbjct: 114 -SDEESRKFVNGLLKNFTP 131


>gi|114319541|ref|YP_741224.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
 gi|119372274|sp|Q0ABQ3|NUSB_ALHEH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114225935|gb|ABI55734.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
          Length = 178

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
            +  +   +    D  Y       L   D+   RA+++     L  +D  L+ +L   L 
Sbjct: 47  EIDPEEPPVEAGDDEHYPRYPHDGL---DRPYFRALLHGVPARLNDLDQALEPLLDRPLR 103

Query: 77  RKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                 + LLR+   ++   +D     +++ AV  AKR        + +N +L +
Sbjct: 104 TLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRF-GAEQSHRYINGVLDK 157


>gi|71909351|ref|YP_286938.1| NusB antitermination factor [Dechloromonas aromatica RCB]
 gi|119390763|sp|Q479L3|NUSB_DECAR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71848972|gb|AAZ48468.1| NusB antitermination factor [Dechloromonas aromatica RCB]
          Length = 163

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR      L               +E         ++ D+      +   +    
Sbjct: 20  SARRRAREFVLQGLYQWRVGG--ADEA-SIEAYAPEMEGFAKADREFFVGTLRGVISQQE 76

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120
           ++   +   +             +L +   ++L + +     +++ A+E  K        
Sbjct: 77  KLIEQVSTHIDRPFNELSPVEACILMLGSFEMLNHAETPYRVIINEAIELTKAFGGTDG- 135

Query: 121 AKLVNSILRR 130
            K VN +L +
Sbjct: 136 HKYVNGVLDK 145


>gi|18310806|ref|NP_562740.1| transcription antitermination protein NusB [Clostridium perfringens
           str. 13]
 gi|110801167|ref|YP_696507.1| transcription antitermination protein NusB [Clostridium perfringens
           ATCC 13124]
 gi|168206122|ref|ZP_02632127.1| N utilization substance protein B [Clostridium perfringens E str.
           JGS1987]
 gi|168210813|ref|ZP_02636438.1| N utilization substance protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214398|ref|ZP_02640023.1| N utilization substance protein B [Clostridium perfringens CPE str.
           F4969]
 gi|169343548|ref|ZP_02864547.1| N utilization substance protein B [Clostridium perfringens C str.
           JGS1495]
 gi|182625668|ref|ZP_02953437.1| N utilization substance protein B [Clostridium perfringens D str.
           JGS1721]
 gi|22095945|sp|Q8XJD6|NUSB_CLOPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119390759|sp|Q0TPD3|NUSB_CLOP1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|18145487|dbj|BAB81530.1| probable N utilization substance protein B [Clostridium perfringens
           str. 13]
 gi|110675814|gb|ABG84801.1| N utilization substance protein B [Clostridium perfringens ATCC
           13124]
 gi|169298108|gb|EDS80198.1| N utilization substance protein B [Clostridium perfringens C str.
           JGS1495]
 gi|170662434|gb|EDT15117.1| N utilization substance protein B [Clostridium perfringens E str.
           JGS1987]
 gi|170711117|gb|EDT23299.1| N utilization substance protein B [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714129|gb|EDT26311.1| N utilization substance protein B [Clostridium perfringens CPE str.
           F4969]
 gi|177909070|gb|EDT71545.1| N utilization substance protein B [Clostridium perfringens D str.
           JGS1721]
          Length = 135

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 54/136 (39%), Gaps = 4/136 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + + +R     L   +     +     +    +         D   +++ +        +
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISK-DDLDLAYIKSGLLGIEENKEK 60

Query: 63  IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +D++++  ++   L R       +LR+S  +IL+  DV     ++ A+E  K+  +N+  
Sbjct: 61  LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120

Query: 121 AKLVNSILRRVSREKI 136
           +  +N +L +V +   
Sbjct: 121 S-FINGVLDKVYKNMQ 135


>gi|261365604|ref|ZP_05978487.1| transcription antitermination factor NusB [Neisseria mucosa ATCC
           25996]
 gi|288565933|gb|EFC87493.1| transcription antitermination factor NusB [Neisseria mucosa ATCC
           25996]
          Length = 143

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 6/132 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR ++   L        +   +         F    + D+ L   +   T   
Sbjct: 1   MKTPRRRARELAVQALYQAGINNTAAPEIAKNIQDQPDFA---KADEELFNKLFFGTHTH 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L ++  ++  + +     +++ A+E  K      
Sbjct: 58  AAEYIQQIRPLLDRDEKDLSPIERAVLLMACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFAKLVNSILRR 130
              K VN IL +
Sbjct: 118 G-HKFVNGILDK 128


>gi|262042439|ref|ZP_06015599.1| transcription termination/antitermination factor NusB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040214|gb|EEW41325.1| transcription termination/antitermination factor NusB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 139

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L         +  +      +   + +   D +  R +++        +D ++ 
Sbjct: 11  ECAVQALYSWQLSHNDIADVEYQFLAEQDVKYV---DVLYFRELLSGVATNSAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
             L   L       + +LR+++ ++    DV     ++ A+E AK         K VN +
Sbjct: 68  PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126

Query: 128 LRRVSREKIEL 138
           L + +      
Sbjct: 127 LDKAAPVIRPH 137


>gi|210633860|ref|ZP_03297875.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279]
 gi|210159029|gb|EEA90000.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279]
          Length = 216

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  +L     +  S+  +L  ++  S   L           I         RI
Sbjct: 10  RTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD-----YAIQIARGVDANRERI 64

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL--DV-ADYAVVDLAVEQAKRDKENRH 119
           D+ L  V  + SL R   + + LLR +V ++ +   D      V++ AVE AK       
Sbjct: 65  DSALRAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAY-GTDD 123

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
            A  VN +L R+ RE+     +    ++  +  +      
Sbjct: 124 SAGFVNGVLGRIVRERHLPSLQHVACTVTADDCEAACVAA 163


>gi|220904887|ref|YP_002480199.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254772632|sp|B8J194|NUSB_DESDA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219869186|gb|ACL49521.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 164

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 15/143 (10%)

Query: 1   MKSGMNA-----RLVSSHLLSCV-MRKRISLTCLLDLE------YGDSAFRLLSQRDQIL 48
           M  G NA     R ++  +L  +      SL  L             S    +       
Sbjct: 1   MAKGKNATRRGERELAFQVLYGLSFTPARSLEELRRSFRMSPDNLARSEESGVPVEACGF 60

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDL 106
              +V         +D  +     +  + R       LLR++  ++++  DV     ++ 
Sbjct: 61  SWELVEGVWSNSSALDETISRFSHNWRVDRMGRVELTLLRLAAYELVFRADVPPKVAINE 120

Query: 107 AVEQAKRDKENRHFAKLVNSILR 129
           A+E +++     +    +N IL 
Sbjct: 121 ALELSRQF-GEGNAKNFINGILD 142


>gi|303327268|ref|ZP_07357710.1| transcription antitermination factor NusB [Desulfovibrio sp.
           3_1_syn3]
 gi|302863256|gb|EFL86188.1| transcription antitermination factor NusB [Desulfovibrio sp.
           3_1_syn3]
          Length = 163

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 20/145 (13%)

Query: 1   MKSGMN-----ARLVSSHLLS---------CVMRKRISLTCLLDLEYGDSAFRLLSQRDQ 46
           M    N     AR ++  +L              +R     +L         + L     
Sbjct: 1   MSKAKNTTRRGARELAFQVLYGLSFTPAESRADLRRAF---VLSPHNTAMDEQDLGSEPT 57

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVV 104
                +V         +D  +     +  + R       LLR++V ++LY  DV     +
Sbjct: 58  GFAWELVEGVWGNSAALDTAISRFSHNWRVDRMGRIELTLLRLAVFEMLYRQDVPPKVAI 117

Query: 105 DLAVEQAKRDKENRHFAKLVNSILR 129
           + A+E + +     +    VN IL 
Sbjct: 118 NEALELSGQF-GEDNAKNFVNGILD 141


>gi|125539198|gb|EAY85593.1| hypothetical protein OsI_06967 [Oryza sativa Indica Group]
          Length = 394

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIV------- 338
            L   D I   A D      +D VLVDA C+  G+I+       W   T D         
Sbjct: 241 GLRKCDAIRPSADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERT 300

Query: 339 -KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q +LL  G   +K GG +V+S CSL    +E VVQ+ L            ++  
Sbjct: 301 DDLLHLQLRLLTNGFKLLKTGGSLVYSTCSLTVAQNENVVQQFLCKHSSAELQKIDSADS 360

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           W     ++  +    +R  P         +S   G F     +L
Sbjct: 361 WPCRGGSIFKT----LRFDP--------ATSQTSGLFVAKFTKL 392


>gi|42527164|ref|NP_972262.1| transcription antitermination protein NusB [Treponema denticola
           ATCC 35405]
 gi|81570229|sp|Q73M53|NUSB_TREDE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|41817588|gb|AAS12173.1| N utilization substance protein B [Treponema denticola ATCC 35405]
          Length = 136

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 3/116 (2%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R+++   L         L  LL+  + +           +  + +V  T+  +  ID V+
Sbjct: 9   RILAFQALVAWDVGGAVLDDLLNFSWQNEDSIK-DPNGYLFPKMMVLGTIENITEIDKVI 67

Query: 68  DFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
              L +  + R     + +LR+SV  ++Y  D     V+D A+  AK    +  + 
Sbjct: 68  QENLDNWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAINLAKDFGTDDSYK 123


>gi|330993560|ref|ZP_08317495.1| N utilization substance protein B-like protein [Gluconacetobacter
           sp. SXCC-1]
 gi|329759590|gb|EGG76099.1| N utilization substance protein B-like protein [Gluconacetobacter
           sp. SXCC-1]
          Length = 177

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 15/157 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----------SAFRLLSQRDQILVR 50
           +S   +R+ +   L  + +   S   +++                 A   +   D  L  
Sbjct: 13  RSRTASRVAAVQALFQIEQAGESPEHVINQFNRHRLGTSVVQDGSYAEGQVPDADARLFG 72

Query: 51  AIVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLA 107
            +V   +    RID +L  +L     L R    L+ ++  +  ++   D V    +++  
Sbjct: 73  IVVRGAVARQERIDGLLHEILPASWPLARLDPVLRAIMHAAGGEMTGADPVPARVIINEY 132

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG 144
           ++ A          +++N +L  +SR   E   + A 
Sbjct: 133 MDIAHGFLAGDE-PRMLNGVLDALSRRLQEPAAQPAM 168


>gi|315222311|ref|ZP_07864217.1| transcription antitermination factor NusB [Streptococcus anginosus
           F0211]
 gi|315188644|gb|EFU22353.1| transcription antitermination factor NusB [Streptococcus anginosus
           F0211]
          Length = 141

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 4/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           +    R  +   L  +  ++  +         D      S  +    +  +V    +   
Sbjct: 8   ARRELRERAFQALMSLEYEKDIVEACRFAYLYDKDMTNDSDVEIPAFLLNLVTGVEQSKN 67

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +D  L   L    +L R     + +LR+ + ++   D      ++ A+E +K+   +  
Sbjct: 68  ELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFDTPQLVAINEAIELSKKF-SDEK 126

Query: 120 FAKLVNSILRRV 131
            +K +N IL + 
Sbjct: 127 SSKFINGILSKF 138


>gi|157163972|ref|YP_001466235.1| transcription antitermination protein NusB [Campylobacter concisus
           13826]
 gi|166215673|sp|A7ZBS7|NUSB_CAMC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|112801548|gb|EAT98892.1| transcription antitermination factor NusB [Campylobacter concisus
           13826]
          Length = 131

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 6/131 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL       ++     D    +   R   + +    +      L   
Sbjct: 1   MATRHQVRQAIVSLLYSNEINPVTA-EFEDEFLEEKKIRNERKNE---AQQTFKEVLANK 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            ++D +L   L      +   +   +LR+ + ++ +       +++ A+E AK    +  
Sbjct: 57  EKLDEILKPHLKDGDFSKVGATELAILRLGLYEMKFSQTDKAVIINEAIELAKE-LGSDQ 115

Query: 120 FAKLVNSILRR 130
             K +N +L +
Sbjct: 116 APKFINGVLDK 126


>gi|118474879|ref|YP_892479.1| transcription antitermination protein NusB [Campylobacter fetus
           subsp. fetus 82-40]
 gi|166215675|sp|A0RQJ6|NUSB_CAMFF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|118414105|gb|ABK82525.1| transcription antitermination factor NusB [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 131

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 12/133 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           M +    R     LL                L+ +   +         +     + N  L
Sbjct: 1   MATRHQVRQSVVSLLYANEMGSEMEEFSNEFLEEKKIRNDQ-------KSFTLTLYNGVL 53

Query: 58  RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
             L  ID  LD  L    L       + +LR+   +I + +     V++ A+  A  +  
Sbjct: 54  DNLNLIDEALDAHLGKWKLGEIGAVERAILRLGAYEIKFTNTQSAIVINEAILLA-NELG 112

Query: 117 NRHFAKLVNSILR 129
           +    + +N +L 
Sbjct: 113 SDSSTRFINGVLD 125


>gi|306825791|ref|ZP_07459130.1| transcription antitermination factor NusB [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432152|gb|EFM35129.1| transcription antitermination factor NusB [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 140

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 8   SRRELRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLTGLVSGVQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK +  ++  
Sbjct: 66  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-NFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|168215452|ref|ZP_02641077.1| N utilization substance protein B [Clostridium perfringens NCTC
           8239]
 gi|182382114|gb|EDT79593.1| N utilization substance protein B [Clostridium perfringens NCTC
           8239]
          Length = 135

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + + +R     L   +     +     +    +         D   +++ +        +
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISK-DDLDLAYIKSGLLGIEENKEK 60

Query: 63  IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +D++++  ++   L R       +LR+S  +IL+  DV     ++ A+E  K+  +N+  
Sbjct: 61  LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120

Query: 121 AKLVNSILRRVSREK 135
           +  +N +L +V +  
Sbjct: 121 S-FINGVLDKVYKNM 134


>gi|255263487|ref|ZP_05342829.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62]
 gi|255105822|gb|EET48496.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62]
          Length = 157

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAF------RLLSQRDQILVRAIVNV 55
           K    ARL ++  L  +     ++  +   E+    F        L++ D    R ++  
Sbjct: 12  KMRSAARLFATQALYQMELSGQTVDAV-RQEFETYRFGEVIDGDELAEGDVETFRDLLEN 70

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +     ID + D  L    ++ R   +L+ L R + A++         V+   V+ A  
Sbjct: 71  AVNHQALIDQMTDRALVAKWAIDRIDPTLRALFRAAGAELTQSSTPPKVVIVEFVDVAVA 130

Query: 114 DKENRHFAKLVNSILRRV 131
                   K VN++L  +
Sbjct: 131 FFPEGKEPKFVNAVLDHM 148


>gi|223933712|ref|ZP_03625687.1| NusB antitermination factor [Streptococcus suis 89/1591]
 gi|253752490|ref|YP_003025631.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis SC84]
 gi|253754316|ref|YP_003027457.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis P1/7]
 gi|253756250|ref|YP_003029390.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis BM407]
 gi|302024430|ref|ZP_07249641.1| transcription antitermination protein NusB [Streptococcus suis
           05HAS68]
 gi|330833433|ref|YP_004402258.1| transcription antitermination protein NusB [Streptococcus suis ST3]
 gi|223897628|gb|EEF64014.1| NusB antitermination factor [Streptococcus suis 89/1591]
 gi|251816779|emb|CAZ52422.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis SC84]
 gi|251818714|emb|CAZ56550.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis BM407]
 gi|251820562|emb|CAR47318.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus suis P1/7]
 gi|319758898|gb|ADV70840.1| transcription antitermination protein NusB [Streptococcus suis
           JS14]
 gi|329307656|gb|AEB82072.1| transcription antitermination protein NusB [Streptococcus suis ST3]
          Length = 139

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 1   MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+  +A R  +   +  +   +  +         D           + +  +VN    +
Sbjct: 1   MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVADY 60

Query: 60  LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKE 116
              +D  L   L    +L R     + ++R+ + +IL + +  D   V+ A+E AK    
Sbjct: 61  RDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEF-S 119

Query: 117 NRHFAKLVNSILRRV 131
           +   AK VN +L + 
Sbjct: 120 DESSAKFVNGVLSQF 134


>gi|325474207|gb|EGC77395.1| N utilization substance protein B [Treponema denticola F0402]
          Length = 136

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 3/116 (2%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R+++   L         L  LL+  + +           +  + +V  T+  +  ID V+
Sbjct: 9   RILAFQALVAWDVGGAVLDDLLNFSWQNENSIK-DPNSYLFPKMMVLGTIENITEIDKVI 67

Query: 68  DFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
              L +  + R     + +LR+SV  ++Y  D     V+D A+  AK    +  + 
Sbjct: 68  QENLDNWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAINLAKDFGTDDSYK 123


>gi|312869983|ref|ZP_07730122.1| transcription antitermination factor NusB [Lactobacillus oris
           PB013-T2-3]
 gi|311094568|gb|EFQ52873.1| transcription antitermination factor NusB [Lactobacillus oris
           PB013-T2-3]
          Length = 136

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M  +    R  +  +L   ++         +         R + +     V+ +      
Sbjct: 1   MSLTRHALREEAFQVLFA-LQTNPDADLATIYQSIPHHDERAIPE----YVQRLATGVSD 55

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
               +D  +  +L    ++ R   +   +LR+++ ++ Y  +V     ++ A+E AK   
Sbjct: 56  RQAALDGQISSLLASDWTIDRLAKADLIILRLALYELQYVEEVPTPVAINEALELAKEFS 115

Query: 116 ENRHFAKLVNSILRRVSREKI 136
            ++     +N  L R  +E  
Sbjct: 116 NDQSRK-FINGALGRFEKENN 135


>gi|256847385|ref|ZP_05552831.1| transcription antitermination factor NusB [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716049|gb|EEU31024.1| transcription antitermination factor NusB [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 137

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 1   MK-SGMNARLVSSHLLSCVM-----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54
           M  S    R+ +   L  ++      K      +L L   ++A + L          +V+
Sbjct: 1   MSFSRHTIRIAAFQTLFALINNPSADKGALYAEVLKLGSKETAPQYLD--------ELVS 52

Query: 55  VTLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQA 111
                   +DA++   L +  ++ R       +LR+++ ++ Y  ++    V++ A+E A
Sbjct: 53  GVQEHQADLDAIISNYLTNNWTIDRLARPNLVILRIALYELQYEKELPAPIVINEALELA 112

Query: 112 KRDKENRHFAKLVNSILRRVSREK 135
           K   +++   + +N +L    +E 
Sbjct: 113 KSFSDDKSR-RFINGVLGHYEKEH 135


>gi|148993974|ref|ZP_01823344.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488122|ref|ZP_02712321.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP195]
 gi|225858284|ref|YP_002739794.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae 70585]
 gi|254772657|sp|C1C5G8|NUSB_STRP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|147927563|gb|EDK78590.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP9-BS68]
 gi|183573223|gb|EDT93751.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP195]
 gi|225721195|gb|ACO17049.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           70585]
 gi|301793671|emb|CBW36056.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae INV104]
 gi|332075276|gb|EGI85746.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA17570]
          Length = 140

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +    ++       Y          +    +  +V+        
Sbjct: 8   SRRQLRKCAFQALMS-LEFGTNVETACRFAYTHDREDT-DVQLPAFLIDLVSGVQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 66  LDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|170017709|ref|YP_001728628.1| transcription termination factor [Leuconostoc citreum KM20]
 gi|169804566|gb|ACA83184.1| Transcription termination factor [Leuconostoc citreum KM20]
          Length = 140

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 3   SGMNARLVSSHLLSCVMR--KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           +   +R  +  +L  + +  +  ++  L D+      F     R       +VN  L   
Sbjct: 5   TRHESRQAAFQILFALEKDPQNNNIDRLYDIVLEGKDFDDYLPR-------LVNGILGNK 57

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +DA +   L    ++ R   +   +LR+++ ++    V     +D A+  AK    + 
Sbjct: 58  IDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQLVPYKVAIDEALILAKTF-ADE 116

Query: 119 HFAKLVNSILRRVSR 133
              K VN +L+  + 
Sbjct: 117 DDRKFVNGVLKNFAP 131


>gi|145630810|ref|ZP_01786588.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
 gi|144983692|gb|EDJ91152.1| transcription antitermination protein NusB [Haemophilus influenzae
           R3021]
          Length = 121

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75
                   +   +   E      + +   D+   R +   T+  +  +D  +   +  + 
Sbjct: 2   YSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIETVDFSISPYIDRAF 58

Query: 76  PRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                    +LR++V ++ + LDV    V++ A+E AK    +    K +N +L +
Sbjct: 59  DELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES-HKYINGVLDK 113


>gi|162147540|ref|YP_001602001.1| N utilization substance protein B-like protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545645|ref|YP_002277874.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786117|emb|CAP55699.1| N utilization substance protein B homolog [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533322|gb|ACI53259.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 183

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 17/164 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-------------SAFRLLSQRDQIL 48
           +S   +R+     L  + +   +   ++                        + + D  L
Sbjct: 15  RSRTASRVAVVQALFQIEQAGDTPDTVIAQFLRHRLGTASGADQGEEYEDGRVPEADIRL 74

Query: 49  VRAIVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
              +    +    +IDA++  VL     + R    L+ LLR + A++     V    +++
Sbjct: 75  FEQVARAAVARREQIDALIVEVLPPSWPVGRLDPVLRALLRAAGAELAATGGVPTRVIIN 134

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIP 149
             ++ A          K+VN +L  ++R           +   P
Sbjct: 135 EYLDIAHGFFSGDE-PKMVNGVLDTLARRLRAADTPADVLPEDP 177


>gi|255066867|ref|ZP_05318722.1| transcription antitermination factor NusB [Neisseria sicca ATCC
           29256]
 gi|255048942|gb|EET44406.1| transcription antitermination factor NusB [Neisseria sicca ATCC
           29256]
          Length = 143

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 6/132 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR ++   L        +   +         F    + D+ L   +   T   
Sbjct: 1   MKTPRRRARELAVQALYQAGINNTAAPEIAKNIQDQPDFA---KADEELFNKLFFGTHTH 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L ++  ++  + +     +++ A+E  K      
Sbjct: 58  AAEYIQQIRPLLDRDEKDLSPIERAVLLMACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFAKLVNSILRR 130
              K VN IL +
Sbjct: 118 G-HKFVNGILDK 128


>gi|255994610|ref|ZP_05427745.1| transcription antitermination factor NusB [Eubacterium saphenum
           ATCC 49989]
 gi|255993323|gb|EEU03412.1| transcription antitermination factor NusB [Eubacterium saphenum
           ATCC 49989]
          Length = 135

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR ++  ++  +   + +   L+D    D        +++  +R + ++    +  
Sbjct: 4   NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIG---KEEAYIREVFSLVTDNIDA 60

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           IDA L+  +   ++         +LR++VA+I Y  D+     V+ AV  AK+  +++  
Sbjct: 61  IDAELNAKMKGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIAKKFSDDKS- 119

Query: 121 AKLVNSILRRVSREK 135
           AK +N IL  + ++ 
Sbjct: 120 AKFINGILANIGKDY 134


>gi|71664085|ref|XP_819027.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884310|gb|EAN97176.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 529

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 103/294 (35%), Gaps = 58/294 (19%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN-------------LSVLDLCAA 251
           +      + + P    G   +QD ++ +P  +                     ++D CAA
Sbjct: 238 VFPAGTDLHAHPAVRSGQLILQDRASCLPACILLDAVEVVRPSSAGAGAPLEYIVDACAA 297

Query: 252 PGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC--PKK 305
           PG KT  L   GA      A++  ++R + L   +  L      +++ +D F      ++
Sbjct: 298 PGNKTTHLAALGAPHVKIMAVERDEKRADLLFRRVQSLGASDYVNVVNLDFFQMSSADRE 357

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS------------------------- 340
             + +L+D  CS++G + R    L  +    + +                          
Sbjct: 358 ATEGILLDPSCSASGVLTRVDVSLMRQRQARVAEVGENNRGEDGAGNNETWAISPEEHGT 417

Query: 341 ------------ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                       A  QRKLL   +        VV+S CS+  +++E VV++VL  + +  
Sbjct: 418 EFASNADRVMGLARLQRKLLAHALLSFDNCRTVVYSTCSVHVEENELVVRQVLEDTRVQA 477

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               L++    +       +      +  D   + D V+   +GF+     R +
Sbjct: 478 RGWALSNIMPTTWKTRGQKTEGDTFPL--DHTIRCDPVADATNGFYVARFDRAV 529


>gi|297243390|ref|ZP_06927323.1| transcription termination factor [Gardnerella vaginalis AMD]
 gi|296888637|gb|EFH27376.1| transcription termination factor [Gardnerella vaginalis AMD]
          Length = 160

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  + + L     K   +  LL+    +   +            IV        RID  
Sbjct: 6   ARKRALNTLYEADEKNQHILSLLEERVKEPGAQTPLPE---YAIEIVRGVGERRNRIDKT 62

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           L+       + R     + +LR++V ++L  D + D   +D A+  AK   ++   A
Sbjct: 63  LNRYSTGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAKMYSDDEAIA 119


>gi|239618474|ref|YP_002941796.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1]
 gi|239507305|gb|ACR80792.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1]
          Length = 148

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R +    +      +      ++    ++AF  L +  +   +  +   +  L  I
Sbjct: 9   RRKIREIVFRSIFQYDFHKDF-PAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLDEI 67

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D+++   L + +  R     + +LR++  ++LY  DV     ++ A+E  K+   ++   
Sbjct: 68  DSIITAYLKNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEITKKY-GSQEEG 126

Query: 122 KLVNSILRR 130
           K VN +L +
Sbjct: 127 KFVNGVLDK 135


>gi|73662539|ref|YP_301320.1| transcription antitermination protein NusB [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|119390831|sp|Q49XW9|NUSB_STAS1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|72495054|dbj|BAE18375.1| putative antitermination protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 128

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R  +   L  +  K   LT    + +       L       +  +V         
Sbjct: 2   SRKESRTQAFQTLFQLEMKNSDLTIEEAISFIKDDNPDLEFE---FISWLVTGVKDHEVV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L   +L R   S + +LR+S  ++L+       +++ AVE AK+  ++ H+ 
Sbjct: 59  LDEKIQPHLKDWTLARLLKSDRIILRMSTFEMLHSSTPQKVIINEAVELAKQFSDDDHYK 118

Query: 122 KLVNSILRR 130
             +N +L  
Sbjct: 119 -FINGVLSN 126


>gi|224476635|ref|YP_002634241.1| transcription antitermination protein NusB [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254772655|sp|B9DNQ0|NUSB_STACT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|222421242|emb|CAL28056.1| putative N utilization substance protein NusB [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 128

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R  +   L  +  +   L+    + +    +  L   +   +  +V+      P 
Sbjct: 2   SRKESRSQAFQALFQLEMENTDLSIDEAINFIKDDYPDL---EFDFIYWLVSGVKDHEPV 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  +   L    + R   + + +LR++  ++   D     +++ AVE AK+  ++ H+ 
Sbjct: 59  LDEKIQNNLKDWKISRLLKTDRIILRMAAFELANSDTPPKVIINEAVELAKQYSDDDHY- 117

Query: 122 KLVNSILRR 130
           + +N +L  
Sbjct: 118 RFINGVLSN 126


>gi|152966952|ref|YP_001362736.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216]
 gi|189035892|sp|A6WCD3|NUSB_KINRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|151361469|gb|ABS04472.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216]
          Length = 136

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 12  SHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
             +L    ++    L  L D                     +V   +    RID VL   
Sbjct: 12  LEVLFEADQRGLAPLDVLKDKILRADPPVG------EYAVTVVEGVVEHQARIDEVLSTY 65

Query: 71  -LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
            +   L R     + LLR+   ++LY  DV D+  V  AVE A ++       K VN +L
Sbjct: 66  SMAWPLDRMPAVDRALLRIGTWEVLYAADVPDHVAVSEAVEIA-QELSTDESPKFVNGLL 124

Query: 129 RR 130
            R
Sbjct: 125 AR 126


>gi|319408451|emb|CBI82106.1| N utilization substance protein B [Bartonella schoenbuchensis R1]
          Length = 156

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61
           ARL +   L  +    I +  +          + +        D    RA++   ++   
Sbjct: 19  ARLAAVQALYQMDIVGIGVREIAAEYKAYRLGKDIDGDQYLDADFQWFRAVIAGVVQNQK 78

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           ++D +L   L    SL R    L+ +LR  + +++ + ++    +V   V+ AK   E  
Sbjct: 79  QLDPMLQQKLSEEWSLSRLDSILRAILRAGLWELMNHKNIPTAVIVSEYVDVAKAFFEGD 138

Query: 119 HFAKLVNSILRR 130
              +LVN+IL R
Sbjct: 139 E-PRLVNAILDR 149


>gi|114776397|ref|ZP_01451442.1| transcription antitermination protein NusB [Mariprofundus
           ferrooxydans PV-1]
 gi|114553227|gb|EAU55625.1| transcription antitermination protein NusB [Mariprofundus
           ferrooxydans PV-1]
          Length = 145

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 3/132 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR      L      +     + +L          + +D+  +R  V       
Sbjct: 1   MANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQDESYLREAVYGITDHT 60

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
             +D ++   +   SL         ++R++V ++   L++    +++ A+E  +      
Sbjct: 61  DALDELIKTAVRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEALELTRDYAGEP 120

Query: 119 HFAKLVNSILRR 130
                +N +L  
Sbjct: 121 PR-GFINGVLDN 131


>gi|291542871|emb|CBL15981.1| transcription antitermination factor NusB [Ruminococcus bromii
           L2-63]
          Length = 164

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   +R  +  LL      +      L+    D++   +        +A+V+        
Sbjct: 30  TRSESREQAFMLLF----SKSFDDEPLEETIDDNSEMFVGGV-CAYAQAVVSGIEDKHEE 84

Query: 63  IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
           ID ++   L     L R       +LR+++ ++ YLD V     ++ AVE AK+   +  
Sbjct: 85  IDEIIASHLKKGWTLSRISKPSLAILRLAIYEMKYLDNVPQSVSINEAVELAKKYTIDES 144


>gi|317132176|ref|YP_004091490.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3]
 gi|315470155|gb|ADU26759.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3]
          Length = 136

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR  +  L+   + K  +++ +LDL        L+          +          
Sbjct: 2   TRREAREQALCLVFEGLFKEENVSEILDLAVQAREEFLVDT----FAEMLATGVYDHRDD 57

Query: 63  IDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID  ++   +  +  R    +  +LR++  ++LY  D  D   ++ AVE AK+   +   
Sbjct: 58  IDRKIEQYAIGWTKSRLSRVVLTVLRIAFFELLYEQDTPDSVAINEAVELAKKYGGDGDS 117

Query: 121 A 121
           A
Sbjct: 118 A 118


>gi|46200514|gb|AAL73534.2|AF466200_13 putative protein [Sorghum bicolor]
          Length = 297

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDI-------- 337
            L   D+      +      +D VLVDA C+  G+I+       W   T D         
Sbjct: 144 GLCKSDVFCPSVDNEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRILDAGRT 203

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q  LL  G   +K GG +V+S CSL    +E VVQ+ L + P         +  
Sbjct: 204 ENLLQLQLHLLTNGFKLLKTGGSLVYSTCSLTVSQNESVVQQFLSTHPSADLQKIDLADN 263

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           W      +  +    +R  P + +          G F     +L  
Sbjct: 264 WPCRSGGIPKT----LRFDPAVSQTS--------GLFVAKFSKLPT 297


>gi|125581864|gb|EAZ22795.1| hypothetical protein OsJ_06471 [Oryza sativa Japonica Group]
          Length = 394

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIV------- 338
            L   D I   A D      +D VLVDA C+  G+I+       W   T D         
Sbjct: 241 GLRKCDAIRPSADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERT 300

Query: 339 -KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q +LL  G   +K GG +V+S CSL    +E VVQ+ L       EL  ++SA 
Sbjct: 301 DDLLHLQLRLLTNGFKLLKTGGSLVYSTCSLTVAQNENVVQQFLCKH-SSAELQKIDSAD 359

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
                          +R  P         +S   G F     +L
Sbjct: 360 SWPCRSGSIF---KTLRFDP--------ATSQTSGLFVAKFTKL 392


>gi|308801203|ref|XP_003077915.1| ABC transporter C family protein (ISS) [Ostreococcus tauri]
 gi|116056366|emb|CAL52655.1| ABC transporter C family protein (ISS) [Ostreococcus tauri]
          Length = 1665

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 364  SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
            S CS+  +++E VV  +LR   + +    L      +          S E   R  P + 
Sbjct: 1491 STCSIAVEENEAVVDYILRKRDVKIVSSGLEFGRKGFTSYRGKNFHPSVEHARRFYPHV- 1549

Query: 421  EKIDGVSSGMDGFFAVALRRL 441
                     MDGFF   L++L
Sbjct: 1550 -------HNMDGFFVCKLKKL 1563


>gi|169794295|ref|YP_001712088.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AYE]
 gi|184159907|ref|YP_001848246.1| transcription antitermination protein NusB [Acinetobacter baumannii
           ACICU]
 gi|213159130|ref|YP_002321128.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB0057]
 gi|215481852|ref|YP_002324034.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB307-0294]
 gi|239502815|ref|ZP_04662125.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB900]
 gi|260557847|ref|ZP_05830060.1| transcription antitermination factor NusB [Acinetobacter baumannii
           ATCC 19606]
 gi|332850100|ref|ZP_08432487.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013150]
 gi|332871452|ref|ZP_08439969.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013113]
 gi|332873342|ref|ZP_08441296.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6014059]
 gi|226737436|sp|B7GUW2|NUSB_ACIB3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226737437|sp|B7I252|NUSB_ACIB5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238685542|sp|A3MA35|NUSB_ACIBT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688080|sp|B0V9X4|NUSB_ACIBY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238691018|sp|B2I2B2|NUSB_ACIBC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169147222|emb|CAM85081.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter baumannii AYE]
 gi|183211501|gb|ACC58899.1| Transcription termination factor [Acinetobacter baumannii ACICU]
 gi|193078716|gb|ABO13779.2| transcription termination L factor [Acinetobacter baumannii ATCC
           17978]
 gi|213058290|gb|ACJ43192.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB0057]
 gi|213988308|gb|ACJ58607.1| transcription antitermination factor NusB [Acinetobacter baumannii
           AB307-0294]
 gi|260408638|gb|EEX01943.1| transcription antitermination factor NusB [Acinetobacter baumannii
           ATCC 19606]
 gi|322509823|gb|ADX05277.1| nusB [Acinetobacter baumannii 1656-2]
 gi|323519833|gb|ADX94214.1| transcription antitermination protein NusB [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730949|gb|EGJ62255.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013150]
 gi|332731489|gb|EGJ62779.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6013113]
 gi|332738405|gb|EGJ69278.1| transcription antitermination factor NusB [Acinetobacter baumannii
           6014059]
          Length = 149

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +         +  +      ++A   +   D      ++   +     +DA+L  V
Sbjct: 19  AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQHEDLDALLIPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   +          LR+   ++  +L++    V+D A+E AK         K +N +L 
Sbjct: 76  LDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|146321671|ref|YP_001201382.1| transcription antitermination protein NusB [Streptococcus suis
           98HAH33]
 gi|145692477|gb|ABP92982.1| Transcription termination factor [Streptococcus suis 98HAH33]
 gi|292559096|gb|ADE32097.1| Antitermination protein NusB [Streptococcus suis GZ1]
          Length = 140

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 1   MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+  +A R  +   +  +   +  +         D           + +  +VN    +
Sbjct: 2   MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVADY 61

Query: 60  LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKE 116
              +D  L   L    +L R     + ++R+ + +IL + +  D   V+ A+E AK    
Sbjct: 62  RDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEF-S 120

Query: 117 NRHFAKLVNSILRRV 131
           +   AK VN +L + 
Sbjct: 121 DESSAKFVNGVLSQF 135


>gi|148261108|ref|YP_001235235.1| NusB antitermination factor [Acidiphilium cryptum JF-5]
 gi|326404509|ref|YP_004284591.1| transcription antitermination protein NusB [Acidiphilium multivorum
           AIU301]
 gi|146402789|gb|ABQ31316.1| NusB antitermination factor [Acidiphilium cryptum JF-5]
 gi|325051371|dbj|BAJ81709.1| transcription antitermination protein NusB [Acidiphilium multivorum
           AIU301]
          Length = 165

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 13/123 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS----------AFRLLSQRDQILVRA 51
           +    AR  +   L        +   ++D                    +   D  L   
Sbjct: 9   RPRTLARAAAVQALYQCEHAGETAETVIDQFVRHRFGRMAGMLGVEEGEVPPPDVPLFSR 68

Query: 52  IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV-DLAV 108
           IV         +D ++  VL     +PR    L+ LLR + A++   D     VV +  +
Sbjct: 69  IVRTATAQQDVVDPLIAGVLPEAWPMPRLDPVLRALLRAAGAELWMTDGPPARVVINEYL 128

Query: 109 EQA 111
           + A
Sbjct: 129 DVA 131


>gi|293392569|ref|ZP_06636889.1| transcription termination/antitermination factor NusB [Serratia
           odorifera DSM 4582]
 gi|291424971|gb|EFE98180.1| transcription termination/antitermination factor NusB [Serratia
           odorifera DSM 4582]
          Length = 117

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 26  TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQL 85
             + D+E      + +   D    R +++        +DA++   L   L       + +
Sbjct: 4   NDIADVELQFLTEQDVKDVDIAYFRELLSGVAVNAGTLDALMAPYLSRQLEELGQVEKAV 63

Query: 86  LRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           LR+++ ++ +  DV     ++ A+E AK         K VN +L +
Sbjct: 64  LRIALFELKMREDVPYKVAINEAIELAKTF-GAEDSHKFVNGVLDK 108


>gi|242080479|ref|XP_002445008.1| hypothetical protein SORBIDRAFT_07g002670 [Sorghum bicolor]
 gi|241941358|gb|EES14503.1| hypothetical protein SORBIDRAFT_07g002670 [Sorghum bicolor]
          Length = 408

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDI-------- 337
            L   D+      +      +D VLVDA C+  G+I+       W   T D         
Sbjct: 255 GLCKSDVFCPSVDNEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRILDAGRT 314

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q  LL  G   +K GG +V+S CSL    +E VVQ+ L + P         +  
Sbjct: 315 ENLLQLQLHLLTNGFKLLKTGGSLVYSTCSLTVSQNESVVQQFLSTHPSADLQKIDLADN 374

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
           W      +  +    +R  P + +          G F     +L  
Sbjct: 375 WPCRSGGIPKT----LRFDPAVSQTS--------GLFVAKFSKLPT 408


>gi|294102024|ref|YP_003553882.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261]
 gi|293617004|gb|ADE57158.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261]
          Length = 158

 Score = 74.2 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    +R ++  +L  +  +    +  ++  +    F             +V        
Sbjct: 8   QKRRRSREIAIQILYALDIRN---SEKVNEMFSLYPFGDEEPDVVSYASLLVKGVWEARF 64

Query: 62  RIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRH 119
            ID ++   +      R     +  LR+++ + I+   +     +  AVE AK       
Sbjct: 65  EIDTLIRKHVVGWRPERMVAVDRAALRLAIYEGIIKQMIPVPVAISEAVELAKTF-GTDE 123

Query: 120 FAKLVNSILRR 130
             + VN +L +
Sbjct: 124 SGRFVNGVLGK 134


>gi|293610510|ref|ZP_06692810.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826854|gb|EFF85219.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123924|gb|ADY83447.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter calcoaceticus PHEA-2]
          Length = 149

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +         +  +      ++A   +   D      ++   +     +DA+L  V
Sbjct: 19  AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQHEDLDALLIPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   L          LR+   ++  +L+V    V+D A+E AK         K +N +L 
Sbjct: 76  LDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|124803684|ref|XP_001347789.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23496040|gb|AAN35702.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 579

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 65/174 (37%), Gaps = 14/174 (8%)

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSS 318
           +       +  K+ L+K   +          +   +  +         F  +L+D PCS+
Sbjct: 365 NEYNKVRYERLKKVLDKYIPSDLINRSSNIHVTNYNGLNINSFLRFPKFHKILLDVPCST 424

Query: 319 TGTIRRH-PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
              + +     L       I  ++  Q +LL+   + +  GG++++S C+L   +++ V+
Sbjct: 425 DEHLIKQGTKELNKWSIHVIKNNSDIQLQLLINAFTLLHTGGVIIYSTCALSYLENDYVI 484

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           +K L+     ++++      +++             +   + +      +  +D
Sbjct: 485 EKFLKKYKNNIQIIDFIHEEYQTKIS----------QYLSNYVNNKRNHNHNID 528


>gi|158422890|ref|YP_001524182.1| antitermination protein [Azorhizobium caulinodans ORS 571]
 gi|158329779|dbj|BAF87264.1| antitermination protein [Azorhizobium caulinodans ORS 571]
          Length = 137

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 9/127 (7%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLPRIDAV 66
              L  +      +  +L         R +      + D+ L R +V   L     ID +
Sbjct: 1   MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPM 60

Query: 67  LDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
           +D  L     L R +  ++  LR    +++   +     V+   V  A      R    +
Sbjct: 61  VDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFF-EREETGM 119

Query: 124 VNSILRR 130
           VN++L  
Sbjct: 120 VNAVLDS 126


>gi|322824313|gb|EFZ29755.1| hypothetical protein TCSYLVIO_3957 [Trypanosoma cruzi]
          Length = 529

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 105/294 (35%), Gaps = 58/294 (19%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN-------------LSVLDLCAA 251
           +      + + P    G   +QD ++ +P  +                     ++D CAA
Sbjct: 238 VFPAGTDLHAHPAVRSGQLILQDRASCLPACILLDAVEVVRPSSVGAGAPLEYIVDACAA 297

Query: 252 PGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC--PKK 305
           PG KT  L   GA      A++  ++R + L   +  L      +++ +D F      ++
Sbjct: 298 PGNKTTHLAALGAPHVKIMAVERDEKRADLLFRRVQSLGASDYVNVVNLDFFQMSSADRE 357

Query: 306 LFDAVLVDAPCSSTGTIRR-------------------------------------HPDV 328
             + +L+D  CS++G + R                                         
Sbjct: 358 ATEGILLDPSCSASGVLTRVDVSLMRQRQARVAEDGEKNRGEDGAGNNETWAISPEEHGT 417

Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
            + R+ D ++  A  QRKLL   +        VV+S CS+  +++E VV++VL  + +  
Sbjct: 418 EFARNADRVMGLARLQRKLLAHALLSFDNCRTVVYSTCSVHVEENELVVRQVLEDTRVQA 477

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               L++    +       +      +  D   + D V+   +GF+     R +
Sbjct: 478 RGWALSNIMPTTWKTRGHKTEGDTFPL--DHTIRCDPVADATNGFYVARFDRAV 529


>gi|15605713|ref|NP_213090.1| transcription antitermination protein NusB [Aquifex aeolicus VF5]
 gi|7387972|sp|O66530|NUSB_AQUAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|168177029|pdb|2JR0|A Chain A, Solution Structure Of Nusb From Aquifex Aeolicus
 gi|2982871|gb|AAC06491.1| transcription termination NusB [Aquifex aeolicus VF5]
          Length = 148

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 3/136 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+    AR  +  +L     +  +   L      +   +     +    + +V+  +R +
Sbjct: 1   MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYE--YAKKLVDTAVRHI 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID++++  L   S+ R  Y  +  LR+ VA++++L   +   V + +    +   +  
Sbjct: 59  EEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEK 118

Query: 120 FAKLVNSILRRVSREK 135
             K VN +L  + +  
Sbjct: 119 AGKFVNGVLSAIYKAY 134


>gi|326475897|gb|EGD99906.1| hypothetical protein TESG_07236 [Trichophyton tonsurans CBS 112818]
          Length = 528

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 142/471 (30%), Gaps = 80/471 (16%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106
             + A++    ++   I  V+D   I +   K   +  LL V    +    +A  +  + 
Sbjct: 34  AQIYALIVEVAKYNECIKEVIDNAGILAHESKLTPILSLLLVHDFLLSKRGIAAPS--NH 91

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
            +  A    ++R  A+L    +RR    K EL  ++     + + F  R          L
Sbjct: 92  PLRLAVERHKSRLNAELTKLRVRRGCASKEELKHKLVQDQQVMQTFSPRWIRINNALTTL 151

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWW 224
                     Y  ++   ++           L      L  +   I   S   + EG   
Sbjct: 152 DHEIKSTFAGYESVSSLSELAEATANERKYFLDEHIPDLMAISRDIDITSSSAYKEGRII 211

Query: 225 VQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQL--------IVSGAKVTALDVS 272
           +QD ++  P  L            ++D CAAPG KT  L            ++V +LD S
Sbjct: 212 LQDKASCFPAYLLLGDHPGQWKGDLIDGCAAPGNKTTHLASLLSSAPEKQKSRVFSLDAS 271

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------VDAPCSSTGTIRRHP 326
             R + L+  + +        +                       +D  CS +G  +R  
Sbjct: 272 HSRSKILQTMVKKAGASNIVTVLPGQDFLALDPADTRFQHVTALLLDPSCSGSGITKRED 331

Query: 327 D----------------------VLWTRDTDDI-----------------------VKSA 341
                                      +   +                         K A
Sbjct: 332 VPLLDLPKSKAELMLSTTAGSKGSKNRKRKRENPVHSSSPGTFPTTEAKEDASERLAKLA 391

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPLNS- 395
             Q +++     F      V +S CS+  +++E+VV +VL     ++    +EL    + 
Sbjct: 392 NLQSQIVEHAFGFPAAT-RVTYSTCSIHHEENEDVVARVLASSIAKNRGWRLELRSEQAR 450

Query: 396 --AYWKSIDMAMALSPEGWIRITPD----MLEKIDGVSSGMDGFFAVALRR 440
               W    M    + E   +++P+     +        G  GFF     R
Sbjct: 451 GLRNWHHRGMLSGGTSECPPQLSPEQVEACIRCWPAGDEGTGGFFVAIFVR 501


>gi|326483000|gb|EGE07010.1| NOL1/NOP2/sun domain-containing protein [Trichophyton equinum CBS
           127.97]
          Length = 528

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 142/471 (30%), Gaps = 80/471 (16%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106
             + A++    ++   I  V+D   I +   K   +  LL V    +    +A  +  + 
Sbjct: 34  AQIYALIVEVAKYNECIKEVIDNAGILAHESKLTPILSLLLVHDFLLSKRGIAAPS--NH 91

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
            +  A    ++R  A+L    +RR    K EL  ++     + + F  R          L
Sbjct: 92  PLRLAVERHKSRLNAELTKLRVRRGCASKEELKHKLVQDQQVMQTFSPRWIRINNALTTL 151

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWW 224
                     Y  ++   ++           L      L  +   I   S   + EG   
Sbjct: 152 DHEIKSTFAGYESVSSLSELAEATANERKYFLDEHIPDLMAISRDIDITSSSAYKEGRII 211

Query: 225 VQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQL--------IVSGAKVTALDVS 272
           +QD ++  P  L            ++D CAAPG KT  L            ++V +LD S
Sbjct: 212 LQDKASCFPAYLLLGDHPGQWKGDLIDGCAAPGNKTTHLASLLSSAPEKQKSRVFSLDAS 271

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------VDAPCSSTGTIRRHP 326
             R + L+  + +        +                       +D  CS +G  +R  
Sbjct: 272 HTRSKILQTMVKKAGASNIVTVLPGQDFLALDPADTRFQHVTALLLDPSCSGSGITKRED 331

Query: 327 D----------------------VLWTRDTDDI-----------------------VKSA 341
                                      +   +                         K A
Sbjct: 332 VPLLDLPKSKAELMLSTTAGSKGSKNRKRKRENPVHSSSPGTFPTTEAKEDASERLAKLA 391

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPLNS- 395
             Q +++     F      V +S CS+  +++E+VV +VL     ++    +EL    + 
Sbjct: 392 NLQSQIVEHAFGFPAAT-RVTYSTCSIHHEENEDVVARVLASSIAKNRGWRLELRSEQAR 450

Query: 396 --AYWKSIDMAMALSPEGWIRITPD----MLEKIDGVSSGMDGFFAVALRR 440
               W    M    + E   +++P+     +        G  GFF     R
Sbjct: 451 GLRNWHHRGMLSGGTSECPPQLSPEQVEACIRCWPAGDEGTGGFFVAIFVR 501


>gi|309389162|gb|ADO77042.1| NusB antitermination factor [Halanaerobium praevalens DSM 2228]
          Length = 133

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS----AFRLLSQRDQILVRAIVNVTLR 58
           S    R+ +  +L  +  ++      L+          A + +   D   V  I+   + 
Sbjct: 5   SRHKQRIWALQILYGLDIRKK---LALEHSKKSYENFMAEKGVLSEDL-YVAEILEGIIL 60

Query: 59  FLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
            L  +DA +D   +   + R     + +LR++  +I + D+     ++ AV+ AK+   +
Sbjct: 61  ELELLDAQIDQYAINWDIERMPAIDRNILRIAAYEIQH-DIPAKVAINEAVKIAKKY-AD 118

Query: 118 RHFAKLVNSILRRV 131
                 +N IL + 
Sbjct: 119 DSSPSFINGILSKF 132


>gi|226356156|ref|YP_002785896.1| N utilization substance protein B (Protein nusB)(NusB
           antitermination factor) [Deinococcus deserti VCD115]
 gi|259514814|sp|C1CVC5|NUSB_DEIDV RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|226318146|gb|ACO46142.1| putative N utilization substance protein B (Protein nusB)(NusB
           antitermination factor) [Deinococcus deserti VCD115]
          Length = 168

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTL 57
           +   AR     +L    R  + L  +     G     D  F  LS         +V    
Sbjct: 14  TRRAAREFVFRVLFEADRGDLPLDTVFTRAEGAMREGDDTFPQLSADALTFANELVRGLE 73

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
           +    ID  L   +   S  +   +   +LR++  +++Y       V++ AV  A++   
Sbjct: 74  KHRADIDTTLRRTIRGWSFDQMAQTDLNVLRLATFELIYTAEPHPPVIESAVRIARKFGG 133

Query: 117 NRH 119
           +  
Sbjct: 134 DDS 136


>gi|332022336|gb|EGI62648.1| Putative methyltransferase NSUN5 [Acromyrmex echinatior]
          Length = 631

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 156/452 (34%), Gaps = 55/452 (12%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +++ ++  V     SL  L+  +   +            +  +   TL+ LP++D + D
Sbjct: 16  KITADIVRRVREDGASLKTLIYEKKHPNV---------AGIYGLAVNTLQALPQLDQLFD 66

Query: 69  F---VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
               +      R       L RV + ++L+                KR  +NR    L  
Sbjct: 67  KTQILTEQP--RLNPW---LARVLITELLWR---------------KRCLKNRSKPVLTV 106

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
                  RE+   L  I       +   +R         +L++  A          +   
Sbjct: 107 LAYENKLREESINLGYIETFVDHKD-KVKRPRYVRVNTLLLSVEKAISLFQEDGWQLLPK 165

Query: 186 IETWAHKLNAVMLPTGGIRLKELPES----------IVSLPGFAEGVWWVQDASASIPVQ 235
             T++  L ++   +    +++L               +  G+  G   +QD ++S+PV 
Sbjct: 166 STTYSSYLQSLSQLSEPYFIQDLHIPEMLAFPPSTIFHNHEGYRGGKLILQDKASSLPVH 225

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292
           L   ++  +VLD+CAAPG K       + +   + A+++  +R + L   L++ H    +
Sbjct: 226 LLNPISGSTVLDMCAAPGMKATHVAAKLQNNGTIYAVEIDAKRFKTLLTQLEKTHALCVE 285

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS----ACFQRKLL 348
            +  D      K       +    + +G+           D    +K       FQ  LL
Sbjct: 286 PLNQDVLTLNSKLYSHVEYILVDPTCSGSGIVDRPKQSEMDGMPELKRLKNLQSFQVYLL 345

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408
              +        +++S CSL  +++EEVV +VL +      L+P+     K+     +  
Sbjct: 346 RYALFNFPNAKRIIYSTCSLHPEENEEVVDEVLANVGNAYRLLPVRQ-LLKNNWTNFSSK 404

Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    D+           +GFF     R
Sbjct: 405 KYNC----GDLCLYSKPNDDFCNGFFVAVFER 432


>gi|294670752|ref|ZP_06735614.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307540|gb|EFE48783.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 143

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 7/147 (4%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L        S   +       + F+     D  L  A+      
Sbjct: 1   MKTSPRRRAREFTVQALYQAALNHASAPEIAKNIREAADFKR---ADADLFTALFFGAHG 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
                  ++  +L           + +L ++  ++  + +     +++ A+E  K     
Sbjct: 58  NSAEYMQIIRPLLDRDEKDINPIERGILLMACHELSAMPETPYPVIINEAIEVTKTFGGT 117

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAG 144
               K +N IL ++S +      + A 
Sbjct: 118 DS-HKFINGILDKLSVQLRPNDPKRAP 143


>gi|323340820|ref|ZP_08081072.1| transcription antitermination factor NusB [Lactobacillus ruminis
           ATCC 25644]
 gi|323091943|gb|EFZ34563.1| transcription antitermination factor NusB [Lactobacillus ruminis
           ATCC 25644]
          Length = 128

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  + R ++   L  +         +    Y     + +   +   +  +V+     L  
Sbjct: 2   SRHDIRRLAFQTLFAMSSN---PDAVATDVYQTVLGKDIEAPE--YLTQLVDGVNEHLAE 56

Query: 63  IDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           ID  +   L     + R   +   L+R++V +I +  +V +   ++ A+E +K    +  
Sbjct: 57  IDEAISAHLKKGWPISRLNKTDLILMRIAVYEIKFVEEVPNKVSLNEALELSKEF-SDET 115

Query: 120 FAKLVNSILRR 130
             + +N +L  
Sbjct: 116 SRRFINGVLSN 126


>gi|167533590|ref|XP_001748474.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772993|gb|EDQ86638.1| predicted protein [Monosiga brevicollis MX1]
          Length = 297

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 20/178 (11%)

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRD- 333
           L   R    R     ++    +       +L+D VLVDA C+  G+I+       W    
Sbjct: 119 LRAAREAYLREQDAQDEAQTANPPVQATDQLYDKVLVDAECTHDGSIKHLTKFDRWGWST 178

Query: 334 -------TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386
                     I +    QR LL  G   ++ GG +V+S CS   + +E++VQ +L   P 
Sbjct: 179 FEQRFFDPTRISQLETLQRGLLQNGFRRLREGGTLVYSTCSFSHRQNEDIVQWLLDHEPG 238

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
              L     A + +       + +         + K   V++   G F     +  QP
Sbjct: 239 AQLLSCKGMAAFPAAAFHPLATAD---------VLKFSPVATATSGLFVARFTK--QP 285


>gi|308276510|gb|ADO26409.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis I19]
          Length = 210

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLP 61
           S   AR  ++ +L     + +    +++     S  + L         + IV  T + L 
Sbjct: 30  SRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVAPVAAYTKEIVAGTAQELD 89

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
           RID ++   L     L R     + +LRV+V ++++  DV     V   VE         
Sbjct: 90  RIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAVVDGVELV-SQYSTD 148

Query: 119 HFAKLVNSILRRVSREKIEL 138
                VN++L  +++     
Sbjct: 149 VAPAYVNALLDSIAQNIESH 168


>gi|300858556|ref|YP_003783539.1| N utilization substance protein B-like protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686010|gb|ADK28932.1| N utilization substance protein B-like protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206268|gb|ADL10610.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis C231]
 gi|302330826|gb|ADL21020.1| N utilization substance protein B (Protein nusB) [Corynebacterium
           pseudotuberculosis 1002]
          Length = 208

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLP 61
           S   AR  ++ +L     + +    +++     S  + L         + IV  T + L 
Sbjct: 28  SRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVAPVAAYTKEIVAGTAQELD 87

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
           RID ++   L     L R     + +LRV+V ++++  DV     V   VE         
Sbjct: 88  RIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAVVDGVELV-SQYSTD 146

Query: 119 HFAKLVNSILRRVSREKIEL 138
                VN++L  +++     
Sbjct: 147 VAPAYVNALLDSIAQNIESH 166


>gi|282853858|ref|ZP_06263195.1| transcription antitermination factor NusB [Propionibacterium acnes
           J139]
 gi|282583311|gb|EFB88691.1| transcription antitermination factor NusB [Propionibacterium acnes
           J139]
 gi|314923552|gb|EFS87383.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL001PA1]
 gi|314966598|gb|EFT10697.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL082PA2]
 gi|314981523|gb|EFT25617.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA3]
 gi|315092187|gb|EFT64163.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA4]
 gi|315092880|gb|EFT64856.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL060PA1]
 gi|315103598|gb|EFT75574.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA2]
 gi|327327421|gb|EGE69197.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL103PA1]
          Length = 261

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +  +L            +L      +   + +   +     +V        
Sbjct: 37  STRSKARKQALDILFEADLIGTDPLEVLA-----ARPGVFTNPVRPFAADLVRGVTATQV 91

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +D+VL   L    +L R     + L R+   +IL+ D  + AV+  A+E ++       
Sbjct: 92  GLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEF-STDD 150

Query: 120 FAKLVNSILRRVSREKIELLQRIA 143
            A  +N +L  V       ++  +
Sbjct: 151 SAPFLNGLLGAVITHGPACIEDQS 174


>gi|319407319|emb|CBI80960.1| N utilization substance protein B [Bartonella sp. 1-1C]
          Length = 156

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +    I    ++         + +        D     +I+   
Sbjct: 14  NKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDGSQYLDADFQWFCSIIVGV 73

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +R   ++D +L   L    +L R   +L+ +LR  + +++   DV    +++  ++ AK 
Sbjct: 74  VRDQKQLDPMLHKQLSEEWALSRLDSTLRAILRAGLWELINRKDVPIAVILNEYIDIAKA 133

Query: 114 DKENRHFAKLVNSILRRVSREKIE 137
             +N    +LVN++L  +++E  +
Sbjct: 134 FFDNDE-PRLVNAVLDSIAKEMCQ 156


>gi|292670715|ref|ZP_06604141.1| transcription antitermination factor NusB [Selenomonas noxia ATCC
           43541]
 gi|292647661|gb|EFF65633.1| transcription antitermination factor NusB [Selenomonas noxia ATCC
           43541]
          Length = 138

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  +AR  +   L  +             +        +++ D      +V+ T  FL  
Sbjct: 2   SRRSAREAALLTLFQLEFDADKACEERVSDLAIDEVDGITEEDLPYAHNLVHGTRSFLSE 61

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRH 119
           IDA ++ +     L R     + L+R++  ++ Y    +     ++ AVE AK+   +  
Sbjct: 62  IDAEIERMAKEWKLRRMAAVDRNLIRMAYYEMRYQEERIDPPVAINEAVELAKKY-GSDD 120

Query: 120 FAKLVNSILRRVSR 133
             + VN IL  + +
Sbjct: 121 AGRYVNGILAAMQK 134


>gi|110803071|ref|YP_699107.1| transcription antitermination protein NusB [Clostridium perfringens
           SM101]
 gi|119390760|sp|Q0SS00|NUSB_CLOPS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110683572|gb|ABG86942.1| N utilization substance protein B [Clostridium perfringens SM101]
          Length = 135

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           + + +R     L   +     +     +    +         D   +++ +        +
Sbjct: 2   NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISK-DDLDLAYIKSGLLGIEENKEK 60

Query: 63  IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +D++++  ++   L R       +LR+S  +IL+  DV     ++ A+E  K+  +N+  
Sbjct: 61  LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120

Query: 121 AKLVNSILRRVSRE 134
           +  +N +L +V + 
Sbjct: 121 S-FINGVLDKVYKN 133


>gi|294678589|ref|YP_003579204.1| transcription antitermination factor NusB [Rhodobacter capsulatus
           SB 1003]
 gi|294477409|gb|ADE86797.1| transcription antitermination factor NusB [Rhodobacter capsulatus
           SB 1003]
          Length = 165

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS------AFRLLSQRDQILVRAIVNVTL 57
              ARL +   L  +      +  +                  L++ D  L R +++  +
Sbjct: 21  RSAARLYAVQALFQMEAAGQGVDRVAREFESFRFGMVTDEGEELAEGDYDLFRRLLDDAV 80

Query: 58  RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
            +  +ID   D  L     + R    L+ L R + A+++        V++  VE A+   
Sbjct: 81  MWQAKIDQTTDRALVATWPIERIDPVLRALFRAAGAEMVNPATPIKVVINEFVEVARAFF 140

Query: 116 ENRHFAKLVNSILRRV 131
                 K VN++L  +
Sbjct: 141 PEGKETKFVNAVLDHM 156


>gi|296111669|ref|YP_003622051.1| transcription antitermination protein NusB [Leuconostoc kimchii
           IMSNU 11154]
 gi|295833201|gb|ADG41082.1| transcription antitermination protein NusB [Leuconostoc kimchii
           IMSNU 11154]
          Length = 138

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           +   +R  +  +L  + +   S  +  L D+      +     R       +VN  L   
Sbjct: 5   TRHESRQAAFQVLFALEKDPQSNNIDKLYDIVLAGKDYDDYLPR-------LVNGILGTK 57

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +D  +   L    ++ R   +   +LR++V ++L   V     +D A+   K    + 
Sbjct: 58  TELDEQIAAHLADGWAINRLNKADLIILRLAVYELLNNLVPYKVAIDEALILTKTF-SDE 116

Query: 119 HFAKLVNSILRRVSR 133
              K VN +L+  + 
Sbjct: 117 DSRKFVNGVLKNFAP 131


>gi|308161305|gb|EFO63758.1| tRNA/rRNA cytosine-C5-methylase [Giardia lamblia P15]
          Length = 458

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 130/426 (30%), Gaps = 55/426 (12%)

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQ--LLRVSVAQILYLDVADYAVVDL-AVEQAK 112
            LR L   D +L   +         +L+   +L ++   +L   +         +   A 
Sbjct: 41  ALRALGHAD-LLKDTISRLAKADDTTLEHNHVLVMATEALLGDGIPHRRRRLEGSTRDAL 99

Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172
           R  +          ++++   +  +          +P  F+  L+     E         
Sbjct: 100 RIVKTHM--PEFACLIKKPDTDSAKSRSATNIAPYLPRAFRVNLDKREYPEINDEADRMR 157

Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAEGVWWVQDASA 230
           ++    +  +    +   ++L +    T    LK+     +      F        + + 
Sbjct: 158 LTLEAEEQCILRVQDQLQNELPSEAKLTRHPVLKDFLLVSAPDLKIPFHNLWVVKTNQAV 217

Query: 231 SIPVQLFGTL--------------NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
              +     L               N+ VLD+CAAPG KT Q     + V A D+ +RR 
Sbjct: 218 MQSLASGLPLAALREAAIKLLPSLKNVCVLDVCAAPGSKTFQACNYFSGVHANDLDRRRC 277

Query: 277 EKLRCNLDRLHLY--------------AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI 322
           E +      L                    +I  +            ++ D  CSS+G  
Sbjct: 278 EIILRRGKELISTKAVRSTNVVAGLPINSLVITSNDALRLKDTGCQIIVCDPTCSSSGIY 337

Query: 323 RRHPDVL-----WTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCSLDKQDSEE 375
                 L       +   D  + + FQ KLL +     K P  ++V +S CS+   ++E+
Sbjct: 338 SNKDASLAEAAGVAKTHADPAELSQFQIKLLTKL--LTKFPSALLVSYSTCSIHSVENED 395

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           VV  V+       +   L +A  +                 P             DGFFA
Sbjct: 396 VVAAVMGDETGISKEWELWNALPEWPLRGKK----------PYTHCLRADKRQKTDGFFA 445

Query: 436 VALRRL 441
               R 
Sbjct: 446 AIFVRK 451


>gi|159116195|ref|XP_001708319.1| tRNA/rRNA cytosine-C5-methylase [Giardia lamblia ATCC 50803]
 gi|157436430|gb|EDO80645.1| tRNA/rRNA cytosine-C5-methylase [Giardia lamblia ATCC 50803]
          Length = 458

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 131/427 (30%), Gaps = 57/427 (13%)

Query: 56  TLRFLPRIDAV---LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL-AVEQA 111
            LR L   D +   +  +  +     +++   +L ++   +L   V         +   A
Sbjct: 41  ALRALGHADPLKDTISRLANADDTTLEHN--HVLVMATEALLGDGVPHRRRRLEGSTRDA 98

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171
            R  +          +L++     ++     +    +P  F+  L+     E        
Sbjct: 99  LRIVKTHM--PEFACLLKKPDATSVKSHNATSATPYLPRAFRVNLDKREYPEINDEADRM 156

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAEGVWWVQDAS 229
            ++    +  V    +   ++L      T    LK+     +      F        + +
Sbjct: 157 RLTLEAEEQCVLRVQDQLQNELPPEAKLTRHPILKDFLLISAPDMKIPFHNLWVVKTNQA 216

Query: 230 ASIPVQLFGTL--------------NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR 275
               +     L               N+ VLD+CAAPG KT Q     + V A D+ +RR
Sbjct: 217 VMQSLASGLPLAALREAAIKLFPSLKNVCVLDVCAAPGSKTFQACNYFSGVHANDLDRRR 276

Query: 276 LEKLRCNLDRLHLY--------------AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
            E +      L                    +I  +            ++ D  CSS+G 
Sbjct: 277 CEIILRRGKELVSTKAVRSANVVAGLPINSLVITSNDALRLKDTGCQIIVCDPTCSSSGI 336

Query: 322 IRRHPDVL-----WTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCSLDKQDSE 374
                  L       +   D  + + FQ KLL +     K P  ++V +S CS+   ++E
Sbjct: 337 YSNKDASLAEAAGVAKTHADPAELSQFQIKLLTKL--LTKFPSALLVSYSTCSIHSVENE 394

Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           +VV  V+       +   L +A  +                 P             DGFF
Sbjct: 395 DVVAAVMEDETGISKEWELWNALPEWPLRGKK----------PYTCCLRADKRQKTDGFF 444

Query: 435 AVALRRL 441
           A    R 
Sbjct: 445 AAIFVRK 451


>gi|327399588|ref|YP_004340457.1| NusB antitermination factor [Hippea maritima DSM 10411]
 gi|327182217|gb|AEA34398.1| NusB antitermination factor [Hippea maritima DSM 10411]
          Length = 133

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR V+   +                  G          D+   + +++ T++ L  
Sbjct: 2   SRRKARTVAVQYIYSKEFGNEDSPYAFMDFVGHPKKED----DKAFAKKLIDGTIQNLDI 57

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV-DLAVEQAKRDKENRHFA 121
           I+ ++     +         + +LRV + ++L+L  A   VV +  V  AK   +     
Sbjct: 58  INNLIKKYASAGDDIMSLIDKSILRVGIYELLFLREAHPVVVINEYVNIAKELSK-ESSK 116

Query: 122 KLVNSILRRVSR 133
            LVN+IL +V +
Sbjct: 117 SLVNAILDKVYK 128


>gi|297566828|ref|YP_003685800.1| NusB antitermination factor [Meiothermus silvanus DSM 9946]
 gi|296851277|gb|ADH64292.1| NusB antitermination factor [Meiothermus silvanus DSM 9946]
          Length = 156

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 13/139 (9%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--------DQI---LVRAI 52
              AR ++  +L       +SL    +    +      S          DQ      R +
Sbjct: 2   RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61

Query: 53  VNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
           +    R    ID VL   +   S  +   +   +LR++  ++LY       ++++AV+ A
Sbjct: 62  LEGYQRHESEIDEVLGNTIQGWSFGQMAKTDLAVLRLAAYEMLYEPTPYAPLIEVAVKIA 121

Query: 112 KRDKENRHFAKLVNSILRR 130
           KR        + VN +L R
Sbjct: 122 KRY-GGEDSGRFVNGVLGR 139


>gi|169634846|ref|YP_001708582.1| transcription antitermination protein NusB [Acinetobacter baumannii
           SDF]
 gi|238688150|sp|B0VPT9|NUSB_ACIBS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169153638|emb|CAP02830.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter baumannii]
          Length = 149

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +         +  +      ++A   +   D      ++   +     +DA+L  V
Sbjct: 19  AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQHEDLDALLIPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   +          LR+   ++  +L++    V+D A+E AK         K +N +L 
Sbjct: 76  LDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|156544361|ref|XP_001607372.1| PREDICTED: similar to Nop2p, putative [Nasonia vitripennis]
          Length = 496

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 23/235 (9%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLR 280
           ++V D ++ +PV         +VLD+CAAPGGK       ++   + A D+ + R+ ++ 
Sbjct: 268 YFVLDGASVLPVLSLDLQPGDTVLDMCAAPGGKIMTALQTLNARLIIANDIQESRINRIN 327

Query: 281 CNLDRLHLYA------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTR 332
             +  L            I + DA     K +++ +LVD PC++          ++  + 
Sbjct: 328 RFMQELLPSIGDWDKRFFITQSDARYIEDKNIYNKILVDVPCTTDRHVLHEDDNNIFKST 387

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVE 389
              + ++    Q  +L   +     GG VV+S CSL    ++ VVQ  L+        + 
Sbjct: 388 RVKERLRLPEIQCDILKNALKIAILGGTVVYSTCSLSPIQNDGVVQMALKKAFEESNVLY 447

Query: 390 LVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +V   +   K +         G      + P                +   + R+
Sbjct: 448 VVKDQTRALKPLQFLYNFGDNGLKYGHIVVPSKSRNWGP-------MYFCKMVRV 495


>gi|304312173|ref|YP_003811771.1| N utilization substance protein B, transcription termination factor
           [gamma proteobacterium HdN1]
 gi|301797906|emb|CBL46128.1| N utilization substance protein B, transcription termination factor
           [gamma proteobacterium HdN1]
          Length = 136

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79
               SL+ +      D+  R   + D      +++     +  +D+ +   L   +    
Sbjct: 1   MTGDSLSSIEAQFRTDNDMR---KTDVAYFHELLHGVPSCVADLDSAISPFLDREITELD 57

Query: 80  YSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
              + +LR++  ++L   D+     ++  +E AK         K VN +L +V++     
Sbjct: 58  QVERAILRLATYELLKRQDIPYRVAINEGIELAKTFGATES-HKYVNGVLDKVAQRLRYH 116


>gi|225023290|ref|ZP_03712482.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC
           23834]
 gi|224943935|gb|EEG25144.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC
           23834]
          Length = 145

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 12/121 (9%), Positives = 35/121 (28%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      ++     +     ++ +   ++ D  L  AI         
Sbjct: 7   TPRRRAREFAVQALYQAALNQLP-DAEVAKNIRENEY--FAKADNELFTAIFFGVQAKRR 63

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +  ++  +L             +L  +  ++  + +     +++ A+E  K        
Sbjct: 64  ELMQIIRPLLDRDEKDLSPIECAVLLAAAFELRDMPETPYPVIINEAIEVTKTFGGIDGH 123

Query: 121 A 121
            
Sbjct: 124 K 124


>gi|15902434|ref|NP_357984.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae R6]
 gi|183603887|ref|ZP_02722699.2| transcription antitermination factor NusB [Streptococcus pneumoniae
           MLV-016]
 gi|15457952|gb|AAK99194.1| Transcription termination protein [Streptococcus pneumoniae R6]
 gi|183577498|gb|EDT98026.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           MLV-016]
          Length = 146

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 14  SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLIDLVSGVQAKKEE 71

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 72  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 130

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 131 ARFINGLLSQF 141


>gi|15900351|ref|NP_344955.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TIGR4]
 gi|111657914|ref|ZP_01408625.1| hypothetical protein SpneT_02000923 [Streptococcus pneumoniae
           TIGR4]
 gi|116516227|ref|YP_815903.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae D39]
 gi|148983827|ref|ZP_01817146.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988184|ref|ZP_01819647.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP6-BS73]
 gi|148996835|ref|ZP_01824553.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003529|ref|ZP_01828403.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP14-BS69]
 gi|149012182|ref|ZP_01833291.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP19-BS75]
 gi|149023719|ref|ZP_01836199.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168482670|ref|ZP_02707622.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1873-00]
 gi|168490656|ref|ZP_02714799.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC0288-04]
 gi|168495037|ref|ZP_02719180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832898|ref|YP_001693937.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194396779|ref|YP_002037111.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae G54]
 gi|221231296|ref|YP_002510448.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae ATCC 700669]
 gi|225856159|ref|YP_002737670.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae P1031]
 gi|225860454|ref|YP_002741963.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650354|ref|ZP_04524606.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822042|ref|ZP_04597887.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298230814|ref|ZP_06964495.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254607|ref|ZP_06978193.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502226|ref|YP_003724166.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TCH8431/19A]
 gi|307067077|ref|YP_003876043.1| transcription termination factor [Streptococcus pneumoniae AP200]
 gi|54037926|sp|P65583|NUSB_STRR6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|54041676|sp|P65582|NUSB_STRPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|122279211|sp|Q04M45|NUSB_STRP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238688321|sp|B1I9M4|NUSB_STRPI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690799|sp|B5E1P3|NUSB_STRP4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772658|sp|B8ZLJ7|NUSB_STRPJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772661|sp|C1CIT2|NUSB_STRZP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772662|sp|C1CPU1|NUSB_STRZT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|14971902|gb|AAK74595.1| N utilization substance protein B [Streptococcus pneumoniae TIGR4]
 gi|116076803|gb|ABJ54523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           D39]
 gi|147757410|gb|EDK64449.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758465|gb|EDK65464.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP14-BS69]
 gi|147763784|gb|EDK70718.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923974|gb|EDK75086.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP3-BS71]
 gi|147926648|gb|EDK77721.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP6-BS73]
 gi|147929656|gb|EDK80648.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168995400|gb|ACA36012.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172043807|gb|EDT51853.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1873-00]
 gi|183575029|gb|EDT95557.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC0288-04]
 gi|183575089|gb|EDT95617.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC3059-06]
 gi|194356446|gb|ACF54894.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           G54]
 gi|220673756|emb|CAR68255.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae ATCC 700669]
 gi|225725650|gb|ACO21502.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           P1031]
 gi|225726476|gb|ACO22327.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237821|gb|ADI68952.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301799529|emb|CBW32077.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae OXC141]
 gi|306408614|gb|ADM84041.1| Transcription termination factor [Streptococcus pneumoniae AP200]
 gi|327390840|gb|EGE89180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA04375]
 gi|332202338|gb|EGJ16407.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA41317]
 gi|332203602|gb|EGJ17669.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA47368]
 gi|332204458|gb|EGJ18523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA47901]
          Length = 140

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 8   SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLIDLVSGVQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 66  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|195996617|ref|XP_002108177.1| hypothetical protein TRIADDRAFT_52388 [Trichoplax adhaerens]
 gi|190588953|gb|EDV28975.1| hypothetical protein TRIADDRAFT_52388 [Trichoplax adhaerens]
          Length = 358

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 120/312 (38%), Gaps = 37/312 (11%)

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPT 200
             S IP + +         + +          +  DL       DI     K+    +  
Sbjct: 19  MASGIPRYVRVNTLKMTKVKAIERFIANGFQYIPSDLVYNAGTVDITKLREKIFTSDIHI 78

Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258
             + +      +     +  G   +QD ++ IP           ++D CAAPG KT+   
Sbjct: 79  ENLLVLPPKSDLHDNEMYLNGEVVLQDKASCIPAFTLNPPPQSCIIDACAAPGNKTSHLA 138

Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317
            +I +  K+ A D+S  R++ +R  LD+  +                +  + +L+D  CS
Sbjct: 139 SIIGNVGKIYAFDISPNRIKTMRELLDKAGV-NVM----------EYEDVEYILLDPSCS 187

Query: 318 STGTIRRHPDVLWTRDTDDIVKS-----ACFQRKLLLQGISF--VKPGGIVVFSNCSLDK 370
            +G + R      ++   +  K+     A FQ K L Q +SF  VK    VV+S CS++ 
Sbjct: 188 GSGIVDRGDINAESKKLCNANKNRLQSLADFQLKALKQALSFPSVKK---VVYSTCSMNV 244

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430
           +++EEVV+  L+      +L+P+    W    M+     +   R +P          +  
Sbjct: 245 EENEEVVEAALKVFGNKYKLIPV-LEDWPYRGMSGYAHWKFMFRSSP---------KTST 294

Query: 431 DGFFAVALRRLI 442
            GFF     R+ 
Sbjct: 295 TGFFVALFSRIT 306


>gi|154292352|ref|XP_001546751.1| hypothetical protein BC1G_14665 [Botryotinia fuckeliana B05.10]
 gi|150846144|gb|EDN21337.1| hypothetical protein BC1G_14665 [Botryotinia fuckeliana B05.10]
          Length = 252

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 33/187 (17%)

Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------LFDAVLV 312
            A D   +R   L   L RL      +   DA  +   K               FD +L 
Sbjct: 70  IANDADYKRSHMLIHQLKRLSSPNLIVTNHDATMFPSIKLPPTPENPATNRYLKFDRILA 129

Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL---- 368
           D PCS  GT R++ ++    +  + +     Q ++L++ +  +K GG VV+S CSL    
Sbjct: 130 DVPCSGDGTTRKNVNLWKDWNPGNALGLYVTQVRILVRALQMLKVGGRVVYSTCSLKTWT 189

Query: 369 ----------DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITP 417
                        +    +QK +  +        L    +   D +M+  P +  +R+  
Sbjct: 190 VMDKKGRIWKSWAE----LQKFIAENGQDDWTGRLVEGMFPPTDESMSSVPLDQCMRVYA 245

Query: 418 DMLEKID 424
            + +   
Sbjct: 246 HLQDTGW 252


>gi|183982195|ref|YP_001850486.1| N utilization substance protein NusB [Mycobacterium marinum M]
 gi|183175521|gb|ACC40631.1| N utilization substance protein NusB [Mycobacterium marinum M]
          Length = 173

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR  +  L+     + +    + DL    +  +           A+     +   
Sbjct: 11  KGRHQARKRAVDLMFEAEARGLGPGEIADLRTELAETKPDVAPLHPYTAAVARGIDQHAA 70

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            ID ++   L   +L R     + +LRV+V ++LY  DV +   VD AVE AK       
Sbjct: 71  HIDDLITSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVELAKE-LSTDD 129

Query: 120 FAKLVNSILRRVS 132
               VN +L +V 
Sbjct: 130 SPSFVNGVLGQVM 142


>gi|302335896|ref|YP_003801103.1| NusB antitermination factor [Olsenella uli DSM 7084]
 gi|301319736|gb|ADK68223.1| NusB antitermination factor [Olsenella uli DSM 7084]
          Length = 165

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL        S+  +L+ +Y  +    L         ++          +
Sbjct: 10  RTLARSQALQLLFQAEATGRSVFEVLEGDYALTQG-PLDP----FGESLARGVDDMRTDL 64

Query: 64  DAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           DA++       S+ R     + LLR+++ ++L +D VA    +D  VE AK        +
Sbjct: 65  DAIIAVTSSNWSISRMPSVDRNLLRLALYEMLEVDEVATPIAIDECVELAKAY-GTAESS 123

Query: 122 KLVNSILRR 130
           + VN +L R
Sbjct: 124 RFVNGLLGR 132


>gi|262283503|ref|ZP_06061269.1| transcription antitermination protein NusB [Streptococcus sp.
           2_1_36FAA]
 gi|262260994|gb|EEY79694.1| transcription antitermination protein NusB [Streptococcus sp.
           2_1_36FAA]
          Length = 141

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 18/129 (13%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNV 55
           S  + R  +   L  +           +       F  L  +++         +  +VN 
Sbjct: 8   SRRDLRERAFQALMSLEYD--------EDIVEACRFAYLHDKEEEEQVELPIFLLNLVNG 59

Query: 56  TLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAK 112
            ++    +D  +   L    +L R     + +LR+ + ++L Y +      V+ A+E AK
Sbjct: 60  VMQSKSVLDDKITQYLKAGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAIELAK 119

Query: 113 RDKENRHFA 121
           +  + +   
Sbjct: 120 KFSDEKSSK 128


>gi|254293744|ref|YP_003059767.1| NusB antitermination factor [Hirschia baltica ATCC 49814]
 gi|254042275|gb|ACT59070.1| NusB antitermination factor [Hirschia baltica ATCC 49814]
          Length = 163

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ARL +   L  + +   +   +++         D   R +   D  + R  V   +  L 
Sbjct: 23  ARLAAVQALYQIEQTGRAGRAVIEDYCEDGIGLDDEGRPIEAADPEIFRNTVEGVIESLD 82

Query: 62  RID-AVLDFVLI-SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
            I+ A++  +     + R   + + +LR  V +++   D+    ++D  V  A    ++ 
Sbjct: 83  DINLAIVKRLADGWKIERLDATSRAILRAGVYELMKRDDLPAQIILDEYVSIAHAFFDDA 142

Query: 119 HFAKLVNSILRR 130
              + +N++L  
Sbjct: 143 E-PRFINALLEN 153


>gi|302847922|ref|XP_002955494.1| hypothetical protein VOLCADRAFT_43107 [Volvox carteri f.
           nagariensis]
 gi|300259117|gb|EFJ43347.1| hypothetical protein VOLCADRAFT_43107 [Volvox carteri f.
           nagariensis]
          Length = 152

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLE 277
           G   +Q+  + +            VLD+CAAPGGKT    Q++ +  ++ ALD S  ++ 
Sbjct: 1   GWVMLQNLPSVVAALALCPPPGSRVLDMCAAPGGKTTLLAQIMGNLGEIVALDRSHAKVS 60

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           ++R     +     +  E         P + FD +L+DAPCS+ G     P +       
Sbjct: 61  EIRSLTGEMGATCVEDGEGSPRPAPSFPPEYFDHILLDAPCSALGL---RPRLQQQSSAA 117

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
            + +    QR+L    +  ++ GG +V+S C+++ 
Sbjct: 118 YLRQCGAAQRRLGDAAVRLLRTGGSLVYSTCTINP 152


>gi|327293461|ref|XP_003231427.1| hypothetical protein TERG_08212 [Trichophyton rubrum CBS 118892]
 gi|326466543|gb|EGD91996.1| hypothetical protein TERG_08212 [Trichophyton rubrum CBS 118892]
          Length = 527

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 81/478 (16%), Positives = 140/478 (29%), Gaps = 95/478 (19%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106
             + A++    ++   I  V+D   I +   K   +  LL V    +    +A  +  + 
Sbjct: 34  AQIYALIVEVAKYNECIKEVIDNAGILAHESKLTPVLSLLLVHDFLLSKRGIAAPS--NH 91

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166
            +  A    ++R  ++L    +RR    K EL  ++     + + F  R          L
Sbjct: 92  PLRLAVERHKSRLNSELTKLRVRRGCASKEELKHKLVQDQQVMKTFSPRWIRINNVLTTL 151

Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWW 224
                     Y  ++   ++           L      L  +   I   S   + EG   
Sbjct: 152 DREMKSTFAGYESVSSLSELAEAIADEKKYCLDEHIPDLMAISRDIDITSSYAYKEGRLI 211

Query: 225 VQDASASIPVQLFGTLNNLSV----LDLCAAPGGKTAQL--------IVSGAKVTALDVS 272
           +QD ++  P  L    +        +D CAAPG KT  L            ++V +LD S
Sbjct: 212 LQDKASCFPAYLLLGDHPGRWKGDLIDGCAAPGNKTTHLASLLSSAPEKQKSRVFSLDAS 271

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------VDAPCSSTGTIRRHP 326
             R + L+  + +        +                       +D  CS +G  +R  
Sbjct: 272 HSRSKILQTMVKKAGASNIVTVLPGQDFLALDPTDTRFQHVTALLLDPSCSGSGITKRED 331

Query: 327 D----------------------VLWTRDTDDI----------------------VKSAC 342
                                      +   +                        K A 
Sbjct: 332 VPQLDLPKSKSELTLATTAGGKGSKNRKRKRENPADSSSPGSPTTEAKEDESERLAKLAN 391

Query: 343 FQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVL-----RSSPIPVELVP---- 392
            Q +++     FV P    V +S CS+  +++E+VV +VL     +S    +EL      
Sbjct: 392 LQSQIVEHA--FVFPAATRVTYSTCSIHHEENEDVVARVLASSIAKSRGWRLELRSEQAR 449

Query: 393 ----------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     L     +S         E  IR  P           G  GFF     R
Sbjct: 450 GLRNWHHRGILPDGTSESPPQLSPEQVEACIRCWP-------AGDEGTGGFFVAIFVR 500


>gi|327330421|gb|EGE72170.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL097PA1]
          Length = 261

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +  +L            +L      +   + +   +     +V        
Sbjct: 37  STRSKARKQALDILFEADLIGTDPLEVLA-----ARPGVFTNPVRPFAADLVRGVAATQV 91

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +D+VL   L    +L R     + L R+   +IL+ D  + AV+  A+E ++    +  
Sbjct: 92  GLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEFSTDDS 151

Query: 120 FA 121
             
Sbjct: 152 AP 153


>gi|223041028|ref|ZP_03611286.1| transcription antitermination factor NusB [Campylobacter rectus
           RM3267]
 gi|222877700|gb|EEF12823.1| transcription antitermination factor NusB [Campylobacter rectus
           RM3267]
          Length = 131

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 6/130 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +    R     LL        S     +        + +    + L  ++ +  L   
Sbjct: 1   MATRHQVRQAVVSLLYAREMGSCSE----EFVEEFLEEKKIRNDQRSLALSLFHGILEHA 56

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +DA+L+  L    +       + +LR+   ++ +       +++  +E  K       
Sbjct: 57  DGLDALLNARLKEWKINEIGSIERAVLRLGAYEMKFTPTDKAVIINEGIELGKE-LGGDS 115

Query: 120 FAKLVNSILR 129
             K +N +L 
Sbjct: 116 APKFINGVLD 125


>gi|50842668|ref|YP_055895.1| putative NusB-family protein [Propionibacterium acnes KPA171202]
 gi|289425085|ref|ZP_06426862.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK187]
 gi|289428561|ref|ZP_06430245.1| transcription antitermination factor NusB [Propionibacterium acnes
           J165]
 gi|295130747|ref|YP_003581410.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK137]
 gi|81611678|sp|Q6A8H8|NUSB_PROAC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|50840270|gb|AAT82937.1| putative NusB-family protein [Propionibacterium acnes KPA171202]
 gi|289154063|gb|EFD02751.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK187]
 gi|289158255|gb|EFD06474.1| transcription antitermination factor NusB [Propionibacterium acnes
           J165]
 gi|291375576|gb|ADD99430.1| transcription antitermination factor NusB [Propionibacterium acnes
           SK137]
 gi|313764289|gb|EFS35653.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL013PA1]
 gi|313771992|gb|EFS37958.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL074PA1]
 gi|313791976|gb|EFS40077.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA1]
 gi|313802074|gb|EFS43308.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL110PA2]
 gi|313807685|gb|EFS46172.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA2]
 gi|313810192|gb|EFS47913.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL083PA1]
 gi|313812780|gb|EFS50494.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL025PA1]
 gi|313816197|gb|EFS53911.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL059PA1]
 gi|313818722|gb|EFS56436.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL046PA2]
 gi|313820492|gb|EFS58206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA1]
 gi|313822702|gb|EFS60416.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA2]
 gi|313825364|gb|EFS63078.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL063PA1]
 gi|313827660|gb|EFS65374.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL063PA2]
 gi|313830523|gb|EFS68237.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL007PA1]
 gi|313833559|gb|EFS71273.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL056PA1]
 gi|313838895|gb|EFS76609.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL086PA1]
 gi|314915279|gb|EFS79110.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA4]
 gi|314918171|gb|EFS82002.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA1]
 gi|314920247|gb|EFS84078.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL050PA3]
 gi|314925034|gb|EFS88865.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL036PA3]
 gi|314931770|gb|EFS95601.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL067PA1]
 gi|314955572|gb|EFS99973.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL027PA1]
 gi|314958067|gb|EFT02170.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA1]
 gi|314960362|gb|EFT04464.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA2]
 gi|314962632|gb|EFT06732.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL082PA1]
 gi|314967503|gb|EFT11602.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL037PA1]
 gi|314973523|gb|EFT17619.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL053PA1]
 gi|314976203|gb|EFT20298.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL045PA1]
 gi|314978636|gb|EFT22730.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL072PA2]
 gi|314983775|gb|EFT27867.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA1]
 gi|314987956|gb|EFT32047.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA2]
 gi|314989766|gb|EFT33857.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL005PA3]
 gi|315077848|gb|EFT49899.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL053PA2]
 gi|315080473|gb|EFT52449.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL078PA1]
 gi|315084144|gb|EFT56120.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL027PA2]
 gi|315085487|gb|EFT57463.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL002PA3]
 gi|315088456|gb|EFT60432.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL072PA1]
 gi|315096070|gb|EFT68046.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL038PA1]
 gi|315098699|gb|EFT70675.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL059PA2]
 gi|315101532|gb|EFT73508.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL046PA1]
 gi|315105759|gb|EFT77735.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL030PA1]
 gi|327326350|gb|EGE68140.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL096PA2]
 gi|327331775|gb|EGE73512.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL096PA3]
 gi|327443552|gb|EGE90206.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL013PA2]
 gi|327445756|gb|EGE92410.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL043PA2]
 gi|327448261|gb|EGE94915.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL043PA1]
 gi|327450617|gb|EGE97271.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA3]
 gi|327453305|gb|EGE99959.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL092PA1]
 gi|327454045|gb|EGF00700.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL083PA2]
 gi|328753303|gb|EGF66919.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL025PA2]
 gi|328754035|gb|EGF67651.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL087PA1]
 gi|328754763|gb|EGF68379.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL020PA1]
 gi|328760688|gb|EGF74254.1| n utilization substance protein B-like protein [Propionibacterium
           acnes HL099PA1]
 gi|332675591|gb|AEE72407.1| N utilization substance protein B [Propionibacterium acnes 266]
          Length = 261

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +  +L            +L      +   + +   +     +V        
Sbjct: 37  STRSKARKQALDILFEADLIGTDPLEVLA-----ARPGVFTNPVRPFAADLVRGVAATQV 91

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +D+VL   L    +L R     + L R+   +IL+ D  + AV+  A+E ++    +  
Sbjct: 92  GLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEFSTDDS 151

Query: 120 FA 121
             
Sbjct: 152 AP 153


>gi|163840712|ref|YP_001625117.1| transcription antitermination factor [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954188|gb|ABY23703.1| transcription antitermination factor [Renibacterium salmoninarum
           ATCC 33209]
          Length = 143

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +  +L    ++ +S   +L     +   ++++         I++   +   
Sbjct: 9   SARSKARRRALDILFEAGQRDVSAAEVL-KLRRERTDQIINP----YSVDIIDGVGQKQE 63

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            ID  L       +L R        LR+   ++LY  DV D   V  AVE AK+      
Sbjct: 64  EIDEFLQTYAQGWTLERMPAVDLIALRIGAWELLYNDDVPDAVAVSEAVELAKQ-LSTDE 122

Query: 120 FAKLVNSILRRVSR 133
             + +N +L R+ +
Sbjct: 123 SPQFINGLLGRLQQ 136


>gi|319404314|emb|CBI77907.1| N utilization substance protein B [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 156

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +    I    ++         + +        D    R+I+   
Sbjct: 14  NKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDGNQYLDADFQWFRSIIVGV 73

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           +R   ++D +L   L    +L R   +L+ +LR  + +++    +    +++  ++ AK 
Sbjct: 74  VRDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKGMPIAVILNEYIDIAKA 133

Query: 114 DKENRHFAKLVNSILRRVSREKIE 137
             +N    +LVN++L  +++E  +
Sbjct: 134 FFDNDE-PRLVNAVLDSIAKEMCQ 156


>gi|169824540|ref|YP_001692151.1| transcription terminator [Finegoldia magna ATCC 29328]
 gi|297588522|ref|ZP_06947165.1| transcription antitermination factor NusB [Finegoldia magna ATCC
           53516]
 gi|303233660|ref|ZP_07320314.1| transcription antitermination factor NusB [Finegoldia magna
           BVS033A4]
 gi|238687751|sp|B0S1M1|NUSB_FINM2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167831345|dbj|BAG08261.1| transcription terminator [Finegoldia magna ATCC 29328]
 gi|297573895|gb|EFH92616.1| transcription antitermination factor NusB [Finegoldia magna ATCC
           53516]
 gi|302495094|gb|EFL54846.1| transcription antitermination factor NusB [Finegoldia magna
           BVS033A4]
          Length = 137

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R  +  L+  +          ++       ++ +++ D    + IV   +  +  
Sbjct: 2   SRRQSRKSAMQLIYEMNMNGDYDKQRIEEFCK---YQNINKNDIEFFKEIVLNFIEHIDD 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           I  +++      +L R       +L+V V +ILY++   D   ++ AVE AK     + +
Sbjct: 59  IVNIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSY 118

Query: 121 A 121
           +
Sbjct: 119 S 119


>gi|299768336|ref|YP_003730362.1| transcription antitermination protein NusB [Acinetobacter sp. DR1]
 gi|298698424|gb|ADI88989.1| transcription antitermination protein NusB [Acinetobacter sp. DR1]
          Length = 149

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +         +  +      ++A   +   D      ++   +     +DA+L  V
Sbjct: 19  AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIALRDDLDALLIPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   L          LR+   ++  +L+V    V+D A+E AK         K +N +L 
Sbjct: 76  LDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|84496669|ref|ZP_00995523.1| NusB antitermination factor [Janibacter sp. HTCC2649]
 gi|84383437|gb|EAP99318.1| NusB antitermination factor [Janibacter sp. HTCC2649]
          Length = 136

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-AFRLLSQRDQILVRAIVNVTLRF 59
           M +   +R  +  LL    +++++ T LL            L++        +V   +  
Sbjct: 1   MGARTKSRRRAIDLLFEAEQRQVNATELLKERLATPVTEAPLNE----FTANLVTGVVDN 56

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD 100
             +I+ +L       S+ R     + +LRV   ++L+ +V +
Sbjct: 57  WSQINDLLATYSQGWSVERMPAVDRAILRVGAFEVLFGEVPE 98


>gi|315108679|gb|EFT80655.1| transcription antitermination factor NusB [Propionibacterium acnes
           HL030PA2]
          Length = 261

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +  +L            +L      +   + +   +     +V        
Sbjct: 37  STRSKARKQALDILFEADLIGTDPLEVLA-----ARPGVFTNPVRPFAADLVRGVAATQV 91

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +D+VL   L    +L R     + L R+ V +IL+ D  + AV+  A+E ++    +  
Sbjct: 92  GLDSVLTDCLSEGWTLARMPRVDRILARLGVFEILHTDTPNPAVISEAIELSEEFSTDDS 151

Query: 120 FA 121
             
Sbjct: 152 AP 153


>gi|332288213|ref|YP_004419065.1| transcription antitermination protein NusB [Gallibacterium anatis
           UMN179]
 gi|330431109|gb|AEC16168.1| transcription antitermination protein NusB [Gallibacterium anatis
           UMN179]
          Length = 145

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L      + S   +   E            D +  R + N T+  L 
Sbjct: 12  SKRRRARECTVQALYSWFISKNSPESI---ELDLVTNDETKGADVVYFRKLFNGTVNNLD 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            ++      L   +       + +L  +  ++ Y  D+    V++ A+E AK        
Sbjct: 69  NLEQEYASFLDRKIEELGTIERAILDCATFELKYVDDIPYKVVINEAIEVAKTF-GASDS 127

Query: 121 AKLVNSILRR 130
            K +NSIL +
Sbjct: 128 HKYINSILDK 137


>gi|150020739|ref|YP_001306093.1| transcription antitermination protein NusB [Thermosipho
           melanesiensis BI429]
 gi|166215726|sp|A6LLA7|NUSB_THEM4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|149793260|gb|ABR30708.1| NusB antitermination factor [Thermosipho melanesiensis BI429]
          Length = 141

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           KS    R      L      +     +L+    +     L    Q L    +      + 
Sbjct: 3   KSRHKMREAIFKSLFQWDFNK---EEILEEISKEH-IVSLEPNLQELAVNYLKGIRENID 58

Query: 62  RIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            ID ++   L + +L R   + + +LR+   +++Y  D+     +D  +E  K      +
Sbjct: 59  VIDEIISKYLKNWTLERLSVTDRNILRLGTYELIYVDDIPIEVTLDEMIELGKTY-GTEN 117

Query: 120 FAKLVNSILRR 130
             K VN +L +
Sbjct: 118 SGKFVNGVLDK 128


>gi|256827876|ref|YP_003156604.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
 gi|256577052|gb|ACU88188.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
          Length = 154

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 5/126 (3%)

Query: 8   RLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRIDA 65
           R  +  ++   V  +++S   L+              +R       +V         ID 
Sbjct: 9   RRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQDSYAWTLVEGVFDNYDSIDE 68

Query: 66  VLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
           ++        L R       +LR+S+ ++L+  D+     ++ A+E AK D  + +    
Sbjct: 69  IITQHSQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEAIELAK-DFGDDNSKTF 127

Query: 124 VNSILR 129
           VN +L 
Sbjct: 128 VNGVLD 133


>gi|311259386|ref|XP_003128070.1| PREDICTED: putative methyltransferase NSUN4-like [Sus scrofa]
          Length = 383

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 101/298 (33%), Gaps = 31/298 (10%)

Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY---------GK 162
           ++  + +  A        R++ +  ++   +    + P      L               
Sbjct: 24  RQRHKKKWAATEPKFPATRLALQNFDMTYSMQFGDLWPSIRVSLLSEQKYGALVNNFAAW 83

Query: 163 ERVLAISDACISPLYI-----DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217
           + V    +   +  ++         + +    A    A                +   P 
Sbjct: 84  DHVSTELEQLNAKDFVNEAAFRGEPEPEDGQAAAPPAAWSCSPNLRCFTFTRGDVSRFPP 143

Query: 218 FAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALD 270
              G      +++ DA++ +PV   G     +VLDLCAAPGGKT  ++ +G    + A D
Sbjct: 144 ARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLAMLQTGCCRNLAAND 203

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST--G 320
           +S  R  +L   L                     + +        D VLVD PC++    
Sbjct: 204 LSTSRTGRLLKVLHSYVPQDVRERNRVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHS 263

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
                 ++       +       Q +LL  G+   KPGG VV+S CSL    +E VVQ
Sbjct: 264 LHEEENNIFQRSRKRERQMLPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQ 321


>gi|23296076|gb|AAN12293.1| transcription termination factor [Aquifex pyrophilus]
          Length = 144

 Score = 73.0 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+   +AR  +  +L     +    + +      +   +  +  +    + +V  T+  +
Sbjct: 1   MRYRKSARDTAFLVLYRWDLRGDKPSEIFKEVVEEKNIQNKNTYE--YAKKLVETTVNNI 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             IDA+++  L   S+ R  Y  +  LR+ VA++L+L   +   V + +    +   +  
Sbjct: 59  SEIDAIIEKHLKGWSIDRLGYVERNALRLGVAELLFLKSQEPGRVFIDIIDIVKKFTDEK 118

Query: 120 FAKLVNSILRRVSREK 135
            AK VN +L  + R  
Sbjct: 119 AAKFVNGVLSAIYRSF 134


>gi|307178234|gb|EFN67019.1| Putative methyltransferase NSUN4 [Camponotus floridanus]
          Length = 459

 Score = 73.0 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 10/171 (5%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLR 280
           +++ D ++ +PV         ++LD+CAAPGGKT   + +     + A DVS+ R++K+ 
Sbjct: 277 YYLLDGASVLPVLALDLQPGDAMLDMCAAPGGKTLSALQTLLPHTIVANDVSQSRVKKIH 336

Query: 281 CNLDRLHLYA------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTR 332
             +D+             +   DA     K L++ +LVD PC++        + ++   +
Sbjct: 337 NVIDQFVADIGQWQDRLHVTGRDARYIDDKDLYNKILVDVPCTTDRHVLHSDNNNIFKPQ 396

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
              + ++    Q  +L   +  +  GG VV+S CSL    ++ VV   L+ 
Sbjct: 397 RIRERLQIPELQAAILTNALKIISVGGTVVYSTCSLSPIQNDGVVGMALKK 447


>gi|301345751|ref|ZP_07226492.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB056]
 gi|301512968|ref|ZP_07238205.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB058]
 gi|301596175|ref|ZP_07241183.1| transcription antitermination protein NusB [Acinetobacter baumannii
           AB059]
          Length = 135

 Score = 73.0 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +         +  +      ++A   +   D      ++   +     +DA+L  V
Sbjct: 19  AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQHEDLDALLIPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   +          LR+   ++  +L++    V+D A+E AK         K +N +L 
Sbjct: 76  LDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|319939911|ref|ZP_08014266.1| transcription antitermination protein NusB [Streptococcus anginosus
           1_2_62CV]
 gi|319810922|gb|EFW07241.1| transcription antitermination protein NusB [Streptococcus anginosus
           1_2_62CV]
          Length = 141

 Score = 73.0 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 4/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           +    R  +   L  +  ++  +         D      S  +    +  +V    +   
Sbjct: 8   ARRELRERAFQALMSLEYEKDIVEACRFAYLYDKDMTNDSDVELPAFLLNLVMGVEQSKN 67

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +D  L   L    +L R     + +LR+ + ++   D      ++ A+E +K+   +  
Sbjct: 68  ELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFDTPQLVAINEAIELSKKF-SDEK 126

Query: 120 FAKLVNSILRRV 131
            +K +N IL + 
Sbjct: 127 SSKFINGILSKF 138


>gi|224531581|ref|ZP_03672213.1| transcription antitermination factor NusB [Borrelia valaisiana
           VS116]
 gi|224511046|gb|EEF81452.1| transcription antitermination factor NusB [Borrelia valaisiana
           VS116]
          Length = 145

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 59/142 (41%), Gaps = 5/142 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRF 59
           M      R+++   +  +   + ++  + D+   +     +  +  +    ++VN T   
Sbjct: 1   MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVNGTFNN 60

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116
           L  ID ++  + L  SL R       +LR+ V  + + +  +    V+D A+  AK+   
Sbjct: 61  LEHIDNLIRDISLNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAKKY-G 119

Query: 117 NRHFAKLVNSILRRVSREKIEL 138
           +++  K +N IL  + +     
Sbjct: 120 SKNSYKFINGILDALLKNMENC 141


>gi|296207856|ref|XP_002750820.1| PREDICTED: putative methyltransferase NSUN4 [Callithrix jacchus]
          Length = 384

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 94/268 (35%), Gaps = 29/268 (10%)

Query: 197 MLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                          +   P           +++ DA++ +PV   G      VLDLCAA
Sbjct: 124 ACSPNLRCFTFAKGDVSRFPPARPSNLGVMDYYLMDAASLLPVLALGLQPGDIVLDLCAA 183

Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307
           PGGKT  L+ +G    + + D+S  R+ +L+  L                     + +  
Sbjct: 184 PGGKTLALLQTGCCRNLASNDLSTSRIARLQKILHSYVPQEIRDGNQVRVTSWDGRKWGE 243

Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                 D VLVD PC++          ++       +       Q +LL  G+   KPGG
Sbjct: 244 LEGDTFDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQMLPLLQVQLLAAGLLATKPGG 303

Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414
            VV+S CSL    +E VVQ  +        I V++  L       +D      S E    
Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRLFMDTFCFFSSCEVGEL 363

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           + P++              +   + RL 
Sbjct: 364 VIPNLTANFGP-------MYFCKMCRLT 384


>gi|78188395|ref|YP_378733.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3]
 gi|119390755|sp|Q3ATI5|NUSB_CHLCH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78170594|gb|ABB27690.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3]
          Length = 169

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 5/136 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  V  + I+L         +                +++     
Sbjct: 1   MKTYRRQIREKILQALYTVELRGITLDEAAGWLLTEEILA--DPNAMKFFNLLLSSIKAH 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +        + R     + ++R+++ +ILY  D+     ++ A+E AK+    
Sbjct: 59  REEIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNST 118

Query: 118 RHFAKLVNSILRRVSR 133
              +K VN IL  +  
Sbjct: 119 DKSSKFVNGILDAIFN 134


>gi|226502218|ref|NP_001150625.1| NOL1/NOP2/sun family protein [Zea mays]
 gi|195640662|gb|ACG39799.1| NOL1/NOP2/sun family protein [Zea mays]
 gi|219884197|gb|ACL52473.1| unknown [Zea mays]
          Length = 408

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDI--------VKSACF 343
           +      D      +D VLVDA C+  G+I+       W   + D               
Sbjct: 261 VFCPSVDDEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKSLDRRVLDAERTENLLQL 320

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
           Q  LL  G   +K GG +V+S CSL    +E VVQ+ L + P         +  W     
Sbjct: 321 QLHLLTNGFKLLKTGGSLVYSTCSLTVAQNECVVQQFLSTHPSADLQKINLADNWPCRSG 380

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443
            +  +    +R  P + +          G F     +L  
Sbjct: 381 GIPKT----LRFDPAVSQTS--------GLFVAKFCKLPT 408


>gi|42522647|ref|NP_968027.1| transcription termination factor nusB [Bdellovibrio bacteriovorus
           HD100]
 gi|81617954|sp|Q6MNX9|NUSB_BDEBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39575179|emb|CAE79020.1| transcription termination factor nusB [Bdellovibrio bacteriovorus
           HD100]
          Length = 135

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  +   AR ++  +L            +    + +   + L          IV     
Sbjct: 1   MKLTARRQARELALQVLFQTE----FAPQISYQTFLEVFEQSLDPEVITYADLIVTGVKS 56

Query: 59  FLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDK 115
               ID+ +        + R     + +LR++V ++ +    + +   ++ AVE AK+  
Sbjct: 57  NKEAIDSKIQASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEIAKKY- 115

Query: 116 ENRHFAKLVNSILRRVSREK 135
                   VN +L +V +  
Sbjct: 116 GTSDSGSFVNGLLDQVGKAH 135


>gi|229815218|ref|ZP_04445554.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM
           13280]
 gi|229809228|gb|EEP44994.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM
           13280]
          Length = 216

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 21/217 (9%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  +L     +++S+  +L  +Y  S   L           I         RI
Sbjct: 10  RTLARSQALQILFQSEMRKVSVEDVLAGDYTLSKGPL-----APYAIEIARGVSANRDRI 64

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL--DV-ADYAVVDLAVEQAKRDKENRH 119
           D+ L  V  + +L R   + + LLR +V ++ +   D      V++ AVE AK       
Sbjct: 65  DSALRAVSANWTLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAY-GTDE 123

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
            A  VN +L R+ R++            +P                  ++          
Sbjct: 124 SAGFVNGVLGRIVRDR-----------HLPSLQHVACTITAEDAEAACLAALWFEIDPKR 172

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
           L  + +    A +  A          ++  + I + P
Sbjct: 173 LAAEEEAARAAEEARARFEADDYGFAEDDLDHIFNDP 209


>gi|126733189|ref|ZP_01748936.1| putative N utilization substance protein B [Roseobacter sp. CCS2]
 gi|126716055|gb|EBA12919.1| putative N utilization substance protein B [Roseobacter sp. CCS2]
          Length = 159

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   ARL +   L  +     ++  +                 +++ D    RA++  
Sbjct: 11  MKS--AARLYAVQALFQMEASGQTVDQVTREFEDHRLGAVYDEGEMTEGDVDTFRALMEK 68

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +     ID + D  L     + R   + + L R + A++   D     V+   V  A+ 
Sbjct: 69  AVDDQAAIDQLTDRALVAKWPIARIDPTWRALFRAAGAELTLQDTPPKVVISEFVSVAEA 128

Query: 114 DKENRHFAKLVNSILRRV 131
              +    K VN++L  +
Sbjct: 129 FSADGKEPKFVNAVLDHM 146


>gi|149008214|ref|ZP_01831709.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126646|ref|YP_003878677.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           670-6B]
 gi|147760358|gb|EDK67339.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483708|gb|ADM90577.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           670-6B]
 gi|332076876|gb|EGI87338.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA17545]
          Length = 140

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 8   SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDR-EYTDVQLPAFLIDLVSGVQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 66  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|313215201|emb|CBY42870.1| unnamed protein product [Oikopleura dioica]
          Length = 448

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 36/219 (16%)

Query: 246 LDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           LD+CAAPGGKTA     +S  K  A D    R+E L+ N  ++     +II  D+     
Sbjct: 243 LDMCAAPGGKTAYLLNRLSNDKWYAADK-PSRVEMLKKNTSKI-ETNVEIIAGDSTKMNF 300

Query: 304 KK---------LFDAVLVDAPCS------------STGTIRRHPDVLWTRDTDDIVKSAC 342
           K            D +L++   S             + T  R   V        I     
Sbjct: 301 KNEKFDGILLERVDKILLETLPSSLKFSTRISDAPCSATGSRPKPVNLHISERQISSYQK 360

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402
            QRKL+ + +  +KPGG++ +S CS+  ++++E  + +     + +      + + +  +
Sbjct: 361 LQRKLIAEAVRLLKPGGVLCYSTCSVRAEENQENTKLIESKYGLQLLEENSFNPFSEKSE 420

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +   ++     RI      ++        G++   L++L
Sbjct: 421 LIGGIN-----RI------EVVDPLEDTIGYYCACLKKL 448


>gi|251778082|ref|ZP_04821002.1| transcription antitermination factor NusB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082397|gb|EES48287.1| transcription antitermination factor NusB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 133

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + +R  +  LL  +     +    L+    +     + + D   ++ I+       
Sbjct: 1   MNRKL-SREKAMELLFGMTLNTDNCEETLENFIDNYE-SDIKELDITYIKRILIGVENNK 58

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  +   L    + R       +LR++V ++L+  ++ +   ++ A+E  K+  + +
Sbjct: 59  DNIDEAISKNLCNWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEK 118

Query: 119 HFAKLVNSILRR 130
             +  +N +L  
Sbjct: 119 SVS-FINGVLDN 129


>gi|50086525|ref|YP_048035.1| transcription antitermination protein NusB [Acinetobacter sp. ADP1]
 gi|81612974|sp|Q6F6V2|NUSB_ACIAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49532501|emb|CAG70213.1| transcription termination, L factor (N utilization substance
           protein B) [Acinetobacter sp. ADP1]
          Length = 149

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +      R  +  +      ++A   +   D      ++   +     +D +L  V
Sbjct: 19  AVQGIYEWQMSRNPVHEIEARTRVENAMHKV---DLGYYHELLTQVVAQHETLDTLLVPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   L          LR+   ++  +L++    V+D A+E AK         K +N +L 
Sbjct: 76  LDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|119356339|ref|YP_910983.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266]
 gi|166215679|sp|A1BDT2|NUSB_CHLPD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|119353688|gb|ABL64559.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266]
          Length = 165

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 5/136 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +  +   +    +                     ++      
Sbjct: 1   MKTYRRQIREKILQALYTLELRDTDIESAANWLLTKEIQE--DPNAMKFFNLLLKNIKEH 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +        + R     + +LR+++A++LY  D+     ++ A+E AK+    
Sbjct: 59  REEIDQYIARHTFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFSST 118

Query: 118 RHFAKLVNSILRRVSR 133
              +K VN IL  +  
Sbjct: 119 DKSSKFVNGILDAIFN 134


>gi|332021457|gb|EGI61825.1| Putative methyltransferase NSUN4 [Acromyrmex echinatior]
          Length = 507

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLR 280
           +++ D ++ +PV         +VLD+CAAPGGKT           + A D+ K R++++ 
Sbjct: 279 YYLLDGASVLPVLALDLQPGDAVLDMCAAPGGKTLSILQTFMPNIMVANDIQKSRVDRIN 338

Query: 281 CNLDRLHL------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTR 332
             +++             + E DA     K +++ +LVD PC++          ++   +
Sbjct: 339 KVINQYTAGIGQWEDRLRVTERDARFIDDKDMYNKILVDVPCTTDRHVLHSEENNMFKPQ 398

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              + +K    Q  +L   +  +  GG VV+S CSL    ++ VV   L+        + 
Sbjct: 399 RIRERLKLPELQAAILTNALKIISVGGTVVYSTCSLSPIQNDGVVGMALKKVWEETNFIM 458

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG-FFAVALRR 440
           +     +++     L   G   +                G  +   + R
Sbjct: 459 IVKDMSEALSPLKCLYKFGNFGL--KYGHIAIPTLQNNWGPMYFCKIVR 505


>gi|168485566|ref|ZP_02710074.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571084|gb|EDT91612.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           CDC1087-00]
          Length = 140

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +    ++       Y          +    +  +V+        
Sbjct: 8   SRRQLRKCAFQALMS-LEFGTNVETACRFAYTHDREDT-DVQLPAFLIDLVSGIQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 66  LDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|118617385|ref|YP_905717.1| transcription antitermination protein NusB [Mycobacterium ulcerans
           Agy99]
 gi|118569495|gb|ABL04246.1| N utilization substance protein NusB [Mycobacterium ulcerans Agy99]
          Length = 173

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR  +  L+     + +    + DL    +  +           A+         
Sbjct: 11  KGRHQARKRAVDLMFEAEARGLGPGEIADLRTELAETKPDVAPLHPYTAAVARGIGEHAA 70

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            ID ++   L   +L R     + +LRV+V ++LY  DV +   VD AVE AK    +  
Sbjct: 71  HIDDLITSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVELAKELSTDDS 130

Query: 120 FA 121
            +
Sbjct: 131 PS 132


>gi|171685978|ref|XP_001907930.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942950|emb|CAP68603.1| unnamed protein product [Podospora anserina S mat+]
          Length = 605

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/471 (14%), Positives = 128/471 (27%), Gaps = 83/471 (17%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLD--FVLISSLPRKKYSLQQLLRVSVAQILYLDV--ADYA 102
             V A+   T ++   +  V++   +L     RK   +  +L V    +    +      
Sbjct: 36  AQVYALALETCKWSSVLKEVVENAELLKH--ERKLTPILSILLVHDHLLAKGGIALPASH 93

Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162
            +  ++++ K    +      +      +   +  +    AG    P W +         
Sbjct: 94  GLRQSIDRHKARLTSEFTKARIRRKCPTIETFRDLIEAEYAGPVQHPRWIRVNAIKSTLD 153

Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222
            ++            I   +    +     L         I +            + +G 
Sbjct: 154 AQLETTFKGFEVVPSITQVMTAPRKK--KVLCLDGHIPNLIAVPPSVLDFTKTEAYKKGE 211

Query: 223 WWVQDASASIPVQLFGTLNNL-SVLDLCAAPGGKTAQ--------LIVSGAKVTALDVSK 273
             +QD ++  P  L         ++D C+APG KT              G  + A +  +
Sbjct: 212 IILQDKASCFPAYLLDPRPEDGDIIDACSAPGNKTTHLAGILSERGFARGQTIHAFEKDR 271

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD------AVLVDAPCSSTGTIRRHPD 327
            R + L+  +      A+ ++             +      A+L+D  CS +G + R   
Sbjct: 272 NRAKTLQKMIKIAGSDAKTVVHPAEDFLRADPQAEEYAHVGALLLDPSCSGSGIVGRDDV 331

Query: 328 V---------------------LWTRD------------------------------TDD 336
                                    +                                  
Sbjct: 332 PELCLPEALASKNKPGNGKSGNKKRKRAEGEEEMKPAPAMMVDDDGQETVVSSEKDLQQR 391

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRSS------PIPVE 389
           I   A FQ +++L    F  P    V +S CS+ K ++E V  + L S          + 
Sbjct: 392 IEALAAFQLQIVLHAFEF--PNARKVTYSTCSVHKGENEGVTIRALGSEVARRRGWRVLR 449

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   W+          EG   +    +        G  GFF V   R
Sbjct: 450 REEQVRGMWEWDVRGEVEGCEGDKEVAEGCVRAFRDDGRGTMGFFVVMFVR 500


>gi|164662793|ref|XP_001732518.1| hypothetical protein MGL_0293 [Malassezia globosa CBS 7966]
 gi|159106421|gb|EDP45304.1| hypothetical protein MGL_0293 [Malassezia globosa CBS 7966]
          Length = 382

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 307 FDAVLVDAPCSSTGTIRRHP----------DVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           +D +L+DAPCSS   I                +           +  Q  LL    + ++
Sbjct: 245 YDRILLDAPCSSERHILHAYMRAQQSGTAAPEMLAWKPTMSRSMSKTQLALLRTAWAALR 304

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
           PGG +V++ CSL +Q+++ VV+  L S+P    L
Sbjct: 305 PGGRLVYATCSLSEQENDHVVRAFLTSTPEAHVL 338


>gi|149928254|ref|ZP_01916498.1| transcription antitermination protein NusB [Limnobacter sp. MED105]
 gi|149823060|gb|EDM82301.1| transcription antitermination protein NusB [Limnobacter sp. MED105]
          Length = 162

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++   L         +  +         F    + D+    ++++ ++  L  +   
Sbjct: 23  SRELALQGLYQWFLNPTEVGEVDAHIRDAPGF---DKADREHYESLLHGSVHHLEDLMHQ 79

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +   +           + +L ++  ++  + ++    V++ AVE  K       F 
Sbjct: 80  IQPFIDRPWGELSPVEKAVLVLASHEMNTHAEIPYRVVINEAVELTKTFGGTDAFK 135


>gi|241758553|ref|ZP_04756670.1| transcription antitermination factor NusB [Neisseria flavescens
           SK114]
 gi|241321296|gb|EER57456.1| transcription antitermination factor NusB [Neisseria flavescens
           SK114]
          Length = 142

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR ++   +      + +   +    +  S    + +    L   +   T   
Sbjct: 1   MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNMDEE---LFNKLFFGTQTH 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L V+  ++  + +     +++ A+E  K      
Sbjct: 58  AEEYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFA 121
              
Sbjct: 118 GHK 120


>gi|303278784|ref|XP_003058685.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459845|gb|EEH57140.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 676

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           +DAVL D PCS  GT+R+ PDVL              Q  +  +  +  +PGG  ++S C
Sbjct: 335 YDAVLADVPCSGDGTLRKDPDVLRRWHPGLGNALHQTQLAIASRAAALTRPGGYFLYSTC 394

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
           +L+  + E VV  VL       E   +   +     +      EG +R  
Sbjct: 395 ALNPVEDEAVVASVLL--GPGGERFEIVDGFMDDAGLQKMRRREG-VRTW 441


>gi|294648615|ref|ZP_06726078.1| transcription antitermination protein NusB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825491|gb|EFF84231.1| transcription antitermination protein NusB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 149

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +      +  +  +      ++A   +   D      ++   +     +D +L  V
Sbjct: 19  AVQGIYEWQMSQNPVHEIEARTRVENAMHKV---DLNYYHELLTQVVAQHEALDELLVPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   L          LR+   ++  +L+V    V+D A+E AK         K +N +L 
Sbjct: 76  LDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|213583914|ref|ZP_03365740.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 68

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1  MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
          MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L++ +    LR L
Sbjct: 1  MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55

Query: 61 PRIDAVLDFVLIS 73
           +++ +++ ++  
Sbjct: 56 SQLEWLINKLMSR 68


>gi|118094603|ref|XP_422449.2| PREDICTED: similar to NOL1/NOP2/Sun domain family 4 protein [Gallus
           gallus]
          Length = 404

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 22/233 (9%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLR 280
           +++ DA++ +PV       +  VLDLCAAPGGK   L+ +GA     A DVS  R ++L 
Sbjct: 178 YYLMDAASLLPVLALNVQPDDFVLDLCAAPGGKMLALLQTGACGHLAANDVSISRTKRLY 237

Query: 281 CNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332
             L+           +    +   +       F  VLVD PC++     +    ++    
Sbjct: 238 HVLNSYIPKEVRETVSVTSHDGRDWGELQGGTFHKVLVDVPCTTDRHSVMEEENNIFHKM 297

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV--LRSSPIPVEL 390
            T +       Q +LL+ GI   KP G VV+S CSL +  +E VV++   +  +   + +
Sbjct: 298 RTKERQMLPMLQLQLLMAGILAAKPEGEVVYSTCSLSQLQNEHVVERAIDIAETQFGITV 357

Query: 391 VPLNSAYWKSIDMAMALSPEGWI---RITPDMLEKIDGVSSGMDGFFAVALRR 440
              + ++++++         G      + P +              +   LRR
Sbjct: 358 HVEDLSHFRTLFQDTFCFFSGCRLGELVLPHLTANFGP-------MYFCKLRR 403


>gi|81428290|ref|YP_395290.1| transcription antitermination protein NusB [Lactobacillus sakei
           subsp. sakei 23K]
 gi|119390779|sp|Q38XV0|NUSB_LACSS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78609932|emb|CAI54979.1| Ribosomal RNA transcription antitermination protein NusB
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 142

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 18/141 (12%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---------ILVRAIV 53
           +    R  +  +L  +     +    L+LE    A   + Q D            +  +V
Sbjct: 5   NRHQIRQAAFQVLFTL-----NANQSLELEDAYQAVLTMDQFDAEEVTPVEVPAYLAFLV 59

Query: 54  NVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQ 110
           +        +DA L   L     L R       +LR+ + ++    +      ++ A+E 
Sbjct: 60  SGVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALEL 119

Query: 111 AKRDKENRHFAKLVNSILRRV 131
           AK+   +      +N +L + 
Sbjct: 120 AKQF-TDDQAKGFINGVLSKF 139


>gi|194333302|ref|YP_002015162.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
 gi|238693314|sp|B4S517|NUSB_PROA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194311120|gb|ACF45515.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
          Length = 168

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 5/137 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+   + R      L  +  +          ++  +       +     + ++   +  
Sbjct: 1   MKAHRRHIREKIVQALYTLDVRDT--DTATAGDWLITPEISKDPKAIRFFKQLLGAIVDN 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
              ID  +        + R     + +LR+++A+ILY  D+     ++ A+E AK+    
Sbjct: 59  REEIDQYISKHTFNWDMSRIAIIDKNILRMAMAEILYFEDIPPKVSINEAIEIAKKFNST 118

Query: 118 RHFAKLVNSILRRVSRE 134
              +K VN IL  V  +
Sbjct: 119 DKSSKFVNGILDAVYND 135


>gi|295396131|ref|ZP_06806314.1| transcription antitermination factor NusB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971072|gb|EFG46964.1| transcription antitermination factor NusB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 134

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             LL     + +    L+ L   D  + L     +   R IV+  +    ++D ++    
Sbjct: 12  LELLFEAEARNLPEAELIKLRENDEEYPL-----RPYSREIVDGVVTHRAQLDELISTYA 66

Query: 72  I-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
              +L R     + +LR+ + +ILY D V D   +D AV  AK    +   A
Sbjct: 67  HGWTLERMPRVDRAVLRIGLWEILYNDEVDDPVAIDEAVTLAKEYSTDDSPA 118


>gi|223939373|ref|ZP_03631252.1| NusB antitermination factor [bacterium Ellin514]
 gi|223891977|gb|EEF58459.1| NusB antitermination factor [bacterium Ellin514]
          Length = 185

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 24/138 (17%)

Query: 1   MKSGMNARLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLL------------------ 41
           M     AR  +   L          L   L+  +       L                  
Sbjct: 20  MGKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGATWGQKVELPAP 79

Query: 42  ---SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-L 96
                  +I    ++   L      DA +     +  L R     + +LR+++ ++L+  
Sbjct: 80  TAEEAAVRIFADPLIRGALEHRDEADAQIKKYAENWDLHRIAAVDRNILRLAIFEMLHRE 139

Query: 97  DVADYAVVDLAVEQAKRD 114
           D+     ++ AV+ AK+ 
Sbjct: 140 DIPPVVSINEAVDIAKKF 157


>gi|163868463|ref|YP_001609672.1| transcription antitermination protein NusB [Bartonella tribocorum
           CIP 105476]
 gi|189035879|sp|A9IVB9|NUSB_BART1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|161018119|emb|CAK01677.1| N utilization substance protein B [Bartonella tribocorum CIP
           105476]
          Length = 156

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +             + +        D     AI+   
Sbjct: 14  NKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQYLDADFQWFLAIITGV 73

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           ++   ++D +L   L    SL R    L+ +LR ++ +++   DV    VV+  V+ AK 
Sbjct: 74  VQDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAALWELINRKDVPVAVVVNEYVDIAKA 133

Query: 114 DKENR 118
             E  
Sbjct: 134 FFEGD 138


>gi|47201296|emb|CAF89287.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 121

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 31/121 (25%)

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI--------------------PVEL 390
            +  +K GG++V+S C++   ++EE V   L++ P                         
Sbjct: 1   AVQLLKKGGVLVYSTCTVTLAENEEQVAWALQTFPCLSLQPQVRRPSQSGTSVIGPSPLC 60

Query: 391 VPLNSAYWKSIDMAMALSPEGWI---RITPDML------EKIDGVSSGMD--GFFAVALR 439
            P              LSPE      R  P++              +  D  GFF     
Sbjct: 61  FPQEPHIGAGGMQGAGLSPEQLRLLQRFRPELSWDQSRAAASLPHRADTDTIGFFIAKFL 120

Query: 440 R 440
           +
Sbjct: 121 K 121


>gi|303255410|ref|ZP_07341476.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS455]
 gi|303259505|ref|ZP_07345482.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP-BS293]
 gi|303262368|ref|ZP_07348311.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264786|ref|ZP_07350703.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS397]
 gi|303266625|ref|ZP_07352510.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS457]
 gi|303268858|ref|ZP_07354645.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS458]
 gi|301801342|emb|CBW34025.1| N utilization substance protein B homolog (NusB protein)
           [Streptococcus pneumoniae INV200]
 gi|302597655|gb|EFL64735.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS455]
 gi|302636467|gb|EFL66959.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639439|gb|EFL69897.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae SP-BS293]
 gi|302641639|gb|EFL71999.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS458]
 gi|302643869|gb|EFL74131.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS457]
 gi|302645653|gb|EFL75883.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae BS397]
          Length = 140

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 8   SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDR-EYTDVQLPAFLIDLVSGVQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      ++ A+E AK D  ++  
Sbjct: 66  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAINEAIELAK-DFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|301782267|ref|XP_002926549.1| PREDICTED: putative methyltransferase NSUN7-like [Ailuropoda
           melanoleuca]
 gi|281341040|gb|EFB16624.1| hypothetical protein PANDA_016208 [Ailuropoda melanoleuca]
          Length = 722

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 70/470 (14%), Positives = 137/470 (29%), Gaps = 59/470 (12%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    LL   D+   R    +    L+F   ++ +L    
Sbjct: 58  IFQGIRFEKSPEQVLIKYGNEPLRSLLKSEDEAFQRSSYELAFSALKFQDILETILIDSS 117

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            +     E     +E  +      + L   
Sbjct: 118 IFPSTTIPEHLNSLIIVMLYD-FQDRKFQARLFSDNEEPIAEVQEVENLLNSFKTKLAAA 176

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET--- 188
                     ++   I+PE  +        +   L +     +       V   ++    
Sbjct: 177 LARCRIKHDALSIYHILPETVRN----QELRASTLPLYAWINTCKISPEDVHCSLKKKGY 232

Query: 189 --------WAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFG 238
                      K+ AV      + +        ++++  F +     QD S S+ V    
Sbjct: 233 NKVKSVLHIDDKVYAVDQHCYDVLIFPSHLKNDLLNIDLFKDYKLIFQDKSRSLAVHSVR 292

Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-------SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
            L N+    L    G       +       +         S+ +   L+    ++     
Sbjct: 293 ALLNMDDDILMVNTGSWYTVAHMSILTNNNTSKIFVCGVKSQAKDPDLKKLFTKMGCKNI 352

Query: 292 DIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTR-------D 333
           +I+     +   K    +    +L+   CS  G           H D    +        
Sbjct: 353 EILHETFLNIESKDHRLQKVKVILLLPHCSGLGVSNPVEFILNEHEDTGLLKDFSQGGTS 412

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP- 392
            D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L    + +++ P 
Sbjct: 413 EDKLHILAQQQYEQLTHAMKFAKAQA-VVYCTCSVYPEENEAVVKKALELQDLGIKVQPY 471

Query: 393 --LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                         + LS + + R+ P         S   +G F   L R
Sbjct: 472 RLSPPVLPLCSLKEIHLSTDKFFRMEP---------SGITNGCFLSVLTR 512


>gi|182683397|ref|YP_001835144.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CGSP14]
 gi|182628731|gb|ACB89679.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae CGSP14]
          Length = 146

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 14  SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDR-EYTDVQLPAFLIDLVSGVQAKKEE 71

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      ++ A+E AK D  ++  
Sbjct: 72  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAINEAIELAK-DFSDQKS 130

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 131 ARFINGLLSQF 141


>gi|322412645|gb|EFY03553.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 149

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 12/138 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVT 56
            S  + R  +   L  +         L+  ++     +++ + ++       +  +VN  
Sbjct: 7   NSRRDLRERAFQALFSMEMGG---DFLVASQFAYDYDKVVDEGNEALELPIFLLNLVNGV 63

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
                 +D  +   L    SL R   + + LLR+ + +I Y  +  D   ++  +E AK+
Sbjct: 64  NDHKEELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIEVAKK 123

Query: 114 DKENRHFAKLVNSILRRV 131
              +   AK +N +L + 
Sbjct: 124 Y-SDETSAKFINGLLSQF 140


>gi|319760371|ref|YP_004124309.1| N utilization substance protein B-like protein [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039085|gb|ADV33635.1| N utilization substance protein B-like protein [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 140

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  +   ARL +   L      +     L+++E    + + +   D    R +    + 
Sbjct: 1   MKFITRRLARLCALQALYSWQFSK---NDLIEIENYIVSIQNIQNFDISYFRELYIGVIN 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
            +  +D ++   L   L    Y    +L +++ ++    D+    V++ A+E AK     
Sbjct: 58  CISDLDKLMIPYLFRDLKTIGYVEYSVLLIALFELTQCYDIPYKVVMNEAIELAKIFGSE 117

Query: 118 RHFA 121
           + + 
Sbjct: 118 KSYK 121


>gi|226953323|ref|ZP_03823787.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC
           27244]
 gi|262373826|ref|ZP_06067104.1| transcription antitermination factor NusB [Acinetobacter junii
           SH205]
 gi|226835949|gb|EEH68332.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC
           27244]
 gi|262311579|gb|EEY92665.1| transcription antitermination factor NusB [Acinetobacter junii
           SH205]
          Length = 149

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   +      +  +  +      ++A   +   D      ++   +     +D +L  V
Sbjct: 19  AVQGIYEWQMSQNPVHEIEARTRVENAMHKV---DLNYYHELLTQVVAQHEALDELLIPV 75

Query: 71  LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           L   L          LR+   ++  +L+V    V+D A+E AK         K +N +L 
Sbjct: 76  LDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134

Query: 130 R 130
           R
Sbjct: 135 R 135


>gi|225854005|ref|YP_002735517.1| transcription antitermination protein NusB [Streptococcus
           pneumoniae JJA]
 gi|254772660|sp|C1CCJ6|NUSB_STRZJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|225724174|gb|ACO20027.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           JJA]
          Length = 140

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y        + +    +  +V+        
Sbjct: 8   SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-AVQLPAFLIDLVSGVQAKKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK D  ++  
Sbjct: 66  LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|229552487|ref|ZP_04441212.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314039|gb|EEN80012.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           LMS2-1]
          Length = 139

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57
           M + M +R    H +     + +           ++ +  +  +D      + A+V   L
Sbjct: 1   MTNKMESR----HAIREAAFRALFALATNPEADKNAVYAEVLPKDTEVPSYLTALVEGVL 56

Query: 58  RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
                +DA L   L     L R       +LR+ + +I Y + + + A ++ A+  AKR 
Sbjct: 57  ANQAALDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLAKRY 116

Query: 115 KENRHFAKLVNSILRRV 131
             +   AK VN IL   
Sbjct: 117 -SDEQSAKFVNGILANF 132


>gi|332286886|ref|YP_004418797.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7]
 gi|330430839|gb|AEC22173.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7]
          Length = 166

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 3/139 (2%)

Query: 9   LVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
             +   +   + +    L    +++            D    + +++  LR  P +    
Sbjct: 28  EFALQGVYAWLLRGDAGLQEAGEIDAHIRDDEEFHDADATWFKTLLHGVLREAPALRERF 87

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              +   L         +L +   ++  +++V     ++ AVE AK       F   VN 
Sbjct: 88  MPHVDRPLEELSPIEHGILLIGSYELVHHIEVPYKVAINEAVELAKSFGGTDGFK-FVNG 146

Query: 127 ILRRVSREKIELLQRIAGI 145
           +L +++ +      + A  
Sbjct: 147 VLDKMAADVRSQEVQAAAR 165


>gi|302499366|ref|XP_003011679.1| NOL1/NOP2/sun domain protein, putative [Arthroderma benhamiae CBS
           112371]
 gi|291175231|gb|EFE31039.1| NOL1/NOP2/sun domain protein, putative [Arthroderma benhamiae CBS
           112371]
          Length = 550

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 91/336 (27%), Gaps = 90/336 (26%)

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF----GTLNN 242
            T   K   +      +        I S   + EG   +QD ++  P  L          
Sbjct: 196 ATADEKKYCLDEHIPDLMAISRDIDITSSSAYKEGRLILQDKASCFPAYLLLGDHPGQWK 255

Query: 243 LSVLDLCAAPGGKTAQL--------IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294
             ++D CAAPG KT  L             +V +LD S  R + L+  + +        +
Sbjct: 256 GDLIDGCAAPGNKTTHLASLLSSTPEKQKNRVFSLDASHSRSKILQTMVKKAGASNIVTV 315

Query: 295 EMDAFDYCPKKLFDAVL------VDAPCSSTGTIRRHPD--------------------- 327
                                  +D  CS +G  +R                        
Sbjct: 316 LPGQDFLALDPADTRFQHVTALLLDPSCSGSGITKREDVPQLDLPKSKSELTLATTTSSK 375

Query: 328 -VLWTRDTDDI-----------------------VKSACFQRKLLLQGISFVKPGGIVVF 363
                +   +                         K A  Q +++     F      V +
Sbjct: 376 GSKNRKRKRENPADSSSPGSSPTTEAKEDESERLAKLANLQSQIVEHAFGFPAAT-RVTY 434

Query: 364 SNCSLDKQDSEEVVQKVL-----RSSPIPVELVP--------------LNSAYWKSIDMA 404
           S CS+  +++E+VV +VL     ++    +EL                L+    +S    
Sbjct: 435 STCSIHHEENEDVVARVLASSIAKNRGWRLELRSEQARGLRNWHHRGVLSGGSSESPPQL 494

Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                E  IR  P           G  GFF     R
Sbjct: 495 SPEQLEACIRCWP-------AGDEGTGGFFVAIFVR 523


>gi|251783265|ref|YP_002997570.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391897|dbj|BAH82356.1| transcription antitermination protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 155

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 12/138 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVT 56
            S  + R  +   L  +         L+  ++     +++ + ++       +  +VN  
Sbjct: 13  NSRRDLRERAFQALFSMEMGG---DFLVASQFAYDYDKVVDEGNEALELPIFLLNLVNGV 69

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
                 +D  +   L    SL R   + + LLR+ + +I Y  +  D   ++  +E AK+
Sbjct: 70  NDHKEELDRTISEHLKTGWSLERLTMTDKTLLRLGLFEIKYFNETPDRVALNEIIEVAKK 129

Query: 114 DKENRHFAKLVNSILRRV 131
              +   AK +N +L + 
Sbjct: 130 Y-SDETSAKFINGLLSQF 146


>gi|322377045|ref|ZP_08051537.1| transcription antitermination factor NusB [Streptococcus sp. M334]
 gi|321281758|gb|EFX58766.1| transcription antitermination factor NusB [Streptococcus sp. M334]
          Length = 139

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 11/134 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59
           S    R  +   L   +     +       Y           D      +  +V+     
Sbjct: 8   SRRELRKCAFQALMS-LEFGTDVETACRFAYTHDR----EDADVQIPAFLLNLVSGVQAQ 62

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
              +D  ++  L S   + R     + LLR+ + +I   D      V+ A+E AK +  +
Sbjct: 63  KDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121

Query: 118 RHFAKLVNSILRRV 131
           +  A+ +N +L + 
Sbjct: 122 QKSARFINGLLSQF 135


>gi|144897828|emb|CAM74692.1| NusB antitermination factor [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 160

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLL---DLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
              ARL +   L  +    ++    L              L++ D  LV  +V       
Sbjct: 11  RSAARLAAVQALYSMEITGVTAEQALVEFRQRLDSEPRGKLAEPDMDLVALLVRGASFDG 70

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117
             +DA +   L     + R +  L+ +LR    ++           +   V+        
Sbjct: 71  GDLDAHIARGLARDWTVDRLESVLRAILRAGAYELKARPQTPARVAITEYVDVTHAFYSG 130

Query: 118 RHFAKLVNSILRRV 131
                LVN+++ R+
Sbjct: 131 PE-PGLVNAVMDRM 143


>gi|49475530|ref|YP_033571.1| transcription antitermination protein NusB [Bartonella henselae
           str. Houston-1]
 gi|81647946|sp|Q6G3K8|NUSB_BARHE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49238336|emb|CAF27560.1| N utilization substance protein B [Bartonella henselae str.
           Houston-1]
          Length = 158

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +             + +        D     AI+   
Sbjct: 14  NKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQYLDADFQWFLAIITGV 73

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           ++   ++D +L+  L    SL R    L+ +LR  + +++   DV    V+   V+ AK 
Sbjct: 74  VKDQKQLDPMLNQQLSAEWSLSRLDSILRAILRAGLWELINRQDVPIAVVMSEYVDIAKA 133

Query: 114 DKENR 118
             E  
Sbjct: 134 FFEGD 138


>gi|319898989|ref|YP_004159082.1| N utilization substance protein B [Bartonella clarridgeiae 73]
 gi|319402953|emb|CBI76504.1| N utilization substance protein B [Bartonella clarridgeiae 73]
          Length = 156

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +  ++         + +        D     +I+   
Sbjct: 14  NKRGAARLAAVQALYQMDIIGTGVIEIIAEYEAYRLGKNIDGDQYLDADFQWFCSIIVGV 73

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           ++   ++D +L   L    +L R   +L+ +LR  + +++   DV    +++  V+ AK 
Sbjct: 74  VKDQKQLDPMLHQKLSEEWALSRLDSTLRAILRAGLWELINRKDVPVAVIINEYVDIAKA 133

Query: 114 DKENRHFAKLVNSILRR 130
                   +LVN++L  
Sbjct: 134 FF-ESDEPRLVNAVLDN 149


>gi|228941343|ref|ZP_04103895.1| N utilization substance protein B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954468|ref|ZP_04116493.1| N utilization substance protein B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960450|ref|ZP_04122101.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228980868|ref|ZP_04141172.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
 gi|229047878|ref|ZP_04193454.1| N utilization substance protein B [Bacillus cereus AH676]
 gi|229071689|ref|ZP_04204905.1| N utilization substance protein B [Bacillus cereus F65185]
 gi|229081441|ref|ZP_04213941.1| N utilization substance protein B [Bacillus cereus Rock4-2]
 gi|229111657|ref|ZP_04241207.1| N utilization substance protein B [Bacillus cereus Rock1-15]
 gi|229129462|ref|ZP_04258433.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
 gi|229146757|ref|ZP_04275122.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
 gi|229152384|ref|ZP_04280576.1| N utilization substance protein B [Bacillus cereus m1550]
 gi|229163128|ref|ZP_04291084.1| N utilization substance protein B [Bacillus cereus R309803]
 gi|229180462|ref|ZP_04307804.1| N utilization substance protein B [Bacillus cereus 172560W]
 gi|229192394|ref|ZP_04319357.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
 gi|228590971|gb|EEK48827.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
 gi|228602886|gb|EEK60365.1| N utilization substance protein B [Bacillus cereus 172560W]
 gi|228620534|gb|EEK77404.1| N utilization substance protein B [Bacillus cereus R309803]
 gi|228630992|gb|EEK87629.1| N utilization substance protein B [Bacillus cereus m1550]
 gi|228636585|gb|EEK93050.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
 gi|228654067|gb|EEL09934.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
 gi|228671792|gb|EEL27086.1| N utilization substance protein B [Bacillus cereus Rock1-15]
 gi|228701856|gb|EEL54342.1| N utilization substance protein B [Bacillus cereus Rock4-2]
 gi|228711420|gb|EEL63379.1| N utilization substance protein B [Bacillus cereus F65185]
 gi|228723335|gb|EEL74704.1| N utilization substance protein B [Bacillus cereus AH676]
 gi|228778804|gb|EEM27067.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
 gi|228799214|gb|EEM46180.1| N utilization substance protein B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805125|gb|EEM51719.1| N utilization substance protein B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818269|gb|EEM64342.1| N utilization substance protein B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 120

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L  +           ++    +             + ++V   +     ID  +   
Sbjct: 1   MQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVENKEAIDEAIRQN 54

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    +    + +N +L
Sbjct: 55  LKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113

Query: 129 RR 130
             
Sbjct: 114 SN 115


>gi|326382154|ref|ZP_08203846.1| transcription antitermination protein NusB [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198884|gb|EGD56066.1| transcription antitermination protein NusB [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 149

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK       AR  +  LL     K +  T L+                      +V    
Sbjct: 1   MKKPGTRHKARKRAVDLLFEAEAKNVKATQLIAERREIYPSDDSVGTMYDYTVRVVEGVT 60

Query: 58  RFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
               ++DAV++  L +  L R     + +LR++V ++LY  DV    V+D AVE AK   
Sbjct: 61  VDASQVDAVIESHLENWKLHRLPAVDRAILRLAVWELLYANDVDIDVVLDEAVELAKE-L 119

Query: 116 ENRHFAKLVNSILRR 130
                   VN +L +
Sbjct: 120 STDDSPSFVNGVLGK 134


>gi|310816559|ref|YP_003964523.1| putative N utilization substance protein B [Ketogulonicigenium
           vulgare Y25]
 gi|308755294|gb|ADO43223.1| putative N utilization substance protein B [Ketogulonicigenium
           vulgare Y25]
          Length = 147

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----DQILVRAIVNVTLR 58
              ARL +   L  +    +++T +            +        D  L R ++   + 
Sbjct: 2   RSAARLYAVQALFQMEAAGVTVTRVTREFEDFRFGASIDGEELVEGDVTLFRTLMQDAVN 61

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
              +ID + D  L     + R   +L+ L R + A+ +  +     V+   ++ A     
Sbjct: 62  NQAQIDQMTDRALVSKWPIARIDPTLRALFRAAGAEFMLKETPAKVVIVEFMDIASAFSA 121

Query: 117 NRHFAKLVNSILRRV 131
           +    K VN++L  +
Sbjct: 122 DPKEPKFVNAVLDHM 136


>gi|300854298|ref|YP_003779282.1| nusB-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300434413|gb|ADK14180.1| nusB-like protein [Clostridium ljungdahlii DSM 13528]
          Length = 158

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 23/150 (15%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------------------ 44
           +   +R +   LL  +   R     +L     D+  + +  +                  
Sbjct: 2   NRKKSRELIMKLLFEMSINREDFRSVLAN-LEDNLEKKIESKETDGAEEVYSENIDKLKN 60

Query: 45  -DQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADY 101
            D   V+ +V         +D  ++  L + +L R       +LR+   + LY  D+ + 
Sbjct: 61  VDMEYVKRVVKGIEENKDSLDKEIEKYLRNWTLNRLPKVDAAILRICTYEFLYEQDIPEK 120

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             ++ A+E AK+    +  A  +N +L  +
Sbjct: 121 VSINEAIELAKKYSSEKS-APFINGVLGNM 149


>gi|323127989|gb|ADX25286.1| transcription antitermination protein NusB [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 149

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 12/138 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVT 56
            S  + R  +   L  +         L+  ++     +++ + ++       +  +VN  
Sbjct: 7   NSRRDLRERAFQALFSMEMGG---DFLVASQFAYDYDKVVDEGNEALELPIFLLNLVNGV 63

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
                 +D  +   L    SL R   + + LLR+ + +I Y  +  D   ++  +E AK+
Sbjct: 64  NDHKKELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIEVAKK 123

Query: 114 DKENRHFAKLVNSILRRV 131
              +   AK +N +L + 
Sbjct: 124 Y-SDETSAKFINGLLSQF 140


>gi|328955583|ref|YP_004372916.1| NusB antitermination factor [Coriobacterium glomerans PW2]
 gi|328455907|gb|AEB07101.1| NusB antitermination factor [Coriobacterium glomerans PW2]
          Length = 198

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL        SL  +L+ +Y  S    L          +V      L RI
Sbjct: 9   RTLARSQALQLLFQAEALMCSLDEVLEGDYLLSQG-PLEP----YALELVRGCYAHLDRI 63

Query: 64  DAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHF 120
           D+ L  V  +  L R   S + LLR+++ ++   D    D  V++ AVE AK        
Sbjct: 64  DSALCAVSQNWELSRMPGSDRNLLRLAIYEMRLADEPIEDAVVINEAVEIAKAY-GTDES 122

Query: 121 AKLVNSI 127
           A  VN +
Sbjct: 123 AGFVNGV 129


>gi|49474164|ref|YP_032206.1| transcription antitermination protein NusB [Bartonella quintana
           str. Toulouse]
 gi|81647100|sp|Q6G004|NUSB_BARQU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|49239668|emb|CAF26039.1| N utilization substance protein B [Bartonella quintana str.
           Toulouse]
          Length = 156

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +             + +        D     AI+   
Sbjct: 14  NKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYHLEKNIDGNQYLDADFQWFLAIITGV 73

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           ++   ++D +L   L    SL R    L+ +LR  + +++   DV    V++  V+ AK 
Sbjct: 74  VKDQKQLDPMLHQQLSAEWSLSRLDSILRAILRAGLWELINRQDVPIAVVMNEYVDIAKA 133

Query: 114 DKENR 118
             E  
Sbjct: 134 FFEGD 138


>gi|68536104|ref|YP_250809.1| transcription antitermination protein NusB [Corynebacterium
           jeikeium K411]
 gi|119390762|sp|Q4JVG6|NUSB_CORJK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|68263703|emb|CAI37191.1| N utilization substance protein B [Corynebacterium jeikeium K411]
          Length = 202

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 4/123 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           S   AR  +  +L     + I  +  + +            +      + IV      L 
Sbjct: 22  SRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVATNLD 81

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +D  +   L     L R     + +LRV+  ++ +  DV     V   VE A     ++
Sbjct: 82  ALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYSHDK 141

Query: 119 HFA 121
             +
Sbjct: 142 APS 144


>gi|297182177|gb|ADI18348.1| tRNA and rRNA cytosine-c5-methylases [uncultured actinobacterium
          HF4000_04C13]
          Length = 86

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 3  SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
          SG + R ++  +L  + R       +L      S    L +RD+  V  +V  T R    
Sbjct: 17 SGEDPRRLALEVLGRIERDGAYANLVLRTALDRS---NLDRRDRAFVTDLVYGTTRMRRA 73

Query: 63 IDAVLDFVLI 72
           D ++D  L 
Sbjct: 74 CDHLVDSFLH 83


>gi|229820523|ref|YP_002882049.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333]
 gi|259514802|sp|C5C681|NUSB_BEUC1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229566436|gb|ACQ80287.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333]
          Length = 153

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 12  SHLLSCVMRK----RISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
             LL    +K        +   + L     A        +     IV        RID +
Sbjct: 12  LDLLYEADQKAVSGGAPASGDAVALLAERIATPHGEAPMREYTVEIVEGVAAHQARIDEL 71

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           L+      SL R     + +LR+ V ++L+  DV D   VD AV  A  +         V
Sbjct: 72  LETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAVALA-AELSTDDSPTFV 130

Query: 125 NSILRR 130
           N +L +
Sbjct: 131 NGLLGQ 136


>gi|156098398|ref|XP_001615231.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804105|gb|EDL45504.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 505

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 253 GGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312
           G   A             V  + L K     +RLHL   + + +++F   P+  F  +L+
Sbjct: 285 GFFVANEFNRVRYDRLKQVLGKHLPKDLLTSNRLHLTNYNGLNVNSFLRFPR--FHKILL 342

Query: 313 DAPCSSTG--TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370
           D PCS+      ++  D+L       I  +A  Q +LL      +   GI+V+S C+L  
Sbjct: 343 DVPCSTDEHLIKKKKKDLLNKWSDKVIKNNASVQFELLRNSFQLLHTNGILVYSTCALSH 402

Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            ++++V++K L      V++V       +
Sbjct: 403 HENDQVIEKFLTKYKKQVQVVDFVKEEVQ 431


>gi|294790502|ref|ZP_06755660.1| transcription antitermination factor NusB [Scardovia inopinata
           F0304]
 gi|294458399|gb|EFG26752.1| transcription antitermination factor NusB [Scardovia inopinata
           F0304]
          Length = 176

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 8/147 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  + + L     K   +  LLD        +          + I+         ID  
Sbjct: 6   ARKRALNTLYEADEKGQEILPLLDERLAFPGAQTPLP---AYAQDIIRGVASHRRTIDRA 62

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH---FA 121
           ++       + R     + + R++  +I+Y D V     +D A+  AK   +        
Sbjct: 63  INEHSTGWDVKRMHVLDRNIARIAAWEIVYNDEVLAKVAIDEALGLAKIYSDGEAPNFLH 122

Query: 122 KLVNSILRRVSREKIELLQRIAGISII 148
            L+++I R     + E  +     + +
Sbjct: 123 GLLSAIERDAESIRTEEQEWQEYRASL 149


>gi|282882096|ref|ZP_06290737.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
           315-B]
 gi|300814940|ref|ZP_07095168.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281298126|gb|EFA90581.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
           315-B]
 gi|300510910|gb|EFK38182.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 139

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             NAR+ +  LL  +   +      ++  + +  F   S+ +Q  + ++++  +  L  +
Sbjct: 3   RKNARVGAMQLLYSMELNKDFSQENIEKFFENYDF---SESEQSYINSVISELVNNLDSV 59

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           D VL   L   ++PR     +++LRV++ + LY  D+     ++ AVE AK+      
Sbjct: 60  DKVLSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEES 117


>gi|260578799|ref|ZP_05846706.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603097|gb|EEW16367.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium jeikeium ATCC 43734]
          Length = 205

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 4/123 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           S   AR  +  +L     + I  +  + +            +      + IV      L 
Sbjct: 22  SRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVATNLD 81

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +D  +   L     L R     + +LRV+  ++ +  DV     V   VE A     ++
Sbjct: 82  ALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYSHDK 141

Query: 119 HFA 121
             +
Sbjct: 142 APS 144


>gi|110597193|ref|ZP_01385482.1| transcription antitermination factor NusB [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341384|gb|EAT59849.1| transcription antitermination factor NusB [Chlorobium ferrooxidans
           DSM 13031]
          Length = 191

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 5/136 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +  +   +                +         ++      
Sbjct: 28  MKTYRRQIREKILQALYTIEIRETDIDSAAGWLLTQEILDDANAM--KFFNLLLKSIKEN 85

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +        + R     + +LR+++A+ILY  D+     ++ A+E AK+    
Sbjct: 86  REEIDRYIAKHTFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFTST 145

Query: 118 RHFAKLVNSILRRVSR 133
              +K VN IL  +  
Sbjct: 146 DKSSKFVNGILDAIFN 161


>gi|299143829|ref|ZP_07036909.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518314|gb|EFI42053.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 141

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR+    +L  +       +  L+    +  F   S+ ++  + + +   ++ L  
Sbjct: 2   SRKKARIGQMQVLYQMDITDDFSSDGLNTFLENFEF---SEEEKDYINSTIPEIIKNLEN 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID  +   L   SL R     +++LR+++ +ILY  D+ +   ++ AVE +K+   +   
Sbjct: 59  IDQTIQSHLEGWSLNRLAKVDKEVLRIAIYEILYRDDIPEEVSINEAVEISKQF-GSSES 117

Query: 121 AKLVNSILRRVSREKI 136
           +K +N IL  + R   
Sbjct: 118 SKFINGILGSIYRSMH 133


>gi|229019401|ref|ZP_04176224.1| N utilization substance protein B [Bacillus cereus AH1273]
 gi|229025645|ref|ZP_04182051.1| N utilization substance protein B [Bacillus cereus AH1272]
 gi|229098654|ref|ZP_04229594.1| N utilization substance protein B [Bacillus cereus Rock3-29]
 gi|229104810|ref|ZP_04235471.1| N utilization substance protein B [Bacillus cereus Rock3-28]
 gi|229117679|ref|ZP_04247049.1| N utilization substance protein B [Bacillus cereus Rock1-3]
 gi|228665771|gb|EEL21243.1| N utilization substance protein B [Bacillus cereus Rock1-3]
 gi|228678683|gb|EEL32899.1| N utilization substance protein B [Bacillus cereus Rock3-28]
 gi|228684733|gb|EEL38671.1| N utilization substance protein B [Bacillus cereus Rock3-29]
 gi|228735643|gb|EEL86232.1| N utilization substance protein B [Bacillus cereus AH1272]
 gi|228741871|gb|EEL92048.1| N utilization substance protein B [Bacillus cereus AH1273]
          Length = 120

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L  +           ++    +             + ++V   +     IDA +   
Sbjct: 1   MQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVDNKEEIDAAIRQN 54

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    +    + +N +L
Sbjct: 55  LKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113

Query: 129 RR 130
             
Sbjct: 114 SN 115


>gi|309800710|ref|ZP_07694848.1| NOL1/NOP2/sun family protein [Streptococcus infantis SK1302]
 gi|308115663|gb|EFO53201.1| NOL1/NOP2/sun family protein [Streptococcus infantis SK1302]
          Length = 229

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            +  GG +V+S C+   +++EE+VQ +L S    +  V   +     ID+  A       
Sbjct: 1   MLADGGRLVYSTCTWSPEENEEIVQWLLDSYDFELIPVQQINGMVPGIDLPEAA------ 54

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALR-----RLIQ 443
           R+ P   +            F   L+     ++ +
Sbjct: 55  RMYPHHFKGEGQ--------FVAHLQFRGENKVSK 81


>gi|299139121|ref|ZP_07032297.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8]
 gi|298598801|gb|EFI54963.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8]
          Length = 141

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   +R ++  +L      +     +   E   ++   +    +     +  +  +  
Sbjct: 1   MGTRRKSRELAMQMLFQGDLGKQKPEEV--EELFWASREDVDDETRGFADDLHRLATQRE 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
             +DA++     +  L R     + LLR +VA+++ Y       +++  +E A+R     
Sbjct: 59  DEVDALIQKHAQNWRLERMPVVDRNLLRTAVAEMVGYPKTPAAVIINETLEIARRYAAPE 118

Query: 119 HFA 121
              
Sbjct: 119 SIH 121


>gi|322391457|ref|ZP_08064926.1| N utilization substance protein B [Streptococcus peroris ATCC
           700780]
 gi|321145540|gb|EFX40932.1| N utilization substance protein B [Streptococcus peroris ATCC
           700780]
          Length = 140

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L  +      +       Y          +    +  +V         
Sbjct: 8   SRRELRKCAFQALMSLEY-GSDIETACRFAYTHDREDD-EVKLPSFLINLVTGVQAQKEE 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK    ++  
Sbjct: 66  LDKQITQHLKAGWTIDRLTLVEKNLLRLGVFEITSFDTPQLVAVNEAIELAKSF-SDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|94986598|ref|YP_594531.1| transcription termination factor [Lawsonia intracellularis
           PHE/MN1-00]
 gi|119390780|sp|Q1MS16|NUSB_LAWIP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|94730847|emb|CAJ54209.1| transcription termination factor [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 161

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI----------VNVTL 57
           R  +  +L  +   +I+    L   + +     L +R+  ++  +          V    
Sbjct: 13  RTKAFQVLYSLHFTQINTIETLKEIFLNLP-NPLEERNTGIITELDTQISFSWQLVEGVW 71

Query: 58  RFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115
           R + R+D ++     +  + R       LLR++  ++ Y  DV     ++ A+E A    
Sbjct: 72  RNVTRLDKIISQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSLNEALELAT-CF 130

Query: 116 ENRHFAKLVNSILR 129
            +    K +N IL 
Sbjct: 131 GDEKARKFINGILD 144


>gi|45656304|ref|YP_000390.1| transcription antitermination protein NusB [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45599538|gb|AAS69027.1| transcription termination factor [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 126

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
            L  +   +  L  +L  ++ D         ++    +IVN  ++   +ID ++     +
Sbjct: 2   ALYQLELTQPPLKEVLKFKWYDKKT---EPEERDFAVSIVNGVVKNQEQIDTLIKKYSKN 58

Query: 74  -SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
               R     + +LR+S+  +LY  +V     +D AVE  K  +     
Sbjct: 59  WDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESA 107


>gi|116492583|ref|YP_804318.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
 gi|122265953|sp|Q03FZ6|NUSB_PEDPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116102733|gb|ABJ67876.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
          Length = 133

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M  +    R  +  ++          L+ L D    +  F      DQ  ++ +V     
Sbjct: 1   MSLNRHQIRESAFKIIFAKSANPDADLSELQDQVLEE--FHETEAPDQ-FLKDLVMGVSL 57

Query: 59  FLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
            L  I+  +   L     + R +   + +L++   +I Y +  D   ++ A+E AK+   
Sbjct: 58  NLEAINETISGELKKGWTVKRLESPDRVILQMGTYEIKYTETPDKVAINEALELAKKY-T 116

Query: 117 NRHFAKLVNSILRR 130
           +    K +N +L  
Sbjct: 117 DEDARKFINGVLSN 130


>gi|325068837|ref|ZP_08127510.1| NusB antitermination factor [Actinomyces oris K20]
          Length = 163

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ----ILVRAIVNVTL 57
            +   AR  +  +L    ++ +      +     +  R +S  +        R I+N   
Sbjct: 21  TARTKARRRAIEILFEADQRGMLSDEGAEELRSFAQLRAVSSANHTEAPAYTREILNGVC 80

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
             L  +D  +       +L R     + + RV+  +I+Y D V     VD A+  ++   
Sbjct: 81  DHLDDVDETIQTYAQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAMTLSRMLS 140

Query: 116 ENRH 119
            +  
Sbjct: 141 TDES 144


>gi|315924276|ref|ZP_07920500.1| N utilization substance protein B [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622437|gb|EFV02394.1| N utilization substance protein B [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 158

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 8   RLVSSHLLSCVMRKR--ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           R ++   +  +   +    L   +       A              +V+V +  L  ID 
Sbjct: 13  RELALRAVFQIEFHQDAQDLQKGIAAVIDSDAGFEHDHGSSGYAAYLVDVVVDHLAAIDE 72

Query: 66  VLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
            +   L     + R   + + +LRV+ A++ YLD      ++ AVE AKR   +    + 
Sbjct: 73  RIAQYLRKDWHMDRLPGAEKAILRVATAEMCYLDQPLEIAINEAVELAKRYC-DEDAPRY 131

Query: 124 VNSILRRVSRE 134
           +N IL  +   
Sbjct: 132 INGILNNLGHH 142


>gi|269467885|gb|EEZ79624.1| transcription termination factor [uncultured SUP05 cluster
           bacterium]
          Length = 142

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 38/121 (31%), Gaps = 5/121 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                +R      +   +     +   ++ ++ +     +S   +     +    L+   
Sbjct: 5   TPKQRSRERVVQAVYQYLVSGGEV-LQIEQQFLNQKEGKIS---KAFFSNLFINILKNRI 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
            +D ++   +             +L + V ++    +V    V++ A+E AK       F
Sbjct: 61  ELDELIAPTISRETDELGSVEHAVLYLGVYELQNSIEVPYKVVINEALEIAKLYGAEGAF 120

Query: 121 A 121
            
Sbjct: 121 K 121


>gi|322387215|ref|ZP_08060825.1| N utilization substance protein B [Streptococcus infantis ATCC
           700779]
 gi|321141744|gb|EFX37239.1| N utilization substance protein B [Streptococcus infantis ATCC
           700779]
          Length = 140

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L  +      +       Y          +    +  +V+        
Sbjct: 8   SRRELRKCAFQALMSLEY-GSDIETACRFAYTHDREDD-EVKLPSFLIDLVSGVQAQKEE 65

Query: 63  IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L S   + R     + LLR+ V +I   D      V+ A+E AK    ++  
Sbjct: 66  LDKQITQHLKSGWTIERLTLVEKNLLRLGVFEITSFDTPQLVAVNEAIELAKSF-SDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|328716088|ref|XP_003245829.1| PREDICTED: putative methyltransferase NSUN4-like [Acyrthosiphon
           pisum]
          Length = 478

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 89/235 (37%), Gaps = 24/235 (10%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLR 280
           +++ D  + +PV          VLD+C+APGGK    + +     +   D+ + R++K+ 
Sbjct: 251 YYLMDGGSILPVLALDLQLGDRVLDMCSAPGGKALATLQTLLPESLVCNDIQESRIKKIH 310

Query: 281 CNLDRLHL------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332
             +                 +M+A       +++ +LVD PC++          ++    
Sbjct: 311 NVMSEYISDYQSWGSRLMFTQMNARSLNEPDVYNKILVDVPCTNDRHSLENNENNMFKPT 370

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS------SPI 386
              + ++    Q  +L   +  +  GG VV+S CSL    ++ VV+  L+         I
Sbjct: 371 RAKERLQLPEIQADILKSALMNIAVGGTVVYSTCSLSPIQNDGVVKMALKKIWEETNHQI 430

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            V+ +       KS+         G + + P +      +       +   L R+
Sbjct: 431 IVKDLTKQFRPLKSLYSFSKGLKFGQM-VMPFLPLNYGPL-------YLCKLVRV 477


>gi|302380357|ref|ZP_07268827.1| transcription antitermination factor NusB [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311847|gb|EFK93858.1| transcription antitermination factor NusB [Finegoldia magna
           ACS-171-V-Col3]
          Length = 137

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   +R  +  L+  +          ++       ++ +++ D    + IV   +  +  
Sbjct: 2   SRRQSRKSAMQLIYEMNMNEDYDKQRIEEFCK---YQNINKNDIEFFKEIVLNFIEHIDD 58

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           I  +++      +L R       +L+V V +ILY++   D   ++ AVE AK     + +
Sbjct: 59  IVNIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSY 118

Query: 121 A 121
           +
Sbjct: 119 S 119


>gi|187935150|ref|YP_001886595.1| transcription antitermination factor NusB [Clostridium botulinum B
           str. Eklund 17B]
 gi|238691670|sp|B2TRN6|NUSB_CLOBB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|187723303|gb|ACD24524.1| transcription antitermination factor NusB [Clostridium botulinum B
           str. Eklund 17B]
          Length = 133

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + +R  +  LL  +     +    L+    +     + + D   ++ I+       
Sbjct: 1   MNRKL-SREKAMELLFGMTLNTDNCEETLENFIDNYE-SDIKELDITYIKRILIGVENNK 58

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  +   L    + R       +LR++V ++L+  ++ +   ++ A+E  K+  + +
Sbjct: 59  DNIDESISKNLCNWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEK 118

Query: 119 HFAKLVNSILRR 130
             +  VN +L  
Sbjct: 119 SVS-FVNGVLDN 129


>gi|188590523|ref|YP_001921552.1| transcription antitermination factor NusB [Clostridium botulinum E3
           str. Alaska E43]
 gi|238689705|sp|B2V4R8|NUSB_CLOBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|188500804|gb|ACD53940.1| transcription antitermination factor NusB [Clostridium botulinum E3
           str. Alaska E43]
          Length = 133

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + +R  +  LL  +     +    L     +     + + D   ++ I+       
Sbjct: 1   MNRKL-SREKAMELLFGMTLNTDNCEETLGNFIDNYE-SDIKELDITYIKRILIGVENNK 58

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  +   L    + R       +LR++V ++L+  ++ +   ++ A+E  K+  + +
Sbjct: 59  DNIDEAISKNLCNWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEK 118

Query: 119 HFAKLVNSILRR 130
             +  +N +L  
Sbjct: 119 SVS-FINGVLDN 129


>gi|307708254|ref|ZP_07644721.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
           12261]
 gi|307615700|gb|EFN94906.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
           12261]
          Length = 141

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L   +     +       Y          +    +  +V+        
Sbjct: 8   SRRELRKCAFQALMS-LEFGTDMETACHFAYTHDREDE-DVQIPAFLLNLVSGVQAQKDE 65

Query: 63  IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  ++  L S   + R     + LLR+ + +I   D      V+ A+E AK +  ++  
Sbjct: 66  LDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|225551926|ref|ZP_03772866.1| transcription antitermination factor NusB [Borrelia sp. SV1]
 gi|225370924|gb|EEH00354.1| transcription antitermination factor NusB [Borrelia sp. SV1]
          Length = 145

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 59/142 (41%), Gaps = 5/142 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRF 59
           M      R+++   +  +   + ++  + D+   +     +  +  +    ++V  T   
Sbjct: 1   MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVIGTFNN 60

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116
           L  ID+++  + L  SL R       +LR+ V  + + +  +    V+D A+  AK+   
Sbjct: 61  LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAKKY-G 119

Query: 117 NRHFAKLVNSILRRVSREKIEL 138
           +++  K +N IL  + +     
Sbjct: 120 SKNSYKFINGILDALLKNMESC 141


>gi|217077046|ref|YP_002334762.1| transcription antitermination protein NusB [Thermosipho africanus
           TCF52B]
 gi|226738907|sp|B7IH57|NUSB_THEAB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217036899|gb|ACJ75421.1| transcription antitermination factor NusB [Thermosipho africanus
           TCF52B]
          Length = 142

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K     R      L     ++      L          L  ++ +    + +    + + 
Sbjct: 3   KRRHKMRESVFKALFQWDFQK---DEDLTEIAKQHVSLLEDEKLREQAYSYIEGIKKTIE 59

Query: 62  RIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            +D ++   L + +L R   + + +LR+   ++LY  DV     +D  +E  K      +
Sbjct: 60  SLDEIISKYLQNWTLDRLSVTDRNILRLGTYELLYVDDVPIEVTLDEMIELGKTY-GTEN 118

Query: 120 FAKLVNSILRR 130
             K VN +L R
Sbjct: 119 SGKFVNGVLDR 129


>gi|218888175|ref|YP_002437496.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|226738898|sp|B8DJF1|NUSB_DESVM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218759129|gb|ACL10028.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 165

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQ--------ILVRAIVN 54
           R ++  +L  +     +    L   Y  S           + D+             +++
Sbjct: 14  RALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEKADRQAPATAPQGYAWEVIH 73

Query: 55  VTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAK 112
              +    +D  +     +  + R       LLR++V ++L+  DV     ++ A+E +K
Sbjct: 74  GVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAMNEAIELSK 133

Query: 113 RDKENRHFAKLVNSILR 129
           +   + +    +N IL 
Sbjct: 134 QF-GDDNSRGFINGILD 149


>gi|51598370|ref|YP_072558.1| transcription antitermination protein NusB [Borrelia garinii PBi]
 gi|81610223|sp|Q662Q5|NUSB_BORGA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|51572941|gb|AAU06966.1| N-utilization substance protein B [Borrelia garinii PBi]
          Length = 142

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRI 63
              R+++   +  +   + ++  + D+   +     +  +  +    ++VN T   L  I
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFSIEDKGLDIENESIKSFYSSLVNGTFNNLEYI 61

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120
           D+++  +    SL R       +LR+ V  + + +  +    ++D A+  AK+   +++ 
Sbjct: 62  DSLIKDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKY-GSKNS 120

Query: 121 AKLVNSILRRVSREKIEL 138
            K +N IL  + +     
Sbjct: 121 DKFINGILDALLKNMENC 138


>gi|219684900|ref|ZP_03539842.1| transcription antitermination factor NusB [Borrelia garinii PBr]
 gi|219671845|gb|EED28900.1| transcription antitermination factor NusB [Borrelia garinii PBr]
          Length = 145

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 58/142 (40%), Gaps = 5/142 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRF 59
           M      R+++   +  +   + ++  + D+   +     +  +  +    ++VN T   
Sbjct: 1   MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFTIEDKGLDIENESIKSFYSSLVNGTFNN 60

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116
           L  ID ++  +    SL R       +LR+ V  + + +  +    ++D A+  AK+   
Sbjct: 61  LEYIDNLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKY-G 119

Query: 117 NRHFAKLVNSILRRVSREKIEL 138
           +++  K +N IL  + +     
Sbjct: 120 SKNSDKFINGILDALLKNMENC 141


>gi|255524173|ref|ZP_05391133.1| NusB antitermination factor [Clostridium carboxidivorans P7]
 gi|296186630|ref|ZP_06855032.1| transcription antitermination factor NusB [Clostridium
           carboxidivorans P7]
 gi|255512158|gb|EET88438.1| NusB antitermination factor [Clostridium carboxidivorans P7]
 gi|296048667|gb|EFG88099.1| transcription antitermination factor NusB [Clostridium
           carboxidivorans P7]
          Length = 155

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 22/141 (15%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------------LS 42
           +   +R +   LL  +   +     ++     +                         L 
Sbjct: 2   NRRKSRELVMKLLFQMTINKEDFKDVVANLKENIELDKSELQITGIEGKNEIDPENIDLK 61

Query: 43  QRDQILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VAD 100
             D   V  ++         ID+ ++  L    L R       +LRV   + LY D +  
Sbjct: 62  DIDMEYVIRVLKGVQENKESIDSAIEKHLINWKLNRLSKLDVAILRVCTYEFLYEDNIPK 121

Query: 101 YAVVDLAVEQAKRDKENRHFA 121
              ++ A+E AKR   ++  A
Sbjct: 122 NVSINEAIELAKRYSGDKSAA 142


>gi|228987373|ref|ZP_04147493.1| N utilization substance protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229140916|ref|ZP_04269460.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
 gi|229157781|ref|ZP_04285856.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
 gi|229186425|ref|ZP_04313589.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
 gi|229198309|ref|ZP_04325016.1| N utilization substance protein B [Bacillus cereus m1293]
 gi|228585188|gb|EEK43299.1| N utilization substance protein B [Bacillus cereus m1293]
 gi|228597052|gb|EEK54708.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
 gi|228625738|gb|EEK82490.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
 gi|228642492|gb|EEK98779.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
 gi|228772345|gb|EEM20791.1| N utilization substance protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 120

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L  +           ++    +             + ++V   +     ID  +   
Sbjct: 1   MQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVENKEVIDEAIRQN 54

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    +    + +N +L
Sbjct: 55  LKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113

Query: 129 RR 130
             
Sbjct: 114 SN 115


>gi|148555686|ref|YP_001263268.1| NusB antitermination factor [Sphingomonas wittichii RW1]
 gi|148500876|gb|ABQ69130.1| NusB antitermination factor [Sphingomonas wittichii RW1]
          Length = 151

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFLPRIDAVLDFV 70
                +   L  LLD  +       +        +      +V         IDA +   
Sbjct: 23  YQQEMEGTPLAALLDEFHQHRLGATIEDVEYAAAEVAFFDDLVKGVDARRAEIDAAIGAR 82

Query: 71  LISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           L S   L R    ++Q+LRV   +++   DV    V+   V+ A     ++     VN +
Sbjct: 83  LASGWTLERLDRPMRQILRVGAYELIARPDVPTATVISEYVDVADAFY-DKKEKGFVNGV 141

Query: 128 LR 129
           L 
Sbjct: 142 LD 143


>gi|307710564|ref|ZP_07646999.1| transcription antitermination factor NusB [Streptococcus mitis
           SK564]
 gi|307618672|gb|EFN97813.1| transcription antitermination factor NusB [Streptococcus mitis
           SK564]
          Length = 141

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59
           S    R  +   L  +          ++     +        D      +  +V+     
Sbjct: 8   SRRELRKCAFQALLSLEFGTD-----METACRFAYTHDREDADVQIPAFLLNLVSGIQAQ 62

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
              +D  ++  L S   + R     + LLR+ + +I   D      V+ A+E AK +  +
Sbjct: 63  KEELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121

Query: 118 RHFAKLVNSILRRV 131
           +  A+ +N +L + 
Sbjct: 122 QKSARFINGLLSQF 135


>gi|307206260|gb|EFN84325.1| Putative methyltransferase NSUN4 [Harpegnathos saltator]
          Length = 505

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 23/234 (9%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLR 280
           +++ D ++ +PV         SVLD+CAAPGGKT  ++       + A D    R++++ 
Sbjct: 277 YYLLDGTSILPVLALDLQPGDSVLDMCAAPGGKTLTILQTLMPRLLVANDAQLSRMKRIH 336

Query: 281 CNLDRLHL------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTR 332
             +++             + + DA     K +++ +LVD PC++          ++  + 
Sbjct: 337 NVINQYVNGIGQWQDRLYVTQHDAKTISDKDVYNKILVDVPCTTDRHVLHSDENNIFKST 396

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              + +K    Q  +L   +  +  GG VV+S CSL    ++ VV   L+ +      + 
Sbjct: 397 RLQERLKIPELQAGILTNALKIIPVGGTVVYSTCSLSPIQNDGVVGLALKQAWEETNSIM 456

Query: 393 LNSAYWKSIDMAMALSPEG--WIR----ITPDMLEKIDGVSSGMDGFFAVALRR 440
           +     K++     L   G   +R    + P +              +   + R
Sbjct: 457 IVKDMGKALRPLNCLYKFGNFGLRYGHIVIPTLKNNWGP-------MYFCKIVR 503


>gi|83311445|ref|YP_421709.1| transcription termination factor [Magnetospirillum magneticum
           AMB-1]
 gi|119390781|sp|Q2W4S5|NUSB_MAGMM RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|82946286|dbj|BAE51150.1| Transcription termination factor [Magnetospirillum magneticum
           AMB-1]
          Length = 156

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR---LLSQRDQILVRAIVNVTLR 58
                ARL +  +L  +          L       A      ++  D  L+  +V     
Sbjct: 9   AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAAEPKGRMADPDNSLLNQVVRGVSA 68

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDK 115
            L  ID  +   L    ++ R +  L+ ++R    ++           +   V+ A    
Sbjct: 69  QLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVAHAFY 128

Query: 116 ENRHFAKLVNSILRR 130
                  LVN +L  
Sbjct: 129 SGPE-PGLVNGVLDH 142


>gi|209879317|ref|XP_002141099.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209556705|gb|EEA06750.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 507

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 8/155 (5%)

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
                         K     +++D  CS +G       +        ++K   FQ+K+LL
Sbjct: 354 NIAWYNYLWCVCRAKF----IILDPSCSGSGLPLHKDIIQKDIS-HRLLKLTTFQKKILL 408

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP-LNSAYWKSIDMAMALS 408
             I+       + +S CS+ K+++E+VV   L +S    +LV  ++    K +D+     
Sbjct: 409 HAINNFINVNTICYSTCSIYKEENEDVVIYALNNSKDSFKLVNGIDWWEKKDLDLKCENM 468

Query: 409 PEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441
            +             ++D       GFF   L R 
Sbjct: 469 QDICDLFLQCKIYCIRMDPKIHKCRGFFLAKLLRK 503


>gi|319639180|ref|ZP_07993931.1| N utilization substance protein B [Neisseria mucosa C102]
 gi|317399364|gb|EFV80034.1| N utilization substance protein B [Neisseria mucosa C102]
          Length = 142

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 35/123 (28%), Gaps = 5/123 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR ++   +      + +   +    +  S    + +    L   +       
Sbjct: 1   MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQSSNMDEE---LFNKLFFGAQTH 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L V+  ++  + +     +++ A+E  K      
Sbjct: 58  AEEYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFA 121
              
Sbjct: 118 GHK 120


>gi|171912809|ref|ZP_02928279.1| NusB antitermination factor [Verrucomicrobium spinosum DSM 4136]
          Length = 145

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 11/143 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--D-QILVRAIVNVTLRFLPRID 64
           R  +   L                    +AF  L     D +    ++V        +ID
Sbjct: 10  RQAAMQFLFAHDVHGKVEDT------DRAAFWTLHSATQDIRAHAESLVTGIKTHQVQID 63

Query: 65  AVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
             +   L +    R     + +LR++V ++L+ +V    V++ AVE +K   + +  A  
Sbjct: 64  DCIAATLENFRFERLGVVDRNILRLAVYEMLHTEVPVPVVINEAVEISKVFGDTQTRA-F 122

Query: 124 VNSILRRVSREKIELLQRIAGIS 146
           VN +L ++++         A   
Sbjct: 123 VNGVLDKIAKRIPGRQAPSAPQP 145


>gi|225619886|ref|YP_002721143.1| transcription antitermination protein NusB [Brachyspira
           hyodysenteriae WA1]
 gi|225214705|gb|ACN83439.1| transcription antitermination protein NusB [Brachyspira
           hyodysenteriae WA1]
          Length = 181

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR+ +   L             ++        + + +      R +V  T+  L R
Sbjct: 48  ARRQARIYAVMSLYSYEINDR--KETINEILSFDYDKKIPENIFEFTRTLVEGTINNLER 105

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           ID +++    +  + R +Y  + ++R+S+  +++L D+    V+D AVE +K    ++  
Sbjct: 106 IDNLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEISK-IFSDKDS 164

Query: 121 AKLVNSILR 129
            K VN IL 
Sbjct: 165 YKFVNGILD 173


>gi|193212152|ref|YP_001998105.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327]
 gi|238692614|sp|B3QLL5|NUSB_CHLP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|193085629|gb|ACF10905.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327]
          Length = 164

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 5/137 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +  + +      +                     ++   +  
Sbjct: 1   MKTYRRQLREKIIQALYTLELRDVDTDSATNWLLTKEMAD--DPNAMKFFNHLMKSIIDH 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +        + R     + +LR+++A+ILY  D+     ++ A+E AK+    
Sbjct: 59  REEIDRHIAKHTFNWDMNRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFNST 118

Query: 118 RHFAKLVNSILRRVSRE 134
              +K VN IL  +  +
Sbjct: 119 EKSSKFVNGILDAIFND 135


>gi|156083717|ref|XP_001609342.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154796593|gb|EDO05774.1| conserved hypothetical protein [Babesia bovis]
          Length = 445

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 125/411 (30%), Gaps = 57/411 (13%)

Query: 84  QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143
            LL + V ++ Y                +   + +  +         ++  K+     + 
Sbjct: 39  WLLHIGVDELKYAQTLYQVEHGQKKRYYRYTSDRKSASSNTPLSDTTLTDGKVNKDGCLE 98

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203
             S   +  +E +      +    IS    +     ++            N V       
Sbjct: 99  QESTHTDDVEEHI--DRRFDNGGKISQCNQNSPKGVVSNDCSAFHVTKPDNIVSWLRDVE 156

Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA------ 257
             +          G       V DA      +L    +   +LD+C APGGK        
Sbjct: 157 LYECYSSIPEGTIGLDAASAAVVDA--LRLGELMHASSTRWILDMCCAPGGKLLGTVSAL 214

Query: 258 ---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------- 305
                  +  K+  LD  KRRL+     L +  +     + +                  
Sbjct: 215 RNLNNGETKWKIIGLDTIKRRLDVCASFLKKESVPNTVSVHLQQCRGQDFVEFDGESMIG 274

Query: 306 LFDAVLVDAPCSSTG---------TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            FD +L+DA C+  G                +      +        QR+LL+  I  ++
Sbjct: 275 RFDRILIDAECTHEGSLRSVLRTLKYWGADSLESRFTLEHAENIIANQRELLIHAIKLLR 334

Query: 357 PGGIVVFSNCSLDKQDSE----EVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
           PGG++++S CSL ++ +E     VV +   L+   +P +            D   A+S E
Sbjct: 335 PGGMIIYSTCSLHEEQNEILVANVVNQFADLKFRQLPTKYCEHCLPCSNRKDPWPAVSTE 394

Query: 411 GWI------RITPDM--------------LEKIDGVSSGMDGFFAVALRRL 441
             +         PD                 + D +    DG F VA+ +L
Sbjct: 395 LCLLKCSRESYLPDRSSNDHLCSNMDSPVCVRFDPLGPDTDGIFMVAITKL 445


>gi|188586319|ref|YP_001917864.1| NusB antitermination factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229620365|sp|B2A534|NUSB_NATTJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|179351006|gb|ACB85276.1| NusB antitermination factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 139

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  S  L+  +      +  +   +    A   L+  +   +  +V+ T   L
Sbjct: 1   MSRRT-AREASMKLVFQMAFNDDHVDEVGAEDILAQAKEELNYNNYQYIETVVSRTESNL 59

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
            +ID  ++    +  + R       +LR+++++IL + D+     ++ AVE AK+   ++
Sbjct: 60  QKIDEYIEKFSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTDK 119

Query: 119 HFAKLVNSILRR 130
             +  +N IL +
Sbjct: 120 -ASGYINGILDQ 130


>gi|238898983|ref|YP_002924665.1| transcription termination; L factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259514851|sp|C4K7H4|NUSB_HAMD5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229466743|gb|ACQ68517.1| transcription termination; L factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 151

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 7/151 (4%)

Query: 1   MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M       AR      L      +     + ++E    A +     D    R ++     
Sbjct: 1   MNPSARRRARECVVQALYAWQVSQ---NDIAEVELSFLADQETQGADIAYFRHVLLGVAS 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
            +  +D ++   L           + +LR+++ ++    DV     ++ A+E  K     
Sbjct: 58  DVEALDTLMTPYLSRQFQELGQIEKAILRLAMFELNKRDDVPYKVTINEAIELGKTF-GA 116

Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISII 148
               K +N +L + +    + +Q  +     
Sbjct: 117 DDSHKFINGVLDKAAPIIRKRMQIRSQNGPY 147


>gi|237785587|ref|YP_002906292.1| N utilization substance protein B [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758499|gb|ACR17749.1| N utilization substance protein B [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 192

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRI---SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           S   AR  +  +L     +      +         DS   +L   D      IV+     
Sbjct: 48  SRYKARRRAVDILFEAEFRDQDPVYVVEQRRELSQDSESGVLPVSD--YTATIVSGVAEN 105

Query: 60  LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
           L  ID+ +   L     L R     + ++RVS  ++L+  +V     V   +E A  +  
Sbjct: 106 LDGIDSAIASHLSSTWRLDRIPAVDRAVMRVSTWELLHNEEVPPKVAVSEGIELA-SEYS 164

Query: 117 NRHFAKLVNSILRR 130
                  VN++L  
Sbjct: 165 TDVAPAYVNAVLDD 178


>gi|237750245|ref|ZP_04580725.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374139|gb|EEO24530.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 368

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   AR     +L             ++        + +  + Q     +++      
Sbjct: 1   MATRKQAREAIIQILYAKELGN---DKAIEQAEAFLNAQKIRNKQQDFALNLLHGICNEE 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
            +I  +++  L    L R     + ++++ V ++L  +     +++ A+E  K  
Sbjct: 58  RKIADIINVFLKSWDLSRLGVIEKNIIKLGVYELLQTNTQKAVIINEAIELTKSF 112


>gi|307706079|ref|ZP_07642898.1| transcription antitermination factor NusB [Streptococcus mitis
           SK321]
 gi|307618479|gb|EFN97627.1| transcription antitermination factor NusB [Streptococcus mitis
           SK321]
          Length = 139

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 11/134 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59
           S    R  +   L   +     +       Y           D      +  +V+     
Sbjct: 8   SRRELRKCAFQALMS-LEFGTDMETACHFAYTHDR----EDADVQIPAFLLNLVSGVQAQ 62

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
              +D  ++  L S   + R     + LLR+ + +I   D      V+ A+E AK +  +
Sbjct: 63  KDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121

Query: 118 RHFAKLVNSILRRV 131
           +  A+ +N +L + 
Sbjct: 122 QKSARFINGLLSQF 135


>gi|313887990|ref|ZP_07821668.1| transcription antitermination factor NusB [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845945|gb|EFR33328.1| transcription antitermination factor NusB [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 132

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR+ +   L  +       T  LDL   +  F+   + D   ++  V   L  L  +D  
Sbjct: 6   ARIGAMQALFAMDVNDDFSTDKLDLFMENHEFQG-DEVD--YIKRTVPDILDKLDLVDET 62

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++  L   ++ R     +Q+LR++V + LY  D+ +   ++ AVE A+    +    K +
Sbjct: 63  IEKNLKGWTMARLAKVDRQILRIAVYEFLYKDDIPEEVSINEAVEIARLYSSDE-APKFI 121

Query: 125 NSILRRVSREK 135
           N IL  + R  
Sbjct: 122 NGILGTIYRSF 132


>gi|307704282|ref|ZP_07641201.1| transcription antitermination factor NusB [Streptococcus mitis
           SK597]
 gi|307622193|gb|EFO01211.1| transcription antitermination factor NusB [Streptococcus mitis
           SK597]
          Length = 141

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 11/134 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59
           S    R  +   L   +     +       Y           D      +  +V+     
Sbjct: 8   SRRELRKCAFQALMS-LEFGTDMETACHFAYTHDR----EDADVQIPAFLLNLVSGVQAQ 62

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
              +D  ++  L S   + R     + LLR+ + +I   D      V+ A+E AK +  +
Sbjct: 63  KDELDKQINQHLKSGWIVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121

Query: 118 RHFAKLVNSILRRV 131
           +  A+ +N +L + 
Sbjct: 122 QKSARFINGLLSQF 135


>gi|310779261|ref|YP_003967594.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926]
 gi|309748584|gb|ADO83246.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926]
          Length = 132

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR     LL       +  T +L+       F+ LS+  Q  +    N        
Sbjct: 2   SRKTAREEFFKLLFEAELNEVDATEVLEDFISRDDFK-LSKAGQEFLERYANGVTENKAE 60

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           I   +D  +   +L R     + LL+ +  ++L  DV    V++  VE AK+        
Sbjct: 61  IQRTIDENMTGWTLDRIGNVERTLLKFATYELLKEDVGYEIVINEIVELAKKY-GEEKSH 119

Query: 122 KLVNSILRR 130
           + +N +L +
Sbjct: 120 EFINGVLAK 128


>gi|225075389|ref|ZP_03718588.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens
           NRL30031/H210]
 gi|224953207|gb|EEG34416.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens
           NRL30031/H210]
          Length = 142

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR ++   +      + +   +    +  S    +   D+ L   +       
Sbjct: 1   MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNM---DEELFNKLFFGAQTH 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L V+  ++  + +     +++ A+E  K      
Sbjct: 58  AAEYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFA 121
              
Sbjct: 118 GHK 120


>gi|288574984|ref|ZP_06393341.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570725|gb|EFC92282.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 143

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 15/145 (10%)

Query: 1   MK------SGMNARLVSSHLLSCVMR-KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53
           MK          AR V+  LL  +   K+      L+    +    + +      VRA+V
Sbjct: 1   MKVGRGHYKKHRAREVALQLLYSMDVTKKHDAEKALNDFSFEDEIDVETG-----VRALV 55

Query: 54  NVTLRFLPRIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQA 111
              +  L  ID +++  V+     R     +  +R++V + L    V     +  AVE  
Sbjct: 56  LGVMDHLGEIDNLINVNVVGWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELV 115

Query: 112 KRDKENRHFAKLVNSILRRVSREKI 136
           K         + VN  L R+ R   
Sbjct: 116 K-VFGTDESGRFVNGALARIVRAMP 139


>gi|216264330|ref|ZP_03436322.1| transcription antitermination factor NusB [Borrelia burgdorferi
           156a]
 gi|221217510|ref|ZP_03588981.1| transcription antitermination factor NusB [Borrelia burgdorferi
           72a]
 gi|223889204|ref|ZP_03623793.1| transcription antitermination factor NusB [Borrelia burgdorferi
           64b]
 gi|225549846|ref|ZP_03770808.1| transcription antitermination factor NusB [Borrelia burgdorferi
           118a]
 gi|215980803|gb|EEC21610.1| transcription antitermination factor NusB [Borrelia burgdorferi
           156a]
 gi|221192788|gb|EEE19004.1| transcription antitermination factor NusB [Borrelia burgdorferi
           72a]
 gi|223885453|gb|EEF56554.1| transcription antitermination factor NusB [Borrelia burgdorferi
           64b]
 gi|225369537|gb|EEG98988.1| transcription antitermination factor NusB [Borrelia burgdorferi
           118a]
          Length = 145

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 60/142 (42%), Gaps = 5/142 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M      R+++   +  +   + ++  + D+    D    + ++  +    ++V  T   
Sbjct: 1   MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNN 60

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116
           L  ID+++  + L  SL R       +LR+ V  + + +  +    ++D A+  AK+   
Sbjct: 61  LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-G 119

Query: 117 NRHFAKLVNSILRRVSREKIEL 138
           +++  K +N IL  + +     
Sbjct: 120 SKNSYKFINGILDALLKNMESC 141


>gi|86741891|ref|YP_482291.1| NusB antitermination factor [Frankia sp. CcI3]
 gi|119390771|sp|Q2J830|NUSB_FRASC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86568753|gb|ABD12562.1| NusB antitermination factor [Frankia sp. CcI3]
          Length = 135

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
               +V   +     ID  +       +L R     + +LR++V ++L+  DV D   +D
Sbjct: 24  YAVELVEGVVERRGEIDERIARYAEGWTLERMPPVDRNILRIAVLELLWRPDVPDRVAID 83

Query: 106 LAVEQAKRDKENRHFA 121
            AVE AK    +R  A
Sbjct: 84  EAVELAKNLSTHRSPA 99


>gi|310658653|ref|YP_003936374.1| transcription antitermination protein [Clostridium sticklandii DSM
           519]
 gi|308825431|emb|CBH21469.1| transcription antitermination protein [Clostridium sticklandii]
          Length = 133

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R  +  L   +  ++            ++    L       ++ + +  L   
Sbjct: 1   MK-RKELREAAVKLFYEMDIQKTFEHKFYKNFLAENELVALKDN---YLKEVFDNFLLNR 56

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID ++        + R       +LRV++ +ILYL D+ D   ++ A++ AK+   + 
Sbjct: 57  DNIDDIIQKSSTSWDIKRIAKVDLSILRVAITEILYLSDIPDKVSINEAIDLAKKY-GDE 115

Query: 119 HFAKLVNSILRR 130
           +  K VN +L +
Sbjct: 116 NSYKFVNGLLGK 127


>gi|93007217|ref|YP_581654.1| NusB antitermination factor [Psychrobacter cryohalolentis K5]
 gi|119390802|sp|Q1Q833|NUSB_PSYCK RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|92394895|gb|ABE76170.1| NusB antitermination factor [Psychrobacter cryohalolentis K5]
          Length = 315

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55
            AR  +   L   +           L +  +A   ++ R +               ++  
Sbjct: 15  KARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMRD 74

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114
               +  +DA++   L   + +       +L V   ++   L++    V+D A++     
Sbjct: 75  IPEQIDALDALISQHLDREINKLDTVEHAILLVGAYELQNRLEIPYKVVLDEAMKL-NNH 133

Query: 115 KENRHFAKLVNSILRRV 131
                  KL+N++L R+
Sbjct: 134 FGATDAHKLINAVLDRM 150


>gi|289168504|ref|YP_003446773.1| transcription termination factor nusB [Streptococcus mitis B6]
 gi|288908071|emb|CBJ22911.1| transcription termination factor nusB [Streptococcus mitis B6]
          Length = 139

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59
           S    R  +   L  +          ++     +        D      +  +V+     
Sbjct: 8   SRRELRKCAFQALMSLE-----FDTDVETACHFAYTHDREDADVQIPAFLLNLVSGVQTQ 62

Query: 60  LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
              +D  ++  L    ++ R     + LLR+ + +I   D      V+ A+E AK +  +
Sbjct: 63  KDELDKQINQHLKPGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121

Query: 118 RHFAKLVNSILRRV 131
           +  A+ +N +L + 
Sbjct: 122 QKSARFINGLLSQF 135


>gi|309799755|ref|ZP_07693969.1| transcription antitermination factor NusB [Streptococcus infantis
           SK1302]
 gi|308116621|gb|EFO54083.1| transcription antitermination factor NusB [Streptococcus infantis
           SK1302]
          Length = 140

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +   L  +      L       Y          +    +  +V+        
Sbjct: 8   SRRELRKCAFQALMSLEY-GSDLETACRFAYTHDREDT-DVQLPNFLVELVSGVQAKKDD 65

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L    ++ R     + LLR+ V +I   D      V+ A+E AK    ++  
Sbjct: 66  LDKQITQHLKTGWTINRLTLVEKNLLRLGVFEITSFDTPQLVAVNEAIELAKSF-SDQKS 124

Query: 121 AKLVNSILRRV 131
           A+ +N +L + 
Sbjct: 125 ARFINGLLSQF 135


>gi|291544835|emb|CBL17944.1| transcription antitermination factor NusB [Ruminococcus sp. 18P13]
          Length = 138

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M   +    R  +  L+   + +   +  L            ++  DQ  VR +V  TL 
Sbjct: 1   MSSMTRREVRDCAFKLIFEKLLRDDPIEEL---YAIADEVDEITVNDQ--VRELVEGTLD 55

Query: 59  FLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
               +D ++        L R       +LR+++ +ILY +     A ++ AV+ ++  
Sbjct: 56  KTEELDRIISEYSSKRGLSRIAKINIAVLRIALYEILYDEKTPMNAAINEAVQLSQTY 113


>gi|259479158|dbj|BAI40114.1| NOL1/NOP2/Sun domain family 2 protein [Brachionus plicatilis]
          Length = 78

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
           ++  + +  +KPGG++V+S CSL+  ++E VV  +L S    +E+V         +    
Sbjct: 2   RIAKRAVELLKPGGLMVYSTCSLNPVENESVVHNLLESFTDQIEIVDARDXLP-GLKTVN 60

Query: 406 ALSPEGWIR 414
            L    ++R
Sbjct: 61  GLFKWQFMR 69


>gi|261380112|ref|ZP_05984685.1| transcription antitermination factor NusB [Neisseria subflava
           NJ9703]
 gi|284797333|gb|EFC52680.1| transcription antitermination factor NusB [Neisseria subflava
           NJ9703]
          Length = 142

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 5/123 (4%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR ++   +      + +   +       S    +   D+ L   +       
Sbjct: 1   MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIRELSQAPNM---DEELFNKLFFGAQTH 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L V+  ++  + +     +++ A+E  K      
Sbjct: 58  AEEYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFA 121
              
Sbjct: 118 GHK 120


>gi|315639636|ref|ZP_07894776.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
 gi|315484597|gb|EFU75053.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
          Length = 150

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRA----I 52
           M       + R ++   L  +           +      + + LL + ++  V      +
Sbjct: 1   MSKELSRHDIREMAVQSLFPLDFSTEFSKQDAIAHAIEVNQYDLLDEEEENFVPDYLDWL 60

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109
           V+        +D  ++  L     + R       +LR+++ ++ +  DV +  V++ A+E
Sbjct: 61  VSGVCEHKNELDKEIESFLRPGWKIGRLAKMDVTILRLAIFEMQHAEDVPNKVVLNEAIE 120

Query: 110 QAKRDKENRHFA 121
             K   +++   
Sbjct: 121 LTKTFSDDQSRK 132


>gi|224534018|ref|ZP_03674602.1| transcription antitermination factor NusB [Borrelia burgdorferi
           CA-11.2a]
 gi|224512854|gb|EEF83221.1| transcription antitermination factor NusB [Borrelia burgdorferi
           CA-11.2a]
          Length = 145

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 60/142 (42%), Gaps = 5/142 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M      R+++   +  +   + ++  + D+    D    + ++  +    ++V  T   
Sbjct: 1   MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNN 60

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116
           L  ID+++  + L  SL R       +LR+ V  + + +  +    ++D A+  AK+   
Sbjct: 61  LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAKKY-G 119

Query: 117 NRHFAKLVNSILRRVSREKIEL 138
           +++  K +N IL  + +     
Sbjct: 120 SKNSYKFINGILDALLKNMESC 141


>gi|320105797|ref|YP_004181387.1| NusB antitermination factor [Terriglobus saanensis SP1PR4]
 gi|319924318|gb|ADV81393.1| NusB antitermination factor [Terriglobus saanensis SP1PR4]
          Length = 146

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCL----LDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M +   +R ++  +L      + S   +     +    ++    +    Q     +  V 
Sbjct: 1   MGTRRKSRELAMQMLFQADLGKQSSEDVQKSFWNAREDEAGKATIDADTQGFAEDLFRVA 60

Query: 57  LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114
           +     ID +L+    +  + R     + LLR++VA+++ Y       +++ A+E  +R 
Sbjct: 61  MVKQEEIDTLLEEHAQNWRVARMAAVDRNLLRMAVAEMIGYPSTPHPIIINEALEIGRRY 120

Query: 115 KENRH 119
                
Sbjct: 121 AAPES 125


>gi|224532931|ref|ZP_03673541.1| transcription antitermination factor NusB [Borrelia burgdorferi
           WI91-23]
 gi|224512130|gb|EEF82521.1| transcription antitermination factor NusB [Borrelia burgdorferi
           WI91-23]
          Length = 145

 Score = 70.3 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M      R+++   +  +   + ++  + D+    D    + ++  +    ++V  T   
Sbjct: 1   MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNN 60

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116
           L  ID+++  + L  SL R       +LR+ V  + + +  +    ++D A+  AK+   
Sbjct: 61  LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-G 119

Query: 117 NRHFAKLVNSILRRVSREK 135
           +++  K +N IL  + +  
Sbjct: 120 SKNSYKFINGILDALLKNM 138


>gi|194335654|ref|YP_002017448.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693383|sp|B4SCZ7|NUSB_PELPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|194308131|gb|ACF42831.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
          Length = 171

 Score = 70.3 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 5/137 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +  +   +         +                ++      
Sbjct: 1   MKTYRRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILA--DPNAMKFFNMLLKNIKEH 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
           +  ID  +        + R     + ++R+++ +ILY  D+     ++ A+E AK+    
Sbjct: 59  MEEIDRYIVKHTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNST 118

Query: 118 RHFAKLVNSILRRVSRE 134
              +K VN IL  +  +
Sbjct: 119 DKSSKFVNGILDAIFND 135


>gi|116515210|ref|YP_802839.1| hypothetical protein BCc_285 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285394|sp|Q057F3|NUSB_BUCCC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116257064|gb|ABJ90746.1| transcription termination [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 142

 Score = 70.3 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     AR ++  +L      +  +  L + E            D+I    IV   ++ 
Sbjct: 1   MKSKRRKARELAIQVLYSWQISKKIV--LFETEKYVIEQNKKYSLDKIYFHKIVTGVIKN 58

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
           +  ID ++   +     R  Y  Q +LR++  +I+  LD+    +++  +E AK    N+
Sbjct: 59  IFYIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNK 118

Query: 119 HFA 121
              
Sbjct: 119 SHK 121


>gi|219685303|ref|ZP_03540122.1| transcription antitermination factor NusB [Borrelia garinii Far04]
 gi|219673076|gb|EED30096.1| transcription antitermination factor NusB [Borrelia garinii Far04]
          Length = 142

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 57/138 (41%), Gaps = 5/138 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRI 63
              R+++   +  +   + ++  + D+   +     +  +  +    ++VN T   L  I
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFTIEDKGLDIENESIKSFYSSLVNGTFNNLEYI 61

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120
           D ++  +    SL R       +LR+ V  + + +  +    ++D A+  AK+   +++ 
Sbjct: 62  DNLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKY-GSKNS 120

Query: 121 AKLVNSILRRVSREKIEL 138
            K +N IL  + +     
Sbjct: 121 DKFINGILDALLKNMENC 138


>gi|294055107|ref|YP_003548765.1| NusB antitermination factor [Coraliomargarita akajimensis DSM
           45221]
 gi|293614440|gb|ADE54595.1| NusB antitermination factor [Coraliomargarita akajimensis DSM
           45221]
          Length = 153

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 8   RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID-A 65
           R  +   L      +   L   + + +     +  S+        +++  L  + +ID  
Sbjct: 18  RTCAVQFLYQWEMNKPDELNDAIAVFFE---GQGFSRNYYAFSEELIHGALDNIAKIDDE 74

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++      +  R       +LR+++ ++LY  D+     ++ A++ +K    N    + +
Sbjct: 75  IMSHANNWTFDRIAKIDLSILRLAIYELLYRTDIPPIVSINEAIDLSK-VFSNPDSKRFI 133

Query: 125 NSILRRVSREKIEL 138
           N IL ++  +    
Sbjct: 134 NGILDKMKDKINRP 147


>gi|322817935|gb|EFZ25505.1| hypothetical protein TCSYLVIO_8335 [Trypanosoma cruzi]
          Length = 561

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 46/177 (25%)

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-- 360
            +  F  +L+D PC+  G   R            I  SA +QRKL    +  ++  G   
Sbjct: 375 WECEFHGILLDPPCTGMGL--RPKLNAHLITPQGIRDSADYQRKLFDSCVKMLRRTGTSV 432

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPV-------------------------------- 388
           +V+S C++   ++E  V   L + P                                   
Sbjct: 433 LVYSTCTITLDENEANVLWALNTYPFLRLARAKTNDKKRLCLLGSTNFANGRRFLLEEEI 492

Query: 389 -------ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                  EL+  ++A  +  D     +P   +R  P +         G+ GFF    
Sbjct: 493 QKAQRRNELLESHTASTERGDTDEPENPLMILRFMPGL--STMPEEDGV-GFFLAVF 546


>gi|71664344|ref|XP_819153.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884443|gb|EAN97302.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 561

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 46/177 (25%)

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-- 360
            +  F  +L+D PC+  G   R            I  SA +QRKL    +  ++  G   
Sbjct: 375 WECEFHGILLDPPCTGMGL--RPKLNAHLITPQGIRDSADYQRKLFDSCVKMLRRTGTSV 432

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPV-------------------------------- 388
           +V+S C++   ++E  V   L + P                                   
Sbjct: 433 LVYSTCTITLDENEANVLWALNTYPFLRLARAKTNDKKRLCLLGSTNFANGRRFLLEEEI 492

Query: 389 -------ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                  EL+  ++A  +  D     +P   +R  P +         G+ GFF    
Sbjct: 493 QKAQRRNELLESHTASTERGDTDEPENPLMILRFMPGL--STMPEEDGV-GFFLAVF 546


>gi|293376577|ref|ZP_06622805.1| transcription antitermination factor NusB [Turicibacter sanguinis
           PC909]
 gi|325839451|ref|ZP_08166890.1| transcription antitermination factor NusB [Turicibacter sp. HGF1]
 gi|292644803|gb|EFF62885.1| transcription antitermination factor NusB [Turicibacter sanguinis
           PC909]
 gi|325490571|gb|EGC92887.1| transcription antitermination factor NusB [Turicibacter sp. HGF1]
          Length = 159

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 24/133 (18%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLD------LEYGDSAFRLLSQR---------------DQ 46
           R  +   L  +   +++    ++          + A  L+++                D 
Sbjct: 7   RQFAVQTLYQMEVGQLTREEAIENIELMVESLKEEAIELMAEEVTPHQALQMEQTFKLD- 65

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVV 104
                +VN  L    ++D +++  L   SL R     + +LR++  ++ Y  D A   V+
Sbjct: 66  EFYFELVNGVLTHKEQLDQIINDNLRGWSLSRLNKVDKAILRLATYEMKYCQDTAKKIVI 125

Query: 105 DLAVEQAKRDKEN 117
           D A+E  K   + 
Sbjct: 126 DEALELTKEFSDT 138


>gi|240850687|ref|YP_002972087.1| transcription antitermination protein NusB [Bartonella grahamii
           as4aup]
 gi|240267810|gb|ACS51398.1| transcription antitermination protein NusB [Bartonella grahamii
           as4aup]
          Length = 156

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56
                ARL +   L  +      +             + +      + D     AI+   
Sbjct: 14  NKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQYLEADFQWFLAIITGV 73

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
           ++   ++D +L   L    SL R    L+ +LR  + +++   DV    V++  V+ AK 
Sbjct: 74  VKDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAGLWELINRKDVPVAVVMNEYVDIAKA 133

Query: 114 DKENR 118
             E  
Sbjct: 134 FFEGD 138


>gi|150016575|ref|YP_001308829.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
 gi|189035883|sp|A6LU43|NUSB_CLOB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|149903040|gb|ABR33873.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
          Length = 133

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + +R  +  LL  +   + ++   ++    +     + + D   V+ ++       
Sbjct: 1   MNRKL-SREKAMELLFGMTLSKDTMEDAVEAFVENYEG-DIKEIDLTYVKQVLIGVNNNK 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID V+   L +  + R       +LR++  ++LY  +V     ++ A+E  +R  + +
Sbjct: 59  EAIDKVIQENLHNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEK 118

Query: 119 HFAKLVNSILRRVSRE 134
             +  +N +L ++ ++
Sbjct: 119 SVS-FINGVLDKIKQD 133


>gi|332294978|ref|YP_004436901.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796]
 gi|332178081|gb|AEE13770.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796]
          Length = 134

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 1   MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK  +   R +   +L  +     S   +L   Y +     +   D   +R      +  
Sbjct: 1   MKKSLRYLREMVLKILYELEINSQSTINVLMQRYAEH----IQPEDFEFIRVRAEGIIEN 56

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              ID +LD +       R   + + ++ ++V ++ YL ++    ++ AVE +K      
Sbjct: 57  KDAIDKLLDELSIDWPTERMVVTDRLIMEIAVFEMNYLKLSPSIAINEAVELSK-LYGTE 115

Query: 119 HFAKLVNSILRR 130
              K VN++L +
Sbjct: 116 KSYKFVNAVLSK 127


>gi|15594453|ref|NP_212241.1| transcription antitermination protein NusB [Borrelia burgdorferi
           B31]
 gi|7387971|sp|O51134|NUSB_BORBU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|2687995|gb|AAC66498.1| N-utilization substance protein B (nusB) [Borrelia burgdorferi B31]
          Length = 145

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M      R+++   +  +   + ++  + D+    D    + ++  +    ++V  T   
Sbjct: 1   MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFDN 60

Query: 60  LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116
           L  ID+++  + L  SL R       +LR+ V  + + +  +    ++D A+  AK+   
Sbjct: 61  LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-G 119

Query: 117 NRHFAKLVNSILRRVSREK 135
           +++  K +N IL  + +  
Sbjct: 120 SKNSYKFINGILDALLKNM 138


>gi|320534351|ref|ZP_08034838.1| transcription antitermination factor NusB [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133433|gb|EFW25894.1| transcription antitermination factor NusB [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 163

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTL 57
            +   AR  +  +L    ++ +  +   +     +  R +S  +        R I+N   
Sbjct: 21  TARTKARRRAIEILFEADQRGMLSSEGTEELRSFAQLRAVSSANHTEAPLYTREILNGVC 80

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
             L  ID  +       +L R     + + RV+  +I+Y  DV     VD A+  ++   
Sbjct: 81  DHLADIDETIQTYAQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVGVDEAMTLSRMLS 140

Query: 116 ENRH 119
            +  
Sbjct: 141 TDES 144


>gi|66828039|ref|XP_647374.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
 gi|60475454|gb|EAL73389.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
          Length = 680

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 16/107 (14%)

Query: 341 ACFQRKLLLQ--GISFVKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPIPVELVPLNS 395
           A FQ  ++        VK    V++S CS  + ++E+VV++    L       ++V +  
Sbjct: 451 ADFQLSIIQHSFAFPNVKK---VIYSTCSTHQVENEDVVKRAIDELNKDGEKWKVVKILP 507

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            +  S  + +  + +  IR+TP     I        GFF     ++I
Sbjct: 508 HWTNSRGLPIYKNSDYSIRMTPSKDFTI--------GFFVALFEKII 546



 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 115/356 (32%), Gaps = 39/356 (10%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++ ++  +++K+ S+  L      +               A+V  TL++   ID +++
Sbjct: 6   QQAADVIEQLIQKKGSIKGLTYNRNVNVKTSKT-------CYALVCETLKYKGVIDQIIE 58

Query: 69  --FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
               L     + K     LL V + ++L+           A +     +   + A     
Sbjct: 59  LTAGLEKEFKKNKTIKYSLLVVMIYELLFSANGKIKGGGQAKKLLSHYQAPINSALARMK 118

Query: 127 ILRRVSREKIELLQRIAGISIIPEW-FKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
           I ++VS     L   I     +P +     L N   +  +  + +  ++    +L  K  
Sbjct: 119 IQKKVSENIDLLPDNIRYPITLPRYVRVNTLFNDCDENCIKNVIEHFVNVEGFELLSKPP 178

Query: 186 IET----------------------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223
                                       K     L    I +      +        G  
Sbjct: 179 KLQTKSITIKKENGTVEQQQQTTIILGEKEFYQDLDFPEILIFHHAVDLHDHKMLLNGQI 238

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLR 280
            +QD ++ +P  +         +D C+APG KT   +  + +  K+ A++   +R   L 
Sbjct: 239 ILQDKASCLPSFILSPPPGSVCIDSCSAPGNKTSLLSAQMKNTGKIFAIEKDTKRCGTLI 298

Query: 281 CNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332
               R      + I         D    K  + +L D  CS +G + R   +L T+
Sbjct: 299 KLTKRSLCKNIETINDSFLNLKHDDPKFKDVEYILCDPSCSGSGIVNRLDYLLPTK 354


>gi|221055944|ref|XP_002259110.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809181|emb|CAQ39883.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 570

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 16/194 (8%)

Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--- 304
           +  +                A + ++ R ++L+  L +                      
Sbjct: 305 ITCSLDMVNYYTTNRQGFFVANEFNRVRYDRLKQVLSKHLPKDLLTSNNFHVTNYNGLNV 364

Query: 305 ------KLFDAVLVDAPCSSTG--TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                 + F  +L+D PCS+      ++  D+L       I  +A  Q +LL      + 
Sbjct: 365 NSFLRFQRFHKILLDVPCSTDEHLIKKKKNDLLNKWTDKVIKNNASVQFELLNNSFQLLH 424

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416
             G +V+S C+L  Q+++ V++K+L+     V++V      ++        S +   R+ 
Sbjct: 425 TNGTLVYSTCALSHQENDHVIEKLLKKYKKQVQIVDFVKEEYQ-----KRFSRDDCDRLF 479

Query: 417 PDMLEKIDGVSSGM 430
             +           
Sbjct: 480 SALFAGQPVEEDPT 493


>gi|71656502|ref|XP_816797.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881949|gb|EAN94946.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 561

 Score = 69.9 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 46/187 (24%)

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               +  D   +  F  +L+D PC+  G   R            I  SA +QRKL    +
Sbjct: 365 TQCDEDVDSMWECEFHGILLDPPCTGMGL--RPKLNSHLITPQGIRDSADYQRKLFDSCV 422

Query: 353 SFVKPGGI--VVFSNCSLDKQDSEEVVQKVLRSSPIPV---------------------- 388
             ++  G   +V+S C++   ++E  V   L + P                         
Sbjct: 423 KMLRRTGTSVLVYSTCTITLDENEANVLWALNTYPFLRLARAKTNDKRRLCLLGSTNFAN 482

Query: 389 -----------------ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
                            EL+  ++   +  D     +P   +R  P +         G+ 
Sbjct: 483 GRRFLLEEEIQKAQRRNELLESHTVSTERGDTDEPENPLMILRFMPGL--STMPEEDGV- 539

Query: 432 GFFAVAL 438
           GFF    
Sbjct: 540 GFFLAVF 546


>gi|67921757|ref|ZP_00515274.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501]
 gi|67856349|gb|EAM51591.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501]
          Length = 209

 Score = 69.9 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R    ID  L+ VL    L R     Q +LR++VA+IL+LD+ +   +
Sbjct: 117 RQYAIELIATVARRRNDIDQQLEVVLKDWQLKRLAKIDQDILRLAVAEILFLDIPEKVAI 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           + AVE AKR  ++  + + +N +LRR + +  +
Sbjct: 177 NEAVELAKRYSDDDGY-RFINGVLRRFTDQMKQ 208


>gi|84515388|ref|ZP_01002750.1| putative N utilization substance protein B [Loktanella
           vestfoldensis SKA53]
 gi|84510671|gb|EAQ07126.1| putative N utilization substance protein B [Loktanella
           vestfoldensis SKA53]
          Length = 155

 Score = 69.9 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 21/147 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV---TL 57
           MKS   AR  +   L  +     ++  ++          ++          +V     T 
Sbjct: 11  MKS--AARFYAVQALFQMEATGQTVEGIVREFEDHRFGEIIDDV------ELVEGDVDTF 62

Query: 58  RF--------LPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107
           R            ID + D  L     + R   + + L R + A++L  D     V+   
Sbjct: 63  RRMMDRAVDLQASIDQMTDRALVEKWPIARIDPTWRALFRAAGAELLDKDTPPKVVISEF 122

Query: 108 VEQAKRDKENRHFAKLVNSILRRVSRE 134
           V  A+    +    K VN++L  ++R+
Sbjct: 123 VAVAEAFSHDGKEPKFVNAVLDHMARQ 149


>gi|154502455|ref|ZP_02039515.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
 gi|153796851|gb|EDN79271.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
          Length = 132

 Score = 69.9 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
               R     +L  +     +L  +   L+L + +       ++D+  ++  +   +  L
Sbjct: 3   RTELREHIFKMLFQIEFN--TLEEMPKHLELYFEELTSAK--EKDKEYIQKKLEAVVEKL 58

Query: 61  PRIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             IDA+L+         R       +LR++V +I +  DV     ++ AVE AK+     
Sbjct: 59  EEIDAILNEKATGWKTSRMNKVDLAILRLAVYEIKWDDDVPVKVAINEAVELAKKFSGEE 118

Query: 119 HFA 121
             A
Sbjct: 119 GPA 121


>gi|227534863|ref|ZP_03964912.1| transcription antitermination protein NusB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187619|gb|EEI67686.1| transcription antitermination protein NusB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 139

 Score = 69.9 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57
           M + M +R    H +     + +           D+ +  +  +D      +  +V   L
Sbjct: 1   MTNKMESR----HAIREAAFQALFALATNPEADKDAVYAEVLPQDTEVPAYLTTLVEGVL 56

Query: 58  RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
                +DA L   L     L R       +LR+ + +I Y + + + A ++ A+  AKR 
Sbjct: 57  SKQADLDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLAKRY 116

Query: 115 KENRHFAKLVNSILRRVSR 133
            +++  AK VN IL    +
Sbjct: 117 SDDQS-AKFVNGILANFIQ 134


>gi|116618710|ref|YP_819081.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432118|ref|ZP_03914130.1| transcription antitermination protein NusB [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|116097557|gb|ABJ62708.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227352145|gb|EEJ42359.1| transcription antitermination protein NusB [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 137

 Score = 69.9 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           +   +R  +  +L  + +   S  +  L ++      F     R       +VN  L   
Sbjct: 5   TRHESRQAAFQVLFALEKDPQSNKIDDLYEIVLNGKQFDDYLPR-------LVNGVLGSK 57

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
             +D  +   L     + R   +   +LR+++ ++  ++       +D A+E AK   + 
Sbjct: 58  ADLDEKISSHLAEGWAINRINKADLVILRLAIYELTAVEATPYKVAIDEAIELAKTFADE 117

Query: 118 RHFA 121
               
Sbjct: 118 DDRK 121


>gi|320536419|ref|ZP_08036456.1| transcription antitermination factor NusB [Treponema phagedenis
           F0421]
 gi|320146729|gb|EFW38308.1| transcription antitermination factor NusB [Treponema phagedenis
           F0421]
          Length = 136

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R+++   L      + S   L+  E+ ++    +S+   +  + +   TL  L  ID  +
Sbjct: 9   RILAFQALFAWDFGQSSPEELVQFEWFETK-EPVSEEAFLFPKMLFLGTLEHLEEIDTHI 67

Query: 68  DFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
              L +    R   + + ++R+ V  +L+  D     V+D AV  A+    +  F 
Sbjct: 68  KNNLHNWDFDRLNKADKAIIRLGVYSLLFQKDTPSAIVIDEAVNLARSFGTDDSFK 123


>gi|145220268|ref|YP_001130977.1| NusB antitermination factor [Prosthecochloris vibrioformis DSM 265]
 gi|189035896|sp|A4SG66|NUSB_PROVI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|145206432|gb|ABP37475.1| NusB antitermination factor [Chlorobium phaeovibrioides DSM 265]
          Length = 164

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 5/136 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +  +   +                  +       ++      
Sbjct: 1   MKTYRRQIREKILQALYTLELRDTDIDSAAGWLLTPEILA--DPKAMKFFNLLLGNIKEH 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117
           +  ID  +        + R     + +LR+++A++LY  D+     ++ A+E AK+    
Sbjct: 59  MEEIDRYIAAHTFNWDMSRIAIIDKNILRMAMAELLYCDDIPPKVSINEAIEIAKKFSST 118

Query: 118 RHFAKLVNSILRRVSR 133
              +K VN IL  +  
Sbjct: 119 DKSSKFVNGILDAIFN 134


>gi|317505974|ref|ZP_07963806.1| transcription antitermination factor NusB [Segniliparus rugosus
           ATCC BAA-974]
 gi|316255750|gb|EFV14988.1| transcription antitermination factor NusB [Segniliparus rugosus
           ATCC BAA-974]
          Length = 166

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   ARL +  LL     + +    L      +    L + +       ++      L  
Sbjct: 15  SRRKARLRAVELLFEAEARDLDPAELAAERSAELVKDLSAPQLTPYALVVLEGVRDHLEV 74

Query: 63  IDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           +D  +   L    SL R     + +LRV+V ++L+  +V     VD A+E AK       
Sbjct: 75  VDQTISDHLRGDWSLNRLPAVDRSILRVAVWELLFAPEVPTAVAVDEALELAKG-LSTDE 133

Query: 120 FAKLVNSILRR 130
               +N +L R
Sbjct: 134 SPGFINGVLGR 144


>gi|257869052|ref|ZP_05648705.1| antitermination protein NusB [Enterococcus gallinarum EG2]
 gi|257803216|gb|EEV32038.1| antitermination protein NusB [Enterococcus gallinarum EG2]
          Length = 150

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILV----RAI 52
           M         R ++   L  +   +  +    +          L+ +  +  V      +
Sbjct: 1   MSKELSRHEIRKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPAYLDQL 60

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109
           V    ++   +D V+   L     + R       +LR+++ +++Y+D V +   ++ A+E
Sbjct: 61  VAGVCQYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMVYVDNVPNRVALNEAIE 120

Query: 110 QAKRDKENRHFAKLVNSILRR 130
            AK   +++     VN IL  
Sbjct: 121 LAKTFSDDQSRK-FVNGILSN 140


>gi|195941845|ref|ZP_03087227.1| transcription antitermination protein NusB [Borrelia burgdorferi
           80a]
 gi|225549246|ref|ZP_03770219.1| transcription antitermination factor NusB [Borrelia burgdorferi
           94a]
 gi|225370104|gb|EEG99544.1| transcription antitermination factor NusB [Borrelia burgdorferi
           94a]
          Length = 142

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              R+++   +  +   + ++  + D+    D    + ++  +    ++V  T   L  I
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNNLEHI 61

Query: 64  DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120
           D+++  + L  SL R       +LR+ V  + + +  +    ++D A+  AK+   +++ 
Sbjct: 62  DSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-GSKNS 120

Query: 121 AKLVNSILRRVSREKIEL 138
            K +N IL  + +     
Sbjct: 121 YKFINGILDALLKNMESC 138


>gi|293607587|ref|ZP_06689921.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814020|gb|EFF73167.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 169

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 12  SHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              +   + R         +++         S+ D    + +++  LR  P +       
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAHLRDTEDFSEADAQWFKTLLHGVLREAPTLRERFTPY 91

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +   L         +L +   ++++  +V     ++ AVE AK       F 
Sbjct: 92  VDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGFK 143


>gi|226320701|ref|ZP_03796259.1| transcription antitermination factor NusB [Borrelia burgdorferi
           29805]
 gi|226233917|gb|EEH32640.1| transcription antitermination factor NusB [Borrelia burgdorferi
           29805]
          Length = 693

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRI 63
              R+++   +  +   + ++  + D+   +     +  +  +    ++V  T   L  I
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVIGTFNNLEHI 61

Query: 64  DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120
           D+++  + L  SL R       +LR+ V  + + +  +    ++D A+  AK+   +++ 
Sbjct: 62  DSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-GSKNS 120

Query: 121 AKLVNSILRRVSREKIEL 138
            K +N IL  + +     
Sbjct: 121 YKFINGILDALLKNMESC 138


>gi|322436555|ref|YP_004218767.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9]
 gi|321164282|gb|ADW69987.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9]
          Length = 140

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M +   +R ++  +L      + +   +   +   S+   + +  +     +  +     
Sbjct: 1   MGTRRKSRELTMQMLFQGDLGKQTPEQV--TKLFWSSVTDVDEETRGFAEDLYRIATSRG 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
             IDA+++    +  L R     + LLR ++A++L +       V++ ++E A+R     
Sbjct: 59  TEIDALIEEHSQNWRLERMPVVDRNLLRSAIAEMLGFPKTPHAIVINESLEVARRYAAPE 118

Query: 119 HFA 121
              
Sbjct: 119 SIH 121


>gi|291296745|ref|YP_003508143.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
 gi|290471704|gb|ADD29123.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
          Length = 152

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCL-------LDLEYGDSAFRLLSQRDQILVRAIVNVT 56
              AR ++  +L       + L          ++ E  D    +L     +  + +V   
Sbjct: 2   RRKARELAFKVLFEHAVGGVPLEAAWQHATQEVEPEEADQEADVLDHEGLLFAQRLVQGY 61

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
                 +D  L   +   S  +   +   +LR++  ++L+       ++++AV+ AKR  
Sbjct: 62  AAQQQTVDEALASTIEGWSFSQMAKTDLAVLRLATYEMLFEPTPYAPLIEVAVKIAKRY- 120

Query: 116 ENRHFAKLVNSILRR 130
                 + VN +L R
Sbjct: 121 GGEDSGRFVNGVLAR 135


>gi|84688074|ref|ZP_01015933.1| putative N utilization substance protein B [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84663924|gb|EAQ10429.1| putative N utilization substance protein B [Rhodobacterales
           bacterium HTCC2654]
          Length = 168

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 11/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVN 54
           MKS   +RL +   L  +         +   E+ D  F    +  +       L RAI+ 
Sbjct: 24  MKS--ASRLYAVQALFQMEAAGQGYDRV-RKEFEDHRFGAEYEEGEFEEGNVDLFRAILG 80

Query: 55  VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
             +    +ID + D  L     + R   +L+ L R + A+++  D     V+   VE AK
Sbjct: 81  EAVDRQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVLGDTPPKVVIVEFVEVAK 140

Query: 113 RDKENRHFAKLVNSILRRV 131
                 H  K  N++L  +
Sbjct: 141 AFFPEGHEPKFTNAVLDHM 159


>gi|158522086|ref|YP_001529956.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3]
 gi|226738897|sp|A8ZTU6|NUSB_DESOH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|158510912|gb|ABW67879.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3]
          Length = 154

 Score = 69.5 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   +R ++   L                     A   LS+++      +        
Sbjct: 1   MASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFCARFNLSEKNFPHFFTLAQGVKNRW 60

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +++ +L        L R     + ++R+++ ++LY  DV     ++ A+E  K+     
Sbjct: 61  EKLNDLLAESSEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEIGKKY-GTD 119

Query: 119 HFAKLVNSILRRVSR 133
                +N +L R+++
Sbjct: 120 ESGAFINGVLDRINK 134


>gi|257885163|ref|ZP_05664816.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
 gi|257821015|gb|EEV48149.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
          Length = 149

 Score = 69.5 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 3   SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILV----RAIVNVTL 57
           S    R ++   L  +     ++    +          ++++ +   V      +V    
Sbjct: 6   SRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLDTLVGGVC 65

Query: 58  RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                +D V++  L ++  + R       +LR+++ ++ Y  DV     ++ A+E AK  
Sbjct: 66  AKKDELDKVIEKHLKNNWHINRISKMDLAILRIAIFEMTYVTDVPAAVALNEAIELAKTF 125

Query: 115 KENRHFAKLVNSILRR 130
            ++R     VN +L  
Sbjct: 126 SDDRSRK-FVNGVLSN 140


>gi|297559856|ref|YP_003678830.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844304|gb|ADH66324.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 137

 Score = 69.5 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV- 70
             +L     +  S+  ++          +          ++         RID +LD   
Sbjct: 13  VEVLYEAEVRATSVEDVIRRRRAQPEPPIND-----FTESLARSVDERRERIDELLDTYA 67

Query: 71  LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           +  +L R     + +LR+   ++L+  D+ D   +  AV  AK    +  
Sbjct: 68  IGWTLERMPVVDRNILRMGAYELLWADDIPDGVAIAEAVGVAKELSTDES 117


>gi|224534942|ref|ZP_03675511.1| transcription antitermination factor NusB [Borrelia spielmanii
           A14S]
 gi|224513882|gb|EEF84207.1| transcription antitermination factor NusB [Borrelia spielmanii
           A14S]
          Length = 142

 Score = 69.5 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              R+++   +  +   + ++  + D+    D  F + ++  +    ++VN T   L  I
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGFDIENESIKSFYSSLVNGTFNNLEHI 61

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120
           D+++  +    SL R       +LR+ V  + + +  +    V+D A+  AK+   +++ 
Sbjct: 62  DSLIRNISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKY-GSKNS 120

Query: 121 AKLVNSILRRVSREKIEL 138
            K +N IL  + +     
Sbjct: 121 YKFINGILDALLKNMENC 138


>gi|288817964|ref|YP_003432311.1| transcription antitermination factor [Hydrogenobacter thermophilus
           TK-6]
 gi|288787363|dbj|BAI69110.1| transcription antitermination factor [Hydrogenobacter thermophilus
           TK-6]
 gi|308751562|gb|ADO45045.1| NusB antitermination factor [Hydrogenobacter thermophilus TK-6]
          Length = 134

 Score = 69.5 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  +  +L     K   L  + +     +  +   +  +  +R +V   ++  
Sbjct: 1   MIYKQKARKDAFLILYQWDIKADKLEDITEEYIKSNLIKHSER--RRYIRKLVRTYMQKA 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID+++  +     + R  Y  + +LRV++A+IL++ V     V +   +       + 
Sbjct: 59  SEIDSLISELSQEWDIDRMGYIERNILRVALAEILFVGVKKLKPVIMDYVKLTLKYAGKE 118

Query: 120 FAKLVNSILRR 130
            AK VN +L R
Sbjct: 119 PAKFVNGVLGR 129


>gi|24380206|ref|NP_722161.1| transcription antitermination protein NusB [Streptococcus mutans
           UA159]
 gi|32171640|sp|Q8DSE9|NUSB_STRMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|24378212|gb|AAN59467.1|AE015011_6 putative transcription termination factor [Streptococcus mutans
           UA159]
          Length = 142

 Score = 69.5 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 6/123 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLP 61
           S  + R  +   L  +     +LT                + +    +  ++        
Sbjct: 8   SRRDLRERAFQALFSLEFGGDNLTAA--RFAYTYDKNEEEEAELPLFLLTLIQGVSDCRR 65

Query: 62  RIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            ID  +   L S   L R     + LLR+ + +I Y  +  +   ++  +E AK+  + +
Sbjct: 66  EIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEK 125

Query: 119 HFA 121
              
Sbjct: 126 SSK 128


>gi|71756143|ref|XP_828986.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834372|gb|EAN79874.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|261334917|emb|CBH17911.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 566

 Score = 69.5 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400
           A  QRKLL   +        VV+S CS+ + ++EEVV++VL+   +      L++    +
Sbjct: 456 ARLQRKLLAHSLLSFDNCRTVVYSTCSVHEAENEEVVRQVLQDERVQARGWALSNIMPTT 515

Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
                  +      +  +   + D      +GFF     R++
Sbjct: 516 WRTRGWRNDSDTFPL--EYTIRCDPEVDATNGFFVARFDRVV 555


>gi|218249233|ref|YP_002374635.1| transcription antitermination factor NusB [Borrelia burgdorferi
           ZS7]
 gi|226321982|ref|ZP_03797507.1| transcription antitermination factor NusB [Borrelia burgdorferi
           Bol26]
 gi|218164421|gb|ACK74482.1| transcription antitermination factor NusB [Borrelia burgdorferi
           ZS7]
 gi|226232572|gb|EEH31326.1| transcription antitermination factor NusB [Borrelia burgdorferi
           Bol26]
 gi|312148021|gb|ADQ30680.1| transcription antitermination factor NusB [Borrelia burgdorferi
           JD1]
          Length = 142

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              R+++   +  +   + ++  + D+    D    + ++  +    ++V  T   L  I
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNNLEHI 61

Query: 64  DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120
           D+++  + L  SL R       +LR+ V  + + +  +    ++D A+  AK+   +++ 
Sbjct: 62  DSLIRDISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAKKY-GSKNS 120

Query: 121 AKLVNSILRRVSREKIEL 138
            K +N IL  + +     
Sbjct: 121 YKFINGILDALLKNMESC 138


>gi|82594878|ref|XP_725610.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480683|gb|EAA17175.1| sun family protein-related [Plasmodium yoelii yoelii]
          Length = 364

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I   + FQ+ +L   +  +K     ++S CS  ++++E+V++ VL  +           
Sbjct: 267 KINNLSNFQKDILNHALITIKTAKTFIYSTCSFFEEENEQVIKNVLEKNMGFYVENAGTD 326

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
            +            +  +R  P+             G F   L R+
Sbjct: 327 KFL--FKNGKYEFSDKCVRTFPN--------RDNCRGIFICKLCRK 362


>gi|124802479|ref|XP_001347482.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23495063|gb|AAN35395.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 601

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLR 280
              +  + +            N +V++     G        +       + S + +    
Sbjct: 386 DFIYKSNMANICLHPYKDDQKNKNVINKYNTKGNNNNNNNNNNNNSDNSNNSNKYILLQS 445

Query: 281 CNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
                         + D    +  K         +     G I + P     +    + K
Sbjct: 446 D-----GHKNIPYNKQDNIISHNNKFDEHKNNSFSDDVLKGNIPKVPTCFINK----VNK 496

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
            + FQ+ +L   I+  K   I ++S CS  ++++E+V+Q VL   P    L      +  
Sbjct: 497 LSEFQKNILTHAINIFKTAKIFIYSTCSFFEEENEQVIQYVLTKYPNIHLLNAGKDKFLF 556

Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
           +      +     +R  P        +     G F   +
Sbjct: 557 T--NGKYVFSNKCVRTFP--------LIHSCRGIFISKM 585


>gi|68071013|ref|XP_677420.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56497533|emb|CAH97664.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 480

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 13/107 (12%)

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-PIPVELVPLN 394
            I   + FQ+ +L   +  +K     V+S CS  ++++E+V++ VL  +    VE   ++
Sbjct: 383 KINNLSNFQKDILNHALITIKTAKTFVYSTCSFFEEENEQVIKSVLEKNMGFYVENAGID 442

Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
              +K+         +  +R  P+  +          G F   L R+
Sbjct: 443 KFLFKN---GKYEFSDKCVRTFPNRDKCR--------GIFICKLCRK 478


>gi|227515668|ref|ZP_03945717.1| transcription antitermination protein NusB [Lactobacillus fermentum
           ATCC 14931]
 gi|260663543|ref|ZP_05864433.1| transcription antitermination factor NusB [Lactobacillus fermentum
           28-3-CHN]
 gi|227085971|gb|EEI21283.1| transcription antitermination protein NusB [Lactobacillus fermentum
           ATCC 14931]
 gi|260552084|gb|EEX25137.1| transcription antitermination factor NusB [Lactobacillus fermentum
           28-3-CHN]
          Length = 139

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--ILVRAIVNVTL 57
           M       R V+   L  +     +    +D E        L+ +++    +  +V    
Sbjct: 1   MTFKRRKIREVAFQTLFAM-----ASDPEVDREQLYKELLPLAPQEEVPAYLEELVTGVS 55

Query: 58  RFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                 D  ++  L    SL R +     +LR+++ ++ Y  DV     +D A+E  K+ 
Sbjct: 56  EHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEALEMTKKF 115

Query: 115 KENRHFA 121
            +++   
Sbjct: 116 SDDKSRK 122


>gi|312877547|ref|ZP_07737507.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795688|gb|EFR12057.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
          Length = 134

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 12  SHLLSCV--MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +L        +  +          +        D+  +  ++   ++   RID +++ 
Sbjct: 1   MKILYAYRFEDGQQDIMEFYKKFRELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEK 60

Query: 70  VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                 L R      +LLR++V ++L+  DV     +D AV+ A            VN I
Sbjct: 61  YSKDWPLSRLPMVELELLRIAVYELLFEEDVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119

Query: 128 LRR 130
           L R
Sbjct: 120 LGR 122


>gi|38233925|ref|NP_939692.1| transcription antitermination protein NusB [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564845|sp|Q6NH08|NUSB_CORDI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|38200186|emb|CAE49867.1| Putative transcription termination related protein [Corynebacterium
           diphtheriae]
          Length = 182

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           S   AR  +  +L     + I    +++     S              + IV+     L 
Sbjct: 15  SRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAMELD 74

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
           R+D ++   L    SL R     + +LRVSV ++++  DV     +   VE A     + 
Sbjct: 75  RLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYSTDV 134

Query: 119 HFA 121
             A
Sbjct: 135 SPA 137


>gi|114327667|ref|YP_744824.1| n utilization substance protein B [Granulibacter bethesdensis
           CGDNIH1]
 gi|119390773|sp|Q0BTF1|NUSB_GRABC RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114315841|gb|ABI61901.1| n utilization substance protein B [Granulibacter bethesdensis
           CGDNIH1]
          Length = 163

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 13/130 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR----------LLSQRDQILVRA 51
           +    +R+ +   L    + + SL  +++                    +   +  L   
Sbjct: 6   RPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPLFSR 65

Query: 52  IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV-DLAV 108
           IV    +    ID +L   L     L R    L+ LLR    ++   D     VV +  +
Sbjct: 66  IVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVINEYL 125

Query: 109 EQAKRDKENR 118
           + A    +  
Sbjct: 126 DIAHGFFQGE 135


>gi|189347470|ref|YP_001943999.1| NusB antitermination factor [Chlorobium limicola DSM 245]
 gi|238692182|sp|B3EFQ8|NUSB_CHLL2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189341617|gb|ACD91020.1| NusB antitermination factor [Chlorobium limicola DSM 245]
          Length = 164

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 5/136 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +  +   +                          ++      
Sbjct: 1   MKTYRRQIREKILQALYTIELRDTDIDSAAGWLLTQEILD--DPNAMKFFNMLIGSIKAH 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
           +  ID  ++       + R     + +LR+++A+ILY  D+     ++ A+E AK+    
Sbjct: 59  MSEIDCYIERHTFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFSST 118

Query: 118 RHFAKLVNSILRRVSR 133
              +K VN IL  +  
Sbjct: 119 EKSSKFVNGILDAIFN 134


>gi|326692420|ref|ZP_08229425.1| N utilization substance protein B [Leuconostoc argentinum KCTC
           3773]
          Length = 138

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 11/123 (8%)

Query: 3   SGMNARLVSSHLLSCVMRK--RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           S   +R  +  +L  + +     S+  L ++      +     R       +VN  L   
Sbjct: 5   SRHESRQAAFQVLFALEKDPTSNSIDSLYEIVLDGKDYDDYLPR-------LVNGVLGSK 57

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +DA +   L +   + R   +   +LR+++ ++    V     +D A+  AK   +  
Sbjct: 58  ADLDAHITAHLATGWAINRINKADLVILRLAIYELNNQLVPYKVAIDEALILAKTFADED 117

Query: 119 HFA 121
              
Sbjct: 118 DRK 120


>gi|158320645|ref|YP_001513152.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
 gi|166918801|sp|A8MFJ3|NUSB_ALKOO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|158140844|gb|ABW19156.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
          Length = 138

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR ++  +L  +          ++    +     + ++ +  +  ++N  +  L
Sbjct: 1   MSRKL-ARELTMKVLFEMHINNDFNIQRVEHHLFEG---SIEEQQKEYIHKVLNEAILNL 56

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID++++       L R       +LR++ ++I+Y+ D+     ++ A+E AK    + 
Sbjct: 57  EAIDSIIEEYSTSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAK-IYGSD 115

Query: 119 HFAKLVNSILRRVSRE 134
                VN IL +   +
Sbjct: 116 ETPNFVNGILGKYVEQ 131


>gi|23014664|ref|ZP_00054469.1| COG0781: Transcription termination factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 156

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR---LLSQRDQILVRAIVNVTLR 58
                ARL +  +L  +          L       A      ++  D  L+  +V     
Sbjct: 9   AKRSAARLAAVQVLYQMEMTGTDCERALQDAKDRRAAEPKGRMADPDSSLLNQVVRGVSA 68

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDK 115
            L  ID  +   L    ++ R +  L+ ++R    ++           +   V+ A    
Sbjct: 69  QLEDIDRHVGGALSGDWTVERLEAVLRAIIRGGAWELSARPQTPARVCISEWVDVAHAFY 128

Query: 116 ENRHFAKLVNSILRR 130
                  LVN++L  
Sbjct: 129 SGPE-PGLVNAVLDH 142


>gi|148544409|ref|YP_001271779.1| transcription antitermination protein NusB [Lactobacillus reuteri
           DSM 20016]
 gi|184153772|ref|YP_001842113.1| transcription antitermination protein NusB [Lactobacillus reuteri
           JCM 1112]
 gi|166918809|sp|A5VKR8|NUSB_LACRD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|229620058|sp|B2G851|NUSB_LACRJ RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|148531443|gb|ABQ83442.1| NusB antitermination factor [Lactobacillus reuteri DSM 20016]
 gi|183225116|dbj|BAG25633.1| transcription termination factor [Lactobacillus reuteri JCM 1112]
          Length = 138

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +    R  +  +L  +     +    +         + +       +  +VN     
Sbjct: 1   MSLNRHMIREEAFQVLFALQSDSEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 56

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
             ++D  ++ +L S   + R       +LR+++ +I Y  +V     ++ A+E  K    
Sbjct: 57  QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 116

Query: 117 NRHFA 121
           ++   
Sbjct: 117 DKSRK 121


>gi|77407589|ref|ZP_00784390.1| sun protein [Streptococcus agalactiae H36B]
 gi|77173802|gb|EAO76870.1| sun protein [Streptococcus agalactiae H36B]
          Length = 110

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 7  ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
          AR ++   L  V  K       L+     S    LS +D+ LV  IV  T+     ++  
Sbjct: 9  ARGLALMTLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWY 65

Query: 67 LDFVLISSLPRKKYSL 82
          L   +     + +  +
Sbjct: 66 LSHFI-VDRDKLELWV 80


>gi|291531066|emb|CBK96651.1| transcription antitermination factor NusB [Eubacterium siraeum
           70/3]
          Length = 143

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R  +  +L  +     +L  +L+           SQ  +     +V         
Sbjct: 7   TRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQSVK-----LVKGVAEHEDE 61

Query: 63  IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           ++ +++       L R  Y    ++R+++ ++ Y   V D   ++ A+E AK    ++  
Sbjct: 62  LNGIIESYSPSRKLDRISYINLAIMRIALYEMKYCPSVPDKVAINEAIEFAKEY-ADKTD 120

Query: 121 AKLVNSILRRVSREKIELLQRIA 143
            + +N +L    ++     Q  A
Sbjct: 121 VRFINGVLNSYYKDNPTKEQPDA 143


>gi|269216070|ref|ZP_06159924.1| transcription antitermination factor NusB [Slackia exigua ATCC
           700122]
 gi|269130329|gb|EEZ61407.1| transcription antitermination factor NusB [Slackia exigua ATCC
           700122]
          Length = 218

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  ++ +L         +  +L+          L++      R ++         ID ++
Sbjct: 13  RRSAASVLYQSEIIGKPVDRILEE-GDIPEEAGLNE----YGRLLLLGFSAHRAEIDRII 67

Query: 68  DFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
                +  + R     ++LLR++V ++ Y+D V     ++ AVE AK    +  +
Sbjct: 68  SERSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEFGGDDSY 122


>gi|259046624|ref|ZP_05737025.1| N utilization substance protein B [Granulicatella adiacens ATCC
           49175]
 gi|259036789|gb|EEW38044.1| N utilization substance protein B [Granulicatella adiacens ATCC
           49175]
          Length = 153

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-----SLTCLLD-LEYGDSAFRLLSQRD-------QILV 49
                R+++   L  +          +L+  L+  E    +   +++ D           
Sbjct: 7   KRRALRVLAIQALYQLDMTPEMHIVDALSLALECSEDSPYSSDAITEEDLINEVPEIAYS 66

Query: 50  RAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL--YLDVADYAVVDL 106
            A+V      L +ID +++       L R       ++RV++ ++    L+V     ++ 
Sbjct: 67  IALVRGVQNNLEKIDGLIEKHSKRWKLNRIVRLDLIIMRVAIFEMTSPELEVPQTVALNE 126

Query: 107 AVEQAKRDKENRHFAKLVNSILRRV 131
           A+E AK    +   AK +N IL   
Sbjct: 127 AIEIAKTY-SDEKSAKFINGILSNF 150


>gi|282899369|ref|ZP_06307337.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
 gi|281195736|gb|EFA70665.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
          Length = 213

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67
           +  +L   +    +    L L         L+ +D   +   + IV       P +D ++
Sbjct: 83  ARTMLQEAIGCTQTAINQLGLAVDFPELIQLANQDKEVRNYAKEIVVTVDENRPILDQII 142

Query: 68  DFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              L    + R     + +L+++VA++ +++V     ++ AVE AKR   +    + +N 
Sbjct: 143 SQALVDWQVTRLAQIDRDILQIAVAEMKFMEVPPSIAINEAVELAKRYSGDDG-HRFING 201

Query: 127 ILRRVSREKIE 137
           +LRRV  +K  
Sbjct: 202 VLRRVIDQKQP 212


>gi|255327156|ref|ZP_05368231.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC
           25296]
 gi|283458028|ref|YP_003362637.1| transcription termination factor [Rothia mucilaginosa DY-18]
 gi|255295774|gb|EET75116.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC
           25296]
 gi|283134052|dbj|BAI64817.1| transcription termination factor [Rothia mucilaginosa DY-18]
          Length = 136

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S   ARL +  +L    ++      +L           +S         I+       
Sbjct: 1   MNSRTKARLRALEVLFEADQRNEDYIEVLRRR-RLYTVAQIS----AYSEEIIRGVRDHD 55

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             I   ++      S  R     + +LR+   ++LY D V D   +  AV  A+    N 
Sbjct: 56  EEIREFVETYARDWSFERMPAVDRAVLRIGTWELLYNDEVPDAVAISEAVGLARVLSTNE 115

Query: 119 HFAKLVNSILRR 130
              K VN +L +
Sbjct: 116 S-PKFVNGLLDK 126


>gi|290579819|ref|YP_003484211.1| putative transcription termination factor [Streptococcus mutans
           NN2025]
 gi|254996718|dbj|BAH87319.1| putative transcription termination factor [Streptococcus mutans
           NN2025]
          Length = 147

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 6/123 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLP 61
           S  + R  +   L  +     +LT                + +    +  ++        
Sbjct: 13  SRRDLRERAFQALFSLEFGGDNLTAA--RFAYTYDKNEEEEAELPLFLLTLIQGVYDCRR 70

Query: 62  RIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            ID  +   L S   L R     + LLR+ + +I Y  +  +   ++  +E AK+  + +
Sbjct: 71  EIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEK 130

Query: 119 HFA 121
              
Sbjct: 131 SSK 133


>gi|312149672|gb|ADQ29743.1| transcription antitermination factor NusB [Borrelia burgdorferi
           N40]
          Length = 142

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              R+++   +  +   + ++  + D+    D    + ++  +    ++V  T   L  I
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNNLEHI 61

Query: 64  DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120
           D+++  + L  SL R       +LR+ V  + + +  +    ++D A+  AK+   +++ 
Sbjct: 62  DSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-GSKNS 120

Query: 121 AKLVNSILRRVSREK 135
            K +N IL  + +  
Sbjct: 121 YKFINGILDALLKNM 135


>gi|309378212|emb|CBX23156.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 141

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    +R ++   +   +  R +   +       S F    + D+ L   +   T   
Sbjct: 1   MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L  +  ++  + +     +++ A+E  K      
Sbjct: 58  AAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFAKLVNSILRR 130
              K VN IL +
Sbjct: 118 G-HKFVNGILDK 128


>gi|83593156|ref|YP_426908.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170]
 gi|119390811|sp|Q2RTC4|NUSB_RHORT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|83576070|gb|ABC22621.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170]
          Length = 185

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 25/149 (16%)

Query: 6   NARLVSSHLLSCV-MRKRISLTCLLDLEYGDS--------------------AFRLLSQR 44
            ARL +   L  + + +   +  ++      S                        L   
Sbjct: 24  AARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMAIVEVADPEGIFDPTEEIAALEPP 83

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADY 101
           D  L   +V      L R+D V+   L       R +  ++ +LR  V ++L        
Sbjct: 84  DGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPPR 143

Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             +   V+ A           +VN++L R
Sbjct: 144 VAIKEYVDIAAAFYSGAE-PGMVNAVLDR 171


>gi|28211246|ref|NP_782190.1| transcription antitermination protein NusB [Clostridium tetani E88]
 gi|32171611|sp|Q894G5|NUSB_CLOTE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28203686|gb|AAO36127.1| N utilization substance protein B [Clostridium tetani E88]
          Length = 153

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 22/155 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRIS-------LTCLLDLEYG-----------DSAFRLLS 42
           MK    +R ++  LL  +M K+ +       L   L  E             D     L 
Sbjct: 1   MK-RKKSREMTMQLLFEMMIKKENYVEIINTLKEALTEEEDINSILGEKKEMDEERIDLD 59

Query: 43  QRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVAD 100
           + D   +   +         +D  ++  L + +L R       +LR+   +IL+  +V D
Sbjct: 60  EVDLEYLIHTLKGVEENSKVLDEHIEKYLKNWTLNRLAKVDLAILRLCSYEILFSNEVPD 119

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
              ++  VE AK+   +      +N++L +++++ 
Sbjct: 120 NVAINEGVELAKKY-GDDKSPAFINAVLDKIAKQM 153


>gi|256053079|ref|XP_002570036.1| williams-beuren syndrome critical region protein [Schistosoma
           mansoni]
 gi|227287392|emb|CAY17655.1| williams-beuren syndrome critical region protein, putative
           [Schistosoma mansoni]
          Length = 611

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 35/233 (15%)

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +          + +     ++  L  +      +QD ++    ++     N  VLD CAA
Sbjct: 207 EFMLDYHLPHLLLVFPSGTALYDLELYKSKSLLIQDKASCFGPEILQPDPNSDVLDACAA 266

Query: 252 PGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF- 307
           PG KT QLI      + +  +D       K      +    + +    D     P     
Sbjct: 267 PGNKTLQLISMLSNKSTIFVVDRDPNSKHKKSIQSSQ---PSIEAYCSDFLSIDPYHRKF 323

Query: 308 ---DAVLVDAPCSSTGTIRRH------PDVLWTRDTDDI-------------VKSACFQR 345
               ++L+D  CS +G   R           +T    D               + +  Q 
Sbjct: 324 SNVQSILLDPSCSGSGLSIRQPDGGDEQFDKFTHKKSDNYIDVYSEEYSSRLKRLSNLQA 383

Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
            LL     F      VV+S CS+  +++E VV+++        E +P+ +   
Sbjct: 384 MLLKHAFKFPNVQ-RVVYSTCSIHPEENESVVREI-----ANYETIPITNEEG 430


>gi|326925328|ref|XP_003208869.1| PREDICTED: putative methyltransferase NSUN4-like [Meleagris
           gallopavo]
          Length = 390

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 27/268 (10%)

Query: 193 LNAVMLPTGGIRLKELPESIVSL-PGFAEGV----WWVQDASASIPVQLFGTLNNLSVLD 247
           L    + +           I    P + + +    +++ DA++ +PV       +  VLD
Sbjct: 129 LLHASVSSNIKCYTFPRGDISRFRPAWPDSLGILSYYLMDAASLLPVLALNVQLDDLVLD 188

Query: 248 LCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLDRLHLY------AEDIIEMDAF 299
           LCAAPGGKT  L+ +GA     A DVS  R ++L   L+           +    +   +
Sbjct: 189 LCAAPGGKTLALLQTGACGHLAANDVSFSRTKRLYHILNSYIPKEIRETVSITSHDGRNW 248

Query: 300 DYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  F  VLVD PC++     +    ++     T +       Q +LL+ GI   KP
Sbjct: 249 GELQGGTFHKVLVDVPCTTDRHSVMEEENNIFHKMRTKERQMLPMLQLQLLMAGILAAKP 308

Query: 358 GGIVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-- 413
            G VV+S CSL +  +E VV++   +  +   + +   + ++++ +         G    
Sbjct: 309 EGEVVYSTCSLSQLQNEHVVERAIDIAETQFNITVHVEDLSHFRMLFQDTFCFFSGCRLG 368

Query: 414 -RITPDMLEKIDGVSSGMDGFFAVALRR 440
             + P +      +       +   LRR
Sbjct: 369 ELVLPHLTANFGPL-------YFCKLRR 389


>gi|227363166|ref|ZP_03847300.1| transcription antitermination protein NusB [Lactobacillus reuteri
           MM2-3]
 gi|227071772|gb|EEI10061.1| transcription antitermination protein NusB [Lactobacillus reuteri
           MM2-3]
          Length = 141

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +    R  +  +L  +     +    +         + +       +  +VN     
Sbjct: 4   MSLNRHMIREEAFQVLFALQSDSEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 59

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
             ++D  ++ +L S   + R       +LR+++ +I Y  +V     ++ A+E  K    
Sbjct: 60  QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 119

Query: 117 NRHFA 121
           ++   
Sbjct: 120 DKSRK 124


>gi|15676581|ref|NP_273725.1| transcription antitermination protein NusB [Neisseria meningitidis
           MC58]
 gi|261377912|ref|ZP_05982485.1| transcription antitermination factor NusB [Neisseria cinerea ATCC
           14685]
 gi|261401063|ref|ZP_05987188.1| transcription antitermination factor NusB [Neisseria lactamica ATCC
           23970]
 gi|304388064|ref|ZP_07370193.1| transcription antitermination factor NusB [Neisseria meningitidis
           ATCC 13091]
 gi|22095969|sp|Q9K0D0|NUSB_NEIMB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|7225910|gb|AAF41101.1| N utilization substance protein B [Neisseria meningitidis MC58]
 gi|254673604|emb|CBA09124.1| N utilization substance protein B [Neisseria meningitidis alpha275]
 gi|269145771|gb|EEZ72189.1| transcription antitermination factor NusB [Neisseria cinerea ATCC
           14685]
 gi|269208952|gb|EEZ75407.1| transcription antitermination factor NusB [Neisseria lactamica ATCC
           23970]
 gi|304337921|gb|EFM04061.1| transcription antitermination factor NusB [Neisseria meningitidis
           ATCC 13091]
 gi|316983655|gb|EFV62636.1| transcription antitermination factor NusB [Neisseria meningitidis
           H44/76]
 gi|325129787|gb|EGC52595.1| transcription antitermination factor NusB [Neisseria meningitidis
           OX99.30304]
 gi|325133802|gb|EGC56458.1| transcription antitermination factor NusB [Neisseria meningitidis
           M13399]
 gi|325139868|gb|EGC62399.1| transcription antitermination factor NusB [Neisseria meningitidis
           CU385]
 gi|325143929|gb|EGC66239.1| transcription antitermination factor NusB [Neisseria meningitidis
           M01-240013]
 gi|325200631|gb|ADY96086.1| transcription antitermination factor NusB [Neisseria meningitidis
           H44/76]
 gi|325203770|gb|ADY99223.1| transcription antitermination factor NusB [Neisseria meningitidis
           M01-240355]
 gi|325206473|gb|ADZ01926.1| transcription antitermination factor NusB [Neisseria meningitidis
           M04-240196]
          Length = 141

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    +R ++   +   +  R +   +       S F    + D+ L   +   T   
Sbjct: 1   MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L  +  ++  + +     +++ A+E  K      
Sbjct: 58  AAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFAKLVNSILRR 130
              K VN IL +
Sbjct: 118 G-HKFVNGILDK 128


>gi|317405459|gb|EFV85770.1| N utilization substance protein B [Achromobacter xylosoxidans C54]
          Length = 163

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 3/131 (2%)

Query: 12  SHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              +   + R         +++         S+ D    + +++  LR  P +       
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAHLRDTEEFSEADAQWFKTLLHGVLREAPALRERFTPY 91

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +   L         +L +   ++++  +V     ++ AVE AK       F   VN +L 
Sbjct: 92  VDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGFK-FVNGVLD 150

Query: 130 RVSREKIELLQ 140
           +++ +      
Sbjct: 151 KLAADVRSHEM 161


>gi|257453620|ref|ZP_05618910.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60]
 gi|257449078|gb|EEV24031.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60]
          Length = 186

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 4/118 (3%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR      L   +        +      ++A   +          +++  +     + A
Sbjct: 30  KARRFVVQGLYEWLLTGNPSHEIEAHTRSENAMHTVH---LGYYHELLSKIIEQSDDLIA 86

Query: 66  VLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAK 122
            +D +L     R     Q +L V   ++  +L+V    V+D A++       +  +  
Sbjct: 87  YIDSLLNRPWTRLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFGSSDGYKM 144


>gi|218296634|ref|ZP_03497352.1| NusB antitermination factor [Thermus aquaticus Y51MC23]
 gi|218242947|gb|EED09480.1| NusB antitermination factor [Thermus aquaticus Y51MC23]
          Length = 151

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD------SAFRLLSQRDQILVRAIVN 54
           M+    AR ++   L    +  + L   L     +           L +   +  R ++ 
Sbjct: 1   MRRR--ARELAMRALFAHTQGGVDLEEALRHALEEMGGEEEPYGDPLDEEGVVFARRLLL 58

Query: 55  VTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
                   +D +L   +      +   +   +LR++  ++LY       ++++AV+ A R
Sbjct: 59  GYKAHQEEVDRILKETVEGWDFGQMAKTDLTILRLATYEMLYEPTPFAPLIEVAVKIANR 118

Query: 114 DKENRHFAKLVNSILRRVSREKI 136
                H    VN +L R+ R   
Sbjct: 119 Y-GGEHSGAFVNGVLGRLYRRIQ 140


>gi|328869977|gb|EGG18352.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
          Length = 707

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 17/115 (14%)

Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIP 387
           + + +   A FQ  ++     F  VK    V +S CS+ + ++E+VV + L+   +    
Sbjct: 431 NQNRLQTLADFQLSIIKHAFGFPNVKK---VAYSTCSIHQTENEDVVFRALKYLNAKKPT 487

Query: 388 VELVPLNSAYWKSIDM-AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
            +LV +   + KS     M  + +  IR  P++            GFF     ++
Sbjct: 488 WKLVKILPNWNKSRGFAGMYPTSDYSIRTAPEV--------DNTIGFFVALFEKI 534



 Score = 50.3 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 101/290 (34%), Gaps = 16/290 (5%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
             A+V  TL++   ID ++  +   ++ ++K     ++ V +  +L+    D      A 
Sbjct: 41  AYALVCETLKYKDIIDELITTI--PNIKKEKNLKYGIMLVMIYDLLFSTAKDIRGGGFAK 98

Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168
           +     K   + +     I ++VS     L + I    ++P + +        ++     
Sbjct: 99  KIVIGYKTQLNSSLARLKIKKQVSSNTGLLPESIRNPLVLPRYVRINTLAKKTQQTDEQF 158

Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEG 221
               I        +  D  T+  KL+                 +      +        G
Sbjct: 159 IQQIIQKFKDRGFILKDGNTYQSKLDFSNDKFFYQDNDFKEIIIFTSAIDLHDDELLTTG 218

Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278
              +QD ++ +P  +       +V+D C+APG KT   + L+ +  ++ A++  K+R   
Sbjct: 219 QIILQDKASCLPSYILAPPPGATVIDSCSAPGNKTSLLSALMGNTGRIYAIEKDKKRCGT 278

Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRR 324
           L     R        I     +           + +L D  CS +G + R
Sbjct: 279 LIKLTTRSQCKNITAINDSFLECSWDDPKFKDVEYILCDPSCSGSGIVNR 328


>gi|306807668|ref|ZP_07444336.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu007]
 gi|308345910|gb|EFP34761.1| putative transcription antitermination factor NusB [Mycobacterium
           tuberculosis SUMu007]
          Length = 232

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI- 72
           LL     + IS   ++D     +  +    R      A+          ID ++   L  
Sbjct: 3   LLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHLRG 62

Query: 73  SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
            +L R     + +LRVSV ++L+  DV +  VVD AV+ AK           VN +L +V
Sbjct: 63  WTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSPGFVNGVLGQV 121

Query: 132 S 132
            
Sbjct: 122 M 122


>gi|199597165|ref|ZP_03210597.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           HN001]
 gi|258508679|ref|YP_003171430.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           GG]
 gi|258539856|ref|YP_003174355.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           Lc 705]
 gi|199591969|gb|EDZ00044.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           HN001]
 gi|257148606|emb|CAR87579.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
           GG]
 gi|257151532|emb|CAR90504.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
           Lc 705]
 gi|259649985|dbj|BAI42147.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           GG]
          Length = 135

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 30  DLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQ 84
                ++ +  +  +D      + A+V   L     +DA L   L     L R       
Sbjct: 22  PEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDLI 81

Query: 85  LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           +LR+ + +I Y + + + A ++ A+  AKR   +   AK VN IL   
Sbjct: 82  ILRLGLYEIRYEEAMPEAAAINEAINLAKRY-SDEQSAKFVNGILANF 128


>gi|218767806|ref|YP_002342318.1| transcription antitermination protein NusB [Neisseria meningitidis
           Z2491]
 gi|296315043|ref|ZP_06864984.1| transcription antitermination factor NusB [Neisseria polysaccharea
           ATCC 43768]
 gi|313668841|ref|YP_004049125.1| RNA polymerase antitermination factor [Neisseria lactamica ST-640]
 gi|22095968|sp|Q9JVD5|NUSB_NEIMA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|121051814|emb|CAM08120.1| putative RNA polymerase antitermination factor [Neisseria
           meningitidis Z2491]
 gi|296838251|gb|EFH22189.1| transcription antitermination factor NusB [Neisseria polysaccharea
           ATCC 43768]
 gi|313006303|emb|CBN87766.1| putative RNA polymerase antitermination factor [Neisseria lactamica
           020-06]
 gi|319410056|emb|CBY90390.1| N utilization substance protein B (NusB protein) [Neisseria
           meningitidis WUE 2594]
          Length = 141

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 37/123 (30%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    +R ++   +   +  R +   +         F    + D+ L   +   T   
Sbjct: 1   MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFA---KADEELFNKLFFGTQTN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L  +  ++  + +     +++ A+E  K      
Sbjct: 58  AAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFA 121
              
Sbjct: 118 GHK 120


>gi|313896544|ref|ZP_07830093.1| transcription antitermination factor NusB [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974729|gb|EFR40195.1| transcription antitermination factor NusB [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 121

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKK 79
              SL  +   E    A   L ++D    + +V  T   L  IDA +        L R  
Sbjct: 6   NEASLHDV--SEIAAGAVEGLKEKDLPYAQGLVRGTRAALGEIDAAIARSAKEWKLERMP 63

Query: 80  YSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              + L+R++  ++ Y    +     ++ AVE AK+        + VN IL  + +
Sbjct: 64  GVDRNLIRMAFYEMYYQEERIDPGTAINEAVELAKKY-GAEDAGRYVNGILSAMQK 118


>gi|325682729|ref|ZP_08162245.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A]
 gi|324977079|gb|EGC14030.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A]
          Length = 132

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  +L  +     +    +         + +       +  +VN       ++D  +
Sbjct: 3   REEAFQVLFALQSDSEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREHQDQLDEQI 58

Query: 68  DFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           + +L S   + R       +LR+++ +I Y  +V     ++ A+E  K    ++   
Sbjct: 59  NDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRK 115


>gi|291000438|ref|XP_002682786.1| predicted protein [Naegleria gruberi]
 gi|284096414|gb|EFC50042.1| predicted protein [Naegleria gruberi]
          Length = 815

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 88/305 (28%), Gaps = 110/305 (36%)

Query: 245 VLDLCAAPGGK-------TAQLIVSGAKVTALDVSKRRLEKLRCNLDR---LHLYAEDII 294
            LD+C+APG K                 +   D+ ++RL  L  NL+R          I 
Sbjct: 264 YLDMCSAPGSKSAQMVEYYLNQGDYSKFLICNDIDRKRLGTLFSNLNREPNQFTNNVVIS 323

Query: 295 EMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
             +A     +                +L DA CS  GT+R+  D+      D    +   
Sbjct: 324 HYNAVTLHQQLSSSSLNGQVLSHIHHILCDAVCSGDGTLRKSRDLWERWTYDHGHHNHAT 383

Query: 344 QRKLLLQGI---------------------------------SFVKPGGI--VVFSNCSL 368
           Q  +L+  +                                   +K  G   +V+S CSL
Sbjct: 384 QVSILVSAMQIMLTSFNNENTSLDENTSGETTEEITTENSSLKLIKYDGEYEIVYSTCSL 443

Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSA---------------YWKSID----------- 402
           +  + E VV + +R +    ELV L ++                WK +D           
Sbjct: 444 NPIEDEAVVAEAIRKTNYRFELVDLETSLQNINNNIKYLKGINDWKVVDSLGNVVEKFED 503

Query: 403 ---------------MAMALSPEGWIRITPDML-------------EKIDGVSSGMDGFF 434
                                 EG  +I P M               +I    +   GF+
Sbjct: 504 IQDTSIEFTIKSGDKSENMPKKEGCKKIQPSMFIKDDIKDMNLQYTMRILPHMNNSGGFY 563

Query: 435 AVALR 439
              LR
Sbjct: 564 VAKLR 568


>gi|326919281|ref|XP_003205910.1| PREDICTED: putative methyltransferase NSUN7-like [Meleagris
           gallopavo]
          Length = 686

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 67/464 (14%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67
           ++ +    +  +     +L     DS   +L  +D   Q L   +    L++   ++ +L
Sbjct: 31  AAKI-FQGIHNKKPKDRMLVRYGDDSVSPMLILKDEYSQRLSYELAFSALKYQDLLEEIL 89

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
               +         L  LL V +  +   +             A+  +      +    +
Sbjct: 90  LDSHVYPCHSIPDELTSLLLVMLYDLQDREFEARVTSSEEEPIAEVREIENFLFRFRIKL 149

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
              ++R        ++    +PE  ++           L      +     D+      +
Sbjct: 150 AAALAR-CRIKYDALSIEYFLPETIRK--HEQRASALPLCAWINTLKTSLQDVFRDLKSK 206

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDASASIPVQL 236
            +    +          L +   +++           +L  FA+    +QD S SI V  
Sbjct: 207 GFTEVESMSDFKGYTYCLDQHCHNVLFFPSSLKDELLNLDLFADCKLLLQDKSRSIAVHS 266

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD-------VSKRRLEKLRCNLDRLHLY 289
              L N     + A  G       +S  +  +          +  +  +L      +   
Sbjct: 267 VQALLNTDDDVIVAHLGSHLTVAHMSALRSHSTATVFVCGVKTSAKAAELEDLFSHMGCK 326

Query: 290 AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT---------------- 331
              ++  D  +  PK     +A ++      +G    +P                     
Sbjct: 327 NIQLLYEDFTEIEPKDPRLQNAKVILLTPRCSGLSFSNPIDFILTEHGDAGLLKDLYQGS 386

Query: 332 RDTDDIVKSACFQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390
              D +   A  Q   L+  + F V+    +V+   S+  +++E+VVQK L       +L
Sbjct: 387 VSKDKLCVLAERQLNELMHAMKFQVQS---IVYCTSSVYPEENEQVVQKALEFGVKGKKL 443

Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
            P                     R+ P +L +     S  D FF
Sbjct: 444 KP--------------------FRVIPPVLPECSNPESCTDSFF 467


>gi|319942896|ref|ZP_08017179.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC
           51599]
 gi|319743438|gb|EFV95842.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC
           51599]
          Length = 130

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 5/133 (3%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
              +   +    S   +  ++          + D+     ++  T+     ++A+L   L
Sbjct: 1   MQGIYQWLL---SAEDIGAIQAHIETSPGFDKADRSHFDTLLKGTISQASALEAILLPSL 57

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              L       + +L  +  ++  L ++    V++ AVE AK       +   VN +L R
Sbjct: 58  DRPLNLLSPVERAILMQATFELKDLQEIPYRVVINEAVELAKNFGGTDGYK-YVNGVLDR 116

Query: 131 VSREKIELLQRIA 143
           ++        R A
Sbjct: 117 IAPSVRPHEVRPA 129


>gi|153814701|ref|ZP_01967369.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
 gi|317500231|ref|ZP_07958461.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087539|ref|ZP_08336471.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847732|gb|EDK24650.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
 gi|316898357|gb|EFV20398.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330401757|gb|EGG81335.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 135

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 3/120 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R     +L  +     S+    +L Y         ++D+  ++      L  +  I
Sbjct: 3   RTELREHIFKMLFQIEFND-SVDMPENLNYYFETLEDAKEKDKQYIQNKYEAILSHIEEI 61

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           D +L+         R       +LR+++ +I +  DV     ++ AVE AKR   +   +
Sbjct: 62  DGLLNENATGWKTTRMNKVDLSILRLALYEIKWDEDVPAKVAINEAVELAKRFGGDNSSS 121


>gi|16331086|ref|NP_441814.1| transcription antitermination protein NusB [Synechocystis sp. PCC
           6803]
 gi|1653579|dbj|BAA18492.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
          Length = 275

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R   +ID  L   +    L R     Q +LR+++A++ YL V     +
Sbjct: 174 RKFALELIGTVCRRRQQIDEQLQEAMVDWQLSRLAKIDQDILRLAIAELDYLGVPQKVAI 233

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130
           + AVE AKR    +   + +N +LRR
Sbjct: 234 NEAVELAKRYSG-QDGHRFINGVLRR 258


>gi|332705392|ref|ZP_08425470.1| transcription antitermination factor NusB [Lyngbya majuscula 3L]
 gi|332355752|gb|EGJ35214.1| transcription antitermination factor NusB [Lyngbya majuscula 3L]
          Length = 209

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     I+    R    ID +L+  L    L R     + +LR++VA+I +L + D   +
Sbjct: 113 RSYTLEIIKAVSRRQLEIDQMLNQSLKDWQLKRLPRIDRDILRMAVAEIAFLGIPDRVAI 172

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130
           + AVE AKR  +     + +N +LRR
Sbjct: 173 NEAVELAKRYSDEEG-HRFINGVLRR 197


>gi|302652941|ref|XP_003018309.1| NOL1/NOP2/sun domain protein, putative [Trichophyton verrucosum HKI
           0517]
 gi|291181937|gb|EFE37664.1| NOL1/NOP2/sun domain protein, putative [Trichophyton verrucosum HKI
           0517]
          Length = 528

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 90/305 (29%), Gaps = 76/305 (24%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQL------- 259
            I S   + EG   +QD ++  P  L            ++D CAAPG KT  L       
Sbjct: 198 DITSSSAYKEGRLILQDKASCFPAYLLLGDHPGQWKGDLIDGCAAPGNKTTHLASLLSST 257

Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------V 312
                 +V +LD S  R + L+  + +        +                       +
Sbjct: 258 PEKQKNRVFSLDASHSRSKILQTMVKKAGASNIVTVLPGQDFLALDPADTRFQHVTALLL 317

Query: 313 DAPCSSTGTIRRHPD----------------------VLWTRDTDDI------------- 337
           D  CS +G  +R                             +   +              
Sbjct: 318 DPSCSGSGITKREDVPQLDLPKSKSELTLATTGSSKGSKNRKRKRENPADSSSPGSSPTT 377

Query: 338 ----------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS--- 384
                      K A  Q +++     F      V +S CS+  +++E+VV +VL SS   
Sbjct: 378 EAKEDESERLAKLANLQSQIVEHAFGFPAAT-RVTYSTCSIHHKENEDVVARVLASSIAK 436

Query: 385 --PIPVELVPLNS---AYWKSIDMAMALSPEGWIRITPD----MLEKIDGVSSGMDGFFA 435
                +EL    +     W    +    + E   +++P+     +        G  GFF 
Sbjct: 437 NLGWRLELRSEQARGLRNWHHRGILPGDTSERPPQLSPEQTEACIRCWPAGDEGTGGFFV 496

Query: 436 VALRR 440
               R
Sbjct: 497 AIFVR 501


>gi|172036538|ref|YP_001803039.1| transcription antitermination protein NusB [Cyanothece sp. ATCC
           51142]
 gi|254772628|sp|B1WXY6|NUSB_CYAA5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|171697992|gb|ACB50973.1| transcription termination factor, N utilization substance protein B
           [Cyanothece sp. ATCC 51142]
          Length = 209

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R    ID  L+ VL    L R     Q +LR++VA+IL+LDV +   +
Sbjct: 117 REYAIELIGTINRRRKEIDEQLEAVLKDWQLKRLAKIDQDILRLAVAEILFLDVPEKVSI 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
           + AVE AKR  ++  + + +N +LRR +      
Sbjct: 177 NEAVELAKRYSDDDGY-RFINGVLRRFTDHIKHN 209


>gi|160934296|ref|ZP_02081683.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753]
 gi|156866969|gb|EDO60341.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753]
          Length = 134

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57
           MK    AR  +  L+     +  SL  L++             RD       + + +   
Sbjct: 1   MK-RHEAREQAFFLIFERTFQEASLEELVESAQL--------ARDITICGFAQNVFHGVE 51

Query: 58  RFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
           +    ID +++   +  +  R       +LR +V ++LY + +     ++ AVE AK   
Sbjct: 52  KHGEEIDGMIEKHCIGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIAKTYG 111

Query: 116 ENRHFA 121
                +
Sbjct: 112 STEDAS 117


>gi|254518730|ref|ZP_05130786.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA]
 gi|226912479|gb|EEH97680.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA]
          Length = 134

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           +R ++  LL  +   + +L   ++    D     L   D   ++ I+      +  ID  
Sbjct: 6   SREIAMELLFGMTLSKNTLEETIETFIEDYEMN-LKTIDLEYIKGILAKVEENITVIDQK 64

Query: 67  LDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           ++  L +  + R       +LR+++A++LY  DV +   ++ A+E  K+  + +  +
Sbjct: 65  IEEALTNWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELTKKYSDEKSVS 121


>gi|309807523|ref|ZP_07701479.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169224|gb|EFO71286.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
          Length = 112

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 36/82 (43%)

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
             R+  D +     + ++     Q+ +L   +  +K  G +V+S C+   ++ E++V  +
Sbjct: 1   MFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSWL 60

Query: 381 LRSSPIPVELVPLNSAYWKSID 402
           ++   + ++ +P +        
Sbjct: 61  MKEKKLKIQTIPKSQGISDGHP 82


>gi|329121106|ref|ZP_08249737.1| transcription antitermination factor NusB [Dialister micraerophilus
           DSM 19965]
 gi|327471268|gb|EGF16722.1| transcription antitermination factor NusB [Dialister micraerophilus
           DSM 19965]
          Length = 136

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    +R  +  +L        +       +     ++ LS   +    +++N      
Sbjct: 4   MKRRY-SREYALEVLYANELNPQT------EKINSEIYKKLSDSGKQFAESLINSVRENN 56

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVV--DLAVEQAKRDKE 116
             ID ++   +   S+ +     + +LR+++A++L+L D      V  + A+E AK    
Sbjct: 57  EEIDLLIKKHIKKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIEIAKIYGG 116

Query: 117 NRHFA 121
              F 
Sbjct: 117 KNSFK 121


>gi|313891837|ref|ZP_07825442.1| transcription antitermination factor NusB [Dialister
           microaerophilus UPII 345-E]
 gi|313119831|gb|EFR43018.1| transcription antitermination factor NusB [Dialister
           microaerophilus UPII 345-E]
          Length = 133

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK    +R  +  +L        +       +     ++ LS   +    +++N      
Sbjct: 1   MKRRY-SREYALEVLYANELNPQT------EKINSEIYKKLSDSGKQFAESLINSVRENN 53

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVV--DLAVEQAKRDKE 116
             ID ++   +   S+ +     + +LR+++A++L+L D      V  + A+E AK    
Sbjct: 54  EEIDLLIKKHIKKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIEIAKIYGG 113

Query: 117 NRHFA 121
              F 
Sbjct: 114 KNSFK 118


>gi|254507845|ref|ZP_05119975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           16]
 gi|323491732|ref|ZP_08096910.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
           20546]
 gi|323497970|ref|ZP_08102979.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
           21326]
 gi|219549218|gb|EED26213.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
           16]
 gi|323314094|gb|EGA67180.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
           20546]
 gi|323317015|gb|EGA70017.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
           21326]
          Length = 155

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 13/135 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVRAIVNVTLRFL 60
              +      + ++  + +       +                 D    R ++   +   
Sbjct: 18  LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSTPDTDVAYFRDLLTGVVLSH 77

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119
             +D+ +       +         LLR+++ ++    DV    V++ A+E AK       
Sbjct: 78  TELDSKIRPYTARPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEES 137

Query: 120 FAKLVNSILRRVSRE 134
             K VN +L + +  
Sbjct: 138 -HKFVNGVLDKAAPH 151


>gi|153818540|ref|ZP_01971207.1| Sun/nucleolar protein family protein [Vibrio cholerae NCTC 8457]
 gi|126510943|gb|EAZ73537.1| Sun/nucleolar protein family protein [Vibrio cholerae NCTC 8457]
          Length = 235

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            +V+S C+L ++++++V   + ++    V    L + +  +   ++AL+ EG++ I P M
Sbjct: 1   TLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGFLHIFPQM 57

Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442
            +          GFF   +R+L 
Sbjct: 58  YDCE--------GFFVAKIRKLA 72


>gi|194466519|ref|ZP_03072506.1| NusB antitermination factor [Lactobacillus reuteri 100-23]
 gi|194453555|gb|EDX42452.1| NusB antitermination factor [Lactobacillus reuteri 100-23]
          Length = 138

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +    R  +  +L  +     +    +         + +       +  +VN     
Sbjct: 1   MSLNRHMIREEAFQVLFALQSDPEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 56

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
             ++D  ++ +L S   + R       +LR+++ +I Y  +V     ++ A+E  K    
Sbjct: 57  QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 116

Query: 117 NRHFA 121
           ++   
Sbjct: 117 DKSRK 121


>gi|78187533|ref|YP_375576.1| NusB antitermination factor [Chlorobium luteolum DSM 273]
 gi|119390794|sp|Q3B298|NUSB_PELLD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|78167435|gb|ABB24533.1| NusB antitermination factor [Chlorobium luteolum DSM 273]
          Length = 163

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+     R      L  +  +   +                          ++      
Sbjct: 1   MKTYRRQIREKILQALYTLELRETDIESAAGWLLTPEILE--DPNAMKFFNLLLKSIKDN 58

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
              ID  +        + R     + +LR+++A++LY  D+     ++ A+E AK+    
Sbjct: 59  REEIDRYIAAHTFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFNST 118

Query: 118 RHFAKLVNSILRRVSR 133
              +K VN IL  +  
Sbjct: 119 DKSSKFVNGILDAIFN 134


>gi|261392944|emb|CAX50529.1| N utilization substance protein B (NusB protein) [Neisseria
           meningitidis 8013]
 gi|325127809|gb|EGC50717.1| transcription antitermination factor NusB [Neisseria meningitidis
           N1568]
          Length = 141

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    +R ++   +   +  R +   +       S F    + D+ L   +   T   
Sbjct: 1   MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L  +  ++  + +     +++ A+E  K      
Sbjct: 58  AAEYIQQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFAKLVNSILRR 130
              K VN IL +
Sbjct: 118 G-HKFVNGILDK 128


>gi|111114929|ref|YP_709547.1| transcription antitermination protein NusB [Borrelia afzelii PKo]
 gi|119372279|sp|Q0SP57|NUSB_BORAP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110890203|gb|ABH01371.1| N-utilization substance protein B [Borrelia afzelii PKo]
          Length = 137

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRI 63
              R+++   +  +   + ++  + D+   +     +  +  +    ++VN T   L  I
Sbjct: 2   HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVNGTFNNLEHI 61

Query: 64  DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120
           D+++  +    SL R       +LR+ V  + + +  +    V+D A+  AK+   +++ 
Sbjct: 62  DSLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKY-GSKNS 120

Query: 121 AKLVNSILRRVSREK 135
            K +N IL  + +  
Sbjct: 121 CKFINGILDALLKNM 135


>gi|227488822|ref|ZP_03919138.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091244|gb|EEI26556.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 342

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   AR  ++ +L     + I  +      E        ++   +   R I+      L 
Sbjct: 12  ARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGPEPVTAPVRPYTREIIEGVAVNLD 71

Query: 62  RIDAVLDFVL---ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKE 116
            ID  ++  L     +  R     + +LRV+  ++L+   +V     V  AVE       
Sbjct: 72  LIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVELV-SQLS 130

Query: 117 NRHFAKLVNSILRRV 131
                  VN++L  +
Sbjct: 131 TDDSPAYVNAVLDAM 145


>gi|227544393|ref|ZP_03974442.1| transcription antitermination protein NusB [Lactobacillus reuteri
           CF48-3A]
 gi|227185656|gb|EEI65727.1| transcription antitermination protein NusB [Lactobacillus reuteri
           CF48-3A]
          Length = 138

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +    R  +  +L  +     +    +         + +       +  +VN     
Sbjct: 1   MSLNRHMIREEAFQVLFALQSDPEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 56

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
             ++D  ++ +L S   + R       +LR+++ +I Y  +V     ++ A+E  K    
Sbjct: 57  QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 116

Query: 117 NRHFA 121
           ++   
Sbjct: 117 DKSRK 121


>gi|225166064|ref|ZP_03727805.1| NusB antitermination factor [Opitutaceae bacterium TAV2]
 gi|224799698|gb|EEG18186.1| NusB antitermination factor [Opitutaceae bacterium TAV2]
          Length = 154

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLPR 62
             ++R+ +   L             L  +           R+       +V+  +R L  
Sbjct: 9   RRDSRVAAMQYLFAWSMN---APQNLSEDLRAFYETQEHPREHYAYADEVVDGVIRNLVE 65

Query: 63  IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120
           IDA +  +  +    R       +LRV++ ++++  DV     ++ A+  +K    N   
Sbjct: 66  IDARIRTLAQNWEFDRIARIDLTILRVAIYEMIFRKDVPPVVSINEAINLSKTY-SNSDA 124

Query: 121 AKLVNSILRR 130
            + +N IL R
Sbjct: 125 KRFINGILDR 134


>gi|70952464|ref|XP_745398.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525709|emb|CAH78902.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 487

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 76/199 (38%), Gaps = 13/199 (6%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL---------HLYAEDIIEM 296
           +++           +     +   + +K R ++L+  L +          +L+  +   +
Sbjct: 237 IEINCCLNVLNYYKVNREGCLVVNEFNKARYDRLKQVLHKHLPNDLIKSGNLHITNYNGL 296

Query: 297 DAFDYCPKKLFDAVLVDAPCS-STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
               +   + F  +L+D PCS     I++  + +     + I  ++  Q  LL+     +
Sbjct: 297 QLNSFIRFQKFHKILLDVPCSTDEHLIKKGTNDINKWTFNSIKNNSNIQYDLLVNSFHLL 356

Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL---SPEGW 412
              G++++S C+L   +++  +++ ++     V+++      ++ +     +   + E  
Sbjct: 357 HKNGVIIYSTCALSHHENDYNIERFIKKFKKEVKILDFLEDEYERVYKEKIMNNHTIENG 416

Query: 413 IRITPDMLEKIDGVSSGMD 431
             I      +    S+  D
Sbjct: 417 SHIPCHCKMEAPDKSTNHD 435


>gi|257865766|ref|ZP_05645419.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
 gi|257872101|ref|ZP_05651754.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
 gi|257799700|gb|EEV28752.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
 gi|257806265|gb|EEV35087.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
          Length = 154

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILV----RAI 52
           M         R ++   L  +   +  +    +          L+ +  +  V      +
Sbjct: 1   MSKELSRHEIRKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYLDQL 60

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109
           V     +   +D V+   L     + R       +LR+++ +++Y+D V +   ++ A+E
Sbjct: 61  VAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIE 120

Query: 110 QAKRDKENRHFA 121
            AK   +++   
Sbjct: 121 LAKTFSDDQSRK 132


>gi|71892016|ref|YP_277746.1| transcription antitermination protein NusB [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|119372278|sp|Q493G9|NUSB_BLOPB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71796122|gb|AAZ40873.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 144

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 7/145 (4%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  S   AR  +   L      +  +  +      +   +  +         +    + 
Sbjct: 1   MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCN---ISYFHELYIGVIS 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
               +D ++   L  +L +  Y    +LR+++ ++    D+     ++ A+E  K     
Sbjct: 58  CAEELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELVK-IFGA 116

Query: 118 RHFAKLVNSILRRVSREKIELLQRI 142
               K +N +L +++ +        
Sbjct: 117 EKSHKFINGVLDKIANQLCVSTNNH 141


>gi|307299170|ref|ZP_07578971.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914966|gb|EFN45352.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 148

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 1   MKSGMNA-----RLVSSHLLSCVMRKR--ISLTCLLDLEYGDSAFR-LLSQRDQILVRAI 52
           MK+G N      R +    +          S +  L+ E    +    +  R +     I
Sbjct: 1   MKAGPNNSRRKMREIVFSAIYQFDFNEDMESSSDYLEQELSFFSMEMEMKLRTRKYFDTI 60

Query: 53  VNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQ 110
               L+    ID ++   L + +  R   + + +LR+   +I+Y  D+     ++ +++ 
Sbjct: 61  ----LKNRNEIDEIIRKHLTNWTFERLASTDKNVLRLGAYEIIYEPDIPIEVTLNESIDI 116

Query: 111 AKRDKENRHFAKLVNSILRRVSREK 135
           AK+    +   K VN +L +++RE 
Sbjct: 117 AKKYGSEQG-GKFVNGVLDKIAREC 140


>gi|325680657|ref|ZP_08160195.1| transcription antitermination factor NusB [Ruminococcus albus 8]
 gi|324107437|gb|EGC01715.1| transcription antitermination factor NusB [Ruminococcus albus 8]
          Length = 137

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S  + R  +  L    +     L  L +       F LL+      V+ +V       
Sbjct: 1   MASRHDIRQAAFLLSFEKLFLDEELESLFEGAEELGEFLLLNDD----VKDLVRCVFDKQ 56

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             +D+++        L R       +LR+++ + LY D V     +  AV   ++     
Sbjct: 57  EELDSIISKYSDKRALNRIPKVDLAVLRIAIYEALYDDKVPVNVAISEAVSLTEKYALEP 116

Query: 119 HFA 121
             +
Sbjct: 117 DVS 119


>gi|316969845|gb|EFV53885.1| NOL1/NOP2/sun family protein [Trichinella spiralis]
          Length = 456

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 18/239 (7%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267
            +        G   ++D S+ +PV         +VLD+CAAPG KT+ +   + +  K+ 
Sbjct: 209 DLHDDNLLQTGQLILEDKSSCLPVICLDLEPGTTVLDICAAPGNKTSHMASLMNNKGKII 268

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIR 323
           ++D  K R+  LR  L+   +   ++IE D   +            VL+D PCS +G + 
Sbjct: 269 SVDHHKDRVMTLRMRLESFKVTCCEVIEQDFLKFSDYDPIFENVTHVLLDPPCSGSGVVN 328

Query: 324 RHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
           R         D + + + +  Q  +L + +S        V+S CS+ ++++E VV+++L+
Sbjct: 329 RVDFGDDEAMDENRLKRLSNLQAMMLKKALSQSSVM-RCVYSTCSIHEEENEAVVEEILK 387

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +      L       W    +         +R +P             +GFF    +R 
Sbjct: 388 TFGDQFALEEALPG-WTHRGLDTYEFGSLCVRCSP--------EEDMTNGFFVAVFQRK 437


>gi|325090728|gb|EGC44038.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces capsulatus
           H88]
          Length = 556

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 32/166 (19%)

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
              +          +    +               D   + K +  Q +++     F  P
Sbjct: 355 QDPHDRGMKRKRPALTPVPTLGRPAASEHQNTTNIDPGRLTKLSNLQTRIVEHAFRF--P 412

Query: 358 GGIVV-FSNCSLDKQDSEEVVQKVLR-------------SSPIPVELVPLNSAYWKSIDM 403
               V +S CS+  Q++E V+ +VL+                    L           + 
Sbjct: 413 NATRVTYSTCSIHVQENEVVIARVLKSPVAQRRGWRIISRHEQVEGLRKWKYRGITPGES 472

Query: 404 AMALSP---------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          EG +R  P+  E          GFF     R
Sbjct: 473 GDGGGEIWDLTETEREGCLRCWPNDKEC-------TGGFFVAGFVR 511


>gi|261253734|ref|ZP_05946307.1| transcription termination protein NusB [Vibrio orientalis CIP
           102891]
 gi|260937125|gb|EEX93114.1| transcription termination protein NusB [Vibrio orientalis CIP
           102891]
          Length = 155

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 13/135 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVRAIVNVTLRFL 60
              +      + ++  + +       +                 D    R ++   +   
Sbjct: 18  LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSAPDTDVAYFRDLLTGVVLSH 77

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119
             +D+ +       +         LLR+++ ++    DV    V++ A+E AK       
Sbjct: 78  TELDSKIRPYTARPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEES 137

Query: 120 FAKLVNSILRRVSRE 134
             K VN +L + +  
Sbjct: 138 -HKFVNGVLDKAAPH 151


>gi|240274384|gb|EER37900.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces capsulatus
           H143]
          Length = 556

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 32/166 (19%)

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
              +          +    +               D   + K +  Q +++     F  P
Sbjct: 355 QDPHDRGMKRKRPALTPVPTLGRPAASEHQNTTNIDPGRLTKLSNLQTRIVEHAFRF--P 412

Query: 358 GGIVV-FSNCSLDKQDSEEVVQKVLR-------------SSPIPVELVPLNSAYWKSIDM 403
               V +S CS+  Q++E V+ +VL+                    L           + 
Sbjct: 413 NATRVTYSTCSIHVQENEVVIARVLKSPVAQRRGWRIISRHEQVEGLRKWKYRGITPGES 472

Query: 404 AMALSP---------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          EG +R  P+  E          GFF     R
Sbjct: 473 GDGGGEIWDLTETEREGCLRCWPNDKEC-------TGGFFVAGFVR 511


>gi|76155377|gb|AAX26657.2| SJCHGC03823 protein [Schistosoma japonicum]
          Length = 259

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + +  Q  LL   ++F      +V+S CS+  +++E VVQ+          L  +   +
Sbjct: 86  KRLSNLQAMLLRHALNFPNVQ-RIVYSTCSIHPEENEAVVQENAIRVSDKFYLETI---W 141

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKID--------GVSSGMDGFFAVALRR 440
             +I +    +     ++                       +GFF     R
Sbjct: 142 PNTIPLNSVDNITATPQVWKHRGLSEYQCESCIRSSQKDLTNGFFVALFVR 192


>gi|257875394|ref|ZP_05655047.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
 gi|257809560|gb|EEV38380.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
          Length = 154

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILV----RAI 52
           M         R ++   L  +   +  +    +          L+ +  +  V      +
Sbjct: 1   MSKELSRHEIRKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYLDQL 60

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109
           V     +   +D V+   L     + R       +LR+++ +++Y+D V +   ++ A+E
Sbjct: 61  VAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIE 120

Query: 110 QAKRDKENRHFA 121
            AK   +++   
Sbjct: 121 LAKTFSDDQSRK 132


>gi|227542181|ref|ZP_03972230.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182010|gb|EEI62982.1| transcription antitermination protein NusB [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 342

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   AR  ++ +L     + I  +      E        ++   +   R I+      L 
Sbjct: 12  ARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGTEPVTAPVRPYTREIIEGVAVNLD 71

Query: 62  RIDAVLDFVL---ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKE 116
            ID  ++  L     +  R     + +LRV+  ++L+   +V     V  AVE       
Sbjct: 72  LIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVELV-SQLS 130

Query: 117 NRHFAKLVNSILRRV 131
                  VN++L  +
Sbjct: 131 TDDSPAYVNAVLDAM 145


>gi|154248795|ref|YP_001409620.1| transcription antitermination protein NusB [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769316|sp|A7HJ80|NUSB_FERNB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|154152731|gb|ABS59963.1| NusB antitermination factor [Fervidobacterium nodosum Rt17-B1]
          Length = 141

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R +   L      +      +            +    +   +  V      L  ID ++
Sbjct: 9   REMVVKLFFQREFRHNEFEEIFSETLNKIRDNTI----KADFKRYVEGVFHNLSTIDNII 64

Query: 68  -DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125
            + ++  S  R  Y  + +LRV   +++Y + +     ++  +E AK+   +    K VN
Sbjct: 65  SNHLINWSFDRLSYLERNVLRVGTYELIYEENIPIEVTINEMIEIAKKY-GSEESGKFVN 123

Query: 126 SILRRVSREK 135
            IL R+++E 
Sbjct: 124 GILDRIAKEH 133


>gi|47215985|emb|CAF96387.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 348

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 26/238 (10%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSK--------R 274
           +++ DA++ +P          +VLDLCAAPGGKT  L+ + +                 R
Sbjct: 119 YYLMDAASVLPCLALNVQAGHNVLDLCAAPGGKTLALLQTASLGFLCVNDSSVSRTSRLR 178

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSST--GTIRRHPDVLW 330
           ++ +       L      +  +D   +    + +FD VLVD PC++     +    ++  
Sbjct: 179 KVLRSYVPKQHLTDEKIRVTTLDGTHWGEIERNVFDRVLVDVPCTTDRHSLLEDDNNIFS 238

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RSSPI 386
              T +       Q +LLL GI    PGG +V+S C+L    +  VV++ L     +  I
Sbjct: 239 KSRTGERRGLPQLQLQLLLAGIEAACPGGEIVYSTCTLSPHQNASVVEQALHWARENHGI 298

Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWI--RITPDMLEKIDGVSSGMDGFFAVALRRLI 442
            +E+V L              +P+  +   + P +      +       +   +RRL 
Sbjct: 299 QLEVVDLR-RLTHLFRNTFHFAPDLHLGEMVVPHLAANFGPI-------YMCKMRRLT 348


>gi|229135004|ref|ZP_04263810.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
 gi|228648506|gb|EEL04535.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
          Length = 120

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              L  +           ++    +             + ++V   +     IDA +   
Sbjct: 1   MQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVDNKEEIDAAIRQN 54

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           L    L R     + +LRV+V ++ Y+ ++     ++ A+E AK    +    + +N +L
Sbjct: 55  LKKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113

Query: 129 RR 130
             
Sbjct: 114 SN 115


>gi|69244729|ref|ZP_00602993.1| Antitermination protein NusB [Enterococcus faecium DO]
 gi|227550442|ref|ZP_03980491.1| transcription antitermination protein NusB [Enterococcus faecium
           TX1330]
 gi|257879351|ref|ZP_05659004.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
 gi|257881783|ref|ZP_05661436.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
 gi|257888470|ref|ZP_05668123.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
 gi|257890177|ref|ZP_05669830.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
 gi|257897155|ref|ZP_05676808.1| antitermination protein NusB [Enterococcus faecium Com12]
 gi|257899153|ref|ZP_05678806.1| antitermination protein NusB [Enterococcus faecium Com15]
 gi|258615757|ref|ZP_05713527.1| transcription antitermination protein NusB [Enterococcus faecium
           DO]
 gi|260558793|ref|ZP_05830982.1| antitermination protein NusB [Enterococcus faecium C68]
 gi|261206503|ref|ZP_05921203.1| antitermination protein NusB [Enterococcus faecium TC 6]
 gi|289565413|ref|ZP_06445862.1| transcription antitermination factor NusB [Enterococcus faecium
           D344SRF]
 gi|293377380|ref|ZP_06623584.1| transcription antitermination factor NusB [Enterococcus faecium
           PC4.1]
 gi|293553169|ref|ZP_06673806.1| transcription antitermination factor NusB [Enterococcus faecium
           E1039]
 gi|293560490|ref|ZP_06676982.1| transcription antitermination factor NusB [Enterococcus faecium
           E1162]
 gi|293568316|ref|ZP_06679640.1| transcription antitermination factor NusB [Enterococcus faecium
           E1071]
 gi|293571749|ref|ZP_06682768.1| transcription antitermination factor NusB [Enterococcus faecium
           E980]
 gi|294614729|ref|ZP_06694631.1| transcription antitermination factor NusB [Enterococcus faecium
           E1636]
 gi|294618975|ref|ZP_06698470.1| transcription antitermination factor NusB [Enterococcus faecium
           E1679]
 gi|294621587|ref|ZP_06700752.1| transcription antitermination factor NusB [Enterococcus faecium
           U0317]
 gi|314937887|ref|ZP_07845203.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a04]
 gi|314941378|ref|ZP_07848271.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133C]
 gi|314950137|ref|ZP_07853423.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0082]
 gi|314951322|ref|ZP_07854376.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133A]
 gi|314992847|ref|ZP_07858248.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133B]
 gi|314998051|ref|ZP_07862939.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a01]
 gi|68196320|gb|EAN10749.1| Antitermination protein NusB [Enterococcus faecium DO]
 gi|227180343|gb|EEI61315.1| transcription antitermination protein NusB [Enterococcus faecium
           TX1330]
 gi|257813579|gb|EEV42337.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
 gi|257817441|gb|EEV44769.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
 gi|257824524|gb|EEV51456.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
 gi|257826537|gb|EEV53163.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
 gi|257833720|gb|EEV60141.1| antitermination protein NusB [Enterococcus faecium Com12]
 gi|257837065|gb|EEV62139.1| antitermination protein NusB [Enterococcus faecium Com15]
 gi|260075252|gb|EEW63565.1| antitermination protein NusB [Enterococcus faecium C68]
 gi|260079213|gb|EEW66904.1| antitermination protein NusB [Enterococcus faecium TC 6]
 gi|289162742|gb|EFD10593.1| transcription antitermination factor NusB [Enterococcus faecium
           D344SRF]
 gi|291589028|gb|EFF20852.1| transcription antitermination factor NusB [Enterococcus faecium
           E1071]
 gi|291592467|gb|EFF24074.1| transcription antitermination factor NusB [Enterococcus faecium
           E1636]
 gi|291594636|gb|EFF26018.1| transcription antitermination factor NusB [Enterococcus faecium
           E1679]
 gi|291598752|gb|EFF29804.1| transcription antitermination factor NusB [Enterococcus faecium
           U0317]
 gi|291602579|gb|EFF32794.1| transcription antitermination factor NusB [Enterococcus faecium
           E1039]
 gi|291605638|gb|EFF35080.1| transcription antitermination factor NusB [Enterococcus faecium
           E1162]
 gi|291608206|gb|EFF37509.1| transcription antitermination factor NusB [Enterococcus faecium
           E980]
 gi|292644072|gb|EFF62178.1| transcription antitermination factor NusB [Enterococcus faecium
           PC4.1]
 gi|313587893|gb|EFR66738.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a01]
 gi|313592651|gb|EFR71496.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133B]
 gi|313596539|gb|EFR75384.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133A]
 gi|313599801|gb|EFR78644.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133C]
 gi|313642745|gb|EFS07325.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0133a04]
 gi|313643578|gb|EFS08158.1| transcription antitermination factor NusB [Enterococcus faecium
           TX0082]
          Length = 149

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 3   SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILV----RAIVNVTL 57
           S    R ++   L  +     ++    +          ++++ +   V      +V    
Sbjct: 6   SRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLDTLVGGVC 65

Query: 58  RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                +D V++  L ++  + R       +LR+++ ++ Y  DV     ++ A+E AK  
Sbjct: 66  AKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTF 125

Query: 115 KENRHFAKLVNSILRR 130
            ++R     VN +L  
Sbjct: 126 SDDRSRK-FVNGVLSN 140


>gi|300909746|ref|ZP_07127207.1| transcription antitermination factor NusB [Lactobacillus reuteri
           SD2112]
 gi|300893611|gb|EFK86970.1| transcription antitermination factor NusB [Lactobacillus reuteri
           SD2112]
          Length = 141

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +    R  +  +L  +     +    +         + +       +  +VN     
Sbjct: 4   MSLNRHMIREEAFQVLFALQSDPEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 59

Query: 60  LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116
             ++D  ++ +L S   + R       +LR+++ +I Y  +V     ++ A+E  K    
Sbjct: 60  QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 119

Query: 117 NRHFA 121
           ++   
Sbjct: 120 DKSRK 124


>gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Segniliparus rotundus DSM 44985]
 gi|296181863|gb|ADG98769.1| NusB antitermination factor [Segniliparus rotundus DSM 44985]
          Length = 157

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 3/122 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +  LL     + +    L      +    L + +       ++      L  
Sbjct: 14  SRRKARRRAVELLFEAEARDLDPAELAAERSAELVKDLSAPQLTPYALLLLEGVRDNLDV 73

Query: 63  IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           +D  +   L     L R     + +LR++V ++L+  +V     VD A+E AK    +  
Sbjct: 74  VDQTIIDHLRGGWTLQRLPAVDRSILRIAVWELLFATEVPTAVAVDEALELAKELSTDDS 133

Query: 120 FA 121
            +
Sbjct: 134 PS 135


>gi|282895593|ref|ZP_06303727.1| NusB antitermination factor [Raphidiopsis brookii D9]
 gi|281199433|gb|EFA74297.1| NusB antitermination factor [Raphidiopsis brookii D9]
          Length = 213

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67
           +  +L   +    +    L L         L+ +D   +   + IV         +D ++
Sbjct: 83  ARTMLQEAIGCTQTAINQLGLAVDFPELIQLANQDKEVRNYAKEIVVTVDENRTILDQII 142

Query: 68  DFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              L    + R     + +L+++VA++ +++V     ++ AVE AKR   +    + +N 
Sbjct: 143 SQALVDWQVTRLAQIDRDILQIAVAEMKFMEVPPSIAINEAVELAKRYSGDDG-HRFING 201

Query: 127 ILRRVSREKIE 137
           +LRRV+ +K  
Sbjct: 202 VLRRVTEQKQP 212


>gi|170077553|ref|YP_001734191.1| transcription antitermination protein NusB [Synechococcus sp. PCC
           7002]
 gi|254772663|sp|B1XIZ3|NUSB_SYNP2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|169885222|gb|ACA98935.1| transcription antitermination factor NusB [Synechococcus sp. PCC
           7002]
          Length = 213

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 16/131 (12%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL-----LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL- 60
           AR +++  L      R ++  L     L      +    +    +     I+  TLR   
Sbjct: 80  ARTMAADAL---ELTRAAINRLGHVVELPEFLQLTRQHEV----RNFALEIL-TTLRRRN 131

Query: 61  PRIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +I  V+D  ++     R     + +LR++VA+IL+L+      ++ AVE AKR   +  
Sbjct: 132 DQIKEVIDGSLVDWQYHRLPRLDRDILRIAVAEILFLETPYKVAINEAVELAKRY-SDED 190

Query: 120 FAKLVNSILRR 130
             + +N +LRR
Sbjct: 191 GHRFINGVLRR 201


>gi|296196674|ref|XP_002806711.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase
           NSUN7-like [Callithrix jacchus]
          Length = 771

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/469 (14%), Positives = 134/469 (28%), Gaps = 57/469 (12%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L    D   + L   +    L++   ++A+L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFRRLSYELAFSALKYQDILEAILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L Q L                V     E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSQFLLWXCYD-FQDRKFQTRVPSDNEESISEVREVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----KFDIE 187
                     ++   I+PE  +++            I+   ISP  +   +       ++
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYHKVK 231

Query: 188 TWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
           +  H  + V                L   ++++  F +     QD S S+ V     L N
Sbjct: 232 SVLHIDDKVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLN 291

Query: 243 LSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           +    L    G       +              G +  A D   + L        ++   
Sbjct: 292 MDDDILMVNTGSWYTVAHMSVLTNNNTSKVFVCGVQSQAKDPDLKTL------FTKMGCK 345

Query: 290 AEDIIEMDAFDYCPK----KLFDAVLVDAPCS--------------STGTIRRHPDVLWT 331
             +I+     +   K    +    +L+   CS                 T          
Sbjct: 346 NIEILHELFINIESKDHRLQKIKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGG 405

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
              D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L    +  ++ 
Sbjct: 406 ISEDKLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVYPEENEAVVKKALEFQDLGNKVQ 464

Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           P   +          L     I+++ D   +++      +G F   L R
Sbjct: 465 PYRLSPPVLP-----LCSLKEIQLSTDKFFRMEPSEI-TNGCFISILTR 507


>gi|261191660|ref|XP_002622238.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239590004|gb|EEQ72647.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
          Length = 555

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 32/179 (17%)

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           R  +    +      +   KK+    L   PC+         +     D D ++K +  Q
Sbjct: 343 RDDIPRLALPSSHNPNPRSKKMKRTALAPVPCTHADPAADEEEPTPAIDHDRLIKLSNLQ 402

Query: 345 RKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLR--------------------- 382
            +++    SF  P    V +S CS+  Q++E VV + L+                     
Sbjct: 403 TRIIEHAFSF--PAARRVTYSTCSIHAQENEVVVSRALKSPVAQRRGWRILSRSEQVEGL 460

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +     + P       S  + +  +  E  +R  P+          G  GFF     R
Sbjct: 461 RNWKYRGIKPEKPGDGASESLDLTGTELEACLRCWPND-------EEGTGGFFVAGFVR 512


>gi|288957855|ref|YP_003448196.1| N utilization substance protein B [Azospirillum sp. B510]
 gi|288910163|dbj|BAI71652.1| N utilization substance protein B [Azospirillum sp. B510]
          Length = 196

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFLPRIDAVLDFV 70
             +   +  +  ++           +        D  L   IV   +     +D VL   
Sbjct: 53  YQIDLAQAPVENVVGEFVAHRLGEEIDGDKFVAGDPQLFADIVRGAIHRRAEVDGVLGAA 112

Query: 71  LIS--SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           L     L R +  L+ +LR    +I ++LD     ++   V+ A+     R  A +   +
Sbjct: 113 LDPRFPLDRLELLLRAILRAGAYEIAVHLDTHPRILISEYVDVARAFFSGREPAMVNGVL 172

Query: 128 LR 129
             
Sbjct: 173 DH 174


>gi|46199062|ref|YP_004729.1| N utilization substance protein B-like protein [Thermus
           thermophilus HB27]
 gi|55981090|ref|YP_144387.1| N-utilization substance protein B [Thermus thermophilus HB8]
 gi|81567694|sp|Q72JL6|NUSB_THET2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81600431|sp|Q5SJ93|NUSB_THET8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|46196686|gb|AAS81102.1| N utilization substance protein B-like protein [Thermus
           thermophilus HB27]
 gi|55772503|dbj|BAD70944.1| N-utilization substance protein B [Thermus thermophilus HB8]
          Length = 151

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 10/141 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAF------RLLSQRDQILVRAIVN 54
           M+    AR ++   L       + L         +           L Q      R +++
Sbjct: 1   MRRR--ARELAMRALFAHTVGGMGLEEAFQHALEEMGGEEEGYAEPLDQEGVAFARRLLS 58

Query: 55  VTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
                   +D VL+  +      +   +   +LR++V ++LY       ++++AV+ A R
Sbjct: 59  GYKAHQEEVDRVLEETVEGWDFRQMAKTDLAVLRLAVYEMLYEPTPFEPLIEVAVKIANR 118

Query: 114 DKENRHFAKLVNSILRRVSRE 134
                H    VN +L RV R 
Sbjct: 119 Y-GGEHSGSFVNGVLARVYRR 138


>gi|170577368|ref|XP_001893977.1| RIKEN cDNA 2810405F18 [Brugia malayi]
 gi|158599664|gb|EDP37186.1| RIKEN cDNA 2810405F18, putative [Brugia malayi]
          Length = 416

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLR 280
           WW+ D  +  PV   G     +VLD+CAAPGGK+  ++ +G     T  D  + RL +L 
Sbjct: 235 WWLLDGGSLAPVLALGLTEESNVLDMCAAPGGKSLLIVQTGLMTNLTCNDNKQSRLGQLH 294

Query: 281 CNLDRLHLYAEDIIEMDA---------FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
             L +      D+                +     +D VLVDAPC+S        D    
Sbjct: 295 RALGQYIPVNSDVANRIILKRKDASVLDYWDECNTYDRVLVDAPCTSDRLSVNRDDGNLY 354

Query: 332 RDTDDIVKS--ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
                  +      Q ++L+  +  V+ GG VV+S C+L    +E VV+
Sbjct: 355 STQLTEQRLNLPEVQTRMLVNALRSVQVGGYVVYSTCALSPVQNEGVVE 403


>gi|189217516|ref|NP_001121225.1| NOP2/Sun domain family, member 7 [Xenopus laevis]
 gi|169642140|gb|AAI60727.1| LOC100158297 protein [Xenopus laevis]
          Length = 688

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/463 (11%), Positives = 127/463 (27%), Gaps = 60/463 (12%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL---DFVLISSL 75
           +     ++     DS   L S +D   Q     +   TL++   ++ +L    F     L
Sbjct: 43  KKPPDRIVVKYGNDSGRPLSSFKDEKSQRWAYELAFNTLKYQDLLETILLDSGFYHSQPL 102

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
           P     +  L+ V +             +    E  +  +E         + L       
Sbjct: 103 PD---EMTSLVMVMLYD-FQDKKFQPRCLSRTEETIEEVQEVEQLLCGSKTRLSAALARS 158

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
                  +   I+PE  +++          L            ++      E +    + 
Sbjct: 159 RIKHAIPSIEFILPESVRKQ--EERSSTVPLYAWVNTTKTSVTEVCDALKSEGFTKADSP 216

Query: 196 VMLPTGGIRLKELPESIVSLPGF------------------AEGVWWVQDASASIPVQLF 237
           V L        +  + ++  P +                   +  + +   S    +   
Sbjct: 217 VDLIGYKYCTDKHCQDVLVFPPYLKDKLNNLELFMHYKLVLQDKAYILSVHSVRAVMNTD 276

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-- 295
             +   +                 +         S+ R   L+  L  +      +++  
Sbjct: 277 DDIIVATPCSGYILAHMSVLTNQNACRIFVCGMESEAREGALQEVLVDMGCKNVKLLKES 336

Query: 296 -MDAFDYCPKKLFDAVLVDAPCS---------------STGTIRRHPDVLWTRDTDDIVK 339
             D     P+      ++  P S                  T         +  TD +  
Sbjct: 337 FTDLDPSDPRLQKAKTILLLPQSSGSGVGDPVQFVLNQHGDTSLLQDFSQGSVRTDKLNA 396

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAY 397
            +  Q   L   ++F K    +V+  CS+  +++E+V+ + L   P    ++   + S  
Sbjct: 397 LSKQQVTELNHAMTFNKVQA-LVYCTCSVYHEENEDVINQALGQKPESNTIQTYRIGSPV 455

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     + + +I++ P             +GFF   L++
Sbjct: 456 IALPSSEFTSASDKFIKVHPSET---------TNGFFLAVLKK 489


>gi|167758087|ref|ZP_02430214.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704]
 gi|167663984|gb|EDS08114.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704]
          Length = 132

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     R     +L  V       +   L+L +G        ++D   +R  V      
Sbjct: 1   MK-RTEQREHIFKMLFGVEFNAGGDMPEQLELYFG--QLEGAGEKDLDYIREKVQKIASK 57

Query: 60  LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
           +  IDA+++         R       +LR++V ++ +  DV     +D AVE AK+    
Sbjct: 58  VEEIDALINEHTTRWKTSRMNKVDLTILRLAVYEMRWDEDVPTGVAIDEAVELAKKYSSE 117

Query: 118 RHFA 121
              +
Sbjct: 118 DGPS 121


>gi|224049974|ref|XP_002188945.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 730

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/412 (13%), Positives = 129/412 (31%), Gaps = 44/412 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67
           ++ +    +R   S   +L     +S   +++ +D   + +   +    L++   ++ +L
Sbjct: 55  AAKI-FQGIRTEKSTGRILVHYGNNSESPMVAFKDEHSRRVSYELAFNALKYQSLLEEIL 113

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
               +         L  LL V +  +         + D     A+  +   +  +    +
Sbjct: 114 LDSKVYPCNSIPDELTSLLVVMLYDLQDRKFQKRKIFDEEELVAEVQEIGHYLYRYKTKL 173

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
              ++R        ++    +PE   ++          +            D+    +++
Sbjct: 174 AAALAR-CRIKYDALSIEYFVPETLSKQ--EQRTSALPVCFWINTFKISLEDVIRDLEMK 230

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDASASIPVQL 236
            +    +          + +    ++           +L  FA+    +QD S S+ V  
Sbjct: 231 GFTKVESVSDFDHYTYAVDQHCHDVLVFPSSLREELLNLDLFADCRLLLQDKSRSLAVHS 290

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVS-------GAKVTALDVSKRRLEKLRCNLDRLHLY 289
              +       + A  G       +S                S  + E+LR +L  +   
Sbjct: 291 AQAMLGEGGDIIMAHIGSHLTIAHMSVLTNDSSSRIFVCGVKSLAKEEELRNSLSHMGCK 350

Query: 290 AEDIIEMDAFDYCPKK----LFDAVLVDAPCSSTG---------TIRRHPDVLWTR---- 332
              ++  D  +             +L+   CS  G         +  R   +L       
Sbjct: 351 NIWLLHEDFTELQSTDSRLEKAKVILLLPECSELGAGNPMELILSEHRDAGLLQDLLQGF 410

Query: 333 -DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
              D +   A  Q   L+  + F K  G +V+  CS+  +++E VV+K L S
Sbjct: 411 VSEDKLSILAERQLNELIHALKFKKVQG-IVYCTCSVYPEENELVVKKALES 461



 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 11/109 (10%)

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D +   A  Q   L+  + F K  G +V+  CS+  +++E VV+K L S     ++ P
Sbjct: 481 SEDKLSILAERQLNELIHALKFKKVQG-IVYCTCSVYPEENELVVKKALESGVEGDKVRP 539

Query: 393 LNS-AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   S       S E + ++ P  +             F   L R
Sbjct: 540 YRLIPSVFSTCSDSESSTEMFFKMEPSEISSGC---------FLAVLER 579


>gi|328956982|ref|YP_004374368.1| transcription antitermination protein NusB [Carnobacterium sp.
           17-4]
 gi|328673306|gb|AEB29352.1| transcription antitermination protein NusB [Carnobacterium sp.
           17-4]
          Length = 147

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 1   MK-SGMNARLVSSHLLSCV-----MRKRISLTCLL--DLEYGDSAFRLLSQRDQILVRAI 52
           M  +  + R  +   L  +     + K  ++   L  + E  D    +L       +  +
Sbjct: 1   MSLTRRDIREKALQSLFQLSANEELSKEEAMQQALTSEAELADEVETVLVP---SYLDLL 57

Query: 53  VNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110
           V+  L     ID  +   L + SL R   +   ++R+++ +++Y  DV D   ++ A+E 
Sbjct: 58  VSGVLEKQDEIDEKIKAHLENWSLNRLAKTDLMIIRIAIFEMMYVSDVPDRVALNEALEI 117

Query: 111 AKRDKENRHFA 121
            K+  + +   
Sbjct: 118 TKKYSDEKSRK 128


>gi|260775291|ref|ZP_05884188.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608472|gb|EEX34637.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 155

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 13/135 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVRAIVNVTLRFL 60
              +      + ++  + +       +                 D    R ++   +   
Sbjct: 18  LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALVAPDTDVAYFRDLLTGVVLSH 77

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119
             +D+ +       +         LLR+++ ++    DV    V++ A+E AK       
Sbjct: 78  TELDSKIRPYTARPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEES 137

Query: 120 FAKLVNSILRRVSRE 134
             K VN +L + +  
Sbjct: 138 -HKFVNGVLDKAAPH 151


>gi|184155740|ref|YP_001844080.1| transcription antitermination protein NusB [Lactobacillus fermentum
           IFO 3956]
 gi|238692985|sp|B2GD68|NUSB_LACF3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|183227084|dbj|BAG27600.1| transcription termination factor [Lactobacillus fermentum IFO 3956]
          Length = 139

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--ILVRAIVNVTL 57
           M       R V+   L  ++         +D E        L+ +++    +  +V    
Sbjct: 1   MTFKRRRIREVAFQTLFAMV-----SDPEVDREQLYKELLPLAPQEEVPAYLEELVTGVS 55

Query: 58  RFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                 D  ++  L    SL R +     +LR+++ ++ Y  DV     +D A+E  K+ 
Sbjct: 56  EHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEALEMTKKF 115

Query: 115 KENRHFA 121
            +++   
Sbjct: 116 SDDKSRK 122


>gi|312883802|ref|ZP_07743521.1| transcription antitermination protein NusB [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368551|gb|EFP96084.1| transcription antitermination protein NusB [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 155

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 13/135 (9%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVRAIVNVTLRFL 60
              +      + ++  + +       +                 D    R ++   +   
Sbjct: 18  LQAIYSWQITKENVANIEEQFLSGDKYDEEEHHAQEPALSTPDTDVAYFRDLLTGVVLSH 77

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119
             +D+ +       +         LLR+++ ++    DV    V++ A+E AK       
Sbjct: 78  TELDSKIRPYTARPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEES 137

Query: 120 FAKLVNSILRRVSRE 134
             K VN +L + +  
Sbjct: 138 -HKFVNGVLDKAAPH 151


>gi|296803510|ref|XP_002842608.1| NOL1/NOP2/Sun domain family protein [Arthroderma otae CBS 113480]
 gi|238838927|gb|EEQ28589.1| NOL1/NOP2/Sun domain family protein [Arthroderma otae CBS 113480]
          Length = 538

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 92/309 (29%), Gaps = 88/309 (28%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV----LDLCAAPGGKTAQ-------- 258
            I S   + EG   +QD ++  P  L    +        +D CAAPG KT          
Sbjct: 211 DITSTLSYKEGRLILQDKASCFPAYLLLGDHPGRWEGDLVDGCAAPGNKTTHLASLLSSS 270

Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA-------VL 311
            +   ++V +LD S  R + L+  + +  +  E +  +   D+      D        +L
Sbjct: 271 RVPQRSRVFSLDASPSRSKILQEMVKKAGVG-ERVTVLPGQDFLALDPEDRRFRQVTGLL 329

Query: 312 VDAPCSSTGTIRRHP----------------------DVLWTRDTDDI------------ 337
           +D  CS +G  +R                             +                 
Sbjct: 330 LDPSCSGSGITKREDVPQLILPKSKSELGSTRSSKGSKNRKRKRESPPAPSSAASPPDGA 389

Query: 338 ------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPV 388
                  K A  Q +++     F      V +S CS+ ++++E VV +VL    +     
Sbjct: 390 DESARLAKLANLQSQIVEHAFGFPAAT-RVTYSTCSIHQEENEGVVARVLASSAARRRGW 448

Query: 389 ELVP-----------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
            L P                    +   S     A   E  IR  P           G  
Sbjct: 449 RLEPRTEQAKGLQKWHHRGMQSPPSASDSGPSLSAEEAEACIRCWP-------TGDEGTG 501

Query: 432 GFFAVALRR 440
           GFF     R
Sbjct: 502 GFFVAIFVR 510


>gi|254414272|ref|ZP_05028039.1| transcription antitermination factor NusB, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178947|gb|EDX73944.1| transcription antitermination factor NusB, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 213

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     I+    R    ID +L   +    + R     + +LR++VA++ +L + D   +
Sbjct: 113 RAYAIEILQAIRRRQVEIDEILVKSLKDWQINRLPRIDRDILRIAVAEMAFLGIPDRVAI 172

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
           + A+E AKR   ++   + VN +LRRV+    
Sbjct: 173 NEAIELAKRY-SDQEGHRFVNGVLRRVTTCIN 203


>gi|12843991|dbj|BAB26195.1| unnamed protein product [Mus musculus]
 gi|123253901|emb|CAM22670.1| NOL1/NOP2/Sun domain family, member 4 [Mus musculus]
          Length = 234

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST 319
           A D+S  R  +L+  L                     + +        D VLVD PC++ 
Sbjct: 52  ANDLSTSRTGRLQKVLHSYVPQDIREGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTD 111

Query: 320 --GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
                    ++       +       Q +LL  G+   KPGG VV+S CSL    +E VV
Sbjct: 112 RHSLHEEENNIFQRSRKKERQMLPMLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV 171

Query: 378 QKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDG 432
           Q  +        I V++  L+      +D      S +    + P+++            
Sbjct: 172 QGAIELLANQYNIKVQVEDLSHFRKLFMDTFCFFPSCQVGELVIPNLMVNFGP------- 224

Query: 433 FFAVALRRL 441
            +   L RL
Sbjct: 225 MYFCKLHRL 233


>gi|300934532|ref|ZP_07149788.1| transcription antitermination protein NusB [Corynebacterium
           resistens DSM 45100]
          Length = 204

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           S   AR  +  ++     +    +  + +            +        IV  T   L 
Sbjct: 13  SRFKARRRAVDIIFEAEFRDLDPVKIVEERVELAKDPANAVKPVPEYTATIVEGTATNLD 72

Query: 62  RIDAVL--DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
            ID  +  +      L R     + +LRV+  ++L+ D V +   +   +E A +   ++
Sbjct: 73  AIDDAISMNLASEWRLDRLPAVDRAVLRVAAWELLFNDEVPNQVAMTEGIELAAQYSHDK 132

Query: 119 HFA 121
             A
Sbjct: 133 APA 135


>gi|241894790|ref|ZP_04782086.1| transcription antitermination protein NusB [Weissella
           paramesenteroides ATCC 33313]
 gi|241872002|gb|EER75753.1| transcription antitermination protein NusB [Weissella
           paramesenteroides ATCC 33313]
          Length = 139

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 3   SGMNARLVSSHLLSCV-MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    R  +   L  + +     +   +                   + ++V   +    
Sbjct: 5   NRHQIRQAAFQSLFGLALNPTADVDTTITQVLVGDPEIAWEDEIPADLTSVVLGVVAKQD 64

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +D ++   L    +L R   +   L+R+++ +  + DV     V+ A++ A    +++ 
Sbjct: 65  ELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKFTDVPAKIAVNEALQLAHDFTDDKS 124

Query: 120 FAKLVNSILRR 130
               +N IL +
Sbjct: 125 RK-FINGILNK 134


>gi|22096363|sp|P74395|NUSB_SYNY3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 221

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R   +ID  L   +    L R     Q +LR+++A++ YL V     +
Sbjct: 120 RKFALELIGTVCRRRQQIDEQLQEAMVDWQLSRLAKIDQDILRLAIAELDYLGVPQKVAI 179

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130
           + AVE AKR    +   + +N +LRR
Sbjct: 180 NEAVELAKRYSG-QDGHRFINGVLRR 204


>gi|325569721|ref|ZP_08145768.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
           12755]
 gi|325157277|gb|EGC69442.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
           12755]
          Length = 154

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 1   MKS---GMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILV----RAI 52
           M         R ++   L  +   +  +    +          L+ +  +  V      +
Sbjct: 1   MSKELSRHEIRKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYLDQL 60

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109
           V     +   +D V+   L     + R       +LR+++ +++Y+D V +   ++ A+E
Sbjct: 61  VAGVCHYKEALDEVIQSHLKAGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIE 120

Query: 110 QAKRDKENRHFA 121
            AK   +++   
Sbjct: 121 LAKTFSDDQSRK 132


>gi|70947828|ref|XP_743492.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56523015|emb|CAH87948.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 247

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            I   + FQ+ +L   +  +K     ++S CS  ++++E+V++ VL  +           
Sbjct: 152 KIKNLSTFQKDILNHALITIKTAKTFIYSTCSFFEEENEQVIKNVLEKNLDFYIENAGTD 211

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440
            +            +  +R  P+             G F   + R+
Sbjct: 212 KFL--FKNGKYEFSDKCVRTFPN--------RDNCRGIFICKMCRK 247


>gi|311108723|ref|YP_003981576.1| transcription antitermination factor NusB [Achromobacter
           xylosoxidans A8]
 gi|310763412|gb|ADP18861.1| transcription antitermination factor NusB [Achromobacter
           xylosoxidans A8]
          Length = 164

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 12  SHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
              +   + R         +++         S+ D    + +++  LR  P +       
Sbjct: 32  LQGVYAWLLRGGEGTQDAGEIDAHLRDTEDFSEADAQWFKTLLHGVLREAPALRQRFTPY 91

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +   L         +L +   ++++  +V     ++ AVE AK       F 
Sbjct: 92  VDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGFK 143


>gi|126735761|ref|ZP_01751506.1| Fmu (Sun) [Roseobacter sp. CCS2]
 gi|126714948|gb|EBA11814.1| Fmu (Sun) [Roseobacter sp. CCS2]
          Length = 269

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 44/295 (14%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M  G  AR+ ++  +   ++        L     +S F     +D+  VR  V   LR  
Sbjct: 1   MTPG--ARVAAAIAVLDHVQNGAVAEQALTAWARNSRFAG--SKDRAAVRDHVFDVLRAK 56

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             +       L+  L  ++    + L                        +         
Sbjct: 57  RSLADGAGRDLMQRLAMREGWDIETL-----------------------FSGEGHAPAPL 93

Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
               N+ L              A    +PEW   R     G ++  A + A      + L
Sbjct: 94  NGDENAALDAPLSL------SDAARCDVPEWLWPRWRQALG-DQAEATAMAQQQRADVFL 146

Query: 181 TVKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230
            V     T    +                 G +R+ + P  I +   +  G   +QDA++
Sbjct: 147 RVNRRKATVNQAVKLLADDDISTAVHPTVEGCLRVTKNPRRIKTSAAYLTGFVELQDAAS 206

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
              V          +LD CA  GGK               + +    ++     R
Sbjct: 207 QEAVGDTPVNAGARILDYCAGGGGKALAFADQYDATVLPMILRHNACEICQRAHR 261


>gi|325283641|ref|YP_004256182.1| NusB antitermination factor [Deinococcus proteolyticus MRP]
 gi|324315450|gb|ADY26565.1| NusB antitermination factor [Deinococcus proteolyticus MRP]
          Length = 185

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 6/123 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTL 57
           S   AR  +   L    R  + L  +           D     L+       R++     
Sbjct: 14  SRRAAREFAFRALFESERGELPLEQVFMRTAAQMHEGDETLTPLTPDAIAFARSLAEGLD 73

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
                + A L   +   S  +   +   +LR++  ++++       V++ AV  A++   
Sbjct: 74  MHWDEVQAALQRTIRGWSFEQMAQTDLNVLRLAAFEMMFTPEPHPPVIESAVRIARKFGG 133

Query: 117 NRH 119
              
Sbjct: 134 EDS 136


>gi|242278127|ref|YP_002990256.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
 gi|242121021|gb|ACS78717.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
          Length = 155

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 8   RLVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           R+++  +L  +         +   + +     +  R   +   +  R ++         +
Sbjct: 14  RVLAFQVLYGLSFVPPHGGWTTERIYNQ--SPAVIRETEEDLILFARELLIGIWNAQEEL 71

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           D V+        + R       +LR++V ++++  D+     ++  +E AK+   + +  
Sbjct: 72  DEVIGRYSKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGIELAKKF-GDGNSR 130

Query: 122 KLVNSILR 129
             +N IL 
Sbjct: 131 NFINGILD 138


>gi|149185970|ref|ZP_01864285.1| NusB antitermination factor [Erythrobacter sp. SD-21]
 gi|148830531|gb|EDL48967.1| NusB antitermination factor [Erythrobacter sp. SD-21]
          Length = 150

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-----QILVRAIVNVT 56
           +S   ARL +   L     +  +   LL+  +     +++   +           +V   
Sbjct: 8   QSRSAARLGAVQALYQQQMEGTATAKLLNEFHLHRLGKVIEDEEYADADVDFFDDLVKGV 67

Query: 57  LRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113
                 ID +L   L S   L R   ++ Q+LR    +++   DV   A +   V+ AK 
Sbjct: 68  DARRAEIDELLTARLASGWTLARLDKTMLQILRAGSYELIARKDVPKAAAISEYVDVAKA 127

Query: 114 DKENRHFA 121
             ++R   
Sbjct: 128 FFDDREAK 135


>gi|157964229|ref|YP_001499053.1| transcription antitermination protein NusB [Rickettsia massiliae
           MTU5]
 gi|166918810|sp|A8F0S0|NUSB_RICM5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157844005|gb|ABV84506.1| N utilization substance protein B [Rickettsia massiliae MTU5]
          Length = 156

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 14/142 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++    +      +L     +++   L +  +        + +V   
Sbjct: 12  ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSV 71

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
              + ++D ++D  L            L+ LLRVS+ ++L+        V++   + A  
Sbjct: 72  FENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131

Query: 114 DKENRHFAKLVNSILRRVSREK 135
              N H    VNS+L ++++E 
Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152


>gi|329946651|ref|ZP_08294063.1| transcription antitermination factor NusB [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526462|gb|EGF53475.1| transcription antitermination factor NusB [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 163

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ----ILVRAIVNVTL 57
            +   AR  +  +L    ++ + ++   +     +  R +S  +        R I++   
Sbjct: 21  TARTKARRRAIEILFEADQRGMLISGDAEELRSFAQLRAVSSANHTEAPAYTREILDGVC 80

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115
             L  +D  +       +L R     + + RV+  +I+Y  DV     VD A+  ++   
Sbjct: 81  DHLADVDETIQTYAQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVAVDEAMTLSRMLS 140

Query: 116 ENRH 119
            +  
Sbjct: 141 TDES 144


>gi|297537700|ref|YP_003673469.1| NusB antitermination factor [Methylotenera sp. 301]
 gi|297257047|gb|ADI28892.1| NusB antitermination factor [Methylotenera sp. 301]
          Length = 175

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   +R +    +   M  +  +T +      D  +    + D+   + ++        
Sbjct: 35  QNRRKSRELVLKAVYRGMLNQSEMTAVYRDMAEDPDYA---KADEAYFKQLLEAVGEHAT 91

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D  +   +   +         +L++S  ++++ + +    V++  VE AK        
Sbjct: 92  ELDEKMAAFIDRQVSELSPIEHAILQISGCELMFDMSIPYRVVINEGVELAKIYGGIDG- 150

Query: 121 AKLVNSILRR 130
            K +N +L +
Sbjct: 151 HKYINGVLDK 160


>gi|163781900|ref|ZP_02176900.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883120|gb|EDP76624.1| transcription antitermination protein NusB [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 144

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 5/137 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+    AR  S  +L     +  S+  + +    +   +    R+   +  +++     L
Sbjct: 1   MRFRKKARENSLMVLYRWDIRGDSIDRIREEYVEEKGIKNREIRE--YMDKLLSTVRDKL 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADY-AVVDLAVEQAKRDKENR 118
           P ID+++       S  R  Y  + +LR+ VA++LY D  D     +  ++  KR   +R
Sbjct: 59  PEIDSLISEYSEGWSFDRLGYIERNVLRLGVAELLYADPPDPGRAFNDYLDIVKRY-ADR 117

Query: 119 HFAKLVNSILRRVSREK 135
             A+ VN IL ++ +E 
Sbjct: 118 KAARFVNGILSKIYKEH 134


>gi|223999623|ref|XP_002289484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974692|gb|EED93021.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 612

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/471 (14%), Positives = 136/471 (28%), Gaps = 94/471 (19%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFV---LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
              A V  T++ LP I+++L+     L  ++     + + LL V + ++L+     Y  +
Sbjct: 44  AAYATVCKTMQHLPAINSILNENNGKLHKAIGIDDVNSKGLLYVMIYELLFGK---YKSI 100

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
                  +   ++ +  ++     +  ++            +  P + +         E 
Sbjct: 101 RGGGRLKRMIIKHENALRIE--ADQYAAKNGGVGAGVDEDGANFPRYVRVNTLRSTVAEM 158

Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGV 222
           V  ++             K         + A       + +     S+          G 
Sbjct: 159 VDVLTKDLEDANGAKEGGKSTPTDLKQTIYADAHVPDLLVMHPFTSSLLHQKHEAVKSGK 218

Query: 223 WWVQDASASIPV------QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
             +QD S+               L +  V+D C+APG KT  L             +R  
Sbjct: 219 VVLQDKSSCFSALVLARGNSNKPLTSCDVIDACSAPGNKTCHLATLINDSIGATTDERPS 278

Query: 277 EK-----------------------LRCNLDRLHLY--------------AEDIIEMDAF 299
           ++                             R+ L+              A      D  
Sbjct: 279 KRKKKGKNDAKPMSTIFAFERSSTRFSLLQSRMQLFIPPVGDSNGISTQVAVVPTHADFL 338

Query: 300 DYCPKKLF----DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS---------ACFQRK 346
              P         A+L+D  CS +G +  +    W  D++D  +S         A FQ  
Sbjct: 339 KADPNDTQLANVRAILLDPSCSGSGIV--NNPDRWMEDSNDTNESEKKRRIQSLANFQLV 396

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
            L   +SF K    VV+S CS++ +++E V+ K L  +    +       +         
Sbjct: 397 ALKHAMSFPKVD-RVVYSTCSINNEENEVVIGKALSETNNSDDNADDGDEWVLVAPD--- 452

Query: 407 LSPEGWIRITP-----------------DMLEKIDGVSSGMDGFFAVALRR 440
                 +   P                  ++          +GFF     R
Sbjct: 453 -----CLEHWPRRGNGGGVGGLSESQAKCLIRCDGLGGDETNGFFVSYFER 498


>gi|327356906|gb|EGE85763.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 555

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 32/179 (17%)

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           R  +    +      +    K+    L   PC+         +     D D ++K +  Q
Sbjct: 343 RDDIPRLALPSSHNPNPRSNKMKRTALAPVPCTHADPAADEEEPTPAIDHDRLIKLSNLQ 402

Query: 345 RKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLR--------------------- 382
            +++    SF  P    V +S CS+  Q++E VV + L+                     
Sbjct: 403 TRIIEHAFSF--PAARRVTYSTCSIHAQENEVVVSRALKSPVAQRRGWRILSRSEQVEGL 460

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +     + P       S  + +  +  E  +R  P+          G  GFF     R
Sbjct: 461 RNWKYRGIKPEKPGDGASESLDLTGTELEACLRCWPND-------EEGTGGFFVAGFVR 512


>gi|317056629|ref|YP_004105096.1| NusB antitermination factor [Ruminococcus albus 7]
 gi|315448898|gb|ADU22462.1| NusB antitermination factor [Ruminococcus albus 7]
          Length = 137

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 6/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M      R  +  L    +     L  + +       F  +       V+A+V       
Sbjct: 1   MAGRREVRQAAFLLSFEKLFMDDELENIFNSAQELGEFISVDDE----VKALVRGIFEKQ 56

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             +D+++        + R       +LR+++ + LY D V     +  AV   ++     
Sbjct: 57  DELDSIISKYSDKRAVSRIPKVDLSVLRLAIYEALYDDKVPVNVAISEAVSLTEKYALEP 116

Query: 119 HFA 121
             A
Sbjct: 117 DIA 119


>gi|209875695|ref|XP_002139290.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
 gi|209554896|gb|EEA04941.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
          Length = 439

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 30/224 (13%)

Query: 190 AHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
              L           +    E+  I S     E   +  D ++ +   L    N  S+LD
Sbjct: 59  IKDLTYKSWCFPNTFIITKEENELINSTRIIQEEQVYFMDGASILVSYLLDLDNQSSILD 118

Query: 248 LCAAPGGK---------------TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-- 290
            CAAPGGK               T     +   +   + +  RL++L+  L++       
Sbjct: 119 TCAAPGGKSLIFSFRISRLLQLNTCTTDKNNVLLVCNEYNYTRLQRLKTILNKYLGKNLM 178

Query: 291 ----EDIIEMDAFDYC------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340
                ++I  DA D         K+ F+ +L+DAPC+S   +  +  +        + KS
Sbjct: 179 NELKIELIRSDASDISLLKALKKKRTFNRILLDAPCTSDRHLLLNKSIQ-NWSLGTVKKS 237

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           A  Q ++L      ++ GG++++  C+L   ++++V+ K  +  
Sbjct: 238 AKKQLEILSNIYPLLEKGGMLLYCTCALSLIENDDVISKFCKKF 281


>gi|226323831|ref|ZP_03799349.1| hypothetical protein COPCOM_01606 [Coprococcus comes ATCC 27758]
 gi|225208015|gb|EEG90369.1| hypothetical protein COPCOM_01606 [Coprococcus comes ATCC 27758]
          Length = 77

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 1  MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
          M +   G+  R ++  +L  +  +      +L        ++ LS++D+  +  +   T 
Sbjct: 1  MTTNNQGVGTRELALMILLEIE-RGEKSHIVLRQVLE--KYQYLSKQDRAFLTRLAEGTT 57

Query: 58 RFLPRIDAVLDFVLISSLPR 77
               +D +++        +
Sbjct: 58 ERRIELDYIINQFSKVKTEK 77


>gi|157825345|ref|YP_001493065.1| transcription antitermination protein NusB [Rickettsia akari str.
           Hartford]
 gi|166215710|sp|A8GMD2|NUSB_RICAH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157799303|gb|ABV74557.1| transcription antitermination protein NusB [Rickettsia akari str.
           Hartford]
          Length = 156

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 7   ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++    +      +L     DS+   L+   +        + +V   
Sbjct: 12  ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKILVKSV 71

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQA 111
              + ++D ++D  L            L+ LLR  + ++L+        V++   + A
Sbjct: 72  FENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYTDIA 129


>gi|238019309|ref|ZP_04599735.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748]
 gi|237864008|gb|EEP65298.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748]
          Length = 134

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 9/123 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR  +  +L            +   +       +    D+    +I+N  L    
Sbjct: 5   RNRREARQYAFQMLYANEFH------VDQNDVQFPEGHMHKSMDKAYANSIINGVLSASE 58

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENR 118
            IDA L        +       + +LR+++ ++            ++ A++ AK    + 
Sbjct: 59  TIDATLQPFCKSRKVENLDKVDRAILRIALWEMTNEADPLEPSIAINEAIQLAKDFGSDS 118

Query: 119 HFA 121
            + 
Sbjct: 119 SYK 121


>gi|303274771|ref|XP_003056700.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461052|gb|EEH58345.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 734

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 12/113 (10%)

Query: 334 TDDIVKSACFQRKLLLQGISFVK-PGGIVVFSNCSLDKQDSEEVVQKVLRS--------- 383
                     QR++L +    V   GG +V++ CSL   ++  V +   R+         
Sbjct: 611 PVSDASWPALQRRVLARFAGCVAADGGALVYATCSLLDAENVGVSRWFERAKWTTGAGEG 670

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           +    E V   +              +   R T      +   + G DGF+  
Sbjct: 671 ADASGEDVDFVTFEPDPFPRGWPGEEDADARAT--HEVALRPDAHGCDGFYIA 721


>gi|225165824|ref|ZP_03727605.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
 gi|224799937|gb|EEG18385.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
          Length = 201

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 71/190 (37%), Gaps = 17/190 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           L ++ LL   + +R  +  LL +         L +  +   + +V   LR L RI+ ++ 
Sbjct: 19  LAAARLLVRWLDERARVDGLLAVL-----PANLGRTGRARCQNLVLGALRHLGRIEGIIT 73

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQIL------YLDVADYAVVDLAVEQ---AKRDKENRH 119
            ++          +Q +  ++  +++      ++    +  V+        A+    N  
Sbjct: 74  PLMSRMPR---AEVQAVFLLAGYELIEGGGDGHVAKVAHHAVEQTKRLASQAEARMVNAI 130

Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179
             KL +++       ++    R+A     P W  ER    +G E   A+ +  + P  + 
Sbjct: 131 VRKLASALADEQPPGRLATAARLAQYYSHPAWMVERWLAQFGAESTRALLEWNLRPASVY 190

Query: 180 LTVKFDIETW 189
             +++   + 
Sbjct: 191 ARLRYTPPSL 200


>gi|331245525|ref|XP_003335399.1| nucleus protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309314389|gb|EFP90980.1| nucleus protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 551

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 103/359 (28%), Gaps = 53/359 (14%)

Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY 160
              V    + A   +         +      S   + +      +     WF +      
Sbjct: 160 RQAVSRVSDLADSFQRGTDSVDEDSGGTNLNSPRWMRVNTIKWSVDQAKGWFIDAGWTQV 219

Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220
                L    +      +       +       +AV+              +  L  + +
Sbjct: 220 SSLEALPNQTSDSPDQLLVFAEDEHVAGLLALPSAVV--------------LAKLAPYVD 265

Query: 221 GVWWVQDASASIPVQLFGTLNNLSV----LDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
           G    QD ++ +P QL    +  +     +D  AAPG KT                    
Sbjct: 266 GRLIAQDKASCMPAQLLLGDHPHNPPIEVIDATAAPGNKTTM------------------ 307

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
                   R  ++A +  +                  +  S+        D    RD + 
Sbjct: 308 -LSSIVGPRGKVWAFEKDKQRFQVLTEMIKLAGCTTGSGISNRLDHLSQTDSQKKRDENR 366

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
           I   + FQ  ++   + F      V +S CS+ K+++EEVV ++L       E++    +
Sbjct: 367 IQSLSRFQTTIVSHALRFPSVH-QVAYSTCSIWKEENEEVVFRILNK----PEMIDKGWS 421

Query: 397 YWKSIDMAMALSPEGWIRI----------TPDMLEKIDGVSSGMDGFFAVALRR-LIQP 444
             +  D  +  S   W R             + + + D       GFFA    R + QP
Sbjct: 422 LKEVKDTFLNNSKTPWGRTGEVISTKEKHLSERMIRFDPSVDQTIGFFAAVFHRPVPQP 480


>gi|301112627|ref|XP_002998084.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262112378|gb|EEY70430.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 490

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 130/449 (28%), Gaps = 95/449 (21%)

Query: 51  AIVNVTLRFLPRIDAVLD------FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           A+V  TLR+ P +  +L         L +    K+     L+ V++  +L          
Sbjct: 39  ALVCETLRYKPLLRELLAAVPECYKALKTPKNAKEPP--ALVFVALYDLLLGR------- 89

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
                            + +                  A ++ +    K           
Sbjct: 90  -----------------QKIQGGGYVKKALMQHQTSFRAALARLKIKRKVASNEALLPPE 132

Query: 165 VLAISDACISPLYI-DLTVKFDIETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEG 221
                 A    + I  L    +                   L  LP    +        G
Sbjct: 133 NRQQHLALPRYVRINTLLASPEEAKAFASEYDAKQDRDVRDLLVLPSGTELHEHEMVKSG 192

Query: 222 VWWVQDASASIPVQLFG------TLNNLSVLDLCAAPGGKTAQ--------------LIV 261
              +QD ++  P  +          N   V+D CAAPG KT+                  
Sbjct: 193 KLVLQDKASCFPAYVLHGEHAEAQDNQGDVIDACAAPGNKTSHLAMLLQQQDGDGEDATC 252

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDA----VLVDAPC 316
              +V A D S +RL+ L+  +          +      D             +L+D  C
Sbjct: 253 PKRRVFAFDRSPKRLDLLKRRMTLAGAATRVQVELQSFLDVPVDDDMYRNVRSILLDPSC 312

Query: 317 SSTGTIRRHPDVLWTRDTDDI------------------VKSACFQRKLLLQGISF--VK 356
           S +G   R   +L    + D                      A FQ + L +  SF  VK
Sbjct: 313 SGSGMTNRLDHLLDIASSHDTVLEPDHGAEYEEDTAKRLQSLADFQLQALRKAFSFPQVK 372

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-----VELVPLNSAYWKSIDMAMALSPEG 411
               VV+S CS+ +++ EEVV   L S           L P  +++ +       L+ E 
Sbjct: 373 ---RVVYSTCSIFQKEDEEVVAAALESEENSGVTRPFVLKPALTSWPRRGLQVAGLTAEQ 429

Query: 412 WIRITPDMLEKIDGVSSGMDGFFA--VAL 438
                   L + +G+    +GFF     L
Sbjct: 430 A-----QALVRANGLEDSTNGFFVKNARL 453


>gi|163858272|ref|YP_001632570.1| transcription antitermination protein NusB [Bordetella petrii DSM
           12804]
 gi|163262000|emb|CAP44302.1| N utilization substance protein B homolog [Bordetella petrii]
          Length = 138

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 6/114 (5%)

Query: 12  SHLLSCVMRKRISLTC---LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
              +   + +    T     +D    D+     S+ D    + +++  L+    +     
Sbjct: 1   MQGVYAWLLRGGEGTQDAGEIDAHLRDA--DDFSEADAQWFKTLLHGVLQEAGGLRERFT 58

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121
             +   L         +L +   ++  +L+V     ++ AVE AK       F 
Sbjct: 59  PYIDRPLGELSPVEHGILLIGSYELVHHLEVPYKVAINEAVELAKSFGGTDGFK 112


>gi|257784275|ref|YP_003179492.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
 gi|257472782|gb|ACV50901.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
          Length = 167

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 12/131 (9%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLL--DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
              AR  +  LL        S+  +L  D    +              R +         
Sbjct: 8   RTRARSQALQLLFQAEATNRSVLEVLGGDYTLSEGPLDE-------YARLLAVGADGIRD 60

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            +D ++       S+ R     + LLR+S+ +IL   +V     ++  V+ A+    +  
Sbjct: 61  DLDDIIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGDDS 120

Query: 120 FAKLVNSILRR 130
             + +N +L R
Sbjct: 121 -PRFINGVLGR 130


>gi|168335572|ref|ZP_02693635.1| transcription termination factor [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 135

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 3   SGMNARLVSSHLLSCV-MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   AR+    +L  +    +     +L+    D     +  + +  +       +  + 
Sbjct: 2   TRRQARICVVQMLYNLSFHDKEQAQEILNENLLD-----IKGKVKTFISETFEGIVDNMD 56

Query: 62  RIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
            ID  ++  ++  +L R       +LR++V +I Y  D+     ++ AVE A ++     
Sbjct: 57  AIDTEIEANLVDWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIA-QEYSTEK 115

Query: 120 FAKLVNSILRRVSR 133
             K +N IL  +++
Sbjct: 116 SGKFINGILGNMNK 129


>gi|225561290|gb|EEH09570.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 556

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 40/166 (24%), Gaps = 32/166 (19%)

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
              +               +               D   + K +  Q +++     F  P
Sbjct: 355 QDPHDRGMKRKRPAPSPVPTLGRPAASEHQNTTNIDPGRLTKLSNLQTRIVEHAFRF--P 412

Query: 358 GGIVV-FSNCSLDKQDSEEVVQKVLR-------------SSPIPVELVPLNSAYWKSIDM 403
               V +S CS+  Q++E V+ + L+                    L           + 
Sbjct: 413 NATRVTYSTCSIHAQENEVVIARALKSPVAQRRGWRIISRHEQVEGLRKWKYRGITPGES 472

Query: 404 AMALSP---------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          EG +R  P+  E          GFF     R
Sbjct: 473 GDGGGEIWDLTETEREGCLRCWPNDKEC-------TGGFFVAGFVR 511


>gi|257893505|ref|ZP_05673158.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
 gi|257829884|gb|EEV56491.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
          Length = 152

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 3   SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILV----RAIVNVTL 57
           S    R ++   L  +     ++    +          ++++ +   V      +V    
Sbjct: 13  SRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLDTLVGGVC 72

Query: 58  RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                +D V++  L ++  + R       +LR+++ ++ Y  DV     ++ A+E AK  
Sbjct: 73  AKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTF 132

Query: 115 KENRHFA 121
            ++R   
Sbjct: 133 SDDRSRK 139


>gi|225018827|ref|ZP_03708019.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
           DSM 5476]
 gi|224948387|gb|EEG29596.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
           DSM 5476]
          Length = 132

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK     R  +  L+   +     ++ ++        F + S      V A+     + +
Sbjct: 1   MK-RHQMRENAFILVFEKIFNDDDVSEVIAAAEECGEFEVNSD-----VIALFTGVQQHI 54

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             +D ++   L    + R    +  +LR++V +I+Y   V     ++ AVE AK      
Sbjct: 55  SELDRLISEHLTKWNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELAKEYATQE 114

Query: 119 HFA 121
             A
Sbjct: 115 DAA 117


>gi|197301786|ref|ZP_03166856.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
           29176]
 gi|197299226|gb|EDY33756.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
           29176]
          Length = 140

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 3/120 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R     LL               L+Y        + +D+  ++         +  I
Sbjct: 3   RTELREHIFKLLFQ-EEFNREEDMQEHLKYYFMTLENAADKDKDYIQEKYEAVAGHIAEI 61

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           D +++         R       +LR++V ++ +  +V     ++ AVE AKR       +
Sbjct: 62  DELINQYAKGWKTTRMNKVDLAILRLAVYEMKWDEEVPVGVAINEAVELAKRFSGGDSPS 121


>gi|257059341|ref|YP_003137229.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           8802]
 gi|256589507|gb|ACV00394.1| NusB antitermination factor [Cyanothece sp. PCC 8802]
          Length = 235

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R    ID  L+  ++   L R     + +LR++VA+IL+L++ +   +
Sbjct: 141 REYALELIGAVNRRRTEIDQQLEAVLVDWQLNRLPKIDRDILRIAVAEILFLEIPNKVAI 200

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
           + A+E AKR  ++  + + +N +LRR +  
Sbjct: 201 NEAIEMAKRYSDDEGY-RFINGVLRRFTER 229


>gi|89256456|ref|YP_513818.1| Sun protein [Francisella tularensis subsp. holarctica LVS]
 gi|167010375|ref|ZP_02275306.1| ribosomal RNA small subunit methyltransferase B [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367791|ref|ZP_04983812.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           tularensis subsp. holarctica 257]
 gi|290953007|ref|ZP_06557628.1| Sun protein [Francisella tularensis subsp. holarctica URFT1]
 gi|295313773|ref|ZP_06804347.1| Sun protein [Francisella tularensis subsp. holarctica URFT1]
 gi|89144287|emb|CAJ79570.1| Sun protein [Francisella tularensis subsp. holarctica LVS]
 gi|134253602|gb|EBA52696.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
           tularensis subsp. holarctica 257]
          Length = 158

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 10/162 (6%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           MN R +++  +  ++  + SL   L +E       LL  +D+  ++ +     R    ++
Sbjct: 1   MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56

Query: 65  AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
            ++   L      K      L+ +    I  +    YA ++  V  A +  +     KLV
Sbjct: 57  KIIALYLTQKTKVKAKV---LIMLGALHIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112

Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKER 164
           N ILR ++R   ++  +        +PEW  + L+  Y  + 
Sbjct: 113 NRILREMTRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDH 154


>gi|15892127|ref|NP_359841.1| transcription antitermination protein NusB [Rickettsia conorii str.
           Malish 7]
 gi|20139047|sp|Q92J65|NUSB_RICCN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|15619255|gb|AAL02742.1| N utilization substance protein B [Rickettsia conorii str. Malish
           7]
          Length = 156

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 14/142 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++    +      +L     ++A   L +  +        + +V   
Sbjct: 12  ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNAITDLPENLKISLSISHFKMLVKSV 71

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
              + ++D ++D  L            L+ LLRVS+ ++L+        V++   + A  
Sbjct: 72  FENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131

Query: 114 DKENRHFAKLVNSILRRVSREK 135
              N H    VNS+L ++++E 
Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152


>gi|299473126|emb|CBN78702.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 621

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
            + A FQ + LL+ +SF +    V +S CS+   ++E+VV K L   P P  L   ++A 
Sbjct: 400 ARLAAFQLQGLLKAMSFPQVQ-RVCYSTCSVHAVENEDVVAKALDQQPTPSPLTTASTAS 458

Query: 398 WKSIDMAMALSPEGWIRITP--------------DMLEKIDGVSSGMDGFFAVALRR 440
             +   +        +   P                L + D      +GFF     R
Sbjct: 459 ASAAASSERFELSRCLSRWPRRGLAVSGLSKAQAACLARTDPFEDETNGFFVAVFER 515


>gi|319937360|ref|ZP_08011767.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
 gi|319807726|gb|EFW04319.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
          Length = 134

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 3/117 (2%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR  ++  +   +    SL  +L     +      S+      R +V  TL+       +
Sbjct: 9   AREKATIGVYQNLLVDSSLEDIL-TFLSEEKTLTKSEETMAFSRWLVETTLQNKESYQTL 67

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           ++  L       R     + +L ++  ++L  D+    V++ AV  AK+  ++  + 
Sbjct: 68  IEKHLKKGWKFERLSMMEKAILMIAACELLESDLPKTIVINEAVLNAKKFCDDDSYK 124


>gi|213966115|ref|ZP_03394302.1| transcription antitermination protein NusB [Corynebacterium
           amycolatum SK46]
 gi|213951213|gb|EEB62608.1| transcription antitermination protein NusB [Corynebacterium
           amycolatum SK46]
          Length = 234

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA-IVNVTLRFLPRIDAVLDFV 70
             LL    ++ + +  LL+          L           IV      +  ID+ +   
Sbjct: 39  VDLLFEAEQRGVDVVKLLEERLEMVRNPDLDVNPIAEYTEQIVRGVAAEIIGIDSTISSY 98

Query: 71  L--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           L     L R     + +LR+S  ++ Y  DV     V   VE A  +      A  +N++
Sbjct: 99  LTEEWPLRRLPAVDRAILRLSTWELFYNSDVPPRVAVVEGVELA-SEYSTDVAAPYINAV 157

Query: 128 LR 129
           L 
Sbjct: 158 LD 159


>gi|218246294|ref|YP_002371665.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           8801]
 gi|254772631|sp|B7K4P4|NUSB_CYAP8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218166772|gb|ACK65509.1| NusB antitermination factor [Cyanothece sp. PCC 8801]
          Length = 211

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R    ID  L+  ++   L R     + +LR++VA+IL+L++ +   +
Sbjct: 117 REYALELIGAVNRRRTEIDQQLEAVLVDWQLNRLPKIDRDILRIAVAEILFLEIPNKVAI 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
           + A+E AKR  ++  + + +N +LRR +  
Sbjct: 177 NEAIEMAKRYSDDEGY-RFINGVLRRFTER 205


>gi|312793191|ref|YP_004026114.1| nusb antitermination factor [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180331|gb|ADQ40501.1| NusB antitermination factor [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 134

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 12  SHLLSCV--MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +L        +  +          +        D+  +  ++   ++   RID +++ 
Sbjct: 1   MKILYAYRFEDGQQDIMEFYKKFRELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEK 60

Query: 70  VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                 L R      +L+R++V ++L+  DV     +D AV+ A            VN I
Sbjct: 61  YSKDWPLSRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119

Query: 128 LRR 130
           L R
Sbjct: 120 LGR 122


>gi|238650352|ref|YP_002916204.1| transcription antitermination protein NusB [Rickettsia peacockii
           str. Rustic]
 gi|259514892|sp|C4K0Q5|NUSB_RICPU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238624450|gb|ACR47156.1| transcription antitermination protein NusB [Rickettsia peacockii
           str. Rustic]
          Length = 156

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 14/142 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++    +      +L     +++   L +  +        + +V   
Sbjct: 12  ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSV 71

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
              + ++D ++D  L            L+ LLRVS+ ++L+        V++   + A  
Sbjct: 72  FENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131

Query: 114 DKENRHFAKLVNSILRRVSREK 135
              N H    VNS+L ++++E 
Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152


>gi|301095058|ref|XP_002896631.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108861|gb|EEY66913.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 383

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 307 FDAVLVDAPCSSTGTIRR----------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           +D VLVDA C+  G+IR              V    ++ +I +    Q  L+  G S ++
Sbjct: 266 YDKVLVDAECTHDGSIRHLQRLITGAKWEEYVRDHLNSSEIERILKLQHGLIRNGFSLLR 325

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           PGG +++S CSL  + +E++V K L   P+ 
Sbjct: 326 PGGTMIYSTCSLSVKQNEDIVSKFLEDQPLA 356


>gi|148244614|ref|YP_001219308.1| N utilization substance protein B [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326441|dbj|BAF61584.1| N utilization substance protein B [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 141

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 10/121 (8%), Positives = 36/121 (29%), Gaps = 5/121 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                 R      L   +     +   ++ ++ +     +S   ++    +    L    
Sbjct: 5   TPKQRTRERVIQALYQYLVSGGEV-FQIEQQFLNQKQGKIS---KVFFSDLFINILENRF 60

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +D ++   +             +L +   ++ +  +V    V++ ++  AK       +
Sbjct: 61  VLDELITSTISRGTEELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAKLYGAEGSY 120

Query: 121 A 121
            
Sbjct: 121 K 121


>gi|125624663|ref|YP_001033146.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493471|emb|CAL98448.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071455|gb|ADJ60855.1| transcription termination protein nusB [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 325

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 11/126 (8%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAVL 67
             + +   +    L     ++   +L+   D+            +V+  L     ++  +
Sbjct: 197 EQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINI 256

Query: 68  DFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
              L    S  R     Q +L+VS  +IL+ D  +   V+ A+E +K D  +   ++ +N
Sbjct: 257 SKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIELSK-DFSDEKSSRFIN 315

Query: 126 SILRRV 131
            +L   
Sbjct: 316 GVLTNF 321


>gi|116511490|ref|YP_808706.1| transcription termination factor [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107144|gb|ABJ72284.1| Transcription termination factor [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 325

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 11/126 (8%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAVL 67
             + +   +    L     ++   +L+   D+            +V+  L     ++  +
Sbjct: 197 EQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINI 256

Query: 68  DFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
              L    S  R     Q +L+VS  +IL+ D  +   V+ A+E +K D  +   ++ +N
Sbjct: 257 SKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIELSK-DFSDEKSSRFIN 315

Query: 126 SILRRV 131
            +L   
Sbjct: 316 GVLTNF 321


>gi|218132225|ref|ZP_03461029.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992884|gb|EEC58884.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC
           43243]
          Length = 135

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R     +L  V     S                ++  ++  +   V+  +  LP 
Sbjct: 6   TRHTIRKHIFSMLFRVEFHD-SSEISSQDGLYLDTIDNITDEERGYMEKRVSAIVELLPE 64

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           ID  L+ V     L R       +LR++V ++LY  D+     ++ AVE AK    +   
Sbjct: 65  IDKKLESVSEGWKLERMGKVELTILRLAVYELLYDDDIPANVAINEAVELAKVYGGDTSP 124

Query: 121 A 121
           A
Sbjct: 125 A 125


>gi|46203265|ref|ZP_00051777.2| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 188

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 7/173 (4%)

Query: 3   SGMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
            G+ AR V+   ++ ++   + ++L   L                   +        R L
Sbjct: 18  PGLAARHVAREAVATLLGAARGLALEDALAQAGRGVGLAPADAALARAIATASF---RRL 74

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
             I A L   L   LP  +  L  LL    AQIL L VAD+A VDL+V  AK D + +H 
Sbjct: 75  GFIRAALAARLRDGLPDDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHL 134

Query: 121 AKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDA 171
           A LVN++LRR++RE+  +            P+W   R    YG+E    I+ A
Sbjct: 135 APLVNAVLRRIARERDAIRAEEGDPLGGNTPDWLARRWREAYGEEAARKIAAA 187


>gi|282850207|ref|ZP_06259586.1| transcription antitermination factor NusB [Veillonella parvula ATCC
           17745]
 gi|282579700|gb|EFB85104.1| transcription antitermination factor NusB [Veillonella parvula ATCC
           17745]
          Length = 134

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR  +  +L                     A       D+    +I+   L  + 
Sbjct: 5   RNRREARQYAFQMLYANEFHTNQNDVQFPEGNIHKAM------DKAYANSIIEGVLSNVE 58

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENR 118
            IDA L        +       + +LR++V ++      +     ++ A++ AK    + 
Sbjct: 59  AIDATLQPFCKSRKVANLDKVDRSILRIAVWEMTNKVEPLEPSIAINEAIQLAKEFGSDA 118

Query: 119 HFA 121
            + 
Sbjct: 119 SYK 121


>gi|307611473|emb|CBX01142.1| hypothetical protein LPW_28411 [Legionella pneumophila 130b]
          Length = 66

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 17/80 (21%)

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           +V++ CS+   ++E  + + +            +         +         +I P   
Sbjct: 1   MVYATCSIMSDENELQIARFVAEH---------SDCQVSDGKWSWGRWTGHGQQILPG-- 49

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   GMDGFF   LR+
Sbjct: 50  ------EHGMDGFFYSVLRK 63


>gi|288549985|ref|ZP_05968867.2| transcription antitermination factor NusB [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316874|gb|EFC55812.1| transcription antitermination factor NusB [Enterobacter
           cancerogenus ATCC 35316]
          Length = 118

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83
           S   + D+EY   + + +   D +  R +++        +D ++   L   L       +
Sbjct: 2   SHNDIADVEYQFLSEQDVKDVDVLYFRELLSGVATNSAYLDGLMKPYLSRLLEELGQVEK 61

Query: 84  QLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
            +LR+++ ++    DV     ++ A+E AK         K VN +L + +      
Sbjct: 62  AVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGVLDKAAPAIRPH 116


>gi|217967431|ref|YP_002352937.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
 gi|254772636|sp|B8E246|NUSB_DICTD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|217336530|gb|ACK42323.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
          Length = 144

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 13/130 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R      L      +            +  F   S + Q+    + +  L +    D ++
Sbjct: 9   REKVLEFLFQKDLGQE----------IEVDFSDFSPQGQVFAYKLYDGALYYKDLADEII 58

Query: 68  DFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
                +  L R     + +LR+++A++  + D+     V+ AVE AK+        + +N
Sbjct: 59  SKFSKNWKLERIGTIEKNILRMAIAEMFTFSDIPQGVTVNEAVELAKKYVSPE-AGRFIN 117

Query: 126 SILRRVSREK 135
            ILR + R  
Sbjct: 118 GILRNIVRNW 127


>gi|172040644|ref|YP_001800358.1| transcription antitermination protein NusB [Corynebacterium
           urealyticum DSM 7109]
 gi|171851948|emb|CAQ04924.1| N utilization substance protein B [Corynebacterium urealyticum DSM
           7109]
          Length = 248

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   AR  +  +L     + I  +  + +            +        IV      L 
Sbjct: 41  ARYKARRRAVDILFEAEFRDIDPVDIMEERAELAKDQENQIKPIPEYTSQIVPGVASNLD 100

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            ID  +   L    +L R     + ++RV+  ++++  DV     +   +E A  +  + 
Sbjct: 101 AIDDAIAVHLTSDWTLDRIPAVDRAVMRVAAWELMFNADVPHRVALSEGIELA-SEYSHV 159

Query: 119 HFAKLVNSILR 129
                VN++L 
Sbjct: 160 KAPDYVNAVLD 170


>gi|148705817|gb|EDL37764.1| NOL1/NOP2/Sun domain family, member 7, isoform CRA_a [Mus musculus]
          Length = 761

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 144/453 (31%), Gaps = 44/453 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66
           ++++   +  +R     +++        S+ R   +  Q L   +   TL++   ++++ 
Sbjct: 54  AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 113

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D  + SS       L  L+ V +            ++    E     +E  +      +
Sbjct: 114 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 171

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
            L             ++   I+PE  +++ +          I+ + IS   +   ++   
Sbjct: 172 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 231

Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237
                 I +   K+ AV      + +        ++++    +     QD S S+ V   
Sbjct: 232 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 291

Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L N+    L    G               +          + +    R    R+    
Sbjct: 292 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 351

Query: 291 EDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIR-------RHPDVLWTRD------ 333
            +I+         K         +L+   CSS G           H D    +D      
Sbjct: 352 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEDKSLLQDLSQGGL 411

Query: 334 -TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D +      Q + L   + F K    +V+  CS+ K+++E+VV+K L      V++ P
Sbjct: 412 PKDKLETLVQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQP 470

Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
                          + LS + + R+ P  +  
Sbjct: 471 YRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNN 503


>gi|158564127|sp|Q14AW5|NSUN7_MOUSE RecName: Full=Putative methyltransferase NSUN7; AltName:
           Full=NOL1/NOP2/Sun domain family member 7
          Length = 724

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 144/453 (31%), Gaps = 44/453 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66
           ++++   +  +R     +++        S+ R   +  Q L   +   TL++   ++++ 
Sbjct: 54  AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 113

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D  + SS       L  L+ V +            ++    E     +E  +      +
Sbjct: 114 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 171

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
            L             ++   I+PE  +++ +          I+ + IS   +   ++   
Sbjct: 172 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 231

Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237
                 I +   K+ AV      + +        ++++    +     QD S S+ V   
Sbjct: 232 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 291

Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L N+    L    G               +          + +    R    R+    
Sbjct: 292 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 351

Query: 291 EDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIR-------RHPDVLWTRD------ 333
            +I+         K         +L+   CSS G           H D    +D      
Sbjct: 352 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEDKSLLQDLSQGGL 411

Query: 334 -TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D +      Q + L   + F K    +V+  CS+ K+++E+VV+K L      V++ P
Sbjct: 412 PKDKLETLVQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQP 470

Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
                          + LS + + R+ P  +  
Sbjct: 471 YRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNN 503


>gi|109732410|gb|AAI15879.1| NOL1/NOP2/Sun domain family, member 7 [Mus musculus]
 gi|109733310|gb|AAI16659.1| NOL1/NOP2/Sun domain family, member 7 [Mus musculus]
          Length = 704

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 144/453 (31%), Gaps = 44/453 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66
           ++++   +  +R     +++        S+ R   +  Q L   +   TL++   ++++ 
Sbjct: 54  AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 113

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D  + SS       L  L+ V +            ++    E     +E  +      +
Sbjct: 114 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 171

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
            L             ++   I+PE  +++ +          I+ + IS   +   ++   
Sbjct: 172 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 231

Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237
                 I +   K+ AV      + +        ++++    +     QD S S+ V   
Sbjct: 232 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 291

Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L N+    L    G               +          + +    R    R+    
Sbjct: 292 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 351

Query: 291 EDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIR-------RHPDVLWTRD------ 333
            +I+         K         +L+   CSS G           H D    +D      
Sbjct: 352 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEDKSLLQDLSQGGL 411

Query: 334 -TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D +      Q + L   + F K    +V+  CS+ K+++E+VV+K L      V++ P
Sbjct: 412 PKDKLETLVQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQP 470

Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
                          + LS + + R+ P  +  
Sbjct: 471 YRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNN 503


>gi|46519166|ref|NP_081878.1| putative methyltransferase NSUN7 [Mus musculus]
          Length = 700

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 144/453 (31%), Gaps = 44/453 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66
           ++++   +  +R     +++        S+ R   +  Q L   +   TL++   ++++ 
Sbjct: 55  AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 114

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D  + SS       L  L+ V +            ++    E     +E  +      +
Sbjct: 115 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 172

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
            L             ++   I+PE  +++ +          I+ + IS   +   ++   
Sbjct: 173 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 232

Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237
                 I +   K+ AV      + +        ++++    +     QD S S+ V   
Sbjct: 233 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 292

Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L N+    L    G               +          + +    R    R+    
Sbjct: 293 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 352

Query: 291 EDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIR-------RHPDVLWTRD------ 333
            +I+         K         +L+   CSS G           H D    +D      
Sbjct: 353 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEDKSLLQDLSQGGL 412

Query: 334 -TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D +      Q + L   + F K    +V+  CS+ K+++E+VV+K L      V++ P
Sbjct: 413 PKDKLETLVQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQP 471

Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422
                          + LS + + R+ P  +  
Sbjct: 472 YRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNN 504


>gi|163816787|ref|ZP_02208150.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
 gi|158448044|gb|EDP25039.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
          Length = 153

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRV 88
           D E     +  +S++D+  +   V   L     ID  +  +     LPR       +LR+
Sbjct: 40  DEEDDPMLYASVSEKDKEYITDKVMDILAHKDAIDNTISEISEGWKLPRIGKEELAILRL 99

Query: 89  SVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
            V +++Y + + +   ++ AVE AK+   +   +K VN++L +
Sbjct: 100 GVYEVVYDETIPEKVAINEAVELAKKYC-DVSASKFVNALLAK 141


>gi|303250733|ref|ZP_07336929.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252024|ref|ZP_07338195.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649454|gb|EFL79639.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650403|gb|EFL80563.1| transcription antitermination protein NusB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 98

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 41  LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVA 99
           ++  D    R ++  T+ ++  ID  L   L  +        + +LR+S  ++ Y LDV 
Sbjct: 1   MNGVDLPYFRKLLRGTVLYVEAIDNDLRPFLDRAEDEVDPIERTILRLSAYELKYELDVP 60

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
              V++  +E AK    +    K +N IL +
Sbjct: 61  YKVVINEGIEVAK-VFGSDDSHKYINGILDK 90


>gi|308233793|ref|ZP_07664530.1| NusB antitermination factor [Atopobium vaginae DSM 15829]
 gi|328943758|ref|ZP_08241223.1| transcription antitermination factor NusB [Atopobium vaginae DSM
           15829]
 gi|327491727|gb|EGF23501.1| transcription antitermination factor NusB [Atopobium vaginae DSM
           15829]
          Length = 239

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  L+     + + +  +L   Y  S   L         + +   T     ++
Sbjct: 13  RTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD-----FGKRLALGTDELRDKL 67

Query: 64  DAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           DA++  V+ +  L R     + +LR+++ +++   DV     ++ +V  AK        +
Sbjct: 68  DALISRVITNWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAKAY-GTDESS 126

Query: 122 KLVNSILRRVSREK 135
             VN +L +V+R  
Sbjct: 127 HFVNGVLGQVARMM 140


>gi|260664418|ref|ZP_05865270.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
           SJ-7A-US]
 gi|260561483|gb|EEX27455.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
           SJ-7A-US]
          Length = 262

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
             +  Q+++L + +  +K GG +++S C+   ++ E++   ++      +    +N A  
Sbjct: 1   MCSSRQKEILNEAVKMLKTGGSLLYSTCTYAPEEDEKICAYLVNKLGFKLVKTKVNVASA 60

Query: 399 KSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
                   L+  E   R  P                F    
Sbjct: 61  GVPAWGENLAGIEYARRFWPQDEIGEGQ--------FLAKF 93


>gi|184200984|ref|YP_001855191.1| antitermination factor NusB [Kocuria rhizophila DC2201]
 gi|183581214|dbj|BAG29685.1| transcription antitermination protein NusB [Kocuria rhizophila
           DC2201]
          Length = 138

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 7/132 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  +   AR+ +  +L    ++  S+   L +   +++   ++         I+      
Sbjct: 1   MSGARSKARVRAVEILFEAEQRNESVRDAL-VRRRENSSSPINP----YTVEILEGVDER 55

Query: 60  LPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
              ID  L+       L R     +  LRV   ++LY       V         R     
Sbjct: 56  REDIDEFLETYSQGWALGRMPAVDRNALRVGAWELLYNSEIPDGVAVAEAVAVTRQLSTD 115

Query: 119 HFAKLVNSILRR 130
              + VN +L R
Sbjct: 116 DSPRFVNGLLGR 127


>gi|34580842|ref|ZP_00142322.1| N utilization substance protein B [Rickettsia sibirica 246]
 gi|229586404|ref|YP_002844905.1| transcription antitermination protein NusB [Rickettsia africae
           ESF-5]
 gi|259514889|sp|C3PMK2|NUSB_RICAE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|28262227|gb|EAA25731.1| N utilization substance protein B [Rickettsia sibirica 246]
 gi|228021454|gb|ACP53162.1| N utilization substance protein B [Rickettsia africae ESF-5]
          Length = 156

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 14/142 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++    +      +L     +++   L +  +        + +V   
Sbjct: 12  ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSV 71

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
              + ++D ++D  L            L+ LLRVS+ ++L+        V++   + A  
Sbjct: 72  FENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131

Query: 114 DKENRHFAKLVNSILRRVSREK 135
              N H    VNS+L ++++E 
Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152


>gi|261417120|ref|YP_003250803.1| NusB antitermination factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373576|gb|ACX76321.1| NusB antitermination factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325378|gb|ADL24579.1| N utilization substance protein B [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 146

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR+ +  LL  +     ++   L         + L    +     +V++ L     +D+
Sbjct: 8   PARVFAMQLLYAMEISGGTVADALPGVLEA---QPLQDNMKKYGMKLVDLVLAHKAELDS 64

Query: 66  VLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
            ++       + R     + +LR+++ ++LY  ++    V+  AV+ A +   +  
Sbjct: 65  EIEACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKFSTDSS 120


>gi|320334545|ref|YP_004171256.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211]
 gi|319755834|gb|ADV67591.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211]
          Length = 169

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLE-----YGDSAFRLLSQRDQILVRAIVNVT 56
            S   AR  +  +L    R ++ L   L+       +GD  +  L        R ++   
Sbjct: 13  NSRRAAREFAFRVLFESERGQVPLQEALNRARLNMAHGDDTYPELGDEAVDFARDLLGAQ 72

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
                 +D++L   +   +  +   +   +LR++ A++L  +     +++  V  A++  
Sbjct: 73  TARRAEVDSLLTRTIRGWTFEQMAQTDLNVLRLATAEMLRGEDPHPPIIESFVRVARKFG 132

Query: 116 ENRH 119
               
Sbjct: 133 GEDS 136


>gi|332686256|ref|YP_004456030.1| transcription termination protein NusB [Melissococcus plutonius
           ATCC 35311]
 gi|332370265|dbj|BAK21221.1| transcription termination protein NusB [Melissococcus plutonius
           ATCC 35311]
          Length = 158

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 3   SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILV----RAIVNVTL 57
           +    R  +   L  +     ++    +D       + ++S+  + L+      +V+   
Sbjct: 7   TRREIREKALQALFPLDFNTELTKQDAIDYALMLDNYEVISEDQENLIPTYLDFLVDGVC 66

Query: 58  RFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                +D V+  +L    +  R       +LR++V +++Y  DV     ++ A+E AK+ 
Sbjct: 67  SHKNELDQVIKRLLGKNWTFERLSKIDTVILRMAVFEMMYSSDVPAPVALNEALELAKKY 126

Query: 115 KENRHFAKLVNSILRRVSREKIEL 138
             + +  K  N IL  V +E  + 
Sbjct: 127 -SDDNARKFTNGILANVLKEIEKH 149


>gi|163747437|ref|ZP_02154789.1| transcription antitermination factor NusB [Oceanibulbus indolifex
           HEL-45]
 gi|161379290|gb|EDQ03707.1| transcription antitermination factor NusB [Oceanibulbus indolifex
           HEL-45]
          Length = 158

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55
           MKS   +RL +   L  +     ++  +                 + + D      ++  
Sbjct: 14  MKS--ASRLYAVQALFQMEHSAQTVDVVRHEFIDHRFGAVYEGDEMQEGDVDHFSRVLED 71

Query: 56  TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            + +   ID + +  +    ++ R   +L+ L R + A+  + +     V+   V+ A  
Sbjct: 72  AVNYQAPIDQMANRAIVAKWAIARIDPTLRALFRAAGAEFRHDETPPRVVIKEYVDVAHA 131

Query: 114 DKENRHFAKLVNSILRRV 131
                     VN++L  +
Sbjct: 132 FFPEGREPSFVNAVLDHM 149


>gi|67516687|ref|XP_658229.1| hypothetical protein AN0625.2 [Aspergillus nidulans FGSC A4]
 gi|40746012|gb|EAA65168.1| hypothetical protein AN0625.2 [Aspergillus nidulans FGSC A4]
 gi|259489109|tpe|CBF89108.1| TPA: NOL1/NOP2/sun domain protein, putative (AFU_orthologue;
           AFUA_1G17090) [Aspergillus nidulans FGSC A4]
          Length = 578

 Score = 66.8 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 35/135 (25%)

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRS------- 383
              D ++K +  Q +++   ++F  P    V +S CS+   ++E VVQ++L S       
Sbjct: 416 ITQDRLLKLSNLQFRIVTHALAF--PAARKVTYSTCSIHLLENEAVVQRILESDIAKRRG 473

Query: 384 -----------------SPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDG 425
                                    P      +  ++ ++     G +R  P        
Sbjct: 474 WRVLRRDEQPEGLKKWIHRGVKREEPSADGAIEGGEVNLSDEELGGCLRCWPGD------ 527

Query: 426 VSSGMDGFFAVALRR 440
              G  GFF     R
Sbjct: 528 -EEGTGGFFVAGFVR 541


>gi|270290385|ref|ZP_06196610.1| transcription antitermination factor NusB [Pediococcus acidilactici
           7_4]
 gi|270281166|gb|EFA26999.1| transcription antitermination factor NusB [Pediococcus acidilactici
           7_4]
          Length = 134

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQI--LVRAIVNVT 56
           M  +    R  +  ++        S+       E          + D     +  +V   
Sbjct: 1   MSLNRHQMRESAFKMIFA-----QSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGV 55

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
              +  I+  +   L    ++ R     + +L++   +I + +V +   ++ A+E AK+ 
Sbjct: 56  QENVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTEVPNNVAINEALELAKKY 115

Query: 115 KENRHFAKLVNSILRR 130
             +    K +N +L  
Sbjct: 116 -TDEKARKFINGVLSN 130


>gi|296423439|ref|XP_002841261.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637498|emb|CAZ85452.1| unnamed protein product [Tuber melanosporum]
          Length = 710

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
           ++   S+                D     A FQ +++   + F      + +S CS+  Q
Sbjct: 350 LNTLPSAVEYDDSRVWRQRGTVEDRTFSLADFQVRMIEHAMRF-PSATRITYSTCSIHAQ 408

Query: 372 DSEEVVQKVL----RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           ++E VV   L          V      +         +    EG  ++  D   + +   
Sbjct: 409 ENERVVMAALNTSVARRRGWVTEPRHLNKMRDWFRRGILEECEGNEQVA-DSCIRFNPWV 467

Query: 428 SGMDGFFAVALRRLIQPK 445
            G  GFF     R  Q +
Sbjct: 468 DGGIGFFVAVFIRNEQER 485


>gi|229075890|ref|ZP_04208866.1| N utilization substance protein B [Bacillus cereus Rock4-18]
 gi|228707205|gb|EEL59402.1| N utilization substance protein B [Bacillus cereus Rock4-18]
          Length = 114

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
            + ++V   +     IDA +   L    L R     + +LRV+V ++ Y+ ++     ++
Sbjct: 26  FLESLVVGFVDNKEEIDAAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTIN 85

Query: 106 LAVEQAKRDKENRHFAKLVNSILRR 130
            A+E AK    +    + +N +L  
Sbjct: 86  EAIEIAKTF-GDEESRRFINGVLSN 109


>gi|255971431|ref|ZP_05422017.1| antitermination protein NusB [Enterococcus faecalis T1]
 gi|255974044|ref|ZP_05424630.1| antitermination protein NusB [Enterococcus faecalis T2]
 gi|256617900|ref|ZP_05474746.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
 gi|256761733|ref|ZP_05502313.1| antitermination protein NusB [Enterococcus faecalis T3]
 gi|256957069|ref|ZP_05561240.1| antitermination protein NusB [Enterococcus faecalis DS5]
 gi|256960159|ref|ZP_05564330.1| antitermination protein NusB [Enterococcus faecalis Merz96]
 gi|256962598|ref|ZP_05566769.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
 gi|257077865|ref|ZP_05572226.1| antitermination protein NusB [Enterococcus faecalis JH1]
 gi|257081230|ref|ZP_05575591.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
 gi|257083886|ref|ZP_05578247.1| antitermination protein NusB [Enterococcus faecalis Fly1]
 gi|257086336|ref|ZP_05580697.1| antitermination protein NusB [Enterococcus faecalis D6]
 gi|257089386|ref|ZP_05583747.1| antitermination protein nusB [Enterococcus faecalis CH188]
 gi|257415595|ref|ZP_05592589.1| antitermination protein NusB [Enterococcus faecalis AR01/DG]
 gi|257418568|ref|ZP_05595562.1| transcription antitermination protein nusB [Enterococcus faecalis
           T11]
 gi|257421226|ref|ZP_05598216.1| transcription antitermination protein nusB [Enterococcus faecalis
           X98]
 gi|294780567|ref|ZP_06745930.1| transcription antitermination factor NusB [Enterococcus faecalis
           PC1.1]
 gi|300859628|ref|ZP_07105716.1| transcription antitermination factor NusB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962449|gb|EET94925.1| antitermination protein NusB [Enterococcus faecalis T1]
 gi|255966916|gb|EET97538.1| antitermination protein NusB [Enterococcus faecalis T2]
 gi|256597427|gb|EEU16603.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
 gi|256682984|gb|EEU22679.1| antitermination protein NusB [Enterococcus faecalis T3]
 gi|256947565|gb|EEU64197.1| antitermination protein NusB [Enterococcus faecalis DS5]
 gi|256950655|gb|EEU67287.1| antitermination protein NusB [Enterococcus faecalis Merz96]
 gi|256953094|gb|EEU69726.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
 gi|256985895|gb|EEU73197.1| antitermination protein NusB [Enterococcus faecalis JH1]
 gi|256989260|gb|EEU76562.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
 gi|256991916|gb|EEU79218.1| antitermination protein NusB [Enterococcus faecalis Fly1]
 gi|256994366|gb|EEU81668.1| antitermination protein NusB [Enterococcus faecalis D6]
 gi|256998198|gb|EEU84718.1| antitermination protein nusB [Enterococcus faecalis CH188]
 gi|257157423|gb|EEU87383.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG]
 gi|257160396|gb|EEU90356.1| transcription antitermination protein nusB [Enterococcus faecalis
           T11]
 gi|257163050|gb|EEU93010.1| transcription antitermination protein nusB [Enterococcus faecalis
           X98]
 gi|294452394|gb|EFG20833.1| transcription antitermination factor NusB [Enterococcus faecalis
           PC1.1]
 gi|295113845|emb|CBL32482.1| transcription antitermination factor NusB [Enterococcus sp. 7L76]
 gi|300850446|gb|EFK78195.1| transcription antitermination factor NusB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480217|gb|ADX79656.1| transcription antitermination factor NusB [Enterococcus faecalis
           62]
          Length = 150

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 3   SGMNARLVSSHLLS-----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           +    R  +   L        + K+ ++   L  +  +             +  +V    
Sbjct: 7   TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 66

Query: 58  RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                +D V+   L    S+ R       +LR+++ ++LY  DV +   ++ AVE +K+ 
Sbjct: 67  SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 126

Query: 115 KENRHFAKLVNSILRRVSR 133
            ++R     VN +L  V +
Sbjct: 127 SDDRSRK-FVNGVLSNVMK 144


>gi|67459511|ref|YP_247135.1| transcription antitermination protein NusB [Rickettsia felis
           URRWXCal2]
 gi|75536082|sp|Q4UKG1|NUSB_RICFE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|67005044|gb|AAY61970.1| N utilization substance protein B [Rickettsia felis URRWXCal2]
          Length = 156

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++    +      +L     +++   L +  +        + +V   
Sbjct: 12  ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSTTALPENLKISLSISHFKMLVKSV 71

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
              + ++D ++D  L            L+ LLRVS+ ++L+        V++   + A  
Sbjct: 72  FENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131

Query: 114 DKENRHFAKLVNSILRRVSREKI 136
              N H    VNSIL ++++E  
Sbjct: 132 M-LNEHEIGFVNSILDKIAQENN 153


>gi|321438781|emb|CBZ12541.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 710

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 4/132 (3%)

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           +   N  R+H     I E +      K    +    A   + G      D L    +   
Sbjct: 459 RGVGNEYRMHHMNLGIAEGEVRSQTEKAPSASSQPLASSHAGGGEHSKQDAL----SPSA 514

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q KLL  G   ++PGG +V++ CS     +E VV + L  +    E V      
Sbjct: 515 ASIFALQSKLLDNGYRQLRPGGTLVYATCSYSYVQNEYVVHRFLERANAVNEKVDQGDVR 574

Query: 398 WKSIDMAMALSP 409
            +     +   P
Sbjct: 575 GRPTANEVPRRP 586


>gi|294793720|ref|ZP_06758857.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44]
 gi|294455290|gb|EFG23662.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44]
          Length = 134

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR  +  +L                     A       D+    +I+   L  + 
Sbjct: 5   RNRREARQYAFQMLYANEFHTDQNDVQFPEGNIHKAM------DKAYANSIIEGVLSNVE 58

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENR 118
            IDA L        +       + +LR++V ++      +     ++ A++ AK    + 
Sbjct: 59  AIDATLQPFCKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAINEAIQLAKEFGSDA 118

Query: 119 HFA 121
            + 
Sbjct: 119 SYK 121


>gi|73537071|ref|XP_847954.1| hypothetical protein [Leishmania major strain Friedlin]
          Length = 1085

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 4/132 (3%)

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           +   N  R+H     I E +      K    +    A   + G      D L    +   
Sbjct: 459 RGVGNEYRMHHMNLGIAEGEVRSQTEKAPSASSQPLASSHAGGGEHSKQDAL----SPSA 514

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397
                 Q KLL  G   ++PGG +V++ CS     +E VV + L  +    E V      
Sbjct: 515 ASIFALQSKLLDNGYRQLRPGGTLVYATCSYSYVQNEYVVHRFLERANAVNEKVDQGDVR 574

Query: 398 WKSIDMAMALSP 409
            +     +   P
Sbjct: 575 GRPTANEVPRRP 586


>gi|191638628|ref|YP_001987794.1| transcription antitermination protein NusB [Lactobacillus casei
           BL23]
 gi|238693054|sp|B3WEY5|NUSB_LACCB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|190712930|emb|CAQ66936.1| N utilization substance protein B homolog (Protein nusB)
           [Lactobacillus casei BL23]
 gi|327382670|gb|AEA54146.1| Transcription termination protein nusB [Lactobacillus casei LC2W]
 gi|327385864|gb|AEA57338.1| Transcription termination protein nusB [Lactobacillus casei BD-II]
          Length = 135

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 30  DLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQ 84
                D+ +  +  +D      +  +V   L     +DA L   L     L R       
Sbjct: 22  PEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWSLSRLTKPDLI 81

Query: 85  LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           +LR+ + +I Y + + + A ++ A+  AKR  +++  AK VN IL    +
Sbjct: 82  ILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQS-AKFVNGILANFIQ 130


>gi|59800707|ref|YP_207419.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA 1090]
 gi|194097970|ref|YP_002001018.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998442|ref|ZP_04718366.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           35/02]
 gi|240080146|ref|ZP_04724689.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA19]
 gi|240112360|ref|ZP_04726850.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           MS11]
 gi|240115100|ref|ZP_04729162.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID18]
 gi|240117383|ref|ZP_04731445.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID1]
 gi|240122940|ref|ZP_04735896.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID332]
 gi|240125192|ref|ZP_04738078.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127648|ref|ZP_04740309.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493161|ref|ZP_05106332.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           1291]
 gi|260441085|ref|ZP_05794901.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI2]
 gi|268594303|ref|ZP_06128470.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           35/02]
 gi|268596297|ref|ZP_06130464.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA19]
 gi|268598417|ref|ZP_06132584.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           MS11]
 gi|268600773|ref|ZP_06134940.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID18]
 gi|268603079|ref|ZP_06137246.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID1]
 gi|268681559|ref|ZP_06148421.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID332]
 gi|268683788|ref|ZP_06150650.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686028|ref|ZP_06152890.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044417|ref|ZP_06570126.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI2]
 gi|293399595|ref|ZP_06643748.1| transcription antitermination factor NusB [Neisseria gonorrhoeae
           F62]
 gi|75432566|sp|Q5F9Y0|NUSB_NEIG1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238690178|sp|B4RJT3|NUSB_NEIG2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|59717602|gb|AAW89007.1| putative transcription termination factor [Neisseria gonorrhoeae FA
           1090]
 gi|193933260|gb|ACF29084.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512201|gb|EEH61546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           1291]
 gi|268547692|gb|EEZ43110.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           35/02]
 gi|268550085|gb|EEZ45104.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA19]
 gi|268582548|gb|EEZ47224.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           MS11]
 gi|268584904|gb|EEZ49580.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID18]
 gi|268587210|gb|EEZ51886.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID1]
 gi|268621843|gb|EEZ54243.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID332]
 gi|268624072|gb|EEZ56472.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626312|gb|EEZ58712.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011311|gb|EFE03307.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI2]
 gi|291610164|gb|EFF39286.1| transcription antitermination factor NusB [Neisseria gonorrhoeae
           F62]
 gi|317163726|gb|ADV07267.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 141

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    +R ++   +   +  R +   +       S F    + D+ L   +   T   
Sbjct: 1   MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L  +  ++  + +     +++ A+E  K      
Sbjct: 58  AADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFAKLVNSILRR 130
              K VN IL +
Sbjct: 118 G-HKFVNGILDK 128


>gi|332975638|gb|EGK12527.1| NusB antitermination factor [Psychrobacter sp. 1501(2011)]
          Length = 244

 Score = 66.5 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 45/136 (33%), Gaps = 12/136 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55
            AR  +   L   +            E+  +    ++ R +               ++  
Sbjct: 31  KARRFALQGLYEWLMTDHRFEQTGKGEWKANPPHDIAARTRASNAMHTVHLGYYHTLMRE 90

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
               +  ++A++   L   + +       +L +   ++ + L +    V+D A++     
Sbjct: 91  IPEQIDELEALIAEHLDRQIDQIDMVEHAVLLIGAYELKHSLHIPYKVVLDEAMKL-NTH 149

Query: 115 KENRHFAKLVNSILRR 130
                  KL+N+++ +
Sbjct: 150 FGATDAHKLINAVMDK 165


>gi|116495122|ref|YP_806856.1| transcription antitermination protein NusB [Lactobacillus casei
           ATCC 334]
 gi|122263461|sp|Q038F8|NUSB_LACC3 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|116105272|gb|ABJ70414.1| NusB antitermination factor [Lactobacillus casei ATCC 334]
          Length = 135

 Score = 66.5 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 30  DLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQ 84
                D+ +  +  +D      +  +V   L     +DA L   L     L R       
Sbjct: 22  PEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDLI 81

Query: 85  LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           +LR+ + +I Y + + + A ++ A+  AKR  +++  AK VN IL    +
Sbjct: 82  ILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQS-AKFVNGILANFIQ 130


>gi|253578527|ref|ZP_04855799.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850845|gb|EES78803.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 140

 Score = 66.5 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M+     R     LL          ++  L L +       LS++DQ  +       L  
Sbjct: 1   MRRREQ-REHIFKLLFMTEFNSEEEMSEQLSLYF--DTLEELSEKDQEYMSRKYRHVLEK 57

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
           L  IDA+L+         R        LR++V ++ Y  DV     ++ AVE AKR    
Sbjct: 58  LDEIDALLNETSNGWKTKRMSRVDLTALRLAVYELKYDKDVPTGVAINEAVELAKRFGGE 117

Query: 118 RHFA 121
              +
Sbjct: 118 TSGS 121


>gi|121634481|ref|YP_974726.1| transcription antitermination protein NusB [Neisseria meningitidis
           FAM18]
 gi|161869623|ref|YP_001598790.1| transcription antitermination protein NusB [Neisseria meningitidis
           053442]
 gi|254804565|ref|YP_003082786.1| transcription termination factor nusB-family protein [Neisseria
           meningitidis alpha14]
 gi|166215703|sp|A1KSU6|NUSB_NEIMF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035894|sp|A9M2W7|NUSB_NEIM0 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|120866187|emb|CAM09927.1| putative RNA polymerase antitermination factor [Neisseria
           meningitidis FAM18]
 gi|161595176|gb|ABX72836.1| N utilization substance protein B [Neisseria meningitidis 053442]
 gi|254668107|emb|CBA04659.1| transcription termination factor nusB-family protein [Neisseria
           meningitidis alpha14]
 gi|254670531|emb|CBA06337.1| N utilization substance protein B [Neisseria meningitidis alpha153]
 gi|308388870|gb|ADO31190.1| putative RNA polymerase antitermination factor [Neisseria
           meningitidis alpha710]
 gi|325131863|gb|EGC54563.1| transcription antitermination factor NusB [Neisseria meningitidis
           M6190]
 gi|325135725|gb|EGC58337.1| transcription antitermination factor NusB [Neisseria meningitidis
           M0579]
 gi|325137913|gb|EGC60488.1| transcription antitermination factor NusB [Neisseria meningitidis
           ES14902]
 gi|325141944|gb|EGC64384.1| transcription antitermination factor NusB [Neisseria meningitidis
           961-5945]
 gi|325197903|gb|ADY93359.1| transcription antitermination factor NusB [Neisseria meningitidis
           G2136]
 gi|325202521|gb|ADY97975.1| transcription antitermination factor NusB [Neisseria meningitidis
           M01-240149]
 gi|325207729|gb|ADZ03181.1| transcription antitermination factor NusB [Neisseria meningitidis
           NZ-05/33]
          Length = 141

 Score = 66.5 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 6/132 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    +R ++   +   +  R +   +         F    + D+ L   +   T   
Sbjct: 1   MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFA---KADEELFNKLFFGTQTN 57

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L  +  ++  + +     +++ A+E  K      
Sbjct: 58  AADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117

Query: 119 HFAKLVNSILRR 130
              K VN IL +
Sbjct: 118 G-HKFVNGILDK 128


>gi|294791859|ref|ZP_06757007.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27]
 gi|294457089|gb|EFG25451.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27]
          Length = 134

 Score = 66.5 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR  +  +L                     A       D+    +I+   L  + 
Sbjct: 5   RNRREARQYAFQMLYANEFHTDQNDVQFPEGNIHKAM------DKAYANSIIEGVLSNVE 58

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENR 118
            IDA L        +       + +LR++V ++      +     ++ A++ AK    + 
Sbjct: 59  AIDATLQPFCKSRKVANLDKVDRSILRIAVWEMTNKVEPLEPSIAINEAIQLAKDFGSDA 118

Query: 119 HFA 121
            + 
Sbjct: 119 SYK 121


>gi|294894842|ref|XP_002774979.1| williams-beuren syndrome critical region protein, putative
           [Perkinsus marinus ATCC 50983]
 gi|239880762|gb|EER06795.1| williams-beuren syndrome critical region protein, putative
           [Perkinsus marinus ATCC 50983]
          Length = 461

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 97/296 (32%), Gaps = 53/296 (17%)

Query: 185 DIETWAHKLNAVMLPTGGIRL--------KELPESIVSLPGFAEGVWWVQDASASIPVQL 236
             E+   +L +  + +    L            ++++  P   +    +QD  + +    
Sbjct: 134 SRESAIEQLGSAGIKSKADPLIPDVITVDPWNSKALIESPLVKDFTLVLQDRGSCLSAHS 193

Query: 237 ----FGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRLEKLRCNLDRL 286
                     ++V+D CA+PG KT  +            + A+++  +R + L   L + 
Sbjct: 194 LLAGVQPGEKITVVDACASPGSKTIHMLQLMRYRKIEGTMVAMELDPKRAKVLLDRLAKA 253

Query: 287 HL----------------------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
                                      ++   D   Y   ++   V +D  CS +G +  
Sbjct: 254 GFLPRDGTRTSEEVAHLSAAHSPDINVEVRVGDFIKYSSAEVTH-VNLDPSCSGSGLVDV 312

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           H D   +     + K + FQ ++L   ++       V +S CS+  +++ EVV+K L   
Sbjct: 313 HADSE-SVGAQRLRKLSSFQCRMLDHALTAFPAVQTVCYSTCSIKNEENGEVVKKALNR- 370

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                L       W     +    P    R       ++        GF+   L +
Sbjct: 371 -----LQSGYRREWPFEVGSCWKEPTHGAR-----DVQVRPEVDHCRGFYLCKLVK 416


>gi|256372479|ref|YP_003110303.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009063|gb|ACU54630.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
          Length = 145

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R     LL     K  +   LL               +   +R  +         IDA L
Sbjct: 16  RERVLELLYEADTKGEAPADLLR------------GDEPAFIRERIRGLTERRSEIDAQL 63

Query: 68  DFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
               +   L R     + +LR++ A++L         +  AV+ A R    R  A
Sbjct: 64  TAHVIGWQLERLAPIDRAILRLATAELLEASTPPSVAIAEAVKLADRYSTERSAA 118


>gi|239632001|ref|ZP_04675032.1| NusB antitermination factor [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526466|gb|EEQ65467.1| NusB antitermination factor [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 139

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57
           M + M +R    H +     + +           D+ +  +  +D      +  +V   L
Sbjct: 1   MTNKMESR----HAIREAAFQALFALATNPEADKDAVYAEVLPQDTEVPAYLTTLVEAVL 56

Query: 58  RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
                +DA L   L     L R       +LR+ + +I Y + + + A ++ A+  AKR 
Sbjct: 57  SKQADLDAALTPQLKKGWTLNRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLAKRY 116

Query: 115 KENRHFAKLVNSILRRVSR 133
            +++  AK VN IL    +
Sbjct: 117 SDDQS-AKFVNGILANFIQ 134


>gi|269797978|ref|YP_003311878.1| NusB antitermination factor [Veillonella parvula DSM 2008]
 gi|269094607|gb|ACZ24598.1| NusB antitermination factor [Veillonella parvula DSM 2008]
          Length = 134

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 9/123 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR  +  +L                     A       D+    +I+   L    
Sbjct: 5   RNRREARQYAFQMLYANEFHTDQNDVQFPEGNIHKAM------DKAYANSIIEGVLSNAE 58

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENR 118
            IDA L        +       + +LR++V ++      +     ++ A++ AK    + 
Sbjct: 59  AIDATLQPFCKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAINEAIQLAKEFGSDA 118

Query: 119 HFA 121
            + 
Sbjct: 119 SYK 121


>gi|126656189|ref|ZP_01727573.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
 gi|126622469|gb|EAZ93175.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
          Length = 209

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R    ID  L+ VL    L R     Q +LR++VA+IL+LDV +   +
Sbjct: 117 REYTLELIGTINRRRQEIDQQLEAVLKDWQLRRLAKIDQDILRLAVAEILFLDVPEKVAI 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
           + AVE AKR  ++  + + +N +LRR +  
Sbjct: 177 NEAVELAKRYSDDDGY-RFINGVLRRFTDH 205


>gi|158313539|ref|YP_001506047.1| NusB antitermination factor [Frankia sp. EAN1pec]
 gi|158108944|gb|ABW11141.1| NusB antitermination factor [Frankia sp. EAN1pec]
          Length = 135

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 28  LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLL 86
            ++      A       D      +V   +  L  IDA +       +L R     + +L
Sbjct: 6   AMETLAAHRAQADPPVPD--YTSDLVEGVVAHLAEIDAHIARFAQGWTLDRMPPVDRNIL 63

Query: 87  RVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           R++V ++ +  DV D  V+D AV  AK     R  A
Sbjct: 64  RIAVLELFWRSDVPDRVVIDEAVRLAKTISTERSPA 99


>gi|315031736|gb|EFT43668.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0017]
          Length = 156

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 3   SGMNARLVSSHLLS-----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           +    R  +   L        + K+ ++   L  +  +             +  +V    
Sbjct: 13  TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDSEDLVPTYLDLLVGGVC 72

Query: 58  RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                +D V+   L    S+ R       +LR+++ ++LY  DV +   ++ AVE +K+ 
Sbjct: 73  SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 132

Query: 115 KENRHFAKLVNSILRRVSR 133
            ++R     VN +L  V +
Sbjct: 133 SDDRSRK-FVNGVLSNVMK 150


>gi|322488581|emb|CBZ23828.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 703

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           +   N  R+H     I E +      K          P +++           T      
Sbjct: 452 RGVDNEYRMHHMNLGIAEGEVGPQTEKTP---FASSQPLANSPAGSGEHSKKNTPSPSSA 508

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
              A  Q KLL  G   ++PGG +V++ CS     +E VV++ L  +    E V 
Sbjct: 509 SLFA-LQSKLLDNGYRQLRPGGTLVYATCSYSYVQNEYVVRRFLERANAVNEKVD 562


>gi|159027396|emb|CAO86880.1| nusB [Microcystis aeruginosa PCC 7806]
          Length = 217

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 46  QILVRAIVNVTLRFLPRID-AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R    I+  +   ++   L R     + +L+++VA++LYLD+     +
Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALVDWQLHRLPRIDRDILQIAVAEMLYLDIPQKVAI 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130
           + A+E AKR  ++  + + +N +LRR
Sbjct: 177 NEAIELAKRYSDDEGY-RFINGVLRR 201


>gi|327273507|ref|XP_003221522.1| PREDICTED: putative methyltransferase NSUN7-like [Anolis
           carolinensis]
          Length = 724

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/468 (15%), Positives = 132/468 (28%), Gaps = 55/468 (11%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVL 71
           +   +        +L          L   ++   Q L   +    L++   ++ +L    
Sbjct: 57  IFQGIHNEKPQDKILVKYGNGPLPPLPDFKNEHFQRLSYELAFSALKYQDVLENILIDSG 116

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I  +      L  L+ V +  +          +D     A+  +  R+       +   +
Sbjct: 117 IYPIQSISDELTSLVVVMLYDLQDRKFEARYNIDDDGSIAEVQEVERYLCSFKTKLAAAL 176

Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191
           +R        ++   I+PE  + + +        L      +     D+      E +  
Sbjct: 177 AR-CRIKHDALSIEHILPETIRRQEQRASVLP--LYAWANPLKASLEDIHSSLQKEGFTK 233

Query: 192 KLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDASASIPVQLFGTL 240
             +          L    E ++           SL  F       QD S S+ V     L
Sbjct: 234 VESISNFSGYSYCLDMHCEDVLIFPSFLKEQLLSLELFTNQKLLFQDKSRSLAVHSVKAL 293

Query: 241 NNLSVLDLCAAPGGKTAQLIVSG-------AKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
            N+    L A  G       +S                S  +  +L+    ++     ++
Sbjct: 294 LNMDDDILVAHMGSWLTVAHMSALTNQQTSKVFVCGVKSTAKEAELKGLFAQMECKNIEL 353

Query: 294 IEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRD-------TD 335
           I  D  +  P     +    +L+   CS  G           H D    RD        D
Sbjct: 354 IREDFANIEPTDNKLQKVKVILLLPRCSGLGVSNPIEFILNEHEDAELLRDLSQGSVAED 413

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP--- 392
            +   A  Q + L   + F K    VV+  CS+  +++E VV K L S     +  P   
Sbjct: 414 KLNMLAQQQFEELTHAMQFAKVQA-VVYCTCSVYPEENEVVVNKALTSGAEGTKAQPYKL 472

Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                       +  S   + +  P  +             F   L R
Sbjct: 473 CPPVLPLCCKSEINTSAANFFKQEPSDISNGC---------FIAVLTR 511


>gi|29375559|ref|NP_814713.1| transcription antitermination protein NusB [Enterococcus faecalis
           V583]
 gi|256852630|ref|ZP_05558001.1| transcription antitermination protein NusB [Enterococcus faecalis
           T8]
 gi|39931895|sp|Q836W8|NUSB_ENTFA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|29343020|gb|AAO80783.1| N utilization substance protein B [Enterococcus faecalis V583]
 gi|256711975|gb|EEU27012.1| transcription antitermination protein NusB [Enterococcus faecalis
           T8]
          Length = 154

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 3   SGMNARLVSSHLLS-----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           +    R  +   L        + K+ ++   L  +  +             +  +V    
Sbjct: 11  TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 70

Query: 58  RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                +D V+   L    S+ R       +LR+++ ++LY  DV +   ++ AVE +K+ 
Sbjct: 71  SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 130

Query: 115 KENRHFAKLVNSILRRVSR 133
            ++R     VN +L  V +
Sbjct: 131 SDDRSRK-FVNGVLSNVMK 148


>gi|167946494|ref|ZP_02533568.1| hypothetical protein Epers_08068 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 222

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 12/200 (6%)

Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDL-TVKFDIETWAHKLNAVML 198
           + +    +PEW  +R+E  +       I+     P   + +   + D   +  +L    +
Sbjct: 19  QPSSRYAMPEWLLQRIEQRWPDSWQERIAALNARPPMSLRINCRQVDRADYLERLREQQI 78

Query: 199 PTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
               +         + P  ++ LPGF++G   VQD  A +   L        VLD CAAP
Sbjct: 79  TAEPVPHTESGLTLQRPVDVLELPGFSDGAVSVQDGGAQLAAPLLELQPGQRVLDACAAP 138

Query: 253 GGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFD 308
           GGKT  ++      ++TA+D+  +RL+++  NL RL L AE              ++ +D
Sbjct: 139 GGKTGHMLELADDLRLTAIDLDPQRLQRVAENLQRLGLQAELQAGDAAHPQGRWAERQYD 198

Query: 309 AVLVDAPCSSTGTIRRHPDV 328
            +L+D PCS+TG +RRHP  
Sbjct: 199 RILLDVPCSATGVMRRHPRH 218


>gi|229174859|ref|ZP_04302379.1| N utilization substance protein B [Bacillus cereus MM3]
 gi|228608527|gb|EEK65829.1| N utilization substance protein B [Bacillus cereus MM3]
          Length = 114

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
            + ++V   +     ID  +   L    L R     + +LRV+V ++ Y+ ++     ++
Sbjct: 26  FLESLVVGFVENKEVIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTIN 85

Query: 106 LAVEQAKRDKENRHFAKLVNSILRR 130
            A+E AK    +    + +N +L  
Sbjct: 86  EAIEIAKTF-GDEESRRFINGVLSN 109


>gi|83858229|ref|ZP_00951751.1| transcription antitermination protein NusB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853052|gb|EAP90904.1| transcription antitermination protein NusB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 158

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 9/126 (7%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----DQILVRAIVNVTLRFLPRIDAV 66
              L  +         ++                    D+     +V   +     +D  
Sbjct: 25  VQALYQMETSGSGAKAVVKEFRDHRFGYEDEPGDYVETDEDFFENLVTGIVSIQADVDKR 84

Query: 67  LDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +  VL     L R   +++ +LR    +++   DV    V++  V+ A    E       
Sbjct: 85  ISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTE-PGF 143

Query: 124 VNSILR 129
           VN+ L 
Sbjct: 144 VNATLD 149


>gi|226323208|ref|ZP_03798726.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758]
 gi|225208398|gb|EEG90752.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758]
          Length = 130

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M+     R     +L  +          ++L           +  +  +R  V       
Sbjct: 1   MR-RSKVREHIFKMLFSIGFDAADADEQIELYLEQVEEASEEE--RGYMRKKVKDIAAHE 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             IDA+++         R       +LR++V ++ + D V     ++ AVE AK    + 
Sbjct: 58  EEIDAMINEHTTGWKTGRMNKVDLSVLRLAVYEMKWDDEVPVKVAINEAVELAKNFSGDE 117

Query: 119 HFA 121
             A
Sbjct: 118 GPA 120


>gi|25028292|ref|NP_738346.1| transcription antitermination protein NusB [Corynebacterium
           efficiens YS-314]
 gi|32171659|sp|Q8FT35|NUSB_COREF RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|23493576|dbj|BAC18546.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 188

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 10/173 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +   AR  +  +L     + +  +  + D +   +A   +         AI+N     L 
Sbjct: 13  ARYKARRRAVDILFEAESRDVDPVAIIDDRKTLSNAVDPVVAPVAEYTEAIINGVAVELD 72

Query: 62  RIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            ID +L   +  +  L R     + +LRV+  ++LY  DV     V  AVE A +   ++
Sbjct: 73  TIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVPVTTAVVEAVEIASQYSTDK 132

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGI-----SIIPEWFKERLENFYGKERVL 166
             A  +N+ L  ++ +  EL +R A       S  P    +  E    ++   
Sbjct: 133 AGA-YINATLDNMASKVDELRERAANPGAVSGSDAPVAPWDDSEELPAEDEAE 184


>gi|262196667|ref|YP_003267876.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
 gi|262080014|gb|ACY15983.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
          Length = 150

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 1   MK--SGMNARLVSSHLLSCVMRK--RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK  +   AR  +  +L  +           LL+              D    R+++   
Sbjct: 1   MKVGARRRARSYALQVLYALDLNPLEEPTRALLEYAGRFDLRIDEEAGD--FARSLIEQV 58

Query: 57  LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
              L RID  +     +  + R     + +LR++V ++   D  A   V++ AVE AKR 
Sbjct: 59  YPHLERIDERIQTASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAKRF 118

Query: 115 KENRHFAKLVNSILRRVSRE 134
                 A  VN IL RV + 
Sbjct: 119 GTTESPA-FVNGILDRVDQH 137


>gi|331002443|ref|ZP_08325961.1| transcription antitermination factor NusB [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330410259|gb|EGG89693.1| transcription antitermination factor NusB [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 146

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLL----DLEYGDSAF----------RLLSQRDQIL 48
           +    R     +L  +          +    D  +   +              S  D   
Sbjct: 2   TRHLLREHCFKILLGLDF---YADEEIKVQTDNYFESPSLEDEDDELIHDANFSDGDIEY 58

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDL 106
           +++   + +     ID ++  +     L R     + +LR+++A++ Y  D+     ++ 
Sbjct: 59  IKSKAMLVMDNKSEIDKIISELSQGWKLERIGRVERNILRLAIAEMKYDDDIPVSVAINE 118

Query: 107 AVEQAKRDKENRHFA 121
           AVE AK    +  ++
Sbjct: 119 AVELAKAYGRDESYS 133


>gi|227517900|ref|ZP_03947949.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX0104]
 gi|227555087|ref|ZP_03985134.1| transcription antitermination protein NusB [Enterococcus faecalis
           HH22]
 gi|229546824|ref|ZP_04435549.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX1322]
 gi|229548918|ref|ZP_04437643.1| transcription antitermination protein NusB [Enterococcus faecalis
           ATCC 29200]
 gi|293382527|ref|ZP_06628461.1| transcription antitermination factor NusB [Enterococcus faecalis
           R712]
 gi|293387873|ref|ZP_06632412.1| transcription antitermination factor NusB [Enterococcus faecalis
           S613]
 gi|307268058|ref|ZP_07549446.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4248]
 gi|307271988|ref|ZP_07553255.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0855]
 gi|307275459|ref|ZP_07556601.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2134]
 gi|307278973|ref|ZP_07560032.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0860]
 gi|307289420|ref|ZP_07569374.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0109]
 gi|307290060|ref|ZP_07569984.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0411]
 gi|312900448|ref|ZP_07759755.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0470]
 gi|312904540|ref|ZP_07763698.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0635]
 gi|312906870|ref|ZP_07765867.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 512]
 gi|312952750|ref|ZP_07771612.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0102]
 gi|312978875|ref|ZP_07790601.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 516]
 gi|227074654|gb|EEI12617.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX0104]
 gi|227175755|gb|EEI56727.1| transcription antitermination protein NusB [Enterococcus faecalis
           HH22]
 gi|229305939|gb|EEN71935.1| transcription antitermination protein NusB [Enterococcus faecalis
           ATCC 29200]
 gi|229307989|gb|EEN73976.1| transcription antitermination protein NusB [Enterococcus faecalis
           TX1322]
 gi|291080075|gb|EFE17439.1| transcription antitermination factor NusB [Enterococcus faecalis
           R712]
 gi|291082720|gb|EFE19683.1| transcription antitermination factor NusB [Enterococcus faecalis
           S613]
 gi|306498902|gb|EFM68396.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0411]
 gi|306499675|gb|EFM69038.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0109]
 gi|306504360|gb|EFM73571.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0860]
 gi|306507847|gb|EFM76975.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2134]
 gi|306511335|gb|EFM80338.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0855]
 gi|306515699|gb|EFM84226.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4248]
 gi|310627124|gb|EFQ10407.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 512]
 gi|310629266|gb|EFQ12549.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0102]
 gi|310632053|gb|EFQ15336.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0635]
 gi|311288312|gb|EFQ66868.1| transcription antitermination factor NusB [Enterococcus faecalis
           DAPTO 516]
 gi|311292424|gb|EFQ70980.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0470]
 gi|315026954|gb|EFT38886.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2137]
 gi|315029667|gb|EFT41599.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4000]
 gi|315034207|gb|EFT46139.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0027]
 gi|315144361|gb|EFT88377.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX2141]
 gi|315147929|gb|EFT91945.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX4244]
 gi|315149499|gb|EFT93515.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0012]
 gi|315153054|gb|EFT97070.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0031]
 gi|315156826|gb|EFU00843.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0043]
 gi|315157613|gb|EFU01630.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0312]
 gi|315162959|gb|EFU06976.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0645]
 gi|315165157|gb|EFU09174.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1302]
 gi|315168057|gb|EFU12074.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1341]
 gi|315171915|gb|EFU15932.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1342]
 gi|315173308|gb|EFU17325.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX1346]
 gi|315574278|gb|EFU86469.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0309B]
 gi|315577406|gb|EFU89597.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0630]
 gi|315581567|gb|EFU93758.1| transcription antitermination factor NusB [Enterococcus faecalis
           TX0309A]
 gi|327534564|gb|AEA93398.1| transcription antitermination factor NusB [Enterococcus faecalis
           OG1RF]
          Length = 156

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 3   SGMNARLVSSHLLS-----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           +    R  +   L        + K+ ++   L  +  +             +  +V    
Sbjct: 13  TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 72

Query: 58  RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
                +D V+   L    S+ R       +LR+++ ++LY  DV +   ++ AVE +K+ 
Sbjct: 73  SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 132

Query: 115 KENRHFAKLVNSILRRVSR 133
            ++R     VN +L  V +
Sbjct: 133 SDDRSRK-FVNGVLSNVMK 150


>gi|322500860|emb|CBZ35937.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 409

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           +   N  R+H     I E +      K    +    A   +        D      +   
Sbjct: 160 RGVDNEYRMHHMNLGIAEGEVGSQTEKAPSASSQPLASSRAESGEHSKKDAP----SPSS 215

Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
                 Q KLL  G   ++PGG +V++ CS     +E VV++ L  +    E V 
Sbjct: 216 TSLFALQSKLLDNGYRQLRPGGTLVYATCSYSYVQNEYVVRRFLERANAVNEKVD 270


>gi|186680628|ref|YP_001863824.1| transcription antitermination protein NusB [Nostoc punctiforme PCC
           73102]
 gi|238689253|sp|B2J3F1|NUSB_NOSP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|186463080|gb|ACC78881.1| NusB antitermination factor [Nostoc punctiforme PCC 73102]
          Length = 213

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67
           +  +L   +    +    L           L+ +D   +   + +V         ID +L
Sbjct: 83  ARTMLQEAIACTQTAINQLGTAVDFPELIQLANQDKGVRNYAKELVITVNENRHIIDELL 142

Query: 68  D-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              ++   + R     + +L+++VA++ +L V D   ++ AVE AKR   +    + +N 
Sbjct: 143 STALVDWQVTRLAQLDRDILQIAVAEMKFLGVPDSIAINEAVELAKRYSGDDG-HRFING 201

Query: 127 ILRRVSRE 134
           +LRRV+ +
Sbjct: 202 VLRRVTEQ 209


>gi|89901446|ref|YP_523917.1| NusB antitermination factor [Rhodoferax ferrireducens T118]
 gi|119390807|sp|Q21V17|NUSB_RHOFD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|89346183|gb|ABD70386.1| NusB antitermination factor [Rhodoferax ferrireducens T118]
          Length = 177

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
                AR  +   L   +  + +++  +D    D      S+ D +    ++        
Sbjct: 33  SDRSRAREFALQALYQSLVGKNTVSD-IDAFTRD--LAGFSKADSLHFDTLLQGCTEQAA 89

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +DA+L  +L             ++ +   ++ + LDV    V++  VE AK        
Sbjct: 90  ALDALLLPLLDRKFAEISPIEHSIMWIGAFELQHCLDVPWRVVLNECVELAKEFGGTDGH 149

Query: 121 A 121
            
Sbjct: 150 K 150


>gi|315634386|ref|ZP_07889673.1| transcription termination/antitermination factor NusB
           [Aggregatibacter segnis ATCC 33393]
 gi|315476976|gb|EFU67721.1| transcription termination/antitermination factor NusB
           [Aggregatibacter segnis ATCC 33393]
          Length = 102

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 39  RLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-D 97
           + +   D    R +   T+  +  ++  +   L   L       + +LR++V ++ +  D
Sbjct: 4   QDMKGVDTPYFRKLFRQTVENVEAVERTMQGYLDRGLEELDPIEKAILRLAVYELQFEAD 63

Query: 98  VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           V    V++ A+E AK    +    K +N +L +
Sbjct: 64  VPYKVVINEAIEVAKVFGADES-HKYINGVLDK 95


>gi|312134817|ref|YP_004002155.1| nusb antitermination factor [Caldicellulosiruptor owensensis OL]
 gi|311774868|gb|ADQ04355.1| NusB antitermination factor [Caldicellulosiruptor owensensis OL]
          Length = 134

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 12  SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +L     +  S   +         +        D+  +  ++   ++   RID++++ 
Sbjct: 1   MKILYAYRFEDGSQDIIEFYKKFRELNQDEDFRDIDEEYLEKLLKGVIQNQQRIDSLIEK 60

Query: 70  VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                 L R      +L+RV+V ++L+  DV     +D AV+ +            VN I
Sbjct: 61  YSKDWPLSRLPMVELELMRVAVYELLFEEDVPVSVAIDEAVDLS-NIFGIEKAPSFVNGI 119

Query: 128 LRR 130
           L R
Sbjct: 120 LGR 122


>gi|297466640|ref|XP_612659.4| PREDICTED: NOP2/Sun domain family, member 7 [Bos taurus]
 gi|297475794|ref|XP_002688276.1| PREDICTED: NOP2/Sun domain family, member 7 [Bos taurus]
 gi|296486645|gb|DAA28758.1| NOP2/Sun domain family, member 7 [Bos taurus]
          Length = 721

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/475 (13%), Positives = 138/475 (29%), Gaps = 60/475 (12%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAV 66
           +++++     R   S    L     +         D+   R    +    L++   ++ +
Sbjct: 53  LAANI-FQGTRLEKSPEKALIKYGNEPLPSSTESEDESFQRLSYELAFSALKYQDILETI 111

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           L    I         L  L+ V +            ++    E      E  +      +
Sbjct: 112 LIDSYIFPSTTIPDHLNSLIIVMLYD-FQDRKFQARLLSGNEESIAEVLEVENLLNSFKT 170

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
            L             ++   I+PE  +        +   L +     +       V + +
Sbjct: 171 KLAAALARCRIKHDALSIYHILPETVRN----QELRASTLPLYAWINTCKISPEEVYYTL 226

Query: 187 ET-----------WAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIP 233
           +              +K+ AV      + +        ++++  F +     QD S S+ 
Sbjct: 227 KKNGYNKVKSVLHIDNKVFAVDQHCYDVLIFPSHLKSDLLNIDLFKDYKLIFQDKSRSLA 286

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV-------SGAKVTALDVSKRRLEKLRCNLDRL 286
           V     L N+    L    G       +       +         S+ +   L+    ++
Sbjct: 287 VHSVKALLNMDDDILMVNTGSWYTVAHMSVLTNNNTSKIFVCGVQSQAKDPDLKNLFTKM 346

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTR--- 332
                +I+         K    +    +L+   CS  G           H D    +   
Sbjct: 347 GCKNIEILHETFMKLELKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTDLLKDFS 406

Query: 333 ----DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR--SSPI 386
                 D +   A  Q + L   + F +    +V+  CS+  +++E +V+K L      I
Sbjct: 407 QGGPSEDKLHVLAQQQYEQLAHAMKFTRAQA-IVYCTCSVYPEENEAIVKKALEFQDHEI 465

Query: 387 PVELVPLNSAYWKSIDMAM-ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            V+   L+        +    LS + + R+ P  +          +G F   L R
Sbjct: 466 KVQPYRLSPPVLPLCSLKEIHLSTDKFFRMEPSEI---------TNGCFISVLTR 511


>gi|305681487|ref|ZP_07404294.1| transcription antitermination factor NusB [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659692|gb|EFM49192.1| transcription antitermination factor NusB [Corynebacterium
           matruchotii ATCC 14266]
          Length = 312

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
             +L     + +  +  + D          L          I+      L RID V+   
Sbjct: 34  VDVLYEAEARDVDPVAIVEDRINLARVDITLVAPIAAYTSEIIAGVAEELNRIDDVIAEY 93

Query: 71  LI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           L     L R     + +LRV+V ++++  DV     +  AVE A +          +N++
Sbjct: 94  LAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSG-ASAPAYINAV 152

Query: 128 LRR 130
           L  
Sbjct: 153 LDS 155


>gi|307150111|ref|YP_003885495.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
 gi|306980339|gb|ADN12220.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
          Length = 212

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     I+    R    I+  L   ++   L R     + +LR++VA++L+L+V     +
Sbjct: 117 REYAVEIIGTVFRRQKEIEQQLATGMVDWQLSRLPKIDRDILRIAVAEMLFLEVPQKVAI 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
           + AVE AKR  +   + + +N +LRRV+ +
Sbjct: 177 NEAVEIAKRYSDEEGY-RFINGVLRRVTEQ 205


>gi|33594361|ref|NP_882005.1| transcription antitermination protein NusB [Bordetella pertussis
           Tohama I]
 gi|33595544|ref|NP_883187.1| transcription antitermination protein NusB [Bordetella
           parapertussis 12822]
 gi|33599942|ref|NP_887502.1| transcription antitermination protein NusB [Bordetella
           bronchiseptica RB50]
 gi|39931820|sp|Q7VTN3|NUSB_BORPE RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931833|sp|Q7W142|NUSB_BORPA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|39931858|sp|Q7WNT2|NUSB_BORBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33564436|emb|CAE43747.1| N utilization substance protein B [Bordetella pertussis Tohama I]
 gi|33565622|emb|CAE40268.1| N utilization substance protein B [Bordetella parapertussis]
 gi|33567539|emb|CAE31452.1| N utilization substance protein B [Bordetella bronchiseptica RB50]
 gi|332383772|gb|AEE68619.1| transcription antitermination protein NusB [Bordetella pertussis
           CS]
          Length = 154

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 12  SHLLSCVMRKRISLTC---LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
              +   + +    T     +D    D+     S+ D    + +++  LR  P +     
Sbjct: 19  LQGVYAWLLRGGEGTQDAGEIDAHLRDAE--DFSEADAQWFKTLLHGVLREAPVLRERFL 76

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
             +   L         +L +   ++++  +V     ++ AVE AK       F 
Sbjct: 77  PYIDRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFK 130


>gi|304384736|ref|ZP_07367082.1| transcription antitermination factor NusB [Pediococcus acidilactici
           DSM 20284]
 gi|304328930|gb|EFL96150.1| transcription antitermination factor NusB [Pediococcus acidilactici
           DSM 20284]
          Length = 127

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 8   RLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQI--LVRAIVNVTLRFLPRID 64
           R  +  ++        S+       E          + D     +  +V      +  I+
Sbjct: 2   RESAFKMIFA-----QSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSIN 56

Query: 65  AVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
             +   L    ++ R     + +L++   +I + +V +   ++ A+E AK+   +    K
Sbjct: 57  ETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTEVPNSVAINEALELAKKY-TDEKARK 115

Query: 123 LVNSILRR 130
            +N +L  
Sbjct: 116 FINGVLSN 123


>gi|255655206|ref|ZP_05400615.1| N utilization substance protein B [Clostridium difficile QCD-23m63]
 gi|296451191|ref|ZP_06892932.1| transcription antitermination factor NusB [Clostridium difficile
           NAP08]
 gi|296880457|ref|ZP_06904419.1| transcription antitermination factor NusB [Clostridium difficile
           NAP07]
 gi|296260012|gb|EFH06866.1| transcription antitermination factor NusB [Clostridium difficile
           NAP08]
 gi|296428411|gb|EFH14296.1| transcription antitermination factor NusB [Clostridium difficile
           NAP07]
          Length = 168

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 32/151 (21%)

Query: 1   MKSGMN----ARLVSSHLLSCVMRKRI---SLTCLLDLEYGDSAFRLLSQ---------- 43
           MK         R     L+  +   +    +L   +D    D++  ++++          
Sbjct: 1   MKKDRAQKSTTREYIMKLIYQININKEDFETLEDRVDNFLKDNSEHIINRYKELALQYSK 60

Query: 44  --------------RDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRV 88
                          D+  +  +         +ID +++    + ++ R       +LR+
Sbjct: 61  NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 120

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           SV +ILYLD  +   ++ AVE AK   +++ 
Sbjct: 121 SVCEILYLDTPNKVSINEAVELAKIYCDDKS 151


>gi|126643397|ref|YP_001086381.1| transcription antitermination protein NusB [Acinetobacter baumannii
           ATCC 17978]
          Length = 122

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83
           S   + ++E    A   + + D      ++   +     +DA+L  VL   +        
Sbjct: 2   SHNPVHEIEARTRAENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDREIDALDGVEL 61

Query: 84  QLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             LR+   ++  +L++    V+D A+E AK         K +N +L R
Sbjct: 62  ATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLDR 108


>gi|42519423|ref|NP_965353.1| hypothetical protein LJ1551 [Lactobacillus johnsonii NCC 533]
 gi|227890288|ref|ZP_04008093.1| transcription antitermination protein NusB [Lactobacillus johnsonii
           ATCC 33200]
 gi|268319198|ref|YP_003292854.1| transcription antitermination factor NusB [Lactobacillus johnsonii
           FI9785]
 gi|41583711|gb|AAS09319.1| hypothetical protein LJ_1551 [Lactobacillus johnsonii NCC 533]
 gi|227849102|gb|EEJ59188.1| transcription antitermination protein NusB [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397573|emb|CAX66587.1| transcription antitermination factor NusB [Lactobacillus johnsonii
           FI9785]
 gi|329667052|gb|AEB93000.1| hypothetical protein LJP_0669 [Lactobacillus johnsonii DPC 6026]
          Length = 133

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLPRIDAV 66
           R ++   +   +  +  LT     E    A + L  +D       +VN  L     +D  
Sbjct: 7   RRIAMQAIY--LANQGKLTDA--EEVCQKALKALELKDFPDYSTELVNGVLANKEALDEQ 62

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123
           L   L     L R       +L V++ ++    V    A ++ A+        ++   K 
Sbjct: 63  LSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIDPVAALNEALNLCDEF-SSKESKKF 121

Query: 124 VNSILRRV 131
           +N +L   
Sbjct: 122 INGLLANF 129


>gi|227496173|ref|ZP_03926479.1| transcription antitermination protein NusB [Actinomyces
           urogenitalis DSM 15434]
 gi|226834287|gb|EEH66670.1| transcription antitermination protein NusB [Actinomyces
           urogenitalis DSM 15434]
          Length = 155

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 2   KSGMNARLVSSHLLSCVMRKR--------ISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53
            +   AR  +  +L    ++          +L  L       SA    +       R I+
Sbjct: 12  TARTKARRRAIEILFEADQRGLLRAGEAAENLRALAAERAVHSANHTEAP---AYTREIL 68

Query: 54  NVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111
                 L +ID  ++      SL R     + + RV+  +I+Y  DV     +D A   A
Sbjct: 69  TGVADHLEQIDEHIETYSQGWSLTRMPAVDRAIARVTTWEIVYNDDVDVPVALDEAQTLA 128

Query: 112 KRDKENRH 119
           K    +  
Sbjct: 129 KMLSTDDS 136


>gi|239612586|gb|EEQ89573.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces dermatitidis
           ER-3]
          Length = 555

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 32/179 (17%)

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           R  +    +      +   KK+    L   PC+         +     D D ++K +  Q
Sbjct: 343 RDDIPRLALPSSHNPNPRSKKMKRTALAPVPCTHADPAADEEEPTPAIDHDRLIKLSNLQ 402

Query: 345 RKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLR--------------------- 382
            +++    SF  P    V +S CS+  Q++E VV + L+                     
Sbjct: 403 TRIIEHAFSF--PAARRVTYSTCSIHAQENEVVVSRALKSPVAQRRGWRILSRSEQVEGL 460

Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +     +         S  + +  +  E  +R  P+          G  GFF     R
Sbjct: 461 RNWKYRGIKSEKPGDGASESLDLTGTELEACLRCWPND-------EEGTGGFFVAGFVR 512


>gi|295657461|ref|XP_002789299.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226283969|gb|EEH39535.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 555

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 50/178 (28%), Gaps = 30/178 (16%)

Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           R  +    +  M    Y  KK    V                      D D ++K +  Q
Sbjct: 340 RDDVPRLALPTMSGPSYWSKKRKRTVRAQMDGVCFALGDPEDQSPINVDYDRLLKLSNLQ 399

Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKS 400
            +++    +F      V +S CS+  Q++E VV +VL+           L          
Sbjct: 400 TRIIEHAFNFPAAT-RVTYSTCSIHAQENEVVVSRVLKSPVARRRGWRILSRSEQVQGLR 458

Query: 401 IDMAMALSPEG------------------WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 + P+G                   +R  P+          G  GFF     R
Sbjct: 459 NWKHRGIQPDGPGDGEQGSWHLTEVERDACLRCWPND-------EQGTGGFFVAGFVR 509


>gi|222528993|ref|YP_002572875.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725]
 gi|222455840|gb|ACM60102.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725]
          Length = 134

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 12  SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +L     +  +   +         +        D+  +  ++   ++   +ID +++ 
Sbjct: 1   MKILYAYRFENNTQDIIEFYKKFRELNQDEDFKDIDEKYLERLLKGVIQNQQKIDNIIEK 60

Query: 70  VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                 L R      +L+R++V ++L+  +V     +D AV+ A            VN I
Sbjct: 61  YSKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119

Query: 128 LRR 130
           L R
Sbjct: 120 LGR 122


>gi|254974736|ref|ZP_05271208.1| N utilization substance protein B [Clostridium difficile QCD-66c26]
 gi|255092125|ref|ZP_05321603.1| N utilization substance protein B [Clostridium difficile CIP
           107932]
 gi|255100216|ref|ZP_05329193.1| N utilization substance protein B [Clostridium difficile QCD-63q42]
 gi|255306105|ref|ZP_05350277.1| N utilization substance protein B [Clostridium difficile ATCC
           43255]
 gi|255313862|ref|ZP_05355445.1| N utilization substance protein B [Clostridium difficile QCD-76w55]
 gi|255516543|ref|ZP_05384219.1| N utilization substance protein B [Clostridium difficile QCD-97b34]
 gi|255649643|ref|ZP_05396545.1| N utilization substance protein B [Clostridium difficile QCD-37x79]
 gi|260682807|ref|YP_003214092.1| N utilization substance protein B [Clostridium difficile CD196]
 gi|260686405|ref|YP_003217538.1| N utilization substance protein B [Clostridium difficile R20291]
 gi|306519760|ref|ZP_07406107.1| N utilization substance protein B [Clostridium difficile QCD-32g58]
 gi|260208970|emb|CBA62018.1| N utilization substance protein B [Clostridium difficile CD196]
 gi|260212421|emb|CBE03285.1| N utilization substance protein B [Clostridium difficile R20291]
          Length = 168

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 32/151 (21%)

Query: 1   MKSGMN----ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAFRLLSQ---------- 43
           MK         R     L+  +   +     L   +D    D++  ++++          
Sbjct: 1   MKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSK 60

Query: 44  --------------RDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRV 88
                          D+  +  +         +ID +++    + ++ R       +LR+
Sbjct: 61  NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 120

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           SV +ILYLD  +   ++ AVE AK   +++ 
Sbjct: 121 SVCEILYLDTPNKVSINEAVELAKIYCDDKS 151


>gi|240013567|ref|ZP_04720480.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           DGI18]
 gi|240016006|ref|ZP_04722546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           FA6140]
 gi|240120636|ref|ZP_04733598.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
           PID24-1]
          Length = 161

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK+    +R ++   +   +  R +   +       S F    + D+ L   +   T   
Sbjct: 21  MKTTRRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 77

Query: 60  LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
                  +  +L           + +L  +  ++  + +     +++ A+E  K      
Sbjct: 78  AADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 137

Query: 119 HFA 121
              
Sbjct: 138 GHK 140


>gi|157828080|ref|YP_001494322.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165932780|ref|YP_001649569.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. Iowa]
 gi|166215712|sp|A8GQY9|NUSB_RICRS RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|189035898|sp|B0BWD7|NUSB_RICRO RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|157800561|gb|ABV75814.1| transcription antitermination protein NusB [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165907867|gb|ABY72163.1| N utilization substance protein B [Rickettsia rickettsii str. Iowa]
          Length = 156

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++    +      +L     +++   L +  +        + +V + 
Sbjct: 12  ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKLV 71

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
              + ++D ++D  L            L+ LLRVS+ ++L+        V++   + A  
Sbjct: 72  FENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131

Query: 114 DKENRHFAKLVNSILRRVSREK 135
              N H    VNS+L ++++E 
Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152


>gi|227495454|ref|ZP_03925770.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831001|gb|EEH63384.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 180

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 10/127 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRIS-----LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
            S   AR  +   +    ++  +     +  +L+     +A +            I+   
Sbjct: 7   SSRTRARKRAIDTIFEADQRGRAESAAGINLMLEERKEITAAQTPLPE---YSIEIIEGV 63

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
              L  ID +LD      +  R     + +LRV+  +I++ + V D   +D AV   ++ 
Sbjct: 64  RDHLIEIDDLLDTHTTGRTFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAVRITRKI 123

Query: 115 KENRHFA 121
             +   A
Sbjct: 124 STDDSPA 130


>gi|291550246|emb|CBL26508.1| transcription antitermination factor NusB [Ruminococcus torques
           L2-14]
          Length = 139

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 8   RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R     +L  +       +   ++  +  S     + +D+  ++      L     ID +
Sbjct: 7   REHIFKMLFQIEFNDPQEMPEQIEYYF--STLEDAADKDKEYIKRKYAAVLEKTEEIDEL 64

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           ++         R       +LR++V ++ + D V     ++ AVE  K    +      +
Sbjct: 65  INANAKGWKTTRMNKVDLSILRLAVYEMKWDDEVPVGVAINEAVELTKTFSSDE-APSFI 123

Query: 125 NSILRR 130
           N +L +
Sbjct: 124 NGVLGK 129


>gi|220909702|ref|YP_002485013.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           7425]
 gi|254772629|sp|B8HYJ8|NUSB_CYAP4 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|219866313|gb|ACL46652.1| NusB antitermination factor [Cyanothece sp. PCC 7425]
          Length = 209

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 7   ARLVSSHLLS----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +R + +  ++     V R  + L   L      +  + +    +     I+   L     
Sbjct: 76  SRAMVTEAITLAETAVNRLGMVLD--LPEFVQLANQQQV----RDFSLDILKQVLTHRTA 129

Query: 63  IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           ID +L+  ++     R     + +LR++VA+ILYL       ++ AVE AKR  +   + 
Sbjct: 130 IDHLLETALVDWQFNRLAQIDRNILRIAVAEILYLKTPTQVTINEAVELAKRYSDEDGY- 188

Query: 122 KLVNSILRRVSRE 134
           + VN +LRR    
Sbjct: 189 RFVNGVLRRTIPH 201


>gi|126698797|ref|YP_001087694.1| N utilization substance protein B [Clostridium difficile 630]
 gi|119390758|sp|Q18B61|NUSB_CLOD6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|115250234|emb|CAJ68055.1| N utilization substance protein B homolog (Protein NusB)
           [Clostridium difficile]
          Length = 169

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 32/151 (21%)

Query: 1   MKSGMN----ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAFRLLSQ---------- 43
           MK         R     L+  +   +     L   +D    D++  ++++          
Sbjct: 2   MKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSK 61

Query: 44  --------------RDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRV 88
                          D+  +  +         +ID +++    + ++ R       +LR+
Sbjct: 62  NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 121

Query: 89  SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           SV +ILYLD  +   ++ AVE AK   +++ 
Sbjct: 122 SVCEILYLDTPNKVSINEAVELAKIYCDDKS 152


>gi|163790200|ref|ZP_02184633.1| transcription antitermination protein NusB [Carnobacterium sp. AT7]
 gi|159874475|gb|EDP68546.1| transcription antitermination protein NusB [Carnobacterium sp. AT7]
          Length = 147

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 1   MK-SGMNARLVSSHLLSCV-MRKRISLTCLLDLEYGDSAFRLLSQRDQ----ILVRAIVN 54
           M  +  + R  +   L  + + + +S    +      S   L+ + +       +  +V+
Sbjct: 1   MSLTRRDIREKALQSLFQLSVNEDLSKEEAMQHALI-SENDLIDEVETVLVPSYLDMLVS 59

Query: 55  VTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAK 112
             +     ID  +   L + SL R   +   ++RV++ +++Y  DV D   ++ A+E  K
Sbjct: 60  GVMEKQDEIDEKIKTHLENWSLNRLAKTDLIIIRVAIFEMMYVSDVPDRVALNEALEITK 119

Query: 113 RDKENRHFA 121
           +  + +   
Sbjct: 120 KYSDEKSRK 128


>gi|226295065|gb|EEH50485.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 555

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 30/124 (24%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLN 394
           K +  Q++++    +F      V +S CS+  Q++E VV +VL+           L    
Sbjct: 394 KLSNLQKRIIEHAFNFPAAT-RVTYSTCSIHAQENEVVVSRVLKSPVARRRGWRILSRSE 452

Query: 395 SAYWKSIDMAMALSPEG------------------WIRITPDMLEKIDGVSSGMDGFFAV 436
                       + P+G                   +R  P+          G  GFF  
Sbjct: 453 QVQGLRNWKHRGIHPDGSGDGEQGSWHLTEAERDACLRCWPND-------EQGTGGFFVA 505

Query: 437 ALRR 440
              R
Sbjct: 506 GFIR 509


>gi|225677768|gb|EEH16052.1| NOL1/NOP2/Sun domain family protein [Paracoccidioides brasiliensis
           Pb03]
          Length = 555

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 30/124 (24%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLN 394
           K +  Q++++    +F      V +S CS+  Q++E VV +VL+           L    
Sbjct: 394 KLSNLQKRIIEHAFNFPAAT-RVTYSTCSIHAQENEVVVSRVLKSPVARRRGWRILSRSE 452

Query: 395 SAYWKSIDMAMALSPEG------------------WIRITPDMLEKIDGVSSGMDGFFAV 436
                       + P+G                   +R  P+          G  GFF  
Sbjct: 453 QVQGLRNWKHRGIHPDGSGDGEQGSWHLTEAERDACLRCWPND-------EQGTGGFFVA 505

Query: 437 ALRR 440
              R
Sbjct: 506 GFIR 509


>gi|312127939|ref|YP_003992813.1| nusb antitermination factor [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777958|gb|ADQ07444.1| NusB antitermination factor [Caldicellulosiruptor hydrothermalis
           108]
          Length = 134

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 12  SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +L     +  +   +         +        D+  +  ++   ++   RID +++ 
Sbjct: 1   MKILYAYRFEDDTQDIIEFYKKFRELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEK 60

Query: 70  VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                 L R      +L+R++V ++L+  +V     +D AV+ A            VN I
Sbjct: 61  YSKDWPLSRLPMVELELMRMAVYELLFEEEVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119

Query: 128 LRR 130
           L R
Sbjct: 120 LGR 122


>gi|313104313|sp|Q8NE18|NSUN7_HUMAN RecName: Full=Putative methyltransferase NSUN7; AltName:
           Full=NOL1/NOP2/Sun domain family member 7
          Length = 718

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L    DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + +      ++     + L     I+++ D   +++      +G F   L R
Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507


>gi|194384370|dbj|BAG64958.1| unnamed protein product [Homo sapiens]
          Length = 771

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L    DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + +      ++     + L     I+++ D   +++      +G F   L R
Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507


>gi|187828635|ref|NP_078953.3| putative methyltransferase NSUN7 [Homo sapiens]
          Length = 718

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L    DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + +      ++     + L     I+++ D   +++      +G F   L R
Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507


>gi|320450059|ref|YP_004202155.1| transcription antitermination factor NusB [Thermus scotoductus
           SA-01]
 gi|320150228|gb|ADW21606.1| transcription antitermination factor NusB [Thermus scotoductus
           SA-01]
          Length = 151

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYG------DSAFRLLSQRDQILVRAIVNVTLRFL 60
           AR ++   L    +  + L               DS    L Q      R ++       
Sbjct: 5   ARELAMRALFAHTQGGVDLEEAFRHALEEMGGEEDSYGDSLDQEGVAFARRLLEGYKAHA 64

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             +D VL   +      +   +   +LR++  ++LY       ++++AV+ A R     H
Sbjct: 65  EEVDQVLRDTVEGWDFAQMSKTDLTVLRLAAYEMLYEPTPFAPLIEVAVKIANRY-GGEH 123

Query: 120 FAKLVNSILRRVSREKI 136
               VN +L R+ R   
Sbjct: 124 SGAFVNGVLGRLYRRIQ 140


>gi|328479786|gb|EGF48904.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 145

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57
           M + M +R    H +     + +           ++ +  +  +D      + A+V   L
Sbjct: 17  MTNKMESR----HAIREAAFRALFALATNPEADKNAVYAEVLPKDTEVPSYLTALVEGVL 72

Query: 58  RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQA 111
                +DA L   L     L R       +LR+ + +I Y + + + A ++ A+  A
Sbjct: 73  ANQAALDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLA 129


>gi|281491193|ref|YP_003353173.1| transcription antitermination factor [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374934|gb|ADA64452.1| Transcription antitermination factor [Lactococcus lactis subsp.
           lactis KF147]
          Length = 323

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAV 66
           L+       S    L     ++   +L+   D+            +V+  L     ++A 
Sbjct: 199 LAQAENNAQS---QLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEAN 255

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +   L    S  R     Q +L+VS  +ILY +  D   V+ AVE +K D  +   ++ +
Sbjct: 256 ISKYLAKTWSFSRLTLVEQAILQVSSYEILYTETPDVVAVNEAVELSK-DFSDEKSSRFI 314

Query: 125 NSILRRV 131
           N +L   
Sbjct: 315 NGVLTNF 321


>gi|119613378|gb|EAW92972.1| hypothetical protein FLJ14001, isoform CRA_c [Homo sapiens]
          Length = 718

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L    DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDVLMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + +      ++     + L     I+++ D   +++      +G F   L R
Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507


>gi|154282293|ref|XP_001541942.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150410122|gb|EDN05510.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 556

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/527 (14%), Positives = 151/527 (28%), Gaps = 119/527 (22%)

Query: 11  SSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++ +L        S  + +   +    A +         V A++  T ++   +  V++ 
Sbjct: 7   AASVLYRDSGSGGSFKSRVYKSKLRSPARQ---------VYALITETAKWDILLKEVVEN 57

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
                +  K   L  +L V    +    +   +  +  +  A    ++R  A+ V S + 
Sbjct: 58  ANFLPVEPKLTPLLSILLVHDFLLTKKGIVAPS--NHPLRLAIERHKSRIKAEFVKSRVH 115

Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189
           R      EL   +          ++ +       R+  +  +    L    +    + + 
Sbjct: 116 RQCASIEELEALVKRQKNA-SGREDSIFGPPRWARINNVITSLDEQLKTTFSAYKLVHSL 174

Query: 190 AHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQ----LFGT 239
           +  +                 ++           + +G+  +QD ++  P          
Sbjct: 175 SELVATTPDSLYQDPHIPDLVAVSQDAQLASSAAYKKGMIILQDKASCFPAYLLLGSDAA 234

Query: 240 LNNLSVLDLCAAPGGKTAQ------------------LIVSGAKVTALDVSKRRLEKLRC 281
                +LD CAAPG KT                           + + DVS  R   L+ 
Sbjct: 235 KWKGDLLDACAAPGNKTTHLASLLCSSSKSHFGDRIHSTQDKFTIFSCDVSPNRSRILQR 294

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDA-------VLVDAPCSSTGTIRR---------- 324
            +         +  +   D+      D        +L+D  CS TG + R          
Sbjct: 295 MVAIAGAE-TMVSVLPGQDFLALSPDDKRFQDVTGILLDPSCSGTGIVGRDDMPCLALPS 353

Query: 325 ----HPDVLWTR------------------------DTDDIVKSACFQRKLLLQGISFVK 356
               H   +  +                        D   + K +  Q +++     F  
Sbjct: 354 LQDPHDRGMKRKRHAPTPLPTLGRPAASEPQNTTDIDPGRLTKLSNLQTRIVEHAFKF-- 411

Query: 357 PGGIVV-FSNCSLDKQDSEEVVQKVLR------------SSPIPVELVP-------LNSA 396
           P    V +S CS+  Q++E V+ +VL+            S    VE +         +  
Sbjct: 412 PNATRVTYSTCSIHVQENEVVIARVLKSPVAQRRGWRIVSRNEQVEGLRKWKYRGITHGE 471

Query: 397 YWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                     L+    EG +R  P+  E          GFF     R
Sbjct: 472 SGDGGGEIWDLTETEREGCLRCWPNDKEC-------TGGFFVAGFVR 511


>gi|326406239|gb|ADZ63310.1| transcription antitermination factor [Lactococcus lactis subsp.
           lactis CV56]
          Length = 323

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAV 66
           L+       S    L     ++   +L+   D+            +V+  L     ++A 
Sbjct: 199 LAQAENNAQS---QLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEAN 255

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +   L    S  R     Q +L+VS  +ILY +  D   V+ AVE +K D  +   ++ +
Sbjct: 256 ISKYLTKTWSFSRLTLVEQAILQVSSYEILYTETPDVVAVNEAVELSK-DFSDEKSSRFI 314

Query: 125 NSILRRV 131
           N +L   
Sbjct: 315 NGVLTNF 321


>gi|15672676|ref|NP_266850.1| hypothetical protein L92686 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723603|gb|AAK04792.1|AE006302_10 transcription termination protein NusB [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 323

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAV 66
           L+       S    L     ++   +L+   D+            +V+  L     ++A 
Sbjct: 199 LAQAENNAQS---QLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEAN 255

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +   L    S  R     Q +L+VS  +ILY +  D   V+ AVE +K D  +   ++ +
Sbjct: 256 ISKYLTKTWSFSRLTLVEQAILQVSSYEILYTETPDVVAVNEAVELSK-DFSDEKSSRFI 314

Query: 125 NSILRRV 131
           N +L   
Sbjct: 315 NGVLTNF 321


>gi|39932003|sp|Q9CHN4|NUSB_LACLA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 192

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAV 66
           L+       S    L     ++   +L+   D+            +V+  L     ++A 
Sbjct: 68  LAQAENNAQS---QLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEAN 124

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           +   L    S  R     Q +L+VS  +ILY +  D   V+ AVE +K D  +   ++ +
Sbjct: 125 ISKYLTKTWSFSRLTLVEQAILQVSSYEILYTETPDVVAVNEAVELSK-DFSDEKSSRFI 183

Query: 125 NSILRRV 131
           N +L   
Sbjct: 184 NGVLTNF 190


>gi|301607853|ref|XP_002933499.1| PREDICTED: putative methyltransferase NSUN7-like [Xenopus
           (Silurana) tropicalis]
          Length = 692

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/467 (14%), Positives = 144/467 (30%), Gaps = 60/467 (12%)

Query: 22  RISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL---DFVLISSL 75
           +     ++     DS   L S RD   Q     +   TL++   ++ +L    F     L
Sbjct: 36  KKPPDRIVVKYGNDSGKSLSSLRDEKYQRWAYELAFNTLKYQDLLETILLDSGFYHSQPL 95

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
           P     +  L+ V +            +        +  +  +        +   ++R +
Sbjct: 96  PD---EMTSLVMVMLYDFQDRKFQPRCLAHTVETIEEVTEVEKLLCSYKTRLSAALARSR 152

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
           I+     +   I+PE  +++          L            ++      E +    + 
Sbjct: 153 IKHAIP-SIDFILPEGVRKQ--EQRSSTVPLYAWVNTAKTSTTEVCDGLKNEGFTKTDSP 209

Query: 196 VMLPTGGIRLKELPESI-----------VSLPGFAEGVWWVQDASASIPVQLFGTLNN-- 242
           V L      + +  + +            +L  F      +QD +  + V     L N  
Sbjct: 210 VDLVGYQYYMDKQCQDVLVFPQYLKDKLSNLELFIHYRLVLQDKAHILSVHSVRALMNLD 269

Query: 243 LSVLDLCAAPGGKTAQL-----IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-- 295
             ++      G   A +       +         S+ R   L      +      +++  
Sbjct: 270 DDIIVAAPCSGYILAHMSVLTNQNACRIFVCGIKSEARERALLELFADMGCKNIKLLKES 329

Query: 296 -MDAFDYCPKKLFDAVLVDAPCSSTG--------TIRRHPDVLWTRD-------TDDIVK 339
             D     P+     V++  P SS           + +H D    +D       TD +  
Sbjct: 330 FTDLDPSDPRLQKAKVILLLPQSSGSGVSDPVQFVLNQHGDTSLLQDFSQGSVGTDKLNA 389

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP--LNSAY 397
            +  Q   L   ++F K    +V+  CS+  +++E+V+ + L   P   +++   + S  
Sbjct: 390 LSKQQVTELTHAMTFNKVQA-LVYCTCSVYHEENEDVINQALGQKPESNKILTYRIGSPV 448

Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                  + L  + +I++ P             +GFF   L +   P
Sbjct: 449 IPLSSSELTLLSDKFIKVQPSET---------TNGFFLAVLTKEPDP 486


>gi|297626339|ref|YP_003688102.1| Transcription antitermination factor (N utilization substance
           protein B homolog) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922104|emb|CBL56672.1| Transcription antitermination factor (N utilization substance
           protein B homolog) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 208

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   AR  +  +L     +       +         +      +   R I++       
Sbjct: 36  STRTKARKQALDVLFQADLR----NEAVHRTMARRTEQG-EPALRDFTRQILDGYSEHGH 90

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
            I+  +D  L    +L R     + L R++V ++ +  +     +  A+E A
Sbjct: 91  EINEHIDRALTGDWTLERMSRVDRNLARIAVWELDFTTIDLKVAISEAMELA 142


>gi|148654081|ref|YP_001281174.1| NusB antitermination factor [Psychrobacter sp. PRwf-1]
 gi|148573165|gb|ABQ95224.1| NusB antitermination factor [Psychrobacter sp. PRwf-1]
          Length = 252

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 46/136 (33%), Gaps = 12/136 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55
            AR  +   L   +        +   E+  +    ++ R +               ++  
Sbjct: 39  KARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHTLMRE 98

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114
               +  ++A++   L  ++ +       +L +   ++   L +    V+D A++     
Sbjct: 99  IPEQITDLEALIAQHLDRAIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKL-NTH 157

Query: 115 KENRHFAKLVNSILRR 130
                  KL+N+++ +
Sbjct: 158 FGATDAHKLINAVMDK 173


>gi|10432785|dbj|BAB13847.1| unnamed protein product [Homo sapiens]
          Length = 186

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
               +   +       +D VLVD PC++          ++       +       Q +LL
Sbjct: 35  VTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLL 94

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-M 403
             G+   KPGG VV+S CSL    +E VVQ  +        I V++  L       +D  
Sbjct: 95  AAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTF 154

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
               S +    + P+++             +   +RRL 
Sbjct: 155 CFFSSCQVGELVVPNLMANFGP-------MYFCKMRRLT 186


>gi|116629407|ref|YP_814579.1| transcription termination factor [Lactobacillus gasseri ATCC 33323]
 gi|311110942|ref|ZP_07712339.1| transcription antitermination factor NusB [Lactobacillus gasseri
           MV-22]
 gi|116094989|gb|ABJ60141.1| Transcription termination factor [Lactobacillus gasseri ATCC 33323]
 gi|311066096|gb|EFQ46436.1| transcription antitermination factor NusB [Lactobacillus gasseri
           MV-22]
          Length = 133

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 9/128 (7%)

Query: 8   RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R ++   +    +    +   +          +            IVN  L     +D  
Sbjct: 7   RRIAMQAIYLANQGNLTNAEEVCQKALKALELKSFPD----YSTEIVNGVLANKKALDEQ 62

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123
           L   L     L R       +L V++ ++    V    A ++ A+        ++   K 
Sbjct: 63  LSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEF-SSKESKKF 121

Query: 124 VNSILRRV 131
           VN +L   
Sbjct: 122 VNGLLANF 129


>gi|313894565|ref|ZP_07828129.1| transcription antitermination factor NusB [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313440961|gb|EFR59389.1| transcription antitermination factor NusB [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 134

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           ++   AR  +  +L                 +   A       D+    +I+   +    
Sbjct: 5   RNRREARQYAFQMLYANEFHNDQNDVQFPEGHIQKAM------DKAYANSIIQGVIATAE 58

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENR 118
           +IDA L        +       + +LR++V ++            ++ A++ AK    + 
Sbjct: 59  KIDADLQPFCKSRKVANLDKVDRAILRIAVWEMTNEVEPLEPSIAINEAIQLAKEFGSDA 118

Query: 119 HFA 121
            + 
Sbjct: 119 SYK 121


>gi|317498987|ref|ZP_07957269.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893736|gb|EFV15936.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 171

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMR-KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     R     +L CV   ++      ++L +       ++++ Q  +       +  
Sbjct: 35  MK-RSEVREHIFRILFCVEFCEKEEFEDQVELYF--HGHENINEKTQKEITEKTENLIEH 91

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
           L  ID  +       +L R   +   +LR++  +IL  + V     ++ AVE AK+   N
Sbjct: 92  LDEIDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYC-N 150

Query: 118 RHFAKLVNSILRRVSREK 135
              A  +N +L ++ ++ 
Sbjct: 151 EKAAPFINGVLSKIGQDM 168


>gi|294883902|ref|XP_002771097.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239874335|gb|EER02913.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 198

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEK 422
            CS+  ++ E V+  +L++  + V        +      +   +     +  P      +
Sbjct: 14  TCSMAVEEDEMVIDAILKARNVRVVAFDDVVNFG-----SEGFTSFRGKQFHPSLKHSRR 68

Query: 423 IDGVSSGMDGFFAVALRR 440
                  MDGFF   L++
Sbjct: 69  FFPHVHNMDGFFVCKLQK 86


>gi|310791572|gb|EFQ27099.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001]
          Length = 580

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIPVELVPLNSAY 397
           A FQ  LLL  + F      + +S CS+  +++E VV K L    +     +++P     
Sbjct: 391 AGFQLTLLLHAMKF-PSAKKISYSTCSIHAEENEGVVIKALASEVARERGWKILPREKQV 449

Query: 398 WKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               +  +   PE   G   +    +    G   G+ GFF  A  R
Sbjct: 450 RGMREWPVRGLPEAAGGDKAVAEACIRTYKGDGHGVMGFFVAAFVR 495


>gi|167766576|ref|ZP_02438629.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
 gi|167711699|gb|EDS22278.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
          Length = 167

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMR-KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     R     +L CV   ++      ++L +       ++++ Q  +       +  
Sbjct: 31  MK-RSEVREHIFRILFCVEFCEKEEFEDQVELYF--HGHENINEKTQKEITEKTENLIEH 87

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
           L  ID  +       +L R   +   +LR++  +IL  + V     ++ AVE AK+   N
Sbjct: 88  LDEIDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYC-N 146

Query: 118 RHFAKLVNSILRRVSREK 135
              A  +N +L ++ ++ 
Sbjct: 147 EKAAPFINGVLSKIGQDM 164


>gi|288918217|ref|ZP_06412572.1| NusB antitermination factor [Frankia sp. EUN1f]
 gi|288350387|gb|EFC84609.1| NusB antitermination factor [Frankia sp. EUN1f]
          Length = 146

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVD 105
               +V   +  L  ID  +        + R     + +LR++V ++ +  DV D  V+D
Sbjct: 24  YASDLVEGVVAHLGDIDRHIASHAQGWAIDRMPPVDRNILRIAVLELFWRTDVPDGVVID 83

Query: 106 LAVEQAKRDKENRHFA 121
            AV  AK     R  A
Sbjct: 84  EAVRLAKTISTERSPA 99


>gi|298490714|ref|YP_003720891.1| NusB antitermination factor ['Nostoc azollae' 0708]
 gi|298232632|gb|ADI63768.1| NusB antitermination factor ['Nostoc azollae' 0708]
          Length = 213

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 37  AFRLLSQRDQILVRAIVNVTLRFLPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILY 95
                 +  +   + I+         ID ++ D ++   + R     + +L+++ A++ +
Sbjct: 112 QLANQDKEVRNYAKEIIITVNENRNVIDQIISDALVDWQVTRLAQIDRDILQIAAAEMKF 171

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136
           + V     ++ AVE AKR   +    + +N +LRRV+ +K 
Sbjct: 172 MGVPASIAINEAVELAKRYSGDEG-HRFINGVLRRVTEQKQ 211


>gi|114593754|ref|XP_001147079.1| PREDICTED: putative methyltransferase NSUN7 isoform 2 [Pan
           troglodytes]
          Length = 718

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 71/472 (15%), Positives = 139/472 (29%), Gaps = 63/472 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L    DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L  V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLFIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHETFINIDSKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + +      ++     + L     I+++ D   +++      +G F   L R
Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507


>gi|182413526|ref|YP_001818592.1| NusB antitermination factor [Opitutus terrae PB90-1]
 gi|177840740|gb|ACB74992.1| NusB antitermination factor [Opitutus terrae PB90-1]
          Length = 147

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 8   RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLPRIDA 65
           R+ +   L      R  +L   L + + +        RD       +++  +     IDA
Sbjct: 13  RVAALQYLFAWSMNRPRNLAEDLRVFFENMEQ----PRDHYAFGEELIHGVIEHSDDIDA 68

Query: 66  VLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123
            +  +  +    R       +LR+++ +IL+  D+     ++ A++ +K+   N    + 
Sbjct: 69  RIKGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDLSKQF-SNADAKRF 127

Query: 124 VNSILRR 130
           +N IL R
Sbjct: 128 INGILDR 134


>gi|326773300|ref|ZP_08232583.1| transcription antitermination factor NusB [Actinomyces viscosus
           C505]
 gi|326636530|gb|EGE37433.1| transcription antitermination factor NusB [Actinomyces viscosus
           C505]
          Length = 163

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ----ILVRAIVNVTL 57
            +   AR  +  +L    ++ +  +   +     +  R +S  +          I++   
Sbjct: 21  TARTKARRRAIEILFEADQRGMLSSEGSEELRSFAQLRAVSSANHTEAPAYTGEILDGLC 80

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
             L  +D  +       +L R     + + RV+  +I+Y D V     VD A+  ++   
Sbjct: 81  DHLGDVDETIQTYAQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAMTLSRMLS 140

Query: 116 ENRH 119
            +  
Sbjct: 141 TDES 144


>gi|332077717|gb|EGI88178.1| transcription antitermination factor NusB [Streptococcus pneumoniae
           GA41301]
          Length = 121

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
             +  +V+        +D  +   L    ++ R     + LLR+ V +I   D      V
Sbjct: 30  AFLIDLVSDVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAV 89

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRV 131
           + A+E AK D  ++  A+ +N +L + 
Sbjct: 90  NEAIELAK-DFSDQKSARFINGLLSQF 115


>gi|282850892|ref|ZP_06260266.1| transcription antitermination factor NusB [Lactobacillus gasseri
           224-1]
 gi|282557844|gb|EFB63432.1| transcription antitermination factor NusB [Lactobacillus gasseri
           224-1]
          Length = 133

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 9/133 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    R ++   +    +    +   +          +            IVN  L    
Sbjct: 2   THHEMRRIAMQAIYLANQGNLTNAEEVCQKALKALELKSFPD----YSTEIVNGVLANKK 57

Query: 62  RIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENR 118
            +D  L   L     L R       +L V++ ++    V    A ++ A+        ++
Sbjct: 58  ALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEF-SSK 116

Query: 119 HFAKLVNSILRRV 131
              K VN +L   
Sbjct: 117 ESKKFVNGLLANF 129


>gi|145295740|ref|YP_001138561.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum R]
 gi|140845660|dbj|BAF54659.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 212

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 5/166 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA-IVNVTLRFLP 61
           S   AR+ +  +L     + +    ++D  +  +                I+N     L 
Sbjct: 13  SRYKARMRAVDILFEAESRDVDPVAIIDDRHKLARDTNPIVAPVAEYTETIINGVAVELD 72

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
            +D  L   +    +L R     + +LRV+  +++Y  DV     +  AVE A     ++
Sbjct: 73  TLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNTDVPVTTAIVEAVEIASEYSGDK 132

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
             A  +N+ L  ++ +   L +R A    +     E L++      
Sbjct: 133 SSA-YINATLDAMASKVETLRERAANPEAVLAEASESLDDAPVAPW 177


>gi|153810477|ref|ZP_01963145.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174]
 gi|149833656|gb|EDM88737.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174]
          Length = 180

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 7/118 (5%)

Query: 8   RLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           R     LL       +      +            L ++DQ  ++      L  L  ID 
Sbjct: 7   REHIFKLLFMTQFNSENEMSDQV---SMYFDTLGELEEKDQEAIQNKYQHILEHLDEIDQ 63

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +L+         R        LR++V ++ +  +V     ++ AVE AK        +
Sbjct: 64  ILNEYSRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFGGEDSGS 121


>gi|315604170|ref|ZP_07879236.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313876|gb|EFU61927.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 208

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSA-----FRLLSQRDQILVRAIVNV 55
            S   AR  ++ ++    ++ +      L     +          L +        I+  
Sbjct: 8   TSRTKARKRAADVVYEADQRGMGSNPDALRDLLRERRVITAAQTPLPE----FSLRIIGG 63

Query: 56  TLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
               L RID+++        L R       ++RV+V ++L  D V+   V+D AV   + 
Sbjct: 64  VADNLRRIDSLISAHARVPGLDRIAAVDLAVMRVAVWEMLENDEVSPIIVIDEAVSIVRS 123

Query: 114 DKENRHFA 121
              +   A
Sbjct: 124 ISTDTSPA 131


>gi|145230151|ref|XP_001389384.1| NOL1/NOP2/sun domain protein [Aspergillus niger CBS 513.88]
 gi|134055499|emb|CAK44014.1| unnamed protein product [Aspergillus niger]
          Length = 572

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 41/160 (25%)

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
            P  S      +   +     + ++K +  Q +++   +SF      V +S CS+   ++
Sbjct: 385 PPTESPSATDENDVPVTGMTEERLIKLSNLQTRIVEHALSFPAAT-RVTYSTCSIHLLEN 443

Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------------------------ 409
           E VV ++L S         +     + + M   +                          
Sbjct: 444 EAVVSRILASEVAKTRGWRVLRRDEQPVGMRKWVHRGIREERGVGGGSAAATTTVDGVGA 503

Query: 410 ---------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                    EG +R  P           G  GFF     R
Sbjct: 504 EVTLSDEELEGCLRCWPGD-------EEGTGGFFVAGFVR 536


>gi|294898664|ref|XP_002776327.1| williams-beuren syndrome critical region protein, putative
           [Perkinsus marinus ATCC 50983]
 gi|239883237|gb|EER08143.1| williams-beuren syndrome critical region protein, putative
           [Perkinsus marinus ATCC 50983]
          Length = 444

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 97/296 (32%), Gaps = 53/296 (17%)

Query: 185 DIETWAHKLNAVMLPTGGIRL--------KELPESIVSLPGFAEGVWWVQDASASIPVQL 236
             E    +L +  + +    L            ++++  P   +    +QD  + +    
Sbjct: 134 SRENAIEQLGSAGIKSKADPLIPDVITVDPWNSKALIESPLVRDFTLVLQDRGSCLSAHS 193

Query: 237 ----FGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRLEKLRCNLDRL 286
                     ++V+D CA+PG KT  +            + A+++  +R + L   L + 
Sbjct: 194 LLAGVQPGEKITVVDACASPGSKTIHMLQLMRYRKIEGTMVAMELDPKRAKVLLDRLAKA 253

Query: 287 HL----------------------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
                                    + ++   D   Y   ++   V +D  CS +G +  
Sbjct: 254 GFLPRDGTRTSEEVAHLSAAHSPDISVEVRVGDFIKYSSPEVTH-VNLDPSCSGSGLVDV 312

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           H D   +     + K + FQ ++L   ++       V +S CS+  +++ EVV+K L   
Sbjct: 313 HADSE-SVGAQRLRKLSSFQCRMLDHALTAFPAVQTVCYSTCSIKNEENGEVVKKALNR- 370

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                L       W     +    P    R       ++        GF+   L +
Sbjct: 371 -----LQSGYRREWPFEVGSCWKEPTHGAR-----DVQVRPEVDHCRGFYLCKLVK 416


>gi|167750987|ref|ZP_02423114.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702]
 gi|167656166|gb|EDS00296.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702]
 gi|291557466|emb|CBL34583.1| transcription antitermination factor NusB [Eubacterium siraeum
           V10Sc8a]
          Length = 143

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 52/143 (36%), Gaps = 8/143 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R  +  +L  +     +L  +L+           SQ  +     +          
Sbjct: 7   TRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQSVK-----LAKGVAEHEDE 61

Query: 63  IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           ++ +++       L R  Y    ++++++ ++ Y   V D   ++ A+E AK    ++  
Sbjct: 62  LNGIIESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEY-ADKTD 120

Query: 121 AKLVNSILRRVSREKIELLQRIA 143
            + +N +L    ++     Q  A
Sbjct: 121 VRFINGVLNSYYKDNPTKEQPDA 143


>gi|58584450|ref|YP_198023.1| transcription termination factor, NusB [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418766|gb|AAW70781.1| Transcription termination factor, NusB [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 160

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 3   SGMNARLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVNV 55
               AR ++  +    +       T  L+     +    L+        D   +  ++  
Sbjct: 13  KRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYK 72

Query: 56  TLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            +R     D ++++ L    SL R       +LRV+V ++   D     V++     A  
Sbjct: 73  VIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANCDTPAPVVINEYTNIASD 132

Query: 114 DKENRHFAKLVNSILRR 130
             +       +N +L +
Sbjct: 133 LLDKPSEIGFINGLLDK 149


>gi|312622738|ref|YP_004024351.1| nusb antitermination factor [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203205|gb|ADQ46532.1| NusB antitermination factor [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 134

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 12  SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +L     +  +   +         +        D+  +  ++   ++   RID +++ 
Sbjct: 1   MKILYAYRFEDDTQDIIEFYKRFRELNQDEDFKDIDEKYLEKLLKGVIQNQQRIDNLIEK 60

Query: 70  VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                 L R      +L+R++V ++L+  +V     +D AV+ A            VN I
Sbjct: 61  YSKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119

Query: 128 LRR 130
           L R
Sbjct: 120 LGR 122


>gi|295093397|emb|CBK82488.1| transcription antitermination factor NusB [Coprococcus sp. ART55/1]
          Length = 159

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 14/141 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRIS-----LTCLLDLEYGDSAFRL------LSQRDQILVRA 51
           +  + R     ++  +           L    D E              +S  D+  +  
Sbjct: 2   TRRDIRDRIFKIVFTLEFNDAEGMQDQLDFAFDPEMPGDEEDDPLLYGIVSNEDRDYITT 61

Query: 52  IVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109
            V   +     ID ++  +     LPR       +LR+ V ++ Y + + +   ++ AVE
Sbjct: 62  KVKNIISKKAEIDEIISQISEGWKLPRIGKEELAILRLGVYEVKYDESIPEKVAINEAVE 121

Query: 110 QAKRDKENRHFAKLVNSILRR 130
            AK+   +   +K VN++L +
Sbjct: 122 LAKKYC-DASASKFVNALLAK 141


>gi|166365064|ref|YP_001657337.1| transcription antitermination protein NusB [Microcystis aeruginosa
           NIES-843]
 gi|254772647|sp|B0JGZ3|NUSB_MICAN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166087437|dbj|BAG02145.1| N utilization substance protein B homolog [Microcystis aeruginosa
           NIES-843]
          Length = 217

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 46  QILVRAIVNVTLRFLPRID-AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++    R    I+  +   ++   L R     + +L+++VA++LYLD+     +
Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALVDWQLHRLPRIDRDILQIAVAEMLYLDLPQKVAI 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130
           + A+E AKR  ++  + + +N +LRR
Sbjct: 177 NEAIELAKRYSDDEGY-RFINGVLRR 201


>gi|297292482|ref|XP_001095999.2| PREDICTED: putative methyltransferase NSUN7 isoform 1 [Macaca
           mulatta]
          Length = 717

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 70/472 (14%), Positives = 139/472 (29%), Gaps = 63/472 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +         DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSFSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEESISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKM 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILRETFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       
Sbjct: 403 QGGISVDKLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVVKKALE-----F 456

Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           + +      ++     + L     I+++ D   +++      +G F   L R
Sbjct: 457 QDLGNKVQLYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507


>gi|156051912|ref|XP_001591917.1| hypothetical protein SS1G_07363 [Sclerotinia sclerotiorum 1980]
 gi|154705141|gb|EDO04880.1| hypothetical protein SS1G_07363 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 627

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 341 ACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
           A FQ +LLL    +  P    + +S CS+  +++E VVQK L S         +     +
Sbjct: 407 AEFQLELLLHAFKY--PAARKITYSTCSIHAEENESVVQKALASDIAKERGWKILRRDNQ 464

Query: 400 SIDMAMAL------SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              M          + +G   +    +    G      GFF     R
Sbjct: 465 IRGMREWPVRGSVEACDGDEVVAEGCIRANKGDEHATMGFFLAGFVR 511


>gi|297571422|ref|YP_003697196.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931769|gb|ADH92577.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM
           20595]
          Length = 159

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 8   RLVSSHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           R  +  +L     +         L+     S  +   Q+     + IV+    +   +D+
Sbjct: 22  RQRALDVLYEADVRGAEHDLASLLEERSQLSPSQQPIQK---YGQLIVSTYAEWADDVDS 78

Query: 66  VLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
           +++      +L R     + LLR+   +++YLDV    VV       +    ++
Sbjct: 79  MIEAASPQWALARMSVVDRNLLRIGATELMYLDVPTAIVVKEITALVRDFSTDK 132


>gi|225377103|ref|ZP_03754324.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM
           16841]
 gi|225211008|gb|EEG93362.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM
           16841]
          Length = 130

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R     +L  V      +  + +           S++D+  +    +  +  +  IDA +
Sbjct: 7   REQVFKMLFRVEFHN--VEDMPEQMNMFEEVEECSEKDKEYISNKFHNIVEKIDEIDAAI 64

Query: 68  DFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           + V       R       L+R++V ++ Y  D+     ++ AVE AK+   +   A
Sbjct: 65  NEVSEGWKTRRMGKVDLTLIRLAVYEMKYEDDIPVKVAINEAVELAKQYGTDESPA 120


>gi|254423258|ref|ZP_05036976.1| transcription antitermination factor NusB, putative [Synechococcus
           sp. PCC 7335]
 gi|196190747|gb|EDX85711.1| transcription antitermination factor NusB, putative [Synechococcus
           sp. PCC 7335]
          Length = 281

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 29  LDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQL 85
           +           L  RD  +     ++   + +   IDA L+  +   S+ R     + +
Sbjct: 173 IKTTLEPEQLVALLSRDDIRGYACELLGNWISYQKAIDAQLNEAMEKWSIRRLARVDRDI 232

Query: 86  LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           LR+++ +I+Y+DV     +D A+E AKR  +   + + +N +LRR
Sbjct: 233 LRLAMIEIVYMDVPKKVAIDEAIEMAKRYSDEDGY-RFINGVLRR 276


>gi|198282617|ref|YP_002218938.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667110|ref|YP_002424808.1| transcription antitermination factor NusB [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247138|gb|ACH82731.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519323|gb|ACK79909.1| transcription antitermination factor NusB [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 147

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 8/150 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK      AR  +   L           C        S    L   D    +++      
Sbjct: 1   MKISRRRLARQAAVQALYQWQMN--PGHCAEIELQFTSDPERLQGADVAFFKSLWQGVCA 58

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
            +  +D  +   +             + +LR++  ++  Y       +++ A+E  K   
Sbjct: 59  AISELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINEAIELDKDFG 118

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGI 145
             +   + VN++L ++++         AG 
Sbjct: 119 GEQG-HRFVNAVLDKLAQRWRSAEMLQAGR 147


>gi|22477203|gb|AAH36568.1| NOL1/NOP2/Sun domain family, member 7 [Homo sapiens]
 gi|119613379|gb|EAW92973.1| hypothetical protein FLJ14001, isoform CRA_d [Homo sapiens]
 gi|312152008|gb|ADQ32516.1| NOL1/NOP2/Sun domain family, member 7 [synthetic construct]
          Length = 475

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 121/414 (29%), Gaps = 57/414 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L    DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDVLMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L 
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE 455


>gi|229828872|ref|ZP_04454941.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
           14600]
 gi|229792035|gb|EEP28149.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
           14600]
          Length = 152

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 21/137 (15%)

Query: 4   GMNARLVSSHLLSCVMRKRISLT---CLLDLEYGDSAFRLLSQ----RDQILVRAI---- 52
               R  +  +L  V+            L+L + D     +       DQ  V  +    
Sbjct: 8   RRQIRETAFRILF-VLNF-CPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVIRLDQAS 65

Query: 53  -------VNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
                         LP ID +++       L R       LLR++V ++ + ++     +
Sbjct: 66  WPEITAKCLGAAGHLPEIDRIIEESSEGWKLSRLTKVDLTLLRLAVYEMKFENLPSGIAI 125

Query: 105 DLAVEQAKRDKENRHFA 121
           + AVE AKR   ++  A
Sbjct: 126 NEAVELAKRYGTDKSPA 142


>gi|302874807|ref|YP_003843440.1| NusB antitermination factor [Clostridium cellulovorans 743B]
 gi|307690576|ref|ZP_07633022.1| transcription antitermination protein NusB [Clostridium
           cellulovorans 743B]
 gi|302577664|gb|ADL51676.1| NusB antitermination factor [Clostridium cellulovorans 743B]
          Length = 134

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLE--YGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           +    R ++  L   +M ++I    +++      D     L   D   V  I++      
Sbjct: 2   NRRKTREIAIKLTYSLMIQQIDYKTVIENFKEVEDKEDEDLKDVDFTFVETILSGISENK 61

Query: 61  PRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118
              + ++   ++   L R       +L V++ +I    D+     ++ AVE AK+  +++
Sbjct: 62  SNYEELVSQNLIGWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIAKKYSDDK 121

Query: 119 HFAKLVNSILRR 130
                +NSIL +
Sbjct: 122 -APNFINSILDK 132


>gi|221195846|ref|ZP_03568899.1| transcription antitermination factor NusB [Atopobium rimae ATCC
           49626]
 gi|221184320|gb|EEE16714.1| transcription antitermination factor NusB [Atopobium rimae ATCC
           49626]
          Length = 161

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 8/147 (5%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL    +   ++  +L  EY  S    L          +   T      +
Sbjct: 8   RTLARSQALQLLFQAEQTNRTVEEVLQGEYVLSEG-PLDP----YAEKLACGTDGIRDDL 62

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           D +L+      S+ R     + LL++S+ ++L   +V     ++  +E +     +    
Sbjct: 63  DMILNAYSHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELSHAYCGDES-P 121

Query: 122 KLVNSILRRVSREKIELLQRIAGISII 148
           + +N IL RV+ +  E +        +
Sbjct: 122 RFINGILGRVAADIAEGMDVYEHSRCV 148


>gi|218441932|ref|YP_002380261.1| transcription antitermination protein NusB [Cyanothece sp. PCC
           7424]
 gi|254772630|sp|B7KFR8|NUSB_CYAP7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|218174660|gb|ACK73393.1| NusB antitermination factor [Cyanothece sp. PCC 7424]
          Length = 212

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     I+    R    I+  L  V+    L R     + +LR++VA++++L+V     +
Sbjct: 117 REYALEIIQTVYRRQTEIEQELATVMVDWQLNRLPKIDRDILRIAVAEMIFLEVPQKVAI 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130
           + AVE AKR  +   + + +N +LRR
Sbjct: 177 NEAVEIAKRYSDEEGY-RFINGVLRR 201


>gi|124514784|gb|EAY56296.1| transcription antitermination factor (NusB) [Leptospirillum
           rubarum]
          Length = 168

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 12/132 (9%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR-FL 60
                AR+     L             L                  L R  +   +R   
Sbjct: 19  SPFHKARIEVLQSLFA----GEY----LPGGPPPFTLTSTLPSQARLFRDRLGGAIREHR 70

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID V+       +L R     + +LR+ + +IL+  +V     VD ++E A +  E  
Sbjct: 71  EEIDTVISRFSVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTVDESLELAHQFSEPE 130

Query: 119 HFAKLVNSILRR 130
              + +N IL R
Sbjct: 131 -AVRFINGILHR 141


>gi|206602422|gb|EDZ38903.1| Transcription antitermination factor (NusB) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 168

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 12/152 (7%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR-FL 60
                AR+     L             L                  L R  +  T+R   
Sbjct: 19  SPFHKARIEVLQSLFA----GEY----LPGGPPPFTLTSTLPSQARLFRDRLGGTIREHR 70

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  +       SL R     + +LR+ + +IL+  +V     +D ++E A +  E  
Sbjct: 71  AEIDDTISRFSVDWSLDRMGRVDRNILRMGICEILFEPEVPFRVTIDESLELAHQFSEPE 130

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
              + +N IL R+  E        +     P+
Sbjct: 131 -AVRFINGILHRIGTELAPAKAYASQEDGSPQ 161


>gi|87200933|ref|YP_498190.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM
           12444]
 gi|119390792|sp|Q2G467|NUSB_NOVAD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|87136614|gb|ABD27356.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM
           12444]
          Length = 148

 Score = 63.8 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 8/114 (7%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFLPRIDAVLDFV 70
                ++  L  LLD  +       +        D      +V         ID +L   
Sbjct: 21  YQADMEQTPLHLLLDEFHQHRLGAEIEDVEYAKADVAFFDDVVKGVDARRDEIDGLLSAR 80

Query: 71  LISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
           L     LPR   ++ Q+LR    +++   DV    V+   V+ A    E R   
Sbjct: 81  LAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAK 134


>gi|315122231|ref|YP_004062720.1| transcription antitermination protein NusB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495633|gb|ADR52232.1| transcription antitermination protein NusB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 170

 Score = 63.8 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGD--------SAFRLLSQRDQILVRAIVNVTLR 58
           AR+ +   L  +     SL  ++                  + SQ D      I++  ++
Sbjct: 19  ARISAVQALYQIDIVGCSLVDVISEYEMHRFCADKDIDEDNIYSQVDLEWFHTIMHGVVK 78

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
               +D+++   L    S  R    L  +LR  V +++    V    ++   V  A    
Sbjct: 79  NKELVDSLISSCLTEKWSFSRLDLILCAILRAGVFELIECHSVPVRVIISEYVCIAHDFL 138

Query: 116 ENRHFAKLVNSILRR 130
                 K VN++L +
Sbjct: 139 YGDE-PKFVNAVLDK 152


>gi|328950344|ref|YP_004367679.1| NusB antitermination factor [Marinithermus hydrothermalis DSM
           14884]
 gi|328450668|gb|AEB11569.1| NusB antitermination factor [Marinithermus hydrothermalis DSM
           14884]
          Length = 152

 Score = 63.8 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 9/135 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYG-------DSAFRLLSQRDQILVRAIVNVT 56
              AR ++  +L       + L                     +L        R +V   
Sbjct: 2   RRKARELAFKVLFEHTLGAVPLEEAWRHATEGLVLEDDAPYGDVLDVEGLTFARRLVEGY 61

Query: 57  LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
           +     +D  L+  +   S  +   +   +LR++  ++LY       ++++AV+ AK+  
Sbjct: 62  VAQAEAVDRALEETIEGWSFGQMARTDLTVLRLAAYEMLYEPTPYAPLIEVAVKIAKKY- 120

Query: 116 ENRHFAKLVNSILRR 130
                 + VN +L R
Sbjct: 121 GGEDSGRFVNGVLGR 135


>gi|118595243|ref|ZP_01552590.1| transcription antitermination protein NusB [Methylophilales
           bacterium HTCC2181]
 gi|118441021|gb|EAV47648.1| transcription antitermination protein NusB [Methylophilales
           bacterium HTCC2181]
          Length = 155

 Score = 63.8 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 5/138 (3%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            +   +R +    +   +  +  +  +      D  F      D+ +  +IV        
Sbjct: 16  NNRRKSRELVMKSIYRGIVNQFDINQIKKDIREDPDFVR---SDESMYLSIVEGVHNNFD 72

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
            +   +   L  S          +L  S+ ++ + LDV    V++ A+E AK       F
Sbjct: 73  SLKEEIKTYLDRSYDELSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGF 132

Query: 121 AKLVNSILRRVSREKIEL 138
              +N IL + ++   + 
Sbjct: 133 K-FINGILNKAAQHNRKN 149


>gi|300122180|emb|CBK22754.2| unnamed protein product [Blastocystis hominis]
          Length = 244

 Score = 63.8 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 26/193 (13%)

Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252
           L + +      R       + SLP        +Q+  + I  ++       ++LD CAAP
Sbjct: 53  LESGLAIDQIHRSSFDLPPLESLP----NDLLMQNFPSLITSRILDPQPGEAILDCCAAP 108

Query: 253 GGK---TAQLIVSGAKVTALDVSKRR-LEKLRCNLDRLHLYAEDIIEMDAFDY------- 301
           G K      L+     V  +D S+++ ++ L     +    +  I  +D   +       
Sbjct: 109 GNKWSHLCMLMQDKGLVLGMDRSRKKAIDNLLAIKQKFGYQSLQIRYLDMTKHLLLAGII 168

Query: 302 --------CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                    P+++FD VL+D PCS+ G     P +L     +D++    +QR+ +   + 
Sbjct: 169 AGSAKLPGYPREIFDRVLLDPPCSALGL---RPRLLHEVTMNDLMGYRNYQRQFIEVAVQ 225

Query: 354 FVKPGGIVVFSNC 366
            ++ GG +V+S C
Sbjct: 226 LLRVGGTLVYSTC 238


>gi|119390814|sp|Q68XK6|NUSB_RICTY RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
          Length = 154

 Score = 63.8 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 7   ARLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLS-------QRDQILVRAIVNVTLR 58
           AR+ +   L   +++    +  ++           +               + +V     
Sbjct: 12  ARIAAVQALYQNILQNNYDMYDIMQNILACYHSNSIDLPKNFKISLSISHFKMLVKSVFE 71

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
            + ++D ++D  L            L+ LLRVS+ ++L+        V++   + A  D 
Sbjct: 72  NINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKVVINEYTDIA-NDL 130

Query: 116 ENRHFAKLVNSILRRVSREKI 136
            N H    VNSIL ++++E  
Sbjct: 131 LNEHEIGFVNSILDKIAQENN 151


>gi|51473361|ref|YP_067118.1| transcription antitermination protein NusB [Rickettsia typhi str.
           Wilmington]
 gi|51459673|gb|AAU03636.1| transcription termination protein NusB (N utilization substance
           protein B) [Rickettsia typhi str. Wilmington]
          Length = 173

 Score = 63.8 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 7   ARLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLS-------QRDQILVRAIVNVTLR 58
           AR+ +   L   +++    +  ++           +               + +V     
Sbjct: 31  ARIAAVQALYQNILQNNYDMYDIMQNILACYHSNSIDLPKNFKISLSISHFKMLVKSVFE 90

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
            + ++D ++D  L            L+ LLRVS+ ++L+        V++   + A  D 
Sbjct: 91  NINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKVVINEYTDIA-NDL 149

Query: 116 ENRHFAKLVNSILRRVSREKI 136
            N H    VNSIL ++++E  
Sbjct: 150 LNEHEIGFVNSILDKIAQENN 170


>gi|111224614|ref|YP_715408.1| antitermination factor NusB [Frankia alni ACN14a]
 gi|111152146|emb|CAJ63876.1| Antitermination factor NusB [Frankia alni ACN14a]
          Length = 124

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
               +V   +     I+  +       +L R     + +LR++V ++L+  DV    V+D
Sbjct: 24  YAEGLVRGVVEHWREINERIGRHAEGWTLERMPPVDRNILRIAVLELLWRPDVPPRVVID 83

Query: 106 LAVEQAKRDKENRHFA 121
            AVE AK    +R  +
Sbjct: 84  EAVELAKNLSTDRSPS 99


>gi|284929125|ref|YP_003421647.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
 gi|284809584|gb|ADB95289.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
          Length = 216

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFLPRIDAV 66
             +  +L+  +         L           L+ +D  Q     I++   R    +D  
Sbjct: 78  ESAKTMLAEALELTQGAINCLAGAIEFPEIIQLAGQDDVQKYAIEIIHSICRKKKELDNQ 137

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L+ VL    L R     Q +LR++VA+IL L++ +   ++ AVE AKR  ++  + + +N
Sbjct: 138 LETVLKDWQLRRLAKIDQDILRIAVAEILLLNIPEKVAINEAVELAKRYSDDDGY-RFIN 196

Query: 126 SILRRVSRE 134
            +LRR    
Sbjct: 197 GVLRRFVDH 205


>gi|114593758|ref|XP_001146944.1| PREDICTED: putative methyltransferase NSUN7 isoform 1 [Pan
           troglodytes]
          Length = 475

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 120/414 (28%), Gaps = 57/414 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L    DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L  V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLFIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHETFINIDSKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L 
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE 455


>gi|289549038|ref|YP_003474026.1| NusB antitermination factor [Thermocrinis albus DSM 14484]
 gi|289182655|gb|ADC89899.1| NusB antitermination factor [Thermocrinis albus DSM 14484]
          Length = 138

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M     AR  +  +L     K      L +        +   +  +  VR +V   +   
Sbjct: 1   MIYKPKAREDAFLILYQWEMKGEDPFALAEEYIRMKNIKYSER--RRYVRKMVRTFMENW 58

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVA-DYAVVDLAVEQAKRDKENR 118
             +D +L  ++    L R  Y  + +LRV++ ++++L V      +   V+   +    +
Sbjct: 59  KEVDKILGQMVEDWDLDRLGYVERNILRVALTELMFLKVKNPKQAIFDYVKLTLKYAG-K 117

Query: 119 HFAKLVNSILRRV 131
             A+ VN +L R 
Sbjct: 118 TPARFVNGVLGRF 130


>gi|238852556|ref|ZP_04642966.1| transcription antitermination factor NusB [Lactobacillus gasseri
           202-4]
 gi|238834702|gb|EEQ26929.1| transcription antitermination factor NusB [Lactobacillus gasseri
           202-4]
          Length = 133

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 9/128 (7%)

Query: 8   RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R ++   +    +        +          +            IVN  L     +D  
Sbjct: 7   RRIAMQAIYLANQGNLTDAEEVCQKALKALELKSFPD----YSTEIVNGVLANKKVLDEQ 62

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123
           L   L     L R       +L V++ ++    V    A ++ A+        ++   K 
Sbjct: 63  LSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEF-SSKESKKF 121

Query: 124 VNSILRRV 131
           +N +L   
Sbjct: 122 INGLLANF 129


>gi|322698408|gb|EFY90178.1| NOL1/NOP2/sun domain protein, putative [Metarhizium acridum CQMa
           102]
          Length = 587

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 341 ACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
           A FQ  +LL    F  P    V +S CS+  +++E+VV   L+S         +     +
Sbjct: 396 AGFQLTILLHAFRF--PSARKVTYSTCSIHSEENEDVVMAALKSDVAKERGWRILRRNDQ 453

Query: 400 SIDMAMAL------SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              M          +  G   +    +        G+ GFF     R
Sbjct: 454 VTGMKDWPVRGSTEACNGDEEVAQGCIRSYKDDGHGIMGFFVAGFVR 500


>gi|312880056|ref|ZP_07739856.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260]
 gi|310783347|gb|EFQ23745.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260]
          Length = 156

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 2   KSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           +    +R ++  L   +  +   S+  +L                +    A+V+   R  
Sbjct: 8   QKRRRSREIALQLGYEMDVRERLSVEDVLAAF----PLEEEDPEIRDYACALVSALDRHK 63

Query: 61  PRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118
             ID +L + ++     R     +  +R+++ + ++   V     +  AVE AK      
Sbjct: 64  GAIDELLREQLVGWRPERMVAVDRAAIRLALLEGVFEKLVPLAVAISEAVELAKTF-GTE 122

Query: 119 HFAKLVNSILRR 130
              + VN +L R
Sbjct: 123 DSGRFVNGVLGR 134


>gi|262202262|ref|YP_003273470.1| transcription antitermination factor NusB [Gordonia bronchialis DSM
           43247]
 gi|262085609|gb|ACY21577.1| transcription antitermination factor NusB [Gordonia bronchialis DSM
           43247]
          Length = 163

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 5/126 (3%)

Query: 1   MK---SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
           MK   +   AR  +  +L     K++S   L+                      ++    
Sbjct: 1   MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDESVGAIHDYTARVIEGLA 60

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115
               +ID+V+   L   +LPR     + +LR++  ++    DV    +VD AVE AK   
Sbjct: 61  DDQEQIDSVISSHLREWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDEAVELAKELS 120

Query: 116 ENRHFA 121
            +   A
Sbjct: 121 TDDSPA 126


>gi|19552830|ref|NP_600832.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390501|ref|YP_225903.1| transcription antitermination protein NusB [Corynebacterium
           glutamicum ATCC 13032]
 gi|24638069|sp|Q8NQ33|NUSB_CORGL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|21324387|dbj|BAB99011.1| Transcription termination factor [Corynebacterium glutamicum ATCC
           13032]
 gi|41325838|emb|CAF21627.1| Transcription termination factor [Corynebacterium glutamicum ATCC
           13032]
          Length = 227

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 5/166 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA-IVNVTLRFLP 61
           S   AR+ +  +L     + +    ++D  +  +                I+N     L 
Sbjct: 13  SRYKARMRAVDILFEAESRDVDPVAIIDDRHKLARDTNPIVAPVAEYTETIINGVAVELD 72

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
            +D  L   +    +L R     + +LRV+  +++Y  DV     +  AVE A     ++
Sbjct: 73  TLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVPVTTAIVEAVEIASEYSGDK 132

Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
             A  +N+ L  ++ +   L +R A    +     E L++      
Sbjct: 133 SSA-YINATLDAMASKVETLRERAANPEAVLAEASESLDDAPVAPW 177


>gi|325265401|ref|ZP_08132125.1| transcription antitermination factor NusB [Clostridium sp. D5]
 gi|324029402|gb|EGB90693.1| transcription antitermination factor NusB [Clostridium sp. D5]
          Length = 132

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 8   RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R     +L  +       +   L L + +      ++ D+  +       ++ +P IDA+
Sbjct: 7   REHIFKMLFQIEFNEMEDMPEHLALYFEN--LSSATEEDKEYITKKFEAIVKKVPEIDAI 64

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           L+         R       +LR++  ++ +  DV +   ++ AVE AKR       +
Sbjct: 65  LNEKTTGWKTTRMSKVDLTILRLATYEMKWDEDVPEGVAINEAVELAKRFSGEEGPS 121


>gi|322499712|emb|CBZ34786.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 708

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D         FDAVL+D PC+  G   R   +   +    I +SA +QRKL    I  ++
Sbjct: 512 DGSAASHTDSFDAVLIDPPCTGMGL--RPKLMPHAQSIASIQRSADYQRKLFDSCIRHIR 569

Query: 357 --PG--GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             P   G++V+S C+   +++E  V   L + P         +A     D++        
Sbjct: 570 GSPASPGVIVYSTCTTTLEENEANVLHFLCTYPSVRLARARTAAQRALCDLSAV------ 623

Query: 413 IRITPDMLEKIDGVSSGMDG 432
                    +  G   G DG
Sbjct: 624 ---------RSYGAQHGTDG 634


>gi|182417973|ref|ZP_02949281.1| transcription antitermination factor NusB [Clostridium butyricum
           5521]
 gi|237668086|ref|ZP_04528070.1| transcription antitermination factor NusB [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378144|gb|EDT75679.1| transcription antitermination factor NusB [Clostridium butyricum
           5521]
 gi|237656434|gb|EEP53990.1| transcription antitermination factor NusB [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 131

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + +R  +  L   +   + ++   ++    +     + + D   ++  +       
Sbjct: 1   MNRKL-SREKAMELFFGMTCSKDTVEEAVETFIDNYEG-DIKELDLTYIKKALIGIENNK 58

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118
             ID  +   L +  + R       +LR++  +IL+  +V     ++ A+E  ++  + +
Sbjct: 59  EAIDEAISSNLQNWKIDRISKVNLTILRLAAYEILFDEEVPRSVAINEALEITRKYSDEK 118

Query: 119 HFA 121
             +
Sbjct: 119 SVS 121


>gi|294931333|ref|XP_002779838.1| williams-beuren syndrome critical region protein, putative
           [Perkinsus marinus ATCC 50983]
 gi|239889524|gb|EER11633.1| williams-beuren syndrome critical region protein, putative
           [Perkinsus marinus ATCC 50983]
          Length = 387

 Score = 63.4 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 98/296 (33%), Gaps = 53/296 (17%)

Query: 185 DIETWAHKLNAVMLPTGGIRL--------KELPESIVSLPGFAEGVWWVQDASASIPVQL 236
             E    +L +  + +    L            ++++  P   +    +QD  + +    
Sbjct: 60  SRENAIEQLGSAGIKSKTDPLIPDVITVGPWSSKALIESPLVRDFTLVLQDRGSCLSAHS 119

Query: 237 ----FGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRLEKLRCNLDRL 286
                     ++V+D CA+PG KT  +            + A+++  +R + L   L + 
Sbjct: 120 LLAGVLPGEKITVVDACASPGSKTIHMLQLMRYRKIEGTMVAMELDPKRAKVLLDRLAKA 179

Query: 287 HL----------------------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324
                                    + ++   D   Y   ++   V +D  CS +G +  
Sbjct: 180 GFLPRDGTRTSEKVAHLSEAHGPDISVEVRVGDFIKYSSPEVTH-VNLDPSCSGSGLVDV 238

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           H D   +     + K + FQ ++L   ++       V +S CS+  +++ EVV+K L   
Sbjct: 239 HADSE-SVGAQRLRKLSSFQCRMLDHALTAFPAVRTVCYSTCSIKNEENGEVVKKALNRL 297

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                            ++         +++ P++            GF+   L +
Sbjct: 298 QSGYRREWPFEVGSCWKELTHGARD---VQVRPEVDHGR--------GFYLCKLVK 342


>gi|146088942|ref|XP_001466187.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070289|emb|CAM68626.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 708

 Score = 63.4 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D         FDAVL+D PC+  G   R   +   +    I +SA +QRKL    I  ++
Sbjct: 512 DGSAASHTDSFDAVLLDPPCTGMGL--RPKLMPHAQSIASIQRSADYQRKLFDSCIRHIR 569

Query: 357 --PG--GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412
             P   G++V+S C+   +++E  V   L + P         +A     D++        
Sbjct: 570 GSPASPGVIVYSTCTTTLEENEANVLHFLCTYPSVRLARARTAAQRALCDLSAV------ 623

Query: 413 IRITPDMLEKIDGVSSGMDG 432
                    +  G   G DG
Sbjct: 624 ---------RSYGAQHGTDG 634


>gi|295397759|ref|ZP_06807828.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
           11563]
 gi|294973971|gb|EFG49729.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
           11563]
          Length = 217

 Score = 63.4 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 25  LTCLLDLEYGDSAFRLLSQ--RDQ---ILVRAIVNVTLRFLPRIDAVLDFVLI--SSLPR 77
           L   ++     + F  L     D      +R +V         ID ++D  +    S+ R
Sbjct: 65  LKDSIENFSAKNHFDKLPDVTEDVTVPAYLRTLVEGVKANRFEIDQMIDNHIHGNWSVQR 124

Query: 78  KKYSLQQLLRVSVAQILYLD---VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
            +    Q+LRV+V ++L+ D   V     V+ A+E AK    +    K +N IL  
Sbjct: 125 LELVNLQILRVAVFELLFTDEETVPRVVAVNEAIELAK-LYSDDRARKFINGILSN 179


>gi|269958899|ref|YP_003328688.1| N utilization substance protein B [Anaplasma centrale str. Israel]
 gi|269848730|gb|ACZ49374.1| N utilization substance protein B [Anaplasma centrale str. Israel]
          Length = 173

 Score = 63.4 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 7   ARLVSSHLLSCVMRKRIS---LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           AR ++      +M    S   L  LL+          L + D+ L+  I+   L     I
Sbjct: 19  ARFLAVQGAYSMMFSSYSTEDLDELLEHLCEMRDVLGLGRVDKRLLTKILGSMLSKYSEI 78

Query: 64  DAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           DA++   +     + R       ++R  + ++L  +  +  V++  V+ A          
Sbjct: 79  DAIISEHISKKWTMDRINLISLSVMRAGICELLCFNTNESVVINEYVDIA-SYALEDAEV 137

Query: 122 KLVNSILRR 130
             VN+IL +
Sbjct: 138 DFVNAILNK 146


>gi|71066624|ref|YP_265351.1| NusB antitermination factor [Psychrobacter arcticus 273-4]
 gi|119390801|sp|Q4FPZ1|NUSB_PSYA2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|71039609|gb|AAZ19917.1| probable NusB antitermination factor [Psychrobacter arcticus 273-4]
          Length = 375

 Score = 63.4 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55
            AR  +   L   +           L +  +A   ++ R +               ++  
Sbjct: 53  KARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMRD 112

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114
               +  ++ ++   L   + +       +L +   ++   L++    V+D A++     
Sbjct: 113 IPEQIDALNTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKL-NNH 171

Query: 115 KENRHFAKLVNSILRRV 131
                  KL+N++L R+
Sbjct: 172 FGATDAHKLINAVLDRM 188


>gi|114800202|ref|YP_760752.1| transcription antitermination factor NusB [Hyphomonas neptunium
           ATCC 15444]
 gi|119390777|sp|Q0C0J1|NUSB_HYPNA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|114740376|gb|ABI78501.1| transcription antitermination factor NusB [Hyphomonas neptunium
           ATCC 15444]
          Length = 154

 Score = 63.4 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVTLRFLPRID-A 65
              L  + +   S    +     D          +   D  L ++IVN  +    +ID A
Sbjct: 22  VQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDADPDLFKSIVNSVVEHQAKIDTA 81

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +L  +     L R   +++ LLR   A+ I + +++D  ++   V  A  D  +   AK 
Sbjct: 82  ILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLA-HDFFDEGDAKF 140

Query: 124 VNSILRRV 131
            N++L+ +
Sbjct: 141 ANAVLQNM 148


>gi|229168926|ref|ZP_04296643.1| N utilization substance protein B [Bacillus cereus AH621]
 gi|228614518|gb|EEK71626.1| N utilization substance protein B [Bacillus cereus AH621]
          Length = 114

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
            + ++V   +     IDA +   L    L R     + +LRV+V ++ Y+ ++     ++
Sbjct: 26  FLESLVVGFVDNKEEIDAAIRQNLKKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTIN 85

Query: 106 LAVEQAKRDKENRHFAKLVNSILRR 130
            A+E AK    +    + +N +L  
Sbjct: 86  EAIEIAKTF-GDEESRRFINGVLSN 109


>gi|34762362|ref|ZP_00143364.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887944|gb|EAA25010.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 153

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
           AR     L+        +   L    ++   +       L++     +R  +N   +   
Sbjct: 19  AREEVFKLVFGTEVTESTSDKLKQDFEIYLQNDEEFVATLNENQLEFIRDSINGIAKNYE 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  ++     +    R     + LL V+  +IL+ ++    + +  VE AK    N   
Sbjct: 79  DIKDIIKKNTKNWAYERIGIVERALLIVATYEILFKNIPIEVIANEIVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + VN +L  
Sbjct: 138 YEFVNGVLAN 147


>gi|119485390|ref|ZP_01619718.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
 gi|119457146|gb|EAW38272.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
          Length = 210

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFLPRIDAVLDFVL-I 72
             +   + ++   L +         LS+++        I+         ID +L+  L  
Sbjct: 82  EAIELTQTAINR-LGIAAEFPELIQLSRQEEVAAYAIEILTEIHARRTEIDEILNQALVD 140

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             + R     + +LR++V ++LYL   +   ++ A+E AKR   +    + +N +LRR
Sbjct: 141 WQINRLPRIDRDILRIAVTELLYLGTQEQVALNEAIELAKRY-SDEDSYRFINGVLRR 197


>gi|28895207|ref|NP_801557.1| transcription antitermination protein NusB [Streptococcus pyogenes
           SSI-1]
 gi|28810453|dbj|BAC63390.1| putative transcriptional terminator [Streptococcus pyogenes SSI-1]
          Length = 126

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 27  CLLDLEYGDSAFRLLSQRDQI------LVRAIVNVTLRFLPRIDAVLDFVLIS--SLPRK 78
            LL        +  ++  D         + ++V         +D ++   L    SL R 
Sbjct: 4   ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTGVNNHKEELDNLISTHLKKGWSLERL 63

Query: 79  KYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
             + + LLR+ + +I Y D   D   ++  +E AK+   +   AK +N +L + 
Sbjct: 64  TLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKY-SDETSAKFINGLLSQY 116


>gi|260903826|ref|ZP_05912148.1| NusB antitermination factor [Brevibacterium linens BL2]
          Length = 121

 Score = 63.0 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAV 103
           +     IV         ID ++       +L R       LL++   +I++ D V D A 
Sbjct: 27  KAYAVEIVEGITSHREEIDEIIATYAEGWTLERMPAVDLALLQIGTWEIIFNDEVPDKAA 86

Query: 104 VDLAVEQAKRDKENRH 119
           +D AV  A++   +  
Sbjct: 87  IDEAVSLARQFSTDDS 102


>gi|160893229|ref|ZP_02074017.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
 gi|156865312|gb|EDO58743.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
          Length = 144

 Score = 63.0 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 14/141 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTC-----------LLDLEYGDSAFRLLSQRDQILVRA 51
           +    R     +L  +    +S              L D +        +++ ++  +  
Sbjct: 2   TRREIRETVFKILFSLEFNDVSEIREEAELELEHASLYDEDDNKMDAVAMTEEEKAYIID 61

Query: 52  IVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVE 109
            V   +  +  ID  +  +     L R   +   +LR++V +I +  D+     ++ AVE
Sbjct: 62  RVEAVVSHITEIDETISGISQGWKLGRIGKAELAILRLAVYEIKFDEDIPVKVAINEAVE 121

Query: 110 QAKRDKENRHFAKLVNSILRR 130
            AK    +      +N++L +
Sbjct: 122 LAKTYC-DVEAKSFINALLAK 141


>gi|119494305|ref|XP_001264048.1| NOL1/NOP2/sun domain protein, putative [Neosartorya fischeri NRRL
           181]
 gi|119412210|gb|EAW22151.1| NOL1/NOP2/sun domain protein, putative [Neosartorya fischeri NRRL
           181]
          Length = 560

 Score = 63.0 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 54/382 (14%), Positives = 91/382 (23%), Gaps = 96/382 (25%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
              R          +          Y  +    ++         V      +        
Sbjct: 147 VYPRWVRINNLRTTMEEQLQFTFKAYTRVNSLAELGEKDEAKLYVDPHVPDLVAVAPGVD 206

Query: 212 IVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQL--------- 259
             S P +  G   +QD ++  P           +  +LD CAAPG KT  +         
Sbjct: 207 FTSSPAYKNGQIILQDKASCFPAYLLLGDSEDWSGDLLDGCAAPGNKTTHMASLLAKHAA 266

Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV------LV 312
                  + ++D SK R + L+  +          +             D        L+
Sbjct: 267 GKGVTHHIFSMDASKVRSKTLQKMVTAAGADDIVTVLQGQDFLALDPTEDRFANVTGLLL 326

Query: 313 DAPCSSTGTIRRHP-----------------DVLWTRDTDDIV----------------- 338
           D  CS +G + R                        +   D                   
Sbjct: 327 DPSCSGSGIVGRDDVPKLALPAAASTQTGKSQGKKRKRRHDEEEETQPGNVATSASTSAS 386

Query: 339 ------------------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
                             K +  Q +++   +SF      V +S CS+   ++E VV +V
Sbjct: 387 ATDENEFASATLDPDRLTKLSNLQARIVEHALSFPAAT-RVTYSTCSIHLIENEAVVSRV 445

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI----------------------TPD 418
           L S         +     +   M     P   +R                          
Sbjct: 446 LASDVARSRGWRIMRREEQPRGMKAW--PHRGVRTEGRYGDAKGDGEAAAVDLSDEELEA 503

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
            L        G+ GFF     R
Sbjct: 504 CLRCWADDEEGLGGFFVAGFVR 525


>gi|94264516|ref|ZP_01288303.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|94265524|ref|ZP_01289272.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|93453965|gb|EAT04311.1| NusB antitermination factor [delta proteobacterium MLMS-1]
 gi|93455075|gb|EAT05302.1| NusB antitermination factor [delta proteobacterium MLMS-1]
          Length = 135

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 5/121 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF-LP 61
           +   AR ++   L       +     L     +      S+R     R ++         
Sbjct: 5   TRRKARELALQALYQGEMLGVGALDTLPSLCENFEA---SRRALPYARELLAGIEAHGEA 61

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
              A+        L R  Y  + L+R++V ++ + D V     +D AVE AKR   +   
Sbjct: 62  IDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYGADDSP 121

Query: 121 A 121
           A
Sbjct: 122 A 122


>gi|297673373|ref|XP_002814741.1| PREDICTED: putative methyltransferase NSUN7-like [Pongo abelii]
          Length = 718

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 144/476 (30%), Gaps = 64/476 (13%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVL 67
           ++++   +  ++ S   +L     +    L    DQ   R    +    L++   ++ +L
Sbjct: 50  AANIFQGIQIEK-SAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETIL 108

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
               I         L  L+ V +            V+    E     +E  +        
Sbjct: 109 IDSCIFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIK 167

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLY 177
           L             ++   I+PE  +++                K     + +      Y
Sbjct: 168 LAAALARCRIKHDAVSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGY 227

Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQ 235
             +     I+    K+ AV      + +        ++++  F +     QD S S+ V 
Sbjct: 228 NKVKSVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVH 284

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCN 282
               L N+    L    G       +              G +  A D   + L      
Sbjct: 285 SVKALLNMEDDILMVNTGSWYTVAHMSVLTNNNTSKVFVCGVQSQAKDPDLKTL------ 338

Query: 283 LDRLHLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWT 331
             ++     +I+     +   K    +    +L+   CS  G           H D  + 
Sbjct: 339 FTKIGCKNIEILRETFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFL 398

Query: 332 RDT-------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           +D        D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L   
Sbjct: 399 KDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVVEKALE-- 455

Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               + +      ++     + L     I+++ D   +++      +G F   L R
Sbjct: 456 ---FQDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507


>gi|303232700|ref|ZP_07319385.1| transcription antitermination factor NusB [Atopobium vaginae
           PB189-T1-4]
 gi|302481186|gb|EFL44261.1| transcription antitermination factor NusB [Atopobium vaginae
           PB189-T1-4]
          Length = 192

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 8/163 (4%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
              AR  +  LL     + + +  +++  Y  +   L         R +         ++
Sbjct: 10  RTRARSHALQLLFQAESRSMRVADIINAHYLITEGPLEE-----FARTLALGADAVRDKL 64

Query: 64  DAVL-DFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           DA++ D     ++ R     + ++R+++ ++L+  DV     ++  V  AK        A
Sbjct: 65  DALIADTATNWNVTRLLSVDRNIIRLALFEMLHVDDVDVAVTINEFVILAKAY-GTDDSA 123

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
             VN +L +V+R             I+P    E        + 
Sbjct: 124 AFVNGVLGQVARRLSAGEDIAHIYGIVPPQSAENASVEDNTDE 166


>gi|166030414|ref|ZP_02233243.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
           27755]
 gi|166029772|gb|EDR48529.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
           27755]
          Length = 132

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 9/126 (7%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYG---DSAFRLLSQRDQILVRAIVNVTL 57
           MK     R     ++             +  +     +   +   + D   +R      +
Sbjct: 1   MK-RTEMREHIFRMVFSYEFN---SDQEMPQQMQLYFEQLDQEPKEEDMAYIRDKALNVI 56

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115
                ID +L+  +      R       +LR++V ++ Y  DV     ++ AVE AK+  
Sbjct: 57  LKSEEIDEMLNEHVTGWKTSRMNKVDLSILRLAVYEMKYDEDVPVGVAINEAVELAKKYS 116

Query: 116 ENRHFA 121
            +   A
Sbjct: 117 GDEGPA 122


>gi|300361963|ref|ZP_07058140.1| transcription antitermination factor NusB [Lactobacillus gasseri
           JV-V03]
 gi|300354582|gb|EFJ70453.1| transcription antitermination factor NusB [Lactobacillus gasseri
           JV-V03]
          Length = 133

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 9/128 (7%)

Query: 8   RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R ++   +    +        +          +            IVN  L     +D  
Sbjct: 7   RRIAMQAIYLANQGNLTDAEEVCQKALKALELKSFPD----YSAEIVNGVLANKKELDEQ 62

Query: 67  LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123
           L   L     L R       +L V++ ++     +   A ++ A+        ++   K 
Sbjct: 63  LSKYLKKGWRLNRINEIDLAILEVALYEMQNSKAIEPVAALNEALNLCDEF-SSKESKKF 121

Query: 124 VNSILRRV 131
           +N +L   
Sbjct: 122 INGLLANF 129


>gi|237741349|ref|ZP_04571830.1| N utilization substance protein B [Fusobacterium sp. 4_1_13]
 gi|229430881|gb|EEO41093.1| N utilization substance protein B [Fusobacterium sp. 4_1_13]
          Length = 153

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
           AR     L+        +   L    ++   +       L++     +R  +N   +   
Sbjct: 19  AREEVFKLVFGTEVTESTSDKLKQDFEIYLQNDEEFVATLNENQLEFIRDSINGIAKNYE 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  ++     +    R     + LL V+  +IL+ +     + +  VE AK    N   
Sbjct: 79  DIKDIIKKNTKNWAYERIGIVERALLIVATYEILFKNTPIEVIANEIVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + VN IL  
Sbjct: 138 YEFVNGILAN 147


>gi|301066686|ref|YP_003788709.1| transcription termination factor [Lactobacillus casei str. Zhang]
 gi|300439093|gb|ADK18859.1| Transcription termination factor [Lactobacillus casei str. Zhang]
          Length = 135

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 30  DLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQ 84
                D+ +  +  +D      +  +V   L     +DA L   L     L R       
Sbjct: 22  PEADKDAVYAEVLPQDTEVPAYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDLI 81

Query: 85  LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           +LR+ + +I Y + + + A ++ A+  AKR  +++  AK VN IL    +
Sbjct: 82  ILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQS-AKFVNGILANFIQ 130


>gi|332219044|ref|XP_003258668.1| PREDICTED: putative methyltransferase NSUN7 isoform 2 [Nomascus
           leucogenys]
          Length = 475

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 122/414 (29%), Gaps = 57/414 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L +  DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSASEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEESISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDSDLKTL------FTKM 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHETFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L 
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVVKKALE 455


>gi|332219042|ref|XP_003258667.1| PREDICTED: putative methyltransferase NSUN7 isoform 1 [Nomascus
           leucogenys]
          Length = 718

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 122/414 (29%), Gaps = 57/414 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71
           +   +R   S   +L     +    L +  DQ   R    +    L++   ++ +L    
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSASEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           I         L  L+ V +            V+    E     +E  +        L   
Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEESISEVQEVENLLNSFKIKLAAA 171

Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181
                     ++   I+PE  +++                K     + +      Y  + 
Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
               I+    K+ AV      + +        ++++  F +     QD S S+ V     
Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288

Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286
           L N+    L    G       +              G +  A D   + L        ++
Sbjct: 289 LLNMDDDILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDSDLKTL------FTKM 342

Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334
                +I+     +   K    +    +L+   CS  G           H D  + +D  
Sbjct: 343 GCKNIEILHETFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402

Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
                 D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L 
Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVVKKALE 455


>gi|291558612|emb|CBL37412.1| transcription antitermination factor NusB [butyrate-producing
           bacterium SSC/2]
          Length = 137

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMR-KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           MK     R     +L CV   ++      ++L +       ++++ Q  +       +  
Sbjct: 1   MK-RSEVREHIFRILFCVEFCEKEEFEDQVELYF--HGHENINEKTQKEITEKTENLIEH 57

Query: 60  LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117
           L  ID  +       +L R   +   +LR++  +IL  + V     ++ AVE AK+   N
Sbjct: 58  LDEIDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYC-N 116

Query: 118 RHFAKLVNSILRRVSREK 135
              A  +N +L ++ ++ 
Sbjct: 117 EKAAPFINGVLSKIGQDM 134


>gi|256846520|ref|ZP_05551977.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_36A2]
 gi|294784109|ref|ZP_06749410.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_27]
 gi|256718289|gb|EEU31845.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_36A2]
 gi|294488179|gb|EFG35524.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_27]
          Length = 153

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
           AR     L+        +   L    ++   +       L++     +R  +N   +   
Sbjct: 19  AREEVFKLVFGTEVTESTSDKLKQDFEIYLQNDEEFVATLNENQLEFIRDSINGIAKNYE 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  ++     +    R     + LL V+  +IL+ +     + +  VE AK    N   
Sbjct: 79  DIKDIIKKNTKNWAYERIGIVERALLIVATYEILFKNTPIEVIANEIVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + VN +L  
Sbjct: 138 YEFVNGVLAN 147


>gi|255284121|ref|ZP_05348676.1| transcription antitermination factor NusB [Bryantella formatexigens
           DSM 14469]
 gi|255265295|gb|EET58500.1| transcription antitermination factor NusB [Bryantella formatexigens
           DSM 14469]
          Length = 134

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 3   SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           S    R     LL  +   ++  L    +L   +      +++D   +    +     LP
Sbjct: 2   SRREIREHIFKLLFLLEFYQKEELNEQAELYMDEVEEAAPTEKDAEYIFDKFHKIEEKLP 61

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           ++D  L        L R       +LR++  ++L   D+     ++ AVE AK+   +  
Sbjct: 62  QLDERLAAESQGWKLGRMNKVDLAILRLAAYEVLEDDDIPVGVAINEAVELAKKYGGDDS 121

Query: 120 FA 121
            +
Sbjct: 122 PS 123


>gi|237736360|ref|ZP_04566841.1| transcription antitermination protein NusB [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421402|gb|EEO36449.1| transcription antitermination protein NusB [Fusobacterium
           mortiferum ATCC 9817]
          Length = 132

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR     L+     K  S   +LD           ++ +   ++  +N      
Sbjct: 1   MSRRV-AREELFKLVFESELKEESTKEVLDNYLKRDEVLT-NENELAFIKKYMNGIAENN 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            RI   ++  +   S  R     + LLR SV ++L        VV+  VE AK    +  
Sbjct: 59  DRILETINNNITGWSFERIGNVEKALLRCSVYELLCETTPHEIVVNEVVELAK-LYGDEK 117

Query: 120 FAKLVNSILRR 130
            ++ VN +L +
Sbjct: 118 TSEFVNGVLAK 128


>gi|189208728|ref|XP_001940697.1| NOL1/NOP2/Sun domain family [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976790|gb|EDU43416.1| NOL1/NOP2/Sun domain family [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 551

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 15/114 (13%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--- 397
           + FQ  +L   + F +    + +S CS+  +++E VV K L SS        +       
Sbjct: 386 SSFQLHILTHAMRF-ESAHKITYSTCSIHFEENEGVVFKALASSIAKERGWKILKRESQV 444

Query: 398 -----------WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      W+   +           +    +    G   G  GFF  A  R
Sbjct: 445 TGLQQWHRRGAWEDEKLDNEPDESFKRDVLEACIRCDKGTEEGTMGFFVAAFVR 498


>gi|154339076|ref|XP_001565760.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 842

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-----PGGIV 361
           FDAVL+D PC+  G   R   +   +    I +SA +QRKL    I  ++     P G++
Sbjct: 652 FDAVLLDPPCTGMGL--RPKLMPHMQSAASIQRSADYQRKLFDSCIRHIRGSPTSP-GVL 708

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSP 385
           V+S C+   +++E  V   LR+ P
Sbjct: 709 VYSTCTTTLEENEANVLHFLRTYP 732


>gi|312219561|emb|CBX99504.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1384

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 15/118 (12%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RSSPIPVELVPLNSA 396
           + FQ  +L   + F      + +S CS+  +++E VV + L            L      
Sbjct: 423 SAFQLHILTHAMRF-ANAHKITYSTCSIHFEENEGVVLQALSTSVAKDRGWRILRRDEQV 481

Query: 397 YWKSIDMAMALSPEGWI----------RITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                        +G +           +    +    G   G  GFF     R   P
Sbjct: 482 DGLRKWARRGAWEDGKLNCAVGEPRKQEVLEGCIRCDKGTEEGTMGFFVAGFVREDAP 539


>gi|154289963|ref|XP_001545584.1| hypothetical protein BC1G_15882 [Botryotinia fuckeliana B05.10]
 gi|150848515|gb|EDN23708.1| hypothetical protein BC1G_15882 [Botryotinia fuckeliana B05.10]
          Length = 632

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 341 ACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399
           A FQ +LLL    +  P    + +S CS+  +++E VVQK L S     +   +     +
Sbjct: 412 AEFQLELLLHAFKY--PAARKITYSTCSIHAEENESVVQKALASDIAKEKGWKILRRDNQ 469

Query: 400 SIDMAMAL------SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              M          + +G   +    +    G  +   GFF     R
Sbjct: 470 IRGMREWPVRGSIEACDGDEVVAEGCIRANKGDENATMGFFLAGFVR 516


>gi|328947375|ref|YP_004364712.1| NusB antitermination factor [Treponema succinifaciens DSM 2489]
 gi|328447699|gb|AEB13415.1| NusB antitermination factor [Treponema succinifaciens DSM 2489]
          Length = 161

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 26/144 (18%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLD-LEYGDSAFRLLSQR--------------D-- 45
           S  N R+ +   L      + SL  LL      + +    S +              D  
Sbjct: 2   SRRNGRIFAVQALYSYDVGKASLEDLLKLEWLKEDSENNPSGKFVLPETVTETSETEDFS 61

Query: 46  --QI----LVRAIVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL- 96
             +       R +++ T+  +  ID  +   L    +  R       +LR+SV  +LY  
Sbjct: 62  QSRAESYDFARLLISGTINHIQEIDEKIKAHLTANWNFDRLNRVTLSILRISVFALLYQK 121

Query: 97  DVADYAVVDLAVEQAKRDKENRHF 120
           ++    ++D A+  +K    +  F
Sbjct: 122 ELKPTIIIDEAIAISKEFGTDDSF 145


>gi|268608467|ref|ZP_06142194.1| transcription termination factor [Ruminococcus flavefaciens FD-1]
          Length = 138

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S    R  +  L+   + +      + +L         +   D+  V+ IV  TL     
Sbjct: 2   SRREIRDSAFKLVFEQLLRD---DDITELYDIAEEIDEIIVNDE--VKKIVEGTLAHAEE 56

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           +D+++       SL R       +LR+++ + LY D     A +  A+  A     N   
Sbjct: 57  LDSIIAGYSKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISEAINLANTYSYNEDS 116

Query: 121 A 121
            
Sbjct: 117 K 117


>gi|330920953|ref|XP_003299218.1| hypothetical protein PTT_10168 [Pyrenophora teres f. teres 0-1]
 gi|311327176|gb|EFQ92672.1| hypothetical protein PTT_10168 [Pyrenophora teres f. teres 0-1]
          Length = 555

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 15/114 (13%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--- 397
           + FQ  +L   + F +    + +S CS+  +++E VV K L SS        +       
Sbjct: 390 SSFQLHILTHAMRF-ESAHKITYSTCSIHFEENEGVVFKALASSIAKERGWKILKRESQV 448

Query: 398 -----------WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                      W+   +           +    +    G   G  GFF  A  R
Sbjct: 449 AGLKQWHRRGVWEDEKLDNEPDESFKKEVLEACIRCDKGTEEGTMGFFVAAFVR 502


>gi|225021344|ref|ZP_03710536.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945726|gb|EEG26935.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 277

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 14  LLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
           +L     + +  +  + D          L          I+      L RID V+   L 
Sbjct: 1   MLYEAEARDVDPVAIVEDRINLARVDITLVAPIAAYTSEIIAGVAEELNRIDDVIAEYLA 60

Query: 73  --SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
               L R     + +LRV+V ++++  DV     +  AVE A +          +N++L 
Sbjct: 61  ENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSG-ASAPAYINAVLD 119

Query: 130 R 130
            
Sbjct: 120 S 120


>gi|295111308|emb|CBL28058.1| transcription antitermination factor NusB [Synergistetes bacterium
           SGP1]
          Length = 180

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 5/126 (3%)

Query: 9   LVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQ-RDQILVRAIVNVTLRFLPRIDAV 66
            ++   L  +       L   L+L  G  +         +   RA+V  T      +D V
Sbjct: 32  ELAVQFLYSMECGPGQDLEEALELFLGAESCAEAEPPAVKEYCRALVRGTWSRRTEVDEV 91

Query: 67  LDFVLIS-SLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
           L  V+ +    R     + +LR++V +  L   +   + +  AV  A+        A+ V
Sbjct: 92  LLSVVTNWRPERMVAVDRAVLRLAVFEGFLDCALPFKSAISEAVNLARSF-GTEDSARFV 150

Query: 125 NSILRR 130
           N +L R
Sbjct: 151 NGVLAR 156


>gi|302872150|ref|YP_003840786.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47]
 gi|302575009|gb|ADL42800.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47]
          Length = 136

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 12  SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
             +L     + +    +         +        D+  +  ++   ++    ID ++  
Sbjct: 1   MKILYAYRFENMQQDIIEFYKRFRELNQNEDFKDVDEKYLEKLLKGVIQNQQIIDNLIAK 60

Query: 70  VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                 L R      +L+R++V ++L+  DV     +D AV+ A            VN I
Sbjct: 61  YSKDWPLNRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119

Query: 128 LRRVSREKIELLQRIA 143
           L R++  +++  +   
Sbjct: 120 LGRIAENEVKRSKNHD 135


>gi|257066525|ref|YP_003152781.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548]
 gi|256798405|gb|ACV29060.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548]
          Length = 127

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R     L+            +  +E  D A   L   D+  VR  ++  L     ID  L
Sbjct: 7   REWVFKLIYQ--------DSISKIEDIDKALEELDLTDEDFVRKSISSFLNNFSSIDEKL 58

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
              L S   R    L+ +L +S+ ++ ++D+     ++ AV  AK+  +   + 
Sbjct: 59  TSNLDSKRKRLSKVLRSILYLSINEMYFMDIPVSVSINEAVNLAKKYSDEDDYK 112


>gi|241688807|ref|XP_002412858.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215506660|gb|EEC16154.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 237

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIPVELVPLNSAYWKSIDMAMALS 408
             + PGG +V+S CSL    ++ VV   L+     +P+   +V L+SA            
Sbjct: 150 KCLLPGGSLVYSTCSLSPIQNDGVVHMALQQLWETTPLEFAVVDLSSALRPLEGTFRFFG 209

Query: 409 PE--GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
               G +   P +      +       +   + R+
Sbjct: 210 GSRYGCL-ALPHLPNNFGPL-------YVAKIERV 236


>gi|212533769|ref|XP_002147041.1| NOL1/NOP2/sun domain protein, putative [Penicillium marneffei ATCC
           18224]
 gi|210072405|gb|EEA26494.1| NOL1/NOP2/sun domain protein, putative [Penicillium marneffei ATCC
           18224]
          Length = 545

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 75/484 (15%), Positives = 140/484 (28%), Gaps = 101/484 (20%)

Query: 47  ILVRAIVNVTLRFLPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD 105
             + A+V    ++   +  V+ +  ++SS P+    L  LL       L+      A   
Sbjct: 37  AQIYALVTEASKWDILLKEVIENSGILSSEPKLTPILCLLL---AHDFLFSKNGIAAPAS 93

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165
             + QA    + R  A+L  + +RR      +L   I           E +E+ Y +   
Sbjct: 94  HPLRQAIDRHKVRLKAELTKARVRRNCASISDLQSAILAEKRALLGPDELMESMYPRWVR 153

Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFA 219
           +    + ++                ++L +         +              S   + 
Sbjct: 154 INNIKSTLNTQMEAAFKDHKRVGRLNELKSANQIYVDAHIPDLVALAPGTVDFSSSNAYK 213

Query: 220 EGVWWVQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQ--------------LIV 261
            G   +QD ++  P  L         +  ++D CAAPG KT                   
Sbjct: 214 NGEIILQDKASCFPAYLLLGDKEDAWDGDLIDGCAAPGNKTTHLASLLAARQKLHGKKQT 273

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV------LVDAP 315
             +K+ ++D S  R + L+  +          +             +        L+D  
Sbjct: 274 RKSKIISMDASAPRSKILQKMVSVAGADKLVTVLAGQDFLALDPEDERFELVTGLLLDPS 333

Query: 316 CSSTGTIRRHPDVL-----------------WTRDTDDIV-------------------K 339
           CS +G I R                        +   +                     K
Sbjct: 334 CSGSGIIGRDDVPKLVLPEQGKASKSSNRGTKRKRPTEDEAVKPDDTQKTDNVDAERLLK 393

Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RSSPIP----VELV 391
            +  Q  ++   + F      V +S CS+   ++E VV++VL              ++  
Sbjct: 394 LSNLQTHIVEHALKFPAAT-RVTYSTCSIHILENECVVERVLASDTARRRGWRIMRLDEQ 452

Query: 392 PLNSAYWKSI------------DMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAV 436
           P     W+              D+A+ L+ E     +R  P   E          GFF  
Sbjct: 453 PQGLQKWRHRGIRRHTNGKASSDIAVKLTDEQIDACLRCWPGDDEC-------TGGFFVA 505

Query: 437 ALRR 440
              R
Sbjct: 506 GFVR 509


>gi|291536362|emb|CBL09474.1| transcription antitermination factor NusB [Roseburia intestinalis
           M50/1]
 gi|291538768|emb|CBL11879.1| transcription antitermination factor NusB [Roseburia intestinalis
           XB6B4]
          Length = 137

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 4/130 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R     +L  V            +   +       ++D+  +   V      L  
Sbjct: 8   TRREIREQVFKMLFRVEFYNQE-EMSEQIALCEDDACSWKEKDKTYIFEKVEKISEKLEE 66

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           IDA ++ V       R       L+R++V ++LY  DV     ++ AVE AK+     + 
Sbjct: 67  IDAKINEVSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVPAKVAINEAVELAKQY-GTDNS 125

Query: 121 AKLVNSILRR 130
              VN +L +
Sbjct: 126 PSFVNGVLAK 135


>gi|157803349|ref|YP_001491898.1| transcription antitermination protein NusB [Rickettsia canadensis
           str. McKiel]
 gi|157784612|gb|ABV73113.1| transcription antitermination protein NusB [Rickettsia canadensis
           str. McKiel]
          Length = 178

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 7   ARLVSSHLLSC-VMRKRIS----LTCLLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++        L  +L     +++   LS+  +        + +V   
Sbjct: 34  ARIAAVQAMYQHILQDNQDMEYILQNVLSFYQNNNSITDLSENLKISLSISHFKMLVKSV 93

Query: 57  LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
                ++D ++D  L            L+ L RVS+ ++L+        V++   + A  
Sbjct: 94  FENFNKLDEMIDNHLTNDKDPAHMPILLRALFRVSICELLFCHTTPAKVVINEYTDIAND 153

Query: 114 DKENRHFAKLVNSILRR 130
              N H    VNS+L +
Sbjct: 154 M-LNEHEIGFVNSVLDK 169


>gi|254775817|ref|ZP_05217333.1| Fmu protein [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 70

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 14/80 (17%)

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           V+++ CS    ++  VV   LR  P  V  +     +    D+         +++ P   
Sbjct: 2   VLYATCSPHLAETVGVVADALRRHP--VSALDARPLFEPVADLGDGPH----VQLWPH-- 53

Query: 421 EKIDGVSSGMDGFFAVALRR 440
                   G D  FA ALRR
Sbjct: 54  ------RHGTDAMFAAALRR 67


>gi|67624561|ref|XP_668563.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54659777|gb|EAL38341.1| hypothetical protein Chro.70458 [Cryptosporidium hominis]
          Length = 505

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            + Y        V+V  P  S   + +H  V        +   + FQ K+L+  +S  + 
Sbjct: 359 WYHYKNTISNLRVIVLDPSCSGSGLPQHGKVEGVNIEKRLKSLSEFQTKMLIHSLSSFQS 418

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIR 414
              V +S CS+  +++E+VV   L        L   + +    W++ + +   S  G I 
Sbjct: 419 VETVCYSTCSIFTEENEQVVLNSLEKCKNSGNLQFSLEIALENWENPNRSYQDSSFGEIY 478

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
                   ++  +    GFF     +
Sbjct: 479 ---KKCIFVNPETHNCRGFFLAKFVK 501


>gi|238491244|ref|XP_002376859.1| NOL1/NOP2/sun domain protein, putative [Aspergillus flavus
           NRRL3357]
 gi|220697272|gb|EED53613.1| NOL1/NOP2/sun domain protein, putative [Aspergillus flavus
           NRRL3357]
          Length = 557

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 40/157 (25%)

Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
             S      +       D + + K +  Q +++   +SF      + +S CS+   ++E 
Sbjct: 371 SVSMSATDENEMASTHLDLERLTKLSNLQTRIVEHAMSFPAAT-RITYSTCSIHLTENES 429

Query: 376 VVQKVL---------------RSSPIPVELVPLNSAYWKSIDMAMALSP----------- 409
           VV+++L                  P  +          +S     + +            
Sbjct: 430 VVERLLTSEVAKRRGWRIMRRNEQPEGLRTWKHRGVQTESRGSGDSETQDGTQGAELKVD 489

Query: 410 ------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                 EG +R  P           G+ GFF     R
Sbjct: 490 LSDEVLEGCLRCWPGD-------DEGLGGFFVAGFVR 519


>gi|295108281|emb|CBL22234.1| transcription antitermination factor NusB [Ruminococcus obeum
           A2-162]
          Length = 171

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 8   RLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           R     LL       +       L + +       +S++DQ  ++   +  L  L  ID 
Sbjct: 7   REHIFKLLFMTQFNTENEMPEQ-LSIYFE--GLGEVSEKDQEAIQQKYDHILEHLEEIDE 63

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +L+         R        LR++V ++ +  DV     ++ AVE AK        +
Sbjct: 64  ILNDYSRGWKTTRMNRVDLTALRLAVYEMKMDEDVPVGVAINEAVELAKLFGGEDSGS 121


>gi|291385691|ref|XP_002709322.1| PREDICTED: NOL1/NOP2/Sun domain family, member 7 [Oryctolagus
           cuniculus]
          Length = 725

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/447 (12%), Positives = 130/447 (29%), Gaps = 43/447 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVL 67
           ++++   +  ++     ++     +         ++   R    +    L++   ++ +L
Sbjct: 55  AANIFQGIRVEKSP-DKVIIKYGNEPLRSFSEPEEESFQRLSYELAFSALKYQDILETML 113

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
               I         L  L+ V +            V+    E     +E  +      + 
Sbjct: 114 IDSYILPSTTIPDHLNSLIIVMLYD-FQDRKFQTRVLSDNEESLSEVQEVENLLNSFKTK 172

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFY--GKERVLAISDACISPLYIDLTVKFD 185
           L             ++   I+PE  +++            +         +Y +L +K  
Sbjct: 173 LAAALARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKIKGY 232

Query: 186 IE-----TWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFG 238
            +         K+ AV      + +      + +V++  F +     QD S S+ V    
Sbjct: 233 RKVKSILHIDDKVFAVDQHCYDVLIFPSHLKKDLVNIDLFKDYKLIFQDKSRSLAVHSVK 292

Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-------SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
            L N+    L    G       +       +         S  +   L+    ++     
Sbjct: 293 ALLNMEDDILMVNTGSWYTVAHMSILTHNNTSKIFVCRVRSHAKDPDLKKLFTKMGCKNI 352

Query: 292 DIIE---MDAFDYCPKKLFDAVLVDAPCS---------------STGTIRRHPDVLWTRD 333
           +I+     D      +     V++  P                    T            
Sbjct: 353 EILHDIFTDIDSKDQRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTDLLKDLSKGGTS 412

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP- 392
            D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L      +++ P 
Sbjct: 413 KDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVYTEENEAVVKKALEFQDSGIKVQPY 471

Query: 393 --LNSAYWKSIDMAMALSPEGWIRITP 417
                         + LS + + R+ P
Sbjct: 472 RLSPPVLPLCSLKEIQLSTDKFFRMEP 498


>gi|260583696|ref|ZP_05851444.1| transcription antitermination factor NusB [Granulicatella elegans
           ATCC 700633]
 gi|260158322|gb|EEW93390.1| transcription antitermination factor NusB [Granulicatella elegans
           ATCC 700633]
          Length = 154

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 18/146 (12%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLT-----CLLDLEYGDSAFRLLSQRDQILVRA------ 51
                R+++   L  +   +           LD+ + + +F      ++ L+        
Sbjct: 7   KRRALRIIAIQALYQMDICKDLSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEFPEIHY 66

Query: 52  ---IVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQIL--YLDVADYAVVD 105
              ++      L  IDA++   L    L R       ++RV+V ++    L+V     ++
Sbjct: 67  SLDLIQGVQNQLEEIDALISSHLKGWELNRIVRLDLMIMRVAVCEMRSPELEVPQTVALN 126

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRV 131
            A+E AK    +   AK +N +L   
Sbjct: 127 EAIEIAK-LYSDEKSAKFINGVLSNF 151


>gi|160938277|ref|ZP_02085632.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438650|gb|EDP16407.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
           BAA-613]
          Length = 272

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 19/147 (12%)

Query: 3   SGMNARLVSSHLLSCVMR--KRISLTCLLDLEYGDSAFR--------------LLSQRDQ 46
           +    R     +L        +      L   +                     L + D 
Sbjct: 51  TRRELREHCFKMLFSADFYPTQEEAIAQLGQYFQSPEEDDVDESGILQVLHKVELKEADS 110

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVV 104
             ++A     +  +P ID  L+         R       +LR+++ ++L+ D + +   +
Sbjct: 111 EYLQARTANIMEKIPEIDEKLNQAAAGWKTKRMGKVELTILRLALYEMLHDDAIPEKVSI 170

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRV 131
           + AVE AK+   N      VN IL + 
Sbjct: 171 NEAVELAKKFGGNDS-PSFVNGILAKF 196


>gi|304413734|ref|ZP_07395178.1| transcription termination factor [Candidatus Regiella insecticola
           LSR1]
 gi|304283825|gb|EFL92219.1| transcription termination factor [Candidatus Regiella insecticola
           LSR1]
          Length = 182

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74
           L      +     + D++    + + + + D      +++        +D ++   L   
Sbjct: 17  LYSWQLSK---NDIADIQSYFLSEQDMKEVDINYFGQLLSGVAVDTATLDRLMAPYLSRQ 73

Query: 75  LPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +       + +LR++V ++    D+    V++ A+E AK         K VN +L +
Sbjct: 74  IEDLGQIEKAILRLAVFELSQRDDIPYKVVINEAIELAK-IFGAEDSHKFVNGVLDK 129


>gi|6580774|gb|AAF18280.1| N-utilization substance protein B [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 129

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQR-----DQILVRAIVNVTLRFLPRIDAVLDFVL--I 72
            ++  L  LLD  +       +        +      IV         ID V+   L   
Sbjct: 1   MEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRGVGTRCEEIDRVISENLSER 60

Query: 73  SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
            SL R    ++Q+LR    ++L   DV    V+   ++ A     +R     VN +L  
Sbjct: 61  WSLDRLDRPMRQILRAGTYELLARPDVPTATVISEYIDVANAFY-DRQEKNFVNGLLDT 118


>gi|226226881|ref|YP_002760987.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
 gi|226090072|dbj|BAH38517.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
          Length = 157

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 4/125 (3%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   L     +   LT +  +         +   +++    ++         +DA L
Sbjct: 29  RARALQALYAADLRD--LTQVKRIATTVFDDLAIDPAERLFASRLIATVADRGAVLDAAL 86

Query: 68  DFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
             V     L R     + +LR++ A++   +     V+  AV  A+R       A+ VN 
Sbjct: 87  VEVTANWRLERLGAIERSVLRLAAAELAREETPVKVVLQEAVHLAERY-GTERSARFVNG 145

Query: 127 ILRRV 131
           +L   
Sbjct: 146 VLDAY 150


>gi|149200420|ref|ZP_01877436.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
 gi|149136489|gb|EDM24926.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
          Length = 156

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 15/136 (11%)

Query: 1   MKSGM--NARLV----SSHLLSC-----VMRKRISLTCLLDLEYGDSAFRLL--SQRDQI 47
           M   +  N R +    +   L       +  +       +D      +      S +   
Sbjct: 1   MSKKIKRNPRSLGRKWALQYLYQSDIAKLEFQEEEFALFIDQIENAPSAPNEHESSKGFA 60

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVD 105
             R I+   L  +  IDA +     +  + R   + + +LR++V +++ +       +V+
Sbjct: 61  FAREIIQGVLDKVKEIDAYITEEAKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVN 120

Query: 106 LAVEQAKRDKENRHFA 121
            AVE AK       F 
Sbjct: 121 EAVELAKTFGNTDSFK 136


>gi|150390264|ref|YP_001320313.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
 gi|149950126|gb|ABR48654.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
          Length = 129

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
             +L  +          + L       ++     Q  V   +  T+  L  ID  +    
Sbjct: 1   MKVLFEMEMNNEMNVESIKLYMDREPQKI---EQQEYVHTSITKTIENLEEIDTYIKQYS 57

Query: 72  I-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
               L R       +LR+++ ++L++ ++     V+ A+E  K+       +  +N IL 
Sbjct: 58  KGWKLNRIANVDLAILRLALTEMLHMGEIPYRVSVNEAIELGKKYSAEESAS-FINGILG 116

Query: 130 RV 131
           R 
Sbjct: 117 RF 118


>gi|72185404|ref|XP_781021.1| PREDICTED: similar to Nol1 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 71

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362
           FD VL+DAPCS TG I +   V  ++D  DI + +  Q++L+L  I  +    K GG +V
Sbjct: 5   FDRVLLDAPCSGTGVIAKDTAVKLSKDEGDIQRCSHLQKELILAAIDSIDANSKTGGYLV 64

Query: 363 FSNCSL 368
           +S CS+
Sbjct: 65  YSTCSI 70


>gi|300868307|ref|ZP_07112935.1| N utilization substance protein B homolog [Oscillatoria sp. PCC
           6506]
 gi|300333687|emb|CBN58119.1| N utilization substance protein B homolog [Oscillatoria sp. PCC
           6506]
          Length = 210

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 7   ARLVSSHL--LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           AR +      L+     R+ +   L      +    +    +I    I+       P ID
Sbjct: 77  ARTMVHEAIELTQTAINRLGIALELPETIHLANQEDV----RIYALKILGTVSANRPAID 132

Query: 65  AVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
            +L   ++   + R     + ++R++VA+I++LD+ +   ++ A+E AKR   +  + + 
Sbjct: 133 ELLSAALVDWQIDRLPRIDRDIMRIAVAEIMFLDLPEQVGINEAIELAKRYSGDEGY-RF 191

Query: 124 VNSILRR 130
           +N +LRR
Sbjct: 192 INGVLRR 198


>gi|281357054|ref|ZP_06243544.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548]
 gi|281316612|gb|EFB00636.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548]
          Length = 170

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCL-----LDLEYGDSAFRL--LSQRDQILVRAIVNVTLRFL 60
           R ++   L     +    +        +      A +   L+++ +   + + N      
Sbjct: 21  RELAMQYLFRCDMRDELPSAATFGQFFEEVREQHALQENRLARKGREYAQQLYNNVAVHK 80

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             IDA +     +    R     + ++R++VA++LY  +V     +D AVE A+      
Sbjct: 81  EEIDATIQARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPVVSIDEAVEIARDYSGEA 140


>gi|238917018|ref|YP_002930535.1| N utilization substance protein B [Eubacterium eligens ATCC 27750]
 gi|238872378|gb|ACR72088.1| N utilization substance protein B [Eubacterium eligens ATCC 27750]
          Length = 135

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 23/138 (16%)

Query: 8   RLVSSHLLSC---VMRKRIS----------LTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54
           R     LL     +  K                +      +  +  +  +    +  ++ 
Sbjct: 2   REHIFKLLFRAPFIDNKDEYEEQINLYFADADMVDASHLKEEEYNYIKDKTLA-IAELI- 59

Query: 55  VTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAK 112
                 P +D  +D V       R   +   ++R++V ++LY  D+     ++ AVE AK
Sbjct: 60  ------PELDEKIDSVSEGWPTSRLGKTELSIMRLAVYEMLYDEDIPTNVALNEAVELAK 113

Query: 113 RDKENRHFAKLVNSILRR 130
           +       A  VN +L +
Sbjct: 114 KYGSADSTAAFVNGVLGK 131


>gi|169773281|ref|XP_001821109.1| NOL1/NOP2/sun domain protein [Aspergillus oryzae RIB40]
 gi|83768970|dbj|BAE59107.1| unnamed protein product [Aspergillus oryzae]
          Length = 557

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 40/134 (29%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL---------------RS 383
           K +  Q +++   +SF      + +S CS+   ++E VV+++L                 
Sbjct: 394 KLSNLQTRIVEHAMSFPAAT-RITYSTCSIHLTENESVVERLLTSEVAKRRGWRIMRRNE 452

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSP-----------------EGWIRITPDMLEKIDGV 426
            P  +          +S     + +                  EG +R  P         
Sbjct: 453 QPEGLRTWKHRGVRTESRGSGDSETQDGTQGAELKVDLSDEVLEGCLRCWPGD------- 505

Query: 427 SSGMDGFFAVALRR 440
             G+ GFF     R
Sbjct: 506 DEGLGGFFVAGFVR 519


>gi|258645389|ref|ZP_05732858.1| transcription antitermination factor NusB [Dialister invisus DSM
           15470]
 gi|260402739|gb|EEW96286.1| transcription antitermination factor NusB [Dialister invisus DSM
           15470]
          Length = 133

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 10/119 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S   AR  +  +L        +                LS++ +     +V         
Sbjct: 2   SRSKAREHALKVLYAKEINPNTAE------LSADISDALSEKGKSFSDFLVEQVQLHRDE 55

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL---DVADYAVVDLAVEQAKRDKEN 117
           ID  +   L   SL +     + +LR+++A+  Y          +++ AVE AK     
Sbjct: 56  IDGEIVRFLKKWSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVELAKVYGGE 114


>gi|225420435|ref|ZP_03762738.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
           DSM 15981]
 gi|225040922|gb|EEG51168.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
           DSM 15981]
          Length = 197

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 19/147 (12%)

Query: 3   SGMNARLVSSHLLSCVMR--KRISLTCLLDLEYGDSAFRLLSQR--------------DQ 46
           +    R     +L           +   L   +       +  +              D 
Sbjct: 2   TRRELREHCFKMLFSADFYPSAEEVKEQLKQYFNAPEEDDVDPKGDVTILHKVEIKEEDS 61

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVV 104
             +   V   +  +P ID  ++ V       R       +LR+++ ++ Y D + +   +
Sbjct: 62  RYLEKRVAGIMDKIPEIDGQINEVAAGWRTKRMGKVELTILRLALFEMKYDDSIPEKVAI 121

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRV 131
           + AVE AK+   +      VN IL + 
Sbjct: 122 NEAVELAKKFGGDES-PSFVNGILAKF 147


>gi|158336915|ref|YP_001518090.1| transcription antitermination protein NusB [Acaryochloris marina
           MBIC11017]
 gi|189035877|sp|B0C5Q2|NUSB_ACAM1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|158307156|gb|ABW28773.1| transcription antitermination protein NusB [Acaryochloris marina
           MBIC11017]
          Length = 205

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +     ++         ID +L+  ++   L R  +    LLR++VA++ YLD+ +   +
Sbjct: 113 RDYTLDLIGAVHHHRDEIDQILETSLVDWQLHRLAHIDANLLRLAVAEMKYLDIPNQVAI 172

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
           + +VE AK+        + +N +LRRV+R+
Sbjct: 173 NESVELAKKYSAEEG-HRFINGVLRRVTRQ 201


>gi|154341174|ref|XP_001566540.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063863|emb|CAM40053.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 749

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
                     Q  LL  G   ++PGG ++++ CS     +E VV++ L  +    E
Sbjct: 550 PSSSASLFALQSGLLDNGYRQLRPGGTLLYATCSYSYLQNEYVVRRFLERANAVAE 605


>gi|325295064|ref|YP_004281578.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065512|gb|ADY73519.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 140

 Score = 61.5 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 1   MKSG--MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           M +     AR  +  ++       +S   +    + D+     S+  + +   +   T+ 
Sbjct: 1   MTNRDKKKAREHAYLMMYQYDLGGLSPEEIAFNYWEDNKE---SEEIKQMATYLFKKTVE 57

Query: 59  FLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDK 115
            L  ID  +   L     + R     + +LRV+  +I         AV++ AV+ AK   
Sbjct: 58  NLKNIDIEISRHLKKGWLISRLMPMDRSILRVATYEISNESFSPIEAVINDAVDAAKFYG 117

Query: 116 ENRHFAKLVNSILRR 130
           E+    K +N+IL +
Sbjct: 118 EDEKSPKFINAILDK 132


>gi|258567232|ref|XP_002584360.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237905806|gb|EEP80207.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 547

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 87/316 (27%), Gaps = 95/316 (30%)

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQ-------LI 260
           ++S   + EG   +QD ++  P  L            ++D CAAPG KT           
Sbjct: 201 LLSTRAYKEGRIILQDKASCFPAYLLLGDKAAPWRGDLIDGCAAPGNKTTHLASLLFASG 260

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV------LVDA 314
            + + + +LD S  R + L+  +    +     +                      L+D 
Sbjct: 261 QTSSHIFSLDASPTRSKTLQKMVGIAGVKNRVTVLAGQDFLALDPRDPRFKKVTGLLLDP 320

Query: 315 PCSSTGTIRRHP-------------------DVLWTRDTDDI------------------ 337
            CS +G +RR                     +    +   D                   
Sbjct: 321 SCSGSGIVRREDVPQLALPEPSSRTARGSGSNPRKRKRKADDSLSATGESSATDNAENEP 380

Query: 338 ----------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---- 383
                      K +  Q +++     F      V +S CS+  Q++E VV +VLRS    
Sbjct: 381 VNGELDIARLTKLSNLQAQIVEHAFKF-PSATRVTYSTCSIHAQENENVVSRVLRSSTAR 439

Query: 384 -------------------SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
                                             +       +  +  +R +P       
Sbjct: 440 ERGWKILPRAEQVDGLRTWHHRGWLTGGHEPVEGEESWELTDIESDACLRCSPGD----- 494

Query: 425 GVSSGMDGFFAVALRR 440
             + G  GFF     R
Sbjct: 495 --AEGTGGFFVAGFVR 508


>gi|257413800|ref|ZP_04744265.2| transcription antitermination factor NusB [Roseburia intestinalis
           L1-82]
 gi|257202253|gb|EEV00538.1| transcription antitermination factor NusB [Roseburia intestinalis
           L1-82]
          Length = 146

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 4/130 (3%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R     +L  V            +   +       ++D+  +   V      L  
Sbjct: 17  TRREIREQVFKMLFRVEFYNQE-EMSEQIALCEDDACNWKEKDKTYIFEKVEKISEKLEE 75

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           IDA ++ V       R       L+R++V ++LY  DV     ++ AVE AK+     + 
Sbjct: 76  IDAKINEVSEGWKTGRMGKVDLTLIRLAVYEMLYEEDVPAKVAINEAVELAKQY-GTDNS 134

Query: 121 AKLVNSILRR 130
              VN +L +
Sbjct: 135 PSFVNGVLAK 144


>gi|75906501|ref|YP_320797.1| transcription antitermination protein NusB [Anabaena variabilis
           ATCC 29413]
 gi|119372276|sp|Q3MGI4|NUSB_ANAVT RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|75700226|gb|ABA19902.1| NusB antitermination factor [Anabaena variabilis ATCC 29413]
          Length = 211

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVL 67
           + ++L   +    +    L           L+ +D+        +V +       ID  +
Sbjct: 79  ARNMLQEAISHTQTAINQLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERGMIDEQI 138

Query: 68  -DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              ++   + R     + +LR++VA++++L++ +   ++ AVE AKR   +    + +N 
Sbjct: 139 TSALVDWQVTRLAQIDRDILRIAVAEMMFLNLPNSVAINEAVELAKRYSGDEG-HRFING 197

Query: 127 ILRR 130
           +LRR
Sbjct: 198 VLRR 201


>gi|307701058|ref|ZP_07638083.1| transcription antitermination factor NusB [Mobiluncus mulieris
           FB024-16]
 gi|307614053|gb|EFN93297.1| transcription antitermination factor NusB [Mobiluncus mulieris
           FB024-16]
          Length = 197

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 16/141 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-------ILVRAIVNV 55
           S   AR  +  +L     K       LD   G  +   L + +           R I+  
Sbjct: 7   SRTRARSRAVDVLYEAHLKD------LDDSAGIYSLAKLRETETTAQTPMPPYAREILEG 60

Query: 56  TLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
               L RIDA L       SL R       ++RV+  +IL+  DV     +  A++ A  
Sbjct: 61  VAEHLERIDAALATYSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLA-A 119

Query: 114 DKENRHFAKLVNSILRRVSRE 134
           ++      K +N +L  ++  
Sbjct: 120 ERSTDESPKFINGLLGTINDM 140


>gi|302670343|ref|YP_003830303.1| transcription antitermination factor NusB [Butyrivibrio
           proteoclasticus B316]
 gi|302394816|gb|ADL33721.1| transcription antitermination factor NusB [Butyrivibrio
           proteoclasticus B316]
          Length = 133

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 3/133 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R     LL  V           +  +        S+ D   +R         L  
Sbjct: 2   NRTELREQIFQLLFRVEFNSKEEMMEQEELFTTEGDLEFSKSDADYIRDKYEKIADKLEE 61

Query: 63  IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           ID  ++   +     R       ++R++V +I + + V     ++ AVE AK+       
Sbjct: 62  IDKAINEKAVGWETSRMAKVDLTIIRLAVYEIKFDETVPTGVAINEAVELAKKF-GQDGS 120

Query: 121 AKLVNSILRRVSR 133
              VN +L + ++
Sbjct: 121 PAFVNGVLAKFAQ 133


>gi|242778825|ref|XP_002479317.1| NOL1/NOP2/sun domain protein, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218722936|gb|EED22354.1| NOL1/NOP2/sun domain protein, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 546

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 31/149 (20%)

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           P     T +R        DT+ +VK +  Q  ++   ++F      V +S CS+   ++E
Sbjct: 370 PTEDESTKQREAQETNNMDTERLVKLSNLQTHIVEHALTFPAAT-RVTYSTCSIHILENE 428

Query: 375 EVVQKVL-----RSSPIPV---ELVPLNSAYWKSIDMAMALSP---------------EG 411
            VV++VL     +     +   +  P     W+   +     P               + 
Sbjct: 429 CVVERVLSSKIAKKRGWRIMRRDEQPRGLRKWRHRGIRSHNDPKSGDLTNVDLTEEEIDA 488

Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +R  P   E          GFF     R
Sbjct: 489 CLRCWPGDDEC-------TGGFFVAGFIR 510


>gi|168705385|ref|ZP_02737662.1| transcription antitermination protein NusB [Gemmata obscuriglobus
           UQM 2246]
          Length = 139

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 11  SSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLPRIDAVLD 68
              LL    +    +    +     D   RLL   +      ++ +        ID  L 
Sbjct: 2   VLQLLFQWDQNPTKVPRKAIQQFARD---RLLGDAEMSTYALSLYDGVAGRKDAIDEALK 58

Query: 69  FVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADY--AVVDLAVEQAKRDKENRHFAKLVN 125
               +  L R     + +LR+   ++L+         V++ A+E AKR   +      VN
Sbjct: 59  SAATNWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRF-GSEDSPAFVN 117

Query: 126 SILRR 130
            +L R
Sbjct: 118 GVLDR 122


>gi|169599092|ref|XP_001792969.1| hypothetical protein SNOG_02362 [Phaeosphaeria nodorum SN15]
 gi|160704533|gb|EAT90574.2| hypothetical protein SNOG_02362 [Phaeosphaeria nodorum SN15]
          Length = 1196

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 15/113 (13%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--- 397
           + FQ  +L   + F      + +S CS+  +++E VV + L SS        +       
Sbjct: 404 SNFQLHILTHAMRF-ASAHKITYSTCSIHFEENEGVVFQALASSIANKRGWKILKRERQV 462

Query: 398 -----------WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
                      W+   +   +       +    +    G   G  GFF  A  
Sbjct: 463 EGMKKWNRRGVWEDGKLNRDVDEAQKQDVLEACIRCDKGTDEGTMGFFVAAFV 515


>gi|296113998|ref|YP_003627936.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis RH4]
 gi|295921692|gb|ADG62043.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis RH4]
 gi|326565100|gb|EGE15293.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 46P47B1]
 gi|326567268|gb|EGE17388.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 12P80B1]
 gi|326568226|gb|EGE18308.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC8]
 gi|326569926|gb|EGE19973.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC1]
 gi|326573689|gb|EGE23647.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis O35E]
          Length = 175

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 12/136 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55
            AR  +   L   +              G +    ++ R +               ++  
Sbjct: 27  KARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRADNAMHTVHLGYYHELMRN 86

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
               +  +++++   L   L +       +L +   ++ + L +    V+D A++     
Sbjct: 87  IPAQIDELESLIVSQLDRELSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMKL-NVH 145

Query: 115 KENRHFAKLVNSILRR 130
                  KL+N+++ +
Sbjct: 146 FGATDAHKLINAVMDK 161


>gi|163793217|ref|ZP_02187193.1| NusB antitermination factor [alpha proteobacterium BAL199]
 gi|159181863|gb|EDP66375.1| NusB antitermination factor [alpha proteobacterium BAL199]
          Length = 139

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 9/121 (7%)

Query: 18  VMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
           +     S   ++    G           ++  D      +V      +P +D +L   L 
Sbjct: 1   MEVSGKSGHEVVPEFVGRRFAGLIEGGDMAPADPKFFERLVLGVAGEMPTLDGMLADCLQ 60

Query: 73  SS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
               L R +  L+ + R+   ++L   DV    V+   V+        R    LVN +L 
Sbjct: 61  PEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGRE-PGLVNGVLD 119

Query: 130 R 130
           +
Sbjct: 120 K 120


>gi|322707142|gb|EFY98721.1| NOL1/NOP2/sun domain protein [Metarhizium anisopliae ARSEF 23]
          Length = 587

 Score = 61.1 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 9/107 (8%)

Query: 341 ACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVL------RSSPIPVELVPL 393
           A FQ  +LL    F  P    V +S CS+  Q++E VV   L            +     
Sbjct: 396 AGFQLTILLHAFRF--PSARKVTYSTCSIHSQENEHVVMAALNSDVAKERGWRILRRKDQ 453

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            +            +  G   +    +        G+ GFF     R
Sbjct: 454 VTGMKDWPVRGSTEACNGDEEVAQGCIRCYKDDGHGIMGFFVAGFVR 500


>gi|119510389|ref|ZP_01629523.1| transcription antitermination protein NusB [Nodularia spumigena
           CCY9414]
 gi|119464918|gb|EAW45821.1| transcription antitermination protein NusB [Nodularia spumigena
           CCY9414]
          Length = 209

 Score = 61.1 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVL 67
           + +LL   +    +    L           L+ +D+        +V +       ID  +
Sbjct: 79  ARNLLKEAIDYTQTAINQLGAAVEFPELIQLANQDKEVGRYAIQLVKLVNEHRVSIDEEI 138

Query: 68  DFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              L    + R     + +LR++V ++ + ++ D   ++ AVE AKR   +    + +N 
Sbjct: 139 SSALVDWQVTRLAQIDRDILRIAVGEMRFFNLPDRVAINEAVELAKRYSGDEG-HRFING 197

Query: 127 ILRRVSRE 134
           +LRRV+ +
Sbjct: 198 VLRRVTEQ 205


>gi|253581940|ref|ZP_04859164.1| N utilization substance protein B [Fusobacterium varium ATCC 27725]
 gi|251836289|gb|EES64826.1| N utilization substance protein B [Fusobacterium varium ATCC 27725]
          Length = 132

 Score = 61.1 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR     L+     K  +   +L+           ++ +   ++  +N      
Sbjct: 1   MSRRL-AREELFKLVFEGEIKEENTKDILESYLNREEILQ-NENEIAFIKKYMNGIAENN 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            +I  V++  +   S  R     + LL++SV +IL  D     V++ AVE AK    +  
Sbjct: 59  DKILKVIEEKITGWSFERIGNVEKALLKISVYEILCEDTPYEIVINEAVELAK-IYGDEK 117

Query: 120 FAKLVNSILRRVSRE 134
            ++ +N +L ++   
Sbjct: 118 TSEFLNGVLAKIVNN 132


>gi|326559289|gb|EGE09716.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 7169]
 gi|326564337|gb|EGE14567.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 103P14B1]
 gi|326570003|gb|EGE20049.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis BC7]
 gi|326572862|gb|EGE22847.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis CO72]
 gi|326574686|gb|EGE24622.1| transcription termination/antitermination protein NusB [Moraxella
           catarrhalis 101P30B1]
          Length = 175

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 12/136 (8%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55
            AR  +   L   +              G +    ++ R +               ++  
Sbjct: 27  KARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRADNAMHTVHLGYYHELMRN 86

Query: 56  TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
               +  +++++   L   L +       +L +   ++ + L +    V+D A++     
Sbjct: 87  IPAQIDELESLIVSQLDRELSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMKL-NVH 145

Query: 115 KENRHFAKLVNSILRR 130
                  KL+N+++ +
Sbjct: 146 FGATDAHKLINAVMDK 161


>gi|66357878|ref|XP_626117.1| nclip/MJ0026/YebU-like; SUN family methylase [Cryptosporidium
           parvum Iowa II]
 gi|46227134|gb|EAK88084.1| nclip/MJ0026/YebU-like; SUN family methylase [Cryptosporidium
           parvum Iowa II]
          Length = 374

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 26/189 (13%)

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDV 271
           E   +  DA++ I   L       +VLDLC+APGGK           +   G K     +
Sbjct: 90  EKCIYFMDAASIIVSYLLDIDRFSTVLDLCSAPGGKALIIIKRILEDINKHGEKDKMCHI 149

Query: 272 SKRRLEKLRCNLDRLHLY-----------AEDIIEMDAFDYC------PKKLFDAVLVDA 314
           +    +K R +     L                I  DA           +  F  +LVDA
Sbjct: 150 TCNEYDKGRFSRLNKVLQSHIGSFDLNRVNAVTISNDATSPSLLYSLRKQSRFLKILVDA 209

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCSS   +    D           +++  Q +++   I  ++  GI+++  C+L++ +++
Sbjct: 210 PCSSDRHLILSNDFKH-WSIKLAKRNSERQAEIINNAIGLLQDNGIILYCTCTLNEIEND 268

Query: 375 EVVQKVLRS 383
             V+++  +
Sbjct: 269 YTVERICNN 277


>gi|256077816|ref|XP_002575196.1| hypothetical protein [Schistosoma mansoni]
 gi|238660427|emb|CAZ31429.1| conserved hypothetical protein [Schistosoma mansoni]
          Length = 709

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 302 CPKKLFDAVLVDAPCS--STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                F+ +LV+ PCS            V          +    Q  LL Q +   +P G
Sbjct: 541 DKDYKFNKILVNVPCSADRYAITSGDSHVFGMGQARLRAQLPKIQLNLLRQAMELCQPNG 600

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            VV+S  +L    ++E++Q  + +    +    +N       D+  A   +  I++ P  
Sbjct: 601 YVVYSTSTLSPSQNQEIIQSFILNHSNNINFALINLK--PLYDLLTACYSKLGIKVIPIH 658

Query: 420 LEKIDGVSSGM 430
           L   D  ++ M
Sbjct: 659 LPLFDNNNNNM 669


>gi|323509357|dbj|BAJ77571.1| cgd5_1730 [Cryptosporidium parvum]
          Length = 366

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 26/189 (13%)

Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDV 271
           E   +  DA++ I   L       +VLDLC+APGGK           +   G K     +
Sbjct: 90  EKCIYFMDAASIIVSYLLDIDRFSTVLDLCSAPGGKALIIIKRILEDINKHGEKDKMCHI 149

Query: 272 SKRRLEKLRCNLDRLHLY-----------AEDIIEMDAFDYC------PKKLFDAVLVDA 314
           +    +K R +     L                I  DA           +  F  +LVDA
Sbjct: 150 TCNEYDKGRFSRLNKVLQSHIGSFDLNRVNAVTISNDATSPSLLYSLRKQSRFLKILVDA 209

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
           PCSS   +    D           +++  Q +++   I  ++  GI+++  C+L++ +++
Sbjct: 210 PCSSDRHLILSNDFKH-WSIKLAKRNSERQAEIINNAIGLLQDNGIILYCTCTLNEIEND 268

Query: 375 EVVQKVLRS 383
             V+++  +
Sbjct: 269 YTVERICNN 277


>gi|194209212|ref|XP_001494833.2| PREDICTED: NOL1/NOP2/Sun domain family, member 7 [Equus caballus]
          Length = 479

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 114/387 (29%), Gaps = 44/387 (11%)

Query: 51  AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110
            +    L++   ++ +L    I         L  L+ V +            ++    E 
Sbjct: 96  ELAFSALKYQDILETILIDSYIFPSTTIPDHLSSLIIVMLYD-FQDRKFQARLLSDNEES 154

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
               +E  +      + L             ++   I+PE  +        +   L +  
Sbjct: 155 IAEVQEVENLLISFKTKLAAALARYRIKHDALSIYHILPETVRN----QELRASTLPLYA 210

Query: 171 ACISPLYIDLTVKFDIET-----------WAHKLNAVMLPTGGIRLKELP--ESIVSLPG 217
              +       V   ++               K+ AV      + +        ++++  
Sbjct: 211 WINTCKISPEEVYHSLKKKGYHKVKSVPHIGDKVFAVDQHCYDVLIFPSHLKNDLLNIDL 270

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-------SGAKVTALD 270
           F E     QD S S+ V     L N+    L    G       +       +        
Sbjct: 271 FKEYKLIFQDKSRSLAVHSIKALLNMDDDILMVNTGSWYTVAHMSVLTNNNTSKIFVCGV 330

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR--- 323
            S+ +  KL     ++     +I+     +   K    +    +L+   CS  G      
Sbjct: 331 QSQAKDPKLMNLFTKMGCKNVEILPETFINIDSKDHRLQKVKVILLLPRCSGLGVSNPVE 390

Query: 324 ----RHPDVLWTR-------DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
                H D    +         D +   A  Q + L   + F K    VV+  CS+  ++
Sbjct: 391 FILNEHEDTGLLKDFSQGGTSEDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVYPEE 449

Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWK 399
           +E VV+K L      +++ P +  + +
Sbjct: 450 NEAVVKKALEFQDHGIKVQPYSGTHLR 476


>gi|134301537|ref|YP_001121505.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134049314|gb|ABO46385.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 141

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++  L+     ++   VE      
Sbjct: 59  KTNQDTIDKYIKENSSNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   +N++L+ 
Sbjct: 119 TEEGYK-FINAVLQN 132


>gi|254368862|ref|ZP_04984875.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121783|gb|EDO65953.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 141

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++  L+     ++   VE      
Sbjct: 59  KTNQDTIDKYIKENSSNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   +N++L+ 
Sbjct: 119 TEEGYK-FINAVLQN 132


>gi|323509071|dbj|BAJ77428.1| cgd7_4130 [Cryptosporidium parvum]
          Length = 505

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            + Y        V+V  P  S   + +H  V        +   + FQ K+L+  +S  + 
Sbjct: 359 WYHYKNTISNLRVIVLDPSCSGSGLPQHGKVESVNIEKRLKSLSEFQTKMLIHSLSSFQS 418

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIR 414
              V +S CS+  +++E+VV   L        L   + +    W++ + +   S  G I 
Sbjct: 419 VETVCYSTCSIFTEENEQVVLNSLEKCKNSGNLQFSLEIALENWENPNRSYQDSSFGEIY 478

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
                   ++  +    GFF     +
Sbjct: 479 ---KKCIFVNSETHNCRGFFLAKFVK 501


>gi|269977328|ref|ZP_06184301.1| putative N utilization substance B-like protein [Mobiluncus
           mulieris 28-1]
 gi|269934631|gb|EEZ91192.1| putative N utilization substance B-like protein [Mobiluncus
           mulieris 28-1]
          Length = 197

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 16/141 (11%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-------ILVRAIVNV 55
           S   AR  +  +L     K       LD   G  +   L + +           R I+  
Sbjct: 7   SRTRARSRAVDVLYEAHLKD------LDDSAGIYSLAKLRETETTAQTPMPPYAREILEG 60

Query: 56  TLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113
               L RIDA L       SL R       ++RV+  +IL+  DV     +  A++ A  
Sbjct: 61  VAEHLDRIDAALATYSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLA-A 119

Query: 114 DKENRHFAKLVNSILRRVSRE 134
           ++      K +N +L  ++  
Sbjct: 120 ERSTDESPKFINGLLGTINDM 140


>gi|66363206|ref|XP_628569.1| Ynl022cp-like. SUN family methylase [Cryptosporidium parvum Iowa
           II]
 gi|46229823|gb|EAK90641.1| Ynl022cp-like. SUN family methylase [Cryptosporidium parvum Iowa
           II]
          Length = 508

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            + Y        V+V  P  S   + +H  V        +   + FQ K+L+  +S  + 
Sbjct: 362 WYHYKNTISNLRVIVLDPSCSGSGLPQHGKVESVNIEKRLKSLSEFQTKMLIHSLSSFQS 421

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIR 414
              V +S CS+  +++E+VV   L        L   + +    W++ + +   S  G I 
Sbjct: 422 VETVCYSTCSIFTEENEQVVLNSLEKCKNSGNLQFSLEIALENWENPNRSYQDSSFGEIY 481

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440
                   ++  +    GFF     +
Sbjct: 482 ---KKCIFVNSETHNCRGFFLAKFVK 504


>gi|332678675|gb|AEE87804.1| Transcription termination protein NusB [Francisella cf. novicida
           Fx1]
          Length = 141

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKVQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++  L+     ++   VE      
Sbjct: 59  KTNQDTIDKYIKENSSNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   +N++L+ 
Sbjct: 119 TEEGYK-FINAVLQN 132


>gi|33519701|ref|NP_878533.1| transcription antitermination protein NusB [Candidatus Blochmannia
           floridanus]
 gi|39931819|sp|Q7VRI1|NUSB_BLOFL RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|33504046|emb|CAD83307.1| transcription termination; L factor [Candidatus Blochmannia
           floridanus]
          Length = 138

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 7/133 (5%)

Query: 1   MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK  +   ARL +   L      +   T + +        +  +         +    + 
Sbjct: 1   MKSITRRFARLCALQALYAWQLSKNDYTMISNYVIKIQNIQNFN---ISYFLTLYIGVIH 57

Query: 59  FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117
            +  ++ ++   L   L    Y    +L +++ ++    DV    V++ A+E AK    +
Sbjct: 58  TIKELNTLMIPYLSRGLKAIDYIEYSVLLIALFELTQCCDVPYKVVINEAIELAK-IFGS 116

Query: 118 RHFAKLVNSILRR 130
               K +N +L +
Sbjct: 117 EKSHKFINGVLDK 129


>gi|256028476|ref|ZP_05442310.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
 gi|289766397|ref|ZP_06525775.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
 gi|289717952|gb|EFD81964.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
          Length = 157

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
           AR     L+        S   L    ++   +       LS++    ++  +N  +    
Sbjct: 19  AREEVFKLVFGAELTGSSSDELKQDFNIYLQNDEEFINALSEKQLEFIKNSINGIVENYD 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  ++     +    R     + LL V   + L  +     + +  VE AK    N   
Sbjct: 79  NIKDIIKKNTQNWTYERIGVIERSLLIVGTYEFLIKNTPIEVIANEIVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + +N IL  
Sbjct: 138 YEFINGILAN 147


>gi|313233344|emb|CBY24458.1| unnamed protein product [Oikopleura dioica]
          Length = 196

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 16/149 (10%)

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
               E   F       +  VL+ AP S          +L         ++A  Q   L+ 
Sbjct: 61  VTGWEAVKFGVAEASTYSKVLLVAPSSDEKVTFMDEKLLKKWTDKVTRQNAKKQLLNLIS 120

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410
            +S  + GG V +   S+   +++EVV+K L+ S      + +++   ++         +
Sbjct: 121 ALSATESGGTVFYVTKSMSPFENDEVVEKALKKSRTEPVAIKISTKLGRAT--------K 172

Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALR 439
             I+I P                +   L+
Sbjct: 173 YGIQILPHEAPFGPL--------YVSKLK 193


>gi|315656698|ref|ZP_07909585.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492653|gb|EFU82257.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 191

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 8   RLVSSHLLSCVMRKRISLTC---LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           R+ +  +L     +          L     D                I+      L RID
Sbjct: 12  RVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLP--AYAVEILEGVAEHLERID 69

Query: 65  AVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           A L        L R       ++RV+  +IL+  DV     +  A++ A+    +  
Sbjct: 70  AALATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERSTDES 126


>gi|206890845|ref|YP_002249638.1| transcription antitermination factor NusB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226738908|sp|B5YHQ2|NUSB_THEYD RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|206742783|gb|ACI21840.1| transcription antitermination factor NusB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 151

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 13/149 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRI--------SLTCLLDLEYGDSAFRLLSQRDQILVRAI 52
           MK    AR      L                 L   ++  +  + +   +   +     +
Sbjct: 1   MK-RRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERN-YEEQNSDIKSFANQL 58

Query: 53  VNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110
           +  T+  +  ID ++        + R     + +LR S+ +ILY  D+     ++ AVE 
Sbjct: 59  IEGTIEHIDIIDKIIQKYADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEI 118

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELL 139
           AK+    +  A  +N IL R+++E+I   
Sbjct: 119 AKKY-STKESAAFINGILDRIAKEEICHN 146


>gi|255325060|ref|ZP_05366166.1| transcription antitermination protein NusB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297625|gb|EET76936.1| transcription antitermination protein NusB [Corynebacterium
           tuberculostearicum SK141]
          Length = 221

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 5/135 (3%)

Query: 13  HLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
            +L     + +  +  + D        R          + IV      L  ID  +   L
Sbjct: 27  DILYEAENRDVDPVAIVEDRIALAREDRNAVAPVAEYTQVIVKGVAEELDAIDDTISRFL 86

Query: 72  --ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                L R     + +LR+SV ++L+  D+     V   VE A     N   A  ++++L
Sbjct: 87  AEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIA-SQYSNDQAAPYIHAVL 145

Query: 129 RRVSREKIELLQRIA 143
             V++ +       A
Sbjct: 146 DDVAQSRSAENPMSA 160


>gi|315655389|ref|ZP_07908289.1| transcription antitermination protein NusB [Mobiluncus curtisii
           ATCC 51333]
 gi|315490329|gb|EFU79954.1| transcription antitermination protein NusB [Mobiluncus curtisii
           ATCC 51333]
          Length = 191

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 8   RLVSSHLLSCVMRKRISLTC---LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           R+ +  +L     +          L     D                I+      L RID
Sbjct: 12  RVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLP--AYAVEILEGVAEHLERID 69

Query: 65  AVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           A L        L R       ++RV+  +IL+  DV     +  A++ A+    +  
Sbjct: 70  AALATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERSTDES 126


>gi|56751642|ref|YP_172343.1| transcription antitermination protein NusB [Synechococcus elongatus
           PCC 6301]
 gi|81301280|ref|YP_401488.1| transcription antitermination protein NusB [Synechococcus elongatus
           PCC 7942]
 gi|34222700|sp|Q8GIR7|NUSB_SYNE7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|81561842|sp|Q5N1J7|NUSB_SYNP6 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|25019707|gb|AAN71793.1| unknown [Synechococcus elongatus PCC 7942]
 gi|56686601|dbj|BAD79823.1| N utilization substance protein B [Synechococcus elongatus PCC
           6301]
 gi|81170161|gb|ABB58501.1| transcription antitermination factor NusB [Synechococcus elongatus
           PCC 7942]
          Length = 213

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFLPRIDAVLDFVL 71
           +L  V+    +             +  L+ R+  +     +V        RID  L+ V+
Sbjct: 79  MLQEVIEMAQAAINRTGNALDLPEWVQLTDREEVRKFGGRLVLQVSNNRERIDRTLNDVM 138

Query: 72  -ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
               L R     Q +LR++ A+IL+L   +   ++ AVE A R  +   
Sbjct: 139 VDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEG 187


>gi|311739520|ref|ZP_07713355.1| N utilization substance protein B [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305336|gb|EFQ81404.1| N utilization substance protein B [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 221

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 5/135 (3%)

Query: 13  HLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
            +L     + +  +  + D        R          + IV      L  ID  +   L
Sbjct: 27  DILYEAENRDVDPVAIVEDRIALAREDRNAVAPVAEYTQVIVKGVAEELDAIDDTISRFL 86

Query: 72  --ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                L R     + +LR+SV ++L+  D+     V   VE A     N   A  ++++L
Sbjct: 87  AEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIA-SQYSNDQAAPYIHAVL 145

Query: 129 RRVSREKIELLQRIA 143
             V++ +       A
Sbjct: 146 DDVAQSRSAENPMSA 160


>gi|126331805|ref|XP_001373427.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 774

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/473 (11%), Positives = 137/473 (28%), Gaps = 58/473 (12%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67
           ++++   +  ++     +L     +    L    D   Q L   +    L++   ++++L
Sbjct: 55  AANIFQGIKIEKAP-DKVLVRYGNEPVLSLPDFEDEQSQRLSYELAFSALKYQDILESIL 113

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
                        +L  L+ V +    + D    + +    +     +E  +      + 
Sbjct: 114 IDSCFYPNVSIPDALTSLVVVMLYD--FQDRKFQSRLISNEQAISEVQEVENLLNSFKTK 171

Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187
           L             ++   I+PE  +++          L            D+      E
Sbjct: 172 LAAALARCRIKHDALSIYHILPETVRKQ--EQRASTLPLYAWINTCKISPEDICDDLMKE 229

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPG------------------FAEGVWWVQDAS 229
            +    +A  L      + +    ++  P                   F +    +   S
Sbjct: 230 GFIRVKSAFDLDCKSFCMDQHCSDVLIFPSHLKSELLNIELCTEYKLLFQDKSRSLAVHS 289

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
               + +   +  +++          T     +         S+ +  +++     +   
Sbjct: 290 VKTLLNMDDDILLVNMGSWYTVAHMSTLTNQSTSKIYVCGVKSQAKESEMKELFTNMGCK 349

Query: 290 AEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRD----- 333
             +++  +  D   K    +    +L+   CS  G           + D    +D     
Sbjct: 350 NIELLHENFIDIETKDQRLQKVKVILLLPRCSGLGVSNPIEFILNENEDADLLKDHSQGS 409

Query: 334 --TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIPV 388
              D +      Q + L   + F K    +V+  CS+  +++E VV+K L         V
Sbjct: 410 IAEDKLHILVEQQYEQLKHAMKFTKAQA-IVYCTCSVYPEENEAVVKKALELGVEGNNKV 468

Query: 389 ELVPLNSAYWKSIDMAM-ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
           +   L+        +     S + + ++ P  +          +G F   L R
Sbjct: 469 QPYRLSPPVLPLCSVKEIHSSTDKFFKVEPSEI---------TNGCFLAVLTR 512


>gi|42520134|ref|NP_966049.1| N utilization substance protein B, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|58698971|ref|ZP_00373826.1| transcription antitermination factor NusB [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225630058|ref|YP_002726849.1| N utilization substance protein B, putative [Wolbachia sp. wRi]
 gi|42409871|gb|AAS13983.1| N utilization substance protein B, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|58534511|gb|EAL58655.1| transcription antitermination factor NusB [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225592039|gb|ACN95058.1| N utilization substance protein B, putative [Wolbachia sp. wRi]
          Length = 160

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 9/137 (6%)

Query: 3   SGMNARLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVNV 55
               AR ++  +    +       T  L+          L         +   +  ++  
Sbjct: 13  KRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECEEFEHQFLENLLYK 72

Query: 56  TLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            ++     D +++  L    SL R       +LRV++ ++   D     V++     A  
Sbjct: 73  VIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRVAICELANCDTPVPVVINEYTNIASD 132

Query: 114 DKENRHFAKLVNSILRR 130
             +       +N +L +
Sbjct: 133 LLDKPSEIGFINGLLDK 149


>gi|159131813|gb|EDP56926.1| NOL1/NOP2/sun domain protein, putative [Aspergillus fumigatus
           A1163]
          Length = 559

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 91/382 (23%), Gaps = 96/382 (25%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
              R          +          Y  +    ++         V      +        
Sbjct: 147 VYPRWVRINNLRTTMEEQLQSTFKSYTRVNSLAELGEKDEAKLYVDPHVPDLVAVAPGVD 206

Query: 212 IVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQL--------- 259
             S P +  G   +QD ++  P           +  +LD CAAPG KT  +         
Sbjct: 207 FTSSPAYKNGQIILQDKASCFPAYLLLGDSEDWSGDLLDGCAAPGNKTTHMASLLAKHAA 266

Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV------LV 312
                  + ++D SK R + L+  +          +             +        L+
Sbjct: 267 GRDVTRHIVSMDASKVRSKTLQKMVSAAGADNIVTVLQGQDFLALDPTEERFANVTGLLL 326

Query: 313 DAPCSSTGTIRRHP-----------------DVLWTRDTDDIV----------------- 338
           D  CS +G + R                        +   D                   
Sbjct: 327 DPSCSGSGIVGRDDVPKLALPAAASTPTSKSQGKKRKRRHDDEEETQPGNAAAATSTSAS 386

Query: 339 ------------------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
                             K +  Q +++   +SF      V +S CS+   ++E VV +V
Sbjct: 387 ATDENEIASATLDRDRLTKLSNLQARIVEHALSFPAAT-RVTYSTCSIHLIENEAVVSRV 445

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI----------------------TPD 418
           L S         +     +   M     P   +R                          
Sbjct: 446 LASDVARSRGWRIMRREEQPRGMKAW--PHRGVRTESRYGDVKGDGEATPVDLSDEELEA 503

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
            L        G+ GFF     R
Sbjct: 504 CLRCWADDEEGLGGFFVAGFVR 525


>gi|70996644|ref|XP_753077.1| NOL1/NOP2/sun domain protein [Aspergillus fumigatus Af293]
 gi|66850712|gb|EAL91039.1| NOL1/NOP2/sun domain protein, putative [Aspergillus fumigatus
           Af293]
          Length = 559

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 91/382 (23%), Gaps = 96/382 (25%)

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
              R          +          Y  +    ++         V      +        
Sbjct: 147 VYPRWVRINNLRTTMEEQLQSTFKSYTRVNSLAELGEKDEAKLYVDPHVPDLVAVAPGVD 206

Query: 212 IVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQL--------- 259
             S P +  G   +QD ++  P           +  +LD CAAPG KT  +         
Sbjct: 207 FTSSPAYKNGQIILQDKASCFPAYLLLGDSEDWSGDLLDGCAAPGNKTTHMASLLAKHAA 266

Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV------LV 312
                  + ++D SK R + L+  +          +             +        L+
Sbjct: 267 GRDVTRHIVSMDASKVRSKTLQKMVSAAGADNIVTVLQGQDFLALDPTEERFANVTGLLL 326

Query: 313 DAPCSSTGTIRRHP-----------------DVLWTRDTDDIV----------------- 338
           D  CS +G + R                        +   D                   
Sbjct: 327 DPSCSGSGIVGRDDVPKLALPAAASTPTSKSQGKKRKRRHDDEEETQPGNAAAATSTSAS 386

Query: 339 ------------------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380
                             K +  Q +++   +SF      V +S CS+   ++E VV +V
Sbjct: 387 ATDENEIASATLDRDRLTKLSNLQARIVEHALSFPAAT-RVTYSTCSIHLIENEAVVSRV 445

Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI----------------------TPD 418
           L S         +     +   M     P   +R                          
Sbjct: 446 LASDVARSRGWRIMRREEQPRGMKAW--PHRGVRTESRYGDVKGDGEATPVDLSDEELEA 503

Query: 419 MLEKIDGVSSGMDGFFAVALRR 440
            L        G+ GFF     R
Sbjct: 504 CLRCWADDEEGLGGFFVAGFVR 525


>gi|317484770|ref|ZP_07943669.1| transcription antitermination factor NusB [Bilophila wadsworthia
           3_1_6]
 gi|316923977|gb|EFV45164.1| transcription antitermination factor NusB [Bilophila wadsworthia
           3_1_6]
          Length = 146

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVV 104
                +V      +  +D+V++    +  + R       LLR++V ++LY  DV     +
Sbjct: 44  GFAWELVEGVWSNVKNLDSVIERFSQNWRVDRLGKIELTLLRLAVFEMLYRADVPPKVAI 103

Query: 105 DLAVEQAKRDKENRHFAKLVNSILR 129
           + A+E + R   +      +N IL 
Sbjct: 104 NEALELSTRF-GDAKAKSFINGILD 127


>gi|303272885|ref|XP_003055804.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463778|gb|EEH61056.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 616

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 92/305 (30%), Gaps = 53/305 (17%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
                          + +      + +      G   +Q  S+  P    G      V+D
Sbjct: 246 ALGAFEYHADPHVPNLVVAPPGTDLHAHAMVKRGELILQGKSSCFPAVALGARAGWHVVD 305

Query: 248 LCAAPGGKTAQLIVS-----------------GAKVTALDVSKRRLEKLRCNLDRLHLYA 290
            CAAPG K   +                    G +V A D  + RL +L+ N+       
Sbjct: 306 ACAAPGNKVRSIHWFPYDRVGETTHVAAVVGAGGRVFAFDADRARLRRLKANVASAGAGE 365

Query: 291 EDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI-------- 337
             +   + F     +        AVL+D  CS +GT     D L      D+        
Sbjct: 366 IVVARCEDFLSVDVNDPEYAEVRAVLLDPSCSGSGTSGTRGDYLLAAARGDVVGGSGADV 425

Query: 338 ---------------VKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVL 381
                             A FQ K LL  +SF  P    V +S CS+   ++E VV+ V 
Sbjct: 426 AGGSGADVAPPDARVAALAAFQTKALLHALSF--PSAERVSYSTCSVHALENERVVKTV- 482

Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALR 439
             +P  +EL         +       S    +        L + D      +GFF     
Sbjct: 483 --APRALELGYTLEKALPAWHRRGLESESAGLEAIGGAECLVRADQREDDCEGFFVAVFA 540

Query: 440 RLIQP 444
           R   P
Sbjct: 541 RPPPP 545


>gi|118497958|ref|YP_899008.1| transcription termination factor [Francisella tularensis subsp.
           novicida U112]
 gi|194323181|ref|ZP_03056965.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. novicida FTE]
 gi|118423864|gb|ABK90254.1| transcription termination factor [Francisella novicida U112]
 gi|194322545|gb|EDX20025.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. novicida FTE]
          Length = 141

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++  L+     ++   VE      
Sbjct: 59  KTNQDTIDKYIKENSNNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   +N++L+ 
Sbjct: 119 TEEGYK-FINAVLQN 132


>gi|148705820|gb|EDL37767.1| NOL1/NOP2/Sun domain family, member 7, isoform CRA_d [Mus musculus]
          Length = 715

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/437 (12%), Positives = 134/437 (30%), Gaps = 46/437 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66
           ++++   +  +R     +++        S+ R   +  Q L   +   TL++   ++++ 
Sbjct: 79  AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 138

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D  + SS       L  L+ V +            ++    E     +E  +      +
Sbjct: 139 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 196

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
            L             ++   I+PE  +++ +          I+ + IS   +   ++   
Sbjct: 197 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 256

Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237
                 I +   K+ AV      + +        ++++    +     QD S S+ V   
Sbjct: 257 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 316

Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L N+    L    G               +          + +    R    R+    
Sbjct: 317 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 376

Query: 291 EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +I+         K     +  ++      +     +P         +  +    Q    
Sbjct: 377 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFIL----NEHEVTKVQA--- 429

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP---LNSAYWKSIDMAM 405
                       +V+  CS+ K+++E+VV+K L      V++ P               +
Sbjct: 430 ------------IVYCTCSVSKEENEDVVEKALEYQSSGVKMQPYRLSPPVLPLCTLKEI 477

Query: 406 ALSPEGWIRITPDMLEK 422
            LS + + R+ P  +  
Sbjct: 478 ELSMDRFFRLEPSDMNN 494


>gi|26330482|dbj|BAC28971.1| unnamed protein product [Mus musculus]
          Length = 691

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/437 (12%), Positives = 134/437 (30%), Gaps = 46/437 (10%)

Query: 11  SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66
           ++++   +  +R     +++        S+ R   +  Q L   +   TL++   ++++ 
Sbjct: 55  AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 114

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           +D  + SS       L  L+ V +            ++    E     +E  +      +
Sbjct: 115 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 172

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184
            L             ++   I+PE  +++ +          I+ + IS   +   ++   
Sbjct: 173 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 232

Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237
                 I +   K+ AV      + +        ++++    +     QD S S+ V   
Sbjct: 233 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 292

Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
             L N+    L    G               +          + +    R    R+    
Sbjct: 293 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 352

Query: 291 EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348
            +I+         K     +  ++      +     +P         +  +    Q    
Sbjct: 353 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFIL----NEHEVTKVQA--- 405

Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP---LNSAYWKSIDMAM 405
                       +V+  CS+ K+++E+VV+K L      V++ P               +
Sbjct: 406 ------------IVYCTCSVSKEENEDVVEKALEYQSSGVKMQPYRLSPPVLPLCTLKEI 453

Query: 406 ALSPEGWIRITPDMLEK 422
            LS + + R+ P  +  
Sbjct: 454 ELSMDRFFRLEPSDMNN 470


>gi|254373311|ref|ZP_04988799.1| N utilisation substance protein B [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374776|ref|ZP_04990257.1| N utilization substance protein B [Francisella novicida GA99-3548]
 gi|151571037|gb|EDN36691.1| N utilisation substance protein B [Francisella novicida GA99-3549]
 gi|151572495|gb|EDN38149.1| N utilization substance protein B [Francisella novicida GA99-3548]
          Length = 141

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKVQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++  L+     ++   VE      
Sbjct: 59  KTNQDTIDKYIKENSNNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   +N++L+ 
Sbjct: 119 TEEGYK-FINAVLQN 132


>gi|304389451|ref|ZP_07371414.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327261|gb|EFL94496.1| transcription antitermination factor NusB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 191

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 8   RLVSSHLLSCVMRKRISLTC---LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           R+ +  +L     +          L     D                I+      L RID
Sbjct: 12  RIRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLP--AYAVEILEGVAEHLERID 69

Query: 65  AVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           A L        L R       ++RV+  +IL+  DV     +  A++ A+    +  
Sbjct: 70  AALATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERSTDES 126


>gi|319941815|ref|ZP_08016137.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804748|gb|EFW01615.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis
           3_1_45B]
          Length = 173

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 16/137 (11%)

Query: 2   KSGMNARLVSSHLLSCVM----------RKRISLTCLLDLEYGDSAFRLLSQRD-----Q 46
                AR+ +       +           + +      D E        L+  D     +
Sbjct: 13  APRHLARVFALLGFYQWIADPTLKAQKIEENLPALLADDEEGTPVEDLGLTSEDWARCDR 72

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
            L+  +++  +     ++A     +   L R     + +L +   ++L         V++
Sbjct: 73  ELLTTLLSGAIGEHAALEAEFSSFVDRDLKRVSLVERAILFIGTYELLRCPQTPYRVVLN 132

Query: 106 LAVEQAKRDKENRHFAK 122
             +E AK       F  
Sbjct: 133 ETIELAKHFGSGYRFTN 149


>gi|302387570|ref|YP_003823392.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
 gi|302198198|gb|ADL05769.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
          Length = 147

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 40  LLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-D 97
            +S+ +   +R      +  +P +D  ++ V       R   +   +LR+++ +IL+  D
Sbjct: 54  DMSEENAAYLRERAESVMARIPELDLKINEVAEGWKTKRMGKAELTILRLALYEILFDED 113

Query: 98  VADYAVVDLAVEQAKRDKENRHFA 121
           V +   ++ AVE AK+   N   A
Sbjct: 114 VPEKVAINEAVELAKKYGGNEAPA 137


>gi|291545446|emb|CBL18554.1| transcription antitermination factor NusB [Ruminococcus sp. SR1/5]
          Length = 158

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 1   MKSGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M+     R     L+          +T  L L +       LS++DQ  ++         
Sbjct: 1   MRRREQ-REHVFKLMFMTEFNSEEEMTEQLSLYFE--GLGELSEQDQEYMKKKYAHVKEH 57

Query: 60  LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
           L  IDA L+         R        LR++V ++ Y  DV     ++ AVE AKR   +
Sbjct: 58  LEEIDAQLNSASRGWKTKRMSRVDLAALRLAVYEMEYDADVPTGVAINEAVELAKRFGGD 117

Query: 118 RHFA 121
              +
Sbjct: 118 ASGS 121


>gi|315652076|ref|ZP_07905077.1| transcription antitermination factor NusB [Eubacterium saburreum
           DSM 3986]
 gi|315485723|gb|EFU76104.1| transcription antitermination factor NusB [Eubacterium saburreum
           DSM 3986]
          Length = 150

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 13/132 (9%)

Query: 3   SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQ----------RDQILVRA 51
           +    R     +L  +            D  +   +                 D   +R+
Sbjct: 6   TRHLLREHCFKILFSLDFYPEEEAEIQTDNYFESPSLEDEDDVLIHDANYGDGDIEYIRS 65

Query: 52  IVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109
              +       ID ++  +     L R     + +LR+++A++ Y  D+     ++ AVE
Sbjct: 66  KAMLVRDNQAEIDKMITELSQGWKLERIGRVEKSILRLAIAEMKYDSDIPVSVAINEAVE 125

Query: 110 QAKRDKENRHFA 121
            AK    +  ++
Sbjct: 126 LAKAYGRDESYS 137


>gi|56708465|ref|YP_170361.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670936|ref|YP_667493.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457622|ref|ZP_03666095.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371089|ref|ZP_04987091.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875309|ref|ZP_05248019.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|54113219|gb|AAV29243.1| NT02FT2024 [synthetic construct]
 gi|56604957|emb|CAG46051.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321269|emb|CAL09434.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569329|gb|EDN34983.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841308|gb|EET19744.1| N utilization substance protein B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159666|gb|ADA79057.1| N utilisation substance protein B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 141

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++  L+     ++   VE      
Sbjct: 59  KTNQDTIDKYIKENSSNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRRVSREKIE 137
               +   +N++L+ +++    
Sbjct: 119 TEEGYK-FINAVLQNLAKSIRC 139


>gi|225025922|ref|ZP_03715114.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
 gi|224956708|gb|EEG37917.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
          Length = 133

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 1   MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK S    R     LL  V    +  L   +   + +     +  +DQI +   +   L+
Sbjct: 1   MKMSRRKVRETIFLLLFRVEFNTQEELQEQIKWYFEERP--DIEGKDQIYIETKIGSILK 58

Query: 59  FLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
            LP ID  +  +     L R       +LR++V +I    ++     ++ AVE AK    
Sbjct: 59  RLPEIDEQIHSICEGWRLERLGKPELAILRLAVYEITNDANIPTGVAINEAVELAKIYCS 118

Query: 117 NRHFAKLVNSILRR 130
                + VN +L +
Sbjct: 119 EE-APRFVNGVLAK 131


>gi|320587893|gb|EFX00368.1| nol1 nop2 sun domain containing protein [Grosmannia clavigera
           kw1407]
          Length = 595

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 29/122 (23%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--------ELVP 392
           A FQ  LLL    F      + +S CS+  Q++E+VV + L S+            E V 
Sbjct: 459 AAFQLTLLLHAFRFPAAR-RITYSTCSVHAQENEQVVVRALTSASARFGWRLLRRDEQVA 517

Query: 393 LNSAYWKSIDMAMALSPEG--------------WIRITPDMLEKIDGVSSGMDGFFAVAL 438
              A+    D A A + +G               IR  PD +E+      G+ GFF  A 
Sbjct: 518 GMRAWPVRGDPAAAQNVDGVDDSTINSVAVADACIRSYPDDIER------GIMGFFVAAF 571

Query: 439 RR 440
            R
Sbjct: 572 VR 573


>gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040022|gb|ACT56818.1| transcription antitermination protein NusB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 170

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 12/135 (8%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLE--YGDSAFRLLSQR------DQILVRAIVNVTLR 58
           ARL +   L  +     S T ++     Y   A   L         D    R I++  + 
Sbjct: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
               ID ++   L    S  R    L  +LR  V +++    V    ++   V  A    
Sbjct: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138

Query: 116 ENRHFAKLVNSILRR 130
                 K +N++L +
Sbjct: 139 YGDE-PKFINAVLDK 152


>gi|15604037|ref|NP_220552.1| transcription antitermination protein NusB [Rickettsia prowazekii
           str. Madrid E]
 gi|3860728|emb|CAA14629.1| N UTILIZATION SUBSTANCE PROTEIN B (nusB) [Rickettsia prowazekii]
          Length = 174

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQIL--------VRAIVNVTL 57
           AR+ +   L   +++    +  ++                +           + +V    
Sbjct: 31  ARIAAVQALYQNILQNNYDMYDIMQNILACYHSNNSIDLPKNFKISLSISHFKMLVKSVF 90

Query: 58  RFLPRIDAVLDFVLISSLPR--KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
             + ++D ++D  L ++         L+ LLRVS+ ++L+        V++   + A  D
Sbjct: 91  ENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAKVVINEYTDIA-ND 149

Query: 115 KENRHFAKLVNSILRRVSREKI 136
             N H    VNSIL ++++E  
Sbjct: 150 LLNEHEIGFVNSILDKIAQENN 171


>gi|20141624|sp|Q9ZE01|NUSB_RICPR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|292571756|gb|ADE29671.1| N utilization substance protein B [Rickettsia prowazekii Rp22]
          Length = 155

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQIL--------VRAIVNVTL 57
           AR+ +   L   +++    +  ++                +           + +V    
Sbjct: 12  ARIAAVQALYQNILQNNYDMYDIMQNILACYHSNNSIDLPKNFKISLSISHFKMLVKSVF 71

Query: 58  RFLPRIDAVLDFVLISSLPR--KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
             + ++D ++D  L ++         L+ LLRVS+ ++L+        V++   + A  D
Sbjct: 72  ENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAKVVINEYTDIA-ND 130

Query: 115 KENRHFAKLVNSILRRVSREKI 136
             N H    VNSIL ++++E  
Sbjct: 131 LLNEHEIGFVNSILDKIAQENN 152


>gi|153953852|ref|YP_001394617.1| transcription antitermination protein NusB [Clostridium kluyveri
           DSM 555]
 gi|219854467|ref|YP_002471589.1| hypothetical protein CKR_1124 [Clostridium kluyveri NBRC 12016]
 gi|189035884|sp|A5N7I8|NUSB_CLOK5 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|254772627|sp|B9E100|NUSB_CLOK1 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|146346733|gb|EDK33269.1| NusB [Clostridium kluyveri DSM 555]
 gi|219568191|dbj|BAH06175.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 156

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 52/148 (35%), Gaps = 20/148 (13%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------------D 45
           +    R ++  LL  +   +     ++     +      SQ+                 D
Sbjct: 2   NRKKTRELTMKLLFQMAINKEKADVIISNLKENIEMEQGSQKNSISQIYGENMGDLKNID 61

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAV 103
              V  ++    +    ++  ++  L +  L R       +L++   + L+  D+ +   
Sbjct: 62  IDYVVRVLRGIEKNEDMLNIEIEKYLRNWKLNRLSKVDSAILKICTYEFLHEDDIPEKVS 121

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRV 131
           ++ A+E AK+    +  +  +N +L  +
Sbjct: 122 INEAIELAKKYSSEKSAS-FINGVLGNM 148


>gi|157870714|ref|XP_001683907.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126974|emb|CAJ05308.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 708

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 23/141 (16%)

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D         FDAVL+D PC+  G   R   +   +    I +SA +QRKL    I  ++
Sbjct: 512 DGSAASHTASFDAVLLDPPCTGMGL--RPKLMPHVQSIASIQRSADYQRKLFDSCIRHIR 569

Query: 357 -----PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411
                P G++V+S C+   +++E  V   L + P         +A      ++       
Sbjct: 570 GSPTSP-GVIVYSTCTTTLEENEANVLHFLCTYPSVRLARARTAAQRALCGLS------- 621

Query: 412 WIRITPDMLEKIDGVSSGMDG 432
                     +  G     DG
Sbjct: 622 --------TVRSYGAQHDTDG 634


>gi|289643066|ref|ZP_06475197.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata]
 gi|289507110|gb|EFD28078.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata]
          Length = 99

 Score = 59.9 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 52  IVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109
           +V   +  L  ID +L       +L R     + +LR+   ++L+  D+ D   +D AV 
Sbjct: 8   LVEGVVERLADIDEMLSDHAEEWTLERMPPVDRNILRIGALELLWREDIPDGVAIDEAVA 67

Query: 110 QA 111
            A
Sbjct: 68  LA 69


>gi|210615789|ref|ZP_03290770.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
 gi|210150125|gb|EEA81134.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
          Length = 132

 Score = 59.9 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL----SQRDQILVRAIVNVTLR 58
           +    R     +L  +           +++  +  +  L     ++D+  +       + 
Sbjct: 2   NRSELREHIFRMLFRIE-----FNSEEEMKEQEDLYFELLGETDEQDKTYILNKYKAVVD 56

Query: 59  FLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
               ID +L+         R       +LR++V ++ +  +V     ++ AVE AK+   
Sbjct: 57  KKEEIDGLLNEYTTGWKTSRMNRVDLTILRLAVYEMKWDEEVPTGVAINEAVELAKKYSS 116

Query: 117 NRHFA 121
           +   +
Sbjct: 117 DEGPS 121


>gi|46124797|ref|XP_386952.1| hypothetical protein FG06776.1 [Gibberella zeae PH-1]
          Length = 578

 Score = 59.9 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 11/136 (8%)

Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACF----QRKLLLQGISFVKPGGIVVFSNCSLDK 370
           P      I    + +  +   D+          Q  LLL    F      + +S CS+  
Sbjct: 364 PAPENVMIDDDGNEMAIKSEKDLETRLEALSSFQLVLLLHAFRF-PSAKKITYSTCSVHV 422

Query: 371 QDSEEVVQKVL------RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
           Q++E VV + L      R     ++     S   +     +  + EG   I    +    
Sbjct: 423 QENERVVMRALESDIAKRRGWRILQRKDQVSGMREWPVRGLPEACEGDKEIAEGCIRSYK 482

Query: 425 GVSSGMDGFFAVALRR 440
               G+ GFF     R
Sbjct: 483 DDGQGVMGFFVAGFVR 498


>gi|312076942|ref|XP_003141085.1| hypothetical protein LOAG_05500 [Loa loa]
 gi|307763752|gb|EFO22986.1| hypothetical protein LOAG_05500 [Loa loa]
          Length = 449

 Score = 59.9 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 12/167 (7%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCN 282
           WW+ D  +  PV   G     ++LD+CAAPGGK+  ++ +    T  D  + RL  L   
Sbjct: 269 WWLLDGGSIAPVLALGLTEESNILDMCAAPGGKSLLIVQTAKL-TCNDNKQSRLGNLHRA 327

Query: 283 LDRLHLYAEDI---------IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333
           L +      ++                +     +D +LVD PC+S        D      
Sbjct: 328 LGQYIPVNSEVADRIILKRKDASVLDGWDECSSYDRILVDVPCTSDRLSVNRDDGNLYST 387

Query: 334 TDDIVKS--ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378
                +      Q ++L+  +  V  GG VV+S C+L    ++ V++
Sbjct: 388 QLTEQRLNLPQVQTRMLVNALRSVHVGGSVVYSTCALSPVQNDGVIE 434


>gi|227499439|ref|ZP_03929550.1| possible transcription antitermination protein NusB [Anaerococcus
           tetradius ATCC 35098]
 gi|227218501|gb|EEI83744.1| possible transcription antitermination protein NusB [Anaerococcus
           tetradius ATCC 35098]
          Length = 133

 Score = 59.9 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R     L+            +  +E  D     L+  D+  ++A ++  L  L  I+  +
Sbjct: 7   REWVFKLIYQ--------DMISKIEDVDKILAELNLADEDFIKASISSYLDKLTLIEEKV 58

Query: 68  DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           D  L S   R    L+ +L +S+ +I ++D+     ++ AV  AK+  +   + 
Sbjct: 59  DSNLDSKHKRIAKVLRSILYLSINEIYFMDIPVSVSINEAVNLAKKYSDEEDYK 112


>gi|294884401|ref|XP_002771134.1| williams-beuren syndrome critical region protein, putative
           [Perkinsus marinus ATCC 50983]
 gi|239874438|gb|EER02950.1| williams-beuren syndrome critical region protein, putative
           [Perkinsus marinus ATCC 50983]
          Length = 304

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQL----FGTLNNLSVLDLCAAPGGKTAQL-- 259
               ++++  P   +    +QD  + +              ++V+D CA+P  KT  +  
Sbjct: 6   PWNSKTLIESPLVKDFTLVLQDRGSCLSAHSLLAGVQPGEKITVVDACASPNSKTIHMLQ 65

Query: 260 ----IVSGAKVTALDVSKRRLEKLRCNLDRLHL----------------------YAEDI 293
                     + A+++  ++ + L   L +                          + ++
Sbjct: 66  LMRYRKIEGTMIAMELDPKQAKVLLDRLAKAGFLPRDGTRTSDEVVHLSAEHSPDISVEV 125

Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
              D   Y   ++   V +D  CS +G +  H D   +     + K + FQ ++L   ++
Sbjct: 126 RVGDFIKYSSAEVTH-VNLDPSCSGSGLVDVHADSE-SVGAQRLRKLSSFQCRMLDHALT 183

Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
                  V +S CS+  +++ EVV+K L                    ++         +
Sbjct: 184 AFHAVRTVCYSTCSIRNEENGEVVKKALNRLQSGYRREWPFEVGSCWKELTHGARD---V 240

Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
           ++ P++            GF+   L +
Sbjct: 241 QVRPEVDHCR--------GFYLCKLVK 259


>gi|297621030|ref|YP_003709167.1| nusB putative transcription antitermination factor, NusB family
           [Waddlia chondrophila WSU 86-1044]
 gi|297376331|gb|ADI38161.1| nusB putative transcription antitermination factor, NusB family
           [Waddlia chondrophila WSU 86-1044]
          Length = 145

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 1   MK-SGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           M       R +   LL        ++ +    L  E   S   +L  ++++    ++   
Sbjct: 4   MAVPQQKIREIVFQLLYGHDWHSPEKEAFHTFLSKEAKISKKVILEAQERV---DLIRG- 59

Query: 57  LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
                 +D ++     S +  R     + +LR+ + ++L+ + +     +  A+   ++ 
Sbjct: 60  --REKELDQLIGESAKSYAFDRIPRVERNILRLGIYELLFDEQIPPKVAIAEAIRLGRKF 117

Query: 115 KENRHFAKLVNSILRRVSREKIELL 139
                 A  +N+I+  + +++    
Sbjct: 118 STPES-ATFINAIMDELYQKRCTPQ 141


>gi|257468965|ref|ZP_05633059.1| transcription antitermination protein NusB [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063213|ref|ZP_07927698.1| N utilization substance protein B [Fusobacterium ulcerans ATCC
           49185]
 gi|313688889|gb|EFS25724.1| N utilization substance protein B [Fusobacterium ulcerans ATCC
           49185]
          Length = 132

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   + AR     L+     K  +   +L+           ++ +   ++  +N      
Sbjct: 1   MSRRL-AREELFKLVFEGEIKEENTKDILESYLKREEVLQ-NENEITFIKKYMNGIAENN 58

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
            RI   ++  +   S  R     + LL++SV +IL  D     V++ AVE AK    +  
Sbjct: 59  DRILKTIEEKITGWSFERIGNVEKALLKISVYEILCEDTPHEIVINEAVELAK-MYGDEK 117

Query: 120 FAKLVNSILRR 130
            ++ +N +L +
Sbjct: 118 TSEFINGVLAK 128


>gi|169333804|ref|ZP_02860997.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259369|gb|EDS73335.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM
           17244]
          Length = 132

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 7/122 (5%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK  + AR +   ++  +           +          +        +  V   L  L
Sbjct: 1   MKRDV-ARDLVYKIIFQINFHDDFA----ERYEQMILDSGIKGTQGEYAKKTVKGILDNL 55

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
             ID  +   L      R    +  +LR+ V +I+Y  D+     ++ AV  A    + +
Sbjct: 56  EEIDDTIKDNLKGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVGLNEAVSLAHTYSDEK 115

Query: 119 HF 120
             
Sbjct: 116 EA 117


>gi|2766598|gb|AAB95441.1| NUSB [Shigella flexneri]
          Length = 101

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +   L      +     + D+EY   A + +   D +  R ++         +D ++ 
Sbjct: 11  ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATKTAYLDGLMK 67

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVAD 100
             L   L       + +LR+++ ++    DV  
Sbjct: 68  PYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100


>gi|260588123|ref|ZP_05854036.1| transcription antitermination factor NusB [Blautia hansenii DSM
           20583]
 gi|260541650|gb|EEX22219.1| transcription antitermination factor NusB [Blautia hansenii DSM
           20583]
          Length = 135

 Score = 59.5 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R     LL  +     +      ++        L   +Q  +     +    L  IDA+L
Sbjct: 7   REHIFKLLF-LGEFNETAEMPEQIQLYFEGLSDLQPTEQAYMENKYALVKEHLEEIDALL 65

Query: 68  DFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +         R       +LR++V ++ Y  DV     ++ AVE +K    +   +
Sbjct: 66  NEKSAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISKSFGGDDSAS 121


>gi|67624085|ref|XP_668325.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54659506|gb|EAL38079.1| hypothetical protein Chro.50209 [Cryptosporidium hominis]
          Length = 371

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 83/242 (34%), Gaps = 36/242 (14%)

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA----------EGVWWVQ 226
              + V    ++    L  +        +      +     F           E   +  
Sbjct: 37  PHHIAVVNQFDSSKAHLIEINGKIYKRWVFPFTYYLTYENEFNLLENEPLIVPEKCIYFM 96

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEK 278
           DA++ I   L       +VLDLC+APGGK           +   G K     ++    +K
Sbjct: 97  DAASIIVSYLLDIDRFSTVLDLCSAPGGKALIIIKRILEDINKHGEKDKMCHITCNEYDK 156

Query: 279 ------------LRCNLDRLHLYAEDIIEMDA-----FDYCPKKLFDAVLVDAPCSSTGT 321
                          N D   + A  I          +    +  F  +LVDAPCSS   
Sbjct: 157 GRFSRLNKVLQSHIGNFDLNRVNAVTISNDATSSSLLYSLRKQSRFLKILVDAPCSSDRH 216

Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
           +    D           +++  Q +++   I  ++  GI+++  C+L++ +++  V+++ 
Sbjct: 217 LILSNDFKH-WSIKLAKRNSERQTEIINNAIGLLQDDGIILYCTCTLNEIENDYTVERIC 275

Query: 382 RS 383
            +
Sbjct: 276 NN 277


>gi|183221521|ref|YP_001839517.1| transcription antitermination protein NusB [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911605|ref|YP_001963160.1| transcription antitermination protein NusB [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|238687781|sp|B0SB76|NUSB_LEPBA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687828|sp|B0ST01|NUSB_LEPBP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|167776281|gb|ABZ94582.1| Transcription antitermination protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779943|gb|ABZ98241.1| N utilization substance protein B-like protein (Protein NusB); L
           factor [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 140

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M S    R ++   L  +          +  ++ D     +++ ++     +V   +   
Sbjct: 1   MSSRHRGRSLALMCLYQIDLVGTDPDRAMKFDWYDKK---ITREEKDYAVFLVKGVVENR 57

Query: 61  PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKE 116
             ID ++     +  L R     + +LR+S+  +    +L      V++ AVE  K  + 
Sbjct: 58  KAIDTLIKKYSENWELSRISVVNRCILRLSILSLQKEPFLAAP--VVINEAVELTKEFE- 114

Query: 117 NRHFAKLVNSILRRVSREKIELLQRI 142
               A+ +N +L    +++I   +  
Sbjct: 115 TEESAQFINGLLDAFYKKEILPKEPH 140


>gi|237743358|ref|ZP_04573839.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1]
 gi|229433137|gb|EEO43349.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1]
          Length = 157

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
           AR     L+        S   L     +   +       LS++    ++  +N  +    
Sbjct: 19  AREEVFKLVFGAELTGSSSDELKQDFSIYLQNDEEFINALSEKQLEFIKNSINGIVENYD 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  V+     +    R     + LL V   + L  +     + +  VE AK    N   
Sbjct: 79  NIKDVIKKNTQNWTYERIGVIERSLLIVGTYEFLIKNTPIEVIANEIVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + +N IL  
Sbjct: 138 YEFINGILAN 147


>gi|238854805|ref|ZP_04645135.1| transcription antitermination factor NusB [Lactobacillus jensenii
           269-3]
 gi|260664036|ref|ZP_05864889.1| transcription antitermination factor NusB [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933883|ref|ZP_06339231.1| transcription antitermination factor NusB [Lactobacillus jensenii
           208-1]
 gi|313472312|ref|ZP_07812804.1| transcription antitermination factor NusB [Lactobacillus jensenii
           1153]
 gi|238832595|gb|EEQ24902.1| transcription antitermination factor NusB [Lactobacillus jensenii
           269-3]
 gi|239529835|gb|EEQ68836.1| transcription antitermination factor NusB [Lactobacillus jensenii
           1153]
 gi|260561922|gb|EEX27891.1| transcription antitermination factor NusB [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301972|gb|EFA94226.1| transcription antitermination factor NusB [Lactobacillus jensenii
           208-1]
          Length = 133

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           S  ++R ++   +   +         ++      A  L  +        I+   L   P 
Sbjct: 2   SQHDSRRIAMQAIF--LANGEP-DLTIEQVETKVAKSLDLKEIPAYAHEIIAGVLAKRPE 58

Query: 63  IDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
           I+A +   L     L R       ++ V++ +I   D ++  A V+ A+   +   + + 
Sbjct: 59  IEADISKYLKKGWRLERVNRISVAIMEVAIFEISQSDAISAPAAVNEALILCEEFDDPKS 118

Query: 120 FAKLVNSILRRVSR 133
               +N IL     
Sbjct: 119 -KSFINGILANFMP 131


>gi|306836202|ref|ZP_07469186.1| N utilization substance protein B [Corynebacterium accolens ATCC
           49726]
 gi|304567923|gb|EFM43504.1| N utilization substance protein B [Corynebacterium accolens ATCC
           49726]
          Length = 212

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLPRIDAVLDFVL 71
            +L     + +    +++     +     +        + IV      L  ID  +   L
Sbjct: 27  DILYEAENRDVDPVAIVEDRVALAREDRHAVAPIADYTKVIVQGVAEELDAIDDTISRYL 86

Query: 72  I--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
                L R     + +LR+SV ++L+  DV     V   VE A +   ++   
Sbjct: 87  SQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAP 139


>gi|89256034|ref|YP_513396.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314512|ref|YP_763235.1| N utilization substance protein B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502045|ref|YP_001428109.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010215|ref|ZP_02275146.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367376|ref|ZP_04983402.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica 257]
 gi|290953937|ref|ZP_06558558.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312686|ref|ZP_06803431.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143865|emb|CAJ79083.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129411|gb|ABI82598.1| N utilization substance protein B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253192|gb|EBA52286.1| N utilisation substance protein B [Francisella tularensis subsp.
           holarctica 257]
 gi|156252648|gb|ABU61154.1| transcription antitermination factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 141

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++  L+     ++   VE      
Sbjct: 59  KTNQDTIDKYIKENSSNGVESINYVDYVVLQVAIAELIECLENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   +N++L+ 
Sbjct: 119 TEEGYK-FINAVLQN 132


>gi|226226069|ref|YP_002760175.1| hypothetical protein GAU_0663 [Gemmatimonas aurantiaca T-27]
 gi|226089260|dbj|BAH37705.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 390

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 18/131 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---- 299
             LD  A  G     L      VTA+D+S   L ++  +  R  L   + +E DAF    
Sbjct: 219 RALDCFAYHGSFALHLADRAEHVTAVDISAPALARVHEHAQRNGLTNIEPVEGDAFDVLR 278

Query: 300 -DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
             Y   + FD ++VD P              + ++ + I  +    + + LQ +  + PG
Sbjct: 279 AWYREGRRFDTIVVDPPA-------------FAKNRNAIEGALRGYKDINLQAMRLLAPG 325

Query: 359 GIVVFSNCSLD 369
           G++  ++CS  
Sbjct: 326 GLLFTASCSFH 336


>gi|255038668|ref|YP_003089289.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053]
 gi|254951424|gb|ACT96124.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053]
          Length = 388

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R ++   L        +        +  +      + D+  V  +  + +R   + D  L
Sbjct: 252 RSLAIKTL-------RTADDA--HTFQLAPLTKDWEEDRAFVEELCKIVIRESDQYDVYL 302

Query: 68  DFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
           +  L +  L R       +L+ ++A+++ +  +     ++  +E AKR    + 
Sbjct: 303 EDQLKNWELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKS 356


>gi|295090868|emb|CBK76975.1| transcription antitermination factor NusB [Clostridium cf.
           saccharolyticum K10]
          Length = 147

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 19/137 (13%)

Query: 3   SGMNARLVSSHLLSCVMR--KRISLTCLLDLEYGDSAFR--------------LLSQRDQ 46
           +    R     LL C     +  +    ++  + +                   L   D 
Sbjct: 2   TRRELREHCFKLLFCADFYPEGET-KEQIEQYFTEPREDDYTSDGVYELIHCPELDVYDS 60

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVV 104
             V+  V   L  L  +D  ++      +  R       +LR+++ +I Y  +V D   +
Sbjct: 61  GYVKNKVEKVLEKLTELDTAINETAKGWTTRRMGKVELTILRLALFEIRYDEEVPDKVAI 120

Query: 105 DLAVEQAKRDKENRHFA 121
           + AVE AK+   +   A
Sbjct: 121 NEAVELAKKFGGDESPA 137


>gi|227503547|ref|ZP_03933596.1| transcription antitermination protein NusB [Corynebacterium
           accolens ATCC 49725]
 gi|227075583|gb|EEI13546.1| transcription antitermination protein NusB [Corynebacterium
           accolens ATCC 49725]
          Length = 211

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLPRIDAVLDFVL 71
            +L     + +    +++     +     +        + IV      L  ID  +   L
Sbjct: 27  DILYEAENRDVDPVAIVEDRVALAREDRHAVAPIADYTKVIVQGVAEELDAIDDTISRYL 86

Query: 72  I--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
                L R     + +LR+SV ++L+  DV     V   VE A +   ++   
Sbjct: 87  SQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAP 139


>gi|114593756|ref|XP_526561.2| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 703

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 69/465 (14%), Positives = 140/465 (30%), Gaps = 64/465 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAV-LDFV 70
           +   +R   S   +L     +    L    DQ   R    +    L++   ++ + +D  
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA----KLVNS 126
           +  S        Q   RV     L  +    + V          K     A    ++ + 
Sbjct: 113 IFPSTTIVNRKFQT--RV-----LSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHD 165

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
            L         + ++    S +P +          +E    +     + +   L +   +
Sbjct: 166 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV 225

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                    V++         L   ++++  F +     QD S S+ V     L N+   
Sbjct: 226 FAVDQHCYDVLIFPSH-----LKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDD 280

Query: 247 DLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
            L    G       +              G +  A D   + L        ++     +I
Sbjct: 281 ILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKIGCKNIEI 334

Query: 294 IEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT-------D 335
           +     +   K    +    +L+   CS  G           H D  + +D        D
Sbjct: 335 LHETFINIDSKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVD 394

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       + +    
Sbjct: 395 KLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----FQDLGNKG 448

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++     + L     I+++ D   +++      +G F   L R
Sbjct: 449 QPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 492


>gi|104774290|ref|YP_619270.1| transcription antitermination protein NusB [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423371|emb|CAI98227.1| Transcription antitermination protein NusB [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|325126077|gb|ADY85407.1| Transcriptional termination factor [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 132

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 9/133 (6%)

Query: 5   MNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            ++R ++   +    +      + L +          L        + +V+  +     +
Sbjct: 4   HDSRRIALQAIYLYNQDPSFTASELENNVKSALDLDTLP----AYSQELVSGVIDKQAEL 59

Query: 64  DAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120
              L   L     L R   +   +L V++ ++LY  V  D + ++ A+       + +  
Sbjct: 60  RDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDEFDDPKSK 119

Query: 121 AKLVNSILRRVSR 133
           A  +N IL    +
Sbjct: 120 A-FINGILANFVQ 131


>gi|187931389|ref|YP_001891373.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712298|gb|ACD30595.1| transcription antitermination factor NusB [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 141

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++  L+     ++   V       
Sbjct: 59  KTNQDTIDKYIKENSSNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVGICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   +N++L+ 
Sbjct: 119 TEEGYK-FINAVLQN 132


>gi|320037469|gb|EFW19406.1| hypothetical protein CPSG_03790 [Coccidioides posadasii str.
           Silveira]
          Length = 540

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K +  Q +++     F      + +S CS+  Q++E VV + L+SS        +     
Sbjct: 395 KLSNLQAQIIEHAFKFPCAT-RITYSTCSIHAQENENVVYRALQSSVARERQWKILPRSE 453

Query: 399 KSIDMAMALSPEGWIR----------IT-------PDMLEKIDGVSSGMDGFFAVALRR 440
           ++  +       GW++                      L        G  GFF     R
Sbjct: 454 QAEGLKNWPHR-GWLKREHKPVDGEETWELTDMESEACLRCSARDVEGTGGFFVAGFVR 511


>gi|319442128|ref|ZP_07991284.1| transcription antitermination protein NusB [Corynebacterium
           variabile DSM 44702]
          Length = 190

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEY--GDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             +L     + I  +  + D      D A ++    D      IV      L  ID  + 
Sbjct: 21  VDMLFEAEFRDIDPVEIVEDRRELSRDEANQVAPVND--YTAQIVGGVAENLDGIDGAIA 78

Query: 69  FVL--ISSLPRKKYSLQQLLRVSVAQIL--YLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
             L    +L R     + +LRVS  ++L  + ++ +   VD  +  AK    +      V
Sbjct: 79  GHLSSEWTLDRLPAVDRAVLRVSAWELLHNHDEIPEKVAVDEGIGLAKEY-GHDKAPGYV 137

Query: 125 NSILR 129
           +++L 
Sbjct: 138 HAVLD 142


>gi|119174502|ref|XP_001239612.1| hypothetical protein CIMG_09233 [Coccidioides immitis RS]
          Length = 544

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K +  Q +++     F      + +S CS+  Q++E VV + L+SS        +     
Sbjct: 396 KLSNLQAQIIEHAFKFPCAT-RITYSTCSIHAQENENVVYRALQSSVARERQWKILPRSE 454

Query: 399 KSIDMAMALSPEGWIR----------IT-------PDMLEKIDGVSSGMDGFFAVALRR 440
           ++  +       GW++                      L        G  GFF     R
Sbjct: 455 QAEGLKNWPHR-GWLKREHKPVDGEETWELTDMESEACLRCSARDVEGTGGFFVAGFVR 512


>gi|167747003|ref|ZP_02419130.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662]
 gi|317471818|ref|ZP_07931155.1| transcription antitermination factor NusB [Anaerostipes sp.
           3_2_56FAA]
 gi|167653963|gb|EDR98092.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662]
 gi|316900709|gb|EFV22686.1| transcription antitermination factor NusB [Anaerostipes sp.
           3_2_56FAA]
          Length = 131

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 3   SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    R     L   +            DL + ++ F    ++D   ++      L  L 
Sbjct: 2   TRSKLREQMFRLCFSIDFHTSEEFEAQADLYFSNNDFFRNKEKD--YIKTRTLDMLSRLE 59

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
            ID  ++       + R   +   +LR++V +I++  D+ D   ++ AVE +K    N  
Sbjct: 60  EIDQKINENSKGWDIKRLGKAELTILRIAVYEIMFDEDIPDKVAINEAVELSKTYC-NEK 118

Query: 120 FAKLVNSILRR 130
            A  +N IL +
Sbjct: 119 AASFINGILGK 129


>gi|254994892|ref|ZP_05277082.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Mississippi]
 gi|255003026|ref|ZP_05277990.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004149|ref|ZP_05278950.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Virginia]
          Length = 173

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 7   ARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           AR ++      +M        L  LL+          L + D+ L+  I+   L     I
Sbjct: 19  ARFLAVQGAYSMMFSSYAAEDLDGLLEHLCEMRGVFGLGRVDKKLLTKILRSMLARCSEI 78

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           DA +   +    S+ R       ++R  + ++L     +  V++  V+ A          
Sbjct: 79  DATISEHINKNWSMDRINLVSLSIMRAGICELLCFSTNESIVINEYVDIA-SYALEDAEV 137

Query: 122 KLVNSILRR 130
             VN+IL +
Sbjct: 138 NFVNAILNK 146


>gi|56416682|ref|YP_153756.1| N utilization substance protein B [Anaplasma marginale str. St.
           Maries]
 gi|222475047|ref|YP_002563462.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Florida]
 gi|56387914|gb|AAV86501.1| N utilization substance protein B [Anaplasma marginale str. St.
           Maries]
 gi|222419183|gb|ACM49206.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
           Florida]
          Length = 177

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 7   ARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           AR ++      +M        L  LL+          L + D+ L+  I+   L     I
Sbjct: 23  ARFLAVQGAYSMMFSSYAAEDLDGLLEHLCEMRGVFGLGRVDKKLLTKILRSMLARCSEI 82

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           DA +   +    S+ R       ++R  + ++L     +  V++  V+ A          
Sbjct: 83  DATISEHINKNWSMDRINLVSLSIMRAGICELLCFSTNESIVINEYVDIA-SYALEDAEV 141

Query: 122 KLVNSILRR 130
             VN+IL +
Sbjct: 142 NFVNAILNK 150


>gi|227833206|ref|YP_002834913.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184192|ref|ZP_06043613.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
 gi|259514808|sp|C3PGM1|NUSB_CORA7 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|227454222|gb|ACP32975.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
           700975]
          Length = 176

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 13  HLLSCVMRKRISLTCLLDL--EYGDSAFRLLSQ-RDQILVRAIVNVTLRFLPRIDAVLDF 69
            +L     + +    +++   E        ++   D    R IV+     L  ID  +  
Sbjct: 23  DILFEAESRDVDPVAIVEDRVELARDPENGVAPIAD--YTREIVSGAAEELDAIDDAIAR 80

Query: 70  VL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
            L    SL R     + ++RVSV +IL+  DV +   +   VE A  +  N   A  +++
Sbjct: 81  YLSSEWSLERIPAVDRAIMRVSVWEILFNADVPNATALVEGVELA-SEYSNDKAAPYIHA 139

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKE 154
           +L  V + +          +  P    E
Sbjct: 140 VLDDVIQAQSADSPMAPASAEEPAEPAE 167


>gi|303314363|ref|XP_003067190.1| NOL1/NOP2/sun family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106858|gb|EER25045.1| NOL1/NOP2/sun family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 540

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           K +  Q +++     F      + +S CS+  Q++E VV + L+SS        +     
Sbjct: 395 KLSNLQAQIIEHAFKFPCAT-RITYSTCSIHAQENENVVYRALQSSVARERQWKILPRSE 453

Query: 399 KSIDMAMALSPEGWIR----------IT-------PDMLEKIDGVSSGMDGFFAVALRR 440
           ++  +       GW++                      L        G  GFF     R
Sbjct: 454 QAEGLKNWPHR-GWLKREHKPVDGEETWELTDMESEACLRCSVRDVEGTGGFFVAGFVR 511


>gi|300811637|ref|ZP_07092113.1| transcription antitermination factor NusB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497338|gb|EFK32384.1| transcription antitermination factor NusB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|325685900|gb|EGD27966.1| transcription antitermination protein NusB [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 132

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 5   MNARLVSSHLLSCVMRKRIS---LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
            ++R ++   +   +  +      + L +          L        + +V+  +    
Sbjct: 4   HDSRRIALQAIY--LYNQDPSVTASELENNVKSALDLDTLP----AYSQELVSGVIDKQA 57

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENR 118
            +   L   L     L R   +   +L V++ ++LY  V  D + ++ A+       + +
Sbjct: 58  ELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDEFDDPK 117

Query: 119 HFAKLVNSILRRVSR 133
             A  +N IL    +
Sbjct: 118 SKA-FINGILANFVQ 131


>gi|251770860|gb|EES51447.1| transcription antitermination factor (NusB) [Leptospirillum
           ferrodiazotrophum]
          Length = 180

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 7/145 (4%)

Query: 6   NARLVSSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
            AR      L     +       LL    G      ++         +    L   P ID
Sbjct: 18  AARGKVLQRLFAEEYESRPSPDPLLKDLIGWEGEDPMAN---AYADRLYAEILFRKPEID 74

Query: 65  AVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122
           AV++ +    SLPR     + +LR+ + +IL+   +     V  A++ A R   +     
Sbjct: 75  AVIEELARGWSLPRLTRVDRNILRIGLCEILFDPAMPFRVSVHEALDLAHRF-SDPEAVS 133

Query: 123 LVNSILRRVSREKIELLQRIAGISI 147
            +N IL                   
Sbjct: 134 FLNGILHEAGVRHAPEKGPYDPAPP 158


>gi|208779634|ref|ZP_03246979.1| transcription antitermination factor NusB [Francisella novicida
           FTG]
 gi|208744595|gb|EDZ90894.1| transcription antitermination factor NusB [Francisella novicida
           FTG]
          Length = 141

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+V++A+++   +     ++   VE      
Sbjct: 59  KTNQDTIDKYIKENSNNGVESINYVDYAVLQVAIAELIECFENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   +N++L+ 
Sbjct: 119 TEEGYK-FINAVLQN 132


>gi|154483655|ref|ZP_02026103.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC
           27560]
 gi|149735565|gb|EDM51451.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC
           27560]
          Length = 131

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           + +  R  +  LL C      S +    DL + ++    +S+ D+  +   V+     + 
Sbjct: 2   NRVKLRENTFKLLYCNDFHNRSEMPKQYDLFWEETP--EVSEEDRKFISNRVDAIAEKID 59

Query: 62  RIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119
            ID  ++   +  +  R       +LR++  ++ +  D+ +   VD A+E AK+      
Sbjct: 60  EIDEAINKAAVKWTTDRMSKVDLTILRLAYYEMKIDEDIPEKVAVDQAIELAKKY-GTDD 118

Query: 120 FAKLVNSILRR 130
               VN +L +
Sbjct: 119 SPSFVNGVLAK 129


>gi|258545998|ref|ZP_05706232.1| N utilization substance protein B family protein (protein NusB)
           [Cardiobacterium hominis ATCC 15826]
 gi|258518766|gb|EEV87625.1| N utilization substance protein B family protein (protein NusB)
           [Cardiobacterium hominis ATCC 15826]
          Length = 144

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 4/124 (3%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR      L            +      D     +         A  +         D  
Sbjct: 15  ARRQLLQALYQWQMSGDDPWSVRRNRLVDPKTGDIDDD---YFNAAFDTISEKRDLYDTR 71

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           +               + +L + + +++   D+     ++ AVE AK+      +  +  
Sbjct: 72  VAEHTHRRPSTLDPVERAILWIGMYELIERFDIHPTVTINEAVELAKQFGAADSYKYINA 131

Query: 126 SILR 129
           ++  
Sbjct: 132 TLDH 135


>gi|302854610|ref|XP_002958811.1| hypothetical protein VOLCADRAFT_100142 [Volvox carteri f.
           nagariensis]
 gi|300255831|gb|EFJ40115.1| hypothetical protein VOLCADRAFT_100142 [Volvox carteri f.
           nagariensis]
          Length = 401

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 27/92 (29%)

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366
           FD +L+D PCS+ G   R                       LL   S +K    +V+  C
Sbjct: 188 FDYILLDPPCSALGLRPR-----------------------LLHAWS-LK---QLVYCTC 220

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           +++  ++E  V   L      +EL+P +    
Sbjct: 221 TINPDENEANVAWALDRFSGSLELLPADPLLG 252


>gi|266620364|ref|ZP_06113299.1| transcription antitermination factor NusB [Clostridium hathewayi
           DSM 13479]
 gi|288868036|gb|EFD00335.1| transcription antitermination factor NusB [Clostridium hathewayi
           DSM 13479]
          Length = 147

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 40  LLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-D 97
            +S  ++  ++      +R +P +D  +D V       R   +   +LR+++ +ILY  +
Sbjct: 54  EMSPEEESYLKTKTEAVMRKIPELDEKIDAVAEGWKTKRMGKAELTILRLALYEILYDEE 113

Query: 98  VADYAVVDLAVEQAKRDKENRHFA 121
           V +   ++ AVE AKR   N   A
Sbjct: 114 VPEKVAINEAVELAKRFGGNEAPA 137


>gi|154276576|ref|XP_001539133.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414206|gb|EDN09571.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 553

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 43/131 (32%)

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE-----------------------LVPLN 394
           GG VV+S CS++  ++E V+  V+     P +                       ++   
Sbjct: 36  GGRVVYSTCSMNPVENEAVIASVIDRCGGPSKVHIMDCSNELSAMKRSPGLTTWTVMDKE 95

Query: 395 SAYWKSIDMAMALSPEGWIRI-------TP---------DMLEKIDGVSSGMDGFFAVAL 438
              W +         EG + +        P             ++         FF   L
Sbjct: 96  GRIWANWKDVEEAVSEGDVTLNRIVEGMFPPAEEEGIDLSRCMRVYPHQQDTGAFFIAVL 155

Query: 439 RR----LIQPK 445
            +      +P+
Sbjct: 156 EKKSDIKARPE 166


>gi|261885488|ref|ZP_06009527.1| transcription antitermination protein NusB [Campylobacter fetus
          subsp. venerealis str. Azul-94]
          Length = 92

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 11/99 (11%)

Query: 1  MKSGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57
          M +    R     LL                L+     +         +     + N  L
Sbjct: 1  MATRHQVRQSVVSLLYANQMGSEMEEFSNEFLEETKIRNDQ-------KSFTLTLYNGVL 53

Query: 58 RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY 95
            L  ID  LD  L    L       + +LR+   +++Y
Sbjct: 54 DNLNLIDEALDAHLGKWKLVEIGAVERAILRLGAYKLIY 92


>gi|255957165|ref|XP_002569335.1| Pc21g23680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591046|emb|CAP97265.1| Pc21g23680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 574

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 21/121 (17%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---------------S 383
           K +  Q +++   + F      V +S CS+   ++E VV ++L                 
Sbjct: 410 KLSSIQARIVEHALRFSNAT-RVTYSTCSIHLIENEGVVARILNSQVAKERGWRLLRRDE 468

Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRI----TPDMLEKIDGVSSGMDGFFAVALR 439
            P  +          +         P G + +        +    G + G+ GFF     
Sbjct: 469 QPDGLRRWKKRGVREEGPAEGET-GPSGTVDLSDEALEACIRSWQGDAEGLGGFFVAGFI 527

Query: 440 R 440
           R
Sbjct: 528 R 528


>gi|297292484|ref|XP_001096340.2| PREDICTED: putative methyltransferase NSUN7 isoform 2 [Macaca
           mulatta]
          Length = 702

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/465 (14%), Positives = 140/465 (30%), Gaps = 64/465 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAV-LDFV 70
           +   +R   S   +L     +         DQ   R    +    L++   ++ + +D  
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSFSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA----KLVNS 126
           +  S   +    Q   RV     L  +    + V          K     A    ++ + 
Sbjct: 113 IFPSTTIQDRKFQT--RV-----LSDNEESISEVQEVENLLNSFKIKLAAALARCRIKHD 165

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
            L         + ++    S +P +          +E    +     + +   L +   +
Sbjct: 166 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV 225

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                    V++         L   ++++  F +     QD S S+ V     L N+   
Sbjct: 226 FAVDQHCYDVLIFPSH-----LKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDD 280

Query: 247 DLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
            L    G       +              G +  A D   + L        ++     +I
Sbjct: 281 ILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKMGCKNIEI 334

Query: 294 IEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT-------D 335
           +     +   K    +    +L+   CS  G           H D  + +D        D
Sbjct: 335 LRETFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVD 394

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       + +    
Sbjct: 395 KLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVVKKALE-----FQDLGNKV 448

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++     + L     I+++ D   +++      +G F   L R
Sbjct: 449 QLYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 492


>gi|319950547|ref|ZP_08024457.1| transcription antitermination protein NusB [Dietzia cinnamea P4]
 gi|319435797|gb|EFV91007.1| transcription antitermination protein NusB [Dietzia cinnamea P4]
          Length = 189

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 40/122 (32%), Gaps = 4/122 (3%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLPRIDAVLDFV 70
             LL     +   +   L  E            D       IV      L R+D+ +   
Sbjct: 21  VSLLFEAELRDADV-VQLAEERRRMGEESQEFHDVAPYTMEIVTGVAERLDRLDSTISEH 79

Query: 71  LI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           L   +L R     + +LR +  ++L+  D  D AVV         D         VN++L
Sbjct: 80  LREWTLERLPAVDRAVLRAAAWELLFGSDEVDAAVVIDQAVLLVSDLSAEKSVPYVNAVL 139

Query: 129 RR 130
            R
Sbjct: 140 DR 141


>gi|254303389|ref|ZP_04970747.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323581|gb|EDK88831.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 155

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 7/134 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
           AR     L+        +   L    D+   +       L++     +R+ +N       
Sbjct: 19  AREEVFKLVFGAEATEATSDELKQDFDIYLQNDEKFIATLNENQLEFIRSSINGIAENYD 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  ++     +    R     + LL V+  +  + +     + +  VE AK    N   
Sbjct: 79  NIKDIIKKNTKNWAYARIGVIERALLIVATYEFSFKNTPIEVIANEIVELAKEY-GNEKS 137

Query: 121 AKLVNSILRRVSRE 134
            + VN IL  + + 
Sbjct: 138 YEFVNGILANIEKN 151


>gi|293192887|ref|ZP_06609731.1| n utilization substance protein B [Actinomyces odontolyticus F0309]
 gi|292819943|gb|EFF78942.1| n utilization substance protein B [Actinomyces odontolyticus F0309]
          Length = 320

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 26/153 (16%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRA--------- 51
            S   AR  ++ ++    ++ +     +L              R++ ++ A         
Sbjct: 8   TSRTKARKRAADVVFEADQRGMGRDPEVLRDLL----------RERRVITAAQTPLPEYS 57

Query: 52  --IVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL--YLDVADYAVVDL 106
             I+      L RID +++       L R       ++RV+V ++L    DV+    +D 
Sbjct: 58  IQIIAGVADSLRRIDDLIEAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDE 117

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
           A+   +         + VN++L  + ++     
Sbjct: 118 AISIVRSI-STDASPRFVNAVLDAIRKDIASSW 149


>gi|154508767|ref|ZP_02044409.1| hypothetical protein ACTODO_01276 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798401|gb|EDN80821.1| hypothetical protein ACTODO_01276 [Actinomyces odontolyticus ATCC
           17982]
          Length = 320

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 26/153 (16%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRA--------- 51
            S   AR  ++ ++    ++ +     +L              R++ ++ A         
Sbjct: 8   TSRTKARKRAADVVFEADQRGMGRDPEVLRDLL----------RERRVITAAQTPLPEYS 57

Query: 52  --IVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL--YLDVADYAVVDL 106
             I+      L RID +++       L R       ++RV+V ++L    DV+    +D 
Sbjct: 58  IQIIAGVADSLRRIDDLIEAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDE 117

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
           A+   +         + VN++L  + ++     
Sbjct: 118 AISIVRSI-STDASPRFVNAVLDAIRKDIASSW 149


>gi|149920268|ref|ZP_01908739.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1]
 gi|149818855|gb|EDM78295.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1]
          Length = 169

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 18/132 (13%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ----------RD-------QILVR 50
           R ++  L+  + R+       L+L + +     +            RD       +   R
Sbjct: 15  RELALWLMCHLERRGEGSRAALELFWTERPEFEVDDDFLGVAGPQMRDIIEDSSARRWAR 74

Query: 51  AIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109
            +    L     +D  +        + R     + +LR++  ++         VV  AV 
Sbjct: 75  RLTEAYLEDAAAVDQAIGAASERWRIERMDRVDRNVLRLAAVELRTQKTPRNVVVAEAVR 134

Query: 110 QAKRDKENRHFA 121
            A R    R  A
Sbjct: 135 LAARYGSERSAA 146


>gi|291459867|ref|ZP_06599257.1| n utilization substance protein B [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417657|gb|EFE91376.1| n utilization substance protein B [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 264

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-S 73
           L     +      + +     S  R + +         V   +  +  +D  ++      
Sbjct: 118 LLKAEEEGDDPDPVGESGLRLSEEREIQKE--------VCGMVGRIEELDRRINEAAEGW 169

Query: 74  SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132
           +  R   +   +LR+++ +IL+ D + D   ++ AV+ AK+       +  VN +L R+ 
Sbjct: 170 TTKRMSRTDLTVLRLALYEILFRDEIPDKVSINEAVDIAKKYGGAESGS-FVNGVLARLL 228

Query: 133 REKIELLQRIAGISIIPE 150
             K   + + A     PE
Sbjct: 229 NPKRSAVTKSAPREKKPE 246


>gi|297623354|ref|YP_003704788.1| NusB antitermination factor [Truepera radiovictrix DSM 17093]
 gi|297164534|gb|ADI14245.1| NusB antitermination factor [Truepera radiovictrix DSM 17093]
          Length = 165

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISL--------TCLLDL---EYGDSAFRLLSQRDQILV 49
           M     AR ++   L    R    L          + +    E  ++    L +      
Sbjct: 1   MARRR-ARELAFRALFQSERGGEPLLEVWEGIRDDVTEQPPDEAEEAYGDPLEEEGLAFA 59

Query: 50  RAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLA 107
             ++         +DA L   L   +  +   +   +LR+++ +IL+  +V     +++A
Sbjct: 60  ERLLRAFHTHREEVDARLSEALEGWTFAQMAQTDLAVLRLALTEILFEPEVPKEVTIEVA 119

Query: 108 VEQAKRDKENRH 119
           V  AKR      
Sbjct: 120 VRIAKRYGGEES 131


>gi|320093590|ref|ZP_08025479.1| N utilization substance protein B [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979461|gb|EFW10934.1| N utilization substance protein B [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 323

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 26/153 (16%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRA--------- 51
            S   AR  ++ ++    ++ +      L              R++ ++ A         
Sbjct: 8   TSRTKARKRAADVVFEADQRGMGRDPEALRDLL----------RERRVITAAQTPLPEYS 57

Query: 52  --IVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL--YLDVADYAVVDL 106
             I+      L RID +++       L R       ++RV+V ++L    DV+    +D 
Sbjct: 58  IQIIAGVADSLRRIDDLIEAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDE 117

Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
           A+   +         + VN++L  + ++     
Sbjct: 118 AISIVRSI-STDASPRFVNAVLDAIRKDIASSW 149


>gi|283797531|ref|ZP_06346684.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
 gi|291074900|gb|EFE12264.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
          Length = 147

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 19/137 (13%)

Query: 3   SGMNARLVSSHLLSCVMR--KRISLTCLLDLEYGDSAFR--------------LLSQRDQ 46
           +    R     LL C     +  +    ++  + +                   L   D 
Sbjct: 2   TRRELREHCFKLLFCADFYPEGET-KEQIEQYFTEPREDDYTSDGVYELIHCPELDVYDS 60

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVV 104
             V+  V   L  L  +D  ++      +  R       +LR+++ +I Y  +V D   +
Sbjct: 61  GYVKNKVEKVLEKLTELDTAINETAEGWTTRRMGKVELTILRLALFEIRYDEEVPDKVAI 120

Query: 105 DLAVEQAKRDKENRHFA 121
           + AVE AK+   +   A
Sbjct: 121 NEAVELAKKFGGDESPA 137


>gi|238013066|gb|ACR37568.1| unknown [Zea mays]
          Length = 239

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
           ++E V+   L+     V+LVP    + +          E     + +   +     + MD
Sbjct: 4   ENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRYREHRFHTSLEKTRRFYPHVNNMD 58

Query: 432 GFFAVALRRL 441
           GFF   L++L
Sbjct: 59  GFFVAKLKKL 68


>gi|313905346|ref|ZP_07838712.1| NusB antitermination factor [Eubacterium cellulosolvens 6]
 gi|313469816|gb|EFR65152.1| NusB antitermination factor [Eubacterium cellulosolvens 6]
          Length = 170

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 32/167 (19%)

Query: 1   MKSGMNARLVSSHLLS--CVMRKRISLTCLLDLEYGDSA-------FRLLSQRDQ----- 46
           MK     R     LL      +        +     +         +  L+  ++     
Sbjct: 1   MK-RSELRETIFRLLFMGQFEKSGEGKNEQIGDYLDEMRSGLIEVPYAKLAAEEETREES 59

Query: 47  -ILVRAI-VNV------------TLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVA 91
              V AI V+                 LP ID  ++         R       ++R++V 
Sbjct: 60  PAFVSAIDVSGEDEEYIRTKLAKITEALPEIDEQINKASRGWKTSRMPKVDLSIIRLAVY 119

Query: 92  QILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           ++++  DV     ++ AVE AK        A  +N IL +++R   +
Sbjct: 120 EMIHDEDVPTGVAINEAVEIAK-HYGGEESATFINGILGQIARNCDQ 165


>gi|301167989|emb|CBW27575.1| putative N utilisation protein [Bacteriovorax marinus SJ]
          Length = 157

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 23/146 (15%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLL---------DLEYGD-----------SAFRLLSQRDQ 46
           AR  S  L+  V+    +L  L+         +    +                L    Q
Sbjct: 10  AREFSFKLIYKVLCGNENLLELMLSKNPKAEYERFMEEFTNSCIEPDEEHPNNQLPSGAQ 69

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVV 104
               ++++        ++  +   L    + + +     LL +   +I  +D      V+
Sbjct: 70  NFALSLIDGVFTNKASLEDEISKHLRKRKINQLEKIDYALLMLGCYEIQNVDATPKAVVI 129

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130
           D  V  A++          +N  L  
Sbjct: 130 DEMVNLARKF-GTADTYSFINGTLDS 154


>gi|262066420|ref|ZP_06026032.1| transcription antitermination factor NusB [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379847|gb|EFE87365.1| transcription antitermination factor NusB [Fusobacterium
           periodonticum ATCC 33693]
          Length = 152

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
           AR     L+        +   L    D+   +       L++     +R+ +N       
Sbjct: 19  AREELFKLVFGAESTEATPDELKQDFDIYLQNDEEFIATLNENQLEFIRSSINGIAENYD 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  ++     +    R     + LL ++  + L+ +     V +  VE AK    N   
Sbjct: 79  NIKDIIKKNTKNWAYSRIGLVERTLLIIATYEFLFKNTPIEVVANETVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + VN IL  
Sbjct: 138 YEFVNGILAN 147


>gi|309364473|emb|CAP24697.2| hypothetical protein CBG_03881 [Caenorhabditis briggsae AF16]
          Length = 482

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 18/236 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDV---SKRR 275
             +W+ D  + +PV   G   + S+LD+CAAPGGK+    +S     +   D       +
Sbjct: 249 PSYWLLDGGSLLPVLALGLQKDDSLLDMCAAPGGKSLLAALSNLPSKIVCNDFKLARLGQ 308

Query: 276 LEKLRCNLDRLHLYAEDIIEM------DAFDYCPKKLFDAVLVDAPCSST--GTIRRHPD 327
           L++           A D   +      D   +   + +D VL D PCS+          +
Sbjct: 309 LKRALMTYVPEESEAVDKFVLKRKDASDVKSWDEFEAYDKVLADVPCSTDRLSVNTDDGN 368

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +  T  T   +     Q K+L+  I  VK GG VV+S C+L    +E VV+  +      
Sbjct: 369 IFSTSSTQQRLDLPLLQTKILVNAIRSVKVGGSVVYSTCTLSPSQNEAVVENAVAVVKND 428

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRIT--PDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +  +  + +     ++  G  R    P     +  + S     +   L RL
Sbjct: 429 FGIEIVEESLHQLV---SHMTASGLYRFHDTPLGALVVPFLPSNFGPMYICKLTRL 481


>gi|269792648|ref|YP_003317552.1| NusB antitermination factor [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100283|gb|ACZ19270.1| NusB antitermination factor [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 148

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K    AR ++  L   +  ++      ++   G           +    A+ +   R   
Sbjct: 7   KKRRRARELALQLGYLMDMRQ---ELGINEVLGSLPLDEEDPEVRDYAVALTSGLYRERQ 63

Query: 62  RIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLD--VADYAVVDLAVEQAKRDKENR 118
           R++ +L + ++     R     +  +R+++ +  YL+  V     +  AVE AK      
Sbjct: 64  RLEGILRERLVGWRPERMVAVDRVAIRLAILE-GYLERLVPFPVAISEAVELAK-LFGTE 121

Query: 119 HFAKLVNSILRRVSRE 134
              + VN +L R+ ++
Sbjct: 122 DSGRFVNGVLGRIFKD 137


>gi|268565033|ref|XP_002639310.1| Hypothetical protein CBG03881 [Caenorhabditis briggsae]
          Length = 457

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 18/236 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDV---SKRR 275
             +W+ D  + +PV   G   + S+LD+CAAPGGK+    +S     +   D       +
Sbjct: 224 PSYWLLDGGSLLPVLALGLQKDDSLLDMCAAPGGKSLLAALSNLPSKIVCNDFKLARLGQ 283

Query: 276 LEKLRCNLDRLHLYAEDIIEM------DAFDYCPKKLFDAVLVDAPCSST--GTIRRHPD 327
           L++           A D   +      D   +   + +D VL D PCS+          +
Sbjct: 284 LKRALMTYVPEESEAVDKFVLKRKDASDVKSWDEFEAYDKVLADVPCSTDRLSVNTDDGN 343

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +  T  T   +     Q K+L+  I  VK GG VV+S C+L    +E VV+  +      
Sbjct: 344 IFSTSSTQQRLDLPLLQTKILVNAIRSVKVGGSVVYSTCTLSPSQNEAVVENAVAVVKND 403

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRIT--PDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +  +  + +     ++  G  R    P     +  + S     +   L RL
Sbjct: 404 FGIEIVEESLHQLV---SHMTASGLYRFHDTPLGALVVPFLPSNFGPMYICKLTRL 456


>gi|255020761|ref|ZP_05292820.1| Transcription termination protein NusB [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969823|gb|EET27326.1| Transcription termination protein NusB [Acidithiobacillus caldus
           ATCC 51756]
          Length = 147

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 41/138 (29%), Gaps = 14/138 (10%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV----TLRFLPR 62
           AR      L            +      D     L   DQ     I        +     
Sbjct: 2   AREALLQALYQWQLNPAPCGEIARQFLEDDE--RLVGADQRFFEDI-WGRLCPVME---T 55

Query: 63  IDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119
           +D  +  V+             + +LR+   ++          +++ AVE +K     + 
Sbjct: 56  LDQAIASVILDRRWQDEVSEVERAILRLGAFELREERQTPYRVIINEAVELSKAFGAEQG 115

Query: 120 FAKLVNSILRRVSREKIE 137
             + +N +L R++ +  +
Sbjct: 116 -HRFINGVLDRLAHQWRQ 132


>gi|291519195|emb|CBK74416.1| transcription antitermination factor NusB [Butyrivibrio
           fibrisolvens 16/4]
          Length = 140

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 11/138 (7%)

Query: 3   SGMNARLVSSHLLS-----CVMRKRISLTCLL----DLEYGDSAFRLLSQRDQILVRAIV 53
           +    R      +           +  +   L    + E  D A    +  D+  ++   
Sbjct: 2   NRHEVRKEVFKAVFMNEFHDADDMKSVIDTFLQGRNNAETEDLAKNNKTPEDEEYIKTKS 61

Query: 54  NVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112
              +  LP ID +++  +      R       L+R+++ +I + ++     ++ AV  A 
Sbjct: 62  EAIIAKLPEIDEMINKSVDGWKTTRMAKVDLTLIRLALYEIKFENIPVGVAINEAVTLAD 121

Query: 113 RDKENRHFAKLVNSILRR 130
                   A  VN  L +
Sbjct: 122 EF-GTDSSAGFVNGALAK 138


>gi|308494046|ref|XP_003109212.1| hypothetical protein CRE_08115 [Caenorhabditis remanei]
 gi|308246625|gb|EFO90577.1| hypothetical protein CRE_08115 [Caenorhabditis remanei]
          Length = 467

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 92/236 (38%), Gaps = 18/236 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEK 278
             +W+ D  + +PV   G   + S+LD+CAAPGGK+    +S     +   D    RL +
Sbjct: 234 PSYWLLDGGSLLPVLALGLQKDESLLDMCAAPGGKSLLAALSNLPSKIVCNDFKLARLGQ 293

Query: 279 LRCNLDRLHLYAEDI---------IEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPD 327
           L+  L        +             D   +   + +D VL D PCS+          +
Sbjct: 294 LKRALMTYVAEDSEAIDKFVLKRKDASDVKTWDEFEAYDKVLADVPCSTDRLSVSTDDGN 353

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +  T  T   +     Q K+L+  +  VK GG VV+S C+L    +E VV+  +  +   
Sbjct: 354 IFSTASTQQRLDLPLLQTKILVNALRSVKVGGSVVYSTCTLSPSQNEAVVENAVAVARND 413

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRIT--PDMLEKIDGVSSGMDGFFAVALRRL 441
             +  +  +  + +     ++  G  R    P     +  + S     +   L RL
Sbjct: 414 FGIETVEESLHQLV---SHMTSSGLYRFHDTPLGALVVPFLPSNFGPMYICKLTRL 466


>gi|291287239|ref|YP_003504055.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
 gi|290884399|gb|ADD68099.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
          Length = 147

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 9/141 (6%)

Query: 1   MKSGMNAR----LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK    AR      +  ++  ++    +   +    +        S  +      +    
Sbjct: 1   MKKNFKARTRGRKFAYMMMYQLIIADYTPKEITKTFWNSVKEEDESVIE--FANRLFTGA 58

Query: 57  LRFLPRIDAVLDFV--LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
              +   D ++        +  R     + +LRV+V ++   +   YAV++  V  A++ 
Sbjct: 59  AESVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHELFRQEAPYYAVINDFVTLARKY 118

Query: 115 KENRHFAKLVNSILRRVSREK 135
             +   A LVN IL  + +  
Sbjct: 119 -SDEKSASLVNGILENIRKNF 138


>gi|53804263|ref|YP_114097.1| N utilization substance protein B [Methylococcus capsulatus str.
           Bath]
 gi|81681940|sp|Q607V0|NUSB_METCA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|53758024|gb|AAU92315.1| N utilization substance protein B [Methylococcus capsulatus str.
           Bath]
          Length = 198

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 9/126 (7%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75
             V  + ++L          ++   +        + +++     L  +DA L   L   +
Sbjct: 75  DEVEEEDVTLEQ-------RASQCQVPDVQVGYFKELLHGVANNLALLDAALAKYLDRPI 127

Query: 76  PRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
                  + +LR+   + +   +     +++ A+  AK         + VN IL RV+ E
Sbjct: 128 DEVDPVERAILRIGCYEFMRRPETPYRVILNEAINLAKEF-GAAQSYRYVNGILDRVAHE 186

Query: 135 KIELLQ 140
              +  
Sbjct: 187 CRAVEM 192


>gi|306820223|ref|ZP_07453865.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551720|gb|EFM39669.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 212

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYA 102
           D   ++  ++  L     ID+ +  VL    ++ R       L+R ++ +I YLD+    
Sbjct: 117 DIGYIKLFISSFLDNKDLIDSEISQVLSEKWTVKRLSKIDLALIRTAITEIKYLDIPYKV 176

Query: 103 VVDLAVEQAKRDKENRHFA 121
            ++ A+E AK+  + +  +
Sbjct: 177 AINEALELAKKYSDEKSSS 195


>gi|17509941|ref|NP_490958.1| hypothetical protein Y39G10AR.21 [Caenorhabditis elegans]
 gi|15375262|gb|AAK95888.1|AC025716_14 Hypothetical protein Y39G10AR.21 [Caenorhabditis elegans]
          Length = 465

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 18/236 (7%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEK 278
             +W+ D  + +PV   G   + S+LD+CAAPGGK+    +S     +   D    RL +
Sbjct: 232 PSYWLLDGGSLLPVLALGLQKDDSLLDMCAAPGGKSLLAALSNLPSKIVCNDFKLARLGQ 291

Query: 279 LRCNLDRLHLYAEDI---------IEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPD 327
           L+  L        +             D   +   + +D VLVD PCS+          +
Sbjct: 292 LKRALMTYVPEDSETIDKFVLKRKDASDVKTWDEFEAYDKVLVDVPCSTDRLSVSTDDGN 351

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387
           +  T  T   +     Q K+L+  +  VK GG VV+S C+L    +E VV+  +      
Sbjct: 352 LFSTGSTQQRLDLPVLQTKILVNALRSVKVGGSVVYSTCTLSPSQNEAVVENAVAVVRND 411

Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRIT--PDMLEKIDGVSSGMDGFFAVALRRL 441
             +V +  +  + +     ++  G  R    P     +  + S     +   L RL
Sbjct: 412 FGIVTVEESLHQLV---SHMTSSGLYRFHDTPLGALVVPFLPSNFGPMYICKLTRL 464


>gi|259501554|ref|ZP_05744456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302191472|ref|ZP_07267726.1| transcription antitermination factor NusB [Lactobacillus iners
           AB-1]
 gi|309805466|ref|ZP_07699511.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 09V1-c]
 gi|309808800|ref|ZP_07702685.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809548|ref|ZP_07703406.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871882|ref|ZP_07731966.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           3008A-a]
 gi|312874396|ref|ZP_07734426.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2052A-d]
 gi|312874533|ref|ZP_07734558.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2053A-b]
 gi|325911876|ref|ZP_08174280.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           143-D]
 gi|325913448|ref|ZP_08175814.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           60-B]
 gi|329919881|ref|ZP_08276819.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           1401G]
 gi|259167072|gb|EEW51567.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308165117|gb|EFO67355.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 09V1-c]
 gi|308167926|gb|EFO70059.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170220|gb|EFO72255.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089924|gb|EFQ48343.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2053A-b]
 gi|311090008|gb|EFQ48422.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2052A-d]
 gi|311092604|gb|EFQ50964.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           3008A-a]
 gi|325476382|gb|EGC79544.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           143-D]
 gi|325477217|gb|EGC80363.1| transcription antitermination factor NusB [Lactobacillus iners UPII
           60-B]
 gi|328936971|gb|EGG33401.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
           1401G]
          Length = 133

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 8/133 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLP 61
           +  + R+++   L    +                   +L  ++       I+   ++   
Sbjct: 2   TQHDVRVIAMQALYLADQVHEHEDV---DAIKKKTMDVLDIKEFPDYAYEILQGVMKEKS 58

Query: 62  RIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENR 118
            IDA L   L     L R       +L V + +I    V    + ++ A+         +
Sbjct: 59  SIDANLAKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSSAK 118

Query: 119 HFAKLVNSILRRV 131
                +N IL   
Sbjct: 119 S-KGFINGILANF 130


>gi|12853112|dbj|BAB29644.1| unnamed protein product [Mus musculus]
 gi|148705819|gb|EDL37766.1| NOL1/NOP2/Sun domain family, member 7, isoform CRA_c [Mus musculus]
          Length = 565

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP---LNSAY 397
              Q + L   + F K    +V+  CS+ K+++E+VV+K L      V++ P        
Sbjct: 286 VQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQPYRLSPPVL 344

Query: 398 WKSIDMAMALSPEGWIRITPDMLEK 422
                  + LS + + R+ P  +  
Sbjct: 345 PLCTLKEIELSMDRFFRLEPSDMNN 369


>gi|239627505|ref|ZP_04670536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517651|gb|EEQ57517.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 149

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 18/137 (13%)

Query: 3   SGMNARLVSSHLLSCVMR--KRISLTCLLDLEYGDSAFR--------------LLSQRDQ 46
           +    R     +L        +      LD  +                     L   D 
Sbjct: 2   TRRELREHCFKMLFSADFYPTQEEAVAQLDQYFQSPEEYDTDPEGVLQVLHKVELKSEDS 61

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVV 104
             ++A     +  +P IDA L+ V       R       +LR+++ ++LY + + +   +
Sbjct: 62  EYLQARTVNIIDKIPEIDAKLNEVAAGWKTKRMGKVELTILRLALFEMLYDENIPEKVSI 121

Query: 105 DLAVEQAKRDKENRHFA 121
           + AVE AK+   N   A
Sbjct: 122 NEAVELAKKFGGNDSPA 138


>gi|146329208|ref|YP_001209382.1| transcription antitermination factor NusB [Dichelobacter nodosus
           VCS1703A]
 gi|146232678|gb|ABQ13656.1| transcription antitermination factor NusB [Dichelobacter nodosus
           VCS1703A]
          Length = 145

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--DQILVRAIVNVTLRFLP 61
              AR      L            + + +  D+    +     D      I   T     
Sbjct: 14  RSQARRQLLQGLYQWQIIGDDAEIVKENQMIDARAGEIDHDYFDAAWAY-ITTNT----E 68

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHF 120
           ++D      +  ++         +L + + ++   +D+    +++ AVE AK+   +  +
Sbjct: 69  QLDCCAADFIRRNMATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVELAKQFGSDDGY 128

Query: 121 AKLVNSILRRVSREK 135
              VN +L + ++  
Sbjct: 129 K-FVNGVLDQCAKRH 142


>gi|323484853|ref|ZP_08090209.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14163]
 gi|323693777|ref|ZP_08107972.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14673]
 gi|323401849|gb|EGA94191.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14163]
 gi|323502163|gb|EGB18030.1| transcription antitermination factor NusB [Clostridium symbiosum
           WAL-14673]
          Length = 171

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 41  LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DV 98
           L   D   V   V   +  +P +D+ ++ +    +  R       +LR+++ +I Y  DV
Sbjct: 79  LDVFDGGYVTNKVERIIEKIPDLDSRINEIAKGWTTKRMGKVELTILRLALFEIQYDEDV 138

Query: 99  ADYAVVDLAVEQAKRDKENRHFA 121
            +   ++ AVE AK+   +   +
Sbjct: 139 PEKVAINEAVELAKKFGGDDSPS 161


>gi|315038645|ref|YP_004032213.1| transcriptional termination factor [Lactobacillus amylovorus GRL
           1112]
 gi|325957127|ref|YP_004292539.1| transcription termination factor [Lactobacillus acidophilus 30SC]
 gi|312276778|gb|ADQ59418.1| transcriptional termination factor [Lactobacillus amylovorus GRL
           1112]
 gi|325333692|gb|ADZ07600.1| transcription termination factor [Lactobacillus acidophilus 30SC]
          Length = 130

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  ++   +          + LS       + ++   L     +
Sbjct: 4   HESRKVAMQAIYLANQEPDLNAEEVEAKVVTALNLKQLS----AYSKKLIEGVLENRADL 59

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R    +  ++ V++ +I   D +   A V+ A+       E +  
Sbjct: 60  QSALSEHLKKGWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDEFAEPKE- 118

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 119 KPFINGMLANF 129


>gi|225570633|ref|ZP_03779656.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM
           15053]
 gi|225160551|gb|EEG73170.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM
           15053]
          Length = 132

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 8/125 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYG--DSAFRLLSQRDQILVRAIVNVTLR 58
           MK     R     ++ C+          L  +    +       + D   +         
Sbjct: 1   MK-RTQLREHIFKMVFCMEFCG---EEELPEQLALYEEQLDSAGEEDLKYISGKSRNIAA 56

Query: 59  FLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116
               ID +++  +      R       +LR++V ++ +  DV     +D AVE AK+   
Sbjct: 57  KTEEIDRLINEHVTGWKTGRMNKVDLTILRLAVYEMNWDEDVPTGVAIDEAVELAKKYSG 116

Query: 117 NRHFA 121
               A
Sbjct: 117 EEGPA 121


>gi|118090581|ref|XP_420736.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 615

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 63/465 (13%), Positives = 129/465 (27%), Gaps = 84/465 (18%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDA-V 66
           ++ +    +R +     +L     +S   +L+ +D   Q L   +    L++   ++  +
Sbjct: 17  AAKI-FQGIRNKKPKDRMLVRYGDESVSPMLTLKDEYSQRLSYELAFSALKYQDLLEEML 75

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
           LD  +  S        +   RV     +  +    A V        R +     A     
Sbjct: 76  LDSHVYPSHSIVNREFEA--RV-----ISDEEEPIAEVREIENFLCRFRIKLAAA----- 123

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
                          ++    +PE  ++           L      +     D+      
Sbjct: 124 -----LARCRIKYDALSIEYFLPETIRK--HEQRASALPLCAWINILKTSPQDVFRDLKS 176

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDASASIPVQ 235
             +    +          L +    ++           +L  F++    +QD S  + V 
Sbjct: 177 TGFTEVESVSDFKGYTYCLDQHCHDVLLFPSSLKDELLNLDLFSDCRLLLQDKSRCLAVH 236

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-------TALDVSKRRLEKLRCNLDRLHL 288
               L +     + A  G       ++  +             +  +  +L      +  
Sbjct: 237 SVQALLSTDDDVILAHLGSHLTVAHMAALRHDSTSTVFVCGVKTSAKAAELGDLFSHMGC 296

Query: 289 YAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTG-------TIRRHPDVLWTR----- 332
               ++  D  +  PK         +L+   CS  G        +  H D    +     
Sbjct: 297 KNIQLLHEDFTEIEPKDPRLQNAKVILLVPQCSGLGFSNPIDFILTEHGDAGLLKDLYQG 356

Query: 333 --DTDDIVKSACFQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
               D +   A  Q   L+  + F V+    +V+   S+  +++EEVVQK L       +
Sbjct: 357 SVSKDKLCILAERQLNELMHAMKFQVQS---IVYCTSSVYPEENEEVVQKALECGVKGKK 413

Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
           L P                        P +        S  D FF
Sbjct: 414 LKPFRPI--------------------PPVFAACPNPESCTDAFF 438


>gi|290968307|ref|ZP_06559849.1| transcription antitermination factor NusB [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781666|gb|EFD94252.1| transcription antitermination factor NusB [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 141

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 8   RLVSSHLLSCVMRKR----ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           R  +  +L                 +       A R L+   +     +V         +
Sbjct: 7   RQEALEILYSREFHAPDDIQYAEQEIFDHTAAEA-RALTPERRAYCMYLVQTVGARKEEL 65

Query: 64  DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKENRHF 120
           D ++  +     + R  Y+ + ++R+++ ++ Y    V    V++ AV  AK    +   
Sbjct: 66  DRIIGSLAKDWDIQRLNYTEKNIMRLALCEMKYPKEPVPTAVVLNEAVLLAKEYCSSE-A 124

Query: 121 AKLVNSILRRVSRE 134
           A+ VN +L   SR 
Sbjct: 125 ARFVNGVLGTYSRM 138


>gi|309804286|ref|ZP_07698363.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 11V1-d]
 gi|312872493|ref|ZP_07732562.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2062A-h1]
 gi|315653399|ref|ZP_07906321.1| transcription antitermination protein NusB [Lactobacillus iners
           ATCC 55195]
 gi|308163689|gb|EFO65959.1| transcription antitermination factor NusB [Lactobacillus iners
           LactinV 11V1-d]
 gi|311092075|gb|EFQ50450.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
           2062A-h1]
 gi|315489324|gb|EFU78964.1| transcription antitermination protein NusB [Lactobacillus iners
           ATCC 55195]
          Length = 133

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 8/133 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLP 61
           +  + R+++   L    +                   +L  ++       I+   ++   
Sbjct: 2   TQHDVRVIAMQALYLADQVHEHEDV---DAIKKKTMDVLDIKEFPDYAYEILQGVMKEKS 58

Query: 62  RIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENR 118
            IDA L   L     L R       +L V + +I    V    + ++ A+         +
Sbjct: 59  SIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSSAK 118

Query: 119 HFAKLVNSILRRV 131
                +N IL   
Sbjct: 119 S-KGFINGILANF 130


>gi|331084732|ref|ZP_08333820.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330410826|gb|EGG90248.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 134

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 8   RLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R     +L  +  + +  +   L L   +      ++++   +R         +  ID  
Sbjct: 7   REHIFRILFRIEFQPKEEMEEQLALYLEELESAKDTEKE--YIRTKYAAIAEKVEMIDEK 64

Query: 67  LD-FVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           ++  V      R       +LR++V +I +  +V     ++ AVE AKR       +
Sbjct: 65  INASVTGWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVAINEAVELAKRYGGEESPS 121


>gi|156086984|ref|XP_001610899.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798152|gb|EDO07331.1| conserved hypothetical protein [Babesia bovis]
          Length = 382

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 290 AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
              I   D  ++  K+   FD + V  P  S         + W++       +       
Sbjct: 229 NVQITCYDGMNHKLKRFGTFDRIFVRMPPHSYYAT----PMSWSKRNLKDDSTKALNA-- 282

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           L   ISF+KPGG +++   SLD  ++E ++  VL+S
Sbjct: 283 LTTAISFLKPGGTILYVTESLDPIENELIIHTVLQS 318


>gi|10177133|dbj|BAB10423.1| unnamed protein product [Arabidopsis thaliana]
          Length = 325

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 81/285 (28%), Gaps = 53/285 (18%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
               KL  V    G   +      I     + +G+ +  DA++   V   G      VLD
Sbjct: 53  EINCKLEKVNWLPGFYSIPP-DVHIARTKAYQQGMMYGIDAASGAAVSALGISPGDHVLD 111

Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY------------------ 289
           LCAAPG           K        +  ++         L                   
Sbjct: 112 LCAAPGESCVDDHEDTFKQWTSRRPYKERKQEAKARKNSVLPQNGQAEIIFYGQGSGVIG 171

Query: 290 ---AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDD 336
               E    +D  DY     +D VLVDA C+  G+I+       W               
Sbjct: 172 LKKNELYRSLDQNDYASYG-YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERT 230

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396
                  Q  LL  G   +K  G +V+S CS                     +L   ++ 
Sbjct: 231 DTNLKALQLNLLRNGFRLLKEAGTLVYSTCS----------------GKTNRKLGYDDAE 274

Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
             +           G    TP    + D  +S   G F   +R+L
Sbjct: 275 LQEIEMAKDWPCRSGR---TP-KTLRFDPSTSATSGLFVAKIRKL 315


>gi|257465920|ref|ZP_05630231.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917076|ref|ZP_07913316.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058823|ref|ZP_07923308.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
 gi|313684499|gb|EFS21334.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
 gi|313690951|gb|EFS27786.1| transcription antitermination protein NusB [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 134

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR      +     +  S+    +  +         +  ++ +       +     
Sbjct: 2   TRREAREELFKWIFQTEIQGNSVEEAFEHSFLREEIEK-DEVSKVFLERYRKGMVEHQEE 60

Query: 63  IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +   ++  +    LPR  Y  + LL+++V +I + D+    +V+ AVE AK    +    
Sbjct: 61  VAEKIEAAMTDWDLPRIGYVEKSLLKIAVYEIYFEDLPVEIIVNEAVEIAK-IYGDVKTH 119

Query: 122 KLVNSILRRVSRE 134
           + +N +L +V + 
Sbjct: 120 EFINGVLAKVIKM 132


>gi|78183594|ref|YP_376028.1| transcription antitermination protein NusB [Synechococcus sp.
           CC9902]
 gi|78167888|gb|ABB24985.1| NusB antitermination factor [Synechococcus sp. CC9902]
          Length = 211

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +      +   +R    IDA LD V+    L R     + +LR++V  +  +        
Sbjct: 117 RSAAMERIAQVIRQRESIDARLDQVMEGWRLGRLPRIDRDILRLAVVDLQTMGTPAPVAF 176

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           + AVE A R  + +   +++N +LRR   
Sbjct: 177 NEAVELANRYSDEQGR-RMINGVLRRFHD 204


>gi|260438372|ref|ZP_05792188.1| transcription antitermination factor NusB [Butyrivibrio crossotus
           DSM 2876]
 gi|292808958|gb|EFF68163.1| transcription antitermination factor NusB [Butyrivibrio crossotus
           DSM 2876]
          Length = 142

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 3   SGMNARLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRL--------LSQRDQILVRAIV 53
           +    R     +L         S    ++L + +             L  +    +   V
Sbjct: 2   NRTALRETVFKVLFRYEFHDSESFAGQMNLFFAEYPESGDEEENWPALDSKSAEEITGKV 61

Query: 54  NVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQA 111
              L  +  ID V+        + R   +   ++R++V +ILY D + +   +  AV+ A
Sbjct: 62  TDILCHIDEIDKVISEKSEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAVKLA 121

Query: 112 KRDKENRHFAKLVNSILRR 130
           K+   +      VN +L +
Sbjct: 122 KKY-GDEKAYGFVNGVLAK 139


>gi|190570484|ref|YP_001974842.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019243|ref|ZP_03335050.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356756|emb|CAQ54115.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995352|gb|EEB55993.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 160

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 3   SGMNARLVSSHLLSC---VMRKRISLT----CLLDLEYGDSAFRLLSQRDQILVRAIVNV 55
               AR ++  +      V   + +       L D            + +   +  ++  
Sbjct: 13  KRSTARFLAVQIAYSNIFVSYNKSTFKLENCELKDYISTLKDIFECEEFEHQFLENLLCK 72

Query: 56  TLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113
            ++     D +++  L    SL R       +LR++V +++  D     V++     A  
Sbjct: 73  VIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRIAVCELIDFDTPAPIVINEYTNIASD 132

Query: 114 DKENRHFAKLVNSILRR 130
             +  +    +N +L +
Sbjct: 133 LLDAPNKIGFINGLLDK 149


>gi|73951521|ref|XP_536247.2| PREDICTED: similar to Y53F4B.4a isoform 1 [Canis familiaris]
          Length = 590

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L    +  ++ P
Sbjct: 278 SEDKLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVYPEENEAVVKKALEFQDLGNKVQP 336

Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          + LS + + R+ P  +          +G F   L R
Sbjct: 337 YRLSPPVLPMCSLKEIHLSTDKFFRMEPSEI---------TNGCFLSVLTR 378


>gi|73951519|ref|XP_863122.1| PREDICTED: similar to Y53F4B.4a isoform 2 [Canis familiaris]
          Length = 428

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
             D +   A  Q + L   + F K    VV+  CS+  +++E VV+K L    +  ++ P
Sbjct: 116 SEDKLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVYPEENEAVVKKALEFQDLGNKVQP 174

Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                          + LS + + R+ P  +          +G F   L R
Sbjct: 175 YRLSPPVLPMCSLKEIHLSTDKFFRMEPSEI---------TNGCFLSVLTR 216


>gi|75076791|sp|Q4R7Q1|NSUN7_MACFA RecName: Full=Putative methyltransferase NSUN7; AltName:
           Full=NOL1/NOP2/Sun domain family member 7
 gi|67969032|dbj|BAE00871.1| unnamed protein product [Macaca fascicularis]
          Length = 702

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 68/465 (14%), Positives = 138/465 (29%), Gaps = 64/465 (13%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAV-LDFV 70
           +   +R   S   +L     +         DQ   R    +    L++   ++ + +D  
Sbjct: 53  IFQGIRIEKSAQKVLIKYGNEPLRSFSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA----KLVNS 126
           +  S        Q   RV     L  +    + V          K     A    ++ + 
Sbjct: 113 IFPSTTIPDRKFQT--RV-----LSDNEESISEVQEVENLLNSFKIKLAAALARCRIKHD 165

Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186
            L         + ++    S +P +          +E    +     + +   L +   +
Sbjct: 166 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV 225

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246
                    V++         L   ++++  F +     QD S S+ V     L N+   
Sbjct: 226 FAVDQHCYDVLIFPSH-----LKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDD 280

Query: 247 DLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
            L    G       +              G +  A D   + L        ++     +I
Sbjct: 281 ILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKMGCKNIEI 334

Query: 294 IEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT-------D 335
           +     +   K    +    +L    CS  G           H D  + +D        D
Sbjct: 335 LRETFINIESKDHRLQKVKVILPLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVD 394

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395
            +   A  Q + L   + F K    VV+  CS+  +++E VV+K L       + +    
Sbjct: 395 KLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVVKKALE-----FQDLGNKV 448

Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
             ++     + L     I+++ D   +++      +G F   L R
Sbjct: 449 QLYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 492


>gi|325661675|ref|ZP_08150298.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471928|gb|EGC75143.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 134

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 8   RLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R     +L  +  + +  +   L L   +      ++++   +R         +  ID  
Sbjct: 7   REHIFRILFRIEFQPKEEMEEQLALYLEELESAKDTEKE--YIRTKYAAIAEKVEMIDEK 64

Query: 67  LD-FVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           ++  V      R       +LR++V +I +  +V     ++ AVE AKR       +
Sbjct: 65  INASVTGWKTSRMGKVDLTILRLAVYEIEWDEEVPQGVAINEAVELAKRYGGEESPS 121


>gi|331082309|ref|ZP_08331435.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330400795|gb|EGG80396.1| transcription antitermination factor NusB [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 135

 Score = 56.4 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 7/118 (5%)

Query: 8   RLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
           R     LL              +   +        L   +Q  +     +    L  ID 
Sbjct: 7   REHIFKLLFLGEFNETEEMPEQI---QLYFEGLSDLQPTEQAYMENKYTLVKEHLEEIDV 63

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           +L+         R       +LR++V ++ Y  DV     ++ AVE +K    +   +
Sbjct: 64  LLNEKSAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISKSFGGDDSAS 121


>gi|17229252|ref|NP_485800.1| transcription antitermination protein NusB [Nostoc sp. PCC 7120]
 gi|22095953|sp|Q8YW56|NUSB_ANASP RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|17130850|dbj|BAB73459.1| transcription termination factor [Nostoc sp. PCC 7120]
          Length = 211

 Score = 56.4 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVL 67
           + ++L   +    +    L           L+ +D+        +V +       ID  +
Sbjct: 79  ARNMLQEAISYTQTAINQLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERSVIDEQI 138

Query: 68  -DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
              ++   + R     + +LR++VA++++ ++ +   ++ AVE AKR   +    + +N 
Sbjct: 139 TSALVDWQVTRLAQIDRDILRIAVAEMMFFNLPNSVAINEAVELAKRYSGDEG-HRFING 197

Query: 127 ILRR 130
           +LRR
Sbjct: 198 VLRR 201


>gi|327183851|gb|AEA32298.1| transcription termination factor [Lactobacillus amylovorus GRL
           1118]
          Length = 130

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  ++   +          + LS       + ++   L     +
Sbjct: 4   HESRKVAMQAIYLANQEPDLNAEEVEAKVVAALNLKQLS----AYSKKLIEGVLENRVDL 59

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R    +  ++ V++ +I   D +   A V+ A+       E +  
Sbjct: 60  QSALSEHLKKGWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDEFAEPKE- 118

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 119 KPFINGMLANF 129


>gi|160902466|ref|YP_001568047.1| NusB antitermination factor [Petrotoga mobilis SJ95]
 gi|160360110|gb|ABX31724.1| NusB antitermination factor [Petrotoga mobilis SJ95]
          Length = 151

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 55/140 (39%), Gaps = 4/140 (2%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K  M  R +    L  +  K + L  +L      +    L +   +  +  +    +   
Sbjct: 14  KKRMM-RKLIFESLFQLSIKDVKLDNILFTFEKLNEQAHLEESYYLEAKQYIEDIYKNKN 72

Query: 62  RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
             DA+++       + R     + ++R+ + +++   D+    +++ + E  K     + 
Sbjct: 73  EYDALINKYSEGWRVERIGNIEKTVMRIFIYELINKKDIPVKVILNESTELTKTY-ATQK 131

Query: 120 FAKLVNSILRRVSREKIELL 139
            A  VN I+ +++R +  ++
Sbjct: 132 AAAFVNGIMDKIARSQASIM 151


>gi|119613376|gb|EAW92970.1| hypothetical protein FLJ14001, isoform CRA_a [Homo sapiens]
          Length = 427

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
              T             D +   A  Q + L   + F K    VV+  CS+  +++E VV
Sbjct: 101 HEDTEFLKDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVV 159

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +K L       + +      ++     + L     I+++ D   +++      +G F   
Sbjct: 160 KKALE-----FQDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSI 213

Query: 438 LRR 440
           L R
Sbjct: 214 LTR 216


>gi|257452280|ref|ZP_05617579.1| transcription antitermination protein NusB [Fusobacterium sp.
           3_1_5R]
          Length = 138

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR      +     +  S+    +  +         +  ++ +       +     
Sbjct: 6   TRREAREELFKWIFQTEIQGNSVEEAFEHSFLREEIEK-DEVSKVFLERYRKGMVEHQEE 64

Query: 63  IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +   ++  +    LPR  Y  + LL+++V +I + D+    +V+ AVE AK    +    
Sbjct: 65  VAEKIEAAMTDWDLPRIGYVEKSLLKIAVYEIYFEDLPVEIIVNEAVEIAK-IYGDVKTH 123

Query: 122 KLVNSILRRVSRE 134
           + +N +L +V + 
Sbjct: 124 EFINGVLAKVIKM 136


>gi|242018251|ref|XP_002429592.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212514559|gb|EEB16854.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 512

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 6/168 (3%)

Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLR 280
             + + D +  + +         +V D+    G K   ++ +      +  +   +E+  
Sbjct: 285 YKYLLMDGADLLTILALDLQFGDAVFDMIPNSGTKAFSILQTNLVKILVCNTCNEMEEFF 344

Query: 281 CNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT--RDT 334
            N    +  A      +  +D  D     LFD +L+D  C+       +PD  +   R  
Sbjct: 345 KNYLLDYSPAWKDTLLLTSVDFDDPYYHNLFDKILLDIFCTDDRECLTNPDDNYYSVRKF 404

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382
            D +K    Q   L   +  VKPGG VV++  ++    ++ VV   +R
Sbjct: 405 RDRLKLPQNQTITLANALKMVKPGGTVVYTTGTMSPVQNDGVVDAAIR 452


>gi|160947152|ref|ZP_02094319.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
 gi|158446286|gb|EDP23281.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
          Length = 134

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR     L+  +          ++       +  L   +   +R      +  L  
Sbjct: 2   TRSEAREWCMKLIYQLSIHNNFKCDEIESFIE---YFDLPSSEVKYIRKNCKSIIDNLDN 58

Query: 63  IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           ID ++   L    +  R       +LRV+V +I YL D+ +   ++ A+E A +   +  
Sbjct: 59  IDNIIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDAS 118

Query: 120 FA 121
           + 
Sbjct: 119 YK 120


>gi|295100829|emb|CBK98374.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii L2-6]
          Length = 144

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR  +  L        I L   LD  +       +        + ++         
Sbjct: 6   PRREARENAFLLAFSQTFGDIPLQEALDNHHECDEEHPVDV----FGQRLLRAYYEHSAE 61

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           +D ++   L + ++ R       +LR+ +A++LY D      V++ AVE  K+   +  +
Sbjct: 62  VDDLISAHLRNWTMERLPRVSLTVLRLGLAEMLYGDEKKPGVVINEAVELTKKYGADEDY 121


>gi|289523061|ref|ZP_06439915.1| transcription antitermination factor NusB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503604|gb|EFD24768.1| transcription antitermination factor NusB [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 151

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           AR ++  LL  +  +        D       F   S+        +V         ID +
Sbjct: 9   AREIALQLLYALDIRN---DQTPDEAMALFPFDGESEEVMNYAIWLVKEIWGKRVEIDNL 65

Query: 67  LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124
           +   +      R      + +R+++ + +Y   V     +  A+E AKR     +  + V
Sbjct: 66  IRMHITGWRPERMVTVDLEAIRLALFEGVYSKVVPIPVAISEAIELAKRF-GTENSGRFV 124

Query: 125 NSILRR 130
           N +L +
Sbjct: 125 NGVLGK 130


>gi|254445455|ref|ZP_05058931.1| transcription antitermination factor NusB [Verrucomicrobiae
           bacterium DG1235]
 gi|198259763|gb|EDY84071.1| transcription antitermination factor NusB [Verrucomicrobiae
           bacterium DG1235]
          Length = 133

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVV 104
                +++  +     ID  +  +  +    R       +LR++  ++L+  D+     +
Sbjct: 34  SFAEELIHGMVENSEDIDDKIMGLAKNWDFSRIAKIDLAILRLAAYELLFRKDIPPVVTI 93

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI 145
           + A++ +K         + VN IL ++  E     +  +  
Sbjct: 94  NEAIDLSKEF-STAESRRFVNGILDKLKGELDRPSRTASWE 133


>gi|169350501|ref|ZP_02867439.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
 gi|169292821|gb|EDS74954.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
          Length = 134

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 1   MKSGMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
           MK       R  +   +   +   I+   + +    D       + D      +++    
Sbjct: 1   MKKYRKKLIREKAVIAIYQKLLIDITTEEVYNYLDSDKELAN-DKDDYDYCVMLISSIAN 59

Query: 59  FLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
            L +  A +   L     L R       +L V   ++L  D +   +++ AVE +K+  +
Sbjct: 60  NLEKYKAEVAKHLKKGWSLERLSKMELAILLVGCYELLETDQSKEVIINEAVELSKKYCD 119

Query: 117 NR 118
           + 
Sbjct: 120 DD 121


>gi|167627528|ref|YP_001678028.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668097|ref|ZP_04755675.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876632|ref|ZP_05249342.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597529|gb|ABZ87527.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842653|gb|EET21067.1| transcription termination factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 141

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        + + L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYTVQALYQKKVADHTFSELKTQYYADNAERHYTDWD--LFYRLMDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 I+  +     + +    Y    +L+V++A+++  L+     ++   VE      
Sbjct: 59  RENQDTINNYIQDNSKNGIESINYVDYAVLQVAIAELIECLENPYQIIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   VN++L+ 
Sbjct: 119 TEEGYK-FVNAVLQN 132


>gi|71651681|ref|XP_814513.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879492|gb|EAN92662.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 510

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
             Q  LL  G S +KPGG +V+  CS   + +E +V++
Sbjct: 365 QIQLNLLRNGYSQLKPGGTLVYCTCSFTYEQNEFIVRE 402


>gi|71658948|ref|XP_821200.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886572|gb|EAN99349.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 510

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
             Q  LL  G S +KPGG +V+  CS   + +E +V++
Sbjct: 365 QIQLNLLRNGYSQLKPGGTLVYCTCSFTYEQNEFIVRE 402


>gi|308272551|emb|CBX29155.1| hypothetical protein N47_J01360 [uncultured Desulfobacterium sp.]
          Length = 388

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-----D 300
           LD     GG    +  +  +V A D+SK  +E  + N     +        + F      
Sbjct: 220 LDCFCYSGGFALNMAKNCCQVEAFDISKDAIELSKKNALLNGMENISFEVDNVFDRLKVY 279

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              KK FD +++D P              + +    +  +A   +++  + +  + PGGI
Sbjct: 280 DSQKKKFDTIVLDPPA-------------FAKSRAHVQAAARGYKEINFRALRMLNPGGI 326

Query: 361 VVFSNCSLDKQD 372
           ++ ++CS    +
Sbjct: 327 LITASCSQHIDE 338


>gi|90082132|dbj|BAE90347.1| unnamed protein product [Macaca fascicularis]
          Length = 380

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 23/169 (13%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E +   P F        ++Q+  +++   +        +LDLCAAPGGKT  +   +   
Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309
            +V A+D    ++EK++ N   L L +      D                     + FD 
Sbjct: 260 GEVIAMDKIFSKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDR 319

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
           +L+DAPCS  G   + P++  T    ++      QRKL    +  +KPG
Sbjct: 320 ILLDAPCSGMG---QRPNMACTWSLKELASYQPLQRKLFTAAVQLLKPG 365


>gi|52840964|ref|YP_094763.1| transcription termination factor NusB [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628075|gb|AAU26816.1| transcription termination factor NusB [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 123

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89
           ++E        + + D      ++      +  ++A L   L   +         +LR+ 
Sbjct: 8   EIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEASLLPYLDREINALNPIELTVLRIG 67

Query: 90  VAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             ++ +  ++    ++D +V   K    ++   + VN +L  
Sbjct: 68  SFELFHCPEIPYKVILDESVSLTKEF-GSQEGYRYVNGVLNN 108


>gi|259507351|ref|ZP_05750251.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium efficiens YS-314]
 gi|259165062|gb|EEW49616.1| N utilization substance protein B family protein (protein NusB)
           [Corynebacterium efficiens YS-314]
          Length = 167

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
             +L     + +  +  + D +   +A   +         AI+N     L  ID +L   
Sbjct: 1   MDILFEAESRDVDPVAIIDDRKTLSNAVDPVVAPVAEYTEAIINGVAVELDTIDDLLSEH 60

Query: 71  LISS--LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           +  +  L R     + +LRV+  ++LY  DV     V  AVE A +   ++  A  +N+ 
Sbjct: 61  IADTWLLERLPSVDRAVLRVACWEMLYNPDVPVTTAVVEAVEIASQYSTDKAGA-YINAT 119

Query: 128 LRRVSREKIELLQRIAGI-----SIIPEWFKERLENFYGKERVL 166
           L  ++ +  EL +R A       S  P    +  E    ++   
Sbjct: 120 LDNMASKVDELRERAANPGAVSGSDAPVAPWDDSEELPAEDEAE 163


>gi|67968592|dbj|BAE00655.1| unnamed protein product [Macaca fascicularis]
          Length = 426

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
              T             D +   A  Q + L   + F K    VV+  CS+  +++E VV
Sbjct: 101 HEDTEFLKDHSQGGISVDKLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVV 159

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +K L       + +      ++     + L     I+++ D   +++      +G F   
Sbjct: 160 KKALE-----FQDLGNKVQLYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSI 213

Query: 438 LRR 440
           L R
Sbjct: 214 LTR 216


>gi|325115788|emb|CBZ51343.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 810

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           G   ++P G++V+S CS  +  +E+VV+  L        L PL     +++     
Sbjct: 621 GFDLLRPNGLLVYSTCSKCEDQNEQVVRDFL-RCNDAAALYPLPCRGLRNVASGEG 675


>gi|269120364|ref|YP_003308541.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
 gi|268614242|gb|ACZ08610.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
          Length = 130

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
               R     LL         +   L     ++      + D   +R  +         I
Sbjct: 3   RRKLREEIFKLLFERELIDNDMDVRLAEVLSENNITK--EEDIEFMREYIKNVTEHKESI 60

Query: 64  -DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
            D +   ++  S        + LL++S  +I         V++  VE AK+  E++
Sbjct: 61  EDKIKSKLVGWSFDILGTVEKTLLKMSFYEITEAGTGHEIVINETVELAKKYGEDK 116


>gi|121700599|ref|XP_001268564.1| NOL1/NOP2/sun domain protein, putative [Aspergillus clavatus NRRL
           1]
 gi|119396707|gb|EAW07138.1| NOL1/NOP2/sun domain protein, putative [Aspergillus clavatus NRRL
           1]
          Length = 565

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 41/140 (29%)

Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKV----LRSSPIP 387
           D   + K +  Q +++   ++F  P  I V +S CS+   ++E VV +V    +  +   
Sbjct: 399 DPARLTKLSNLQARIVEHALAF--PAAIRVTYSTCSIHLIENEAVVSRVQASEVARARGW 456

Query: 388 ----VELVPLNSAYWKSIDMA-----------------------MALSPEGWIRITPDML 420
                E  P     W    +                             EG +R      
Sbjct: 457 RVMRREEQPAGMKAWPHRGVRTESRYGDAEGECAPEGAAAAVTLTDEELEGCLRCW---- 512

Query: 421 EKIDGVSSGMDGFFAVALRR 440
               G   G+ GFF     R
Sbjct: 513 ---QGDDEGLGGFFVAGFVR 529


>gi|116621453|ref|YP_823609.1| SAM-dependent methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224615|gb|ABJ83324.1| SAM-dependent methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 387

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
             LD   + GG    L      V A+D S   LE  R N     +   D  E D      
Sbjct: 217 RALDCFTSTGGFALHLAPKCEHVEAVDSSGPALEAARANSTANGIDNIDWNEAD------ 270

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
             +FD +   A      ++       + ++   +  +    +++ L+ +  ++PGGI+V 
Sbjct: 271 --VFDLLSGYANARRQFSMVVLDPPAFAKNKRSLDPAISAYKEINLRAMRLLQPGGILVT 328

Query: 364 SNCSLDKQD 372
            +CS    +
Sbjct: 329 CSCSHHLSE 337


>gi|15451438|dbj|BAB64523.1| hypothetical protein [Macaca fascicularis]
          Length = 376

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377
              T             D +   A  Q + L   + F K    VV+  CS+  +++E VV
Sbjct: 51  HEDTEFLKDHSQGGISVDKLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVV 109

Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437
           +K L       + +      ++     + L     I+++ D   +++      +G F   
Sbjct: 110 KKALE-----FQDLGNKVQLYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSI 163

Query: 438 LRR 440
           L R
Sbjct: 164 LTR 166


>gi|322821446|gb|EFZ27767.1| hypothetical protein TCSYLVIO_6019 [Trypanosoma cruzi]
          Length = 510

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379
             Q  LL  G S +KPGG +V+  CS   + +E +V++
Sbjct: 365 QIQLNLLRSGYSQLKPGGTLVYCTCSFTYEQNEFIVRE 402


>gi|298346844|ref|YP_003719531.1| putative transcription antitermination protein NusB [Mobiluncus
           curtisii ATCC 43063]
 gi|298236905|gb|ADI68037.1| possible transcription antitermination protein NusB [Mobiluncus
           curtisii ATCC 43063]
          Length = 174

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVV 104
                I+      L RIDA L        L R       ++RV+  +IL+  DV     +
Sbjct: 35  AYAVEILEGVAEHLERIDAALATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAI 94

Query: 105 DLAVEQAKRDKENRH 119
             A++ A+    +  
Sbjct: 95  TAAMQIAEERSTDES 109


>gi|284051645|ref|ZP_06381855.1| transcription antitermination protein NusB [Arthrospira platensis
           str. Paraca]
 gi|291566673|dbj|BAI88945.1| transcription antitermination protein NusB [Arthrospira platensis
           NIES-39]
          Length = 210

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 59  FLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
               +D+ L+  +    L R  +  + +LR++V ++LY+ V +   V+ AVE AKR  ++
Sbjct: 126 HREALDSCLEAAMVDWQLGRLPHIDRDILRIAVTELLYMGVQEQIAVNEAVELAKRYSDH 185

Query: 118 RHFAKLVNSILRRVSREKIEL 138
             + + +N +LRRV  +    
Sbjct: 186 NSY-RFINGVLRRVVDQMKTQ 205


>gi|302916869|ref|XP_003052245.1| hypothetical protein NECHADRAFT_2583 [Nectria haematococca mpVI
           77-13-4]
 gi|256733184|gb|EEU46532.1| hypothetical protein NECHADRAFT_2583 [Nectria haematococca mpVI
           77-13-4]
          Length = 480

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 341 ACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSEEVVQKVL------RSSPIPVELVPL 393
           + FQ  LL     F  P    + +S CS+  Q++E VV + L        +   +     
Sbjct: 376 SGFQLTLLQHAFRF--PSARKITYSTCSVHMQENERVVTRALESKIAKERNWRILRRTDQ 433

Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
            S   +     +  +      +    +        G+ GFF  A  R
Sbjct: 434 VSGMREWPVRGLPSACGDQTDVAEACIRSYKDDGQGVMGFFVAAFVR 480


>gi|325479479|gb|EGC82575.1| transcription antitermination factor NusB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 127

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 8   RLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R     L+   ++     +  +++          LS  D+  V+  +N     +  I+  
Sbjct: 7   REWVFKLIYQDMISHTDDIDKIIEE-------NGLS--DEEFVKESINSYFSNISSIEEK 57

Query: 67  LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           L   L S   R    L+ +L +S+ +I YL V     ++ AV  AK+  +   + 
Sbjct: 58  LKENLDSRSKRLAKVLRAILYLSLNEIYYLGVPVSVSINEAVNLAKKYSDKDDYK 112


>gi|296117827|ref|ZP_06836410.1| n utilization substance protein B-like protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969058|gb|EFG82300.1| n utilization substance protein B-like protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 220

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLPRIDAVLDFVL--I 72
                + +    +++     +              + +V      L  ID+ ++  L   
Sbjct: 2   YEAENRDMDPVAIVEDRIKLAREDEHGVAPIAEYTKVLVTGVAEELDTIDSTIERYLAED 61

Query: 73  SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             L R     + ++RV+V ++LY   ++     V   VE A  +      A  +N++L  
Sbjct: 62  WELYRIPAVDRAIMRVAVWELLYNSEEIDLATAVSEGVELA-SEYSTDAAAPYINAVLDD 120

Query: 131 VSREKIELLQRI 142
           V+  + E     
Sbjct: 121 VAHSRSEDNPMN 132


>gi|161507739|ref|YP_001577700.1| transcription termination [Lactobacillus helveticus DPC 4571]
 gi|160348728|gb|ABX27402.1| transcription termination [Lactobacillus helveticus DPC 4571]
          Length = 130

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  +S   +          + LS       + ++   L     +
Sbjct: 4   HESRKVAMQAVYLANQEPDLSAEDVEAKVVATLNLKQLS----AYSKKLIEGVLENREDL 59

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R    +  ++ V++ +I   D +   A V+ A+       E +  
Sbjct: 60  QSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCDEFAEPKE- 118

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 119 KPFINGMLANF 129


>gi|148238346|ref|YP_001223733.1| transcription antitermination protein NusB [Synechococcus sp. WH
           7803]
 gi|147846885|emb|CAK22436.1| Transcription termination factor, NusB [Synechococcus sp. WH 7803]
          Length = 210

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 5   MNARLVSSHLLSCVMR--KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           M  R      L+   +    +S +  L      +   ++ +     ++      L   P 
Sbjct: 77  MPVREHLRDSLTSAEQVLNGLSASLELPRLLALADQEMVQKEAMRRIQL----VLDARPS 132

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           +D  LD V+    L R     + +LR++V  +  +        + AVE A R  + +   
Sbjct: 133 LDDQLDSVMEGWRLSRLPRIDRDILRLAVVDLQSMKTPASVACNEAVELANRYSDEQGR- 191

Query: 122 KLVNSILRRVSR 133
           +++N +LRR+  
Sbjct: 192 RMINGVLRRLQN 203


>gi|189184153|ref|YP_001937938.1| transcription antitermination protein NusB [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180924|dbj|BAG40704.1| N utilization substance protein B [Orientia tsutsugamushi str.
           Ikeda]
          Length = 162

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 17/128 (13%)

Query: 7   ARLVSSHLLS--CVMRKRISLTCLLD---LEYGDSAFRLLSQRDQI---------LVRAI 52
            R+ S   +    ++    ++  ++D     Y D +     + D            +  +
Sbjct: 14  TRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTNYLTKL 73

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
           VN T+  L  ID ++   L     +      L  +LRV+  ++  +       V++    
Sbjct: 74  VNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVINEFTN 133

Query: 110 QAKRDKEN 117
            A    ++
Sbjct: 134 IASDFVKD 141


>gi|113474580|ref|YP_720641.1| transcription antitermination protein NusB [Trichodesmium
           erythraeum IMS101]
 gi|119390846|sp|Q118A6|NUSB_TRIEI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|110165628|gb|ABG50168.1| NusB antitermination factor [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--DQILVRAIVNVTLRFLPRIDAV 66
             +  +L   +    +    +           L+ +   +     ++         +D +
Sbjct: 76  ESARVMLYEAIELGQTAINRIGTAVELPEMLQLTNQLEVRSYAMEVLTKVNGNRKEVDKL 135

Query: 67  L-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
           L + ++   + R       +LR++VA+++++ +     +  AVE AKR      +   +N
Sbjct: 136 LQESIVDWQIERLPRIDLDILRIAVAEMMFIGIQKQVAISEAVELAKRYSGEDGYK-FIN 194

Query: 126 SILRR 130
            +LRR
Sbjct: 195 GVLRR 199


>gi|282891352|ref|ZP_06299854.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498849|gb|EFB41166.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 187

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI--VNVTLRFLPRIDA 65
           R V   LL      R+S     + E  +   + L+   +    A+  V + L     ID 
Sbjct: 9   REVVFVLLYSQDCGRVS-----EQELVELVMKELAVTKKTAYSALEKVELVLEKKAEIDD 63

Query: 66  VLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           ++          R +   + +LR+ + ++L+ D +     +  A+  +++       
Sbjct: 64  LIANTSREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSRKFSTPESA 120


>gi|77410012|ref|ZP_00786580.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae COH1]
 gi|77171379|gb|EAO74680.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae COH1]
          Length = 199

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424
            C+   +++EEVV  +L+     +ELV +     K   M   ++     R+ P   +   
Sbjct: 1   TCTWSPEENEEVVNWLLQEY-DYLELVDI----PKLNGMVEGINVPQVARMYPHHFQGEG 55

Query: 425 GVSSGMDGFFAVALR 439
                    F   LR
Sbjct: 56  Q--------FVAKLR 62


>gi|116071798|ref|ZP_01469066.1| transcription antitermination protein NusB [Synechococcus sp.
           BL107]
 gi|116065421|gb|EAU71179.1| transcription antitermination protein NusB [Synechococcus sp.
           BL107]
          Length = 202

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           +      +   +R    IDA LD V+    L R     + +LR+ V  +  +        
Sbjct: 108 RSAAMERIAQVIRQRESIDARLDQVMEGWRLARLPRIDRDILRLVVVDLQTMGTPAPVAF 167

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           + AVE A R  + +   +++N +LRR   
Sbjct: 168 NEAVELANRYSDEQGR-RMINGVLRRFHD 195


>gi|326803320|ref|YP_004321138.1| transcription antitermination factor NusB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650660|gb|AEA00843.1| transcription antitermination factor NusB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 194

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQ-----ILVRAIVNVTLRFLPRIDAVLD 68
           L  +  + + L         +  F       D+        + +++        +D  ++
Sbjct: 55  LDQLKSQGLPLEKSQGQMKSNKRFNQAPVSEDEELSLPPYYQELLDRIASHQESVDQAIE 114

Query: 69  FVL--ISSLPRKKYSLQQLLRVSVAQILYLD---VADYAVVDLAVEQAKRDKENRH 119
             +    SL R +     +LRV   +ILY D   V     VD A+  A+R  +   
Sbjct: 115 DHIQGKWSLNRLEAMNLAILRVGAYEILYGDHDRVPGVVAVDEAIHLARRYSDEAS 170


>gi|160880647|ref|YP_001559615.1| NusB antitermination factor [Clostridium phytofermentans ISDg]
 gi|189035885|sp|A9KMC2|NUSB_CLOPH RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|160429313|gb|ABX42876.1| NusB antitermination factor [Clostridium phytofermentans ISDg]
          Length = 132

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
             L  ID +L        L R       ++R++  +I + D V     ++ A+E AK+  
Sbjct: 56  EKLGEIDTILANASSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAKKYG 115

Query: 116 ENRHFA 121
            +   +
Sbjct: 116 GDSSAS 121


>gi|58337606|ref|YP_194191.1| transcriptional termination factor [Lactobacillus acidophilus NCFM]
 gi|227904246|ref|ZP_04022051.1| transcriptional termination factor [Lactobacillus acidophilus ATCC
           4796]
 gi|58254923|gb|AAV43160.1| transcriptional termination factor [Lactobacillus acidophilus NCFM]
 gi|227867894|gb|EEJ75315.1| transcriptional termination factor [Lactobacillus acidophilus ATCC
           4796]
          Length = 130

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  ++   +            LS       + ++   L     +
Sbjct: 4   HESRKVAMQAVYLANQEPDLNAEEVEAKVVATLNLNQLS----AYSKKLIEGVLENREDL 59

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R   ++  ++ +++ +I   D +   A V+ A+       E +  
Sbjct: 60  QSELTSHLKKGWRLERVSQTIVAIMEIALFEIKNSDEIEPKAAVNEALNLCDEFAEPKE- 118

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 119 KPFINGMLANF 129


>gi|148284859|ref|YP_001248949.1| transcription antitermination protein NusB [Orientia tsutsugamushi
           str. Boryong]
 gi|146740298|emb|CAM80679.1| N utilization substance protein B [Orientia tsutsugamushi str.
           Boryong]
          Length = 162

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 17/128 (13%)

Query: 7   ARLVSSHLLS--CVMRKRISLTCLLD---LEYGDSAFRLLSQRDQI---------LVRAI 52
            R+ S   +    ++    ++  ++D     Y D +     + D            +  +
Sbjct: 14  TRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLRTNYLTKL 73

Query: 53  VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109
           VN T+  L  ID ++   L     +      L  +LRV+  ++  +       V++    
Sbjct: 74  VNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKVVINEFTN 133

Query: 110 QAKRDKEN 117
            A    + 
Sbjct: 134 IASDFVKE 141


>gi|291562672|emb|CBL41488.1| transcription antitermination factor NusB [butyrate-producing
           bacterium SS3/4]
          Length = 139

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 43  QRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVAD 100
           + D+  +   V   +  +P ID  ++ +       R       +LR++V ++ Y  ++ +
Sbjct: 45  EEDRAYLEKRVEKIMELIPEIDEKINEIAEGWRTRRMGKVELTILRLAVFEMKYDEEIPE 104

Query: 101 YAVVDLAVEQAKRDKENRHFA 121
              ++ AVE AK+   +   A
Sbjct: 105 KVAINEAVELAKKFGGDEAPA 125


>gi|83273768|ref|XP_729543.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487643|gb|EAA21108.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 537

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL---------HLYAEDII 294
             +++           +     +   + +K R E+L+  L +          +L+  +  
Sbjct: 235 KYIEINCCMNVLNYYKVNRKGCLVINEYNKGRYERLKQVLYKHLPNDLIKSGNLHITNYN 294

Query: 295 EMDAFDYCPKKLFDAVLVDAPCS-STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            +    +   + F  +L+D PCS     I++  + +     + I  ++  Q  LL+    
Sbjct: 295 GLQLNSFIRFQKFHKILLDVPCSTDEHLIKKGTNDINKWTFNSIKNNSNIQYDLLVNSFH 354

Query: 354 FVKPGGIVVFSNCSLDKQDSE 374
            +   G++++S C+L   +++
Sbjct: 355 LLHKNGVIIYSTCALSHYEND 375


>gi|229825477|ref|ZP_04451546.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC
           49176]
 gi|229790040|gb|EEP26154.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC
           49176]
          Length = 138

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 2/106 (1%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLP 76
           +             ++   A     + D+  +   V         +D+++D       + 
Sbjct: 14  IFIFDFYPEAEWKEQFESYADYSEIKEDREGLWQRVMALEEKKAEVDSLIDGASKKWRIS 73

Query: 77  RKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           R   +   LLRV+V +I +  ++ D   V+ AVE AK    +   A
Sbjct: 74  RLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAKIYGGDESPA 119


>gi|293380300|ref|ZP_06626374.1| transcription antitermination factor NusB [Lactobacillus crispatus
           214-1]
 gi|290923115|gb|EFE00044.1| transcription antitermination factor NusB [Lactobacillus crispatus
           214-1]
          Length = 131

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 47/131 (35%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  ++   +          + LS       + ++   L     +
Sbjct: 4   HESRKVAMQAVYLANQEPDLTAEEVEAKVVATLNLKQLS----AYSKKLIEGVLEDRKNL 59

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R   ++  ++ V++ +I + D +   A V+ A+    +  E +  
Sbjct: 60  QSELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDKFAEPKE- 118

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 119 KPFINGMLANF 129


>gi|260101433|ref|ZP_05751670.1| transcriptional termination factor [Lactobacillus helveticus DSM
           20075]
 gi|260084773|gb|EEW68893.1| transcriptional termination factor [Lactobacillus helveticus DSM
           20075]
          Length = 135

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  +S   +          + LS       + ++   L     +
Sbjct: 9   HESRKVAMQAVYLANQEPDLSAEDVETKVVATLNLKQLS----AYSKKLIEGVLENREDL 64

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R    +  ++ V++ +I   D +   A V+ A+       E +  
Sbjct: 65  QSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDEFAEPKE- 123

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 124 KPFINGMLANF 134


>gi|308177500|ref|YP_003916906.1| transcription antitermination factor NusB [Arthrobacter
           arilaitensis Re117]
 gi|307744963|emb|CBT75935.1| transcription antitermination factor NusB [Arthrobacter
           arilaitensis Re117]
          Length = 136

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 52  IVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110
           I+   +  L RID VL+  +   ++ R     +  LR+ V ++LY D    AV       
Sbjct: 47  IIEGVMAHLDRIDEVLESYVKDWTIERMPAVDRSALRIGVWELLYNDDVPDAVAVAEAVV 106

Query: 111 AKRDKENRHFAKLVNSILRRVS 132
             R+       + VN +L R+ 
Sbjct: 107 NVRELSTDESPEFVNGVLGRIQ 128


>gi|227893296|ref|ZP_04011101.1| transcription termination [Lactobacillus ultunensis DSM 16047]
 gi|227864876|gb|EEJ72297.1| transcription termination [Lactobacillus ultunensis DSM 16047]
          Length = 130

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  ++   +          + LS       + ++   L+    +
Sbjct: 4   HESRKVAMQAVYLANQEPDLNAEEVEAKVVATLNLKQLS----AYSKKLIEGVLKNREDL 59

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R    +  ++ V++ +I   D +   A V+ A+       E +  
Sbjct: 60  QSELTNHLKKGWRLERVSQIVVAIMEVALFEIKESDEIDPKAAVNEALNLCDEFAEPKE- 118

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 119 KPFINGMLANF 129


>gi|209525659|ref|ZP_03274196.1| NusB antitermination factor [Arthrospira maxima CS-328]
 gi|209493828|gb|EDZ94146.1| NusB antitermination factor [Arthrospira maxima CS-328]
          Length = 209

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 59  FLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
               +D+ L+  +    L R     + +LR++V ++LYL V +   V+ AVE AKR   +
Sbjct: 126 HREAVDSSLEEAMVDWQLSRLPRIDRDILRIAVTELLYLGVQEQIAVNEAVELAKRY-SD 184

Query: 118 RHFAKLVNSILRRVSRE 134
           +   + +N +LRRV   
Sbjct: 185 QDSYRFINGVLRRVVDH 201


>gi|19704937|ref|NP_602432.1| transcription antitermination protein NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296329192|ref|ZP_06871693.1| transcription antitermination factor NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|22095941|sp|Q8RII1|NUSB_FUSNN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|19712836|gb|AAL93731.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296153548|gb|EFG94365.1| transcription antitermination factor NusB [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 153

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTC---LLDLEYGDSAFR--LLSQRDQILVRAIVNVTLRFLP 61
           AR     L+  V     +        D+   +S      L++     +++ ++   +   
Sbjct: 19  AREEVFKLVFGVEATESASEELKQAFDIYLQNSEELIGTLNENQLEFLKSSIDGIAKNYD 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  ++     +    R     + LL V+  + ++ +     + +  +E AK    N   
Sbjct: 79  NIKDIIKKNTQNWAYERIGVVERALLIVATYEFIFKNAPIEVIANEIIELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + VN IL  
Sbjct: 138 YEFVNGILAN 147


>gi|68073027|ref|XP_678428.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498891|emb|CAH97975.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 489

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL---------HLYAEDII 294
             +++           +     +   + +K R E+L+  L +          +L+  +  
Sbjct: 237 KYIEINCCMNVLNYYKVNMKGCLVVNEYNKGRYERLKQVLYKHLPNDLIKSGNLHITNYN 296

Query: 295 EMDAFDYCPKKLFDAVLVDAPCS-STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            +    +   + F  +L+D PCS     I++  + +     + I  ++  Q  LL+    
Sbjct: 297 GLQLNSFIRFQKFHKILLDVPCSTDEHLIKKGTNDINKWTFNSIKNNSNIQYDLLVNSFY 356

Query: 354 FVKPGGIVVFSNCSLDKQDSE 374
            +   G++++S C+L   +++
Sbjct: 357 LLHKNGVIIYSTCALSHYEND 377


>gi|187734931|ref|YP_001877043.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835]
 gi|187424983|gb|ACD04262.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835]
          Length = 294

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 49  VRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDL 106
            + +    LR    +DA +D  L + S  R     + +LR+   ++L+  D+    V+  
Sbjct: 204 AKTLGEDILRRRDGLDAAIDSTLENYSPERVSAIDRAILRLGAYELLHRKDLPAPIVISE 263

Query: 107 AVEQAKRDKENRH 119
           A+  ++R      
Sbjct: 264 AIRLSERFSSAES 276


>gi|227549190|ref|ZP_03979239.1| transcription antitermination protein NusB [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078750|gb|EEI16713.1| transcription antitermination protein NusB [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 188

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
             +L     + I  +  + D        +          R I+      L  ID  ++  
Sbjct: 18  VDILFEAETRDIDPVAVVEDRIELAQDPQNAVAPIAEYTREIITGVAEKLDDIDDAVEQF 77

Query: 71  L--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           L     L R     +Q+LRV+  +IL+  DVA    +  A+  A+    +    
Sbjct: 78  LSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIAISNALGMAEEYAGHAAPP 131


>gi|85373345|ref|YP_457407.1| transcription termination factor [Erythrobacter litoralis HTCC2594]
 gi|84786428|gb|ABC62610.1| transcription termination factor [Erythrobacter litoralis HTCC2594]
          Length = 125

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 20  RKRISLTCLLDLEYGDSAFRLLSQ------RDQILVRAIVNVTLRFLPRIDAVLDFVLI- 72
            ++  L  LLD  +     R +         +      IV+        ID ++   L  
Sbjct: 1   MEKTPLARLLDEFHQHRLGREIEDGEHYADAEVDFFDDIVSGVDARSDEIDELVTAKLAA 60

Query: 73  -SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +L R   ++ Q+LR    +++   DV   A +   V+ AK   ++R   
Sbjct: 61  GWTLARLDKTMVQILRAGTYELIARADVPKAAAISEYVDVAKAFFDDREAK 111


>gi|207110956|ref|ZP_03245118.1| transcription antitermination protein NusB [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 74

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDV 98
              ++ N  L  +  IDA+++  L      R     + +LR+   +I +   
Sbjct: 21 AFALSLFNGVLERINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPT 73


>gi|227873694|ref|ZP_03991927.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227840462|gb|EEJ50859.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 185

 Score = 53.4 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVV 104
             +   V   L  LP +D  ++ V    +  R   +   +LR+++ ++ Y  +  D  V 
Sbjct: 58  AFLSQEVMKILERLPHLDERINAVTEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVF 117

Query: 105 DLAVEQAKRDKENRHFA 121
           + AVE AK+       +
Sbjct: 118 NEAVEIAKKYGGADSGS 134


>gi|323466274|gb|ADX69961.1| Transcriptional termination factor [Lactobacillus helveticus H10]
          Length = 150

 Score = 53.4 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  +S   +          + LS       + ++   L     +
Sbjct: 24  HESRKVAMQAVYLANQEPDLSAEDVEAKVVATLNLKQLS----AYSKKLIEGVLENREDL 79

Query: 64  DAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R    +  ++ V++ +I   D +   A V+ A+       E +  
Sbjct: 80  QSELTNHLKKGWHLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDEFAEPKE- 138

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 139 KPFINGMLANF 149


>gi|160945199|ref|ZP_02092425.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442930|gb|EDP19935.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105571|emb|CBL03115.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii SL3/3]
          Length = 148

 Score = 53.4 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR  +  L        I L   L     +     +        R ++N        
Sbjct: 6   PRREARENAFLLAFSQTFGDIPLAEALSNHAENDEEHPVD----AFSRLLLNAYYDHSAE 61

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L + ++ R       +LR++VA++L+  +      ++ AVE  K+      +
Sbjct: 62  VDDEIRSHLRNWTMERLPRVSLTVLRLAVAEMLFGGENKPGVAINEAVELTKKYGAGEDY 121


>gi|221505038|gb|EEE30692.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 825

 Score = 53.4 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           G   ++P G++V+S CS  +  +E++V+  L        L PL 
Sbjct: 651 GFELLRPNGLLVYSTCSRCEDQNEQIVRDFL-RCNDTAVLYPLP 693


>gi|221481961|gb|EEE20327.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 825

 Score = 53.4 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           G   ++P G++V+S CS  +  +E++V+  L        L PL 
Sbjct: 651 GFELLRPNGLLVYSTCSRCEDQNEQIVRDFL-RCNDTAVLYPLP 693


>gi|237837027|ref|XP_002367811.1| hypothetical protein TGME49_006300 [Toxoplasma gondii ME49]
 gi|211965475|gb|EEB00671.1| hypothetical protein TGME49_006300 [Toxoplasma gondii ME49]
          Length = 825

 Score = 53.4 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394
           G   ++P G++V+S CS  +  +E++V+  L        L PL 
Sbjct: 651 GFELLRPNGLLVYSTCSRCEDQNEQIVRDFL-RCNDTAVLYPLP 693


>gi|260495022|ref|ZP_05815151.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_33]
 gi|260197465|gb|EEW94983.1| transcription antitermination factor NusB [Fusobacterium sp.
           3_1_33]
          Length = 157

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
           AR     L+        S   L     +   +       LS++    ++  +N  +    
Sbjct: 19  AREEVFKLVFGAELTESSSDELKQGFSVYLQNDEEFINALSEKQLEFIKNSINRIVENYD 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I  V+     +    R     + LL V   + L  +     + +  VE AK    N   
Sbjct: 79  NIKDVIKKNTQNWTYERIGVIERSLLIVGTYEFLIKNTPIEVIANEIVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + +N IL  
Sbjct: 138 YEFINGILAN 147


>gi|317132483|ref|YP_004091797.1| methyltransferase small [Ethanoligenens harbinense YUAN-3]
 gi|315470462|gb|ADU27066.1| methyltransferase small [Ethanoligenens harbinense YUAN-3]
          Length = 398

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 19/135 (14%)

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
             ++ +VLD     GG        GA    A+D+S   LE +R N     L      E +
Sbjct: 222 PFSSGAVLDCFCHTGGFALHAARYGADTVEAVDISSAALEMVRRNAALNGLANITTTEAN 281

Query: 298 AF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
            F          + +D V++D P              + +    +  +A   +++ L+G+
Sbjct: 282 VFDLLKAYQQEGRQYDLVILDPPA-------------FAKSKSALQSAARGYKEINLRGM 328

Query: 353 SFVKPGGIVVFSNCS 367
             V+PGG +V  +CS
Sbjct: 329 QLVRPGGFLVTCSCS 343


>gi|269218525|ref|ZP_06162379.1| B-like utilization substance protein [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211636|gb|EEZ77976.1| B-like utilization substance protein [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 171

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 2/120 (1%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
            +    R  +  ++     + +     LL L              +    +IV       
Sbjct: 15  TARTKQRNRALDVVFEADERGLLGQGDLLALLGERRVVSTSQSPIRDFGASIVEAYAENA 74

Query: 61  PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             ID +++      ++ R     + +LR + A+++Y+    + V+      A+     R 
Sbjct: 75  DDIDTIVEAASEDWAMSRMNAVDRSILRAAAAELVYVGTDRFHVIPEWASLAREYSTERS 134


>gi|227485064|ref|ZP_03915380.1| possible transcription antitermination protein NusB [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236897|gb|EEI86912.1| possible transcription antitermination protein NusB [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 128

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MK   + R     L+      +      ++      +   L++ D+  +   +N   +  
Sbjct: 1   MK-RTDQREWVFKLIFQDTINK------IEDTKDLLSNHKLNE-DETFIVESINSYKKNF 52

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +ID +L       +P+    ++ ++ +S+ +I +LD+     ++ AV  AK+      +
Sbjct: 53  EKIDKILQDNAPKGMPKLSRVVKSIIYLSINEIYFLDIPVSVSINEAVNIAKKFSNEDDY 112

Query: 121 A 121
            
Sbjct: 113 K 113


>gi|227505027|ref|ZP_03935076.1| transcription antitermination protein NusB [Corynebacterium
           striatum ATCC 6940]
 gi|227198391|gb|EEI78439.1| transcription antitermination protein NusB [Corynebacterium
           striatum ATCC 6940]
          Length = 175

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 5/141 (3%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLPRIDAVLDFVL 71
            ++     + +    +++     +              + IV      L  ID  ++  L
Sbjct: 24  DIMYEAENRDVDPVAIIEDRVSLARDHDNGVAPVAEYTQIIVKGAAEELDVIDETIERYL 83

Query: 72  --ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
                L R     + ++RV+V +IL+  DV +   +   VE A  +  N      ++++L
Sbjct: 84  SADWELHRIPAVDRAIMRVAVWEILFNEDVPNATALVEGVELA-SEYSNDQAPPYIHAVL 142

Query: 129 RRVSREKIELLQRIAGISIIP 149
             V + +             P
Sbjct: 143 DDVIQAQSADNPMSVAAEEAP 163


>gi|300781095|ref|ZP_07090949.1| possible transcription antitermination protein NusB
           [Corynebacterium genitalium ATCC 33030]
 gi|300532802|gb|EFK53863.1| possible transcription antitermination protein NusB
           [Corynebacterium genitalium ATCC 33030]
          Length = 217

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 5/137 (3%)

Query: 12  SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
             +L     + +  +  + D                   R I+      L  ID  ++  
Sbjct: 18  VDILFEAETRDVDPVAIVEDRAALAGDPTNAVAPVADYTREIIAGAAAALDEIDNAIERF 77

Query: 71  LI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           L     L R     + +LRV+  +ILY D V     +  A+E +     + + +  ++++
Sbjct: 78  LSDNWELNRIPAVDRAILRVATWEILYNDEVEPPISIANAMEMSTEYAGD-NASPYIHAV 136

Query: 128 LRRVSREKIELLQRIAG 144
           L  + +        IA 
Sbjct: 137 LDDIIQAHASNAPEIAQ 153


>gi|260891342|ref|ZP_05902605.1| transcription antitermination factor NusB [Leptotrichia hofstadii
           F0254]
 gi|260858725|gb|EEX73225.1| transcription antitermination factor NusB [Leptotrichia hofstadii
           F0254]
          Length = 138

 Score = 53.0 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFL 60
           +    R     LL         +   ++    +   +   + D  +  +  I    +   
Sbjct: 2   TRREIREEIFKLLFEYELIDNDIEKRINETIAEENLKRDEEIDFLRSYITEI----IENK 57

Query: 61  PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             +   +  VL   +  R     + LL++S  +I   D+     ++  +E AK+   N 
Sbjct: 58  DILTDRIRQVLDGWTYERLGTIEKVLLKISFYEITIKDIGYEIAINEVLEIAKKYSYND 116


>gi|256843408|ref|ZP_05548896.1| transcription antitermination factor NusB [Lactobacillus crispatus
           125-2-CHN]
 gi|256614828|gb|EEU20029.1| transcription antitermination factor NusB [Lactobacillus crispatus
           125-2-CHN]
          Length = 131

 Score = 53.0 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  ++   +          + LS       + ++   L     +
Sbjct: 4   HESRKVAMQAVYLANQEPDLTAEEVEAKVVATLNLKQLS----AYSKKLIEGVLEDRKNL 59

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R   ++  ++ V++ +I + D +   A V+ A+       E +  
Sbjct: 60  QSELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDEFAEPKE- 118

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 119 KPFINGMLANF 129


>gi|113954607|ref|YP_729249.1| transcription antitermination protein NusB [Synechococcus sp.
           CC9311]
 gi|113881958|gb|ABI46916.1| putative transcription antitermination factor NusB [Synechococcus
           sp. CC9311]
          Length = 210

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SS 74
             V+   +S +  L      S    +    +  ++ +    L+    ID +LD V+    
Sbjct: 91  EQVL-NGLSASLELPRLLALSNQDQVR---REAMQRVTF-VLKKRKAIDQMLDGVMEGWR 145

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           L R     + +LR++V  +  L        + AVE A R  + +    ++N +LRR+  
Sbjct: 146 LTRLPRIDRDILRLAVIDLSELKTPAAVACNEAVELAHRFSDEQGRK-MINGVLRRLQN 203


>gi|227875419|ref|ZP_03993560.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35243]
 gi|227843973|gb|EEJ54141.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35243]
          Length = 182

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
             R I+      L RIDA L       SL R       ++RV+  +IL+  DV     + 
Sbjct: 38  YAREILEGVAEHLDRIDAALATYSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAIT 97

Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSRE 134
            A++ A  ++      K +N +L  ++  
Sbjct: 98  AAMQLA-AERSTDESPKFINGLLGTINDM 125


>gi|47229504|emb|CAF99492.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 627

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 34/111 (30%)

Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI------- 413
           CSL+  + E V+  +L  S   +EL   ++          +     ++ EG         
Sbjct: 183 CSLNPIEDEAVIASLLEKSEGALELADCSADLPGLKWMPGVTSWKLMTKEGQWYSDWSEV 242

Query: 414 ------RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI 442
                 +I P M                  +I        GFF   L +  
Sbjct: 243 PSSRHTQIRPTMFPPKDPEKLIGMHLERCMRILPHHQNTGGFFVAVLVKKA 293


>gi|156093395|ref|XP_001612737.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801611|gb|EDL43010.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 556

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           + A FQ+K+L   ++ +K     V+S CS   +++EEVV+ VL+S+P    L       +
Sbjct: 447 RLAEFQKKILNHALATLKTADTFVYSTCSFFGEENEEVVESVLQSNPG-FCLEKAGKEKF 505

Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
                   +     +R  P +            G F   LRR
Sbjct: 506 LFNGGGGCVVSSQCVRTFPALHACR--------GIFVSKLRR 539


>gi|293363740|ref|ZP_06610483.1| transcription antitermination factor NusB [Mycoplasma alligatoris
           A21JP2]
 gi|292552705|gb|EFF41472.1| transcription antitermination factor NusB [Mycoplasma alligatoris
           A21JP2]
          Length = 150

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K+   +R     ++            ++++      F  L       +        +   
Sbjct: 5   KTRRKSREEKIQVIYRFEL----FDEVINISQSFVEFDFLDPSQLKFL----EGIEKNYV 56

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK---- 115
            I  +++  L    +  R    ++ +L  + A++    +    V++ AVE  K       
Sbjct: 57  FIKKIINSFLNTDWTWHRIPPFIRAVLINATAELF--AIPPKIVINEAVEITKDFFCMTE 114

Query: 116 ENRHFAKLVNSILRRVSR 133
           +++ F K VN+IL+ V +
Sbjct: 115 KDQKFYKFVNAILQNVYK 132


>gi|218282376|ref|ZP_03488658.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
 gi|218216662|gb|EEC90200.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
          Length = 125

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +    R+V+   +   +     +      +      +  +  D   + ++   T+     
Sbjct: 2   NRHEQRVVAMQSVYQHLLLGKDI-----RKCVFDVMKGSNDID-GYLYSLTMGTIENKEA 55

Query: 63  IDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            +  ++ +L       R     Q +L +S  +IL  D     V++ A+  AK+  ++  +
Sbjct: 56  FEQKINELLRDDWDFDRLSMLEQAILLISFQEILANDTPKAVVINEAITLAKKYCDDNSY 115

Query: 121 A 121
            
Sbjct: 116 K 116


>gi|298712111|emb|CBJ32992.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 290

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGF 433
           V++ +L+     V+LVP    + +        S     R  P  ++  +       MDGF
Sbjct: 5   VIEYILQKR--YVKLVPTGLDFGRP-----GFSRFQERRFHPSMNLTRRFYPHVHNMDGF 57

Query: 434 FAVALRR 440
           F   L++
Sbjct: 58  FVAKLKK 64


>gi|257439489|ref|ZP_05615244.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii A2-165]
 gi|257198061|gb|EEU96345.1| transcription antitermination factor NusB [Faecalibacterium
           prausnitzii A2-165]
          Length = 147

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR  +  L        + L   LD        R +        + +++        
Sbjct: 6   PRREARENAFLLAFSQTFGDVPLQEALDTNNECGEERPVDV----FGQRLLSAYYSHSAE 61

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
           +D ++   L + ++ R       +LR+++A++LY D      V++ AVE  K+   +  +
Sbjct: 62  VDDLIRDHLRNWTMERLPRVSLTVLRLALAEMLYGDERKPGVVINEAVELTKKYGADEDY 121


>gi|39938929|ref|NP_950695.1| transcription termination factor [Onion yellows phytoplasma OY-M]
 gi|39722038|dbj|BAD04528.1| transcription termination factor [Onion yellows phytoplasma OY-M]
          Length = 149

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 57/150 (38%), Gaps = 16/150 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R+    LL      + +LT  L     +  F           + I+      L  ID ++
Sbjct: 14  RIEVMKLLYQYDFYQNNLT--LSQTNPNPIFT--------FFQKIIT----NLKFIDEII 59

Query: 68  -DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR-DKENRHFAKLVN 125
              +    + R     + ++R++  ++L  +++   ++D A+E  K+    N       N
Sbjct: 60  TKSLYDYKINRLNKVDRAIIRLATYELLETNISHAIIIDEAIELTKQFCNLNDEKQHKFN 119

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKER 155
           + L     +++++ ++   +  +  +   +
Sbjct: 120 NKLLDQIYQQLQMYKKTYYLIELKNYPNNK 149


>gi|306818731|ref|ZP_07452453.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35239]
 gi|304648417|gb|EFM45720.1| possible transcription antitermination protein NusB [Mobiluncus
           mulieris ATCC 35239]
          Length = 182

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVV 104
              R I+      L RIDA L       SL R       ++RV+  +IL+  DV     +
Sbjct: 37  SYAREILEGIAEHLERIDAALATYSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAI 96

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
             A++ A  ++      K +N +L  ++  
Sbjct: 97  TAAMQLA-AERSTDESPKFINGLLGTINDM 125


>gi|88607519|ref|YP_505131.1| N utilization substance protein B [Anaplasma phagocytophilum HZ]
 gi|88598582|gb|ABD44052.1| N utilization substance protein B [Anaplasma phagocytophilum HZ]
          Length = 282

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 7   ARLVSSHLLSCVMRKRIS---LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           AR ++      +M    +   L  LL+          L + D+ L+  I+   +     +
Sbjct: 22  ARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLHRVDKKLLSKILGCMIEKCNEV 81

Query: 64  DAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           D+++   L    S+ R       ++R  V ++L L  ++  +++  V  A      +   
Sbjct: 82  DSLISVHLNEKWSMERINLVSLAVMRAGVCELLCLKTSECVIINEYVGIA-STVLEKSEV 140

Query: 122 KLVNSILRRVSREKIELL 139
             VN+IL +    +    
Sbjct: 141 NFVNAILNKAKTVRSPEC 158


>gi|330836447|ref|YP_004411088.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374]
 gi|329748350|gb|AEC01706.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374]
          Length = 138

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105
             R +V  TL  +  ID V+       +  R     + +LR+SV  + +  D   + ++D
Sbjct: 23  FARYLVAGTLENIDGIDDVIAAYSVRRAFDRIDVIDRNILRISVFSLFFSEDTHPHVIID 82

Query: 106 LAVEQ 110
            AV+ 
Sbjct: 83  EAVKL 87


>gi|318042975|ref|ZP_07974931.1| transcription antitermination protein NusB [Synechococcus sp.
           CB0101]
          Length = 205

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 29  LDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQL 85
           L          +LS +D  +          LR    +D  LD V+    L R     + +
Sbjct: 97  LSASLELPRLLMLSDQDEIRRGAVDRARAVLRSREDLDQRLDAVMEGWRLTRLPRIDRDI 156

Query: 86  LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
           LR++   I   +       + AVE A R  + +   +++N +LRR 
Sbjct: 157 LRLAAVDIEQFNTPAAVACNEAVELANRYSDEQGR-RMINGVLRRF 201


>gi|213026395|ref|ZP_03340842.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 202

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 10/168 (5%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 35  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 94

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 95  RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 154

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+
Sbjct: 155 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRE 202


>gi|227878894|ref|ZP_03996799.1| transcriptional termination factor [Lactobacillus crispatus JV-V01]
 gi|256849770|ref|ZP_05555201.1| transcriptional termination factor [Lactobacillus crispatus
           MV-1A-US]
 gi|262046531|ref|ZP_06019492.1| transcriptional antitermination factor NusB [Lactobacillus
           crispatus MV-3A-US]
 gi|295693204|ref|YP_003601814.1| transcription termination factor [Lactobacillus crispatus ST1]
 gi|227861528|gb|EEJ69142.1| transcriptional termination factor [Lactobacillus crispatus JV-V01]
 gi|256713259|gb|EEU28249.1| transcriptional termination factor [Lactobacillus crispatus
           MV-1A-US]
 gi|260572980|gb|EEX29539.1| transcriptional antitermination factor NusB [Lactobacillus
           crispatus MV-3A-US]
 gi|295031310|emb|CBL50789.1| Transcription termination factor [Lactobacillus crispatus ST1]
          Length = 131

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 5   MNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
             +R V+   +    ++  ++   +          + LS       + ++   L     +
Sbjct: 4   HESRKVAMQAVYLANQEPDLTAEEVEAKVVATLNLKQLS----AYSKKLIEGVLEDRKNL 59

Query: 64  DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
            + L   L     L R   ++  ++ V++ +I + D +   A V+ A+       E +  
Sbjct: 60  QSELTSHLKKGWRLERVSQTVVAIMEVALFEINHSDEIDAKAAVNEALNLCDEFAEPKE- 118

Query: 121 AKLVNSILRRV 131
              +N +L   
Sbjct: 119 KPFINGMLANF 129


>gi|156602980|ref|XP_001618754.1| hypothetical protein NEMVEDRAFT_v1g153500 [Nematostella vectensis]
 gi|156200188|gb|EDO26654.1| predicted protein [Nematostella vectensis]
          Length = 74

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 341 ACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398
           A FQ  +L    SF  VK    V +S CS+  Q++E+VV K L+ S    EL     ++ 
Sbjct: 6   ADFQLSVLTHAFSFPAVKK---VAYSTCSIHSQENEDVVHKALKVSQGQFELAHALESWP 62


>gi|213858028|ref|ZP_03384999.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 261

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 10/168 (5%)

Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243
           +   L  +     G  ++   E    + S      G++++Q+AS+ +PV        +  
Sbjct: 94  YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153

Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            V+D+ AAPG KT Q    + +   + A + S  R++ L  N+ R  +    +   D   
Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213

Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +       FDA+L+DAPCS  G +R+ PD L     +  +  A  QR+
Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRE 261


>gi|332637334|ref|ZP_08416197.1| transcription antitermination protein NusB [Weissella cibaria KACC
           11862]
          Length = 140

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 3   SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           +    R  +   +  +       +  ++                   +  +VN  +    
Sbjct: 5   NRHQLRQAAFQSVFGLAMNPDAQVEAVVQQVLDGDPEITWEDELPTDLLDMVNGIVDHQD 64

Query: 62  RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
             D  +   L    ++ R   +   L+RV++ ++ Y +      V+ A++ A  D  +  
Sbjct: 65  EFDLTISEYLADGWTIDRLNLADVVLMRVAMYEVKYAETPAKIAVNEALQLA-HDFTDDA 123

Query: 120 FAKLVNSILRR 130
             K +N IL +
Sbjct: 124 SRKFINGILNK 134


>gi|86605070|ref|YP_473833.1| transcription antitermination protein NusB [Synechococcus sp.
           JA-3-3Ab]
 gi|119390839|sp|Q2JQT6|NUSB_SYNJA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86553612|gb|ABC98570.1| transcription antitermination factor NusB [Synechococcus sp.
           JA-3-3Ab]
          Length = 288

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 7/139 (5%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAIVNVTLR-FLPRIDAVLDF 69
            +L  V++        L +         ++Q    +     ++   LR     IDA L  
Sbjct: 146 RILDEVVQLSQKAVNRLGVALSMPELLHIAQAQEVRAYALQLL-TALRTHKEAIDARLQG 204

Query: 70  -VLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            ++   L R     + +LR++V ++  L    D   ++ AVE AK+   +   A  VN +
Sbjct: 205 VLVGWQLKRVGRIERDILRLAVVEMEILRSSPDKVAINEAVELAKKY-GDPEAAAFVNGV 263

Query: 128 LRRVSREKIELLQRIAGIS 146
           LRR+   ++E         
Sbjct: 264 LRRLVDSRMEAPFGRNPSP 282


>gi|332185633|ref|ZP_08387381.1| transcription antitermination factor NusB [Sphingomonas sp. S17]
 gi|332014611|gb|EGI56668.1| transcription antitermination factor NusB [Sphingomonas sp. S17]
          Length = 151

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRD-----QILVRAIVNVTLRFLPRIDAVLDFV 70
                ++  L  LL   +       +   +           IV      L  ID +++  
Sbjct: 23  YQHDMEKTPLAALLHEFHNHRIGATIEDVEYADADIDFFDDIVKGVHARLGEIDLMIEGK 82

Query: 71  LISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           L S   L R    ++ +LR    +++   DV   AV+   V+ A      +  +  VN +
Sbjct: 83  LASGWTLSRLDRPMKAILRAGTYELIARRDVPVGAVISEYVDVAHAFY-EKRESGFVNGL 141

Query: 128 LR 129
           L 
Sbjct: 142 LD 143


>gi|313664987|ref|YP_004046858.1| transcription antitermination factor NusB [Mycoplasma leachii PG50]
 gi|312949412|gb|ADR24008.1| transcription antitermination factor NusB [Mycoplasma leachii PG50]
          Length = 132

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV-LDFVL 71
            LL     K   L   +D  Y D    + +  ++ L+  I  +  + +  I+ + ++  L
Sbjct: 12  KLLIQAFYKYQLLNASIDYIYQDVLDDVQNFNNKKLLFEINLIAEKQVDLINHININISL 71

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                R    ++ +L V   +ILY D      ++  V   K  + +
Sbjct: 72  NWKWDRIPAVIRAILIVGTYEILYTDTPKPVTINEMVNYVKEIEPD 117


>gi|257068637|ref|YP_003154892.1| transcription antitermination factor NusB [Brachybacterium faecium
           DSM 4810]
 gi|256559455|gb|ACU85302.1| transcription antitermination factor NusB [Brachybacterium faecium
           DSM 4810]
          Length = 178

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R+ +  +L     KRI +  +L      +A +    +     R +V +       ID  L
Sbjct: 48  RIRAIDVLFEADAKRIDVLDVLQERLRRTAAQTPLPQ---WSRTLVELYAPHAVDIDEDL 104

Query: 68  DFVL-ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKENRHFAKLV 124
                   L R     + +LR+  A++LY   +     ++    + A+         + V
Sbjct: 105 ATHSRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTKIAE-VLSTDDSPRFV 163

Query: 125 NSILRR 130
           N +L+R
Sbjct: 164 NGLLQR 169


>gi|87123339|ref|ZP_01079190.1| Antitermination protein NusB [Synechococcus sp. RS9917]
 gi|86169059|gb|EAQ70315.1| Antitermination protein NusB [Synechococcus sp. RS9917]
          Length = 219

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
            +  +L       +S    L      +    +    +  V       L     IDA LD 
Sbjct: 97  AAEQVL-----NGLSGCLELPRLLALADQDQVRDDARRRVAL----VLEQRSAIDARLDG 147

Query: 70  VLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           V+    L R     + +LR++V  +  L        + AVE A R  +++   +++N +L
Sbjct: 148 VMEGWRLSRLPRIDRDILRLAVVDLTALHTPAAVACNEAVELAHRYSDDQGR-RMINGVL 206

Query: 129 RRVSR 133
           RR+ +
Sbjct: 207 RRLQQ 211


>gi|316969317|gb|EFV53435.1| hypothetical protein Tsp_09736 [Trichinella spiralis]
          Length = 510

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
              V+  R           ++   + G+  ++  G +V+S CSL    ++ V++ V R  
Sbjct: 393 RERVVLKRKDASSSDWDELEKYDKVNGLKSLRVNGSLVYSTCSLSPVQNDMVIENVFRKL 452

Query: 385 PIP--------VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
            I         V L  +      S+         G + I P ++     +       +  
Sbjct: 453 QIDHLNMEIVVVNLDNMVDNLKNSMAFDFFPCKYGQL-IIPSLVNNFGPL-------YIC 504

Query: 437 ALRRL 441
            L+RL
Sbjct: 505 KLKRL 509


>gi|289677565|ref|ZP_06498455.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
           syringae FF5]
          Length = 174

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 13/167 (7%)

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI----IPEWFKERLENF 159
           +   V  A + K+      L+N++LR   R+   LL  +    +     P W ++ L+  
Sbjct: 1   IGETVGCADKLKKP-WAKGLLNAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAA 59

Query: 160 YG-KERVLAISDACISPLYIDLTVKFDIE-TWAHKLNAVMLPTGGIRLKE------LPES 211
           +  +   +  ++    P+ + +  + +    +   LN   L        +       P  
Sbjct: 60  WPEQWEAICAANNAHPPMILRVNRRHNRRGQYLELLNTAGLQASACTFSQDGIVLAEPCD 119

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
           + SLPGFAEG   VQD +A +   L        VLD C APGGKT  
Sbjct: 120 VRSLPGFAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCH 166


>gi|160915119|ref|ZP_02077332.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
 gi|158432918|gb|EDP11207.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
          Length = 126

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 12/122 (9%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLR 58
           M  S    R ++   L            LL  +  +  +      +    +  I    +R
Sbjct: 1   MTLSRHKLREIAMTSLYQHF--------LLSKDIKECVYENTQSNEIDPFLYTITIDAIR 52

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116
           +       +D  L    +  R  Y  + +L ++  ++ +       V+D AV  AK+  +
Sbjct: 53  YKDTYVGHIDETLRDDWTFERLGYVEKAILLMAACELDFETAPKAIVIDEAVNLAKKYCD 112

Query: 117 NR 118
             
Sbjct: 113 ED 114


>gi|294083737|ref|YP_003550494.1| NusB antitermination factor [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663309|gb|ADE38410.1| NusB antitermination factor [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 160

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 8/114 (7%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFR-----LLSQRDQILVRAIVNVTLRFLPRIDAV 66
             +L        +            A        +   D   + A+     + +  +D  
Sbjct: 24  IQILYQSQITDRASVDFAPDYLTHYAPDVSKSFRVKDLDHEHLNALYTGVEKEMVLLDED 83

Query: 67  LDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117
           +   L    S+ R       LLR    ++ ++  +   AVV      +      
Sbjct: 84  IADSLASGWSIKRLPLIELTLLRCGAYELRFMPHIPARAVVSEYAAISDACGCE 137


>gi|332184492|gb|AEE26746.1| Transcription termination protein NusB [Francisella cf. novicida
           3523]
          Length = 141

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 1   MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56
           MK+      NARL +   L        +   L    Y D+A R  +  D  L   +++  
Sbjct: 1   MKTTARARNNARLYTVQALYQKRVADNTFAELKVQYYADNADRHYTDWD--LFYRLIDAV 58

Query: 57  LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115
                 ID  +     + +    Y    +L+ ++A+++  L+     ++   VE      
Sbjct: 59  KSNQDIIDKYIQENSNNGVASINYVDYAVLQAAIAELIECLENPYQVIIKEYVEICYSMG 118

Query: 116 ENRHFAKLVNSILRR 130
               +   VN++L+ 
Sbjct: 119 TEEGYK-FVNAVLQN 132


>gi|289422315|ref|ZP_06424165.1| transcription antitermination factor NusB [Peptostreptococcus
           anaerobius 653-L]
 gi|289157260|gb|EFD05875.1| transcription antitermination factor NusB [Peptostreptococcus
           anaerobius 653-L]
          Length = 164

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYA 102
           D   +  +V         ID+ ++      ++         +LR+++ +ILY+ D+ D  
Sbjct: 73  DASYLMDMVAAFDANREEIDSNINKFARKWTIDTLPIVDVAILRMAITEILYMIDIPDGI 132

Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRR 130
             D AV  AK+   +    K +N IL  
Sbjct: 133 TCDEAVNLAKKYC-DDGAYKYINGILGS 159


>gi|33864549|ref|NP_896108.1| transcription antitermination protein NusB [Synechococcus sp. WH
           8102]
 gi|33632072|emb|CAE06525.1| NusB family protein [Synechococcus sp. WH 8102]
          Length = 211

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SS 74
             V+   +S +  L           +    +      V+  L    RIDA LD V+    
Sbjct: 92  EQVL-NGLSASLELPRLLMLGDQEQI----RHGAMDRVSCVLNKRDRIDAELDSVMEGWR 146

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           L R     + +LR++V  +  L          AVE A R  + +   +++N +LRR   
Sbjct: 147 LSRLPRLDRDILRLAVVDLRDLGTPAPVAFSEAVELANRYSDEQGR-RMINGVLRRFHD 204


>gi|302776778|ref|XP_002971535.1| hypothetical protein SELMODRAFT_412312 [Selaginella moellendorffii]
 gi|300160667|gb|EFJ27284.1| hypothetical protein SELMODRAFT_412312 [Selaginella moellendorffii]
          Length = 422

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
           D     P   FD VL+DAPCS+ G   R          + + + A +QR+L  + +  VK
Sbjct: 356 DMIKSFPPNSFDRVLLDAPCSALGL--RPRLFAAEETLESLGRHAIYQRRLFDRAVELVK 413

Query: 357 PGGIVVFSN 365
            GG +V+S 
Sbjct: 414 AGGTLVYST 422


>gi|87307314|ref|ZP_01089459.1| hypothetical protein DSM3645_17365 [Blastopirellula marina DSM
           3645]
 gi|87290054|gb|EAQ81943.1| hypothetical protein DSM3645_17365 [Blastopirellula marina DSM
           3645]
          Length = 389

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 20/131 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            VLD+    GG        G       +D S + ++  R N +R  L       +DAFD+
Sbjct: 217 RVLDMFCYTGGFALAAAKLGGASEVIGIDGSDKAIDLARRNAERNGLSNVRFESVDAFDH 276

Query: 302 -----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FDAV++D P              +T+   +I ++      +  Q ++ + 
Sbjct: 277 LKALVDAGEKFDAVILDPP-------------KFTKTRRNINEALKAYYHINRQAVNLLN 323

Query: 357 PGGIVVFSNCS 367
           PGGI+V  +CS
Sbjct: 324 PGGILVTCSCS 334


>gi|110835389|ref|YP_694248.1| hypothetical protein ABO_2528 [Alcanivorax borkumensis SK2]
 gi|110648500|emb|CAL17976.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 401

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 21/181 (11%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAE------DIIEM 296
            VLD+ +  GG   Q  ++GA+     D S+   + +  N     +         D    
Sbjct: 226 RVLDVFSYCGGWGVQAALAGAESVTCVDGSEIATDYVHRNAQLNGVADTVGSIQGDAFAA 285

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + +D V++D P              + +   D          +    +  VK
Sbjct: 286 MKQLIADGEKYDLVVLDPPA-------------FIKRKKDFKNGLAGYHAINELAMRLVK 332

Query: 357 PGGIVVFSNCSLD-KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           PGG +V ++CS+    +    V             V           +  A++   +++ 
Sbjct: 333 PGGYLVSASCSMHMPAERLLEVVHSSARHIDRSIQVVGYEGQGPDHPVHPAIAETAYLKT 392

Query: 416 T 416
            
Sbjct: 393 W 393


>gi|126465333|ref|YP_001040442.1| fmu protein [Staphylothermus marinus F1]
 gi|126014156|gb|ABN69534.1| fmu protein [Staphylothermus marinus F1]
          Length = 58

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
             + E +++  L       EL+PLN  + +S  +       G +R  P +         G
Sbjct: 2   PWEGEYIIRDFLEKHR-DAELIPLNKPFKQSPILP------GTMRAWPHI--------HG 46

Query: 430 MDGFFAVALRRL 441
             GF+   L++ 
Sbjct: 47  TIGFYYALLKKK 58


>gi|33860569|ref|NP_892130.1| transcription antitermination protein NusB [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633511|emb|CAE18468.1| Antitermination protein NusB [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 209

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 56  TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
            +  L  ID+ +D V+    L R     + +LR++   I +LD       D AV  A + 
Sbjct: 128 IINNLKSIDSEIDEVMDRWRLKRLPRVDRDILRLAYVDIHFLDTPVAVACDEAVNLANKY 187

Query: 115 KENRHFAKLVNSILRR 130
            + +    ++N +LRR
Sbjct: 188 CDTQGRK-MINGVLRR 202


>gi|239948522|ref|ZP_04700275.1| transcription antitermination factor NusB [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239922798|gb|EER22822.1| transcription antitermination factor NusB [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 156

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 7   ARLVSSHLLSC-VMRKRISLTCL----LDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56
           AR+ +   +   +++    +  +    L     +++   L +  +        + +V   
Sbjct: 12  ARIAAVQAIYQNILQNNDDMDDIMQNILSFYQNNNSITDLPENLKISLSISHFKMLVKSV 71

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
              + ++D ++D  L            L+ LLR  + ++L+        V++   + A  
Sbjct: 72  FENINKLDEIIDNHLTNNKDPAHMLILLRALLRAGICELLFCPTTPAKVVINEYTDIAND 131

Query: 114 DKENRHFAKLVNSILRRVSREK 135
              N H    VNS+L ++++E 
Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEY 152


>gi|83319650|ref|YP_424054.1| N utilization substance protein B (nusB), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283536|gb|ABC01468.1| N utilization substance protein B (nusB), putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 132

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV-LDFVL 71
            LL     K   L   +D  Y D    + +  ++ L+  I  +  + +  I+ + ++   
Sbjct: 12  KLLIQAFYKYQLLNASIDYIYQDVLDDVQNFNNKQLLFEINLIAEKQVDLINHININISS 71

Query: 72  ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                R    ++ +L V   +ILY D      ++  V   K  + +
Sbjct: 72  NWKWDRIPAVIRAILIVGTYEILYTDTPKPVTINEMVNYVKEIEPD 117


>gi|254428061|ref|ZP_05041768.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
 gi|196194230|gb|EDX89189.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
          Length = 398

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 21/181 (11%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAE------DIIEM 296
            VLD+ +  GG   Q  ++GA+     D S+   + +  N +   +         D    
Sbjct: 223 RVLDVFSYCGGWGVQAALAGAESVTCVDGSEMATDYVHRNAELNGVADTVGSIQGDAFAA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + +D V++D P              + +   D          +    +  VK
Sbjct: 283 MKQLIADGEKYDLVVLDPPA-------------FIKRKKDFKNGLAGYHAINELAMRLVK 329

Query: 357 PGGIVVFSNCSLD-KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
           PGG +V ++CS+    +    V             V           +  A++   +++ 
Sbjct: 330 PGGYLVSASCSMHMPAERLLDVVHSSARHIDRSIQVVGYEGQGPDHPVHPAIAETAYLKT 389

Query: 416 T 416
            
Sbjct: 390 W 390


>gi|282856378|ref|ZP_06265657.1| transcription antitermination factor NusB [Pyramidobacter piscolens
           W5455]
 gi|282585749|gb|EFB91038.1| transcription antitermination factor NusB [Pyramidobacter piscolens
           W5455]
          Length = 174

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL-ISS 74
             V                +S    +   D         +  R LP IDA+++       
Sbjct: 51  EAVAENGAEAESGETDADEESVLTRVPFADYRRSCEHACLVRRALPEIDALIETYSTEWK 110

Query: 75  LPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
             R     + ++R+++ + ++   V     +  AV  AK    +   ++ VN +L R
Sbjct: 111 TERMSLVDRTIIRLALYEAVIAKKVPPGVALSEAVRLAKEY-GSDDSSRFVNGVLAR 166


>gi|308272930|emb|CBX29534.1| N utilization substance protein B homolog [uncultured
           Desulfobacterium sp.]
          Length = 90

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118
           P ID +++    +  + R     + ++R++V ++++  D+     ++ A++  K+     
Sbjct: 5   PEIDGIIERFSSNWKISRMSCVDRNIMRIAVFELVWCDDIPCKVSINEAIDIGKKY-GTD 63

Query: 119 HFAKLVNSILRR 130
                +N IL  
Sbjct: 64  ESGPFINGILDS 75


>gi|149049414|gb|EDM01868.1| rCG29759, isoform CRA_a [Rattus norvegicus]
 gi|149049415|gb|EDM01869.1| rCG29759, isoform CRA_a [Rattus norvegicus]
 gi|149049416|gb|EDM01870.1| rCG29759, isoform CRA_a [Rattus norvegicus]
          Length = 420

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 14/163 (8%)

Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197
           A      ++   +L   +    ++   +A   P  I L            A  L      
Sbjct: 255 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 314

Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
                     G+ + +    I + P +  G + +Q AS+ +PV       +  +LD+C A
Sbjct: 315 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 374

Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
           PGGKT+ +   + +   + A D +  RL+ +  NL RL +   
Sbjct: 375 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNT 417


>gi|116491235|ref|YP_810779.1| transcription termination factor [Oenococcus oeni PSU-1]
 gi|118586758|ref|ZP_01544195.1| transcription termination protein NusB [Oenococcus oeni ATCC
           BAA-1163]
 gi|290890780|ref|ZP_06553847.1| hypothetical protein AWRIB429_1237 [Oenococcus oeni AWRIB429]
 gi|116091960|gb|ABJ57114.1| Transcription termination factor [Oenococcus oeni PSU-1]
 gi|118432846|gb|EAV39575.1| transcription termination protein NusB [Oenococcus oeni ATCC
           BAA-1163]
 gi|290479552|gb|EFD88209.1| hypothetical protein AWRIB429_1237 [Oenococcus oeni AWRIB429]
          Length = 130

 Score = 50.7 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 11/135 (8%)

Query: 1   MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
           M  S    R +S   +  +         LL           +          +V+     
Sbjct: 1   MSLSRQQIRELSFQAIFALEINSDQDKALLKKVL--FKQNTIDD----YFNELVDGVFAV 54

Query: 60  LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKE 116
              ++      L    SL R   +    +++ + ++   +D+     +D A E AK +  
Sbjct: 55  HKELEEKYKPYLKDNWSLERISKTADIAMQIGLFELTSRIDIPKKVSLDQATELAK-NFG 113

Query: 117 NRHFAKLVNSILRRV 131
           +    K VN +L   
Sbjct: 114 DESDGKFVNGVLAHF 128


>gi|257463858|ref|ZP_05628244.1| transcription antitermination protein NusB [Fusobacterium sp. D12]
 gi|317061389|ref|ZP_07925874.1| N utilization substance protein B [Fusobacterium sp. D12]
 gi|313687065|gb|EFS23900.1| N utilization substance protein B [Fusobacterium sp. D12]
          Length = 138

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 3/135 (2%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +   AR      +     +  S+    +            +  ++ +             
Sbjct: 6   TRREAREELFKWIFQTEIQGNSMEKAFEYSSLREEIEK-DEVTKLFLERYRKGLAEHREE 64

Query: 63  IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           I+  +   +      R  Y  + LL+++V ++ + D+    +V+ AVE AK    +    
Sbjct: 65  IETKIQAAMTDWDFSRIGYVEKSLLKLAVYEMYFEDLPVEIIVNEAVEIAK-IYGDVKTH 123

Query: 122 KLVNSILRRVSREKI 136
           + +N +L +V + K 
Sbjct: 124 EFINGVLAKVIKMKQ 138


>gi|86609546|ref|YP_478308.1| transcription antitermination protein NusB [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|119390840|sp|Q2JHC7|NUSB_SYNJB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|86558088|gb|ABD03045.1| transcription antitermination factor NusB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 291

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 46  QILVRAIVNVTLR-FLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYA 102
           +     ++   LR     IDA L   L    L R     + +LR++V ++  L       
Sbjct: 183 RAYALQLL-TALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSPVKV 241

Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
            ++ AVE AK+   +   A  VN +LRRV   ++E  
Sbjct: 242 AINEAVELAKKY-GDPEAAAFVNGVLRRVVDSQMETH 277


>gi|327274719|ref|XP_003222124.1| PREDICTED: putative methyltransferase NSUN6-like [Anolis
           carolinensis]
          Length = 430

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 95/273 (34%), Gaps = 65/273 (23%)

Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263
           E I   P F        ++Q+  +++   +        +LD+CAAPGGKT  L   +   
Sbjct: 182 EPIYLSPSFDNLLPSYLFLQNLPSAVVSYVLNPQPGERILDMCAAPGGKTTHLATLMHDE 241

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--------------FDA 309
            +V ALD    +++K++ N   L L        D                       FD 
Sbjct: 242 GEVIALDKIADKVKKIKQNASSLKLNCIKTFCYDGTKALEISKRADGQEGPPFVPESFDR 301

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           +L+DAPCS  G   + P++ ++    ++      QR+L     S V+           + 
Sbjct: 302 ILLDAPCSGMG---QRPNMAFSWSLKEVTSYQPLQRRLF----SVVR-----------IH 343

Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429
           + +        + S+P+ + L P          +   LSPE   ++     +  + V   
Sbjct: 344 RLEETF---WAIESNPL-LPLCPKEPHIGGEGMIGAGLSPEQLKQL--QRFDPSEAVLQP 397

Query: 430 MD---------------------GFFAVALRRL 441
           MD                     GFF     ++
Sbjct: 398 MDLNSLQSVKHEDLIRLANKDCIGFFIAKFIKV 430


>gi|115372766|ref|ZP_01460072.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310823456|ref|YP_003955814.1| hypothetical protein STAUR_6230 [Stigmatella aurantiaca DW4/3-1]
 gi|115370247|gb|EAU69176.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309396528|gb|ADO73987.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 394

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 18/132 (13%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY---- 301
           LD  +  GG   QL     +VTA+++S+    +LR N     L   +++  +AFD+    
Sbjct: 226 LDCFSYVGGFALQLATRAQRVTAVEISEAAAAQLRDNAAANRLTNLEVVTANAFDFLRDA 285

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD +++D P              + ++ D +  +    +++ L+ +  ++PGG 
Sbjct: 286 VDEGRRFDTIVLDPPS-------------FAKNKDAVAAALRGYKEINLRAMQLLRPGGF 332

Query: 361 VVFSNCSLDKQD 372
           ++ ++C+    +
Sbjct: 333 LISASCTYHVDE 344


>gi|237739332|ref|ZP_04569813.1| transcription antitermination protein NusB [Fusobacterium sp.
           2_1_31]
 gi|229422940|gb|EEO37987.1| transcription antitermination protein NusB [Fusobacterium sp.
           2_1_31]
          Length = 152

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRIS---LTCLLDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
            R     ++  V     +   L    D+   ++      LS+     ++  V        
Sbjct: 19  VREELFKIVFGVEATESTSEELEKAFDIYLSNNEDFVSTLSESQLKFLQTSVKGISENYD 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I   +     +    R     + LL ++  + L  +     V +  VE AK    N   
Sbjct: 79  NIKDTIKANTQNWAYERIGLVERTLLIIATYEFLKANTPIEVVANETVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + VN IL  
Sbjct: 138 YEFVNGILAN 147


>gi|108803688|ref|YP_643625.1| SAM-dependent methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|108764931|gb|ABG03813.1| SAM-dependent methyltransferase [Rubrobacter xylanophilus DSM 9941]
          Length = 391

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 20/155 (12%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---- 299
            VLD+ +  GG         A V A+D S   LE+ R N     L     +E +AF    
Sbjct: 220 RVLDVFSYGGGFALHAARRAASVEAVDSSAAALEQARENARLNGLGNLSFVEANAFDLLR 279

Query: 300 -DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 + +D V++D P              + R   D+ ++A   +++ L+ +  + PG
Sbjct: 280 ARSDAGEAYDTVILDPPA-------------FARTRRDLPRAARAYKEINLRAMKLLAPG 326

Query: 359 GIVVFSNCS--LDKQDSEEVVQKVLRSSPIPVELV 391
           G++V  +CS  L ++  E V++     +   + ++
Sbjct: 327 GVLVTCSCSYHLSREAMEGVLRSAAADAGRSLRVL 361


>gi|188997200|ref|YP_001931451.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932267|gb|ACD66897.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 168

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            AR +S  +L     ++  L  +L+       F   S   +  V  +VN        ID 
Sbjct: 18  AARDLSMRILFAYDFRKEDLFNVLEEFLNTKKF---SPEIKEYVLKVVNFYNENSQEIDD 74

Query: 66  VLDFVLIS-SLPRKKYSLQQLLRVSVAQIL 94
           ++   L +    R  Y  + +LR+ V+++L
Sbjct: 75  IIKSHLKNWRFERIGYIERAVLRLGVSELL 104


>gi|116514375|ref|YP_813281.1| transcription termination factor [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093690|gb|ABJ58843.1| Transcription termination factor [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 122

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDV-ADYAV 103
              + +V+  +     +   L   L     L R   +   +L V++ ++LY  V  D + 
Sbjct: 33  AYSQELVSGVIDKQAELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSA 92

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           ++ A+       + +  A  +N IL    +
Sbjct: 93  INEALNLCDEFDDPKSKA-FINGILANFVQ 121


>gi|295425233|ref|ZP_06817936.1| transcription antitermination factor NusB [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065009|gb|EFG55914.1| transcription antitermination factor NusB [Lactobacillus
           amylolyticus DSM 11664]
          Length = 131

 Score = 50.3 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 7/130 (5%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
             +R V+   +   +  +       ++E        L Q      + ++   +     + 
Sbjct: 4   HESRKVAMQAIF--LANQDPELTTAEVEVKTVEMLDLEQL-SAYSKTLIEGVMLKRDELK 60

Query: 65  AVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
             +   L     + R       +L +++ +I    ++   A V+ A+     D  +    
Sbjct: 61  EAIAAHLKKGWRIERVNPITIAILEIALYEIKDSAEIEPKAAVNEALNLC-DDFTDPDAK 119

Query: 122 KLVNSILRRV 131
             +N IL   
Sbjct: 120 PFINGILANF 129


>gi|260436645|ref|ZP_05790615.1| transcription antitermination factor NusB [Synechococcus sp. WH
           8109]
 gi|260414519|gb|EEX07815.1| transcription antitermination factor NusB [Synechococcus sp. WH
           8109]
          Length = 211

 Score = 50.3 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SS 74
             V+   +S +  L           +    +      V   L     ID  LD V+    
Sbjct: 92  EQVL-NGLSASLELPRLLLLGDQEQI----RRGAMERVQKVLTQREGIDRRLDQVMEGWR 146

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           L R     + +LR++V  +  L        + AVE A R  +++   +++N +LRR   
Sbjct: 147 LTRLPRIDRDILRLAVVDLESLRTPAPVAFNEAVELANRYSDDQGR-RMINGVLRRFHD 204


>gi|261366965|ref|ZP_05979848.1| transcription antitermination factor NusB [Subdoligranulum
           variabile DSM 15176]
 gi|282571083|gb|EFB76618.1| transcription antitermination factor NusB [Subdoligranulum
           variabile DSM 15176]
          Length = 138

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 36  SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQIL 94
            A     + D    R ++         +DA++   L   +L R        LR+ +A++L
Sbjct: 31  PAGAEQPEAD-AFARQLLAAMNDHSEELDALIAGHLKGWTLNRVPRVSLVALRLGLAEML 89

Query: 95  Y-LDVADYAVVDLAVEQAKRDKEN 117
           Y  +      ++ AVE  K+   +
Sbjct: 90  YGEEQKPGVAINEAVELVKKYGAD 113


>gi|116074285|ref|ZP_01471547.1| transcription antitermination protein NusB [Synechococcus sp.
           RS9916]
 gi|116069590|gb|EAU75342.1| transcription antitermination protein NusB [Synechococcus sp.
           RS9916]
          Length = 213

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SS 74
             V+   +S +  L      +    +    +      V + +     IDA LD V+    
Sbjct: 92  EQVL-NGLSSSLELPRLLALADQETV----RHGAMRRVTLVMEQRSSIDARLDGVMEGWR 146

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           L R     + +LR++V     L        + AVE A R  +++   +++N +LRR
Sbjct: 147 LSRLPRIDRDILRLAVVDFTSLKTPSAVACNEAVELANRYSDDQGR-RMINGVLRR 201


>gi|313234006|emb|CBY19582.1| unnamed protein product [Oikopleura dioica]
          Length = 416

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 19/139 (13%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +   D V ++   S       H  +               Q+  L + +   +PGG + +
Sbjct: 290 ESTNDRVSMNEDSSLNIFHPTHTHIR--------QSMPISQKNQLKKALQLCRPGGHITY 341

Query: 364 SNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            + SL    +E VVQ  ++       I V  VPL+   +   ++           + PDM
Sbjct: 342 VSNSLSHLQNEYVVQAAVKEVYIEHSITVRSVPLHFIPFCLPELNFYTESRLGQMVVPDM 401

Query: 420 LEKIDGVSSGMDGFFAVAL 438
            +            +   L
Sbjct: 402 GKNFGPK-------YVCKL 413


>gi|33862283|ref|NP_893843.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640396|emb|CAE20185.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9313]
          Length = 222

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKK 79
             +S +  +           +    ++     V + +     IDA +D V+    L R  
Sbjct: 107 NGVSTSLEISRLLALGNQEQI----RLGALERVRLVIEQRNSIDASIDAVMEGWRLSRLP 162

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              + +LR++V  +  L        + AVE A R  +++   +++N +LRR+  
Sbjct: 163 RIDRDILRLAVVDLTALQTPFAVACNEAVELAHRYSDDQGR-RMINGVLRRLHD 215


>gi|313124106|ref|YP_004034365.1| transcription termination factor [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280669|gb|ADQ61388.1| Transcription termination factor [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 110

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDV-ADYAV 103
              + +V+  +     +   L   L     L R   +   +L V++ ++LY  V  D + 
Sbjct: 21  AYSQELVSGVIDKQTELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSA 80

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           ++ A+       + +  A  +N IL    +
Sbjct: 81  INEALNLCDEFDDPKSKA-FINGILANFVQ 109


>gi|238570593|ref|XP_002386880.1| hypothetical protein MPER_14687 [Moniliophthora perniciosa FA553]
 gi|215440092|gb|EEB87810.1| hypothetical protein MPER_14687 [Moniliophthora perniciosa FA553]
          Length = 96

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDI------VKSACFQRKLLLQGISFVKPG-GIVV 362
           +L+D  CS +G + R   +L      D        K A FQ  ++   + F  P    + 
Sbjct: 1   ILLDPSCSGSGIVNRLDYLLEQEGESDKELESRLQKLAGFQLLMIKHAMKF--PNIKRIA 58

Query: 363 FSNCSLDKQDSEEVVQKVLRS 383
           +S CS+   ++E VV   L+S
Sbjct: 59  YSTCSIHATENERVVCAALKS 79


>gi|328772960|gb|EGF82997.1| hypothetical protein BATDEDRAFT_21288 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 764

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 79/502 (15%), Positives = 148/502 (29%), Gaps = 91/502 (18%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLE-----YGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           +++ +L  ++ +   +  +           +         D++L   +V  T++FLP +D
Sbjct: 79  LAAEILENIVNEGTFVGSIRSRYKMFGKTHEPEHAGREMSDRVL--KLVYGTMKFLPYVD 136

Query: 65  AVL---------DFVLISSLPRKKYSLQQLLRVSVAQILYLDVA---------------- 99
            +L         +  L  S+   K  L  L++       Y                    
Sbjct: 137 HILVKTQFLVFNNQFLD-SIGLIKVLLYDLMK---YHFDYTKYPGIQYTLPSSTNPADAL 192

Query: 100 ----DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155
                   V    E     +     +     I +R S +           +I+P   +ER
Sbjct: 193 YQTYTSTTVKEMDEALCSFQIKLSASYARLRIEKRASGDTSREQM----ENILPLDVRER 248

Query: 156 LENFYGKERVLA-----ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK---- 206
                   + L      IS   +  +  +      +++++   + V     G  +     
Sbjct: 249 EMMAVDMPKTLRVNTLKISKELVGHMLEEEGYHVCLKSYSEIPDNVHKNNKGNLICLDDE 308

Query: 207 ---------ELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGK 255
                     L   I + P    G    QD ++   +Q           ++D  A  G K
Sbjct: 309 MDNLFLIPPNLFADIKAGPLVNNGFLIFQDKASVYGMQHLCSLVSEGDQIIDARAGCGIK 368

Query: 256 TAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FD 308
            A L         V A +    RLE L+ N          IIE D      +        
Sbjct: 369 AASLSTLAGKSGTVFAFENRPGRLETLKSNTKLFGCSNVSIIEGDFGLCDTQDPRFSNVT 428

Query: 309 AVLVDAPCSSTGTIRRHPDVLW-------TRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            V+++ P S T  I +   +L             D+      Q  LL     F K    V
Sbjct: 429 IVVLEPPNSGTLIIDKLGFMLQEEEFPTDQYSQKDLYSLKRQQIVLLKHAFKFPKV--RV 486

Query: 362 V-FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           V + + S   +++EEVV ++L    +  EL  +  +          +     + + P   
Sbjct: 487 VMYISRSQHSEENEEVVNEILDRYGVDWELSCVLPSITVEKIHDYEIDD--CLTVRPSEQ 544

Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
                      G F    ++  
Sbjct: 545 AGN--------GIFVACFQKKA 558


>gi|313673615|ref|YP_004051726.1| nusb antitermination factor [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940371|gb|ADR19563.1| NusB antitermination factor [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 141

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 21/143 (14%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL------- 57
              R  + +L    ++    L  ++D     + F             I+  +L       
Sbjct: 7   TKIRKYALNLYYMHLQNGELLETIVDSLVKYNGFNK----------EILLESLGLLKKAI 56

Query: 58  RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115
                +D ++   L     L R       +LR+++ ++   +     V+D  V  A +  
Sbjct: 57  EKTVFLDELISKYLKQGWDLNRLPMVDLLILRLAIFELFESNDP-IKVIDDYVTLANKY- 114

Query: 116 ENRHFAKLVNSILRRVSREKIEL 138
             ++    +N IL ++  +    
Sbjct: 115 SEQNSPGYINGILEKIKNDFGLH 137


>gi|21753330|dbj|BAC04325.1| unnamed protein product [Homo sapiens]
          Length = 293

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
           VV+  CS+  +++E VV+K L       + +      ++     + L     I+++ D  
Sbjct: 9   VVYCTCSVFPEENEAVVKKALE-----FQDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKF 63

Query: 421 EKIDGVSSGMDGFFAVALRR 440
            +++      +G F   L R
Sbjct: 64  FRMEPSEI-TNGCFLSILTR 82


>gi|300771100|ref|ZP_07080976.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761770|gb|EFK58590.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 304

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               L     K  S       +  +     L   D+  V  ++  T+R+     +++   
Sbjct: 166 VLQALIAKTFKNFSSEIPQQNKLAELTQNWLD--DREFVLDLLANTIRYGEEYQSLIAAK 223

Query: 71  LISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAK 112
             +    R       L+R+++ +++ +  +     ++  +E +K
Sbjct: 224 TKNWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSK 267


>gi|294783685|ref|ZP_06749009.1| transcription antitermination factor NusB [Fusobacterium sp.
           1_1_41FAA]
 gi|294480563|gb|EFG28340.1| transcription antitermination factor NusB [Fusobacterium sp.
           1_1_41FAA]
          Length = 152

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 7   ARLVSSHLLSCVMRKRIS---LTCLLDLEYGDSAF--RLLSQRDQILVRAIVNVTLRFLP 61
            R     L+  V     +   L    D+   ++      LS+     ++  V        
Sbjct: 19  VREELFKLVFGVEATESTSEELEKAFDIYLSNNEDFVSTLSENQLKFLQTSVKGISENYD 78

Query: 62  RIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
            I   +     +    R     + LL ++  + L  +     V +  VE AK    N   
Sbjct: 79  NIKDTIKTNTQNWAYERIGLVERTLLIIATYEFLKANTPIEVVANETVELAKEY-GNEKS 137

Query: 121 AKLVNSILRR 130
            + VN IL  
Sbjct: 138 YEFVNGILAN 147


>gi|261349352|gb|ACX71236.1| putative ribosomal RNA small subunit methyltransferase
           [Streptococcus suis]
          Length = 60

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 16/75 (21%)

Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426
           ++  ++++EV+Q+ L++ P   ++   +            +  +G + ITP+  +     
Sbjct: 1   TIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIMVDGCLLITPEQYK----- 47

Query: 427 SSGMDGFFAVALRRL 441
               DGFF   LRR 
Sbjct: 48  ---TDGFFIGQLRRK 59


>gi|85086895|ref|XP_957779.1| hypothetical protein NCU00308 [Neurospora crassa OR74A]
 gi|28918874|gb|EAA28543.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 730

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 24/130 (18%)

Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVE 389
              I   A FQ  LL   +SF      + +S CS+   ++E VV + L            
Sbjct: 450 EARIASLASFQLTLLQHAMSFPAAR-RITYSTCSIHAGENEHVVLRALASDVAKRRGWRV 508

Query: 390 LVPLN----------SAYWKSIDMAMALSPEGWIR--------ITPDMLEKIDGVSS-GM 430
           L                  +++ +   ++ EG +         +   ++         G+
Sbjct: 509 LKRQEQVEGMRRWDVRGEAEAMTLEEGITTEGVMEEKEKEKEEVRDAVIRAYYRDDGRGV 568

Query: 431 DGFFAVALRR 440
            GFF     R
Sbjct: 569 MGFFVAGFVR 578


>gi|307166762|gb|EFN60724.1| tRNA (cytosine-5-)-methyltransferase CG6133 [Camponotus floridanus]
          Length = 302

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 58/172 (33%), Gaps = 32/172 (18%)

Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251
            +L+   + I     +                  Q+  + +P  +     +  VLD+CAA
Sbjct: 131 WQLQLTRKDIRRSEAYFRLHNFLIAETNNGSISRQEVVSMVPPLVLDVKPSHKVLDMCAA 190

Query: 252 PGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           PG KTAQLI               V A D+   R   L     RL+     I   D+   
Sbjct: 191 PGSKTAQLIEMIHADEGNIPPEGFVIANDLDNNRCYMLVHQAKRLNSPNILITNHDSSVM 250

Query: 302 C-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
                           FD +L D PCS  GT+R++PD+       +      
Sbjct: 251 PNFIITNPDGTKDTLKFDRILADVPCSGDGTMRKNPDIWCKWSPANGNNLHG 302


>gi|37520905|ref|NP_924282.1| transcription antitermination protein NusB [Gloeobacter violaceus
           PCC 7421]
 gi|39931743|sp|Q7NKZ0|NUSB_GLOVI RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|35211900|dbj|BAC89277.1| transcription termination factor [Gloeobacter violaceus PCC 7421]
          Length = 211

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKK 79
            R+  +  L      +    +    +     ++   +R    +D +LD  +    + R  
Sbjct: 92  NRVGASLELPEFVRLADELQV----RAYAFELLGAFVREGDNLDKLLDTCMEGWQVERLT 147

Query: 80  YSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
              + +LR+++ +++ L  V     +D AVE AK+        + +N +LRRV + 
Sbjct: 148 RIDRDILRLALVEMVELKSVPFRVAIDEAVELAKKY-STDTAVRFINGVLRRVVQH 202


>gi|78211568|ref|YP_380347.1| transcription antitermination protein NusB [Synechococcus sp.
           CC9605]
 gi|78196027|gb|ABB33792.1| NusB family protein [Synechococcus sp. CC9605]
          Length = 211

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SS 74
             V+   +S +  L           +    +      V   L     ID  LD V+    
Sbjct: 92  EQVL-NGLSASLELPRLLLLGDQEQI----RRGAMERVQKVLTQREGIDKRLDQVMEGWR 146

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           L R     + +LR++V  +  L        + AVE A R  + +   +++N +LRR   
Sbjct: 147 LTRLPRIDRDILRLAVVDLESLRTPAPVAFNEAVELANRYSDEQGR-RMINGVLRRFHD 204


>gi|189501850|ref|YP_001957567.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497291|gb|ACE05838.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 378

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
            LL  ++ K  S   LL  E  D+     +         ++   L     ID ++   + 
Sbjct: 259 KLLHELLSK--SDIELLVKEIEDAMQIGTNAA--SFYDKLIATALEQEKFIDNLIQQHIK 314

Query: 73  S-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
           + S+ R     + ++++ + ++ Y D +     ++  V+ AK+    +   
Sbjct: 315 NWSIERTVLLDRIIIKMGLCEMKYFDSIPTKVAINEYVDLAKKYSTAKSSK 365


>gi|325116024|emb|CBZ51578.1| putative NOL1/NOP2/sun family domain-containing protein [Neospora
           caninum Liverpool]
          Length = 293

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 76/303 (25%), Gaps = 63/303 (20%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83
            L   +   +       ++  D++ + + +   +++   +D +                 
Sbjct: 34  PLDLFVRHYFKCHK--SINSADKLFITSHLYQIVKWKGLLDFL-----------TPPPAA 80

Query: 84  QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143
              R+                                      I  R             
Sbjct: 81  WSSRIRTY----------------------------------FISDRWKLHSTNERLPPH 106

Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPT 200
                PE    RLE   G  + + + +         L V  +    E     L    +  
Sbjct: 107 LRCSFPEPLFARLEAALGTVKAIQVCNILNEDPPTFLRVNSNKISRERLYKFLLNKGVLV 166

Query: 201 GGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254
                     +    + +  LP F  G + +QD ++ +            VLD CA  GG
Sbjct: 167 EKCVNSPFGLVLPQRQKLGDLPEFKSGFFDIQDEASQLVAFKLQVEPGQKVLDYCAGSGG 226

Query: 255 KTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI----IEMDAFDYCPKKLF 307
           KT        +  ++   D  +  L + +  L R  +    +       D      +   
Sbjct: 227 KTLAFGPLLGNTGRLYLHDTREHMLLEAKKRLKRAGIQNYQVLFPHATPDHVFKKLRGQM 286

Query: 308 DAV 310
           D V
Sbjct: 287 DWV 289


>gi|73535497|pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535498|pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535499|pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535500|pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535501|pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535502|pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535503|pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535504|pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
          Length = 382

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 18/134 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--- 300
             LD+ +  GG    L +   +V A+D S   L +   N     L    ++E +AFD   
Sbjct: 212 RALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR 271

Query: 301 --YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 + FD V++D P              + +   D+ ++    +++ L+ I  +K G
Sbjct: 272 RLEKEGERFDLVVLDPPA-------------FAKGKKDVERAYRAYKEVNLRAIKLLKEG 318

Query: 359 GIVVFSNCSLDKQD 372
           GI+  ++CS    +
Sbjct: 319 GILATASCSHHXTE 332


>gi|254468502|ref|ZP_05081908.1| transcription antitermination factor NusB [beta proteobacterium
           KB13]
 gi|207087312|gb|EDZ64595.1| transcription antitermination factor NusB [beta proteobacterium
           KB13]
          Length = 127

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAV 103
           D+    ++++        I   LD  +             +L V+  ++   +D+     
Sbjct: 31  DEEFYNSLIDGIKENYQEILEDLDNFMDKKKEELNPIELSILVVAYYELKTRVDIPFKVS 90

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
           ++ A+E  K       F   VN  L RV+++ 
Sbjct: 91  INEALEITKSFGGQESFK-FVNGSLDRVAKKY 121


>gi|108762606|ref|YP_633707.1| hypothetical protein MXAN_5568 [Myxococcus xanthus DK 1622]
 gi|108466486|gb|ABF91671.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 383

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 18/132 (13%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY---- 301
           LD  +  GG   QL      VTA+++S+    +LR N     L   D++  +AFD+    
Sbjct: 215 LDCFSYVGGFALQLATRARHVTAIEISEAASAQLRENAAANKLNNLDVVVANAFDFLRDA 274

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               K FD +++D P              + ++ D I  +    +++ L+ +  ++PGGI
Sbjct: 275 VDEGKRFDTIVLDPPS-------------FAKNKDAIPAAVRGYKEINLRALQLLRPGGI 321

Query: 361 VVFSNCSLDKQD 372
           ++ ++C+    +
Sbjct: 322 LITASCTYHVDE 333


>gi|313114141|ref|ZP_07799693.1| transcription antitermination factor NusB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623550|gb|EFQ06953.1| transcription antitermination factor NusB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 144

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
               AR  +  L        I L   +     +     +        + ++N        
Sbjct: 6   PRREARENAFLLAFSQTFGDIPLAEAITSHEENDEEHPVD----GFSKHLLNAYYDHSAE 61

Query: 63  IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120
           +D  +   L + ++ R       +LR++VA++L+  +      ++ AVE  K+   +  +
Sbjct: 62  VDDEIRAHLRNWTMERLPRVSLTILRLAVAEMLFGGENKPGVAINEAVELTKKYGADEDY 121


>gi|227540276|ref|ZP_03970325.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239812|gb|EEI89827.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 300

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               L     K  S       +  +     L   D+  V  ++  T+R+     +++   
Sbjct: 162 VLQALIAKTFKNFSSEIPQQNKLAELTQNWLD--DREFVLDLLANTIRYGEEYQSLIAAK 219

Query: 71  LISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAK 112
             +    R       L+R+++ +++ +  +     ++  +E +K
Sbjct: 220 TKNWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSK 263


>gi|124021724|ref|YP_001016031.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962010|gb|ABM76766.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9303]
          Length = 211

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKK 79
             +S +  +           +    ++     V + +     IDA +D V+    L R  
Sbjct: 96  NGVSTSLEIPRLLALGNQEQI----RLGALERVRLVIEKRNSIDASIDAVMEGWRLSRLP 151

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              + +LR++V  +  L        + AVE A R  +++   +++N +LRR+  
Sbjct: 152 RIDRDILRLAVVDLTALQTPSAVACNEAVELAHRYSDDQGR-RMINGVLRRLHD 204


>gi|289617431|emb|CBI55919.1| unnamed protein product [Sordaria macrospora]
          Length = 729

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 45/150 (30%), Gaps = 25/150 (16%)

Query: 315 PCSSTGTIRRHPDVLWTRD-----TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           P ++       P      D        I   A FQ  LL   +SF      + +S CS+ 
Sbjct: 422 PPTTETKEEEPPIKKVLIDDDGPLEARIASLASFQLVLLQHAMSFPAAK-RITYSTCSIH 480

Query: 370 KQDSEEVVQKVL----RSSPIP-----VELVPLNSAYWKSIDMAMALSPEG--------- 411
             ++E VV + L                E V     +    +   A++ EG         
Sbjct: 481 AGENEHVVLRALASDVARRRGWKILKREEQVDGMKRWDVRGEAGEAMAVEGVTEKMDEKE 540

Query: 412 WIRITPDMLEKIDGVSS-GMDGFFAVALRR 440
              +   ++         G+ GFF     R
Sbjct: 541 KEEVRDAVIRAYYRDDGRGVMGFFVAGFVR 570


>gi|261327181|emb|CBH10157.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 496

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
            G + + PGG +V+  CS   Q +E +VQ+++ S     E
Sbjct: 366 NGYAQLNPGGTLVYCTCSFTYQQNEGIVQEMMHSVNADAE 405



 Score = 40.3 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 55/189 (29%), Gaps = 12/189 (6%)

Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
              F +   +  R               +  +P + + R  +     + + +  +C    
Sbjct: 10  PSSFTEEFINYCRAHRLPPQLFHDLRELLPRMPRYVRIRPSDA----QQIILPCSCDQGS 65

Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASAS 231
            +   V  ++ T        +     +            ++  L  +  GV    DA++ 
Sbjct: 66  RVPSDVIHELSTAVGGPTGCVYEVEWLPRPYCLALPRDTAVSQLELYRSGVVSAMDAASI 125

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL 288
             V         +V D+C +PG K + +             D++  RL   R  + +   
Sbjct: 126 AAVVALRPRRGETVWDVCCSPGMKLSFIADAIGEEGSAVGTDINLDRLFAARSVMKKHRA 185

Query: 289 YAEDIIEMD 297
               +   D
Sbjct: 186 NNVCLFVAD 194


>gi|72387243|ref|XP_844046.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62358856|gb|AAX79308.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800578|gb|AAZ10487.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 496

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389
            G + + PGG +V+  CS   Q +E +VQ+++ S     E
Sbjct: 366 NGYAQLNPGGTLVYCTCSFTYQQNEGIVQEMMHSVNADAE 405



 Score = 39.9 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 47/194 (24%), Gaps = 19/194 (9%)

Query: 123 LVNSILRRVSREKIELLQRIAGISIIPE----WFKERLENFYGKERVLAISDACISPLYI 178
           + +   +       E          +P       +E L       R+             
Sbjct: 1   MSDDASQNYPSSFTEEFINYCRAHRLPPQLFHDLRELLPRMPRYVRIRPSDAQQRILPCS 60

Query: 179 DLTVKFDIETWAHKL-----NAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQ 226
                       H+L                L            ++  L  +  GV    
Sbjct: 61  CDQGSRVPSDVIHELSTAVGGPTGCVYEVEWLPRPYCLALPRDTAVSQLELYRSGVVSAM 120

Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNL 283
           DA++   V         +V D+C +PG K + +             D++  RL   R  +
Sbjct: 121 DAASIAAVVALRPRRGETVWDVCCSPGMKLSFIADAIGEEGSAVGTDINLDRLFAARSVM 180

Query: 284 DRLHLYAEDIIEMD 297
            +       +   D
Sbjct: 181 KKHRANNVCLFVAD 194


>gi|228470129|ref|ZP_04055038.1| NusB family protein [Porphyromonas uenonis 60-3]
 gi|228308267|gb|EEK17122.1| NusB family protein [Porphyromonas uenonis 60-3]
          Length = 347

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQ-ILYLDVA 99
           S RD++    +++ TL      DA+L   L +    R       L+ ++VA+ +   D+A
Sbjct: 245 SDRDRLYAHQLLSETLLHREEYDAMLTPRLDNWEQDRVALVDMILMEMAVAEALSCPDIA 304

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
               ++  +E AK   +N   A  +N++L R
Sbjct: 305 LVVTINEYIELAK-VYDNAKSASFINAVLDR 334


>gi|167860643|gb|ACA05102.1| putative N utilization substance protein [Flammeovirga yaeyamensis]
          Length = 200

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 43  QRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVAD 100
             D+     +   TL        ++        + R       L+ +++A++L + ++  
Sbjct: 90  DEDKEFFEDLYKYTLEQEESFKEIIAKKSKKWAIDRIAKVDSILINMALAEMLNFRNIPV 149

Query: 101 YAVVDLAVEQAKRDKENRHF 120
              ++  +E +K+    + +
Sbjct: 150 KVTINEFIEISKQYSTPKSW 169


>gi|88809354|ref|ZP_01124862.1| transcription antitermination protein NusB [Synechococcus sp. WH
           7805]
 gi|88786573|gb|EAR17732.1| transcription antitermination protein NusB [Synechococcus sp. WH
           7805]
          Length = 210

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 16  SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SS 74
             V+   +S +  L      +   ++ +     V+      L     +D  LD V+    
Sbjct: 91  EQVL-NGLSASLELPRLLALADQEMVQKEAMRRVQL----VLDARASLDDQLDGVMEGWR 145

Query: 75  LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           L R     + +LR++V  +  +          AVE A R  + +   +++N +LRR+  
Sbjct: 146 LSRLPRIDRDILRLAVVDLQTMKTPASVACSEAVELANRYSDEQGR-RMINGVLRRLQN 203


>gi|297748961|gb|ADI51507.1| N utilization substance protein B [Chlamydia trachomatis D-EC]
 gi|297749841|gb|ADI52519.1| N utilization substance protein B [Chlamydia trachomatis D-LC]
          Length = 176

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 8/124 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R +    L  +         L+ L   +     +S+++               P 
Sbjct: 28  PKQKLRELVLQALYALEIDPEGEDSLVSLLMTE---ASVSKKNAAYALMFCRAIRANQPD 84

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKEN 117
           +DA+LD  +  ++L R     + +LR+ + +         V    ++       K+   +
Sbjct: 85  LDALLDATIRTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTRLIKKFSYS 144

Query: 118 RHFA 121
              +
Sbjct: 145 EGSS 148


>gi|313886911|ref|ZP_07820614.1| transcription antitermination factor NusB [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923608|gb|EFR34414.1| transcription antitermination factor NusB [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 347

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL-PRKKYSLQQLLRVSVAQ-ILYLDVA 99
           S RD++    +++ TL      DA+L   L +    R       L+ ++VA+ +   D+A
Sbjct: 245 SDRDRLYAHQLLSETLLHREEYDAMLTPRLDNWEQDRVALVDMILMEMAVAEALNCPDIA 304

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
               ++  +E AK    ++  +  +N++L R
Sbjct: 305 LVVTINEYIELAKVYDNSKSAS-FINAVLDR 334


>gi|166154176|ref|YP_001654294.1| transcription antitermination protein NusB [Chlamydia trachomatis
           434/Bu]
 gi|166155051|ref|YP_001653306.1| transcription antitermination protein NusB [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335421|ref|ZP_07223665.1| transcription antitermination protein NusB [Chlamydia trachomatis
           L2tet1]
 gi|238687432|sp|B0B961|NUSB_CHLT2 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|238687451|sp|B0BAU0|NUSB_CHLTB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|165930164|emb|CAP03648.1| Antitermination protein [Chlamydia trachomatis 434/Bu]
 gi|165931039|emb|CAP06602.1| Antitermination protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 168

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 8/124 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R +    L  +         L+ L   +     +S+++               P 
Sbjct: 20  PKQKLRELVLQALYALEIDPEGEDSLVSLLMTE---ASVSKKNAAYALMFCRAIRANQPD 76

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKEN 117
           +DA+LD  +  ++L R     + +LR+ + +         V    ++       K+   +
Sbjct: 77  LDALLDATIRTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTRLIKKFSYS 136

Query: 118 RHFA 121
              +
Sbjct: 137 EGSS 140


>gi|22298329|ref|NP_681576.1| transcription antitermination protein NusB [Thermosynechococcus
           elongatus BP-1]
 gi|32171633|sp|Q8DKS0|NUSB_THEEB RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|22294508|dbj|BAC08338.1| tll0787 [Thermosynechococcus elongatus BP-1]
          Length = 212

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD 105
               A++    R+   I+ +++  ++   L R     + ++ ++V ++ YL+VA    ++
Sbjct: 115 AYAIALLRCLQRYQNEIEELVNRSMVDWQLERLTQLDRAIIEIAVVEMRYLEVAKQVAIN 174

Query: 106 LAVEQAKRDKENRHFAKLVNSILRR 130
            A+E AKR   +    + +N +LRR
Sbjct: 175 EAIELAKRY-SDEGSHRFINGVLRR 198


>gi|297565875|ref|YP_003684847.1| hypothetical protein Mesil_1446 [Meiothermus silvanus DSM 9946]
 gi|296850324|gb|ADH63339.1| conserved hypothetical protein [Meiothermus silvanus DSM 9946]
          Length = 390

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL--DRLHLYAEDIIEMDAFDYCP 303
           LD+ +  G     L  + ++V A+D S   L + + N   +RL L   +    +      
Sbjct: 222 LDVFSYHGSFALHLAANFSRVVAVDSSADALRRAQENAAANRLGLETREANAFEFLREQE 281

Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
           K+   +D +++D P              + +   D+ ++    +++ L+ +  +KPGG++
Sbjct: 282 KQRNLYDLIVLDPPA-------------FAKSKRDLERAYAAYKEINLRAMKLLKPGGVL 328

Query: 362 VFSNCSLDKQD 372
             ++CS    +
Sbjct: 329 ATASCSHHLSE 339


>gi|219121812|ref|XP_002181253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407239|gb|EEC47176.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 435

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 37/184 (20%)

Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDV 271
           L G  +   ++Q+  +++ V         ++LDLCAAPGGK +       + A + A D 
Sbjct: 252 LSGVLDTHAFLQNLPSTVVVHALNPQPGDTILDLCAAPGGKASHVASFTKNQAVILAADR 311

Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------------------------- 306
           S+ ++  ++     L   +   + ++A   C  +                          
Sbjct: 312 SRSKVVAMKQRFLALGCTSIVPLHLNATACCMDEPGRPRCSVAEIRAAAKVSERDGLLNV 371

Query: 307 -------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  FD +L+D PCS+ G   +        D  D++  A +QRK +   ++ +KPGG
Sbjct: 372 KYFFPGSFDRILLDPPCSALGLRPKLQIGPTRVD--DLLAFATYQRKFVPPAVALLKPGG 429

Query: 360 IVVF 363
           I+ +
Sbjct: 430 ILTY 433


>gi|210622490|ref|ZP_03293195.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
 gi|210154203|gb|EEA85209.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
          Length = 173

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 58  RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115
                ID  +D      S+         +LR+++A+I ++D + +   ++ A+E AK   
Sbjct: 94  EKHEEIDEAIDKYAKGWSIMTMPKVDVAILRLAIAEIGFIDSIPEKVSINEAIEMAKMYC 153

Query: 116 ENRHFAKLVNSILRRV 131
           +++   K +N +L   
Sbjct: 154 DDKS-PKFINGVLGSY 168


>gi|15605567|ref|NP_220353.1| transcription antitermination protein NusB [Chlamydia trachomatis
           D/UW-3/CX]
 gi|7387974|sp|O84839|NUSB_CHLTR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|3329303|gb|AAC68429.1| Transcription termination factor [Chlamydia trachomatis D/UW-3/CX]
 gi|296436388|gb|ADH18562.1| transcription antitermination protein NusB [Chlamydia trachomatis
           G/9768]
 gi|296437319|gb|ADH19489.1| transcription antitermination protein NusB [Chlamydia trachomatis
           G/11222]
 gi|296438247|gb|ADH20408.1| transcription antitermination protein NusB [Chlamydia trachomatis
           G/11074]
 gi|297140748|gb|ADH97506.1| transcription antitermination protein NusB [Chlamydia trachomatis
           G/9301]
          Length = 168

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 8/124 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R +    L  +         L+ L   +     +S+++               P 
Sbjct: 20  PKQKLRELVLQALYALEIDPEGEDSLVSLLMTE---ASVSKKNAAYALMFCRAIRANQPD 76

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKEN 117
           +DA+LD  +  ++L R     + +LR+ + +         V    ++       K+   +
Sbjct: 77  LDALLDATIRTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETTRLIKKFSYS 136

Query: 118 RHFA 121
              +
Sbjct: 137 EGSS 140


>gi|46199218|ref|YP_004885.1| hypothetical protein TTC0914 [Thermus thermophilus HB27]
 gi|46196843|gb|AAS81258.1| conserved hypothetical protein [Thermus thermophilus HB27]
          Length = 382

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 18/134 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--- 300
             LD+ +  GG    L +   +V A+D S   L +   N     L    ++E +AFD   
Sbjct: 212 RALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR 271

Query: 301 --YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 + FD V++D P              + +   D+ ++    +++ L+ I  +K G
Sbjct: 272 RLEKEGERFDLVVLDPPA-------------FAKGKKDVERAYRAYKEVNLRAIKLLKEG 318

Query: 359 GIVVFSNCSLDKQD 372
           GI+  ++CS    +
Sbjct: 319 GILATASCSHHMTE 332


>gi|320109081|ref|YP_004184671.1| hypothetical protein AciPR4_3928 [Terriglobus saanensis SP1PR4]
 gi|319927602|gb|ADV84677.1| hypothetical protein AciPR4_3928 [Terriglobus saanensis SP1PR4]
          Length = 438

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 21/134 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL--DRLHLYA-EDIIEMDAF- 299
             LD+C   GG    +      VT +D S+  LE    NL  +R  L A  D +E DAF 
Sbjct: 265 RALDICTYQGGFALHMAKVCDSVTGVDQSRSALEVAERNLDLNRSQLKAQVDWVEADAFE 324

Query: 300 ----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                    + FD +++D P              + +       +    +++ L+ +  +
Sbjct: 325 LLRAYDSDMEKFDTIVLDPPA-------------FAKSKRAAEGAMRGYKEMSLRALRML 371

Query: 356 KPGGIVVFSNCSLD 369
           +PGGI+V  +CS  
Sbjct: 372 RPGGILVTCSCSHH 385


>gi|76789577|ref|YP_328663.1| transcription antitermination protein NusB [Chlamydia trachomatis
           A/HAR-13]
 gi|237803264|ref|YP_002888458.1| transcription antitermination protein NusB [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805185|ref|YP_002889339.1| transcription antitermination protein NusB [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255349237|ref|ZP_05381244.1| transcription antitermination protein NusB [Chlamydia trachomatis
           70]
 gi|255503774|ref|ZP_05382164.1| transcription antitermination protein NusB [Chlamydia trachomatis
           70s]
 gi|255507455|ref|ZP_05383094.1| transcription antitermination protein NusB [Chlamydia trachomatis
           D(s)2923]
 gi|119390756|sp|Q3KKK7|NUSB_CHLTA RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|76168107|gb|AAX51115.1| N utilization substance protein B [Chlamydia trachomatis A/HAR-13]
 gi|231273485|emb|CAX10401.1| Antitermination protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274498|emb|CAX11294.1| Antitermination protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525878|emb|CBJ15360.1| Antitermination protein [Chlamydia trachomatis Sweden2]
 gi|296435464|gb|ADH17642.1| transcription antitermination protein NusB [Chlamydia trachomatis
           E/150]
 gi|296439181|gb|ADH21334.1| transcription antitermination protein NusB [Chlamydia trachomatis
           E/11023]
          Length = 168

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 8/124 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R +    L  +         L+ L   +     +S+++               P 
Sbjct: 20  PKQKLRELVLQALYALEIDPEGEDSLVSLLMTE---ASVSKKNAAYALMFCRAIRANQPD 76

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKEN 117
           +DA+LD  +  ++L R     + +LR+ + +         V    ++       K+   +
Sbjct: 77  LDALLDATIRTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAILIAETTRLIKKFSYS 136

Query: 118 RHFA 121
              +
Sbjct: 137 EGSS 140


>gi|255534372|ref|YP_003094743.1| Transcription termination protein NusB [Flavobacteriaceae bacterium
           3519-10]
 gi|255340568|gb|ACU06681.1| Transcription termination protein NusB [Flavobacteriaceae bacterium
           3519-10]
          Length = 301

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRID-AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VA 99
            + D+   R ++  TL      +  ++  +    + R     + +L  ++ ++ Y     
Sbjct: 204 DEDDREFARRLLKDTLNHWEESEKKLVGRLENWDIERVSLVDKIILVTAITELDYFPLTP 263

Query: 100 DYAVVDLAVEQAKRDKENRH 119
              V++  +E +K    +R 
Sbjct: 264 ARVVINEYIEISKVFSTDRS 283


>gi|55981249|ref|YP_144546.1| hypothetical protein TTHA1280 [Thermus thermophilus HB8]
 gi|82408293|pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
           Putative Sam-Dependent Rna Methyltransferase, In Complex
           With S-Adenosyl-L-Homocysteine
 gi|82408294|pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
           Putative Sam-Dependent Rna Methyltransferase, In Complex
           With S-Adenosyl-L-Homocysteine
 gi|55772662|dbj|BAD71103.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 382

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 18/134 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--- 300
             LD+ +  GG    L +   +V A+D S   L +   N     L    ++E +AFD   
Sbjct: 212 RALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR 271

Query: 301 --YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 + FD V++D P              + +   D+ ++    +++ L+ I  +K G
Sbjct: 272 RLEKEGERFDLVVLDPPA-------------FAKGKKDVERAYRAYKEVNLRAIKLLKEG 318

Query: 359 GIVVFSNCSLDKQD 372
           GI+  ++CS    +
Sbjct: 319 GILATASCSHHMTE 332


>gi|331703119|ref|YP_004399806.1| transcription termination factor NusB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328801674|emb|CBW53827.1| Transcription termination factor NusB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 132

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                 R    ++ +L V   +ILY D      ++  V+  K  + +
Sbjct: 71  SSWKWDRIPAVIRAILIVGTYEILYTDTPKPVTINEMVKYVKEIEPD 117


>gi|239826143|ref|YP_002948767.1| hypothetical protein GWCH70_0604 [Geobacillus sp. WCH70]
 gi|239806436|gb|ACS23501.1| protein of unknown function Met10 [Geobacillus sp. WCH70]
          Length = 394

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           +VLD     G       + GAK   A+D+S+  +E  + N         D +  +AFDY 
Sbjct: 220 TVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVDFVVANAFDYL 279

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    + K+    + + L G+  VK 
Sbjct: 280 REAVRDGKKWDVVIIDPPA-------------FAKSAQAVPKALRGYKDINLNGLKLVKD 326

Query: 358 GGIVVFSNCSLD 369
           GG  V ++CS  
Sbjct: 327 GGFFVTASCSYH 338


>gi|301320813|gb|ADK69456.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 132

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL-VRAIVNVTLRFLPRIDAV 66
           R +             S+  +      D   + +  +D +  +  I     +    I+ +
Sbjct: 11  RKLLIQAFYKYELLNASIDYIHQDILDDV--QNIKNKDVLFEINQISE---KQTDLINHI 65

Query: 67  -LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
            ++        R    ++ +L V   +ILY +      ++  V+  K  + +
Sbjct: 66  NINISSSWKWDRMPAVIRAILIVGTYEILYTNTPKSVTINEMVKYVKEIEPD 117


>gi|255311673|ref|ZP_05354243.1| transcription antitermination protein NusB [Chlamydia trachomatis
           6276]
 gi|255317974|ref|ZP_05359220.1| transcription antitermination protein NusB [Chlamydia trachomatis
           6276s]
          Length = 168

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 8/124 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R +    L  +         L+ L   +     +S+++               P 
Sbjct: 20  PKQKLRELVLQALYALEIDPEGEDSLVSLLMTE---ASVSKKNAAYALMFCRAIRANQPD 76

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKEN 117
           +DA+LD  +  ++L R     + +LR+ + +         V    ++       K+   +
Sbjct: 77  LDALLDATIRTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAVLIAETARLIKKFSYS 136

Query: 118 RHFA 121
              +
Sbjct: 137 EGSS 140


>gi|260654155|ref|ZP_05859645.1| transcription antitermination factor NusB [Jonquetella anthropi
           E3_33 E1]
 gi|260631140|gb|EEX49334.1| transcription antitermination factor NusB [Jonquetella anthropi
           E3_33 E1]
          Length = 165

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 35/133 (26%), Gaps = 19/133 (14%)

Query: 8   RLVSSHLLSCVMRKRISL-----------------TCLLDLEYGDSAFRLLSQRDQILVR 50
           R ++   L  +                          L   +   S    +S  D     
Sbjct: 18  RFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEIDDETASQLPAISAEDCGAAV 77

Query: 51  AIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108
                    L ++D+++   L    LPR     + +LR+   +      V D      AV
Sbjct: 78  QWAERVWSHLDQVDSLIAPCLRGWRLPRLDGVDRAILRLCFFESRVEGSVNDAVAASEAV 137

Query: 109 EQAKRDKENRHFA 121
             AK     +   
Sbjct: 138 ILAKAMGGEQSAK 150


>gi|325272513|ref|ZP_08138890.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51]
 gi|324102356|gb|EGB99825.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51]
          Length = 62

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
          V+  + SL   L  +        + +RD+ L + +   T R+ PR+D +   +L
Sbjct: 14 VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLL 62


>gi|312112164|ref|YP_003990480.1| methyltransferase small [Geobacillus sp. Y4.1MC1]
 gi|311217265|gb|ADP75869.1| methyltransferase small [Geobacillus sp. Y4.1MC1]
          Length = 394

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           +VLD     G       + GAK   A+D+S+  +E  + N         D +  +AFDY 
Sbjct: 220 TVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVDFVVANAFDYL 279

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    + K+    + + L G+  VK 
Sbjct: 280 REAVRDGKKWDVVIIDPPA-------------FAKSAQAVPKALRGYKDINLNGLKLVKD 326

Query: 358 GGIVVFSNCSLD 369
           GG  V ++CS  
Sbjct: 327 GGFFVTASCSYH 338


>gi|295401060|ref|ZP_06811034.1| methyltransferase small [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976853|gb|EFG52457.1| methyltransferase small [Geobacillus thermoglucosidasius C56-YS93]
          Length = 394

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           +VLD     G       + GAK   A+D+S+  +E  + N         D +  +AFDY 
Sbjct: 220 TVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVDFVVANAFDYL 279

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    + K+    + + L G+  VK 
Sbjct: 280 REAVRDGKKWDVVIIDPPA-------------FAKSAQAVPKALRGYKDINLNGLKLVKD 326

Query: 358 GGIVVFSNCSLD 369
           GG  V ++CS  
Sbjct: 327 GGFFVTASCSYH 338


>gi|283769473|ref|ZP_06342369.1| transcription antitermination factor NusB [Bulleidia extructa
           W1219]
 gi|283103741|gb|EFC05127.1| transcription antitermination factor NusB [Bulleidia extructa
           W1219]
          Length = 124

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 8/126 (6%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M   +  R  +   L   +     +  +++      +F  L + D   +R +V      +
Sbjct: 1   MSRSVQ-REKAVLSLYAYLSLPRDIHSIME-----DSFGSLDKADPYFIR-VVENAQEHI 53

Query: 61  PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
                 ++ VL + +  R     + +L +  A+    +VA   ++D AVE AK   E   
Sbjct: 54  QEYTNYINQVLENWTFDRLGTIEKAILLIGCAEFSLKEVAAVIIIDEAVELAKTYGEADS 113

Query: 120 FAKLVN 125
           +  + N
Sbjct: 114 YRLINN 119


>gi|325954222|ref|YP_004237882.1| NusB antitermination factor [Weeksella virosa DSM 16922]
 gi|323436840|gb|ADX67304.1| NusB antitermination factor [Weeksella virosa DSM 16922]
          Length = 306

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + DQ   + +  +T++   +    +  +  +  L R       +L +++ +   +  + 
Sbjct: 196 DEEDQKFAQDLFRLTVKHQSQNKEFIGQMAENWELDRIAAVDLIILEMAITEFKHFPSIP 255

Query: 100 DYAVVDLAVEQAKRDKENRH 119
               ++  +E AK     + 
Sbjct: 256 TKVTINEYIELAKNYSTEKS 275


>gi|256043271|ref|ZP_05446208.1| Fmu (Sun) domain-containing protein [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256111725|ref|ZP_05452709.1| Fmu (Sun) domain-containing protein [Brucella melitensis bv. 3
          str. Ether]
 gi|326410533|gb|ADZ67597.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella melitensis
          M28]
 gi|326553824|gb|ADZ88463.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella melitensis
          M5-90]
          Length = 79

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 9  LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            +  +L  +   +   + +L        F      D+ ++  IV   LR    I   +D
Sbjct: 8  QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSILWRMD 65


>gi|212640143|ref|YP_002316663.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212561623|gb|ACJ34678.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 397

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--- 299
           +VLD     G       + GAK   A+D+S+  +E  + N +       D +  +AF   
Sbjct: 223 TVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAELNGFTNVDFVVANAFDYL 282

Query: 300 --DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    + K+    + + L G+  VK 
Sbjct: 283 RECVQQGKKWDVVIIDPPA-------------FAKSAHAVPKALAGYKDINLNGLKLVKD 329

Query: 358 GGIVVFSNCSLD 369
           GG  V ++CS  
Sbjct: 330 GGFFVTASCSYH 341


>gi|328951117|ref|YP_004368452.1| methyltransferase small [Marinithermus hydrothermalis DSM 14884]
 gi|328451441|gb|AEB12342.1| methyltransferase small [Marinithermus hydrothermalis DSM 14884]
          Length = 388

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-----A 298
             LD+ +  G     L     +V A+D S   L +   N     L   + IE +      
Sbjct: 218 RALDVFSYHGSFALHLARFAQQVEAVDTSADALARAEANARENQLVNLEFIEANAFDFLR 277

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 + +D +++D P              + +   D+ ++    +++ L+ +  ++PG
Sbjct: 278 HKARAGERYDCIVLDPPA-------------FAKKRADLERAYAAYKEVNLRAMKLLRPG 324

Query: 359 GIVVFSNCSLDKQD 372
           G++  ++CS    +
Sbjct: 325 GVLATASCSYHLTE 338


>gi|138894205|ref|YP_001124658.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265718|gb|ABO65913.1| Predicted SAM-dependent methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 399

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           +VLD     G       + GAK   A+D+S+  +E  + N         D +  +AFDY 
Sbjct: 225 TVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVDFVVANAFDYL 284

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    + K+    + + L G+  VK 
Sbjct: 285 RESVRAGKQWDVVIIDPPA-------------FAKSAHAVPKALRGYKDINLNGLKLVKD 331

Query: 358 GGIVVFSNCSLD 369
           GG  V S+CS  
Sbjct: 332 GGFFVTSSCSYH 343


>gi|323702677|ref|ZP_08114338.1| PUA domain containing protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323532340|gb|EGB22218.1| PUA domain containing protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 391

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 23/182 (12%)

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-- 299
             VLD     G  +      GA+    LD++   LE  R N            +      
Sbjct: 218 CRVLDCFCHTGTFSMYAAKFGAREVLGLDIAAPALEVARVNARLNGYSDICTFKETNSFD 277

Query: 300 ----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                    + FD V++D P              +T+    +  +    +++ L+G+  +
Sbjct: 278 ELRAMEKAGEKFDVVILDPPA-------------FTKSRQAVEGAIRGYKEINLRGMKLL 324

Query: 356 KPGGIVVFSNCSLDKQDSE--EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
            PGG ++  +CS   ++    EVV    R +   + LV L     K   M +A+    ++
Sbjct: 325 PPGGFLITCSCSYHMKEDIFLEVVMDAGRDAGRQLRLVELR-RQAKDHPMLLAMPENHYL 383

Query: 414 RI 415
           + 
Sbjct: 384 KC 385


>gi|153006689|ref|YP_001381014.1| hypothetical protein Anae109_3851 [Anaeromyxobacter sp. Fw109-5]
 gi|152030262|gb|ABS28030.1| protein of unknown function Met10 [Anaeromyxobacter sp. Fw109-5]
          Length = 388

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301
             LD  A  GG   QL      VTA+++       LR N+        +++E +AFDY  
Sbjct: 218 RCLDCFAYAGGFALQLATRAEHVTAVEMQPTAAALLRENVTLNLAANVEVVEANAFDYLR 277

Query: 302 ---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                +  FD V++D P              + +  D +  +    +++ L+ +  ++PG
Sbjct: 278 DRAEEEPAFDLVVLDPPA-------------FAKSKDALAAARRGYKEVNLRALQVLRPG 324

Query: 359 GIVVFSNCSLDKQD 372
           GI+V ++CS    +
Sbjct: 325 GILVTASCSYHMAE 338


>gi|196250695|ref|ZP_03149383.1| protein of unknown function Met10 [Geobacillus sp. G11MC16]
 gi|196209774|gb|EDY04545.1| protein of unknown function Met10 [Geobacillus sp. G11MC16]
          Length = 394

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           +VLD     G       + GAK   A+D+S+  +E  + N         D +  +AFDY 
Sbjct: 220 TVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVDFVVANAFDYL 279

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    + K+    + + L G+  VK 
Sbjct: 280 RESVRAGKQWDVVIIDPPA-------------FAKSAHAVPKALRGYKDINLNGLKLVKD 326

Query: 358 GGIVVFSNCSLD 369
           GG  V S+CS  
Sbjct: 327 GGFFVTSSCSYH 338


>gi|168703282|ref|ZP_02735559.1| methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 395

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 34/239 (14%)

Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250
             L     P     L+     +V+L    +  +++        V           LD   
Sbjct: 173 QLLWGEPPPPDLSILENGMRFLVNLTEGQKTGYYLDQRDNRAAVARLAP--GKRFLDAFC 230

Query: 251 APGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAE-----DIIEMDAFDYCPK 304
             GG       +GA      D S+  LE  R N     L        ++           
Sbjct: 231 YSGGFGLHAARAGAAEVLCLDGSEPALELARRNAALNGLENVAFERVNVFNHLGTLATSG 290

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
           + FD V++D P              + R+   I ++    R+L    +  + P G++V  
Sbjct: 291 RKFDVVVLDPP-------------KFARNRGAIPEALKGYRRLHQLALKLLAPDGVLVSC 337

Query: 365 NCS-----LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS--PEGWIRIT 416
            C+     LD ++    V             V +      + D  +A++    G+++  
Sbjct: 338 CCTGLITMLDLEEMLAQVA------VEAKRDVQIVERRGPAPDHPVAVTCRESGYLKCL 390


>gi|332300781|ref|YP_004442702.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177844|gb|AEE13534.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM
           20707]
          Length = 347

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQ-ILYLDVA 99
           S RD++    +++ TL      DA+L   L +    R       L+ ++VA+ +   D+A
Sbjct: 245 SDRDRLYAHQLLSETLLHREDYDAMLTPRLDNWEQDRVALVDMILMEMAVAEALNCPDIA 304

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
               ++  +E AK    ++  +  +N++L R
Sbjct: 305 LVVTINEYIELAKVYDNSKSAS-FINAVLDR 334


>gi|87301561|ref|ZP_01084401.1| transcription antitermination protein NusB [Synechococcus sp. WH
           5701]
 gi|87283778|gb|EAQ75732.1| transcription antitermination protein NusB [Synechococcus sp. WH
           5701]
          Length = 204

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +   L      R+S +  L      +    + +      RA     L+    +D+ LD V
Sbjct: 88  AEQAL-----NRLSASLELPRLLMLADQSEIREGAIARTRA----VLQDRDALDSRLDAV 138

Query: 71  LI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +    L R     + +LR++   +           + AVE A R  +++   +++N ILR
Sbjct: 139 MEGWRLGRLPRIDRDILRLAAVDLHTFGTPAPVACNEAVELANRYSDDQGR-RMINGILR 197

Query: 130 R 130
           R
Sbjct: 198 R 198


>gi|91205934|ref|YP_538289.1| transcription antitermination protein NusB [Rickettsia bellii
           RML369-C]
 gi|157826705|ref|YP_001495769.1| transcription antitermination protein NusB [Rickettsia bellii OSU
           85-389]
 gi|119390813|sp|Q1RHG4|NUSB_RICBR RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|166215711|sp|A8GV61|NUSB_RICB8 RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|91069478|gb|ABE05200.1| N utilization substance protein B [Rickettsia bellii RML369-C]
 gi|157802009|gb|ABV78732.1| transcription antitermination protein NusB [Rickettsia bellii OSU
           85-389]
          Length = 156

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 18  VMRKRISLTCLLDLEYGDSAFRLLSQRD--------QILVRAIVNVTLRFLPRIDAVLDF 69
           ++R   ++  +++           S  D            + +V +    + +ID ++  
Sbjct: 24  MLRNNDNIDDIIENVLSFYR-NDTSMTDSPIKISLTISHFKMLVKLVFENIDKIDEIISN 82

Query: 70  VL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNS 126
            L    +       LQ LLR  + ++L+  D+    +++   + A     N H    VNS
Sbjct: 83  HLVNDKNQNHIPILLQALLRSGICELLFFPDIPTKVIINEYTDIANDM-LNDHEIGFVNS 141

Query: 127 ILRRVSREKIELL 139
           IL +++ E     
Sbjct: 142 ILDKIAHENKRFY 154


>gi|256383931|gb|ACU78501.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256384763|gb|ACU79332.1| transcription antitermination factor NusB [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455225|gb|ADH21460.1| transcription antitermination factor NusB [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 132

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGD--SAFRLLSQRDQIL-VRAIVNVTLRFLPRIDAV-LD 68
            LL     K   L   +D  + D     + ++ +D +  +  I     +    I+ + ++
Sbjct: 12  KLLIQTFYKYQLLNASIDYIHQDILDDVQNINNKDVLFEIEQIAK---KQTDLINHININ 68

Query: 69  FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                   R    ++ +L V   +ILY +      ++  V+  K  + +
Sbjct: 69  VSSSWKWDRIPAVIRAILIVGTYEILYTNTPKPVTINEMVKYVKEIEPD 117


>gi|309806415|ref|ZP_07700424.1| putative transcription antitermination protein NusB [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167197|gb|EFO69367.1| putative transcription antitermination protein NusB [Lactobacillus
           iners LactinV 03V1-b]
          Length = 100

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 48  LVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDV-ADYAVV 104
               I+   ++    IDA L   L     L R       +L V + +I    V    + +
Sbjct: 12  YAYEILQGVMKEKSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSAL 71

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRV 131
           + A+         +     +N IL   
Sbjct: 72  NEALNMCDEFSSAKS-KGFINGILANF 97


>gi|307244294|ref|ZP_07526409.1| transcription antitermination factor NusB [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492444|gb|EFM64482.1| transcription antitermination factor NusB [Peptostreptococcus
           stomatis DSM 17678]
          Length = 156

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYA 102
           D   +          +  IDA ++    + +          +LR++VA+I ++  + +  
Sbjct: 66  DSSYLMDAARAVEDNIGAIDAYINEYARNWTTDTMPAVDVAILRLAVAEIKFMFTIPEVV 125

Query: 103 VVDLAVEQAKRDKENRHFA 121
             D AV  AK+  ++  + 
Sbjct: 126 ACDEAVNIAKKYCDDDAYK 144


>gi|42560661|ref|NP_975112.1| transcription termination factor nusB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492157|emb|CAE76754.1| transcription termination factor nusB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
          Length = 132

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL-VRAIVNVTLRFLPRIDAV 66
           R +             S+  +      D   + +  +D +  +  I     +    I+ +
Sbjct: 11  RKLLIQAFYKYELLNASIDYIHQDILDDV--QNIKNKDVLFEINQISE---KQTDLINHI 65

Query: 67  -LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
            ++        R    ++ +L V   +ILY +      ++  V+  K  + +
Sbjct: 66  NINISSSWKWDRIPAVIRAILIVGTYEILYTNTPKSVTINEMVKYVKEIEPD 117


>gi|313897409|ref|ZP_07830952.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
 gi|312957779|gb|EFR39404.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
          Length = 125

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRF 59
           M S    R ++   L            LL  +  +  +      +    +  +    +R+
Sbjct: 1   MNSRHKLRELAMTSLYQHF--------LLQKDIKECVYDNSETNEIDPFLYTVTIDAIRY 52

Query: 60  LPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                  ++  L    +  R  +  Q +L ++  ++         V+D AV  AK+  ++
Sbjct: 53  QDVYIDKINAALRQDWTFARLGFVEQAILMMAACELDLETAPKAIVIDEAVTLAKKYCDD 112

Query: 118 R 118
            
Sbjct: 113 E 113


>gi|262037941|ref|ZP_06011361.1| transcription antitermination factor NusB [Leptotrichia
           goodfellowii F0264]
 gi|261748019|gb|EEY35438.1| transcription antitermination factor NusB [Leptotrichia
           goodfellowii F0264]
          Length = 136

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFL 60
           +    R     LL         +   ++    ++  +   Q D  +  V  IV    +  
Sbjct: 2   TRREIREEIFKLLFEKELIDNDIDKRINEVIEENKIKKEEQIDFLKSYVTEIVE---KEE 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             ++ +   +   +  R     + LL+++  +I   ++     ++  +E AK+   + 
Sbjct: 59  ILVEEIKSILEGWTYERLGTLEKALLKIAFYEITIKNIGYEIAINEVLEIAKKYSYDD 116


>gi|260912453|ref|ZP_05918990.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633425|gb|EEX51578.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 372

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 8/174 (4%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSL 82
                      +       + D+   R +   T+    +    +     +    R  Y  
Sbjct: 190 PANKAKQELLPEYK----DEEDKDFARKLFRSTILNADQYQRYMSENSRNWDFSRLAYMD 245

Query: 83  QQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
             ++++++A++L + ++     ++  VE AK    +R     +N +L  ++R  I   Q 
Sbjct: 246 VVIMQIAIAEMLTFPNIPVSVTINEYVELAKLYSTHRS-GGYINGMLDTIARGLIAHGQM 304

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
           +  +   P   K    +    E+      A      ++     D E  A  +  
Sbjct: 305 MKAMPD-PRPRKHIGHDHKNGEQRQEQHPAQQPDASVEEVANIDNEAHADAVTG 357


>gi|328953673|ref|YP_004371007.1| hypothetical protein Desac_1995 [Desulfobacca acetoxidans DSM
           11109]
 gi|328453997|gb|AEB09826.1| hypothetical protein Desac_1995 [Desulfobacca acetoxidans DSM
           11109]
          Length = 386

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           VLD  +  GG    +      V A++ S   L   + N     ++  D I+ + FD+  K
Sbjct: 217 VLDCFSYQGGFALHVASHAQHVVAVESSALSLGLAQDNARLNRMHNVDWIQANCFDFLKK 276

Query: 305 KL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                  +D +++D P              + +   D   +    + L  + +  +KPGG
Sbjct: 277 AHASSKFYDLIILDPPA-------------FAKSRADQPAAFRGYQDLNRRALQLLKPGG 323

Query: 360 IVVFSNCSLD 369
           I +  +CS +
Sbjct: 324 IFITCSCSYN 333


>gi|256425852|ref|YP_003126505.1| RNA methylase [Chitinophaga pinensis DSM 2588]
 gi|256040760|gb|ACU64304.1| putative RNA methylase [Chitinophaga pinensis DSM 2588]
          Length = 390

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 20/131 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---- 298
            VL+     G  +      GAK    LD+S+  +   R N +  +L      +       
Sbjct: 218 DVLEAFCYTGTFSCHAGHYGAKSVLGLDISEHAVNTARRNAELNNLQDICKFQAVNAFDV 277

Query: 299 --FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  +K FD V++D P              +T+  ++I K+    +++ L+G+  +K
Sbjct: 278 LKQWTREEKKFDTVILDPPA-------------FTKSRENIQKAITGYKEINLRGMKLLK 324

Query: 357 PGGIVVFSNCS 367
           PGG +V ++C+
Sbjct: 325 PGGFLVTASCT 335


>gi|322500514|emb|CBZ35591.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 588

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 9/202 (4%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL------HLYAEDIIEMDAF 299
           LD   +  G   ++ V+           ++ +      DR         +     + D  
Sbjct: 389 LDPSCSASGVMTRVDVALQHDHHEQQMPQQCKGKTQQADRRLSSLQGGRHGSHHGDADCN 448

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                +L D    +   S            ++   + + K A  QRKLL   +       
Sbjct: 449 AAEEGQLDDRDREETTNSG-AIDPEAQGNEFSMKEERVEKLARLQRKLLAHSLLSFDNCR 507

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            VV+S CS+ ++++EEVV++VL    +      L++    +              +    
Sbjct: 508 TVVYSTCSVHEEENEEVVRQVLDDERVKARGWRLSNIMPNTWKTRGKEREGEGHPL--HF 565

Query: 420 LEKIDGVSSGMDGFFAVALRRL 441
             + D  +   +GF+     R+
Sbjct: 566 TIRCDPATDATNGFYVARFDRV 587


>gi|257126675|ref|YP_003164789.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b]
 gi|257050614|gb|ACV39798.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b]
          Length = 138

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFL 60
           +    R     LL        ++   ++    +   +   + D  +  V  I+       
Sbjct: 2   TRREIREEIFKLLFEHELIDNNIEKRINDVINEENLKKNDEIDFLRSYVTEIIEN---EN 58

Query: 61  PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118
             I+ + + +   +  R     + LL++S  +I   ++     ++  +E AK+   N 
Sbjct: 59  ILIEKIKNILDGWTYERLGTIEKVLLKISFYEITIKNIGYEIAINEVLEIAKKYSYND 116


>gi|291166741|gb|EFE28787.1| transcription antitermination factor NusB [Filifactor alocis ATCC
           35896]
          Length = 142

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 8/116 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +  LL  +  K+      L                   V+ ++ +       I   +
Sbjct: 7   REKAFKLLYEMGIKKEEEIEFLQPYLMREGLME------GYVKDVLTLYFSHRDDIMDKI 60

Query: 68  DFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
                   + R       +L+++V +++Y  D+     ++ AV  +K+      + 
Sbjct: 61  QKSSKRWDVSRMIKLDLTILKLAVTEMMYYDDIPVAVAINEAVSLSKKYSGEDSYK 116


>gi|123967545|ref|YP_001008403.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. AS9601]
 gi|123197655|gb|ABM69296.1| Antitermination protein NusB [Prochlorococcus marinus str. AS9601]
          Length = 208

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + I N  +  L  ID+ +D V+    L R     + +LR++   I +L+       D AV
Sbjct: 122 QRICN-IINNLKSIDSDIDQVMDGWRLKRLPRIDRDILRLAYVDINFLNTPVAVACDEAV 180

Query: 109 EQAKRDKENRHFAKLVNSILRR 130
             A +  + +     +N +LRR
Sbjct: 181 NLANKYSDLKGRK-FINGVLRR 201


>gi|261418850|ref|YP_003252532.1| hypothetical protein GYMC61_1409 [Geobacillus sp. Y412MC61]
 gi|319765667|ref|YP_004131168.1| hypothetical protein GYMC52_0530 [Geobacillus sp. Y412MC52]
 gi|261375307|gb|ACX78050.1| protein of unknown function Met10 [Geobacillus sp. Y412MC61]
 gi|317110533|gb|ADU93025.1| Conserved hypothetical protein CHP00095 [Geobacillus sp. Y412MC52]
          Length = 394

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           +VLD     G       + GAK  TA+D+S+  +E  + N         + +  +AFDY 
Sbjct: 220 TVLDCFTHTGSFMLNACLYGAKHATAVDISEHAIETAKRNAALNGFTNVEFVVANAFDYL 279

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    + K+    + + L G+  VK 
Sbjct: 280 RESVRAGKQWDVVIIDPPA-------------FAKSAHAVPKALRGYKDINLNGLKLVKD 326

Query: 358 GGIVVFSNCSLD 369
           GG  V S+CS  
Sbjct: 327 GGFFVTSSCSYH 338


>gi|42524664|ref|NP_970044.1| hypothetical protein Bd3292 [Bdellovibrio bacteriovorus HD100]
 gi|39576874|emb|CAE78103.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 434

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 17/147 (11%)

Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV------SGAKVTALDVSKRRLEKLRCNLDRLH 287
                    + VLDLC   G  + Q+           +V+  D+SK  L   + N +R  
Sbjct: 251 WAKTQQPRKIRVLDLCCYVGHWSTQITRALKSLGFEVEVSLADISKTALAFAKKNAEREG 310

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
                + EMD             L   P +    +   P   + +   DI        K+
Sbjct: 311 AE-VIVHEMDVS---------EGLAALPSTHYDIVIADPPA-FIKSKKDIPIGKHAYLKM 359

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSE 374
                  VK  G V   +CS   ++ E
Sbjct: 360 NTHAFRLVKKNGFVASCSCSGLLEEEE 386


>gi|146309213|ref|YP_001189678.1| SAM-dependent methyltransferase [Pseudomonas mendocina ymp]
 gi|145577414|gb|ABP86946.1| SAM-dependent methyltransferase [Pseudomonas mendocina ymp]
          Length = 399

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH-LYAEDIIEMDAFD- 300
            VLDL +  GG   Q    GA      D S   L+ +  N            +E D F  
Sbjct: 224 RVLDLFSYIGGWGVQAAAFGASEVFCVDASGFALDGVERNATLNGFAEKITCVEGDVFAA 283

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD V+ D P              + +   DI       R+L    +  + 
Sbjct: 284 LRELKSAEERFDVVIADPPA-------------FIKRKKDIKNGEAAYRRLNEIAMRLLN 330

Query: 357 PGGIVVFSNCSLDKQD-SEEVV----QKVLRSSPIPVELVPLNSAYWKSIDMAMA-LSPE 410
             GI+V ++CS+  ++ + + +     + L  +   +E       +     +A       
Sbjct: 331 KDGILVSASCSMHLEEDNLQNILLTSARHLDRNIQLLERGAQGPDHPVHPAIAETRYIKS 390

Query: 411 GWIRITPD 418
             +R+ P+
Sbjct: 391 LTVRLLPN 398


>gi|291295341|ref|YP_003506739.1| SAM-dependent methyltransferase [Meiothermus ruber DSM 1279]
 gi|290470300|gb|ADD27719.1| SAM-dependent methyltransferase [Meiothermus ruber DSM 1279]
          Length = 384

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY---- 301
           LD+ +  G     L  +  +VTA+D S   L++ R N     L      E +AF++    
Sbjct: 216 LDVFSYHGSFALHLAQNFKQVTAVDSSAAALQRARENAQANGLANIAFREANAFEFLREE 275

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              K  +D +++D P              + +   D+ ++    +++ L+ +  +  GGI
Sbjct: 276 ERRKARYDLIVLDPPA-------------FAKGKRDLDRAYAAYKEINLRAMKLLPSGGI 322

Query: 361 VVFSNCSLDKQD 372
           +  ++CS    +
Sbjct: 323 LATASCSHHLSE 334


>gi|313214868|emb|CBY41100.1| unnamed protein product [Oikopleura dioica]
          Length = 416

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 19/139 (13%)

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +   D V ++   S       H  +               Q+  L + +   +PGG + +
Sbjct: 290 ESTNDRVSMNEDSSLNIFHPTHTHIR--------QSMPISQKNQLKKALQLCRPGGHITY 341

Query: 364 SNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            + SL    +E V+Q  ++       I V  VPL+   +   ++           + PDM
Sbjct: 342 VSNSLSHLQNEYVLQAAVKEVYIEHSITVRSVPLHFIPFCLPELNFYTESRLGQMVVPDM 401

Query: 420 LEKIDGVSSGMDGFFAVAL 438
            +            +   L
Sbjct: 402 GKNFGPK-------YVCKL 413


>gi|229495644|ref|ZP_04389373.1| NusB family protein [Porphyromonas endodontalis ATCC 35406]
 gi|229317414|gb|EEN83318.1| NusB family protein [Porphyromonas endodontalis ATCC 35406]
          Length = 348

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D  L   ++  T+        +++  L +  + R       +L++++A++L +  + 
Sbjct: 245 DEEDTHLAAELLRTTIVHEEEYREIINKNLRNWDMDRVTDVDMIILQMALAELLSFPTIP 304

Query: 100 DYAVVDLAVEQAKRDKENRH 119
               ++  +E AK       
Sbjct: 305 TTVTLNEYIELAKIYSTAES 324


>gi|297531187|ref|YP_003672462.1| hypothetical protein GC56T3_2944 [Geobacillus sp. C56-T3]
 gi|297254439|gb|ADI27885.1| Protein of unknown function methylase putative [Geobacillus sp.
           C56-T3]
          Length = 394

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
           +VLD     G       + GAK  TA+D+S+  +E  + N         + +  +AFDY 
Sbjct: 220 TVLDCFTHTGSFMLNACLYGAKHATAVDISEHAIETAKRNAALNGFTNVEFVVANAFDYL 279

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    + K+    + + L G+  VK 
Sbjct: 280 RESVRAGKQWDVVIIDPPA-------------FAKSAHAVPKALRGYKDINLNGLKLVKD 326

Query: 358 GGIVVFSNCSLD 369
           GG  V S+CS  
Sbjct: 327 GGFFVTSSCSYH 338


>gi|327539611|gb|EGF26219.1| SAM-dependent methyltransferase [Rhodopirellula baltica WH47]
          Length = 453

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 125/398 (31%), Gaps = 75/398 (18%)

Query: 9   LVSSHLLSCVM-----RKRISLTCLLDLEYGDSAFRLLSQRDQIL--VRAIVNVTLRFLP 61
            ++   L  V          SL+   +    D         D+ L     I+        
Sbjct: 37  ALAHATLREVTPEAPSDDGQSLSADTNAAETDQPAAESDPADRQLPACGEII-------D 89

Query: 62  RIDA---VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA---KRDK 115
            +D     +   LI+   R        LR+ +      +  D ++    +EQA   +R  
Sbjct: 90  LLDYDGNWIARGLINPASR--------LRIRLYAFSSEEQIDDSMWAERIEQAVARRRLT 141

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
              +       I     R    ++ R A    I       +       R +  + A    
Sbjct: 142 GPANPQGGERLIFSESDRMSGLIVDRYADCLSIQITGGALIPRTETLIREVTAAAARHQT 201

Query: 176 LYIDLTVKFDIETWAHK---------------LNAVMLPTGGIRLKELPESI-----VSL 215
               + V+ D  T  H+               L++    T   +   L  +I        
Sbjct: 202 PCQKVLVRMDDATVKHEGVSEETLAELQSLTTLDSEADSTVWYQHNGLEMAIDLQDGQKT 261

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKR 274
            G+ +       A++ +  +         VLD+C   GG       +GAK   A+D S+R
Sbjct: 262 GGYLDQQLNHAAAASYMADR--------RVLDICTYTGGFALAAARAGAKEVVAVDSSER 313

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----LFDAVLVDAPCSSTGTIRRHPDVL 329
            L+  + N +R  L      + D FD   ++      FDA+++D P              
Sbjct: 314 ALDIAKRNAERNQLTNVRFDQGDCFDDLKERRERGEQFDAIILDPP-------------R 360

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           +    +    +     +L    +  + PGGI+V  +CS
Sbjct: 361 FAGSRNQTNAALRAYTRLNASAVDLLPPGGILVTCSCS 398


>gi|313608940|gb|EFR84692.1| transcription antitermination factor NusB [Listeria monocytogenes
          FSL F2-208]
          Length = 57

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 1  MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
          MK    AR  +   L  +    +SL   +     D     + +        +V   +   
Sbjct: 1  MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51

Query: 61 PRIDAV 66
            IDA+
Sbjct: 52 ADIDAI 57


>gi|302846246|ref|XP_002954660.1| hypothetical protein VOLCADRAFT_95449 [Volvox carteri f.
           nagariensis]
 gi|300260079|gb|EFJ44301.1| hypothetical protein VOLCADRAFT_95449 [Volvox carteri f.
           nagariensis]
          Length = 529

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 306 LFDAVLVDAPCSSTGTIR-RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364
           ++D +LVDAPCS  G ++ + P      D   + +    QR+LLL+G+  ++ GG +V+S
Sbjct: 350 VYDRILVDAPCSGLGRLQLQRPSSYSRWDEQHVARHPERQRQLLLRGVRLLRRGGSLVYS 409

Query: 365 NCSLDKQDSEE 375
            C++D +++E 
Sbjct: 410 TCTIDPRENEA 420


>gi|255607375|ref|XP_002538718.1| methyltransferase, putative [Ricinus communis]
 gi|223510766|gb|EEF23665.1| methyltransferase, putative [Ricinus communis]
          Length = 206

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 10/152 (6%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277
           +A       +  +             S+L+L A  G  T      G + T  D+    + 
Sbjct: 10  YAPRAGSSTEFVSRNWWAAHLDEARGSLLELGAGSGALTLLAARQGWRATGADIDGAAVS 69

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
             + N  R  + AE   + D F+    + FD +L + P      ++ H   L        
Sbjct: 70  SAQENAARNGIEAEF-RQSDLFEAFKGERFDVILFNQPYFHKPDVQNHERAL-------A 121

Query: 338 VKSACFQRKLLLQGISFVKPGGIVV--FSNCS 367
             +    +++L +    + PGG +V  +SNCS
Sbjct: 122 DLNGRLTQRMLDEAARHLNPGGRLVFTYSNCS 153


>gi|146092125|ref|XP_001470213.1| hypothetical protein [Leishmania infantum]
 gi|134085007|emb|CAM69407.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 589

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 8/202 (3%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL------HLYAEDIIEMDAF 299
           LD   +  G   ++ V+           ++ +      DR         +  +  + D  
Sbjct: 389 LDPSCSASGVMTRVDVALQHYHHEQQMPQQCKGKTQQADRRLSSLQGGRHGSNHGDADRN 448

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               +   D    +   +S           ++   + + K A  QRKLL   +       
Sbjct: 449 AAEEEGQLDDRDREETTNSGAIDPEAQGNEFSMKEERVEKLARLQRKLLAHSLLSFDDCR 508

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419
            VV+S CS+ ++++EEVV++VL    +      L++    +              +    
Sbjct: 509 TVVYSTCSVHEEENEEVVRQVLDDERVKARGWRLSNIMPNTWKTRGMEREGEGHPL--HF 566

Query: 420 LEKIDGVSSGMDGFFAVALRRL 441
             + D  +   +GF+     R+
Sbjct: 567 TIRCDPATDATNGFYVARFDRV 588


>gi|126695346|ref|YP_001090232.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542389|gb|ABO16631.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9301]
          Length = 205

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + I N  +  L  ID+ +D  +    L R     + +LR++   I +L+       D AV
Sbjct: 122 QRICN-IINNLKSIDSDIDQAMDGWRLKRLPRIDRDILRLAYVDINFLNTPVAVACDEAV 180

Query: 109 EQAKRDKENRHFAKLVNSILRR 130
             A +  + +     +N +LRR
Sbjct: 181 NLANKYSDLQGRK-FINGVLRR 201


>gi|194246432|ref|YP_002004071.1| Transcription termination factor [Candidatus Phytoplasma mali]
 gi|194246854|ref|YP_002004495.1| Transcription termination factor [Candidatus Phytoplasma mali]
 gi|193806789|emb|CAP18216.1| Transcription termination factor [Candidatus Phytoplasma mali]
 gi|193807213|emb|CAP18656.1| Transcription termination factor [Candidatus Phytoplasma mali]
          Length = 142

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI--LVRAIVNVTLR 58
           MK     R+    LL              D    D  F   + + Q     + I    + 
Sbjct: 1   MKKPSLIRIEVLILLYQY-----------DFYLQDLKFLNYTTKPQSLVFFQKI----IP 45

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
            +  ID ++   L +  L R     Q +LR++  ++L   +    ++D A+E  KR 
Sbjct: 46  KITLIDEIIQKNLYNYQLKRLNKVDQAILRLATFELLENKIIAPIIIDEALELTKRY 102


>gi|94971793|ref|YP_593841.1| SAM-dependent methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553843|gb|ABF43767.1| SAM-dependent methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 405

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
             LD+    GG    L  +  +VT +D+S+  LE    N           +     ++  
Sbjct: 236 DALDVFTYQGGFALHLYQNCRRVTGVDMSRPALEVAEENA---------TLNEYNLEWIE 286

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
              FD +   +               + +   +   +    ++L L+ +  ++ GG ++ 
Sbjct: 287 ANAFDYLKDQSVGGRAYDTIVLDPPAFAKTAKNFDTAIRGYKELNLRALKMLRAGGTLIS 346

Query: 364 SNCSLDKQD 372
            +CS    +
Sbjct: 347 CSCSFHVSE 355


>gi|317968466|ref|ZP_07969856.1| transcription antitermination protein NusB [Synechococcus sp.
           CB0205]
          Length = 208

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 21  KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKK 79
            R+S +  L      S    +    +          L     +D  LD V+    L R  
Sbjct: 95  NRLSASLELPRLLMLSDQEEI----RRGAIERARAVLSGRADLDQRLDAVMEGWRLTRLP 150

Query: 80  YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
              + +LR++   I   +       + AVE A R  + +   +++N +LRR + 
Sbjct: 151 RIDRDILRLAAVDIEQFNTPAPVACNEAVELANRYSDEQGR-RMINGVLRRFTN 203


>gi|295105451|emb|CBL02995.1| SAM-dependent methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 409

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 243 LSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            +VLD     G         GA +VTA D+S   +   + N +R  L   D +  D F  
Sbjct: 237 HTVLDCFTHTGSFALNAAKGGAARVTAADISAEAIAMAKRNAERNGLNNMDFLCEDTFAL 296

Query: 302 CP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            P        +D +++D P              +T+    +  +    +++  + +  + 
Sbjct: 297 LPRLEKEGHPYDFIILDPPA-------------FTKARRTVENAMRGYKEINYRAMKLLP 343

Query: 357 PGGIVVFSNCSLDKQD 372
            GG +  ++CS    +
Sbjct: 344 RGGYLATASCSHFATE 359


>gi|78778394|ref|YP_396506.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9312]
 gi|78711893|gb|ABB49070.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
           9312]
          Length = 208

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 56  TLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
           T+  L  ID+ +D  +    L R     + +LR++   I +L+       D AV  A + 
Sbjct: 127 TINNLTIIDSDIDQAMDGWKLKRLPRIDRDILRLAYVDINFLNTPVAVACDEAVNLANKY 186

Query: 115 KENRHFA 121
            + +   
Sbjct: 187 SDMQGRK 193


>gi|325846649|ref|ZP_08169564.1| transcription antitermination factor NusB [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481407|gb|EGC84448.1| transcription antitermination factor NusB [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 129

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           D +++ + +SSL R     + +L +SV ++ YLD+     ++ AV  +K+   +  + 
Sbjct: 58  DILINQIGLSSLKRLAKVDRAILFLSVNEMKYLDIPVSVSINEAVNISKKYSTSDGYK 115


>gi|212696078|ref|ZP_03304206.1| hypothetical protein ANHYDRO_00614 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676707|gb|EEB36314.1| hypothetical protein ANHYDRO_00614 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 129

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 64  DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           D +++ + +SSL R     + +L +SV ++ YLD+     ++ AV  +K+   +  + 
Sbjct: 58  DILINQIGLSSLKRLAKVDRAILFLSVNEMKYLDIPVSVSINEAVNISKKYSTSDGYK 115


>gi|330505434|ref|YP_004382303.1| SAM-dependent methyltransferase [Pseudomonas mendocina NK-01]
 gi|328919720|gb|AEB60551.1| SAM-dependent methyltransferase [Pseudomonas mendocina NK-01]
          Length = 399

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH-LYAEDIIEMDAFD- 300
            VLDL +  GG   Q    GA      D S   L+ +  N +          +E D F  
Sbjct: 224 RVLDLFSYIGGWGVQAAAFGASEVFCVDASGFALDGVERNANLNGFAEKVTCVEGDVFAA 283

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD V+ D P              + +   DI       R+L    +  + 
Sbjct: 284 LRELKSAEERFDVVIADPPA-------------FIKRKKDIKNGEAAYRRLNETAMRLLN 330

Query: 357 PGGIVVFSNCSLDKQD-SEEVV----QKVLRSSPIPVELVPLNSAYWKSIDMAMA-LSPE 410
             GI+V ++CS+   + + + +     + L  +   +E       +     +        
Sbjct: 331 KDGILVSASCSMHLDEDNLQNILLTSARHLDRNIQLLERGAQGPDHPVHPAINETRYIKS 390

Query: 411 GWIRITPD 418
             +R+ P+
Sbjct: 391 LTVRLLPN 398


>gi|237756907|ref|ZP_04585380.1| transcription termination factor [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690928|gb|EEP60063.1| transcription termination factor [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 169

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 6   NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL----RFLP 61
            AR +S  +L     ++  L  +L+       F          ++  V   +        
Sbjct: 19  AARDLSMRVLFAYDFRKEDLFNVLEEFLNTKKFPSE-------IKEYVLKVINFYNENSQ 71

Query: 62  RIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL 94
            +D ++   L +    R  Y  + +LR+ V+++L
Sbjct: 72  EVDDIIKSHLKNWRFERIGYIERAVLRLGVSELL 105


>gi|168011444|ref|XP_001758413.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690448|gb|EDQ76815.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 207

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
             ++  L   +    SL              + +     L R +V  T     + +A+L 
Sbjct: 84  EATAMALEEALDAEASLEA---SVLTAPPPLVYNSFALRLARTLVKETAYRWLQQEAILM 140

Query: 69  FV--LISSLPRKKYSLQ-QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
            +  L   +  K   LQ  +L++++A+I   DV    VV+ AVE AKR   +    +++N
Sbjct: 141 EIIPLKWKVQPKAALLQICVLQMALAEIEATDVPPRVVVNEAVELAKRFC-DLAAPRIIN 199

Query: 126 SILRRV 131
             L   
Sbjct: 200 GCLGSY 205


>gi|46447257|ref|YP_008622.1| putative transcription termination factor, nusB [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400898|emb|CAF24347.1| putative transcription termination factor, nusB [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 154

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 40  LLSQRDQILVRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LD 97
            +S+++  L +  V   +  L  ID+ +  V L     R +   + +LR+ V ++ +  D
Sbjct: 10  SISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLGVFELFFETD 69

Query: 98  VADYAVVDLAVEQAKRDKENRHFA 121
           +    V+  A+  +++       +
Sbjct: 70  IPQKVVIAEAIRLSRKFSTPESAS 93


>gi|167756946|ref|ZP_02429073.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
 gi|237734649|ref|ZP_04565130.1| predicted protein [Mollicutes bacterium D7]
 gi|167703121|gb|EDS17700.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
 gi|229382469|gb|EEO32560.1| predicted protein [Coprobacillus sp. D7]
          Length = 134

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 1   MKSGMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVN 54
           MK       R  +       +    +    +            +Q D       + +I +
Sbjct: 1   MKKYRKKIIREKAVIATYQKLLVDTNEDE-IREYLNSDKDLSSNQDDFDYCFMFIISIAS 59

Query: 55  VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
              R+   +   L      +L R       +L V   ++L  + +   +++ AVE +K+ 
Sbjct: 60  NIERYKAEVAKYLKP--GWTLDRLSKMELAILLVGCYELLETEQSKEVIINEAVELSKKY 117

Query: 115 KENRHFAKLVNSILRR 130
             +    K +N +L R
Sbjct: 118 C-DSDAYKFINGLLNR 132


>gi|160945353|ref|ZP_02092579.1| hypothetical protein FAEPRAM212_02873 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443084|gb|EDP20089.1| hypothetical protein FAEPRAM212_02873 [Faecalibacterium prausnitzii
           M21/2]
          Length = 409

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 243 LSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            +VLD     G         GA +VTA D+S   +   + N +R  L   D +  D F  
Sbjct: 237 HTVLDCFTHTGSFALNAAKGGAARVTAADISAEAIAMAKRNAERNGLDNMDFLCEDTFAL 296

Query: 302 CP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            P        +D +++D P              +T+    +  +    +++  + +  + 
Sbjct: 297 LPRLEKEGSPYDFIILDPPA-------------FTKARRTVENAMRGYKEINYRAMKLLP 343

Query: 357 PGGIVVFSNCSLDKQD 372
            GG +  ++CS    +
Sbjct: 344 RGGYLATASCSHFATE 359


>gi|291520794|emb|CBK79087.1| transcription antitermination factor NusB [Coprococcus catus GD/7]
          Length = 131

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 56  TLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113
            +  +P +D +++         R       ++R++V ++ Y  D+     ++ AVE AKR
Sbjct: 54  IMAMIPELDTMVNEHSVGWQTERMGKVDLTIIRLAVYEMKYDDDIPVSVAINEAVELAKR 113

Query: 114 DKENRHFAKLVNSILRRV 131
              + +    +N +L ++
Sbjct: 114 Y-GSENSPAFINGVLAKM 130


>gi|254526109|ref|ZP_05138161.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
           9202]
 gi|221537533|gb|EEE39986.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
           9202]
          Length = 208

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + I N  +  L  ID+ +D V+    L R     + +LR++   I +L+       D AV
Sbjct: 122 QRICN-IINNLKSIDSDIDQVMDGWRLKRLPRIDRDILRLAYVDINFLNTPIAVACDEAV 180

Query: 109 EQAKRDKENRHFAKLVNSILRR 130
             A +  + +   + +N +LRR
Sbjct: 181 NLANKYSDLQGR-RFINGVLRR 201


>gi|157412347|ref|YP_001483213.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9215]
 gi|157386922|gb|ABV49627.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9215]
          Length = 208

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + I N  +  L  ID+ +D V+    L R     + +LR++   I +L+       D AV
Sbjct: 122 QRICN-IINNLKSIDSDIDQVMDGWRLKRLPRIDRDILRLAYVDINFLNTPIAVACDEAV 180

Query: 109 EQAKRDKENRHFAKLVNSILRR 130
             A +  + +   + +N +LRR
Sbjct: 181 NLANKYSDLQGR-RFINGVLRR 201


>gi|258542345|ref|YP_003187778.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633423|dbj|BAH99398.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636482|dbj|BAI02451.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639535|dbj|BAI05497.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642591|dbj|BAI08546.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645646|dbj|BAI11594.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648699|dbj|BAI14640.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651752|dbj|BAI17686.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654743|dbj|BAI20670.1| transcription antitermination factor NusB [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 174

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 13/161 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS----------QRDQILVRA 51
           +    AR+ +   L  + +       +++          L           + D  L   
Sbjct: 15  RPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFGTTLDGASYEDGCIPEADTQLFSH 74

Query: 52  IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109
           IV +      ++   ++  L     + R    L+ LL  + A+    D     +++  ++
Sbjct: 75  IVRLVTSMRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATEGDAPAPVLINEYMD 134

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
            A          +LVN +L  + +            +  P+
Sbjct: 135 VAHAFFSGDE-PRLVNGVLDTLFKRLAAERNHDTEQTQQPD 174


>gi|311748704|ref|ZP_07722489.1| antitermination factor [Algoriphagus sp. PR1]
 gi|126577236|gb|EAZ81484.1| antitermination factor [Algoriphagus sp. PR1]
          Length = 394

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 7   ARLVSSHLL---SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
            R ++S +L   + V     +    L     +       + D+   + I N TL      
Sbjct: 254 VRSLASKILKNAAQVDGSETNP---LPEIAMNW------EEDKEFFQNIFNFTLENEAES 304

Query: 64  DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
            A++     +  + R  ++ + ++ +++A++  +  +     ++  ++ +K     + 
Sbjct: 305 KALISQKTKNWDIDRLAFTDKIIISMALAEMKNFPSIPVKVSINEYIDISKTYSTPKS 362


>gi|330995945|ref|ZP_08319840.1| transcription antitermination factor NusB [Paraprevotella
           xylaniphila YIT 11841]
 gi|329574284|gb|EGG55859.1| transcription antitermination factor NusB [Paraprevotella
           xylaniphila YIT 11841]
          Length = 310

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +      + +   LL             + D+     +   TL        ++   
Sbjct: 182 VLKTIKRFDEAKGAGQELLPEFK--------DEEDREFAHRLFRNTLLNAEYYRKLISDN 233

Query: 71  LISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +    R       ++++++A+IL + ++     ++  V+ AK     R  A
Sbjct: 234 TKNWEFNRIALMDLLIMQIALAEILTFPNIPLNVSLNEYVDIAKIYSTPRSGA 286


>gi|257439919|ref|ZP_05615674.1| methyltransferase [Faecalibacterium prausnitzii A2-165]
 gi|257197647|gb|EEU95931.1| methyltransferase [Faecalibacterium prausnitzii A2-165]
          Length = 409

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 19/136 (13%)

Query: 243 LSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            +VLD     G         GA +VTA D+S   +   + N  R +L   D +  D F+ 
Sbjct: 237 HTVLDCFTHTGSFALNAAKGGAARVTAADISAEAIAMAQRNAQRNNLTNMDFLCEDTFEL 296

Query: 302 CP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            P        +D +++D P              +T+    +  +    +++  + +  + 
Sbjct: 297 LPRLEKEGHPYDFIILDPPA-------------FTKARRTVENAMRGYKEINYRAMKLLP 343

Query: 357 PGGIVVFSNCSLDKQD 372
            GG +  ++CS    +
Sbjct: 344 RGGYLATASCSHFATE 359


>gi|283455658|ref|YP_003360222.1| N utilization substance protein [Bifidobacterium dentium Bd1]
 gi|283102292|gb|ADB09398.1| nusB N utilization substance protein [Bifidobacterium dentium Bd1]
          Length = 86

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           +LD       + R     + +LR++V +I++  DV +   +D A+  AK   ++   A
Sbjct: 1   MLDEHSTGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAKTLCDDDSPA 58


>gi|194476880|ref|YP_002049059.1| transcription antitermination protein NusB [Paulinella
           chromatophora]
 gi|171191887|gb|ACB42849.1| transcription antitermination protein NusB [Paulinella
           chromatophora]
          Length = 203

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 15  LSCVMRKR-ISLTCLLDLEYGDSAFRLLS-QRDQILVR----AIVNVTLRFLPRIDAVLD 68
           +   ++         L+          L    D+  VR      V   L    +ID  LD
Sbjct: 77  IRQYLKSGLERAEQALNNLSASLELPYLLMLADRASVRQDALERVRFVLSNREKIDQRLD 136

Query: 69  FVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
            V+ +  L R     + +LR++   +  L        + AVE A R  + +   +++N I
Sbjct: 137 AVMENWRLIRLPRIDRDILRLASVDLDRLGTPAAVACNEAVEMANRYSDEQGR-RMINGI 195

Query: 128 LRR 130
           LRR
Sbjct: 196 LRR 198


>gi|139436934|ref|ZP_01771094.1| Hypothetical protein COLAER_00067 [Collinsella aerofaciens ATCC
           25986]
 gi|133776581|gb|EBA40401.1| Hypothetical protein COLAER_00067 [Collinsella aerofaciens ATCC
           25986]
          Length = 118

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 77  RKKYSLQQLLRVSVAQILYL---DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           R   + + LLR++V ++ +L   +V+D  V++ AVE AK        A  VN +L +
Sbjct: 2   RMPGADRNLLRIAVYEMRFLTDEEVSDAIVINEAVELAKAY-GTDQSASFVNGVLGK 57


>gi|332877528|ref|ZP_08445275.1| transcription antitermination factor NusB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684634|gb|EGJ57484.1| transcription antitermination factor NusB [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 310

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+     +   TL        ++     +    R       ++++++A+IL + ++ 
Sbjct: 205 DEEDREFAHRLFRNTLLNAEYYRKLISDNTKNWEFNRIALMDLLIMQIALAEILTFPNIP 264

Query: 100 DYAVVDLAVEQAKRDKENRHFA 121
               ++  V+ AK     R  A
Sbjct: 265 LNVSLNEYVDIAKIYSTPRSGA 286


>gi|313680356|ref|YP_004058095.1| sam-dependent methyltransferase [Oceanithermus profundus DSM 14977]
 gi|313153071|gb|ADR36922.1| SAM-dependent methyltransferase [Oceanithermus profundus DSM 14977]
          Length = 393

 Score = 46.0 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-- 299
               LD+ A  G     +    A+V A+D S   LE  R N     L      E +AF  
Sbjct: 220 YARALDVFAYQGLFALHMARHVAEVEAVDSSAAALEAARENAALNGLENLRFTEANAFDL 279

Query: 300 ---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + +D V++D P              +     D  ++    +++ L+ +  + 
Sbjct: 280 LRERQRAGERYDVVVLDPPA-------------FAARKADRERALAAYKEVNLRALKLLA 326

Query: 357 PGGIVVFSNCSLDKQD 372
           PGG++V ++CS    +
Sbjct: 327 PGGLLVTASCSHHVSE 342


>gi|294155614|ref|YP_003559998.1| transcription anti-termination factor NusB [Mycoplasma crocodyli
           MP145]
 gi|291600060|gb|ADE19556.1| transcription anti-termination factor NusB [Mycoplasma crocodyli
           MP145]
          Length = 150

 Score = 46.0 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           KS    R     +L         +   +  +     F  LS      +  I         
Sbjct: 5   KSRRQNREEVIQVLYRFELFNEKIDAAIAFQ----EFSFLSNEQVKFIEKI----DNNYD 56

Query: 62  RIDAVLDFVLISSLP--RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE--- 116
            + +++   L  +    R    ++ +L  + A++    +    V++ AVE  K       
Sbjct: 57  FLKSIIAKFLNQNWAWLRIPPLIKAILINASAELF--TIPPRIVINEAVEITKDYFCMTP 114

Query: 117 -NRHFAKLVNSILRRVSR 133
            +  + K VN+IL+ V +
Sbjct: 115 DDDKYYKFVNAILQNVYK 132


>gi|206890120|ref|YP_002248963.1| methyltransferase small domain family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742058|gb|ACI21115.1| methyltransferase small domain family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 386

 Score = 46.0 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305
           LDL    G  +  L   GA +T +D S++ +E  + N     L        D   +    
Sbjct: 217 LDLFCYVGAWSIHLAKRGANITGIDSSEKAIEIAKQNAM---LNNVQ----DKCRFIKAD 269

Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365
           +FD +  +A               + +   +   +      L    +  ++  GI+  S+
Sbjct: 270 VFDYLRWEAKKGKKYDFIVVDPPAFVKSRQEKKDAIEGYVNLNRMALKLLRKNGILATSS 329

Query: 366 CSLDKQDSE--EVVQK 379
           CS    +++  E+++K
Sbjct: 330 CSQHISETDFLEIIKK 345


>gi|146284322|ref|YP_001174475.1| hypothetical protein PST_4010 [Pseudomonas stutzeri A1501]
 gi|145572527|gb|ABP81633.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 398

 Score = 46.0 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 26/188 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +         E 
Sbjct: 223 RVLDLFSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGVAEKMTCVEGDAFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD V+ D P              + +   D+       R+L    +  + 
Sbjct: 283 MKELKNAEERFDVVITDPPA-------------FIKRKKDLKNGEAAYRRLNETAMRLLN 329

Query: 357 PGGIVVFSNCSLDKQDSEEV-----VQKVLRSSPIPVELVPLNSAYWKSIDMAMA-LSPE 410
             GI+V ++CS+  ++           + L  +   +E       +     +        
Sbjct: 330 KDGILVSASCSMHLEEDHLQNILLGSARHLDRNIQLLERGAQGPDHPVHPAIPETRYIKS 389

Query: 411 GWIRITPD 418
              RI P+
Sbjct: 390 LTCRILPN 397


>gi|326498989|dbj|BAK05985.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 425

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 42/153 (27%), Gaps = 52/153 (33%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIV------- 338
            L    ++            +D VLVDA C+  G+I+       W   T D         
Sbjct: 253 GLQKRYVLCPSTNAAACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLNVERT 312

Query: 339 -KSACFQRKLLLQGISFVKPGGIVVFSNC------------------------------- 366
                 Q  LL  G   +K GG +V+S C                               
Sbjct: 313 GNLLHLQLGLLTNGFKLLKTGGSLVYSTCRCVIASHANLILKLRLSNLAFTVLRILVQFS 372

Query: 367 ------------SLDKQDSEEVVQKVLRSSPIP 387
                       SL    +E VVQ+ L   P  
Sbjct: 373 SWRRMANNLSWNSLTVAQNENVVQQFLSKHPSA 405


>gi|284044527|ref|YP_003394867.1| NusB antitermination factor [Conexibacter woesei DSM 14684]
 gi|283948748|gb|ADB51492.1| NusB antitermination factor [Conexibacter woesei DSM 14684]
          Length = 133

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 21/122 (17%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI- 72
            L         L   L  +  +    L                       DA++      
Sbjct: 3   ALYQHDLTGRPLEQTLPKDAANFTRALAQAALAR------------QAEFDALISRHAEG 50

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLD-------VADYAVVDLAVEQAKRDKENRHFAKLVN 125
            +L R     + +LRVS+ ++L+         +     +D A+E AK           VN
Sbjct: 51  WTLQRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKAYCG-ADAPGFVN 109

Query: 126 SI 127
            +
Sbjct: 110 GV 111


>gi|303290222|ref|XP_003064398.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453996|gb|EEH51303.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 384

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 17/180 (9%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            V+D+C   GG      + GA     +D S+  L+    N     +       +      
Sbjct: 208 KVMDVCCYTGGFAVNAALGGASDVTGVDSSRPALDVAAKNASLNGVTD----RIRWVKND 263

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             K  DA L +    +   I   P      +   + ++      +  + +  ++PGGI+V
Sbjct: 264 AFKHLDACLENGEAGTYDLIVLDPP-KLAPNVKSVARAVPKYVGMNQRAMKLLRPGGILV 322

Query: 363 FSNCS-------LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415
             +CS       L  +    +V    +S+   V ++       +   +        ++ +
Sbjct: 323 TCSCSGAVTQQKLLPE----IVAAAAQSAGRKVTMLGAPRGAGEDQPLDPFYPEGNYLTV 378


>gi|197294848|ref|YP_001799389.1| Transcription termination factor [Candidatus Phytoplasma
           australiense]
 gi|171854175|emb|CAM12169.1| Transcription termination factor [Candidatus Phytoplasma
           australiense]
          Length = 138

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 60  LPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK--E 116
           LP ID ++ + +    L R     + ++R++  ++L        ++D AVE  K+     
Sbjct: 50  LPFIDEIIINNLYNYKLNRLNKVDKAIIRLATFELLENKTPYALIIDEAVELTKQFCNLH 109

Query: 117 NRHFAKLVNSILRRVSRE 134
           N    K  N +L ++ ++
Sbjct: 110 NEKQHKFNNKLLDKIHKQ 127


>gi|313892389|ref|ZP_07825981.1| putative 23S rRNA m5C1962 methyltransferase [Dialister
           microaerophilus UPII 345-E]
 gi|313119248|gb|EFR42448.1| putative 23S rRNA m5C1962 methyltransferase [Dialister
           microaerophilus UPII 345-E]
          Length = 404

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301
           VLD     G        SGAK   A+D+S+  ++    + +   L    +++ D FDY  
Sbjct: 233 VLDCFTHTGAFALNAAKSGAKSVTAIDISQHAVDMATHHAEINELENMKVVKADVFDYLT 292

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 +  +D +++D P              +T+    +  +    +++  + +  +  
Sbjct: 293 EQDKNHEHKYDYIILDPPA-------------FTKSGSTVHSAFRGYKEINYRAMKLLPR 339

Query: 358 GGIVVFSNCS-LDKQD 372
           GG +   +CS   K++
Sbjct: 340 GGYLATCSCSHFMKEE 355


>gi|329121319|ref|ZP_08249945.1| methyltransferase [Dialister micraerophilus DSM 19965]
 gi|327469728|gb|EGF15194.1| methyltransferase [Dialister micraerophilus DSM 19965]
          Length = 404

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301
           VLD     G        SGAK   A+D+S+  ++    + +   L    +++ D FDY  
Sbjct: 233 VLDCFTHTGAFALNAAKSGAKSVTAIDISQHAVDMATHHAEINELENMKVLKADVFDYLT 292

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 +  +D +++D P              +T+    +  +    +++  + +  +  
Sbjct: 293 QQDKNHEHKYDYIILDPPA-------------FTKSGSTVHSAFRGYKEINYRAMKLLPR 339

Query: 358 GGIVVFSNCS-LDKQD 372
           GG +   +CS   K++
Sbjct: 340 GGYLATCSCSHFMKEE 355


>gi|288817382|ref|YP_003431729.1| SAM dependent methyl transferase [Hydrogenobacter thermophilus
           TK-6]
 gi|288786781|dbj|BAI68528.1| SAM dependent methyl transferase [Hydrogenobacter thermophilus
           TK-6]
 gi|308750989|gb|ADO44472.1| Methyltransferase type 11 [Hydrogenobacter thermophilus TK-6]
          Length = 391

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 19/137 (13%)

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
                  LDL    GG    +  +GA    A+D+S + LE  + N +   L     +E +
Sbjct: 215 VKPGYRCLDLFCHTGGFALNMRKAGAGEVLAVDISAQALEVAKRNAELNSLDNIVWMEEN 274

Query: 298 AFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
           AFD     +   ++FD VL+D P              + ++   +  +    ++L ++G+
Sbjct: 275 AFDFMRKLHKEGQVFDLVLMDPPS-------------FAKNRASVPNALRGYKELCVRGL 321

Query: 353 SFVKPGGIVVFSNCSLD 369
             VK GG +V  +CS  
Sbjct: 322 HVVKRGGYLVIYSCSFH 338


>gi|323706445|ref|ZP_08118007.1| hypothetical protein CHP00095 [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534230|gb|EGB24019.1| hypothetical protein CHP00095 [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 391

 Score = 45.7 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 20/133 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRC------NLDRLHLYAEDIIEM 296
            VLD  +  G  +   +  GAK    +D+S+  L+  +        LDR     E+  ++
Sbjct: 219 DVLDCFSHTGSFSVHALHYGAKSVETVDISEAALDMAKKNAALNGYLDRCRFTCENAFDL 278

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   K FD V++D P              +T+  + +  +    +++ L+ +  +K
Sbjct: 279 LKKYDEENKKFDVVILDPPA-------------FTKSKETVKDAIRGYKEINLRAMKILK 325

Query: 357 PGGIVVFSNCSLD 369
            GG ++  +CS  
Sbjct: 326 KGGFLITCSCSQH 338


>gi|315608439|ref|ZP_07883427.1| NusB family protein [Prevotella buccae ATCC 33574]
 gi|315249899|gb|EFU29900.1| NusB family protein [Prevotella buccae ATCC 33574]
          Length = 345

 Score = 45.7 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 11/122 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +        S   LL             + D+   R +   T+    +    +   
Sbjct: 181 VVKTIKRFDPANKSNQELLPEYK--------DEEDREFARKLFRATILNADQYQRYMSDA 232

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    ++++++A++L +  +     ++  V  AK           +N +L
Sbjct: 233 SRNWDFSRLAYMDVVIMQIAIAEMLTFPGIPVSVTINEYVNLAK-VYSTPRSGGYINGML 291

Query: 129 RR 130
             
Sbjct: 292 DN 293


>gi|288926808|ref|ZP_06420717.1| NusB family protein [Prevotella buccae D17]
 gi|288336437|gb|EFC74814.1| NusB family protein [Prevotella buccae D17]
          Length = 320

 Score = 45.7 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 11/122 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +        S   LL             + D+   R +   T+    +    +   
Sbjct: 156 VVKTIKRFDPANKSNQELLPEYK--------DEEDREFARKLFRATILNADQYQRYMSDA 207

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    ++++++A++L +  +     ++  V  AK           +N +L
Sbjct: 208 SRNWDFSRLAYMDVVIMQIAIAEMLTFPGIPVSVTINEYVNLAK-VYSTPRSGGYINGML 266

Query: 129 RR 130
             
Sbjct: 267 DN 268


>gi|332297731|ref|YP_004439653.1| protein of unknown function Met10 [Treponema brennaborense DSM
           12168]
 gi|332180834|gb|AEE16522.1| protein of unknown function Met10 [Treponema brennaborense DSM
           12168]
          Length = 429

 Score = 45.7 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 20/131 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDR----LHLYAEDIIEMD- 297
            VLD     G      +  G ++V ++D+S   +  +  N++R      + A      D 
Sbjct: 257 RVLDTFTHTGAFGLNAVAGGASEVVSVDISAEAVSLVESNIERNKAGHVMKAVCADVFDL 316

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD +++D P              + +    I K+    +++ L+ +  + 
Sbjct: 317 LKQYESEGRQFDLIILDPPA-------------FAKSAAKIEKAYGGYKEINLRAMKLLT 363

Query: 357 PGGIVVFSNCS 367
           PGGI+V  +CS
Sbjct: 364 PGGILVSCSCS 374


>gi|260892856|ref|YP_003238953.1| methyltransferase small [Ammonifex degensii KC4]
 gi|260864997|gb|ACX52103.1| methyltransferase small [Ammonifex degensii KC4]
          Length = 392

 Score = 45.7 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 20/137 (14%)

Query: 243 LSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFD 300
           + VLD     GG   A       +V A+DVS++ LE  R N     +       E + FD
Sbjct: 219 MRVLDCFCYTGGFAVAAAKGEAEEVVAVDVSEQALELARENAVLNGVEEKISWREANCFD 278

Query: 301 Y-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                    + FD V++D P              +T+  + +  +    +++ L+ +  +
Sbjct: 279 ELRRLEKAGEKFDLVILDPPA-------------FTKSKEALPSAMRGYKEINLRALKLL 325

Query: 356 KPGGIVVFSNCSLDKQD 372
           +PGG++   +CS    +
Sbjct: 326 RPGGLLFTCSCSYHLTE 342


>gi|319777409|ref|YP_004137060.1| transcription termination factor [Mycoplasma fermentans M64]
 gi|238810315|dbj|BAH70105.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038484|gb|ADV34683.1| Transcription termination factor [Mycoplasma fermentans M64]
          Length = 139

 Score = 45.7 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 21/142 (14%)

Query: 1   MKSGMNARLVSSHLLSCVM--RKRISLTCLLDLE--YGDSAFRLLSQRDQILVRAIVNVT 56
           M++    RL   ++L       ++I++  L D E    +  F  L +             
Sbjct: 1   MQNRRQFRLGIINVLYRYELMDQKINVNELFDSESNLSNEQFSHLEK------------I 48

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
            +        +   L    S  R    ++ +L     ++  + +    +++ +VE  K  
Sbjct: 49  AKNYDFYKKAVSQFLKEGWSWERISPLIRAILINGAHEL--MSIEPKIIINESVEITKYY 106

Query: 115 KEN-RHFAKLVNSILRRVSREK 135
            E+ ++F K+VN+IL +V +  
Sbjct: 107 FEDEKNFYKMVNAILEKVYKFF 128


>gi|115377525|ref|ZP_01464725.1| SAM-dependent methyltransferases [Stigmatella aurantiaca DW4/3-1]
 gi|310820069|ref|YP_003952427.1| hypothetical protein STAUR_2802 [Stigmatella aurantiaca DW4/3-1]
 gi|115365465|gb|EAU64500.1| SAM-dependent methyltransferases [Stigmatella aurantiaca DW4/3-1]
 gi|309393141|gb|ADO70600.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 394

 Score = 45.7 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-----AFD 300
           LDL +  GG    L  +   V A++   +   +++ N +R       +   +        
Sbjct: 226 LDLFSYHGGFALALSRTCDTVLAVEQDPKASGRIQANAERNGRTNVTVENANAFDVLRRF 285

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD V++D P  +             +  + +  +     +L L+ +  +KP G+
Sbjct: 286 ADTGRRFDTVVLDPPGLA-------------KRREGLATALRAYHELNLRALKCLKPEGL 332

Query: 361 VVFSNCS 367
           +V  +CS
Sbjct: 333 LVTCSCS 339


>gi|255692806|ref|ZP_05416481.1| NusB family protein [Bacteroides finegoldii DSM 17565]
 gi|260621435|gb|EEX44306.1| NusB family protein [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K+ +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFDEKKGANQELLPEFK--------DDEDQEFARRLFRRTILNSDYYRHLISEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK    ++  +
Sbjct: 234 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGS 286


>gi|32474248|ref|NP_867242.1| SAM-dependent methyltransferase [Rhodopirellula baltica SH 1]
 gi|32444786|emb|CAD74788.1| conserved hypothetical protein-putative SAM-dependent
           methyltransferases [Rhodopirellula baltica SH 1]
          Length = 453

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 124/398 (31%), Gaps = 75/398 (18%)

Query: 9   LVSSHLLSCVM-----RKRISLTCLLDLEYGDSAFRLLSQRDQIL--VRAIVNVTLRFLP 61
            ++   L  V          S +   +    D         D+ L     I+        
Sbjct: 37  ALAHATLREVTPEAPSDDGQSPSADTNAAETDQPAAESDPADRQLPACGEII-------D 89

Query: 62  RIDA---VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA---KRDK 115
            +D     +   LI+   R        LR+ +      +  D ++    +EQA   +R  
Sbjct: 90  LLDYDGNWIARGLINPASR--------LRIRLYAFSSEEQIDDSMWAERIEQAVARRRLT 141

Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175
              +       I     R    ++ R A    I       +       R +  + A    
Sbjct: 142 GPANPQGGERLIFSESDRMSGLIVDRYADCLSIQITGGALIPRTETLIREVTAAAARHQT 201

Query: 176 LYIDLTVKFDIETWAHK---------------LNAVMLPTGGIRLKELPESI-----VSL 215
               + V+ D  T  H+               L++    T   +   L  +I        
Sbjct: 202 PCQKVLVRMDDATVKHEGVSEETLAELQSLTTLDSEADSTVWYQHNGLEMAIDLQDGQKT 261

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKR 274
            G+ +       A++ +  +         VLD+C   GG       +GAK   A+D S+R
Sbjct: 262 GGYLDQQLNHAAAASYMADR--------RVLDICTYTGGFALAAARAGAKEVVAVDSSER 313

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----LFDAVLVDAPCSSTGTIRRHPDVL 329
            L+  + N +R  L      + D FD   ++      FDA+++D P              
Sbjct: 314 ALDIAKRNAERNQLTNVRFDQGDCFDDLKERRERGEQFDAIILDPP-------------R 360

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           +    +    +     +L    +  + PGGI+V  +CS
Sbjct: 361 FAGSRNQTNAALRAYTRLNASAVDLLPPGGILVTCSCS 398


>gi|260062175|ref|YP_003195255.1| NusB family protein [Robiginitalea biformata HTCC2501]
 gi|88783737|gb|EAR14908.1| NusB family protein [Robiginitalea biformata HTCC2501]
          Length = 366

 Score = 45.3 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPR 77
           + +    + LL     +         D      ++  TL     ++A ++         R
Sbjct: 242 LHQGAPESYLLPALLKN-------SEDMEFAMDLLRKTLNKNAALEAEIEGKTPNWDKER 294

Query: 78  KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120
                  LL++ +A++LY   + +   ++  +E AK     +  
Sbjct: 295 IAEIDGILLKMGIAELLYFPSIPERVTINEYLEIAKEYSTPKSS 338


>gi|225873910|ref|YP_002755369.1| hypothetical protein ACP_2325 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792716|gb|ACO32806.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 452

 Score = 45.3 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           +   LD+C   GG    L     +VT +D+S+  LE    NL          +     D+
Sbjct: 276 HGQALDICTYQGGFALHLAQVCPRVTGVDISRAALEVAELNL----AANYSALAASEVDW 331

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD +   +   +           + +    +  +    ++L L+ +  ++PGG++
Sbjct: 332 IEANAFDLLRDWSDAGNAYDTIVLDPPAFAKSKRALEGALRGYKELNLRALKMLRPGGVL 391

Query: 362 VFSNCSLD 369
           V  +CS  
Sbjct: 392 VTHSCSHH 399


>gi|328948517|ref|YP_004365854.1| hypothetical protein Tresu_1660 [Treponema succinifaciens DSM 2489]
 gi|328448841|gb|AEB14557.1| protein of unknown function Met10 [Treponema succinifaciens DSM
           2489]
          Length = 415

 Score = 45.3 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 20/141 (14%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHL----YAEDII 294
            +   VLD     G      + +GA+   ++D+S+  ++ +  N+          A    
Sbjct: 239 CHGKKVLDTFTHTGAFGLNAVKAGAREVVSVDISQEAVDMVEKNISLNGAEEKMKAVCAD 298

Query: 295 EMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D         + FD +++D P              +T+    I K+    +++ L+ +
Sbjct: 299 VFDLLKQYEASGEKFDVIILDPPA-------------FTKKAGKIEKAYGGYKEINLRAM 345

Query: 353 SFVKPGGIVVFSNCSLDKQDS 373
             +  GGI+V  +CS    ++
Sbjct: 346 RILNEGGILVSCSCSHYFDEN 366


>gi|123965243|ref|YP_001010324.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199609|gb|ABM71217.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
           9515]
          Length = 208

 Score = 45.3 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 56  TLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
            +  L  ID+ +D V+    L R     + +LR++   I  LD       D AV  A + 
Sbjct: 127 IIDNLQTIDSEIDEVMDGWRLKRLPRIDRDILRLAYIDIHLLDTPIAVACDEAVNLANKY 186

Query: 115 KENRHFAKLVNSILRR 130
            + +    ++N +LRR
Sbjct: 187 SDTQGRK-MINGVLRR 201


>gi|329113506|ref|ZP_08242287.1| N utilization substance protein B-like protein [Acetobacter pomorum
           DM001]
 gi|326697331|gb|EGE48991.1| N utilization substance protein B-like protein [Acetobacter pomorum
           DM001]
          Length = 174

 Score = 45.3 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 13/161 (8%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS----------QRDQILVRA 51
           +    AR+ +   L  + +       +++          L           + D  L   
Sbjct: 15  RPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFGTTLDGASYEDGCIPEADTQLFSH 74

Query: 52  IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109
           IV +      ++   ++  L     + R    L+ LL  + A+    D     +++  ++
Sbjct: 75  IVRLVTSLRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATEGDAPAPVLINEYMD 134

Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150
            A          +LVN +L  + +            +  P+
Sbjct: 135 VAHAFFSGDE-PRLVNGVLDTLFKRLAAERNHDTEQTQQPD 174


>gi|124024721|ref|YP_001013837.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. NATL1A]
 gi|123959789|gb|ABM74572.1| Antitermination protein NusB [Prochlorococcus marinus str. NATL1A]
          Length = 208

 Score = 45.3 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLR 87
           L         + +    + L    V++ +     ID  LD V+    L R     + +LR
Sbjct: 100 LPRLLALVDQKEI----RELAVRRVDLVIEKQDEIDHTLDSVMEGWRLKRLPRIDRDILR 155

Query: 88  VSVAQILYLDVADYAVVDLAVEQAKRD 114
           ++   ++  +       + AV  A R 
Sbjct: 156 LAWVDLIDFNTPMAVTCNEAVNLANRY 182


>gi|154340529|ref|XP_001566221.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063540|emb|CAM39721.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 583

 Score = 45.3 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           +S           ++   + + K A  QRKLL   +        VV+S CS+ ++++EEV
Sbjct: 460 TSGAINPDAQGNDFSMKEERVEKLARLQRKLLAHSLLSFDNCRTVVYSTCSVHEEENEEV 519

Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
           V++VL    +      L++    +         +    +      + D  +   +GF+  
Sbjct: 520 VRQVLDDERVKARGWRLSNIMPDTWKTRGVEREDEAHPL--HFTIRCDPATDATNGFYVA 577

Query: 437 ALRRL 441
              R+
Sbjct: 578 RFDRV 582


>gi|86143181|ref|ZP_01061583.1| putative N utilization substance protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85830086|gb|EAQ48546.1| putative N utilization substance protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 304

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDA-VLDFVLISSLPRKKYSLQQLLRVSVAQ-ILYLDVA 99
            + D+   + ++  T R     +A +L         R     + L+++++ + + +  + 
Sbjct: 195 DEEDRQFAKDLLLRTARNDEEYEAEILGNTPNWDQDRIAALDKILIKMALCEFLRFSSIP 254

Query: 100 DYAVVDLAVEQAKRDKENRHF 120
               ++  +E +K     +  
Sbjct: 255 VKVTINEYLELSKEYSTPKSS 275


>gi|299140507|ref|ZP_07033645.1| NusB family protein [Prevotella oris C735]
 gi|298577473|gb|EFI49341.1| NusB family protein [Prevotella oris C735]
          Length = 321

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +    ++  S+  LL             + D+   R +   T+    +    +   
Sbjct: 181 VLKTIKRFEQENKSMQELLPEYK--------DEEDKDFARKLFRATILNADQYQRYMSEA 232

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    ++++++A++L + ++     ++  V+ AK     +     +N +L
Sbjct: 233 SRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTPKS-GGYINGML 291

Query: 129 RRVSREKIELLQRIAGISII 148
             ++   ++       + + 
Sbjct: 292 DSIAHFLVDNGMVFKALKVH 311


>gi|258511431|ref|YP_003184865.1| hypothetical protein Aaci_1451 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478157|gb|ACV58476.1| Protein of unknown function methylase putative [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 413

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHL------YAEDIIEM 296
            VLD     G      +  GA   TA+D+S   +E  R N  R  +         +  + 
Sbjct: 238 HVLDCFCHTGAFAVHALHYGAAHGTAVDISADAVELARQNARRNGVLDRADFAVANAFDY 297

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                     +D V++D P              + +    I  +A   +++ L+ +  ++
Sbjct: 298 LREQDARGARYDVVILDPPA-------------FAKSRQSIESAARGYKEINLRAMRILR 344

Query: 357 PGGIVVFSNCSLD 369
            GG +V ++CS  
Sbjct: 345 EGGFLVTASCSYH 357


>gi|195953014|ref|YP_002121304.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1]
 gi|195932626|gb|ACG57326.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1]
          Length = 139

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 11/143 (7%)

Query: 1   MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV---NVT 56
           MK     AR ++   L         ++     +   +  +   ++D      ++      
Sbjct: 1   MKDIRARAREIAFRSLYAWDISGGEISI--ISQEIINMSKPPLKKDSQKYTLLITKKFG- 57

Query: 57  LRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114
              +  ID  +   L +  L       + +LR +  ++LY+    +   +   +E A  +
Sbjct: 58  -ENIENIDKKIASYLENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIA-SN 115

Query: 115 KENRHFAKLVNSILRRVSREKIE 137
             N+     +N IL ++S++   
Sbjct: 116 YGNKKTPSFINGILSKLSKDIYN 138


>gi|262372380|ref|ZP_06065659.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter junii SH205]
 gi|262312405|gb|EEY93490.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter junii SH205]
          Length = 272

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 19/151 (12%)

Query: 245 VLDLCAAPGG--KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           V+DL    G             KVTA D+ +  LE  + N  R  L          FD  
Sbjct: 110 VVDLGTGTGAIALALASERPQWKVTATDIYQPTLEVAQENAIRHGLTHVKFACGAWFDAL 169

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ-----RKLLLQGISFVKP 357
            K+ FD ++ + P            +   +   +    A  Q       +++QG S++ P
Sbjct: 170 EKQFFDLIVSNPP----YIDPEDVHMQMLKSEPERALIADKQGLADLETIIVQGKSWLNP 225

Query: 358 GGIVV----F----SNCSLDKQDSEEVVQKV 380
            G +V    +    +  ++ +++    +Q +
Sbjct: 226 NGWIVLEHGYDQGEAVRTMFEKEGFSQIQTI 256


>gi|308190107|ref|YP_003923038.1| transcription termination factor [Mycoplasma fermentans JER]
 gi|307624849|gb|ADN69154.1| transcription termination factor [Mycoplasma fermentans JER]
          Length = 139

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 21/142 (14%)

Query: 1   MKSGMNARLVSSHLLSCVM--RKRISLTCLLDLE--YGDSAFRLLSQRDQILVRAIVNVT 56
           M++    RL   ++L       ++I++  L D E    +  F  L +             
Sbjct: 1   MQNRRQFRLGIINVLYRYELMDQKINVNELFDSESNLSNEQFSHLEK------------I 48

Query: 57  LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
            +        +   L    S  R    ++ +L     ++  + +    +++ +VE  K  
Sbjct: 49  AKNYDFYKKAVSQFLKEGWSWERISPLIRAILINGTHEL--MSIEPKIIINESVEITKYY 106

Query: 115 KEN-RHFAKLVNSILRRVSREK 135
            E+ ++F K+VN+IL +V +  
Sbjct: 107 FEDEKNFYKMVNAILEKVYKFF 128


>gi|322433866|ref|YP_004216078.1| hypothetical protein AciX9_0224 [Acidobacterium sp. MP5ACTX9]
 gi|321161593|gb|ADW67298.1| hypothetical protein AciX9_0224 [Acidobacterium sp. MP5ACTX9]
          Length = 423

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 21/139 (15%)

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKL-------RCNLDRLHLYAEDII 294
           +   LD+C   GG    L  +  +VT +D S+  LE              R      D  
Sbjct: 249 HGRALDVCTYQGGFALHLAQTCDRVTGVDTSRAALEVADANLALNPHLKARTDWMEADAF 308

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           ++        + FD +++D P              + +    +  +    ++L L+ +  
Sbjct: 309 DLLREYESTGERFDTIVLDPPA-------------FAKSQRALEGALRGYKELNLRALKM 355

Query: 355 VKPGGIVVFSNCSLD-KQD 372
           + PGG +V  +CS     +
Sbjct: 356 LNPGGTLVTCSCSHHVPLE 374


>gi|325298378|ref|YP_004258295.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170]
 gi|324317931|gb|ADY35822.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170]
          Length = 308

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+   R +   ++        ++     +  L R       ++++++A+IL + ++ 
Sbjct: 205 DEEDRDFARRLFRRSILNADYYRHLISENSRNWDLKRVAVMDVIIMQIALAEILSFPNIP 264

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
               ++  VE AK     +     +N  L 
Sbjct: 265 VNVSLNEYVEIAKLYSTPKS-GGFINGTLD 293


>gi|134299906|ref|YP_001113402.1| PUA domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134052606|gb|ABO50577.1| SAM-dependent methyltransferase [Desulfotomaculum reducens MI-1]
          Length = 418

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLE------KLRCNLDRLHLYAEDIIEM 296
            VLD     G  +      GAK    LD++   LE      +L    DR      +  + 
Sbjct: 246 RVLDCFCHTGTFSMYATKYGAKEVLGLDIAAPALEVARVNAQLNGYGDRCTFKECNSFDE 305

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD V++D P              +T+    I  +    +++ L+G+  + 
Sbjct: 306 LRAMERAEEKFDVVILDPPA-------------FTKSRKAIEGAIRGYKEINLRGMKLLP 352

Query: 357 PGGIVVFSNCSLDKQDSE--EVVQKVLRSSPIPVELVPLN 394
           PGG ++  +CS    +    +V+    R +   + LV L 
Sbjct: 353 PGGYLITCSCSYHMHEDMFLDVILDAARDAGRQLRLVELR 392


>gi|322493259|emb|CBZ28544.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 589

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 6/152 (3%)

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
              + D      +   +    +   +S           +++  + + K A  QRKLL   
Sbjct: 441 HHGDADRKAAAEEGQLNGGDHEESTNSGAINPAAQGNEFSKKEERVKKLARLQRKLLAHS 500

Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA--MALSP 409
           +        VV+S CS+ ++++EEVV++VL    +      L++    +           
Sbjct: 501 LLSFDNCRTVVYSTCSVHEEENEEVVRQVLDDERVKARGWRLSNVMPNTWKTRGVEREGE 560

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           E  +R T     + D  +   +GF+     R+
Sbjct: 561 EHPLRFT----IRCDPATDATNGFYVARFDRV 588


>gi|150006310|ref|YP_001301054.1| putative N utilization substance protein [Bacteroides vulgatus ATCC
           8482]
 gi|212691834|ref|ZP_03299962.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855]
 gi|237708040|ref|ZP_04538521.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724809|ref|ZP_04555290.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|254885163|ref|ZP_05257873.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|265756189|ref|ZP_06090518.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294776295|ref|ZP_06741779.1| transcription antitermination factor NusB [Bacteroides vulgatus
           PC510]
 gi|319641350|ref|ZP_07996045.1| N utilization substance protein [Bacteroides sp. 3_1_40A]
 gi|149934734|gb|ABR41432.1| putative N utilization substance protein [Bacteroides vulgatus ATCC
           8482]
 gi|212665590|gb|EEB26162.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855]
 gi|229437004|gb|EEO47081.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457868|gb|EEO63589.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|254837956|gb|EET18265.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|263233780|gb|EEZ19389.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294449882|gb|EFG18398.1| transcription antitermination factor NusB [Bacteroides vulgatus
           PC510]
 gi|317387031|gb|EFV67915.1| N utilization substance protein [Bacteroides sp. 3_1_40A]
          Length = 308

 Score = 44.9 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K  +   LL             + DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFDEKNGAKQELLPEFK--------DEEDQDFARRLFRRTILNADYYRHLISEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +  L R  +    ++++++A+IL + ++     ++  VE AK     +     +N  L
Sbjct: 234 TKNWDLDRVAFMDVVIMQIALAEILSFPNIPVSVSLNEYVEIAKLYSTPKS-GGFINGTL 292

Query: 129 R 129
            
Sbjct: 293 D 293


>gi|146296788|ref|YP_001180559.1| protein of unknown function Met10 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410364|gb|ABP67368.1| SAM-dependent methyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 389

 Score = 44.9 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 20/131 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED------IIEM 296
           +VLD     GG T      GA     +D+S   +E+   N    ++  +       + + 
Sbjct: 217 TVLDCFCHTGGFTVNAAKFGASKVIGVDISDTAIEQAMKNAKLNNVENKCEFVVSNVFDY 276

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  K+ +D V++D P              + +    I  +    +++ L+ +  +K
Sbjct: 277 LNELDDKKEKYDVVILDPPA-------------FAKSVHTIENAKRGYKEINLRAMKILK 323

Query: 357 PGGIVVFSNCS 367
            GGI+V  +CS
Sbjct: 324 KGGILVTCSCS 334


>gi|162447338|ref|YP_001620470.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A]
 gi|161985445|gb|ABX81094.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A]
          Length = 126

 Score = 44.9 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 50  RAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108
           + ++N  +  L  +D ++   + + ++ R       ++RV+V  +L        V++ A+
Sbjct: 37  KEVINGMIDELEHVDFLISSTIKNYTIDRLNLVDLAIIRVAVYALLKEIDPAEIVINEAI 96

Query: 109 EQAKRD--KENRHFAKLVNSILRRVSR 133
           E +K     ++    K  NS++  + +
Sbjct: 97  ELSKEYTDLDDEKQHKFNNSLIDNIYK 123


>gi|317502725|ref|ZP_07960836.1| NusB family protein [Prevotella salivae DSM 15606]
 gi|315666169|gb|EFV05725.1| NusB family protein [Prevotella salivae DSM 15606]
          Length = 317

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +    +   S   LL               D+   R +   T+    +    +   
Sbjct: 181 VLKTIKRFEQANGSEQELLPEYK--------DDEDKEFARKLFRATIINADQYQHYMSEA 232

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    ++++++A++L + ++     ++  V+ AK    ++  A  +N +L
Sbjct: 233 SRNWDFGRLAYMDIVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTSKS-AGYINGML 291

Query: 129 RRVSREKIELLQRIAGISII 148
             ++R  ++    +  +   
Sbjct: 292 DSIARFLVDNGMMLKTLREH 311


>gi|313112653|ref|ZP_07798311.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310625076|gb|EFQ08373.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 408

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 19/136 (13%)

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            +VLD     G         GA      D+S   +   + N  R  L   D +  D F+ 
Sbjct: 236 HTVLDCFTHTGSFALNAAAGGAARVTAADISAEAIAMAQRNAQRNGLTNMDFLCEDTFEL 295

Query: 302 CP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            P        +D +++D P              +T+    +  +    +++  + +  + 
Sbjct: 296 LPRLEREGHPYDFIILDPPA-------------FTKARRTVENAMRGYKEINYRAMKLLP 342

Query: 357 PGGIVVFSNCSLDKQD 372
            GG +  ++CS    +
Sbjct: 343 RGGYLATASCSHFATE 358


>gi|281423250|ref|ZP_06254163.1| NusB family protein [Prevotella oris F0302]
 gi|281402586|gb|EFB33417.1| NusB family protein [Prevotella oris F0302]
          Length = 319

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +    ++  S+  LL             + D+   R +   T+    +    +   
Sbjct: 181 VLKTIKRFEQENTSMQELLPEYK--------DEEDKDFARKLFRATILNADQYQRYMSEA 232

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    ++++++A++L + ++     ++  V+ AK     +     +N +L
Sbjct: 233 SRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAK-LYSTQKSGGYINGML 291

Query: 129 RRVSREKIELLQRIAGISII 148
             ++   ++       + + 
Sbjct: 292 DSIAHFLVDNGMVFKALKVH 311


>gi|284041158|ref|YP_003391088.1| NusB antitermination factor [Spirosoma linguale DSM 74]
 gi|283820451|gb|ADB42289.1| NusB antitermination factor [Spirosoma linguale DSM 74]
          Length = 378

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 7   ARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
            R ++   L  V     + L  L D            + D++ +  +   ++      + 
Sbjct: 241 VRGLAIRTLKSVQSATGLQLEPLTDDW----------EEDELFLNTLFEKSIENDADYEQ 290

Query: 66  VLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKL 123
           +L   L +  + R     + +L+++V ++L + ++     ++  +E AK     +   K 
Sbjct: 291 LLADQLKNWDVERVAMIDKIILKLAVCELLSFPNIPVKVTINEYIELAKAYSTPKS-GKF 349

Query: 124 VNSILRR 130
           VN IL  
Sbjct: 350 VNGILDN 356


>gi|288928412|ref|ZP_06422259.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331246|gb|EFC69830.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 347

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 40/144 (27%), Gaps = 6/144 (4%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSL 82
                      +       + D+   R +   T+    +    +     +    R  Y  
Sbjct: 165 PANKAKQELLPEYK----DEEDKDFARKLFRSTILNGEQYQRYMSENSRNWDFSRLAYMD 220

Query: 83  QQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
             ++++++A++L + ++     ++  VE AK    +R    +   +              
Sbjct: 221 VVIMQIAIAEMLNFPNIPVSVTINEYVELAKLYSTHRSGGYINGMLDTIARGLVAHGQMM 280

Query: 142 IAGISIIPEWFKERLENFYGKERV 165
            A     P    +        +  
Sbjct: 281 KAMPEPRPRKQFDNGRKNGEHKHA 304


>gi|226942497|ref|YP_002797570.1| SAM-dependent methyltransferase [Azotobacter vinelandii DJ]
 gi|226717424|gb|ACO76595.1| SAM-dependent methyltransferase [Azotobacter vinelandii DJ]
          Length = 397

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 26/187 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAED------IIEM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +       + E 
Sbjct: 223 RVLDLFSYVGGWGVQAAAFGASEVMCVDGSALALDGVERNAALNGVAEKMACVEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD V+ D P              + +   D+       R+L    +  + 
Sbjct: 283 MKELKAAEERFDVVIADPPA-------------FIKRKKDLKNGEAAYRRLNEAAMRLLN 329

Query: 357 PGGIVVFSNCSLDKQDSEEV-----VQKVLRSSPIPVELVPLNSAYWKSIDMAMA-LSPE 410
             GI+V ++CS+   + +         + L      +E       +     +A       
Sbjct: 330 KDGILVSASCSMHLPEDDLQNILLSSARHLDRHIQLLERGGQGPDHPVHPAIAETRYIKS 389

Query: 411 GWIRITP 417
              RI P
Sbjct: 390 LTCRILP 396


>gi|193216078|ref|YP_001997277.1| Fmu (Sun) domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089555|gb|ACF14830.1| Fmu (Sun) domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 391

 Score = 44.5 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 82/254 (32%), Gaps = 37/254 (14%)

Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW------------ 189
            A    +P    ++ +N +  +   A  +  I  +   L   F  E              
Sbjct: 104 HAESDFLPGLIIDKFDNSFSIQTFSAGMENHIQTICDVLIAHFSPENIVLRNESQLRELE 163

Query: 190 -----AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                   L         I   E+   I  L G   G +  Q  +           + L 
Sbjct: 164 NLPQEKKVLLGNPTDLIRIYDTEIQYDIDILNGHKTGFFLDQRENRKRIRPFAQDAHVLD 223

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--- 301
           +    +  G           ++ A+D+S+  L++   N +   L  E++I+ DAF +   
Sbjct: 224 IF--TSDGGFSLNAAYGKAKEILAVDISEEALKRAHHNAEINQLKIENLIKEDAFSFIEK 281

Query: 302 --CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               ++ FD V++D P  +             +    +  +    +KL    I  VK GG
Sbjct: 282 LEHEERKFDLVILDPPSLT-------------KSKKTVSTAIHAYKKLNRSAIKLVKKGG 328

Query: 360 IVVFSNCSLDKQDS 373
            +  ++CS    + 
Sbjct: 329 FLATASCSHHVGED 342


>gi|163783320|ref|ZP_02178313.1| hypothetical protein HG1285_13762 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881428|gb|EDP74939.1| hypothetical protein HG1285_13762 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 391

 Score = 44.5 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 20/174 (11%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG- 263
            +   + ++++P   +  +++   ++   V           LD+    GG    +   G 
Sbjct: 182 WEHDLKYLINIPEGQKTGFFLDQRNSRRFV-RSLVEPGDRCLDVFCHTGGFALNMKKMGA 240

Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-----CPKKLFDAVLVDAPCSS 318
            +V A+D+S+  LE  + N +   L   + ++ +AFDY        + FD V++D P   
Sbjct: 241 ERVVAVDLSELALEVGKRNEELNGLSGIEWVQANAFDYLRELDTKGEKFDVVVIDPPS-- 298

Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
                      + ++   +  +    ++L ++G+   K GG +   +CS    +
Sbjct: 299 -----------FAKNKHAVPNALRGYKELCVRGLKVTKSGGYLAVFSCSFHITE 341


>gi|315023990|gb|EFT36992.1| Transcription termination protein NusB [Riemerella anatipestifer
           RA-YM]
          Length = 301

 Score = 44.5 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VA 99
            + D+   + ++  +L      +  L   L +  L R     + +L  ++ ++ +     
Sbjct: 204 DEEDRSFAQKLLQYSLNHWEDTEVKLKERLKNWELDRISLMDRVILIAAITELDHFPLTP 263

Query: 100 DYAVVDLAVEQAKRDKENRH 119
              +++  +E +K    ++ 
Sbjct: 264 SKVIINEYIEISKAFSTDKS 283


>gi|281420711|ref|ZP_06251710.1| NusB family protein [Prevotella copri DSM 18205]
 gi|281405484|gb|EFB36164.1| NusB family protein [Prevotella copri DSM 18205]
          Length = 355

 Score = 44.5 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQ-ILYLDVA 99
              D+   R +   T+         +   L +    R  Y    ++++++A+ + +  + 
Sbjct: 211 DAEDREFARKLFRATILNCDTYQRYMSEALRNWDFSRLAYMDVIIMQIAIAEVMNFPGIP 270

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
               ++  VE AK           VN +L  + R
Sbjct: 271 ATVTINEYVELAKAY-STPRSGGYVNGMLDSICR 303


>gi|303240940|ref|ZP_07327451.1| protein of unknown function Met10 [Acetivibrio cellulolyticus CD2]
 gi|302591526|gb|EFL61263.1| protein of unknown function Met10 [Acetivibrio cellulolyticus CD2]
          Length = 389

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD  +  G         GA     +D+S   +E    N    +L      E       
Sbjct: 217 KVLDCFSHTGSFALHAGYYGASNVLGIDISDHAVECASRNAKLNNLDGVCTFEAANTFDK 276

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            ++ +D            TI   P   +T+    +  +    +++ L+ +  +KPGG +V
Sbjct: 277 LREFYD------TNEQFDTIILDPPA-FTKTRGAVEGAVRGYKEINLRAMKIIKPGGFLV 329

Query: 363 FSNCSLD 369
             +CS  
Sbjct: 330 TCSCSHH 336


>gi|283778024|ref|YP_003368779.1| methyltransferase small [Pirellula staleyi DSM 6068]
 gi|283436477|gb|ADB14919.1| methyltransferase small [Pirellula staleyi DSM 6068]
          Length = 434

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 20/131 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            VLD+    GG        G   +V  +D SKR + + + N +   L        D F  
Sbjct: 248 KVLDMFCYTGGFAMNASRHGQAAEVLGVDTSKRAVAQAQKNAEINGLTNVTFEAGDGFQS 307

Query: 302 -----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FDA+++D P              + R    + ++     +L    ++ + 
Sbjct: 308 LEKFATEGRKFDAIVLDPP-------------KFARSRSQVDQAIQAYHRLNRAAVALLP 354

Query: 357 PGGIVVFSNCS 367
           PGGI+V  +CS
Sbjct: 355 PGGILVTHSCS 365


>gi|189424156|ref|YP_001951333.1| hypothetical protein Glov_1090 [Geobacter lovleyi SZ]
 gi|189420415|gb|ACD94813.1| protein of unknown function Met10 [Geobacter lovleyi SZ]
          Length = 391

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD     G   A     GA+    LD+S+R +     N     L        D   + 
Sbjct: 219 DVLDCFCYSGSWAAHAGFFGARSVLGLDISERAVALAGRNAALNGLS-------DRVSFE 271

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FD +        +  +       + ++  ++ ++      +  + +  ++PGG ++
Sbjct: 272 ECDAFDRLRSLKLEGRSFGVVVMDPPAFVKNRKNLAEATKGYITINRRALELLEPGGYLI 331

Query: 363 FSNCSLD 369
             +CS  
Sbjct: 332 SCSCSYH 338


>gi|53804792|ref|YP_113524.1| hypothetical protein MCA1049 [Methylococcus capsulatus str. Bath]
 gi|53758553|gb|AAU92844.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 399

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 20/135 (14%)

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLE------KLRCNLDRLHLYAEDII 294
              VLDL +  GG   Q  + GA+    +D S+  L       +L    DR+    +D+ 
Sbjct: 222 CQRVLDLFSYTGGWGVQAALGGAESVDCVDSSESALALAAENARLNGVADRMGFIRQDVF 281

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E        ++ +D ++ D P                +   D+        +L    +  
Sbjct: 282 EFLKQLRHKRQRYDLIVADPPAL-------------IKRKKDVKAGVEAYHRLNQAAMQV 328

Query: 355 VKPGGIVVFSNCSLD 369
           + PGG++V ++CS +
Sbjct: 329 LNPGGVLVSASCSFN 343


>gi|71654236|ref|XP_815742.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880818|gb|EAN93891.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1030

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 345 RKLLLQGISFVK-PGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           R+ L Q + +V+  GG+VV++  S++  ++E V+  VL    
Sbjct: 552 RQELAQALEYVRMQGGVVVYATHSMNPLENEAVICSVLTEFK 593


>gi|78043572|ref|YP_360269.1| hypothetical protein CHY_1437 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995687|gb|ABB14586.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 390

 Score = 44.1 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 20/141 (14%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA----EDII 294
            +   VLD     G  +      G  +V  +D+S   + + + N             +  
Sbjct: 213 FHGKKVLDCFCHTGAFSVYAAGFGAKEVIGVDISSEAITRAQENAVLNGFQDKIFFIEAN 272

Query: 295 EMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
             D      K    FD V++D P              +T+  + +  +    +++ L+ +
Sbjct: 273 CFDYLRELEKNRANFDIVILDPPA-------------FTKSKEALPGAIRGYKEINLRAL 319

Query: 353 SFVKPGGIVVFSNCSLDKQDS 373
             +  GGI+V S+CS    + 
Sbjct: 320 KLLNEGGILVTSSCSYHLTED 340


>gi|260432197|ref|ZP_05786168.1| Fmu [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416025|gb|EEX09284.1| Fmu [Silicibacter lacuscaerulensis ITI-1157]
          Length = 40

 Score = 44.1 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
              L+ EG +R+ PD          GMDGF+   L +
Sbjct: 6   PDWLTEEGGLRLRPDYW----PDLGGMDGFYIACLSK 38


>gi|152988111|ref|YP_001345842.1| hypothetical protein PSPA7_0447 [Pseudomonas aeruginosa PA7]
 gi|150963269|gb|ABR85294.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 398

 Score = 44.1 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFD- 300
            VLDL +  GG   Q    GA      D S   L+ +  N     +      +E D F+ 
Sbjct: 223 RVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEA 282

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V+ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAADERFDVVIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   +++  
Sbjct: 330 KDGILVSASCSMHLPENDLQ 349


>gi|302871980|ref|YP_003840616.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574839|gb|ADL42630.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 389

 Score = 44.1 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED------IIEMD 297
           VLD     GG T      GA     +D+S   +E+   N     + ++       + +  
Sbjct: 218 VLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESKCEFVVANVFDYL 277

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ +D +++D P              + +    +  +    +++ L+ +  +K 
Sbjct: 278 NELDDKKEKYDMIILDPPA-------------FAKSMHTLENAKRGYKEINLRAMKILKK 324

Query: 358 GGIVVFSNCS 367
           GGI+V  +CS
Sbjct: 325 GGILVTCSCS 334


>gi|325104804|ref|YP_004274458.1| NusB antitermination factor [Pedobacter saltans DSM 12145]
 gi|324973652|gb|ADY52636.1| NusB antitermination factor [Pedobacter saltans DSM 12145]
          Length = 313

 Score = 44.1 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 29  LDLEYGDSAFRLLSQ---RDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQ 84
            D   G+S    +S     D+  +  + + TL        ++     +    R       
Sbjct: 189 FDEVDGNSKLAQISSNWIEDREFIIDLFHKTLANDASCQEMIAGKTKNWEADRIAMMDIL 248

Query: 85  LLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119
           ++++++A+++Y   +     ++  +E AK     + 
Sbjct: 249 IMKMALAELIYFSSIPVKVTINEYLEIAKEFSTPKS 284


>gi|218290104|ref|ZP_03494266.1| methyltransferase small [Alicyclobacillus acidocaldarius LAA1]
 gi|218239813|gb|EED07002.1| methyltransferase small [Alicyclobacillus acidocaldarius LAA1]
          Length = 413

 Score = 44.1 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 20/133 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHL------YAEDIIEM 296
            VLD     G      +  GA    A+D+S   +E  R N  R  +         +  + 
Sbjct: 238 HVLDCFCHTGAFAVHALHYGAAHVTAVDISADAVELARQNARRNGVLDRADFAVANAFDY 297

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                     +D V++D P              + +    I  +    +++ L+ +  ++
Sbjct: 298 LREQDARGARYDVVILDPPA-------------FAKSRQSIESATRGYKEINLRAMRILR 344

Query: 357 PGGIVVFSNCSLD 369
            GG +V ++CS  
Sbjct: 345 EGGFLVTASCSYH 357


>gi|327482706|gb|AEA86016.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 398

 Score = 44.1 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 26/188 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +         E 
Sbjct: 223 RVLDLFSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGVAEKMTCVEGDAFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD V+ D P              + +   D+       R+L    +  + 
Sbjct: 283 MKELKNAEERFDVVITDPPA-------------FIKRKKDLKNGEAAYRRLNETAMRLLN 329

Query: 357 PGGIVVFSNCSLDKQDSEEV-----VQKVLRSSPIPVELVPLNSAYWKSIDMAMA-LSPE 410
             GI+V ++CS+   + +         + L  +   +E       +     +        
Sbjct: 330 KDGILVSASCSMHLPEDDLQNILLGSARHLDRNIQLLERGAQGPDHPVHPAIPETRYIKS 389

Query: 411 GWIRITPD 418
              RI P+
Sbjct: 390 LTCRILPN 397


>gi|221506648|gb|EEE32265.1| williams-beuren syndrome critical region protein, putative
           [Toxoplasma gondii VEG]
          Length = 919

 Score = 44.1 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + + FQ  LL   ++      +  +S CS   +++E VV +VL  
Sbjct: 608 QLSRFQGTLLAHALTTFPKLSVCCYSTCSSYVEENEAVVARVLAR 652


>gi|221486964|gb|EEE25210.1| williams-beuren syndrome critical region protein, putative
           [Toxoplasma gondii GT1]
          Length = 931

 Score = 44.1 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + + FQ  LL   ++      +  +S CS   +++E VV +VL  
Sbjct: 620 QLSRFQGTLLAHALTTFPKLSVCCYSTCSSYVEENEAVVARVLAR 664


>gi|237831783|ref|XP_002365189.1| hypothetical protein TGME49_060160 [Toxoplasma gondii ME49]
 gi|211962853|gb|EEA98048.1| hypothetical protein TGME49_060160 [Toxoplasma gondii ME49]
          Length = 954

 Score = 44.1 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383
           + + FQ  LL   ++      +  +S CS   +++E VV +VL  
Sbjct: 643 QLSRFQGTLLAHALTTFPKLSVCCYSTCSSYVEENEAVVARVLAR 687


>gi|313206914|ref|YP_004046091.1| nusb antitermination factor [Riemerella anatipestifer DSM 15868]
 gi|312446230|gb|ADQ82585.1| NusB antitermination factor [Riemerella anatipestifer DSM 15868]
 gi|325335649|gb|ADZ11923.1| NusB [Riemerella anatipestifer RA-GD]
          Length = 301

 Score = 43.7 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VA 99
            + D+   + ++  +L      +  L   L +  L R     + +L  ++ ++ +     
Sbjct: 204 DEEDRSFAQKLLQYSLNHWEDTEVKLKERLKNWELDRVSLMDRVILIAAITELDHFPLTP 263

Query: 100 DYAVVDLAVEQAKRDKENRH 119
              +++  +E +K    ++ 
Sbjct: 264 SKVIINEYIEISKAFSTDKS 283


>gi|282879732|ref|ZP_06288462.1| transcription antitermination factor NusB [Prevotella timonensis
           CRIS 5C-B1]
 gi|281306401|gb|EFA98431.1| transcription antitermination factor NusB [Prevotella timonensis
           CRIS 5C-B1]
          Length = 334

 Score = 43.7 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +        S   LL             + D+   R +   T+         +   
Sbjct: 181 VLKTIKRFDAANKSEQELLPEYR--------DEEDREFARKLFRATILNADTYQRYMSET 232

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    ++++++A++L + ++     ++  V  AK     +     +N +L
Sbjct: 233 SHNWDFSRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVNLAKLYSTPKS-GGYINGML 291

Query: 129 RRVSRE 134
             ++R 
Sbjct: 292 DAIARY 297


>gi|224026161|ref|ZP_03644527.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM
           18228]
 gi|224019397|gb|EEF77395.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM
           18228]
          Length = 308

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + DQ   R +   T+        ++     +  L R       ++++++A+IL + ++ 
Sbjct: 205 DEEDQEFARRLFRRTILNADYYRHLISEGSKNWDLNRVAVMDVVIMQIALAEILSFPNIP 264

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
               ++  VE AK     +     +N  L 
Sbjct: 265 VNVSLNEYVEIAKLYSTPKS-GGFINGTLD 293


>gi|218459456|ref|ZP_03499547.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
           [Rhizobium etli Kim 5]
          Length = 143

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 38/154 (24%), Gaps = 21/154 (13%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           +  +L+ +  ++  +   L        F      D+  +  IV   LR       +++  
Sbjct: 10  AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMND- 66

Query: 71  LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
                         ++                        A    +++     +++    
Sbjct: 67  -----DSAAAIAHAVM-------------FRQWGFTPDRLATELADDKFAPPPLSADALA 108

Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
               +            IPEW +   E  +G   
Sbjct: 109 AFASRSLDDAPPHIRGDIPEWIQPSFEQAFGTGW 142


>gi|89898049|ref|YP_515159.1| transcription antitermination protein NusB [Chlamydophila felis
           Fe/C-56]
 gi|89331421|dbj|BAE81014.1| N utilization protein B [Chlamydophila felis Fe/C-56]
          Length = 154

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN--VTLRFLPRIDA 65
           R +   +L  +    +S   L+ L   ++A        +    A+      L   P +D 
Sbjct: 26  REIVLQMLYALDMDPMSEESLVPLLMAETAVTQ-----KHAFSALNFSKEILAKSPELDL 80

Query: 66  VLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121
           ++   + + S  +     + +LR+++ +  +   +    ++  A    K+       +
Sbjct: 81  LIAQTVKNTSFEKLTLMEKNVLRLALFEHFHGQHINAAILIAEATRLVKKFSYTEACS 138


>gi|257437706|ref|ZP_05613461.1| SAM-dependent methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257200013|gb|EEU98297.1| SAM-dependent methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 224

 Score = 43.7 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 59/207 (28%), Gaps = 16/207 (7%)

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287
           A +  +           DLC+  G  + +    G +     L++       L        
Sbjct: 26  ALLLARFSEPKRAWRAADLCSGCGIVSLEWHDRGHRGPCLGLELQPEASALLAAACTEQG 85

Query: 288 LYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
           +     +  D   +   +  +D    + P  + G           R   D          
Sbjct: 86  IEHITPVCADLRSFREGEGSYDLCACNPPYFTAGEQAADRARATARHETDCTL-----DD 140

Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406
           +       +K GG +  S C   + +    V  VLR++ +  + +        +      
Sbjct: 141 VCKCAFRLLKDGGRL--SLC--HRPERLAEVLAVLRANRLEPKRLAFVKNRPDAAPWLFL 196

Query: 407 LSPEG----WIRITPDMLEKIDGVSSG 429
           +  +      +R+ PD+L        G
Sbjct: 197 VEAQKNRKTGLRVEPDVLISAGAAMYG 223


>gi|218681793|ref|ZP_03529544.1| Fmu (Sun) domain protein [Rhizobium etli CIAT 894]
          Length = 173

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
          +  +L+ +  ++  +   L        F      D+  +  IV   LR       ++D
Sbjct: 10 AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMD 65


>gi|74026288|ref|XP_829710.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70835096|gb|EAN80598.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 1068

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 1/126 (0%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +   D      K  +   +  A               +      + K   + R 
Sbjct: 476 GNCNYVLCCPDTTADGCKPRYALGVSGAMEGEEEGEGNAVVNRFVSVCPRVNKLFHYLRS 535

Query: 347 LLLQGISFVKP-GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            L+Q + +  P  G VV++  SL+  ++E VV  VL            +       D   
Sbjct: 536 ELMQALQYANPRCGRVVYATHSLNPLENEAVVASVLTDLSRESSDRVYHLIPLPEGDKGP 595

Query: 406 ALSPEG 411
               EG
Sbjct: 596 FQPLEG 601


>gi|308234160|ref|ZP_07664897.1| SAM-dependent methyltransferase [Atopobium vaginae DSM 15829]
 gi|328944417|ref|ZP_08241879.1| methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491001|gb|EGF22778.1| methyltransferase [Atopobium vaginae DSM 15829]
          Length = 430

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDY 301
            VLD  +  G       V+GAK   A+D+S+  L+  + N    H+ +       D  DY
Sbjct: 251 RVLDCFSHVGPFALNAAVAGAKTVRAVDISELALKLAQENARLNHVEHIVHCSCADVLDY 310

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
             K   D     A       I   P   +T+    I  +    +++    +  +  GG +
Sbjct: 311 LRKLEQDKNYAHAEGGPFDVIILDPPA-FTKSRSTISSAMRGYKEINYHAMKLLPRGGYL 369

Query: 362 VFSNCS 367
              +CS
Sbjct: 370 ATCSCS 375


>gi|289807189|ref|ZP_06537818.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 139

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438
            +  +    VE +PL   +    D   AL+PEG++ + P + +          GFF   L
Sbjct: 1   WLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQIYDCE--------GFFVARL 49

Query: 439 RRL 441
           R++
Sbjct: 50  RKM 52


>gi|256820792|ref|YP_003142071.1| N utilization substance protein B [Capnocytophaga ochracea DSM
           7271]
 gi|256582375|gb|ACU93510.1| N utilization substance protein B [Capnocytophaga ochracea DSM
           7271]
          Length = 302

 Score = 43.3 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVN-VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88
           D  +  S ++   ++D   +  ++    L      D ++  +      R       LL++
Sbjct: 184 DKYFVPSLYKDEEEKD--FLTGLLKKAVLNDSKWEDEIITRMTGWEKDRVAVIDSILLKM 241

Query: 89  SVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           +V ++L +  +     ++  +E AK     +  A  +N +++ V +
Sbjct: 242 AVCEMLSFPSIPVKVTLNEYLELAKEYSTTKSSA-FINGVMKNVHK 286


>gi|261335744|emb|CBH18738.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 1068

 Score = 43.3 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 1/126 (0%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346
                 +   D      K  +   +  A               +      + K   + R 
Sbjct: 476 GNCNYVLCCPDTTADGCKPRYALGVSGAMEGEEEGEGNAVVNRFVSVCPRVNKLFHYLRS 535

Query: 347 LLLQGISFVKP-GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405
            L+Q + +  P  G VV++  SL+  ++E VV  VL            +       D   
Sbjct: 536 ELMQALQYANPRCGRVVYATHSLNPLENEAVVASVLTDLSRESSDRVYHLIPLPEDDKGP 595

Query: 406 ALSPEG 411
               EG
Sbjct: 596 FQPLEG 601


>gi|224542027|ref|ZP_03682566.1| hypothetical protein CATMIT_01200 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525084|gb|EEF94189.1| hypothetical protein CATMIT_01200 [Catenibacterium mitsuokai DSM
           15897]
          Length = 400

 Score = 43.3 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 18/133 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHL----YAEDIIEMDA 298
           +VLD  +  GG      + GAK   A+DVS+  L++   N    HL            D 
Sbjct: 230 TVLDCFSHTGGFALNAAIGGAKHVTAVDVSQTALDQGLANAKMNHLEERMSFVQDDVFDY 289

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
            D C +  +D +++D P              +T+    +  +    + + ++ +  ++ G
Sbjct: 290 LDKCHQGQYDIIVLDPPA-------------FTKSRRTVNHAYNGYKNINMKAMKLLRQG 336

Query: 359 GIVVFSNCSLDKQ 371
           G ++  +CS   +
Sbjct: 337 GYLITCSCSRFME 349


>gi|311693351|gb|ADP96224.1| SAM-dependent methyltransferase [marine bacterium HP15]
          Length = 401

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            VLD+ +  GG   Q   +GA      D S   ++ +  N     L   + IE DAF+  
Sbjct: 226 RVLDVFSYVGGWGIQAACAGATQVTCVDSSAGAIDSVHHNARLNGLDNVETIEGDAFEAL 285

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ FD V++D P      I R           D         +L   G+  ++ 
Sbjct: 286 KALADEKEKFDVVVLDPP----ALIPRRR---------DQKAGEEAYARLNQLGLRLLER 332

Query: 358 GGIVVFSNCSLD 369
            GI+V ++CS+ 
Sbjct: 333 DGILVSASCSMH 344


>gi|164688612|ref|ZP_02212640.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
           16795]
 gi|164603025|gb|EDQ96490.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
           16795]
          Length = 169

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 45  DQILVRAIVNVTLR-FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADY 101
           D+  +   V   LR  +  I+ +++    + S+ R       +L++++A++L  L++ + 
Sbjct: 75  DKAYLTK-VCDILRLRIDDINELIENNTKNWSINRFSKIDLAILQIAIAEMLSDLNIPEK 133

Query: 102 AVVDLAVEQAKRDKENR 118
             ++ A++ AK   E +
Sbjct: 134 VSINQAIDLAKIYCEEK 150


>gi|225574873|ref|ZP_03783483.1| hypothetical protein RUMHYD_02951 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037947|gb|EEG48193.1| hypothetical protein RUMHYD_02951 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 22/131 (16%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRC------NLDRLHLYAEDIIEM 296
            VLD     G       + GA+    +D S+    + R         DR+     D+ E+
Sbjct: 233 RVLDCFTHTGSFALNAALGGARSVLGVDASESGCARARENARLNGMEDRVEFLCADVFEL 292

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V++D P              +T+  + +  +    R++ L+G+  VK
Sbjct: 293 LPQLEQEGEKFDVVILDPPA-------------FTKSRNSVKNAVKGYREINLRGMKLVK 339

Query: 357 PGGIVVFSNCS 367
           PGG +  + CS
Sbjct: 340 PGGYL--ATCS 348


>gi|157871814|ref|XP_001684456.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127525|emb|CAJ05527.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 587

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-- 387
           ++   + + K A  QRKLL   +        VV+S CS+ ++++EEVV++VL    +   
Sbjct: 477 FSMKEERVEKLARLQRKLLAHSLLSFDNCRTVVYSTCSVHEEENEEVVRQVLDDERVKAR 536

Query: 388 -VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
              L  +    WK+   A     E  +R T     + D  +   +GF+     R+
Sbjct: 537 GWRLSNIMPNTWKTRG-AEREGEEHPLRFT----IRCDPATEATNGFYVARFDRV 586


>gi|319901555|ref|YP_004161283.1| NusB antitermination factor [Bacteroides helcogenes P 36-108]
 gi|319416586|gb|ADV43697.1| NusB antitermination factor [Bacteroides helcogenes P 36-108]
          Length = 308

 Score = 43.3 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K  +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFEEKNGANQELLPEFK--------DDEDQEFARRLFRRTILNCDYYRHLISEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  V+ AK     +  +
Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGS 286


>gi|222099858|ref|YP_002534426.1| SAM-dependent methyltransferase [Thermotoga neapolitana DSM 4359]
 gi|221572248|gb|ACM23060.1| SAM-dependent methyltransferase [Thermotoga neapolitana DSM 4359]
          Length = 389

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 74/196 (37%), Gaps = 27/196 (13%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D E W +     ++      L+     +    G   G +  Q  +A + +          
Sbjct: 163 DREGWIYGAGPELIEFEMNGLRF----LADTKGQKTGFFLDQRENAKMVLDFAKDK---V 215

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---- 299
            LD+ +  G   A L+   A+    +D S+R LE  R  L        D I  +AF    
Sbjct: 216 CLDVFSYTGNFAAHLLKGSARHVTLVDYSERSLEIAREILKMNGFENFDTITGNAFDILK 275

Query: 300 -DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 K +D V++D P              + + +  +  +    +++ L+ +  ++  
Sbjct: 276 DFDKSGKKYDLVVLDPPS-------------FAKSSRSLESAKRGYKEINLRAMRILRKP 322

Query: 359 GIVVFSNCS-LDKQDS 373
           GI+V S+C+ +  +++
Sbjct: 323 GILVTSSCTQIVSEET 338


>gi|312877028|ref|ZP_07737001.1| protein of unknown function Met10 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796169|gb|EFR12525.1| protein of unknown function Met10 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 389

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED------IIEMD 297
           VLD     GG T      GA     +D+S   +E+   N     + ++       + +  
Sbjct: 218 VLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESKCEFVVANVFDYL 277

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ +D +++D P              + +    +  +    +++ L+ +  +K 
Sbjct: 278 NELDDKKEKYDMIILDPPA-------------FAKSIHTLENAKRGYKEINLRAMKILKK 324

Query: 358 GGIVVFSNCS 367
           GGI+V  +CS
Sbjct: 325 GGILVTCSCS 334


>gi|312793397|ref|YP_004026320.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180537|gb|ADQ40707.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 389

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED------IIEMD 297
           VLD     GG T      GA     +D+S   +E+   N     + ++       + +  
Sbjct: 218 VLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESKCEFVVANVFDYL 277

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ +D +++D P              + +    +  +    +++ L+ +  +K 
Sbjct: 278 NELDDKKEKYDMIILDPPA-------------FAKSIHTLENAKRGYKEINLRAMKILKK 324

Query: 358 GGIVVFSNCS 367
           GGI+V  +CS
Sbjct: 325 GGILVTCSCS 334


>gi|312127719|ref|YP_003992593.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777738|gb|ADQ07224.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 389

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED------IIEMD 297
           VLD     GG T      GA     +D+S   +E+   N     + ++       + +  
Sbjct: 218 VLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESKCEFVVANVFDYL 277

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ +D +++D P              + +    +  +    +++ L+ +  +K 
Sbjct: 278 NELDDKKEKYDMIILDPPA-------------FAKSIHTLENAKRGYKEINLRAMKILKK 324

Query: 358 GGIVVFSNCS 367
           GGI+V  +CS
Sbjct: 325 GGILVTCSCS 334


>gi|50365148|ref|YP_053573.1| transcription termination factor [Mesoplasma florum L1]
 gi|50363704|gb|AAT75689.1| transcription termination factor [Mesoplasma florum L1]
          Length = 134

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 10/116 (8%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           M      R     +    +     +   +  +  D     L          I N     L
Sbjct: 8   MTKR---RTYLVQMFYRYLLMNNDVNY-IKQDILDETQEKLDVE----TTLIANNIAEKL 59

Query: 61  PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114
             +   +   L       R    +Q +L +   +I++        ++  V   K +
Sbjct: 60  SDLKKEIIKHLSANWKWERIPTYIQSILIIGAYEIIFTPTPKAVTINELVNLVKEN 115


>gi|291541322|emb|CBL14433.1| SAM-dependent methyltransferase [Roseburia intestinalis XB6B4]
          Length = 403

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 244 SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD     G       ++GA  VT LD+S+  +++   N  R  L        D   + 
Sbjct: 224 KVLDCFTHMGTFALNAGIAGAADVTGLDISEYAVQQANENARRNGLE-------DTVHFR 276

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
              + D +   A       +       +T+       +    R++ ++G+  VK GG + 
Sbjct: 277 CANVLDELPKLAQSGEQYDVVILDPPAFTKSRQATKNAIKGYREINMKGLKLVKDGGYL- 335

Query: 363 FSNCS 367
            + CS
Sbjct: 336 -ATCS 339


>gi|291534480|emb|CBL07592.1| SAM-dependent methyltransferase [Roseburia intestinalis M50/1]
          Length = 415

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 244 SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD     G       ++GA  VT LD+S+  +++   N  R  L        D   + 
Sbjct: 236 KVLDCFTHMGTFALNAGIAGAADVTGLDISEYAVQQANENARRNGLE-------DTVHFR 288

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
              + D +   A       +       +T+       +    R++ ++G+  VK GG + 
Sbjct: 289 CANVLDELPKLAQSGEQYDVVILDPPAFTKSRQATKNAIKGYREINMKGLKLVKDGGYL- 347

Query: 363 FSNCS 367
            + CS
Sbjct: 348 -ATCS 351


>gi|240145244|ref|ZP_04743845.1| methyltransferase [Roseburia intestinalis L1-82]
 gi|257202707|gb|EEV00992.1| methyltransferase [Roseburia intestinalis L1-82]
          Length = 403

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 244 SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD     G       ++GA  VT LD+S+  +++   N  R  L        D   + 
Sbjct: 224 KVLDCFTHMGTFALNAGIAGAADVTGLDISEYAVQQANENARRNGLE-------DTVHFR 276

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
              + D +   A       +       +T+       +    R++ ++G+  VK GG + 
Sbjct: 277 CANVLDELPKLAQSGEQYDVVILDPPAFTKSRQATKNAIKGYREINMKGLKLVKDGGYL- 335

Query: 363 FSNCS 367
            + CS
Sbjct: 336 -ATCS 339


>gi|163755270|ref|ZP_02162390.1| putative N utilization substance protein [Kordia algicida OT-1]
 gi|161324690|gb|EDP96019.1| putative N utilization substance protein [Kordia algicida OT-1]
          Length = 302

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP-----RKKYSLQQLLRVSVAQIL-Y 95
              D++ VR +   T+      D +L   +    P     R       LL++++ ++L +
Sbjct: 194 DDEDKVFVRDLFRKTVLN----DEMLTAEIQGKTPNWDKDRIANLDLILLKMAICELLKF 249

Query: 96  LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
             +     ++  +E AK    ++  +  VN IL ++ +E 
Sbjct: 250 PSIPAKVTINEYIELAKEYSTSKS-SMFVNGILDKLIKEY 288


>gi|189462539|ref|ZP_03011324.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136]
 gi|189430700|gb|EDU99684.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136]
          Length = 308

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + DQ   R +   ++        ++     +  L R       ++++++A+IL + ++ 
Sbjct: 205 DEEDQDFARRLFRRSILNADYYRHLISENSKNWDLDRVAVMDVIIMQIALAEILSFPNIP 264

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
               ++  VE AK     +     +N  L 
Sbjct: 265 INVSLNEYVEIAKLYSTPKS-GGFINGTLD 293


>gi|146319474|ref|YP_001199186.1| transcription termination factor [Streptococcus suis 05ZYH33]
 gi|145690280|gb|ABP90786.1| Transcription termination factor [Streptococcus suis 05ZYH33]
          Length = 64

 Score = 43.0 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 81  SLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139
             + ++R+ + +IL + +  D   V+ A+E AK    +   AK VN +L +  + +  + 
Sbjct: 2   IDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEF-SDESSAKFVNGVLSQFIKARSLMS 60

Query: 140 QRI 142
              
Sbjct: 61  FFF 63


>gi|312963653|ref|ZP_07778134.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
 gi|311282162|gb|EFQ60762.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
          Length = 398

 Score = 43.0 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +         E 
Sbjct: 223 RVLDLYSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGVAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKASEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|229593165|ref|YP_002875284.1| hypothetical protein PFLU5795 [Pseudomonas fluorescens SBW25]
 gi|229365031|emb|CAY53198.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 398

 Score = 43.0 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +         E 
Sbjct: 223 RVLDLYSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGVAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKASEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|256425201|ref|YP_003125854.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
 gi|256040109|gb|ACU63653.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
          Length = 309

 Score = 43.0 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 38  FRLLSQRDQ-ILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQ-IL 94
           F  L  R++    R ++   L        ++   L +    R       L+ + V + + 
Sbjct: 196 FLQLISREKLEYARELLLTVLDKKEYCLELIKPKLQNWDPERIAAVDMLLMEMGVCEFLY 255

Query: 95  YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
           +  +     ++  ++ AK     +   + VN IL  
Sbjct: 256 FPTIPTKVTINEYIDLAKAYSTPQS-GQFVNGILDN 290


>gi|94496504|ref|ZP_01303081.1| 3-demethylubiquinone-9 3-methyltransferase [Sphingomonas sp. SKA58]
 gi|94424250|gb|EAT09274.1| 3-demethylubiquinone-9 3-methyltransferase [Sphingomonas sp. SKA58]
          Length = 248

 Score = 43.0 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 35/193 (18%)

Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288
           +A   +          +LDL    G  +      G +VT  D++   +   R N     +
Sbjct: 37  AAIGFIMRLLPPPPARILDLGCGGGWTSIFYARLGYQVTGQDIAPDMIAVARDNARINDV 96

Query: 289 -YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
               D +  D         +DA +                        D +  A  +   
Sbjct: 97  GSRTDFLCGDFEHMELGAQYDAAIFF----------------------DSLHHAEDEALA 134

Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSSPIPVELVPLNSAYWKSIDMA 404
           +      +KPGGI++    + +  +           +    +    +P +    +  D  
Sbjct: 135 IHAAWRALKPGGILI----THEPGEGHSQSAESIAAMARFGVNERDMPPHLIMARGRDAG 190

Query: 405 MALSPEGWIRITP 417
                    R+ P
Sbjct: 191 FT-----GFRVLP 198


>gi|329955547|ref|ZP_08296455.1| transcription antitermination factor NusB [Bacteroides clarus YIT
           12056]
 gi|328525950|gb|EGF52974.1| transcription antitermination factor NusB [Bacteroides clarus YIT
           12056]
          Length = 308

 Score = 43.0 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 19  MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPR 77
             ++      L  E+           DQ   R +   T+        ++     +  L R
Sbjct: 189 FDEKNGANQALLPEFK-------DDEDQEFARRLFRRTILNCDYYRHLISENTRNWDLDR 241

Query: 78  KKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +    +++ ++A+IL + ++     ++  V+ AK     +  +
Sbjct: 242 VAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTTKSGS 286


>gi|257783882|ref|YP_003179099.1| SAM-dependent methyltransferase [Atopobium parvulum DSM 20469]
 gi|257472389|gb|ACV50508.1| SAM-dependent methyltransferase [Atopobium parvulum DSM 20469]
          Length = 439

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 3/127 (2%)

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300
             VLD     G         GA      DVS+  ++  R N +   L    D    +  +
Sbjct: 259 HRVLDCFCHVGPFGLNATAGGADFVRCVDVSQTAIDLARQNAELNGLADRIDFTCANVLE 318

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
           Y P+   D   + A       I   P   +T+  D +  +    +++    +  +  GG 
Sbjct: 319 YLPELARDRTQLKAEGGPFDLIILDPPA-FTKTRDKVRSAMRGYKEINATAMKLLPRGGY 377

Query: 361 VVFSNCS 367
           +   +CS
Sbjct: 378 LATCSCS 384


>gi|148241109|ref|YP_001226266.1| transcription antitermination protein NusB [Synechococcus sp.
           RCC307]
 gi|147849419|emb|CAK26913.1| Transcription termination factor, NusB [Synechococcus sp. RCC307]
          Length = 203

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 25  LTCLLDLEYGDSAFRLL----SQRD-QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRK 78
              +L+       +  L     Q+D +              P++D  +D V+    L R 
Sbjct: 86  SEQVLNRLSSSLEYPRLLQLADQQDLRHWALLRAKAVAEAQPQLDQGIDAVMEGWRLTRL 145

Query: 79  KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131
               Q +LR++V +I           + AVE A R   +    +++N +LRR 
Sbjct: 146 PRIDQDILRLAVVEIDEFQTPAAVACNEAVELAHRY-SDEAGRRMINGVLRRY 197


>gi|253572755|ref|ZP_04850155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384353|ref|ZP_06993913.1| NusB family protein [Bacteroides sp. 1_1_14]
 gi|251837655|gb|EES65746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262632|gb|EFI05496.1| NusB family protein [Bacteroides sp. 1_1_14]
          Length = 308

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K  +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFEEKNGANQELLPEFK--------DDEDQEFARRLFRRTILNADYYRHLVSEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK     +  +
Sbjct: 234 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGS 286


>gi|189218035|ref|YP_001938677.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
 gi|189184893|gb|ACD82078.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
          Length = 399

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 73/222 (32%), Gaps = 23/222 (10%)

Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261
              L  +    + +  +      +    A+    +        VLD  +  G  +     
Sbjct: 186 CRHLVCMEGIPILVDLYNGQKTGLYLDQAANYKFISQIAKGKRVLDCFSYQGLFSIFCAR 245

Query: 262 SG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD----YCPKKLFDAVLVDAPC 316
            G     A+D S   ++  + N  +L L  E + E            K+ FD +++D P 
Sbjct: 246 GGAQCCVAVDQSAAAIDIGKENASQLGLQIEWVCENAFDWLRKKEREKEKFDLIILDPPS 305

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS--LDKQDSE 374
                        +T+       +     ++ L+ +  +  GG +    CS  +  ++ +
Sbjct: 306 -------------FTKTKVQKESAFRGYHEIHLRALRLLDSGGFLASFCCSHHITMEEWK 352

Query: 375 EVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWI 413
           E++ +    +   +     +P +  +    ++      +G +
Sbjct: 353 ELISRACWETSSRLRYLGCLPQSPDHPILFNIPETEYLKGVL 394


>gi|79332665|ref|NP_001032160.1| unknown protein [Arabidopsis thaliana]
 gi|332010789|gb|AED98172.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 323

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDDIVKSACFQRKLLLQGISFVK 356
           +D VLVDA C+  G+I+       W                      Q  LL  G   +K
Sbjct: 253 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 312

Query: 357 PGGIVVFSNC 366
             G +V+S C
Sbjct: 313 EAGTLVYSTC 322


>gi|121535706|ref|ZP_01667510.1| protein of unknown function Met10 [Thermosinus carboxydivorans
           Nor1]
 gi|121305737|gb|EAX46675.1| protein of unknown function Met10 [Thermosinus carboxydivorans
           Nor1]
          Length = 393

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 245 VLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNL------DRLHLYAEDIIEMD 297
           VLD     G       V G  +V A+D+S+  +E  R N       DR      +  +  
Sbjct: 222 VLDCFCHTGSFAVHAAVYGAKRVQAIDISEMAIELARKNAALNGVADRCSFEVANAFDAL 281

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 ++ FD V++D P              +T+    +  +A   +++ L+G+  V+ 
Sbjct: 282 RELSDERRQFDIVILDPPA-------------FTKSRGTLESAARGYKEINLRGLKLVRS 328

Query: 358 GGIVVFSNCSLDKQ 371
           GG ++  +CS   +
Sbjct: 329 GGFLITCSCSYHME 342


>gi|313898494|ref|ZP_07832031.1| putative 23S rRNA m5C1962 methyltransferase [Clostridium sp. HGF2]
 gi|312956876|gb|EFR38507.1| putative 23S rRNA m5C1962 methyltransferase [Clostridium sp. HGF2]
          Length = 400

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 19/140 (13%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA----EDII 294
            +   V+D  +  GG          ++V A+DVS+  L++   N    HL          
Sbjct: 226 AHGKRVMDCFSHTGGFALNAAYGNASQVVAVDVSQTALDQAYANAKLNHLENRISFVKAD 285

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
                D C +  FD +++D P              +T+    I  +    +++  Q +  
Sbjct: 286 VFKYLDTCKEGQFDIIVLDPPA-------------FTKSRRTIDHAYSGYKRINKQAMML 332

Query: 355 VKPGGIVVFSNCS-LDKQDS 373
           +  GG ++  +CS   + ++
Sbjct: 333 LGRGGYLITCSCSRFMEIEN 352


>gi|126664007|ref|ZP_01735001.1| putative N utilization substance protein [Flavobacteria bacterium
           BAL38]
 gi|126623956|gb|EAZ94650.1| putative N utilization substance protein [Flavobacteria bacterium
           BAL38]
          Length = 302

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 42  SQRDQILVRAIVN-VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+  V+ +     L  +      +D      + R       +L++++ ++L +  + 
Sbjct: 194 DEDDKDFVKNLFRRTVLNEVELSKEYIDKTPNWDVERIAEIDTIILKMAICELLKFPSIP 253

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
               ++  +E AK     +  +  +N IL  
Sbjct: 254 TKVTINEYLEIAKEYSTPKS-SIFINGILDN 283


>gi|126666733|ref|ZP_01737710.1| hypothetical protein MELB17_19806 [Marinobacter sp. ELB17]
 gi|126628778|gb|EAZ99398.1| hypothetical protein MELB17_19806 [Marinobacter sp. ELB17]
          Length = 398

 Score = 42.6 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            VLD+ +  GG   Q   +GA      D S   +E +  N     L   D IE DAFD  
Sbjct: 223 RVLDVFSYVGGWGIQAASAGATSVTCIDSSASAIESVHHNARLNGLTNVDTIEGDAFDAL 282

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ FD V++D P      I R           D         +L   G+  ++ 
Sbjct: 283 KALADEKQKFDIVVLDPP----ALIPRRR---------DQKAGEQAYARLNQLGLRLLER 329

Query: 358 GGIVVFSNCSLD 369
            G++V ++CS+ 
Sbjct: 330 DGLLVSASCSMH 341


>gi|187736305|ref|YP_001878417.1| PUA domain containing protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426357|gb|ACD05636.1| PUA domain containing protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 433

 Score = 42.6 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 244 SVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKL----RCNLDRLHLYAEDIIEMD 297
           +VLDLC   GG +    + G   +VTA+D+ ++ +         N  R+     D     
Sbjct: 262 TVLDLCCYSGGFSIAAKMLGGAAEVTAVDLDEKAVAMAKRNGNINRQRIDFVHADAFVYA 321

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  +LFDAVL+D P              +    D   +       L + G+  V+P
Sbjct: 322 RQMVRNGRLFDAVLLDPP-------------KFIVGRDGYEEGIKKYHDLNMLGLQCVRP 368

Query: 358 GGIVVFSNCS--LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
           GG+ V  +CS  L   + E  V K  +     ++++ +    W   
Sbjct: 369 GGLFVTCSCSGLLSPAEFEHTVIKAAQRQGRKLQIMAMTGPGWDHP 414


>gi|29349999|ref|NP_813502.1| putative nitrogen utilization substance protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341910|gb|AAO79696.1| putative nitrogen utilization substance protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 260

 Score = 42.6 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K  +   LL               DQ   R +   T+        ++   
Sbjct: 134 VLKTIKRFEEKNGANQELLPEFK--------DDEDQEFARRLFRRTILNADYYRHLVSEN 185

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK     +  +
Sbjct: 186 TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGS 238


>gi|145219787|ref|YP_001130496.1| SAM-dependent methyltransferase [Prosthecochloris vibrioformis DSM
           265]
 gi|145205951|gb|ABP36994.1| SAM-dependent methyltransferase [Chlorobium phaeovibrioides DSM
           265]
          Length = 393

 Score = 42.6 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 24/146 (16%)

Query: 244 SVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----- 297
            VLD+    GG     + +G      +D S+  L++   N          +I  D     
Sbjct: 221 RVLDVFTNDGGFGLNALAAGAGSAILVDASEDALKRAEHNAKLNGYDNFSLIADDAFNIL 280

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ FD V++D P              +T+   ++  +    RKL   G+  VK 
Sbjct: 281 QQMIDAKESFDLVILDPPS-------------FTKSRKNVPGALKAYRKLNQMGLQLVKK 327

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRS 383
           GG +  ++CS    +     +  L+S
Sbjct: 328 GGFLATASCSHHVAE-----EDFLQS 348


>gi|198277117|ref|ZP_03209648.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135]
 gi|198269615|gb|EDY93885.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135]
          Length = 308

 Score = 42.6 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + DQ   R +   ++        ++     +  L R       ++++++A+IL + ++ 
Sbjct: 205 DEEDQDFARRLFRRSILNADYYRHLISENSKNWDLSRVAVMDVIIMQIALAEILSFPNIP 264

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
               ++  VE AK     +     +N  L 
Sbjct: 265 VNVSLNEYVEIAKLYSTPKS-GGFINGTLD 293


>gi|268317361|ref|YP_003291080.1| modification methylase, HemK family [Rhodothermus marinus DSM 4252]
 gi|262334895|gb|ACY48692.1| modification methylase, HemK family [Rhodothermus marinus DSM 4252]
          Length = 304

 Score = 42.6 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 12/146 (8%)

Query: 244 SVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE---MDA 298
            VLD+    G      +   S A V A D+S   L   R N +RL L    +      D+
Sbjct: 130 RVLDVGTGSGCIALAIKHHRSDADVWACDISPEALSIARRNAERLGLQVHWVEADVLADS 189

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT----DDIVKSACFQRKLLLQGISF 354
           F       FD ++ + P  +       P  +   +             F R L   G   
Sbjct: 190 FPENVPGPFDLIVSNPPYLALHEADELPPEVRDYEPPVALYAGEDPLRFYRALARHGHVL 249

Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKV 380
           +KPGG +    C +      +VV   
Sbjct: 250 LKPGGRLA---CEVHAHYGTDVVALF 272


>gi|326801392|ref|YP_004319211.1| NusB antitermination factor [Sphingobacterium sp. 21]
 gi|326552156|gb|ADZ80541.1| NusB antitermination factor [Sphingobacterium sp. 21]
          Length = 315

 Score = 42.6 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYA 102
           D+  +  +  +T R        +     +    R       L+R+++ ++L +  +    
Sbjct: 209 DKEFIVDLFRLTTRHGEDYQIYISGKTKNWEADRIALIDTLLMRMAITELLNFSSIPVKV 268

Query: 103 VVDLAVEQAKRDKENRHFA 121
            ++  +E +K     +  +
Sbjct: 269 TINEYIEISKEFSTPKSNS 287


>gi|325295579|ref|YP_004282093.1| hypothetical protein Dester_1403 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066027|gb|ADY74034.1| protein of unknown function Met10 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 399

 Score = 42.6 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 21/155 (13%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLR 280
           +++      +            VLD     GG      V G   +V A+D S+  L+  +
Sbjct: 201 YFLDQRENKLLFAKEFVKEGDRVLDAFCHLGGFGIHAAVIGKAKEVVAVDSSQLALDLAK 260

Query: 281 CNLDRLHLYAEDIIEMDA------FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
            N     +  +                   + FD++++D P              + +  
Sbjct: 261 ENAKLNGVADKFQFVKGDAFKVLKRMQQEGEKFDSIVIDPPA-------------FAKSK 307

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
             + ++    ++L L+G+  +KPGG +V  +CS  
Sbjct: 308 TVVEQAKRGYKELFLRGLKMLKPGGNIVVCSCSHH 342


>gi|115963589|ref|XP_001179739.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein,
           partial [Strongylocentrotus purpuratus]
          Length = 302

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 21/133 (15%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272
              Q++ + IP  L     +  VLD+CAAPG KT                   V   D  
Sbjct: 162 ISRQESVSMIPPLLLQVKPHHKVLDMCAAPGSKTAQLIEMLHAEQTFGWPEGFVIGNDDD 221

Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAPCSSTGT 321
            +R   +     RL+     ++  DA  +   ++           +D +L D PC   GT
Sbjct: 222 NKRCYIMVHQAKRLNSPCCMVVNHDASVFPRLQVPGPNGEMTNIEYDRILCDVPCGGDGT 281

Query: 322 IRRHPDVLWTRDT 334
           +R++  +      
Sbjct: 282 MRKNCAIWKKWTP 294


>gi|70733157|ref|YP_262930.1| hypothetical protein PFL_5872 [Pseudomonas fluorescens Pf-5]
 gi|68347456|gb|AAY95062.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 398

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKASEERFDVIVADPPA-------------FIKRKKDLKNGEGAYRRLNEQAMRLLN 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|296124262|ref|YP_003632040.1| hypothetical protein Plim_4030 [Planctomyces limnophilus DSM 3776]
 gi|296016602|gb|ADG69841.1| protein of unknown function Met10 [Planctomyces limnophilus DSM
           3776]
          Length = 552

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 18/130 (13%)

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
             VLDLC   GG      VSGAK    +D+ +  +   + N     +  E          
Sbjct: 351 QRVLDLCCYSGGFALSAAVSGAKSVHGVDLDEAAIAVAKKNAKLNKVQIEWAHADIFAWM 410

Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + +D V++D P                R  DD          +     S V P
Sbjct: 411 REAQKQGQQWDIVVLDPP-------------KLIRTRDDYEDGRKKYFDMNRLAASLVSP 457

Query: 358 GGIVVFSNCS 367
           GG+++  +CS
Sbjct: 458 GGMLITCSCS 467


>gi|218295004|ref|ZP_03495840.1| conserved hypothetical protein [Thermus aquaticus Y51MC23]
 gi|218244207|gb|EED10732.1| conserved hypothetical protein [Thermus aquaticus Y51MC23]
          Length = 381

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--- 300
             LD+ +  GG    L +   +V A+D SK  L +   N     L  + +          
Sbjct: 212 RALDVFSYAGGFALHLALGFKEVVAVDSSKEALARAEENARLNGLALKTVEANAFDYLRA 271

Query: 301 -YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                + FD +++D P              + +   D+ ++    +++ L+ I  +K GG
Sbjct: 272 LERAGERFDLIVLDPPA-------------FAKGKKDLERAYRAYKEVNLRAIKLLKEGG 318

Query: 360 IVVFSNCSLDKQD 372
           I+  ++CS    +
Sbjct: 319 ILATASCSHHLTE 331


>gi|261749509|ref|YP_003257195.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497602|gb|ACX84052.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 312

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQ-ILYLDVA 99
           +  ++  + ++   T+      + ++  +  +  + R       +L++++ + + + ++ 
Sbjct: 204 NDENKKFIVSLYRNTIFHKREFNELISNISNNWNIERIAIIDLIILQMAICEFLYFPNIP 263

Query: 100 DYAVVDLAVEQAKRDKENRH 119
             A ++  +E AK    ++ 
Sbjct: 264 PKATMNEYIEIAKIFCMDKS 283


>gi|304382450|ref|ZP_07364948.1| NusB family protein [Prevotella marshii DSM 16973]
 gi|304336403|gb|EFM02641.1| NusB family protein [Prevotella marshii DSM 16973]
          Length = 329

 Score = 42.6 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              D+     +   T+    +    +     +    R  Y    ++++++A++L + ++ 
Sbjct: 204 DPEDKAFACKLFRATILNADQYQHYMSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIP 263

Query: 100 DYAVVDLAVEQAKRDKENRHFA 121
               ++  VE AK     +  A
Sbjct: 264 ISVTINEYVELAKLYSTPKSGA 285


>gi|325681112|ref|ZP_08160642.1| putative 23S rRNA m5C1962 methyltransferase [Ruminococcus albus 8]
 gi|324107034|gb|EGC01320.1| putative 23S rRNA m5C1962 methyltransferase [Ruminococcus albus 8]
          Length = 409

 Score = 42.2 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDY 301
            VLD     G       + GA+   A+DVS+  ++  + N +R  L  +   +  D FD 
Sbjct: 237 RVLDCFTHTGSFALNAAMGGAEHVTAVDVSQFAVDTAKANAERNGLSDKMDFVCADVFDL 296

Query: 302 CPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            PK       +D V++D P              +T+    +  +    +++  + +  + 
Sbjct: 297 LPKLAEEKAGYDFVILDPPA-------------FTKSRKTVNSAERGYKEINYRAMKLLP 343

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404
            GG +   +CS     ++  V+ ++ ++      + L  A  +  D  
Sbjct: 344 RGGYLATCSCS-HFMRNDLFVKMLMSAAKDAGVRLKLVEARQQGPDHP 390


>gi|72383173|ref|YP_292528.1| transcription antitermination protein NusB [Prochlorococcus marinus
           str. NATL2A]
 gi|72003023|gb|AAZ58825.1| antitermination protein NusB [Prochlorococcus marinus str. NATL2A]
          Length = 208

 Score = 42.2 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 29  LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLR 87
           L         + +    + L    V++ +     ID  LD V+    L R       +LR
Sbjct: 100 LPRLLALVDQKEI----RELALRRVDLVIEKQDEIDHKLDSVMEGWRLKRLPRIDSDILR 155

Query: 88  VSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
           ++   ++  +       + AV  A R  + + 
Sbjct: 156 LAWVDLIDFNTPMAVTCNEAVNLANRYSDEQG 187


>gi|153807762|ref|ZP_01960430.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185]
 gi|149129371|gb|EDM20585.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185]
          Length = 308

 Score = 42.2 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K+ +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFDEKKGANQELLPEFK--------DDEDQEFARRLFRRTILNSDYYRHLVSEN 233

Query: 71  LISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK    ++  +
Sbjct: 234 TKNWELDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGS 286


>gi|293370796|ref|ZP_06617342.1| transcription antitermination factor NusB [Bacteroides ovatus SD
           CMC 3f]
 gi|292634156|gb|EFF52699.1| transcription antitermination factor NusB [Bacteroides ovatus SD
           CMC 3f]
          Length = 308

 Score = 42.2 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K+ +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFDEKKGANQELLPEFK--------DDEDQEFARRLFRRTILNSDYYRHLVSEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK     +  +
Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGS 286


>gi|332796925|ref|YP_004458425.1| putative RNA methylase [Acidianus hospitalis W1]
 gi|332694660|gb|AEE94127.1| putative RNA methylase [Acidianus hospitalis W1]
          Length = 310

 Score = 42.2 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
           ++LD  A  G    +    G      D+  + +EK + NL   +   + I E  +     
Sbjct: 163 TILDPFAGVGSILIEASWLGYNCIGGDIDSKMIEKTKYNLKHFNYECQIIQEDISNLPIK 222

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +   DA++ D P        R  +    +              L       +K GG +VF
Sbjct: 223 ENSVDAIVTDPP------YGRSVNARDVK-------FDELYESLFFNSAEVLKKGGKLVF 269

Query: 364 SN 365
           + 
Sbjct: 270 AT 271


>gi|237713467|ref|ZP_04543948.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407253|ref|ZP_06083801.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644674|ref|ZP_06722424.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC
           2a]
 gi|294809065|ref|ZP_06767787.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298482673|ref|ZP_07000857.1| NusB family protein [Bacteroides sp. D22]
 gi|229446449|gb|EEO52240.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354061|gb|EEZ03153.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640008|gb|EFF58276.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC
           2a]
 gi|294443790|gb|EFG12535.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087143|emb|CBK68666.1| transcription antitermination factor NusB [Bacteroides
           xylanisolvens XB1A]
 gi|298271136|gb|EFI12713.1| NusB family protein [Bacteroides sp. D22]
          Length = 308

 Score = 42.2 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K+ +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFDEKKGANQELLPEFK--------DDEDQEFARRLFRRTILNSDYYRHLVSEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK     +  +
Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGS 286


>gi|147825452|emb|CAN73239.1| hypothetical protein VITISV_035335 [Vitis vinifera]
          Length = 479

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401
           +V+S CSL+   +E  V ++L     P++LV ++  + + +
Sbjct: 1   MVYSTCSLNPVKNEAAVSEILWKCGKPIKLVDVSCKFPRLV 41


>gi|94499740|ref|ZP_01306276.1| hypothetical protein RED65_14502 [Oceanobacter sp. RED65]
 gi|94427941|gb|EAT12915.1| hypothetical protein RED65_14502 [Oceanobacter sp. RED65]
          Length = 397

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 25/203 (12%)

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVS--LPGFAEGVWWVQDASASIPVQLFGTL 240
              +E     +         + L E      +  + G   G ++    +     QL    
Sbjct: 162 MRSLEGLDEYVECADDIPHMLPLMENGTRFEAPVIEGQKTGWFYDHRLNRQRVNQLVK-- 219

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMD- 297
               VLD+C+  GG   Q    GA +V  +D S++ L+ ++ N +   +      I+ D 
Sbjct: 220 -GKRVLDICSYIGGWGVQAAHHGAAEVVCVDASQQALDWVKHNAELNGVAEKVSTIKGDA 278

Query: 298 ----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
                     ++ FD V++D P              +     DI        K+   G+ 
Sbjct: 279 FKVMEQLQEQQEQFDVVILDPPA-------------FIPKRKDIGPGERAYGKMNQLGMR 325

Query: 354 FVKPGGIVVFSNCSLDKQDSEEV 376
            +K  G +V ++CS+   ++  V
Sbjct: 326 LLKHEGFLVSASCSMHLDETRLV 348


>gi|182414387|ref|YP_001819453.1| oxidoreductase [Opitutus terrae PB90-1]
 gi|177841601|gb|ACB75853.1| oxidoreductase [Opitutus terrae PB90-1]
          Length = 413

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLD----RLHLYAEDIIEMD 297
            VLDLC   GG +    V+G   +VT++D+ +  + + + N +    RL     D     
Sbjct: 240 RVLDLCCYTGGFSLNAKVAGGAEEVTSVDLDEAAIAQAKRNANLNQARLKFVHADAFAYA 299

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + +D V++D P             ++TRD     +       L L  IS VKP
Sbjct: 300 RQMQQNGEKWDVVVLDPP-----------KFIFTRDDHGNWEGRQKYEDLNLLAISLVKP 348

Query: 358 GGIVVFSNCS-LDKQDS--EEVVQKVLRSS 384
           GGI V  +CS L   +   + V++   R +
Sbjct: 349 GGIFVTCSCSGLLSLEDFEQHVIKAAHRQN 378


>gi|330443798|ref|YP_004376784.1| hypothetical protein G5S_0047 [Chlamydophila pecorum E58]
 gi|328806908|gb|AEB41081.1| conserved hypothetical protein [Chlamydophila pecorum E58]
          Length = 154

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R +   +L  +     +   L+ L   ++           + +  V + LR+  +
Sbjct: 7   PRQKMREIVLQMLYALGVDPSAEEGLVPLLMAET----------AVAQKHVFLALRYSKQ 56

Query: 63  -------IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113
                  +DA++   + + S        + +LR+++ + LY   +    ++  A    K+
Sbjct: 57  VLEKSSELDALISQTVKTTSFENLNLMEKNILRLTLFEYLYGGPIPSSILIAEASRLIKK 116

Query: 114 D 114
            
Sbjct: 117 F 117


>gi|329961415|ref|ZP_08299538.1| transcription antitermination factor NusB [Bacteroides fluxus YIT
           12057]
 gi|328531892|gb|EGF58715.1| transcription antitermination factor NusB [Bacteroides fluxus YIT
           12057]
          Length = 308

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K+ +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFEEKKGANQELLPEFK--------DDEDQEFARRLFRRTILNCDYYRHLISEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  V+ AK     +  +
Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTVKSGS 286


>gi|309776642|ref|ZP_07671618.1| methyltransferase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915602|gb|EFP61366.1| methyltransferase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 400

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMDA 298
            V+D  +  GG           +V A+DVS+  L++   N     L              
Sbjct: 230 RVMDCFSHTGGFALNAAYGNAQQVVAVDVSQTALDQAYENAKLNQLENRISFVKADVFKY 289

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
            D C +  FD +++D P              +T+    I  +    +++  + +  +  G
Sbjct: 290 LDACEEGQFDIIILDPPA-------------FTKSRRTIDHAYNGYKRINKKAMKLLGRG 336

Query: 359 GIVVFSNCSLDKQ 371
           G ++  +CS   +
Sbjct: 337 GYLITCSCSRFME 349


>gi|156356064|ref|XP_001623751.1| predicted protein [Nematostella vectensis]
 gi|156210479|gb|EDO31651.1| predicted protein [Nematostella vectensis]
          Length = 549

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 361 VVFSNCSLDKQDSEEVVQKVLR-------SSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
           +V+   S+   ++ +VV+K +              +L P      K ++          I
Sbjct: 334 IVYITRSIHTWENIDVVKKAMEEIREAGGKLDSYYDLAPALPNLAKQLEAIGVRRKGEDI 393

Query: 414 RIT---PDMLEKIDGVSSGMDGFFAVALRRLIQP 444
            +T   P         S+ M+G F   L R  +P
Sbjct: 394 SLTSQEPGHNYLKLEPSAAMNGGFVALLTRK-KP 426


>gi|153807280|ref|ZP_01959948.1| hypothetical protein BACCAC_01558 [Bacteroides caccae ATCC 43185]
 gi|149130400|gb|EDM21610.1| hypothetical protein BACCAC_01558 [Bacteroides caccae ATCC 43185]
          Length = 273

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 74/266 (27%), Gaps = 22/266 (8%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            ++   +++     +            P     +    +G  R L         + +D+ 
Sbjct: 2   NILKHSIKKFIYGTLPYYFMKGYKPDSPYLKYYKYIRKHGYSRHLYEFKDEYLSMPVDVR 61

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFGTL 240
              +       L  V+   G     +       +   +   +      SA         +
Sbjct: 62  KDENRN-----LYYVLKEDGKRLYFQRTTPPHKIQKYYRALMIEQDQRSAHHYFNNNKDV 116

Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
                +D+  A G  + ++I     V   + ++  LE +R   +        + +  +  
Sbjct: 117 TGKVFVDVGCAEGYSSLEIIEEAKHVYLFEQNESWLEAIRATFEPWKDKVTIVQKYVSNR 176

Query: 301 YCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
             PK +  D    D P            +    D +   + A    + L +         
Sbjct: 177 NSPKEQKLDDFFRDKP---------DEHLFIKMDIEGAERRALAGCEQLFRDCK------ 221

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSP 385
            + F+ C+    D EEV+   L    
Sbjct: 222 KIDFAICTYHLHDDEEVISAFLDKHN 247


>gi|293400615|ref|ZP_06644760.1| transcription antitermination factor NusB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305641|gb|EFE46885.1| transcription antitermination factor NusB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 126

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61
           S    R  +   L            LL+ +  ++ F      +    +  +    +++  
Sbjct: 4   SRHELREKAMTCLYQHF--------LLNKDIKETVFENNDSNEIDPFLYTVTIDAIKYEE 55

Query: 62  RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119
               +++  L    +  R  Y  + +L ++  ++         V++ AV  AK+  +   
Sbjct: 56  DYIQMINEALREDWTFERLGYVEKAILIMAACELDMEIAPKPIVINEAVTLAKKYCDEET 115

Query: 120 FA 121
           + 
Sbjct: 116 YK 117


>gi|255524020|ref|ZP_05390982.1| protein of unknown function Met10 [Clostridium carboxidivorans P7]
 gi|296186877|ref|ZP_06855278.1| Met-10+ like-protein [Clostridium carboxidivorans P7]
 gi|255512307|gb|EET88585.1| protein of unknown function Met10 [Clostridium carboxidivorans P7]
 gi|296048591|gb|EFG88024.1| Met-10+ like-protein [Clostridium carboxidivorans P7]
          Length = 391

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 20/131 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMD----- 297
            VLD     G       V+GAK    +D+S+  ++    N     L      E       
Sbjct: 219 DVLDCFTHTGSFALNAGVAGAKSVLGIDISQLAIDDASKNAALNKLSDTVRFECHNAFDV 278

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + +D V++D P              +T+    I  +    +++ L+GI  VK
Sbjct: 279 LHEWAKEGRQYDVVILDPPA-------------FTKSRSTIKSAVRGYKEINLRGIKMVK 325

Query: 357 PGGIVVFSNCS 367
           PGG +V  +CS
Sbjct: 326 PGGFLVTCSCS 336


>gi|240102669|ref|YP_002958978.1| SAM-dependent methyltransferase, putative [Thermococcus
           gammatolerans EJ3]
 gi|239910223|gb|ACS33114.1| SAM-dependent methyltransferase, putative [Thermococcus
           gammatolerans EJ3]
          Length = 455

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 20/139 (14%)

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                + VLD+    GG      V+GA    A+D S   +  ++ N     +        
Sbjct: 270 YVKPGMRVLDVFTYTGGFAIHAAVAGADEVVAVDKSPWAINMVKENAKLNGVEDRMRYIT 329

Query: 297 ------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                         + FD V++D P              + +   D+ +       +   
Sbjct: 330 GSAFPVMEEMIKKGEKFDIVILDPPA-------------FVQHEKDLKRGLRAYFNVNHA 376

Query: 351 GISFVKPGGIVVFSNCSLD 369
           G+  VK GGI+V  +CS  
Sbjct: 377 GLKLVKEGGILVTCSCSQH 395


>gi|312622544|ref|YP_004024157.1| methyltransferase type 12 [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203011|gb|ADQ46338.1| Methyltransferase type 12 [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 389

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLE------KLRCNLDRLHLYAEDIIEMD 297
           +LD     GG T      GA     +D+S   +E      KL     +      ++ +  
Sbjct: 218 ILDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNEVESKCEFVVANVFDYL 277

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ +D +++D P              + +    +  +    +++ L+ +  +K 
Sbjct: 278 NELDDKKEKYDMIILDPPA-------------FAKSIHTLENAKRGYKEINLRAMKILKK 324

Query: 358 GGIVVFSNCS 367
           GGI+V  +CS
Sbjct: 325 GGILVTCSCS 334


>gi|253730921|ref|ZP_04865086.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725342|gb|EES94071.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 53

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 21/74 (28%)

Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427
           +  +++   ++  L+ +                 ++    +PE          ++    +
Sbjct: 1   MLPEENSLQIKAFLQRTADA--------------ELCETGTPE-------QPGKQNLPGA 39

Query: 428 SGMDGFFAVALRRL 441
              DGFF   L + 
Sbjct: 40  EEGDGFFYAKLIKK 53


>gi|222529209|ref|YP_002573091.1| hypothetical protein Athe_1218 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456056|gb|ACM60318.1| protein of unknown function Met10 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 389

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLE------KLRCNLDRLHLYAEDIIEMD 297
           +LD     GG T      GA     +D+S   +E      KL     +      ++ +  
Sbjct: 218 ILDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNEVESKCEFVVANVFDYL 277

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ +D +++D P              + +    +  +    +++ L+ +  +K 
Sbjct: 278 NELDDKKEKYDMIILDPPA-------------FAKSIHTLENAKRGYKEINLRAMKILKK 324

Query: 358 GGIVVFSNCS 367
           GGI+V  +CS
Sbjct: 325 GGILVTCSCS 334


>gi|228469536|ref|ZP_04054529.1| hypothetical protein PORUE0001_0158 [Porphyromonas uenonis 60-3]
 gi|228308886|gb|EEK17561.1| hypothetical protein PORUE0001_0158 [Porphyromonas uenonis 60-3]
          Length = 221

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI-DAVLDFVLISSL 75
            V  +    T   + EY       ++ +D+  V+      L+      D ++  +   S+
Sbjct: 122 QVELRGRDFTLRTEYEYVAPLRNAITPQDRARVKERAYQVLQQEITANDQLIAQIRQRSI 181

Query: 76  PRKKYSLQQLLR 87
            + +  L QLL 
Sbjct: 182 EKLRRWLTQLLL 193


>gi|325858411|ref|ZP_08172573.1| transcription antitermination factor NusB [Prevotella denticola
           CRIS 18C-A]
 gi|325483049|gb|EGC86037.1| transcription antitermination factor NusB [Prevotella denticola
           CRIS 18C-A]
          Length = 359

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+     +   T+         +     +    R  Y    ++++++A++L + ++ 
Sbjct: 204 DEEDRDFAVKLFRATILNADDYQHYMSESSRNWDFSRLAYMDVIIMQIAIAEMLTFPNIP 263

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
               ++  V+ AK           +N +L  ++R  I+  + +     +PE    R  N 
Sbjct: 264 VTVTINEYVDLAK-LYSTPRSGGYINGMLDTIARHLIQTGKMMK---TMPEPRPRRPYND 319

Query: 160 YGKERVLA 167
              +R   
Sbjct: 320 RQADRTPH 327


>gi|270285005|ref|ZP_06194399.1| transcription antitermination protein NusB [Chlamydia muridarum
           Nigg]
 gi|270289028|ref|ZP_06195330.1| transcription antitermination protein NusB [Chlamydia muridarum
           Weiss]
 gi|301336403|ref|ZP_07224605.1| transcription antitermination protein NusB [Chlamydia muridarum
           MopnTet14]
          Length = 162

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 37/124 (29%), Gaps = 8/124 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R +    L  +         L+ L   +     +S+++ +               
Sbjct: 20  PKQKLRELVLQALYALEMAPKGEDSLVSLLMTE---ASVSKKNVLYALMFCKAIRANQSE 76

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKEN 117
           +DA+L+  +  ++L       + +LR+ + +         +    ++       K+    
Sbjct: 77  LDALLNATIRTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTRLIKKFSYV 136

Query: 118 RHFA 121
              +
Sbjct: 137 EGSS 140


>gi|237802338|ref|ZP_04590799.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025195|gb|EGI05251.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 398

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI+V ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILVSASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|15834839|ref|NP_296598.1| transcription antitermination protein NusB [Chlamydia muridarum
           Nigg]
 gi|13878610|sp|Q9PL88|NUSB_CHLMU RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|7190258|gb|AAF39091.1| N utilization substance protein B, putative [Chlamydia muridarum
           Nigg]
          Length = 164

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 37/124 (29%), Gaps = 8/124 (6%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
                R +    L  +         L+ L   +     +S+++ +               
Sbjct: 22  PKQKLRELVLQALYALEMAPKGEDSLVSLLMTE---ASVSKKNVLYALMFCKAIRANQSE 78

Query: 63  IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKEN 117
           +DA+L+  +  ++L       + +LR+ + +         +    ++       K+    
Sbjct: 79  LDALLNATIRTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTRLIKKFSYV 138

Query: 118 RHFA 121
              +
Sbjct: 139 EGSS 142


>gi|283779451|ref|YP_003370206.1| hypothetical protein Psta_1671 [Pirellula staleyi DSM 6068]
 gi|283437904|gb|ADB16346.1| protein of unknown function Met10 [Pirellula staleyi DSM 6068]
          Length = 428

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLD----RLHLYAEDIIEMD 297
           +VLDLC   GG   Q    G  ++V  +D+ +  L+  + N +    R      D     
Sbjct: 241 TVLDLCCYTGGFAVQAKKLGGASEVIGVDLDEEPLKLAKENANLNQVRCRFVQADAFAYM 300

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD V++D P                R   +I +       L    +  V P
Sbjct: 301 RDMQSSGRKFDVVVLDPP-------------KLIRSRAEIEEGTRKHFALNRLAMQLVAP 347

Query: 358 GGIVVFSNC 366
           GG+++   C
Sbjct: 348 GGVMLSCTC 356


>gi|260171339|ref|ZP_05757751.1| putative N utilization substance protein [Bacteroides sp. D2]
 gi|315919650|ref|ZP_07915890.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693525|gb|EFS30360.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 41.8 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K+ +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFDEKKGANQELLPEFK--------DDEDQEFARRLFRRTILNSDYYRHLVSEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK     +  +
Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGS 286


>gi|313887447|ref|ZP_07821136.1| hypothetical protein HMPREF9294_0724 [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923089|gb|EFR33909.1| hypothetical protein HMPREF9294_0724 [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 225

 Score = 41.8 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI-DAVLDFVLISSL 75
            V  +    T   + EY       ++ +D+  V+      L+      D ++  +   S+
Sbjct: 132 QVELRGRDFTLRTEYEYVAPLRNPITPQDRARVKDRAYQVLQQEITSNDQLIAQIRQRSI 191

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106
            + +  L QLL     ++         V+  
Sbjct: 192 EKLRRWLTQLLLS--YEL-----PPTVVIVE 215


>gi|160887367|ref|ZP_02068370.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483]
 gi|237722651|ref|ZP_04553132.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299148943|ref|ZP_07042005.1| NusB family protein [Bacteroides sp. 3_1_23]
 gi|156107778|gb|EDO09523.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483]
 gi|229448461|gb|EEO54252.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298513704|gb|EFI37591.1| NusB family protein [Bacteroides sp. 3_1_23]
          Length = 308

 Score = 41.8 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K+ +   LL               DQ   R +   T+        ++   
Sbjct: 182 VLKTIKRFDEKKGANQELLPEFK--------DDEDQEFARRLFRRTILNSDYYRHLVSEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK     +  +
Sbjct: 234 TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGS 286


>gi|66047988|ref|YP_237829.1| hypothetical protein Psyr_4764 [Pseudomonas syringae pv. syringae
           B728a]
 gi|289672466|ref|ZP_06493356.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae
           FF5]
 gi|302188128|ref|ZP_07264801.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae
           642]
 gi|63258695|gb|AAY39791.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|330970967|gb|EGH71033.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330980022|gb|EGH78288.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 398

 Score = 41.8 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAAEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI+V ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILVSASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|289624668|ref|ZP_06457622.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330871120|gb|EGH05829.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 398

 Score = 41.8 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGKGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI+V ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILVSASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|312135034|ref|YP_004002372.1| ribosomal L11 methyltransferase [Caldicellulosiruptor owensensis
           OL]
 gi|311775085|gb|ADQ04572.1| ribosomal L11 methyltransferase [Caldicellulosiruptor owensensis
           OL]
          Length = 389

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED------IIEMD 297
           VLD     GG T      GA     +D+S   +E+   N     + ++       + +  
Sbjct: 218 VLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESKCEFVVANVFDYL 277

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ +D +++D P              + +    +  +    +++ L+ +  +K 
Sbjct: 278 NELDDKKEKYDMIILDLPA-------------FAKSIHTLENAKRGYKEINLRAMKILKK 324

Query: 358 GGIVVFSNCS 367
           GGI+V  +CS
Sbjct: 325 GGILVTCSCS 334


>gi|330954994|gb|EGH55254.1| SAM-dependent methyltransferase [Pseudomonas syringae Cit 7]
          Length = 398

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAAEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI+V ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILVSASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|327313923|ref|YP_004329360.1| transcription antitermination factor NusB [Prevotella denticola
           F0289]
 gi|326944316|gb|AEA20201.1| transcription antitermination factor NusB [Prevotella denticola
           F0289]
          Length = 359

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+     +   T+         +     +    R  Y    ++++++A++L + ++ 
Sbjct: 204 DEEDRDFAVKLFRATILNADDYQHYMSESSRNWDFSRLAYMDVIIMQIAIAEMLTFPNIP 263

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
               ++  V+ AK           +N +L  ++R  I+  + +     +PE    R  N 
Sbjct: 264 VTVTINEYVDLAK-LYSTPRSGGYINGMLDTIARHLIQTGKMMK---TMPEPRPRRPYND 319

Query: 160 YGKERV 165
              +R 
Sbjct: 320 RQADRT 325


>gi|254431134|ref|ZP_05044837.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001]
 gi|197625587|gb|EDY38146.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001]
          Length = 211

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 59  FLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
               ID  LD V+    L R     + +LR++   +           + AV+ A R  + 
Sbjct: 132 QREAIDRRLDAVMEGWRLTRLPRIDRDILRLAAVDLADFHTPAPVACNEAVDLANRYSDE 191

Query: 118 RHFAKLVNSILRRVSR 133
           R   +++N +LRR + 
Sbjct: 192 RGR-RMINGVLRRYTD 206


>gi|289648508|ref|ZP_06479851.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 398

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI+V ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILVSASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|330872375|gb|EGH06524.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 366

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|218129920|ref|ZP_03458724.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697]
 gi|317476859|ref|ZP_07936102.1| transcription antitermination factor NusB [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988030|gb|EEC54355.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697]
 gi|316907034|gb|EFV28745.1| transcription antitermination factor NusB [Bacteroides eggerthii
           1_2_48FAA]
          Length = 308

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+   R +   ++        ++     +  L R  +    +++ ++A+IL + ++ 
Sbjct: 205 DEEDRDFARRLFRRSILNCDYYRHLISENTRNWDLDRVAFMDVVIMQCALAEILSFPNIP 264

Query: 100 DYAVVDLAVEQAKRDKENRHFA 121
               ++  V+ AK     +  +
Sbjct: 265 VSVSLNEYVDIAKVYSTTKSGS 286


>gi|71736452|ref|YP_276895.1| hypothetical protein PSPPH_4795 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557005|gb|AAZ36216.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326358|gb|EFW82411.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331651|gb|EFW87589.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 398

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|257482977|ref|ZP_05637018.1| hypothetical protein PsyrptA_06961 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330891351|gb|EGH24012.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. mori str.
           301020]
 gi|330985922|gb|EGH84025.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011782|gb|EGH91838.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 398

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI+V ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILVSASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|226509228|ref|NP_001150841.1| LOC100284474 [Zea mays]
 gi|195642298|gb|ACG40617.1| RNA binding protein [Zea mays]
          Length = 280

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           + L+ A+ +   + +  ID ++        + R       +L +++A++         V+
Sbjct: 183 RELLVAVASGWDKHVEIIDKIIPQAWKDEPVARI--LELCILHIAMAEMTSKGTPHKVVI 240

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
           + AV+ AKR   +    +++N  LR   ++ 
Sbjct: 241 NEAVDLAKRFC-DGGAPRVINGCLRTFVKDH 270


>gi|71420265|ref|XP_811426.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876090|gb|EAN89575.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1029

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 345 RKLLLQGISFV-KPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
           R+ L Q + +V   GG+VV++  S++  ++E V+  VL    
Sbjct: 552 RQELAQALEYVGMQGGVVVYATHSMNPLENEAVICSVLTEFK 593


>gi|330883391|gb|EGH17540.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 190

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 26  RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 85

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 86  LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 132

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 133 KDGILVSASCSMHLPEDDLQ 152


>gi|304403943|ref|ZP_07385605.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
 gi|304346921|gb|EFM12753.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
          Length = 464

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 59/181 (32%), Gaps = 22/181 (12%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL- 269
            +   P     +  +   +A+     F   +  +VL+  A  G  T      GAK     
Sbjct: 228 RLEERPAEDTEIMQLVPVNANGKEVTFPYWDGATVLECFAHTGSFTLHACKYGAKKVTCL 287

Query: 270 DVSKRRLEKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVL-----------VDA 314
           D+S+  ++  R N+ R               D   +  K + D +            VD 
Sbjct: 288 DISEHAIDTARRNVARNGFDDRVEFVVADAFDYLRHQAKGVDDRLARAAVNQEEGRKVDT 347

Query: 315 PCSSTGTIRRHPDV------LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
                    R  DV       +T+    +  +    + + L G+  V  GG +V ++CS 
Sbjct: 348 SKKLQAGGGRTWDVVVLDPPAFTKTRGAVSGAVRGYKDINLHGMKLVNDGGYLVTASCSY 407

Query: 369 D 369
            
Sbjct: 408 H 408


>gi|289578528|ref|YP_003477155.1| hypothetical protein Thit_1332 [Thermoanaerobacter italicus Ab9]
 gi|289528241|gb|ADD02593.1| protein of unknown function Met10 [Thermoanaerobacter italicus Ab9]
          Length = 391

 Score = 41.8 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 245 VLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----- 298
           VLD  +  G  T   +  G  +V  +D+S+  +E  + N++            D      
Sbjct: 220 VLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQGRCNFVCDNAFDIL 279

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD +++D P              +T+  + +  +    +++ L+ +  ++ 
Sbjct: 280 RRYDKEGRKFDTIILDPPA-------------FTKSKETVKDALRGYKEINLRALKILRE 326

Query: 358 GGIVVFSNCS--LDKQDSEEVVQKVLRSSPIPVELV 391
           GG ++  +CS  +       V+++    +   V LV
Sbjct: 327 GGFLITCSCSQHIKPDMFLGVIKEAANDAKRNVRLV 362


>gi|313901566|ref|ZP_07835009.1| SAM-dependent methyltransferase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468180|gb|EFR63651.1| SAM-dependent methyltransferase [Thermaerobacter subterraneus DSM
           13965]
          Length = 427

 Score = 41.4 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLE--KLRCNLDRLHLYAEDIIEMDAFD 300
            VLD     G  T   +V GA+   A+D+ +  L   +      R  L + +        
Sbjct: 250 RVLDAFCHTGAFTCHALVYGAREVVAVDIQEEVLAVARENVEQVRRQLGSGEARVTFHHA 309

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
                 FD +   A       +       + ++   +  +    +++ L+ +  + PGGI
Sbjct: 310 NA----FDFLRARAAEGERYDVIILDPPAFAKNRQALAGAYRGYKEINLRAMKMLPPGGI 365

Query: 361 VVFSNCSLD 369
           +V  +CS  
Sbjct: 366 LVTCSCSYH 374


>gi|124005043|ref|ZP_01689885.1| NusB antitermination factor [Microscilla marina ATCC 23134]
 gi|123989295|gb|EAY28856.1| NusB antitermination factor [Microscilla marina ATCC 23134]
          Length = 462

 Score = 41.4 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/118 (6%), Positives = 35/118 (29%), Gaps = 9/118 (7%)

Query: 11  SSHLLSCV----MRKRISLTCL---LDLEYGDSAFRLLSQRDQILVRAIV-NVTLRFLPR 62
           +   +  +      +          ++  +  S        D +  + +           
Sbjct: 313 AVKTIKAIMGDTEEEDGDAEETEITINKNFELSPLSKNWDEDVVFYKNLYNFNVEGNQRY 372

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
            D +        + R     + +L++++ +++ +  +     ++  +E AK     + 
Sbjct: 373 EDIIAKKTKNWDIERLALIDKVILKMAICEMINFYSIPVKVTINEYIELAKTYSTPKS 430


>gi|78187088|ref|YP_375131.1| hypothetical protein Plut_1226 [Chlorobium luteolum DSM 273]
 gi|78166990|gb|ABB24088.1| SAM-dependent methyltransferase [Chlorobium luteolum DSM 273]
          Length = 393

 Score = 41.4 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 24/146 (16%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----- 297
            VLD+    GG     +  GA     +D S+  L++   N     +    ++  D     
Sbjct: 221 RVLDVFTNDGGFGLNALAGGASSALLVDASEEALKRAERNAGLNGMDNFSLMAGDAFDVL 280

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ FD V++D P              +T+   ++  +    +KL   G+  VK 
Sbjct: 281 QQMIDAKEQFDIVILDPPS-------------FTKSRKNLPVALKAYKKLNQLGLKLVKN 327

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRS 383
           GG +  ++CS    +     +  L+S
Sbjct: 328 GGFLATASCSHHVSE-----EDFLQS 348


>gi|226323527|ref|ZP_03799045.1| hypothetical protein COPCOM_01302 [Coprococcus comes ATCC 27758]
 gi|225208211|gb|EEG90565.1| hypothetical protein COPCOM_01302 [Coprococcus comes ATCC 27758]
          Length = 405

 Score = 41.4 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 22/130 (16%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC 302
           VLD     G       ++GAK    +D S+  +E+ R N     L    + +  D FD  
Sbjct: 231 VLDCFTHTGSFALNAGIAGAKHVTGVDASELGIEQARENARLNGLEDRVEFVCADVFDLL 290

Query: 303 PK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           PK     K +D V++D P              +T+    I  +    R++ ++G+  VKP
Sbjct: 291 PKLEEEGKQYDVVILDPPA-------------FTKSRKTIKNATKGYREINMRGMKLVKP 337

Query: 358 GGIVVFSNCS 367
           GG +  + CS
Sbjct: 338 GGYL--ATCS 345


>gi|319936769|ref|ZP_08011181.1| methyltransferase [Coprobacillus sp. 29_1]
 gi|319808037|gb|EFW04609.1| methyltransferase [Coprobacillus sp. 29_1]
          Length = 400

 Score = 41.4 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 18/137 (13%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA----EDII 294
            +   VLD  +  GG           +V A+DVS+  L +   N    HL          
Sbjct: 226 AHGKKVLDCFSHTGGFALNAAYGKAKEVHAVDVSQTALNQAYENAKLNHLENKMRFIKDD 285

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
             D  D C    +D +++D P              +T+    I  +    +K+ ++ I  
Sbjct: 286 VFDYLDKCKVGQYDIIVLDPPA-------------FTKSRRTIDHAYNGYKKINMKAIKL 332

Query: 355 VKPGGIVVFSNCSLDKQ 371
           +  GG ++  +CS   +
Sbjct: 333 LGRGGYLITCSCSRFME 349


>gi|323342016|ref|ZP_08082249.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464441|gb|EFY09634.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 134

 Score = 41.4 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 7/124 (5%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA----FRLLSQRDQILVRAIVNVTLR 58
           S  N R  +   +   + +  S+  +L+     S      +  + +D++L   +V     
Sbjct: 4   SRYNERQNAMSAIYIHLLREQSMQEVLEDNRFVSEVGTFIQDFNLQDEML--QVVMNVEA 61

Query: 59  FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117
                   +D  L      R  +  Q +L ++ A++         +V+ AV  AK   + 
Sbjct: 62  RKDIYSRAIDHYLTKWRFDRLGFIEQAILLMACAELELGYQDKVVIVNEAVNLAKDFSDE 121

Query: 118 RHFA 121
             + 
Sbjct: 122 ESYK 125


>gi|297544803|ref|YP_003677105.1| hypothetical protein Tmath_1380 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842578|gb|ADH61094.1| protein of unknown function Met10 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 391

 Score = 41.4 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 20/132 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----- 298
           VLD  +  G  T   +  G  +V  +D+S+  +E  + N++            D      
Sbjct: 220 VLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQGRCNFVCDNAFDIL 279

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD +++D P              +T+  + +  +    +++ L+ +  ++ 
Sbjct: 280 RRYDKEGRKFDTIILDPPA-------------FTKSKETVKDALRGYKEINLRALKILRE 326

Query: 358 GGIVVFSNCSLD 369
           GG ++  +CS  
Sbjct: 327 GGFLITCSCSQH 338


>gi|332299598|ref|YP_004441519.1| hypothetical protein Poras_0397 [Porphyromonas asaccharolytica DSM
           20707]
 gi|332176661|gb|AEE12351.1| hypothetical protein Poras_0397 [Porphyromonas asaccharolytica DSM
           20707]
          Length = 225

 Score = 41.4 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI-DAVLDFVLISSL 75
            V  +    T   + EY       ++ +D+  V+      L+      D ++  +   S+
Sbjct: 132 QVELRGRDFTLRTEYEYVAPLRNPITPQDRARVKNRAYQVLQQEITSNDQLIAQIRQRSI 191

Query: 76  PRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106
            + +  L QLL     ++         V+  
Sbjct: 192 EKLRRWLTQLLLS--YEL-----PPTVVIVE 215


>gi|328887293|emb|CCA60532.1| Uncharacterized methyltransferase [Streptomyces venezuelae ATCC
           10712]
          Length = 229

 Score = 41.4 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 8/160 (5%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA 264
           L  LP  +++LPG        +  +    +          VLD+    G        +GA
Sbjct: 9   LGTLPGKLIALPGVYSPQADTRLLA--EALSREELDATTDVLDIGTGTGALALCAARTGA 66

Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP--CSSTGTI 322
           +V A+DVS R +   + N  R       ++  D       + FD +L + P   S+    
Sbjct: 67  RVVAVDVSWRAVIAAKLNAIRQGQR-LRVLHGDFSTRVQGRRFDLILTNPPYVPSARSRP 125

Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             H          D         ++  +  + ++PGG+++
Sbjct: 126 PSHGAARAWDAGPDGRAVID---RVCARAPALLRPGGVLL 162


>gi|300914495|ref|ZP_07131811.1| Protein of unknown function methylase putative [Thermoanaerobacter
           sp. X561]
 gi|307724269|ref|YP_003904020.1| hypothetical protein Thet_1126 [Thermoanaerobacter sp. X513]
 gi|320116164|ref|YP_004186323.1| hypothetical protein Thebr_1366 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|300889430|gb|EFK84576.1| Protein of unknown function methylase putative [Thermoanaerobacter
           sp. X561]
 gi|307581330|gb|ADN54729.1| Conserved hypothetical protein CHP00095 [Thermoanaerobacter sp.
           X513]
 gi|319929255|gb|ADV79940.1| Conserved hypothetical protein CHP00095 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 391

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 245 VLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRC------NLDRLHLYAEDIIEMD 297
           VLD  +  G  T   +  G  +V  +D+S+  +E  +         +R +   ++  ++ 
Sbjct: 220 VLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQERCNFVCDNAFDLL 279

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD V++D P              +T+  + +  +    +++ L+ +  ++ 
Sbjct: 280 RKYDKENRKFDTVILDPPA-------------FTKSKETVKDALRGYKEINLRALKILRE 326

Query: 358 GGIVVFSNCS--LDKQDSEEVVQKVLRSSPIPVELV 391
           GG ++  +CS  +      +V+++    +   V LV
Sbjct: 327 GGFLITCSCSQHIKPDMFLDVIKEAANDAKRNVRLV 362


>gi|194688732|gb|ACF78450.1| unknown [Zea mays]
          Length = 284

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           + L+ A+ +   + +  ID ++        + R       +L +++A++         V+
Sbjct: 183 RELLVAVASGWDKHVEIIDKIIPQAWKDEPVARI--LELCILHIAMAEMTSKGTPHKVVI 240

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
           + AV+ AKR   +    +++N  LR   ++ 
Sbjct: 241 NEAVDLAKRFC-DGGAPRVINGCLRTFVKDH 270


>gi|167037750|ref|YP_001665328.1| hypothetical protein Teth39_1338 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040444|ref|YP_001663429.1| hypothetical protein Teth514_1811 [Thermoanaerobacter sp. X514]
 gi|256752474|ref|ZP_05493332.1| protein of unknown function Met10 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|166854684|gb|ABY93093.1| protein of unknown function Met10 [Thermoanaerobacter sp. X514]
 gi|166856584|gb|ABY94992.1| protein of unknown function Met10 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748676|gb|EEU61722.1| protein of unknown function Met10 [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 415

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 245 VLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRC------NLDRLHLYAEDIIEMD 297
           VLD  +  G  T   +  G  +V  +D+S+  +E  +         +R +   ++  ++ 
Sbjct: 244 VLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQERCNFVCDNAFDLL 303

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD V++D P              +T+  + +  +    +++ L+ +  ++ 
Sbjct: 304 RKYDKENRKFDTVILDPPA-------------FTKSKETVKDALRGYKEINLRALKILRE 350

Query: 358 GGIVVFSNCS--LDKQDSEEVVQKVLRSSPIPVELV 391
           GG ++  +CS  +      +V+++    +   V LV
Sbjct: 351 GGFLITCSCSQHIKPDMFLDVIKEAANDAKRNVRLV 386


>gi|254243452|ref|ZP_04936774.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126196830|gb|EAZ60893.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 398

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFD- 300
            VLDL +  GG   Q    GA      D S   L+ +  N     +      +E D F+ 
Sbjct: 223 RVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEA 282

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V+ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAADERFDVVIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|330752415|emb|CBL87366.1| thioredoxin family protein [uncultured Flavobacteria bacterium]
          Length = 307

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 45/128 (35%), Gaps = 10/128 (7%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL----PRKK 79
           ++  L   +   + F      D   + ++   T+     I+   + +   +      R  
Sbjct: 184 NINKLFKNDSKSNKFFKKDD-DVSFMISLFKQTINNEEFIE---NQLSGKTPNWDKERIA 239

Query: 80  YSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
                +L+++++++LY   +   A ++  +E AK     +  A  +N +L    ++    
Sbjct: 240 GLDYVILKMAISELLYFPTIPVKATINEYLEIAKEYATPKS-AIFINGVLDNSLKDFSSK 298

Query: 139 LQRIAGIS 146
                   
Sbjct: 299 KMIHKMKM 306


>gi|153853041|ref|ZP_01994450.1| hypothetical protein DORLON_00435 [Dorea longicatena DSM 13814]
 gi|149753827|gb|EDM63758.1| hypothetical protein DORLON_00435 [Dorea longicatena DSM 13814]
          Length = 51

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 83  QQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
             +LR++V ++ +  DV     ++ AV  AK+       +
Sbjct: 1   LTILRLAVYEMKWDEDVPTGVAINEAVNLAKKYSSEDGAS 40


>gi|107099338|ref|ZP_01363256.1| hypothetical protein PaerPA_01000350 [Pseudomonas aeruginosa PACS2]
          Length = 398

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFD- 300
            VLDL +  GG   Q    GA      D S   L+ +  N     +      +E D F+ 
Sbjct: 223 RVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEA 282

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V+ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAADERFDVVIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|213858030|ref|ZP_03385001.1| transcription antitermination protein NusB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 59

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 82  LQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
            + +LR+++ ++    DV     ++ A+E AK         K VN +L +
Sbjct: 1   EKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGVLDK 49


>gi|15595551|ref|NP_249045.1| hypothetical protein PA0354 [Pseudomonas aeruginosa PAO1]
 gi|116054082|ref|YP_788525.1| hypothetical protein PA14_04640 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296386850|ref|ZP_06876349.1| SAM-dependent methyltransferase [Pseudomonas aeruginosa PAb1]
 gi|313112031|ref|ZP_07797816.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           39016]
 gi|9946204|gb|AAG03743.1|AE004473_5 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115589303|gb|ABJ15318.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310884318|gb|EFQ42912.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           39016]
          Length = 398

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFD- 300
            VLDL +  GG   Q    GA      D S   L+ +  N     +      +E D F+ 
Sbjct: 223 RVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEA 282

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V+ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAADERFDVVIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|330957099|gb|EGH57359.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 398

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGAADVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|68171632|ref|ZP_00544999.1| N utilization substance protein B, putative [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88658441|ref|YP_507582.1| putative N utilization substance protein B [Ehrlichia chaffeensis
           str. Arkansas]
 gi|67998953|gb|EAM85637.1| N utilization substance protein B, putative [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599898|gb|ABD45367.1| putative N utilization substance protein B [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 174

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 5/115 (4%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTC---LLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58
                 R ++      ++    ++     L+D  Y       L Q D  L+  I+N  L 
Sbjct: 13  SKKTTTRFLAIQGTYSMIFNNYTINDIDNLIDYLYEMKEVLDLIQIDNQLLLKIMNTMLL 72

Query: 59  FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
               I++ +   L    S+ R       +++ +V +++  D     +++  V  A
Sbjct: 73  TFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELICSDTDAVIIINEYVNIA 127


>gi|253997351|ref|YP_003049415.1| type 12 methyltransferase [Methylotenera mobilis JLW8]
 gi|253984030|gb|ACT48888.1| Methyltransferase type 12 [Methylotenera mobilis JLW8]
          Length = 170

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 37/190 (19%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
            ++ AS+ I        +   VLDL    G     L   G +V ALD             
Sbjct: 1   MLEPASSWIVKFAPLIKSQGLVLDLACGSGRHAKWLAQQGYQVHALDRDPTV------TS 54

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
               +    I  +D            +    P +   +        +             
Sbjct: 55  SMQGIDGIRITTID------------LETAEPPTFEYSYDGIIVSRYLHRP--------- 93

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403
              LL    S +KPGGI+++       Q +E    +  + S     L+P       S  +
Sbjct: 94  ---LLSTLASLLKPGGILIYET---FMQGNE----RFGKPSNPDFLLMPDELLNIYSPLL 143

Query: 404 AMALSPEGWI 413
            +    +G +
Sbjct: 144 KVLAFEQGEV 153


>gi|242038659|ref|XP_002466724.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor]
 gi|241920578|gb|EER93722.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor]
          Length = 284

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           + L+ A+ +   + +  ID ++        + R       +L +++A++         V+
Sbjct: 183 RELLVAVASGWDKHVDIIDKIIPQAWKDEPVARI--LELCILHIAMAEMTSKGTPHKVVI 240

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
           + AV+ AKR   +    +++N  LR   ++ 
Sbjct: 241 NEAVDLAKRFC-DGGAPRVINGCLRTFVKDH 270


>gi|218889095|ref|YP_002437959.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           LESB58]
 gi|254237410|ref|ZP_04930733.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169341|gb|EAZ54852.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218769318|emb|CAW25078.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           LESB58]
          Length = 398

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFD- 300
            VLDL +  GG   Q    GA      D S   L+ +  N     +      +E D F+ 
Sbjct: 223 RVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEA 282

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V+ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAADERFDVVIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 330 KDGILVSASCSMHLPEDDLQ 349


>gi|120553745|ref|YP_958096.1| hypothetical protein Maqu_0812 [Marinobacter aquaeolei VT8]
 gi|120323594|gb|ABM17909.1| SAM-dependent methyltransferase [Marinobacter aquaeolei VT8]
          Length = 398

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            VLD+ +  GG   Q   +GA      D S   ++ +  N     L   D IE DAFD  
Sbjct: 223 KVLDVFSYVGGWGIQAACAGASQVTCVDASSAAVDAVHHNAKLNGLENVDTIEGDAFDAL 282

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                 K+ FD V++D P      I R           D         +L   G+  ++ 
Sbjct: 283 KALADEKEKFDIVVLDPP----ALIPRRR---------DQKAGEQAYARLNQLGLRLLER 329

Query: 358 GGIVVFSNCSLD 369
            G++V ++CS+ 
Sbjct: 330 DGLLVSASCSMH 341


>gi|115653248|ref|XP_784229.2| PREDICTED: similar to Chain A, Methyltransferase
           [Strongylocentrotus purpuratus]
 gi|115934495|ref|XP_001191187.1| PREDICTED: similar to Chain A, Methyltransferase
           [Strongylocentrotus purpuratus]
          Length = 290

 Score = 41.0 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 10/123 (8%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
                +LDL    G  +  L+  G +V + D ++  L   R    RL L    +   +  
Sbjct: 61  KKCHRILDLACGKGVDSVFLLEQGMEVVSCDDAEAMLVYARSEKTRLGLKDWVVKRANWL 120

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                           C  +  +             D+       RK L     F+KPGG
Sbjct: 121 TLSEDLPDQEPFDAVLCLGSSILH----------LVDLPPQLGLYRKCLTNFRKFLKPGG 170

Query: 360 IVV 362
           +++
Sbjct: 171 LLL 173


>gi|302345746|ref|YP_003814099.1| transcription antitermination factor NusB [Prevotella
           melaninogenica ATCC 25845]
 gi|302149617|gb|ADK95879.1| transcription antitermination factor NusB [Prevotella
           melaninogenica ATCC 25845]
          Length = 333

 Score = 41.0 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSL 82
                      +       + D+     +   T+         +     +    R  Y  
Sbjct: 165 PANGADQELLPEYR----DEEDRDFALKLFRSTILNADDYQRYMSESSRNWDFSRLAYMD 220

Query: 83  QQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
             ++++++A++L + ++     ++  V+ AK           +N +L  ++R  I+  + 
Sbjct: 221 VVIMQIAIAEMLTFPNIPVTVTINEYVDLAK-LYSTPRSGGYINGMLDTIARHLIQTGKM 279

Query: 142 IAGISIIPEWFKERLENFYGKERV 165
           +     +PE  + R  N   +ER 
Sbjct: 280 MK---TMPEPRQHRPRNDRQEERA 300


>gi|145355780|ref|XP_001422128.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582368|gb|ABP00445.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 493

 Score = 41.0 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 244 SVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD+C   GG      + G + V A+D S+  L+  + N +   L        D  ++ 
Sbjct: 318 RVLDVCCYTGGFALNAALGGASDVVAVDSSESALDMAKKNAELNGLQ-------DKVNFV 370

Query: 303 PKKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               FD +  +      G+          +      + K+      L  + ++ ++PGGI
Sbjct: 371 RADAFDFMQAEIDAGRAGSYDVVVLDPPKFAPTKPALKKAIPKYVGLNKRAMTLLRPGGI 430

Query: 361 VVFSNCS 367
           ++  +CS
Sbjct: 431 LITCSCS 437


>gi|224006660|ref|XP_002292290.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971932|gb|EED90265.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 425

 Score = 41.0 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 20/145 (13%)

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288
                +        VL+  A  G  +     +GA   +LD+ K+ L+++   L+   +  
Sbjct: 241 QRAWLVEHCTGETRVLNCFAHTGAFSVAAATAGASTVSLDLDKKWLDRVPPQLEANGIAW 300

Query: 289 ----YAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
                       D      K+   FD V++D P +S G  ++   V    D         
Sbjct: 301 DKKHDCIYGDCFDWLARLAKRNEQFDIVILDPPSTSVGKKKKRWSVKSDMDE-------- 352

Query: 343 FQRKLLLQGISFVKPGGIVVFSNCS 367
               L+      VK GG+++ +  S
Sbjct: 353 ----LVALAAPLVKKGGLLMTTTNS 373


>gi|330902934|gb|EGH33877.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 177

 Score = 41.0 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 18  RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 77

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 78  LKELKAAEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 124

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+V ++CS+   + +  
Sbjct: 125 KDGILVSASCSMHLPEDDLQ 144


>gi|47211995|emb|CAF92722.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 138

 Score = 41.0 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393
            VV+   S+  +++E++V++VL  +    +L+P 
Sbjct: 4   TVVYCTRSVYPEENEQLVKRVLEKTHTHPKLLPF 37


>gi|255074075|ref|XP_002500712.1| predicted protein [Micromonas sp. RCC299]
 gi|226515975|gb|ACO61970.1| predicted protein [Micromonas sp. RCC299]
          Length = 455

 Score = 41.0 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 244 SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD+C   GG      + GA  VT +D S   L+  R N D   + A            
Sbjct: 279 RVLDVCCYTGGFAINAALGGAADVTGVDSSPLALDIARRNADVNGVGARTTFVQSEAF-- 336

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             K  D ++ D+    T  +            + +  +     K+    +  ++PGGI+V
Sbjct: 337 --KYLDDLVADSGNLGTFDMIVLDPPKLAPSVNALAGATRKYVKMNQAAMRLLRPGGILV 394

Query: 363 FSNCS 367
             +CS
Sbjct: 395 TCSCS 399


>gi|218667536|ref|YP_002425370.1| hypothetical protein AFE_0892 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218519749|gb|ACK80335.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 407

 Score = 41.0 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----- 297
            VLD  A  GG    L  +GA    A+D S   L  L  N  R  +     I  D     
Sbjct: 227 RVLDCFAYLGGFAIPLAKAGASAVTAVDSSAPALAILEENARRNEVEGLHSIHGDAMETL 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD +++D P                +   D  + +   R+     +  + P
Sbjct: 287 HNLRDRGEQFDLIVLDPPAL-------------IKSKKDFKEGSIAYRRFNDMAMRLLTP 333

Query: 358 GGIVVFSNCSLD 369
           GGI+  ++CS  
Sbjct: 334 GGILFSASCSHH 345


>gi|302387707|ref|YP_003823529.1| RNA methylase [Clostridium saccharolyticum WM1]
 gi|302198335|gb|ADL05906.1| putative RNA methylase [Clostridium saccharolyticum WM1]
          Length = 401

 Score = 41.0 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 22/131 (16%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDY 301
            VLD     G       ++GA+    +D S+  + + + N +   L +       D F+ 
Sbjct: 225 RVLDCFTHTGSFALNAGIAGAREVLGVDASELGIAQAKENAELNGLSHRVAFQCADVFEL 284

Query: 302 CP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            P      + FD V++D P              +T+  + +  +    R++ L+G+  VK
Sbjct: 285 LPELEKNGEKFDVVILDPPA-------------FTKSRNSVKNAVKGYREINLRGMKLVK 331

Query: 357 PGGIVVFSNCS 367
            GG +  + CS
Sbjct: 332 DGGYL--ATCS 340


>gi|319789216|ref|YP_004150849.1| protein of unknown function Met10 [Thermovibrio ammonificans HB-1]
 gi|317113718|gb|ADU96208.1| protein of unknown function Met10 [Thermovibrio ammonificans HB-1]
          Length = 399

 Score = 41.0 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 21/155 (13%)

Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLR 280
           +++      +            VLD     GG      V G   +V A+D S+  L+  R
Sbjct: 201 YFLDQRENKLLFATEFVKEGDRVLDAFCHLGGFGIHAAVIGKAGEVVAVDSSQLALDLAR 260

Query: 281 CNLDRLHLYAEDIIEMDA------FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
            N     +  +                   + FD++++D P              + +  
Sbjct: 261 ENAALNGVEEKFTFVKGDAFKVLKEMSLWGEKFDSIVIDPPA-------------FAKSK 307

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
             + ++    ++L L+G+  +KPGG +V  +CS  
Sbjct: 308 KVLEQAKKGYKELFLRGLKMLKPGGNIVVCSCSHH 342


>gi|189467494|ref|ZP_03016279.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM
           17393]
 gi|189435758|gb|EDV04743.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM
           17393]
          Length = 308

 Score = 41.0 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K  +   LL             + DQ   R +    +        ++   
Sbjct: 182 VLKTIKRFEEKNGANQTLLPEFK--------DEEDQEFARRLFRRAILNCDYYRHLISEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK     +  +
Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTIKSGS 286


>gi|198283142|ref|YP_002219463.1| methyltransferase small [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198247663|gb|ACH83256.1| methyltransferase small [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 407

 Score = 41.0 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----- 297
            VLD  A  GG    L  +GA    A+D S   L  L  N  R  +     I  D     
Sbjct: 227 RVLDCFAYLGGFAIPLAKAGASAVTAVDSSAPALAILEENARRNEVEGLHSIHGDAMETL 286

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD +++D P                +   D  + +   R+     +  + P
Sbjct: 287 HNLRDRGEQFDLIVLDPPAL-------------IKSKKDFKEGSIAYRRFNDMAMRLLTP 333

Query: 358 GGIVVFSNCSLD 369
           GGI+  ++CS  
Sbjct: 334 GGILFSASCSHH 345


>gi|115373887|ref|ZP_01461179.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310820973|ref|YP_003953331.1| hypothetical protein STAUR_3716 [Stigmatella aurantiaca DW4/3-1]
 gi|115369153|gb|EAU68096.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309394045|gb|ADO71504.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 398

 Score = 41.0 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-------EDIIEMDAFD 300
            C + G      +     V ++D+    +   R N  R  L A        D+ ++    
Sbjct: 230 FCFSGGFSVNAALGGAKSVFSVDLDPDAIALARENFTRNGLPAERHDFLAADVFKIIQSF 289

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD +++D P              + +    +  +      L  Q ++ ++PGG+
Sbjct: 290 KDEGRTFDLIILDPPA-------------FAKSQKAVQAAIDGYASLNRQALALLRPGGL 336

Query: 361 VVFSNCS 367
           +  ++CS
Sbjct: 337 LATASCS 343


>gi|149279327|ref|ZP_01885458.1| putative N utilization substance protein [Pedobacter sp. BAL39]
 gi|149229853|gb|EDM35241.1| putative N utilization substance protein [Pedobacter sp. BAL39]
          Length = 297

 Score = 41.0 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/81 (9%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 43  QRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVAD 100
           + D+  V  +   TLR       ++     +    R       L+++++ +++ +  +  
Sbjct: 188 EEDRKFVEDLFAYTLRKDKEYQELIADRTKNWESERIALMDTILMKMAICELMNFPSIPV 247

Query: 101 YAVVDLAVEQAKRDKENRHFA 121
              ++  ++ +K     +  +
Sbjct: 248 KVTINEYLDLSKDYSTPKSNS 268


>gi|253563478|ref|ZP_04840935.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762654|ref|ZP_06091222.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|251947254|gb|EES87536.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255262|gb|EEZ26608.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 308

 Score = 41.0 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              DQ   R +    +        ++     +  L R  +    +++ ++A+IL + ++ 
Sbjct: 205 DDEDQEFARRLFRRAILNADYYRHLISENTKNWDLDRVAFMDVIIMQCALAEILSFPNIP 264

Query: 100 DYAVVDLAVEQAK 112
               ++  VE AK
Sbjct: 265 VSVSLNEYVEIAK 277


>gi|57641720|ref|YP_184198.1| tRNA/rRNA methyltransferase [Thermococcus kodakarensis KOD1]
 gi|57160044|dbj|BAD85974.1| probable tRNA/rRNA methyltransferase [Thermococcus kodakarensis
           KOD1]
          Length = 396

 Score = 41.0 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 20/139 (14%)

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED---- 292
                + VLD+    GG      V+GA    A+D S   +  ++ N     +  +     
Sbjct: 214 YVKPGMRVLDVFTYTGGFAIHAAVAGADEVVAVDKSPWAINMVKENAKLNGVEDKMKYIV 273

Query: 293 --IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                +        + FD V++D P              + +   D+ +       +   
Sbjct: 274 GSAFPVMEEMIKRGEKFDIVILDPPA-------------FVQHEKDLKRGLRAYFNVNYA 320

Query: 351 GISFVKPGGIVVFSNCSLD 369
           G+  VK GGI+V ++CS  
Sbjct: 321 GLQLVKEGGILVTASCSQH 339


>gi|254520439|ref|ZP_05132495.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226914188|gb|EEH99389.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 391

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 24/191 (12%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
               T    ++   + IV L    +  +++        +       +  VLD     G  
Sbjct: 173 EPFDTNIQIIENGVKYIVDLENGQKTGFFLDQKENRAAMHRIC--KDKDVLDCFTHTGSF 230

Query: 256 TAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDA------FDYCPKKLFD 308
                ++GAK    +DVS+  ++  + N +  +L      E               K FD
Sbjct: 231 ALNAGIAGAKSVLGIDVSQHAIDCAKKNAELNNLQDVVKFECHNAFDVLGDWSREGKQFD 290

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            V++D P              +T+  + I  +    +++ L+G+  VK GG   F+ CS 
Sbjct: 291 VVILDPPA-------------FTKSRNTIKSAIRGYKEINLRGLKMVKSGGY--FATCSC 335

Query: 369 DKQDSEEVVQK 379
               SEE ++K
Sbjct: 336 SHYMSEEQLKK 346


>gi|329897170|ref|ZP_08271910.1| HemK family modification methylase [gamma proteobacterium IMCC3088]
 gi|328921325|gb|EGG28719.1| HemK family modification methylase [gamma proteobacterium IMCC3088]
          Length = 275

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 5/122 (4%)

Query: 245 VLDLCAAPGG--KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
           VLDL    G              + A+D S+  L+    N + L +   D    D F   
Sbjct: 112 VLDLGTGSGAIALALASQRPQWSICAVDRSEDALDVATANQENLGIKNIDFYCSDWFASL 171

Query: 303 PKKLFDAVLVDAP---CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
           P+  FD ++ + P     S    +        +              ++ Q   ++K GG
Sbjct: 172 PQYQFDLIVSNPPYVEPDSAYLQQGDVRFEPIKALVAPNAGLADLFAIIDQAPKYLKSGG 231

Query: 360 IV 361
            +
Sbjct: 232 TL 233


>gi|326780899|ref|ZP_08240164.1| methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326661232|gb|EGE46078.1| methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 252

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 8/155 (5%)

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL 269
             +V LPG           + ++  +  G      +LDLC   G         GA+VTA+
Sbjct: 37  GRVVRLPGVYRPQTDTLLLALAMRREGIGP--GTDLLDLCTGSGALALHAARLGARVTAV 94

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP--CSSTGTIRRHPD 327
           D+S+R +   R N     L    +   D     P   FDAV+ + P   +   ++ R+  
Sbjct: 95  DISRRAVASARLNTALARLP-VTVRRGDLLRALPGHTFDAVVSNPPYVPAPGLSLPRYGP 153

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                   D         ++     + ++PGG+++
Sbjct: 154 GRSWDAGPDGRVILD---RICDDASAALRPGGLLL 185


>gi|182440236|ref|YP_001827955.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468752|dbj|BAG23272.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 252

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 8/155 (5%)

Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL 269
             +V LPG           + ++  +  G      +LDLC   G         GA+VTA+
Sbjct: 37  GRVVRLPGVYRPQTDTLLLALAMRREGIGP--GTDLLDLCTGSGALALHAARLGARVTAV 94

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP--CSSTGTIRRHPD 327
           D+S+R +   R N     L    +   D     P   FDAV+ + P   +   ++ R+  
Sbjct: 95  DISRRAVASARLNTALARLP-VTVRRGDLLRALPGHTFDAVVSNPPYVPAPGLSLPRYGP 153

Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                   D         ++     + ++PGG+++
Sbjct: 154 GRSWDAGPDGRVILD---RICDDASAALRPGGLLL 185


>gi|126731494|ref|ZP_01747300.1| diguanylate cyclase, putative [Sagittula stellata E-37]
 gi|126708030|gb|EBA07090.1| diguanylate cyclase, putative [Sagittula stellata E-37]
          Length = 332

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 17/121 (14%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  +L  V  K  ++               +   ++      +   LR    +D VLD 
Sbjct: 124 LAIEMLYLVEAKSAAMDA--SRSLNTRLQGAMVAAEERAFTDTLTG-LRNRRALDTVLDR 180

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
           +                      +++LD+  +  V+     A  D   RH A+++    R
Sbjct: 181 ISRQGR--------------AYALMHLDLDFFKAVNDTYGHAAGDHVLRHAARIMLEESR 226

Query: 130 R 130
           +
Sbjct: 227 K 227


>gi|320449949|ref|YP_004202045.1| SAM-dependent methyltransferase [Thermus scotoductus SA-01]
 gi|320150118|gb|ADW21496.1| SAM-dependent methyltransferase [Thermus scotoductus SA-01]
          Length = 381

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--- 300
             LD+ +  G     L +   +V ++D S   L +   N     L  + +          
Sbjct: 212 RALDVFSYAGSFGLHLALGFKEVISVDSSGEALRQAEENARLNGLTLKTVEANAFDHLRA 271

Query: 301 -YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                + FD +++D P              + +   D+ ++    +++ L+ I  +K GG
Sbjct: 272 LEKAGERFDLIVLDPPA-------------FAKGKKDLERAYRAYKEVNLRAIKLLKEGG 318

Query: 360 IVVFSNCSLDKQD 372
           ++  S+CS    +
Sbjct: 319 LLATSSCSHHLTE 331


>gi|60680691|ref|YP_210835.1| putative N utilization substance protein [Bacteroides fragilis NCTC
           9343]
 gi|60492125|emb|CAH06888.1| putative N utilization substance protein [Bacteroides fragilis NCTC
           9343]
 gi|301162218|emb|CBW21763.1| putative N utilization substance protein [Bacteroides fragilis
           638R]
          Length = 294

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              DQ   R +    +        ++     +  L R  +    +++ ++A+IL + ++ 
Sbjct: 191 DDEDQEFARRLFRRAILNADYYRHLISENTKNWDLDRVAFMDVIIMQCALAEILSFPNIP 250

Query: 100 DYAVVDLAVEQAK 112
               ++  VE AK
Sbjct: 251 VSVSLNEYVEIAK 263


>gi|53712491|ref|YP_098483.1| putative nitrogen utilization substance protein [Bacteroides
           fragilis YCH46]
 gi|52215356|dbj|BAD47949.1| putative nitrogen utilization substance protein [Bacteroides
           fragilis YCH46]
          Length = 258

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              DQ   R +    +        ++     +  L R  +    +++ ++A+IL + ++ 
Sbjct: 155 DDEDQEFARRLFRRAILNADYYRHLISENTKNWDLDRVAFMDVIIMQCALAEILSFPNIP 214

Query: 100 DYAVVDLAVEQAK 112
               ++  VE AK
Sbjct: 215 VSVSLNEYVEIAK 227


>gi|288803706|ref|ZP_06409135.1| NusB family protein [Prevotella melaninogenica D18]
 gi|288333795|gb|EFC72241.1| NusB family protein [Prevotella melaninogenica D18]
          Length = 297

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 10/144 (6%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSL 82
                      +       + D+     +   T+         +     +    R  Y  
Sbjct: 129 PANGADQELLPEYR----DEEDRDFALKLFRSTILNADDYQRYMSESSRNWDFSRLAYMD 184

Query: 83  QQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141
             ++++++A++L + ++     ++  V+ AK           +N +L  ++R  I+  + 
Sbjct: 185 VVIMQIAIAEMLTFPNIPVTVTINEYVDLAK-LYSTPRSGGYINGMLDTIARHLIQTGKM 243

Query: 142 IAGISIIPEWFKERLENFYGKERV 165
           +     +PE  + R  N   +ERV
Sbjct: 244 MK---TMPEPRQHRPRNDCQEERV 264


>gi|255007968|ref|ZP_05280094.1| putative N utilization substance protein [Bacteroides fragilis
           3_1_12]
 gi|313145684|ref|ZP_07807877.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134451|gb|EFR51811.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 308

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              DQ   R +    +        ++     +  L R  +    +++ ++A+IL + ++ 
Sbjct: 205 DDEDQEFARRLFRRAILNADYYRHLISENTKNWDLDRVAFMDVIIMQCALAEILSFPNIP 264

Query: 100 DYAVVDLAVEQAK 112
               ++  VE AK
Sbjct: 265 VSVSLNEYVEIAK 277


>gi|160892144|ref|ZP_02073147.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492]
 gi|270296236|ref|ZP_06202436.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480857|ref|ZP_07939938.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36]
 gi|156858622|gb|EDO52053.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492]
 gi|270273640|gb|EFA19502.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902942|gb|EFV24815.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K  +   LL             + DQ   R +    +        ++   
Sbjct: 182 VLKTIKRFEEKNGANQELLPEFK--------DEEDQEFARRLFRRAILNCDYYRHLISEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  V+ AK     +  +
Sbjct: 234 TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGS 286


>gi|90020263|ref|YP_526090.1| SAM-dependent methyltransferase [Saccharophagus degradans 2-40]
 gi|89949863|gb|ABD79878.1| SAM-dependent methyltransferase [Saccharophagus degradans 2-40]
          Length = 396

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 20/133 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD- 300
           +VLD+ +  GG   +   +GA+     D S++ L+ +    +          I+  A   
Sbjct: 222 TVLDVFSYAGGWGVEAANAGAESVTCVDASEQALDLVERAAELNGCDDKVMAIQGKAIHV 281

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ +D V++D P              + +   D        R +    +  +K
Sbjct: 282 LKLLIEEQQKYDVVVLDPPA-------------FIKRKKDQKSGEAAYRHINELAMRLLK 328

Query: 357 PGGIVVFSNCSLD 369
            GG++V  +CS+ 
Sbjct: 329 RGGLLVSGSCSMH 341


>gi|330961454|gb|EGH61714.1| hypothetical protein PMA4326_23191 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 314

 Score = 40.7 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 8/145 (5%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277
           F    +    +           ++    +      GG    +   GA V A+D++ + L 
Sbjct: 113 FGPDTYRFAQSINRHLQNTSHPISRAVDIGCGTGAGGLLIAVACPGAHVYAVDINPKALH 172

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
               N     L+  +    D         FD ++ + P        +             
Sbjct: 173 FAETNAAVAGLHNVECCPSDILSGVTGN-FDLIVANPP---YMKDSKRRAYRH----GGD 224

Query: 338 VKSACFQRKLLLQGISFVKPGGIVV 362
              A    ++L + +  + PGG +V
Sbjct: 225 ALGADLSVRILRESVDRLTPGGSLV 249


>gi|315223935|ref|ZP_07865780.1| antitermination factor [Capnocytophaga ochracea F0287]
 gi|314946107|gb|EFS98111.1| antitermination factor [Capnocytophaga ochracea F0287]
          Length = 313

 Score = 40.7 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 30  DLEYGDSAFRLLSQRDQILVRAIVN-VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88
           D  +  S ++   ++D   +  ++    L      + ++  +      R       LL++
Sbjct: 195 DKYFVPSLYKDEEEKD--FLTGLLKKAVLNDSKWENEIISRMTGWEKDRVAVIDSILLKM 252

Query: 89  SVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
           +V ++L +  +     ++  +E AK     +  A  +N +++ V +
Sbjct: 253 AVCEMLSFPSIPVKVTLNEYLELAKEYSTTKSSA-FINGVMKNVHK 297


>gi|326389917|ref|ZP_08211480.1| Protein of unknown function methylase putative [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993977|gb|EGD52406.1| Protein of unknown function methylase putative [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 391

 Score = 40.7 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 245 VLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----- 298
           VLD  +  G  T   +  G  +V  +D+S+  +E  + N++            D      
Sbjct: 220 VLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQERCDFVCDNAFDLL 279

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD +++D P              +T+  + +  +    +++ L+ +  ++ 
Sbjct: 280 RRYDKESRKFDTIILDPPA-------------FTKSKETVKDALRGYKEINLRALKILRE 326

Query: 358 GGIVVFSNCS--LDKQDSEEVVQKVLRSSPIPVELV 391
           GG ++  +CS  +      +V+++    +   V LV
Sbjct: 327 GGFLITCSCSQHIKPDMFLDVIKEAANDAKRNVRLV 362


>gi|213622810|ref|ZP_03375593.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 43

 Score = 40.7 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 1  MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL 48
          MK   N R +++  +  V+ +  SL+ +L         + ++ +D+ L
Sbjct: 1  MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKAL 43


>gi|309776359|ref|ZP_07671346.1| putative methyltransferase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915878|gb|EFP61631.1| putative methyltransferase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 415

 Score = 40.7 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 20/137 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAED------IIEM 296
            VLD     G         GAK   A+D+S+  ++  + +  R HL          + E+
Sbjct: 243 HVLDCFTHTGSFALNAARGGAKHVHAVDISQTAIDMAQEHAKRNHLEERMSFETADVFEL 302

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   +++D +++D P              +T+  + I  +    R++    +  + 
Sbjct: 303 LKELKKQPRIYDMIILDPPA-------------FTKSRETISHAVKGYRQINTAAMKLLP 349

Query: 357 PGGIVVFSNCSLDKQDS 373
            GG +   +CS    + 
Sbjct: 350 RGGYLATCSCSHFMNEG 366


>gi|281418183|ref|ZP_06249203.1| putative RNA methylase [Clostridium thermocellum JW20]
 gi|281409585|gb|EFB39843.1| putative RNA methylase [Clostridium thermocellum JW20]
          Length = 409

 Score = 40.7 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 21/132 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            VLD     G       + GA+     D+S+  ++  + N  R  L  +     +     
Sbjct: 236 RVLDCFTHTGSFGLNAALGGAEHVTCVDISQSAIDMAKSNAVRNGLDGKMDFVCEDVFDL 295

Query: 302 ------CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                      +D +++D P              +T+    +  +A   +++ L+ +  +
Sbjct: 296 LTKLAEQKCHDYDYIILDPPA-------------FTKSRKTVQSAARGYKEINLKAMKLL 342

Query: 356 KPGGIVVFSNCS 367
             GG +   +CS
Sbjct: 343 PRGGYLATCSCS 354


>gi|330965059|gb|EGH65319.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI++ ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILISASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|330874682|gb|EGH08831.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI++ ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILISASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|167036166|ref|YP_001671397.1| hypothetical protein PputGB1_5177 [Pseudomonas putida GB-1]
 gi|166862654|gb|ABZ01062.1| conserved hypothetical protein [Pseudomonas putida GB-1]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 20/138 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAE------DIIEM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +      D+ E 
Sbjct: 223 RVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEKLTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAAEERFDVIIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRMLN 329

Query: 357 PGGIVVFSNCSLDKQDSE 374
             GI+V ++CS+   + +
Sbjct: 330 KDGILVSASCSMHLPEDD 347


>gi|330812398|ref|YP_004356860.1| hypothetical protein PSEBR_a5353 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380506|gb|AEA71856.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH----LYAE--DIIEM 296
            VLDL +  GG   Q    GA      D S   L+ +  N         L     D+ E 
Sbjct: 223 RVLDLFSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGFAEKLTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKASEERFDVIVADPPA-------------FIKRKKDLKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI+V ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILVSASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|322822240|gb|EFZ28354.1| hypothetical protein TCSYLVIO_5418 [Trypanosoma cruzi]
          Length = 1028

 Score = 40.7 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           GG+VV++  S++  ++E V+  VL   
Sbjct: 566 GGVVVYATHSMNPLENEAVICSVLTEF 592


>gi|302417646|ref|XP_003006654.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261354256|gb|EEY16684.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 550

 Score = 40.7 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 66/447 (14%), Positives = 125/447 (27%), Gaps = 59/447 (13%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDF--VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
             V A+   T ++   +  V++   +L     RK   +  LL V      +L       +
Sbjct: 36  AQVYALATETCKWSEVLKEVIEKTDLLRH--ERKLTPILALLLV----HDFLLAKSGIAL 89

Query: 105 DLAVEQAKRDKENR-HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163
                       ++      +     R     +E L+    ++  PE    R        
Sbjct: 90  PQTHGLRSAIDRHKARLTSEMTRARLRRKAPTLEALRADINLAADPEGRHPRWVRINAVR 149

Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEG 221
             L    +     +  +    D+        ++ L      L  +     +     + +G
Sbjct: 150 TDLETQLSTTFKDFTRVMSIADVAASTMASRSLYLDEHVPNLVAVSPGIDLTKTQAYHDG 209

Query: 222 VWWVQDASASIPVQLFGT-LNNLSVLD-----------LCAAPGGKTAQLIVSGAKVTAL 269
              +QD ++  P  LF     N  ++D           +    G      I  G   T +
Sbjct: 210 EIILQDKASCFPAYLFDPRAENGDIIDSNDKRALTLEKMVKTAGSNKMTRIGMGQDFTGV 269

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPD 327
           D        +   L         I+  D+    + P+    A     P   +  +     
Sbjct: 270 DPKASLYANVGALLLDPSCSGSGIVGRDSMPKLHLPEGPVGAGPRKGPAKPSPPVAAAEG 329

Query: 328 VLWTRDTDDIVKS---------------------------ACFQRKLLLQGISFVKPGGI 360
               R   D  ++                           + FQ  LLL  + F  P   
Sbjct: 330 KKRKRQETDEAQAKAVLVDDDGNTTEVASEQDLQKRLDALSGFQLTLLLHAMKFPPPK-R 388

Query: 361 VVFSNCSLDKQDS---EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIR 414
           V FS CS+  ++          V R       ++P  +      +  +    E   G  +
Sbjct: 389 VTFSACSIHAEEDGARRRQGAAVGRGKEAGWRILPRETQVSGMREWPVRGDVEAAGGDEK 448

Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441
           +    +   +G   G+ GFF  A  R+
Sbjct: 449 VAEACIRAHEGDGRGVMGFFVAAFERV 475


>gi|104779566|ref|YP_606064.1| hypothetical protein PSEEN0284 [Pseudomonas entomophila L48]
 gi|95108553|emb|CAK13247.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 20/138 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAE------DIIEM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +      D+ E 
Sbjct: 223 RVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEKLTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAAEERFDVIIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRMLN 329

Query: 357 PGGIVVFSNCSLDKQDSE 374
             GI+V ++CS+   + +
Sbjct: 330 KDGILVSASCSMHLPEDD 347


>gi|26991803|ref|NP_747228.1| hypothetical protein PP_5127 [Pseudomonas putida KT2440]
 gi|24986915|gb|AAN70692.1|AE016712_10 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 20/138 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAE------DIIEM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +      D+ E 
Sbjct: 223 RVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEKLTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAAEERFDVIIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRMLN 329

Query: 357 PGGIVVFSNCSLDKQDSE 374
             GI+V ++CS+   + +
Sbjct: 330 KDGILVSASCSMHLPEDD 347


>gi|148550203|ref|YP_001270305.1| hypothetical protein Pput_5001 [Pseudomonas putida F1]
 gi|148514261|gb|ABQ81121.1| SAM-dependent methyltransferase [Pseudomonas putida F1]
 gi|313501103|gb|ADR62469.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 20/138 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAE------DIIEM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +      D+ E 
Sbjct: 223 RVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEKLTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAAEERFDVIIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRMLN 329

Query: 357 PGGIVVFSNCSLDKQDSE 374
             GI+V ++CS+   + +
Sbjct: 330 KDGILVSASCSMHLPEDD 347


>gi|28867642|ref|NP_790261.1| hypothetical protein PSPTO_0412 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850877|gb|AAO53956.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331014955|gb|EGH95011.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI++ ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILISASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|317055290|ref|YP_004103757.1| methyltransferase small [Ruminococcus albus 7]
 gi|315447559|gb|ADU21123.1| methyltransferase small [Ruminococcus albus 7]
          Length = 409

 Score = 40.7 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 22/174 (12%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDYC 302
           VLD     G         GA    A+DVS+  ++  + N +R  L  +   +  D FD  
Sbjct: 238 VLDCFTHTGSFALNAAFGGAAHVTAVDVSQFAVDTAKANAERNGLSDKMDFVCGDVFDLL 297

Query: 303 PKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
           PK       +D +++D P              +T+    +  +    +++  + +  +  
Sbjct: 298 PKLTEEKAGYDFIILDPPA-------------FTKSRKTVNSAERGYKEINYRAMKMLPR 344

Query: 358 GGIVVFSNCSLDKQDSEEVVQKVL-RSSPIPVELVPLNSAYWKSIDMAMALSPE 410
           GG +   +CS     +E  V+ ++  +     +L  + +         +   PE
Sbjct: 345 GGYLATCSCS-HFMTNELFVKMLMSAAHDAGFQLKLVEARQQAPDHPILMNVPE 397


>gi|187736308|ref|YP_001878420.1| SAM-dependent methyltransferase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426360|gb|ACD05639.1| putative SAM-dependent methyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 394

 Score = 40.7 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 27/138 (19%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD     GG      ++GA    A+DVS+  ++ +  N     +  + + +       
Sbjct: 216 RVLDCFCNQGGFALACALAGASEVTAVDVSQDAMDAVARNARLNGVSVQCVTDNAFDFLK 275

Query: 303 PK---------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
            +           +D +++D P              +TR+   +  +    +++ L+ + 
Sbjct: 276 KEAALVRDGGEHKWDLIILDPPS-------------FTRNKKSVHDAMRGYKEIHLRAMK 322

Query: 354 FVKPGGIVVFSN--CSLD 369
            + PGGI+  S   CS  
Sbjct: 323 LLAPGGIL--STFCCSHH 338


>gi|256004628|ref|ZP_05429605.1| putative RNA methylase [Clostridium thermocellum DSM 2360]
 gi|255991363|gb|EEU01468.1| putative RNA methylase [Clostridium thermocellum DSM 2360]
 gi|316941278|gb|ADU75312.1| SAM-dependent methyltransferase [Clostridium thermocellum DSM 1313]
          Length = 409

 Score = 40.7 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 21/132 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            VLD     G       + GA+     D+S+  ++  + N  R  L  +     +     
Sbjct: 236 RVLDCFTHTGSFGLNAALGGAEHVTCVDISQSAIDMAKANAVRNGLDGKMDFVCEDVFDL 295

Query: 302 ------CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                      +D +++D P              +T+    +  +A   +++ L+ +  +
Sbjct: 296 LTKLAEQKCHDYDYIILDPPA-------------FTKSRKTVQSAARGYKEINLKAMKLL 342

Query: 356 KPGGIVVFSNCS 367
             GG +   +CS
Sbjct: 343 PRGGYLATCSCS 354


>gi|333031441|ref|ZP_08459502.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011]
 gi|332742038|gb|EGJ72520.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011]
          Length = 308

 Score = 40.7 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQ-ILYLDVA 99
              DQ     ++   +       +++     +  L R       L++ ++A+ + + ++ 
Sbjct: 205 DDEDQEFAVRLLRQAIENEEYYRSLIGTHTKNWELDRIALMDVVLMQCALAEVLSFPNIP 264

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
                +  ++ AK    ++     +N  L  +  +
Sbjct: 265 LSVTFNEYLDLAKLYSTHKS-GGFINGTLDSIINQ 298


>gi|213967814|ref|ZP_03395961.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301382451|ref|ZP_07230869.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061157|ref|ZP_07252698.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
           K40]
 gi|302132050|ref|ZP_07258040.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927590|gb|EEB61138.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 398

 Score = 40.7 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAGEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
             GI++ ++CS+   + +     +L            +           +  A++   +I
Sbjct: 330 KDGILISASCSMHLPEDDLQ--NILLTSARHLDRNIQLLERGGQGPDHPVHPAIAETRYI 387

Query: 414 -----RITPD 418
                R+ P+
Sbjct: 388 KSITCRLLPN 397


>gi|125974030|ref|YP_001037940.1| SAM-dependent methyltransferase [Clostridium thermocellum ATCC
           27405]
 gi|125714255|gb|ABN52747.1| SAM-dependent methyltransferase [Clostridium thermocellum ATCC
           27405]
          Length = 409

 Score = 40.7 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 21/132 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            VLD     G       + GA+     D+S+  ++  + N  R  L  +     +     
Sbjct: 236 RVLDCFTHTGSFGLNAALGGAEHVTCVDISQSAIDMAKANAVRNGLDGKMDFVCEDVFDL 295

Query: 302 ------CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                      +D +++D P              +T+    +  +A   +++ L+ +  +
Sbjct: 296 LTKLAEQKCHDYDYIILDPPA-------------FTKSRKTVQSAARGYKEINLKAMKLL 342

Query: 356 KPGGIVVFSNCS 367
             GG +   +CS
Sbjct: 343 PRGGYLATCSCS 354


>gi|307267036|ref|ZP_07548551.1| Protein of unknown function methylase putative [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306917961|gb|EFN48220.1| Protein of unknown function methylase putative [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 391

 Score = 40.7 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 22/156 (14%)

Query: 245 VLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRC------NLDRLHLYAEDIIEMD 297
           VLD  +  G  T   +  G  +V  +D+S+  +E  +         +R +   ++  ++ 
Sbjct: 220 VLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEIAKKNVELNGYQERCNFVCDNAFDLL 279

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD V++D P              +T+  + +  +    +++ L+ +  ++ 
Sbjct: 280 RRYDKESRKFDTVILDPPA-------------FTKSKETVKDALRGYKEINLRALKILRE 326

Query: 358 GGIVVFSNCS--LDKQDSEEVVQKVLRSSPIPVELV 391
           GG ++  +CS  +       V+++    +   V LV
Sbjct: 327 GGFLITCSCSQHIKPDMFLGVIKEAANDAKRNVRLV 362


>gi|325270436|ref|ZP_08137040.1| NusB family protein [Prevotella multiformis DSM 16608]
 gi|324987232|gb|EGC19211.1| NusB family protein [Prevotella multiformis DSM 16608]
          Length = 385

 Score = 40.7 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+     +   T+         +     +    R  Y    ++++++A++L + ++ 
Sbjct: 204 DEEDRDFAVKLFRATILNADDYQHYMSESSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIP 263

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159
               ++  V+ AK           +N +L  ++R  ++  +    +  +PE  + R  N 
Sbjct: 264 VSVTINEYVDLAK-LYSTPRSGGYINGMLDTIARHLVQTGK---MLKPMPEPRQRRPHNV 319

Query: 160 YGKERV 165
              +R 
Sbjct: 320 RPDDRA 325


>gi|108762676|ref|YP_630223.1| hypothetical protein MXAN_1988 [Myxococcus xanthus DK 1622]
 gi|108466556|gb|ABF91741.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 398

 Score = 40.3 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 18/129 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-----A 298
             LDL +  GG    L  +   V A++  ++   + + N +        +   +      
Sbjct: 228 DALDLFSYHGGFALSLSRTCTSVLAVEQDEKAAARAKANAEANGRANVTVENANAFDVLR 287

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                 + FD V++D P  +             +  + +  +     +L L+    +KP 
Sbjct: 288 RFDTSGRRFDTVVLDPPGLA-------------KRREGLATALRAYHELNLRAFRCLKPD 334

Query: 359 GIVVFSNCS 367
           G++V  +CS
Sbjct: 335 GLLVTCSCS 343


>gi|332088462|gb|EGI93580.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella boydii 5216-82]
          Length = 310

 Score = 40.3 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G        +   A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIVCAYVFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|310820054|ref|YP_003952412.1| ArsR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393126|gb|ADO70585.1| Transcriptional regulator, ArsR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 298

 Score = 40.3 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 21/146 (14%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
              E +     + +     L   L  L V D     G  +  +     +V A+D +   L
Sbjct: 110 ALNERLLEPGQSWSLWASALASLLPPLDVADFGCGSGTLSVAIARWARRVWAIDQNPEAL 169

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            + +    R        +  +                              V+ ++    
Sbjct: 170 AQAKERATREGRSNIQFLCENLHRLSLPS-----------------GERDLVIISQSLHH 212

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVV 362
           +   A     +L +    +KPGG +V
Sbjct: 213 VESPAA----VLAEAWRLLKPGGKLV 234


>gi|239939498|ref|ZP_04691435.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239985987|ref|ZP_04706651.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
          Length = 255

 Score = 40.3 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 8/156 (5%)

Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA 268
           P  +V  PG           + ++  +  G      +LDLC   G         GA+VTA
Sbjct: 39  PGRVVRFPGVYRPQTDTLLLALAMRREGIGP--GTDLLDLCTGSGALALHAARLGARVTA 96

Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP--CSSTGTIRRHP 326
           +D+S+R +   R N     L    +   D     P + FDAV+ + P   +    + RH 
Sbjct: 97  VDISRRAVASARLNTALARLP-VTVRRGDLLRALPGRTFDAVVSNPPYVPAPGLALPRHG 155

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                    D         ++     + ++PGG+++
Sbjct: 156 PGRSWDAGPDGRVILD---RICDDAFAALRPGGLLL 188


>gi|224538936|ref|ZP_03679475.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519454|gb|EEF88559.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 308

 Score = 40.3 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K  +   LL             + DQ   R +    +        ++   
Sbjct: 182 VLKTIKRFEAKNGANQTLLPEFK--------DEEDQEFARRLFRRAILNCDYYRHLISEN 233

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +  L R  +    +++ ++A+IL + ++     ++  VE AK     +  +
Sbjct: 234 TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTIKSGS 286


>gi|289548756|ref|YP_003473744.1| hypothetical protein Thal_0985 [Thermocrinis albus DSM 14484]
 gi|289182373|gb|ADC89617.1| protein of unknown function Met10 [Thermocrinis albus DSM 14484]
          Length = 391

 Score = 40.3 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 245 VLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---- 299
            LDL    GG    +   G  +V A+D+S   LE  + N    +L     +E +AF    
Sbjct: 221 CLDLFCHTGGFALNMKRKGAKEVIAVDISAPALETGKKNAQLNNLDGIHWVEDNAFDFLR 280

Query: 300 -DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
             +     FD V++D P              +T+    +  +    ++L ++G+   K G
Sbjct: 281 KMHKEGNQFDVVVIDPPS-------------FTKTKASLENALRGYKELCVRGLHVTKRG 327

Query: 359 GIVVFSNCSLD 369
           G +   +CS  
Sbjct: 328 GYLAIYSCSFH 338


>gi|220918947|ref|YP_002494251.1| protein of unknown function Met10 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956801|gb|ACL67185.1| protein of unknown function Met10 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 389

 Score = 40.3 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 18/131 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301
             LD  +  GG    L     +VTA+++       LR N         +++E +AFDY  
Sbjct: 219 RCLDCFSYAGGFALHLARRAERVTAVEMQPVAAGLLRENAALNRAENLEVVEENAFDYLR 278

Query: 302 ---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                +  FD V++D P              + ++ + +  +    +++ L+ +  + PG
Sbjct: 279 DRSEEEPAFDLVVLDPPA-------------FAKNKESLPAARRGYKEVNLRALQVLVPG 325

Query: 359 GIVVFSNCSLD 369
           GI+V ++CS  
Sbjct: 326 GILVTASCSYH 336


>gi|260591412|ref|ZP_05856870.1| NusB family protein [Prevotella veroralis F0319]
 gi|260536604|gb|EEX19221.1| NusB family protein [Prevotella veroralis F0319]
          Length = 357

 Score = 40.3 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+     +   T+         +     +    R  Y    ++++++A+++ + ++ 
Sbjct: 204 DEEDREFAVKLFRSTILNADEYQRYMSESSRNWDFSRLAYMDVVIMQIAIAEMMTFPNIP 263

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGIS 146
               ++  V+ AK           +N +L  ++R  I+  + +  + 
Sbjct: 264 ATVTINEYVDLAK-LYSTPRSGGYINGMLDTIARHLIQTGKMMKAMP 309


>gi|197124168|ref|YP_002136119.1| hypothetical protein AnaeK_3779 [Anaeromyxobacter sp. K]
 gi|196174017|gb|ACG74990.1| protein of unknown function Met10 [Anaeromyxobacter sp. K]
          Length = 389

 Score = 40.3 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 18/131 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301
             LD  +  GG    L     +VTA+++       LR N         +++E +AFDY  
Sbjct: 219 RCLDCFSYAGGFALHLARRAERVTAVEMQPVAAGLLRENAALNRAENLEVVEENAFDYLR 278

Query: 302 ---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                +  FD V++D P              + ++ + +  +    +++ L+ +  + PG
Sbjct: 279 DRSEEEPAFDLVVLDPPA-------------FAKNKESLPAARRGYKEVNLRALQVLVPG 325

Query: 359 GIVVFSNCSLD 369
           GI+V ++CS  
Sbjct: 326 GILVTASCSYH 336


>gi|302672210|ref|YP_003832170.1| hypothetical protein bpr_I2858 [Butyrivibrio proteoclasticus B316]
 gi|302396683|gb|ADL35588.1| hypothetical protein bpr_I2858 [Butyrivibrio proteoclasticus B316]
          Length = 431

 Score = 40.3 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 20/136 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAE------DIIEM 296
            VLD     G         GA     +D S     +   N     L         D+ E+
Sbjct: 256 KVLDCFTHTGSFALNAAAGGASSVLGVDASDLGCRQAEENAALNGLEKIASFQCADVFEL 315

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V++D P              +T+    I K+A   +++ ++G+  VK
Sbjct: 316 LPDLEKKGEKFDVVILDPPA-------------FTKSRASIKKAATGYKEINMRGMKLVK 362

Query: 357 PGGIVVFSNCSLDKQD 372
            GG +   +CS    +
Sbjct: 363 DGGYLATCSCSHFMDE 378


>gi|215487543|ref|YP_002329974.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215265615|emb|CAS10018.1| N5-glutamine methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 310

 Score = 40.3 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLVSGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|149910954|ref|ZP_01899585.1| tellurite resistance protein TehB [Moritella sp. PE36]
 gi|149806021|gb|EDM66005.1| tellurite resistance protein TehB [Moritella sp. PE36]
          Length = 194

 Score = 40.3 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 17/149 (11%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
           +  + + S  V+    +     LD+  + G     L   G  VTA+D++   ++ L+  +
Sbjct: 9   YGLNPAHSEVVEACKFIEPCDTLDMGCSNGRNALFLGQLGFNVTAIDINPGAIDMLQSII 68

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
               L        D       + +D       C+ T       +V            A  
Sbjct: 69  TEEKLDNIKAQVHDINSASLGEGYDKGYGFISCTVTLMFISPANV--------DAVLADM 120

Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQD 372
           Q++         +PGG  +   C++  ++
Sbjct: 121 QKRT--------QPGGYNL-IVCAMSTEE 140


>gi|330507402|ref|YP_004383830.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328928210|gb|AEB68012.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 217

 Score = 40.3 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 29/151 (19%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA- 298
             + S+L++    G          A+V A+D+S   L+  R       +     +     
Sbjct: 34  KPHHSLLEIGTGTGEFALAAARRCARVYAIDISPGMLQYAREKSQGQGISNISFLVGGFL 93

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
             +      DA++             H    W              +  LL   S ++PG
Sbjct: 94  TYHHHDGPLDAIVSQ-------IAMHHLPDFWK-------------QIALLNIASMLRPG 133

Query: 359 GIV-----VFSNCSLDKQDSEEVVQKVLRSS 384
           G +     V+   S D  D E  +++ +  +
Sbjct: 134 GRLCLRDIVY---SFDPGDYERQIERFISKT 161


>gi|163792511|ref|ZP_02186488.1| Predicted SAM-dependent methyltransferase [alpha proteobacterium
           BAL199]
 gi|159182216|gb|EDP66725.1| Predicted SAM-dependent methyltransferase [alpha proteobacterium
           BAL199]
          Length = 396

 Score = 40.3 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 20/135 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYA-EDIIEMD---- 297
            VLDL A  GG   Q  V+GA     +D S   L+      +   +       + D    
Sbjct: 224 RVLDLYAHTGGFGVQCAVAGAFQVDLIDRSGPALQVAALAAEMSGVTDRVTTRKADAFAA 283

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + +D V+ D P              + +   D+  +A   RKL         
Sbjct: 284 LEHLITAGETYDVVICDPPA-------------FAKSRKDVGGAAKAYRKLARLAAQVTA 330

Query: 357 PGGIVVFSNCSLDKQ 371
           PGG+++ ++CS   +
Sbjct: 331 PGGVLMLASCSFHME 345


>gi|159900218|ref|YP_001546465.1| hypothetical protein Haur_3701 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893257|gb|ABX06337.1| protein of unknown function Met10 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 394

 Score = 40.3 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 29/238 (12%)

Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYID---------LTVKFDIETWAHKLNA 195
           +    +W   +L           I  A    + +          +  +  +      L  
Sbjct: 116 VDRFADWLVVQLLTQGAVAHTAIIVAALAELMPVRGIYERSDVEIRAREGLGEAEGLLWG 175

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
              P      +   E ++ L G  +  W+V        V  +   +   +       G +
Sbjct: 176 EAPPDQLTIRENGYEFVLDLAGGQKTGWYVDQRINRQRVAQY-AKDAEVLGVFSYTGGFE 234

Query: 256 TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFD-----YCPKKLFDA 309
                     +TA+D S   L  L  NL +  L      +E DAF          K +D 
Sbjct: 235 VLAAGAGAQSITAVDSSAAALRGLHTNLSQNGLNTPVTAVEGDAFKILRQLREEGKQYDL 294

Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367
           +++D P              +      I ++    + + +Q    ++PGG++   +CS
Sbjct: 295 IVLDPP-------------KFAHSQSQIDRATRGYKDINMQAFHLLRPGGVLATFSCS 339


>gi|167772467|ref|ZP_02444520.1| hypothetical protein ANACOL_03845 [Anaerotruncus colihominis DSM
           17241]
 gi|167665570|gb|EDS09700.1| hypothetical protein ANACOL_03845 [Anaerotruncus colihominis DSM
           17241]
          Length = 404

 Score = 40.3 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 20/131 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301
            VLD     G         GA    A+DVS+  +   R N  R  L      +       
Sbjct: 232 RVLDCFTHTGSFALNAAHGGAAYVRAVDVSETAVTLARDNAVRNGLDGVIECQAANVFDL 291

Query: 302 -----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD +++D P              +T+    +  +    +++ L+ +  + 
Sbjct: 292 LPELEAAGERFDFIILDPPA-------------FTKSRRTVGGAQRGYKEINLRAMKLLP 338

Query: 357 PGGIVVFSNCS 367
            GG +   +CS
Sbjct: 339 RGGYLATCSCS 349


>gi|115378884|ref|ZP_01466022.1| SAM-dependent methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115364123|gb|EAU63220.1| SAM-dependent methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 276

 Score = 40.3 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 21/146 (14%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
              E +     + +     L   L  L V D     G  +  +     +V A+D +   L
Sbjct: 88  ALNERLLEPGQSWSLWASALASLLPPLDVADFGCGSGTLSVAIARWARRVWAIDQNPEAL 147

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            + +    R        +  +                              V+ ++    
Sbjct: 148 AQAKERATREGRSNIQFLCENLHRLSLPS-----------------GERDLVIISQSLHH 190

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVV 362
           +   A     +L +    +KPGG +V
Sbjct: 191 VESPAA----VLAEAWRLLKPGGKLV 212


>gi|154343575|ref|XP_001567733.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065065|emb|CAM43178.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1217

 Score = 40.3 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 339 KSACFQRKLLLQGISFVK--PGGIVVFSNCSLDKQDSEEVVQKVLRS 383
             +  Q++ L   I  V+   GG V+++  S +  ++E VV  VL+ 
Sbjct: 633 NFSKLQKQ-LYAAIRAVRADSGGWVIYATQSANVIENEAVVCAVLQR 678


>gi|320334312|ref|YP_004171023.1| PUA domain-containing protein [Deinococcus maricopensis DSM 21211]
 gi|319755601|gb|ADV67358.1| PUA domain containing protein [Deinococcus maricopensis DSM 21211]
          Length = 389

 Score = 40.3 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 19/129 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL------EKLRCNLDRLHLYAEDIIEMD 297
           + LD  +  GG +     +GAK  A+D     L       +         +   D IE+ 
Sbjct: 218 TFLDAYSYTGGFSLHAARAGAKAVAVDKDPVALGTLEAVARANGLDRHTGVRLGDAIEVL 277

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FDAV++D P  +             +  DD+ ++         + +  +KP
Sbjct: 278 TQLEREGRTFDAVVLDPPTLA-------------KRKDDVPRAKRVFTDGTARALRMLKP 324

Query: 358 GGIVVFSNC 366
           GG ++ S C
Sbjct: 325 GGHLLISTC 333


>gi|167462201|ref|ZP_02327290.1| Predicted SAM-dependent methyltransferase [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322383642|ref|ZP_08057393.1| AdoMet-dependent methyltransferase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151854|gb|EFX44797.1| AdoMet-dependent methyltransferase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 454

 Score = 40.3 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 45/381 (11%), Positives = 98/381 (25%), Gaps = 57/381 (14%)

Query: 17  CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI----D--AVL--- 67
             +           +     +++ L Q D       +   +    R     D   ++   
Sbjct: 47  QYLASGYY-NPASRITVRVVSYKPLEQMDTTFFTERIRQCMEHRRRFLPGTDSYRLIYGE 105

Query: 68  DFVLISSLPRKKYSLQQL--LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125
              L   +  K   +  +  L +       +D+   +VVD  V+              V 
Sbjct: 106 ADFLPGLIVDKFADVLVVQFLTLG------MDIRKKSVVDALVQVVGPSGIYERSDVPVR 159

Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185
            +      + +   +    + I+       ++ + G++                L   + 
Sbjct: 160 ELEELEQSKGVLYGECPRHVRILENGLHLEVDIWEGQKTGYFFDQRDNRASIAPLMKGWG 219

Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245
             +        +              IV  P +                         +V
Sbjct: 220 GRSGIALCKMEVDGKEQEVPVNKNGKIVQFPYWDGA----------------------TV 257

Query: 246 LDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYA-------------- 290
           L+  +  G  T      GAK     D+S+  ++  R N+                     
Sbjct: 258 LECFSHTGSFTLNACKYGAKKVTCLDISEHAIQSARTNVGLNGFEDRVEFVVADAFQYLR 317

Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLL 348
           E +  +D      +     V    P S   T          + +    +  +    + + 
Sbjct: 318 EQVHGLDQRKARAEASERKVDTSVPLSGGRTWDVVILDPPAFAKTKGAVESACRGYKDIN 377

Query: 349 LQGISFVKPGGIVVFSNCSLD 369
           L G+  V  GG +V ++CS  
Sbjct: 378 LHGMKLVNEGGYLVTASCSYH 398


>gi|126331122|ref|XP_001371993.1| PREDICTED: similar to Fraser syndrome 1 [Monodelphis domestica]
          Length = 3967

 Score = 40.3 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/260 (10%), Positives = 52/260 (20%), Gaps = 9/260 (3%)

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156
           +V   A      E   R K   H     +      +     +     G           L
Sbjct: 44  EVFRIAANKCCPECVLRTKGLCHHEGKTHGHGTEWTAAPCTICSCSHGEVRCTPKPCPHL 103

Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216
               G   + +I +    P  +       ++            +   +      + +   
Sbjct: 104 --SCGSHELESIPENACCPKCVGSGKPCSLDGRLLLDGEEWQLSQCSKYTCRNGTPLCFT 161

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276
              + +   QD                              Q   +       D      
Sbjct: 162 VQCQPLLCGQDEEVIRFPGKCCPQCLPRHCSSDGKVYQHGEQWTENACTTCVCD------ 215

Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
            K      +         +     + PK+  D             I R+ D +W     +
Sbjct: 216 -KGETRCHKHECPPLTCEKGQHKVHHPKECCDKCRSSTGHCLYDGILRYHDEMWKSSPCE 274

Query: 337 IVKSACFQRKLLLQGISFVK 356
                  Q    +   + VK
Sbjct: 275 FCICNRGQVTCHIGECATVK 294


>gi|115956198|ref|XP_001190319.1| PREDICTED: similar to GA19423-PA [Strongylocentrotus purpuratus]
          Length = 305

 Score = 40.3 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 225 VQDASASIPVQLFGT---LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRC 281
            ++ S+     L G         +LD+    G  +  L+  G +V + D ++  L   R 
Sbjct: 58  WEERSSKYKNWLLGVLQSKKCHRILDVACGKGVDSLFLLEQGMEVVSCDDAEAMLFYARS 117

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
              RL L    I   +          +       C  +  +             D+    
Sbjct: 118 QKTRLGLIDWVIKRANWLTLSEDLPDEEPFDAVLCLGSSILH----------LLDLPPEL 167

Query: 342 CFQRKLLLQGISFVKPGGIVV 362
              RK L     F+KPGG+++
Sbjct: 168 GLYRKCLTNFRKFLKPGGLLL 188


>gi|317051327|ref|YP_004112443.1| NusB/RsmB/TIM44 [Desulfurispirillum indicum S5]
 gi|316946411|gb|ADU65887.1| NusB/RsmB/TIM44 [Desulfurispirillum indicum S5]
          Length = 133

 Score = 40.3 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 46/134 (34%), Gaps = 6/134 (4%)

Query: 3   SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62
           +  N R  +  L   +     S           ++   +   +    R +V ++L+  P 
Sbjct: 6   TRRNQRENALKLNYALQIFSGSFDE--PHIQRTASQFGMEVTE--FTRELVQISLQANPA 61

Query: 63  IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122
              +++ +  +      +  + L+   + ++         V++  +E AK      +  +
Sbjct: 62  CGQLIESLAKND-DMIAHLDRILMIQGMCELSMKHSPAQTVINEYIELAK-LYGAENSFR 119

Query: 123 LVNSILRRVSREKI 136
            VN ++ +   +  
Sbjct: 120 FVNVVMNQYKEDHP 133


>gi|313897900|ref|ZP_07831441.1| putative 23S rRNA m5C1962 methyltransferase [Clostridium sp. HGF2]
 gi|312957435|gb|EFR39062.1| putative 23S rRNA m5C1962 methyltransferase [Clostridium sp. HGF2]
          Length = 410

 Score = 40.3 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 20/137 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCN------LDRLHLYAEDIIEM 296
            VLD     G         GA  V A+D+S+  ++  + +       +R+     D+ ++
Sbjct: 238 HVLDCFTHTGSFALNAAKGGAAHVHAVDISQTAIDMAQHHADINGLQERMSFETADVFDL 297

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   +++D +++D P              +T+  + I  +    R++    +  + 
Sbjct: 298 LKALKKQPRVYDMIILDPPA-------------FTKSRETISHAVKGYREINTAAMKLLP 344

Query: 357 PGGIVVFSNCSLDKQDS 373
            GG +   +CS    + 
Sbjct: 345 RGGYLATCSCSHFMNEG 361


>gi|312797048|ref|YP_004029970.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
          454]
 gi|312168823|emb|CBW75826.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
          454]
          Length = 112

 Score = 40.3 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 9  LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
           +++  L   +    +   +         F    + D+    A+++  ++    +   L 
Sbjct: 12 ELATQGLYQWLLSGAAPGEIDAAMREQPGF---DKADRDHFDALLHGVIKQAATLTEALM 68

Query: 69 FVLISS 74
            L S 
Sbjct: 69 PFLESP 74


>gi|325117344|emb|CBZ52896.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 851

 Score = 40.3 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392
           + A FQR LL   +S      +  +S CS   +++E V+  VL  S        
Sbjct: 601 QLARFQRTLLSHALSTFPKLLLCCYSTCSSYVEENEAVLAHVLGQSGDAAAEEA 654


>gi|294101117|ref|YP_003552975.1| methyltransferase small [Aminobacterium colombiense DSM 12261]
 gi|293616097|gb|ADE56251.1| methyltransferase small [Aminobacterium colombiense DSM 12261]
          Length = 402

 Score = 39.9 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 21/132 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD     G      +  GA+   A++ S+  L   R NL    L ++D+       + 
Sbjct: 227 DVLDCFCFQGHFGLHALHWGARSVTAVEQSEEALAVYRENLQMNGLSSKDVDLRHGNAFD 286

Query: 303 P-------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                   KKL+D +++D P              ++     I  +    ++L L+    +
Sbjct: 287 ELRRLEGEKKLYDIIIMDPPP-------------FSPGKAQIESARRGYKELALRAYRLL 333

Query: 356 KPGGIVVFSNCS 367
           +P G++++  CS
Sbjct: 334 RPEGVLLYLCCS 345


>gi|269219633|ref|ZP_06163487.1| putative methyltransferase small domain protein [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269210875|gb|EEZ77215.1| putative methyltransferase small domain protein [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 219

 Score = 39.9 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 24/120 (20%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYC 302
           + LD+    G +   L   G  VT  D+S   L K R   +   L  A   +E D   + 
Sbjct: 45  TALDVGCGAGAEAVWLAEQGWDVTGADISPTALAKARRRAEAAGLGSAVRWVEADLMAWE 104

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           P + +D V+                                Q     +   +V PGG ++
Sbjct: 105 PGERWDLVMT-----------------------SYAHPPGSQIDFYRRISRWVAPGGTLL 141


>gi|15605998|ref|NP_213375.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
 gi|2983178|gb|AAC06779.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
          Length = 380

 Score = 39.9 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 19/181 (10%)

Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290
           +             VLDL    GG +      GAKV  +D++KR +E  R N     + A
Sbjct: 200 NREYVRNLVKEGDRVLDLFCYSGGFSVYCANRGAKVVGVDINKRAVELARENAKLNSVKA 259

Query: 291 EDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
           + +      F    K+ +D ++ D P                +   +         KL  
Sbjct: 260 DFVLGNAFDFIQESKEEWDLIIADPPA-------------IAKTKKEKESILWAIWKLAY 306

Query: 350 QGISFVKPGGIVVFSNCS--LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
                +K GG +   +C+  +  ++    V+  L S+ +   ++ + S   + ID     
Sbjct: 307 YSFQKLKKGGSLFICSCTYQISSEEMIRQVR--LASTDVKRRII-IKSLNLQPIDHPYLP 363

Query: 408 S 408
           +
Sbjct: 364 T 364


>gi|223982933|ref|ZP_03633145.1| hypothetical protein HOLDEFILI_00421 [Holdemania filiformis DSM
           12042]
 gi|223965094|gb|EEF69394.1| hypothetical protein HOLDEFILI_00421 [Holdemania filiformis DSM
           12042]
          Length = 402

 Score = 39.9 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 18/137 (13%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA----EDII 294
            +   VLD  +  GG      +     V A+DVS+  L++ R N    HL          
Sbjct: 226 AHGKRVLDCFSHTGGFALNAALGNAQSVVAVDVSQTALDQGRANAVLNHLEDRIQFVKAD 285

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
             +  D C    +D +++D P              +T+    I ++    +++  Q +  
Sbjct: 286 VFEYLDRCAMGQYDIIVLDPPA-------------FTKSRKTIHQAYAGYKRINYQAMKL 332

Query: 355 VKPGGIVVFSNCSLDKQ 371
           ++ GG ++  +CS   +
Sbjct: 333 LQNGGYLITCSCSRFME 349


>gi|107022261|ref|YP_620588.1| succinylarginine dihydrolase [Burkholderia cenocepacia AU 1054]
 gi|116689206|ref|YP_834829.1| succinylarginine dihydrolase [Burkholderia cenocepacia HI2424]
 gi|118572843|sp|Q1BXP0|ASTB_BURCA RecName: Full=N-succinylarginine dihydrolase
 gi|166989408|sp|A0K609|ASTB_BURCH RecName: Full=N-succinylarginine dihydrolase
 gi|105892450|gb|ABF75615.1| succinylarginine dihydrolase [Burkholderia cenocepacia AU 1054]
 gi|116647295|gb|ABK07936.1| succinylarginine dihydrolase [Burkholderia cenocepacia HI2424]
          Length = 446

 Score = 39.9 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 20/106 (18%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-----------LSQRDQILVRAI 52
             NAR+ +   L  +      +  +L  +  +S               L+  ++  V + 
Sbjct: 331 RENARVAAY--LDQLAAGNGPIHDVLVFDLRESMKNGGGPACLRLRVVLNDAERAAVTSN 388

Query: 53  VN--VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL---RVSVAQI 93
           V    TL     +DA +D      L  +  +   LL   R ++ ++
Sbjct: 389 VWINDTL--FASLDAWIDKHYRDRLAPEDLADPALLDESRTALDEL 432


>gi|182418531|ref|ZP_02949819.1| methyltransferase [Clostridium butyricum 5521]
 gi|237668015|ref|ZP_04527999.1| PUA domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377623|gb|EDT75171.1| methyltransferase [Clostridium butyricum 5521]
 gi|237656363|gb|EEP53919.1| putative RNA methylase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 391

 Score = 39.9 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 22/143 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---- 298
            VLD     G       ++GAK    +DVS+  ++    N +  +L      E       
Sbjct: 219 DVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAVDCAIRNSELNNLQDIVKFECHNAFNV 278

Query: 299 --FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V++D P              +T+  + I ++    +++ L+GI  VK
Sbjct: 279 LGEWSRDGREFDVVILDPPA-------------FTKSKNTINQAIRGYKEINLRGIKMVK 325

Query: 357 PGGIVVFSNCSLDKQDSEEVVQK 379
            GG   F+ CS     SEE ++K
Sbjct: 326 KGGY--FATCSCSHYMSEEQLKK 346


>gi|329574370|gb|EGG55942.1| transcription antitermination protein NusB domain protein
           [Enterococcus faecalis TX1467]
          Length = 59

 Score = 39.9 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 81  SLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
               +LR+++ ++LY  DV +   ++ AVE +K+  ++R     VN +L  + +
Sbjct: 1   IDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRK-FVNGVLSNLMK 53


>gi|187731589|ref|YP_001881152.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella boydii CDC 3083-94]
 gi|194432949|ref|ZP_03065233.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Shigella dysenteriae 1012]
 gi|312967630|ref|ZP_07781845.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 2362-75]
 gi|187428581|gb|ACD07855.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Shigella boydii CDC 3083-94]
 gi|194418937|gb|EDX35022.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Shigella dysenteriae 1012]
 gi|312287827|gb|EFR15732.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 2362-75]
 gi|320174687|gb|EFW49820.1| Ribosomal protein L3 methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320183787|gb|EFW58621.1| Ribosomal protein L3 methyltransferase [Shigella flexneri CDC
           796-83]
 gi|323187945|gb|EFZ73240.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli RN587/1]
 gi|332090094|gb|EGI95193.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella dysenteriae 155-74]
 gi|332093472|gb|EGI98530.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella boydii 3594-74]
          Length = 310

 Score = 39.9 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|282879285|ref|ZP_06288030.1| transcription antitermination factor NusB [Prevotella buccalis ATCC
           35310]
 gi|281298567|gb|EFA90991.1| transcription antitermination factor NusB [Prevotella buccalis ATCC
           35310]
          Length = 333

 Score = 39.9 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +    +   +   +L             + D+     +   T+         +   
Sbjct: 181 VLKTIRRFDQANKADQEILPEYK--------DEEDRDFATKLFRATILNADTYQLYMSET 232

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    ++++++A++L + ++     +   V QAKR    +     +N +L
Sbjct: 233 SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTIYEYVNQAKRYSTTKS-GGYINGML 291

Query: 129 RRVSRE 134
             ++R 
Sbjct: 292 DSIARH 297


>gi|148270127|ref|YP_001244587.1| SAM-dependent methyltransferase-like protein [Thermotoga petrophila
           RKU-1]
 gi|281412531|ref|YP_003346610.1| methyltransferase small [Thermotoga naphthophila RKU-10]
 gi|147735671|gb|ABQ47011.1| SAM-dependent methyltransferase [Thermotoga petrophila RKU-1]
 gi|281373634|gb|ADA67196.1| methyltransferase small [Thermotoga naphthophila RKU-10]
          Length = 391

 Score = 39.9 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 61/173 (35%), Gaps = 19/173 (10%)

Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----AQLI 260
               + +    G   G +  Q  +A + + L      L                    + 
Sbjct: 181 MNGFKFLADTRGQKTGFFLDQRENAKMVMDLAEEKVCLDAFSYTGNFAVHLLKGGAKHVT 240

Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320
           +      AL+V++  L+    +  R  L   +  ++        + +D V++D P     
Sbjct: 241 LVDYSERALEVARETLKLNGFDSSRYDLLPGNAFDILKSFDREGQKYDLVVLDPPS---- 296

Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS-LDKQD 372
                    + + + ++  +    +++ L+ +  +K  G++V S+C+ +  ++
Sbjct: 297 ---------FAKSSSNLESAKRGYKEINLRAMRILKKPGVLVTSSCTQIVSEE 340


>gi|301647566|ref|ZP_07247363.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 146-1]
 gi|301074256|gb|EFK89062.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 146-1]
          Length = 310

 Score = 39.9 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|320178695|gb|EFW53658.1| Ribosomal protein L3 methyltransferase [Shigella boydii ATCC 9905]
          Length = 310

 Score = 39.9 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|226503425|ref|NP_001146234.1| hypothetical protein LOC100279806 [Zea mays]
 gi|219886309|gb|ACL53529.1| unknown [Zea mays]
          Length = 174

 Score = 39.9 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           + L+ A+ +   + +  ID ++        + R       +L +++A++         V+
Sbjct: 73  RELLVAVASGWDKHVVIIDKIIPQAWKDEPVARI--LELCILHIAMAEMASKGTPHKVVI 130

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
           + AV+ AKR   +    +++N  LR   ++ 
Sbjct: 131 NEAVDLAKRFC-DGGAPRVINGCLRTFVKDH 160


>gi|254172185|ref|ZP_04878861.1| methyltransferase small [Thermococcus sp. AM4]
 gi|214034081|gb|EEB74907.1| methyltransferase small [Thermococcus sp. AM4]
          Length = 396

 Score = 39.9 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 20/139 (14%)

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAED---- 292
                + VLD+    GG      V+GA    A+D S   +  ++ N     +  +     
Sbjct: 214 YVKPGMRVLDVFTYTGGFAMHAAVAGADEVVAVDKSPWAINMVKENAKLNGVEDKMKYIV 273

Query: 293 --IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                +        + FD V++D P              + +   D+ +       +   
Sbjct: 274 GSAFPVMEEMIKRGEEFDIVILDPPA-------------FVQHEKDLKRGLRAYFNVNYA 320

Query: 351 GISFVKPGGIVVFSNCSLD 369
           G+  VK GG++V  +CS  
Sbjct: 321 GLQLVKEGGVLVTCSCSQH 339


>gi|170681331|ref|YP_001744531.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli SMS-3-5]
 gi|218554885|ref|YP_002387798.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli IAI1]
 gi|218705860|ref|YP_002413379.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UMN026]
 gi|293405796|ref|ZP_06649788.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli FVEC1412]
 gi|298381479|ref|ZP_06991078.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300817463|ref|ZP_07097680.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 107-1]
 gi|300936910|ref|ZP_07151797.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 21-1]
 gi|301024163|ref|ZP_07187873.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 69-1]
 gi|331653775|ref|ZP_08354776.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli M718]
 gi|331663848|ref|ZP_08364758.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA143]
 gi|170519049|gb|ACB17227.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli SMS-3-5]
 gi|218361653|emb|CAQ99249.1| N5-glutamine methyltransferase [Escherichia coli IAI1]
 gi|218432957|emb|CAR13851.1| N5-glutamine methyltransferase [Escherichia coli UMN026]
 gi|284922318|emb|CBG35403.1| putative methylase [Escherichia coli 042]
 gi|291428004|gb|EFF01031.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli FVEC1412]
 gi|298278921|gb|EFI20435.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300396707|gb|EFJ80245.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 69-1]
 gi|300458021|gb|EFK21514.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 21-1]
 gi|300530089|gb|EFK51151.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 107-1]
 gi|331048624|gb|EGI20700.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli M718]
 gi|331059647|gb|EGI31624.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA143]
          Length = 310

 Score = 39.9 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|82544812|ref|YP_408758.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella boydii Sb227]
 gi|81246223|gb|ABB66931.1| putative adenine-specific methylase [Shigella boydii Sb227]
          Length = 421

 Score = 39.9 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|89109150|ref|AP_002930.1| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111419|ref|NP_416833.4| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157161819|ref|YP_001459137.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli HS]
 gi|170081946|ref|YP_001731266.1| ribosomal protein L3 N5-glutamine methyltransferase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|188493483|ref|ZP_03000753.1| methyltransferase, HemK family [Escherichia coli 53638]
 gi|238901505|ref|YP_002927301.1| N5-glutamine methyltransferase [Escherichia coli BW2952]
 gi|256021985|ref|ZP_05435850.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia sp. 4_1_40B]
 gi|300948520|ref|ZP_07162614.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 116-1]
 gi|300956401|ref|ZP_07168692.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 175-1]
 gi|301023578|ref|ZP_07187342.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 196-1]
 gi|307138995|ref|ZP_07498351.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli H736]
 gi|331642972|ref|ZP_08344107.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H736]
 gi|331658505|ref|ZP_08359449.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA206]
 gi|19859177|sp|P39199|YFCB_ECOLI RecName: Full=Uncharacterized adenine-specific methylase yfcB
 gi|85675359|dbj|BAA16188.2| N5-glutamine methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082085|gb|AAC75390.2| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157067499|gb|ABV06754.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli HS]
 gi|169889781|gb|ACB03488.1| ribosomal protein L3 N5-glutamine methyltransferase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|188488682|gb|EDU63785.1| methyltransferase, HemK family [Escherichia coli 53638]
 gi|238861843|gb|ACR63841.1| N5-glutamine methyltransferase [Escherichia coli BW2952]
 gi|260448576|gb|ACX38998.1| modification methylase, HemK family [Escherichia coli DH1]
 gi|299880813|gb|EFI89024.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 196-1]
 gi|300316750|gb|EFJ66534.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 175-1]
 gi|300451930|gb|EFK15550.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 116-1]
 gi|309702641|emb|CBJ01970.1| putative methylase [Escherichia coli ETEC H10407]
 gi|315136965|dbj|BAJ44124.1| adenine-specific DNA-methyltransferase [Escherichia coli DH1]
 gi|315298134|gb|EFU57398.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 16-3]
 gi|315615599|gb|EFU96231.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 3431]
 gi|331039770|gb|EGI11990.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H736]
 gi|331054170|gb|EGI26197.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA206]
          Length = 310

 Score = 39.9 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|302389423|ref|YP_003825244.1| SAM-dependent methyltransferase [Thermosediminibacter oceani DSM
           16646]
 gi|302200051|gb|ADL07621.1| SAM-dependent methyltransferase [Thermosediminibacter oceani DSM
           16646]
          Length = 390

 Score = 39.9 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 20/132 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----- 298
           VL+     G         GAK   A D SK  +E  R N     L      +        
Sbjct: 219 VLECFCYTGSFALSAARYGAKKVLAFDSSKDAVELARENAVLNGLNDICEFQEGNAFDVL 278

Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
              Y  +K FD V++D P              + ++   +  +    +++ L+ +  +KP
Sbjct: 279 RQFYDSRKKFDVVILDPPA-------------FAKNKKALESAIRGYKEINLRSLKILKP 325

Query: 358 GGIVVFSNCSLD 369
           GG ++ S+CS  
Sbjct: 326 GGFLITSSCSHH 337


>gi|225010642|ref|ZP_03701112.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C]
 gi|225005195|gb|EEG43147.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C]
          Length = 315

 Score = 39.9 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 45  DQILVRAI-VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYA 102
           D    + + V   L+         D        R       LL++S+ ++L+   +    
Sbjct: 210 DAEFAQNLLVKTALKESILAKETADKTPKWDKDRIADIDGILLKMSICELLFFPSIPVRV 269

Query: 103 VVDLAVEQAKRDKENRHF 120
            ++  +E AK     +  
Sbjct: 270 TINEYLEIAKEYSTPKSS 287


>gi|193069730|ref|ZP_03050681.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E110019]
 gi|192956932|gb|EDV87384.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E110019]
          Length = 310

 Score = 39.9 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            ++V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPESEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|304394128|ref|ZP_07376051.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ahrensia sp. R2A130]
 gi|303293568|gb|EFL87945.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ahrensia sp. R2A130]
          Length = 283

 Score = 39.9 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 6/129 (4%)

Query: 239 TLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
                   DL    G     L+     A   A D+S   L+    N  R  +        
Sbjct: 113 PPAKSRFSDLGTGSGIVAISLLHELSEATAVATDISAGALQTATANAARNGVGERLSTAQ 172

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI----VKSACFQRKLLLQGI 352
            ++    +  FD ++ + P  ++  +      +   D               R++L Q  
Sbjct: 173 GSWCEPLEGAFDFMVSNPPYIASDIVDGLDQSVLDHDPRRALDGGETGLEAYREILSQAG 232

Query: 353 SFVKPGGIV 361
           S ++PGG +
Sbjct: 233 SLLRPGGFL 241


>gi|88608227|ref|YP_506746.1| putative N utilization substance protein B [Neorickettsia sennetsu
           str. Miyayama]
 gi|88600396|gb|ABD45864.1| putative N utilization substance protein B [Neorickettsia sennetsu
           str. Miyayama]
          Length = 141

 Score = 39.9 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           ARL+S  +        +  + L+           + + D  L+ +I+++ L  +     +
Sbjct: 8   ARLLSIEVCYSSYFSDLPQSELISRALELQEMPYMKRYDLELLNSILDLCLANVEADTEL 67

Query: 67  LDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQ 110
           +   L     + R       LLRV+++++    V     V++  V  
Sbjct: 68  IGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYVSL 114


>gi|254787711|ref|YP_003075140.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Teredinibacter turnerae T7901]
 gi|237685052|gb|ACR12316.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Teredinibacter turnerae T7901]
          Length = 277

 Score = 39.9 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 9/157 (5%)

Query: 214 SLPGFAEG--VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG--KTAQLIVSGAKVTAL 269
           SLP F +   +    D    +   +   +    VLDL    G         +S A + A+
Sbjct: 80  SLPFFVDASTLIPRPDTELLVSCIVDLPIPKQRVLDLGTGTGAIALALASELSDAVIVAV 139

Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329
           D S   ++    N  RL     +I++ D +     + FD ++ + P              
Sbjct: 140 DKSPEAVKLALRNQARLGFTNVEILQSDWYSALGDQHFDVIVANPPYIDE-KDTHLGRGD 198

Query: 330 WTRDTDDIVKSACFQ----RKLLLQGISFVKPGGIVV 362
              +    + +A       R +++  +  +  GG ++
Sbjct: 199 VRFEPRSALVAADKGLADIRHIIVHAVEHLNDGGTLL 235


>gi|239625473|ref|ZP_04668504.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519703|gb|EEQ59569.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 410

 Score = 39.9 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 22/138 (15%)

Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLD------RLHLY 289
              +    VLD     G       ++G+K    +D S+  +++   N        R+H  
Sbjct: 228 CRHILPDKVLDCFTHTGSFALNAGLAGSKDVLGVDASQLAVDQASENAQLSGIGDRVHFE 287

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             D+ ++        + FD V++D P              +T+  + I  +    R++ L
Sbjct: 288 CADVFDLLPRLEQEGQKFDVVILDPPA-------------FTKSRNSIKNAVKGYREINL 334

Query: 350 QGISFVKPGGIVVFSNCS 367
           +G+  VK GG +  + CS
Sbjct: 335 RGMKLVKDGGYL--ATCS 350


>gi|77461575|ref|YP_351082.1| SAM-dependent methyltransferase [Pseudomonas fluorescens Pf0-1]
 gi|77385578|gb|ABA77091.1| SAM-dependent methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 398

 Score = 39.9 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 20/140 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGVQAAAFGASEVFCVDASGFALDGVERNAALNGFADKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKASEERFDVIVADPPA-------------FIKRKKDLKNGEGAYRRLNEQAMRLLN 329

Query: 357 PGGIVVFSNCSLDKQDSEEV 376
             GI+  ++CS+   + +  
Sbjct: 330 KDGILFSASCSMHLPEDDLQ 349


>gi|330903559|gb|EGH34131.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 108

 Score = 39.9 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
           + +   D+       R+L  Q +  +   GI+V ++CS+   + +  
Sbjct: 13  FIKRKKDMKNGEGAYRRLNEQAMRLLSKDGILVSASCSMHLPEDDLQ 59


>gi|300897013|ref|ZP_07115492.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 198-1]
 gi|300359194|gb|EFJ75064.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 198-1]
          Length = 311

 Score = 39.9 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|293415624|ref|ZP_06658267.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
 gi|291433272|gb|EFF06251.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
          Length = 421

 Score = 39.9 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|323936620|gb|EGB32907.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E1520]
 gi|323940973|gb|EGB37160.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E482]
          Length = 421

 Score = 39.9 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|212224934|ref|YP_002308170.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009891|gb|ACJ17273.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 396

 Score = 39.9 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 20/139 (14%)

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292
                + VLD+    GG      V+G  KV A+D S R +E  + N     +        
Sbjct: 214 YVKPGMKVLDVFTYTGGFAIHAAVAGAEKVVAVDKSPRAIEMAKENAKLNGVADRMEFIV 273

Query: 293 --IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
                +        + FD V++D P              + +   D+ +       +   
Sbjct: 274 GSAFPVMEEMIKRGEKFDIVILDPPA-------------FVQHEKDLKRGLRAYFNVNYA 320

Query: 351 GISFVKPGGIVVFSNCSLD 369
           G+  VK GGI+V ++CS  
Sbjct: 321 GLQLVKEGGILVTASCSQH 339


>gi|187933779|ref|YP_001884339.1| PUA domain containing protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187721932|gb|ACD23153.1| putative RNA methylase [Clostridium botulinum B str. Eklund 17B]
          Length = 396

 Score = 39.9 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 25/183 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--- 299
            VLD     G       ++GAK    +DVS+  ++    N +  +L      E       
Sbjct: 219 DVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAIDCANKNAELNNLQDTVKFECHNAFDV 278

Query: 300 ---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  +K FD V++D P              +T+  + I  +    +++ L+G+  VK
Sbjct: 279 LPAWSREEKKFDVVILDPPA-------------FTKSRNTINAAKRGYKEINLRGLKLVK 325

Query: 357 PGGIVVFSNCSLDKQDSEEVVQK-VLRSSPIPVELVPLNSAYWKSIDMA--MALSPEGWI 413
            GG  +   CS     +EE+++K +L +     +L+       +S D           ++
Sbjct: 326 HGGYFI--TCSCSHYMNEELLKKTILEACQDANKLIRQVEFRTQSCDHPILWNSDESYYL 383

Query: 414 RIT 416
           +  
Sbjct: 384 KFF 386


>gi|115640691|ref|XP_780899.2| PREDICTED: similar to GA19423-PA, partial [Strongylocentrotus
           purpuratus]
          Length = 267

 Score = 39.9 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 225 VQDASASIPVQLFGT---LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRC 281
            ++ S+     L G         +LD+    G  +  L+  G +V + D ++  L   R 
Sbjct: 20  WEERSSKYKNWLLGVLQSKKCHRILDVACGKGVDSLFLLEQGMEVVSCDDAEAMLFYARS 79

Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
              RL L    I   +          +       C  +  +             D+    
Sbjct: 80  QKTRLGLIDWVIKRANWLTLSEDLPDEEPFDAVLCLGSSILH----------LLDLPPEL 129

Query: 342 CFQRKLLLQGISFVKPGGIVV 362
              RK L     F+KPGG+++
Sbjct: 130 GLYRKCLTNFRKFLKPGGLLL 150


>gi|254301957|ref|ZP_04969397.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 406e]
 gi|157825026|gb|EDO88920.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 406e]
          Length = 102

 Score = 39.9 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
           ++  +  V R       L  +     +    +   +  ++ I    +R     D ++  +
Sbjct: 38  AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95

Query: 71  LISSLP 76
           +  + P
Sbjct: 96  VAKAPP 101


>gi|293410687|ref|ZP_06654263.1| hypothetical protein ECEG_01659 [Escherichia coli B354]
 gi|291471155|gb|EFF13639.1| hypothetical protein ECEG_01659 [Escherichia coli B354]
          Length = 314

 Score = 39.9 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 135 KQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 194

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 195 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGSDGLK---LTRRILGN 251

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 252 AADYLADDGVLI 263


>gi|255021278|ref|ZP_05293327.1| LSU m5C1962 methyltransferase RlmI [Acidithiobacillus caldus ATCC
           51756]
 gi|254969289|gb|EET26802.1| LSU m5C1962 methyltransferase RlmI [Acidithiobacillus caldus ATCC
           51756]
          Length = 432

 Score = 39.9 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 19/132 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----- 297
            VLDL +  GG    L  +G  +V A+D S   L  L  N  R  L      E +     
Sbjct: 225 RVLDLFSYLGGFALPLARAGAVEVLAVDRSASALALLEENARRNGLSQVHGHEGEALETL 284

Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  + FD +L+D P                +   D+        +L    +  ++P
Sbjct: 285 RQLRDRAESFDLILLDPPAL-------------IKSRKDVRDGTAAYARLNDLALRLLRP 331

Query: 358 GGIVVFSNCSLD 369
            G++  ++CS  
Sbjct: 332 DGLLFTASCSYH 343


>gi|87122427|ref|ZP_01078307.1| hypothetical protein MED121_19861 [Marinomonas sp. MED121]
 gi|86162220|gb|EAQ63505.1| hypothetical protein MED121_19861 [Marinomonas sp. MED121]
          Length = 401

 Score = 39.9 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 20/136 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFD- 300
            VLD+ +  GG   Q   +GA     +D S++ L  +  NL         ++++ DAF+ 
Sbjct: 224 RVLDVFSYVGGWGVQAASAGASDVTFIDASEKALGHVESNLTMNQYEGNANLMQGDAFES 283

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  K+ FD V++D P              +     D         +     +  V 
Sbjct: 284 MQSLIDDKQRFDVVVIDPPA-------------FITRRKDTKAGESAYYRANQLAMRLVA 330

Query: 357 PGGIVVFSNCSLDKQD 372
            GG +V ++CS+  ++
Sbjct: 331 KGGTLVTASCSMHLKE 346


>gi|260832412|ref|XP_002611151.1| hypothetical protein BRAFLDRAFT_88450 [Branchiostoma floridae]
 gi|229296522|gb|EEN67161.1| hypothetical protein BRAFLDRAFT_88450 [Branchiostoma floridae]
          Length = 1298

 Score = 39.9 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384
           H  +L  +    +   A   + LL Q   F K    +V+   S+ ++++EEV+ K L  +
Sbjct: 561 HCRLLQHKSYPPLQTPAAGFQVLLQQAFKFPKLEA-IVYLTRSIYEEENEEVILKTLEFA 619

Query: 385 PIPVELVPLNSAYWKSI--DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
               E   +    +  +          + ++R+ P                F   L R
Sbjct: 620 NSLPENKRIRFKSYHPMMSKKESDTQKDKFLRVEPSDKANGC---------FLAVLAR 668


>gi|323168496|gb|EFZ54176.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella sonnei 53G]
          Length = 310

 Score = 39.5 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|297521848|ref|ZP_06940234.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli OP50]
          Length = 287

 Score = 39.5 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|170719525|ref|YP_001747213.1| hypothetical protein PputW619_0338 [Pseudomonas putida W619]
 gi|169757528|gb|ACA70844.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 398

 Score = 39.5 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 20/138 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAE------DIIEM 296
            VLDL +  GG   Q    GA      D S   L+ +  N     +  +      D+ E 
Sbjct: 223 RVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEKLTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAAEERFDVIIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRMLT 329

Query: 357 PGGIVVFSNCSLDKQDSE 374
             GI+V ++CS+   + +
Sbjct: 330 KDGILVSASCSMHLPEDD 347


>gi|170019361|ref|YP_001724315.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli ATCC 8739]
 gi|169754289|gb|ACA76988.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli ATCC 8739]
          Length = 310

 Score = 39.5 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|152996265|ref|YP_001341100.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Marinomonas sp. MWYL1]
 gi|150837189|gb|ABR71165.1| modification methylase, HemK family [Marinomonas sp. MWYL1]
          Length = 304

 Score = 39.5 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 5/180 (2%)

Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247
           T   K   +    G      LP  +                S   P      LN L +  
Sbjct: 80  TRITKREPLPYLLGEAWFMGLPFKVTKDTLIPRSPIISLLESEFTPWLKNYPLNILDMCT 139

Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL 306
                G   A +        + D+S+  L+    N+ R  +      I  D F     K 
Sbjct: 140 GSGCLGIAAALVFEDAEVDIS-DISEAALDVANENIVRHQVEDRVHAIHSDMFKGLSGKR 198

Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDT---DDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +D ++ + P          P                   F  + L Q   +++  GI+V+
Sbjct: 199 YDLIICNPPYVDADDFHNAPAEFHNEPELALTSGEDGLNFTHEFLTQVAHYLQDDGILVY 258


>gi|320335602|ref|YP_004172313.1| SAM-dependent methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319756891|gb|ADV68648.1| SAM-dependent methyltransferase [Deinococcus maricopensis DSM
           21211]
          Length = 391

 Score = 39.5 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 18/129 (13%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY---- 301
           LD+ +  G     L    A V  +D S   L +   N+           E +AFD     
Sbjct: 222 LDVFSYHGSFGLHLAPGAAHVELIDASGAALARAEENMRLNGHTNVTYTEANAFDRLRDL 281

Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
               + FD + +D P              + +   D+  +    ++L L+ +  +  GG+
Sbjct: 282 ESAGQRFDTISLDPPA-------------FAKRAKDLPNAYRAYKELNLRCLKLLPVGGV 328

Query: 361 VVFSNCSLD 369
           +  ++CS  
Sbjct: 329 MATTSCSFH 337


>gi|18311530|ref|NP_563464.1| putative methyltransferase [Clostridium perfringens str. 13]
 gi|110802567|ref|YP_699802.1| putative methyltransferase [Clostridium perfringens SM101]
 gi|18146214|dbj|BAB82254.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110683068|gb|ABG86438.1| putative methyltransferase [Clostridium perfringens SM101]
          Length = 391

 Score = 39.5 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
               T    ++   + IV L    +  +++        +       ++ VLD     G  
Sbjct: 173 EPFDTDIQIVENGVKYIVDLENGQKTGFFLDQKENRAAMHRIC--KDMDVLDCFTHTGSF 230

Query: 256 TAQLIVSGAKVTA-LDVSKRRLEKLRCN------LDRLHLYAEDIIEMDAFDYCPKKLFD 308
                ++GAK    +DVS+  ++    N       DR+     +  ++        K FD
Sbjct: 231 ALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDRVKFEKHNAFDVLGDWSREGKQFD 290

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            V++D P              +T+  + + ++    +++ L+GI  VK GG   F+ CS 
Sbjct: 291 VVILDPPA-------------FTKSRNTVKQAIRGYKEINLRGIKMVKEGGY--FATCSC 335

Query: 369 DKQDSEEVVQK 379
                EE ++K
Sbjct: 336 SHYMDEEQLKK 346


>gi|89093754|ref|ZP_01166700.1| hypothetical protein MED92_04629 [Oceanospirillum sp. MED92]
 gi|89081884|gb|EAR61110.1| hypothetical protein MED92_04629 [Oceanospirillum sp. MED92]
          Length = 398

 Score = 39.5 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 26/194 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DAFDY 301
            VLDL +  GG  AQ + +G ++   +D S   LE               I    D F+ 
Sbjct: 223 RVLDLFSYVGGWGAQALAAGASQAICVDASHFALEVA--------AENARINNAEDRFEG 274

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
                FD             +       + +   D+        ++    +  +K  GI+
Sbjct: 275 FHGDAFDICKSLIADKEKFDVVVLDPPAFIQKKKDVRNGERAYSRMNNFAMRLLKKDGIL 334

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           V ++CS+            L+       LV +  +  + +D    +  +G  +     + 
Sbjct: 335 VSASCSMH-----------LQRE----RLVDIIRSNSRELDRNAQIFDQGH-QGADHPVH 378

Query: 422 KIDGVSSGMDGFFA 435
                +  +  FF 
Sbjct: 379 PAIPETDYLKSFFV 392


>gi|313651155|gb|EFS15554.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri 2a str. 2457T]
 gi|332755380|gb|EGJ85744.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-671]
 gi|332756543|gb|EGJ86894.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri 2747-71]
 gi|332766150|gb|EGJ96360.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri 2930-71]
 gi|333016296|gb|EGK35627.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-304]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|282858295|ref|ZP_06267480.1| transcription antitermination factor NusB [Prevotella bivia
           JCVIHMP010]
 gi|282588926|gb|EFB94046.1| transcription antitermination factor NusB [Prevotella bivia
           JCVIHMP010]
          Length = 337

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              D+     +   T+         +     +    R  Y    ++++++A+I+ + ++ 
Sbjct: 204 DIADRQFAIDLFRSTIMNAETYQQYMSEASHNWDFSRLAYMDVVIMQIAIAEIVNFPNIP 263

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
               ++  V  AK           +N +L  ++R 
Sbjct: 264 ISVSINEYVNLAK-LYSTPRSGGYINGMLDSIARH 297


>gi|320527464|ref|ZP_08028645.1| Met-10+ like-protein [Solobacterium moorei F0204]
 gi|320132177|gb|EFW24726.1| Met-10+ like-protein [Solobacterium moorei F0204]
          Length = 401

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYA----ED 292
               +  VLD  +  GG         AK   A+DVS   L++   N    HL        
Sbjct: 225 HIARDKRVLDCFSHTGGFALNAAYGNAKAVTAVDVSNVALQQGYQNAKLNHLEDKIQFVQ 284

Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
               D  +      FD +++D P              +T+    +  +    + + ++ +
Sbjct: 285 ADVFDYLEQLKGNEFDIIVLDPPA-------------FTKSRKTVNNAYYGYKNINMKAM 331

Query: 353 SFVKPGGIVVFSNCSLDKQ 371
           + ++ GG ++  +CS   +
Sbjct: 332 NVLRNGGYLITCSCSRFME 350


>gi|86160140|ref|YP_466925.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776651|gb|ABC83488.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 389

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 18/131 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301
             LD  +  GG   QL     +VTA+++       LR N         +++E +AFDY  
Sbjct: 219 RCLDCFSYAGGFALQLARRAERVTAVEMQPVPAGLLRENAALNRAENLEVVEENAFDYLR 278

Query: 302 ---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                +  FD V++D P              + ++ + +  +    +++ L+ +  + PG
Sbjct: 279 DRSEEEPAFDLVVLDPPA-------------FAKNKESLPAARRGYKEVNLRALQVLVPG 325

Query: 359 GIVVFSNCSLD 369
           G++V ++CS  
Sbjct: 326 GVLVTASCSYH 336


>gi|325496630|gb|EGC94489.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia fergusonii ECD227]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|323967772|gb|EGB63184.1| protein-(glutamine-N5) methyltransferase [Escherichia coli M863]
 gi|323977468|gb|EGB72554.1| protein-(glutamine-N5) methyltransferase [Escherichia coli TW10509]
 gi|327252601|gb|EGE64260.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli STEC_7v]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|225711596|gb|ACO11644.1| Glycine N-methyltransferase [Caligus rogercresseyi]
          Length = 287

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            +  +VLD+    G  +  L+ +G  V + D S   L++      R           D F
Sbjct: 59  KSCKNVLDVACGTGIDSVMLLENGFNVVSSDASDHMLKRAGDIRWRR-------RHEDNF 111

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ-RKLLLQGISFVKPG 358
                +  D + ++          +   ++   ++   +++   Q +K +      +KPG
Sbjct: 112 KDWDIQNVDWLNLEEKLVRPQGTEKFDALICMGNSFAHLENKKDQPKKAMENFYQMIKPG 171

Query: 359 GIVV 362
           GI++
Sbjct: 172 GILI 175


>gi|254444480|ref|ZP_05057956.1| Conserved hypothetical protein 95 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258788|gb|EDY83096.1| Conserved hypothetical protein 95 [Verrucomicrobiae bacterium
           DG1235]
          Length = 413

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 244 SVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---- 297
            VLD+C   GG     +VSG  ++VTA+D+ ++ + + + N +       +    D    
Sbjct: 241 DVLDVCCYTGGFALSAMVSGGASEVTAVDLDEKAIAQAKRNANLNGQARVNWTHCDAFSF 300

Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   K +D V +D P                   D   +       L     + VK
Sbjct: 301 MRQMQRNGKRWDLVNLDPP-------------KLIFSKDQEAEGMKKYEDLNQLASTLVK 347

Query: 357 PGGIV-VFSNCS 367
           PGGI   +S CS
Sbjct: 348 PGGIFATYS-CS 358


>gi|167755339|ref|ZP_02427466.1| hypothetical protein CLORAM_00853 [Clostridium ramosum DSM 1402]
 gi|167704278|gb|EDS18857.1| hypothetical protein CLORAM_00853 [Clostridium ramosum DSM 1402]
          Length = 400

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 18/133 (13%)

Query: 244 SVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMDA 298
            VLD  +  GG           +V A+DVS+  L++   N    +L            D 
Sbjct: 230 KVLDCFSHTGGFALNAAYGKAKEVVAVDVSQTALDQGYANAKLNNLQGCISFVKDDVFDY 289

Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
            D C K  FD +++D P              +T+    +  +    +K+ ++ +  +  G
Sbjct: 290 LDKCKKGQFDIIVLDPPA-------------FTKSRRTVDHAYNGYKKINMKAMKLLGRG 336

Query: 359 GIVVFSNCSLDKQ 371
           G ++  +CS   +
Sbjct: 337 GYLITCSCSRFME 349


>gi|191165479|ref|ZP_03027320.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli B7A]
 gi|194436322|ref|ZP_03068424.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli 101-1]
 gi|209919830|ref|YP_002293914.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli SE11]
 gi|218695929|ref|YP_002403596.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 55989]
 gi|253772746|ref|YP_003035577.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162339|ref|YP_003045447.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli B str. REL606]
 gi|256017512|ref|ZP_05431377.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sp. D9]
 gi|260856374|ref|YP_003230265.1| N5-glutamine methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260869052|ref|YP_003235454.1| N5-glutamine methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300822206|ref|ZP_07102348.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 119-7]
 gi|300903722|ref|ZP_07121637.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 84-1]
 gi|300922056|ref|ZP_07138198.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 182-1]
 gi|301304873|ref|ZP_07210977.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 124-1]
 gi|301328836|ref|ZP_07221878.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 78-1]
 gi|309793214|ref|ZP_07687642.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 145-7]
 gi|312973409|ref|ZP_07787581.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 1827-70]
 gi|331669030|ref|ZP_08369878.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA271]
 gi|331678277|ref|ZP_08378952.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H591]
 gi|190904402|gb|EDV64110.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli B7A]
 gi|194425050|gb|EDX41035.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli 101-1]
 gi|209913089|dbj|BAG78163.1| putative adenine-specific methylase [Escherichia coli SE11]
 gi|218352661|emb|CAU98442.1| N5-glutamine methyltransferase [Escherichia coli 55989]
 gi|242377963|emb|CAQ32732.1| N5-glutamine methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323790|gb|ACT28392.1| modification methylase, HemK family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974240|gb|ACT39911.1| N5-glutamine methyltransferase [Escherichia coli B str. REL606]
 gi|253978407|gb|ACT44077.1| N5-glutamine methyltransferase [Escherichia coli BL21(DE3)]
 gi|257755023|dbj|BAI26525.1| N5-glutamine methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257765408|dbj|BAI36903.1| N5-glutamine methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300404304|gb|EFJ87842.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 84-1]
 gi|300421556|gb|EFK04867.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 182-1]
 gi|300525336|gb|EFK46405.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 119-7]
 gi|300839802|gb|EFK67562.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 124-1]
 gi|300844785|gb|EFK72545.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 78-1]
 gi|308123500|gb|EFO60762.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 145-7]
 gi|310332004|gb|EFP99239.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 1827-70]
 gi|315255268|gb|EFU35236.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 85-1]
 gi|320199921|gb|EFW74510.1| Ribosomal protein L3 methyltransferase [Escherichia coli EC4100B]
 gi|323156482|gb|EFZ42637.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli EPECa14]
 gi|323176744|gb|EFZ62334.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 1180]
 gi|323961403|gb|EGB57014.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H489]
 gi|323970953|gb|EGB66204.1| protein-(glutamine-N5) methyltransferase [Escherichia coli TA007]
 gi|324020853|gb|EGB90072.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 117-3]
 gi|324117792|gb|EGC11691.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E1167]
 gi|331064224|gb|EGI36135.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA271]
 gi|331074737|gb|EGI46057.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H591]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|329943115|ref|ZP_08291889.1| transcription antitermination factor NusB [Chlamydophila psittaci
           Cal10]
 gi|332287697|ref|YP_004422598.1| transcription antitermination factor NusB [Chlamydophila psittaci
           6BC]
 gi|313848271|emb|CBY17272.1| putative transcription termination-related protein [Chlamydophila
           psittaci RD1]
 gi|325506888|gb|ADZ18526.1| transcription antitermination factor NusB [Chlamydophila psittaci
           6BC]
 gi|328814662|gb|EGF84652.1| transcription antitermination factor NusB [Chlamydophila psittaci
           Cal10]
 gi|328914950|gb|AEB55783.1| transcription antitermination factor NusB [Chlamydophila psittaci
           6BC]
          Length = 164

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSA-FRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R +   +L  +    +S   L+ L   ++A  +  +       + I    L     +D +
Sbjct: 26  REIVLQMLYALDMDPMSEESLVPLLMSETAVTQKHASSALNFSKEI----LAKSSELDLL 81

Query: 67  LDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
           +   + + S  +     + +LR+++ +  +   +    ++  A    K+ 
Sbjct: 82  IAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVKKF 131


>gi|78486190|ref|YP_392115.1| methyltransferase small [Thiomicrospira crunogena XCL-2]
 gi|78364476|gb|ABB42441.1| SAM-dependent methyltransferase [Thiomicrospira crunogena XCL-2]
          Length = 398

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRR 275
           G   G ++    +              +VLD+ +  GG   +  V+GAK     D S   
Sbjct: 199 GQKTGWFYDHRMARGRLQDFVKDK---TVLDVFSYLGGWGIEAAVAGAKEVTCVDASTFA 255

Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335
           L+ +  N +   +        +         FD +   A  +    +       + +   
Sbjct: 256 LDGVDRNAELNGV-------AEKVITIEGNAFDVLKALATEAHKYDVVIVDPPAFVKRKK 308

Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369
           D    A   R++    +  + P GI+V ++CS  
Sbjct: 309 DFKAGADGYRRINELAMRLLNPDGILVSASCSHH 342


>gi|193062223|ref|ZP_03043318.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E22]
 gi|194429280|ref|ZP_03061807.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli B171]
 gi|218548215|ref|YP_002382006.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia fergusonii ATCC 35469]
 gi|218559243|ref|YP_002392156.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli S88]
 gi|260844918|ref|YP_003222696.1| N5-glutamine methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|300918497|ref|ZP_07135090.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 115-1]
 gi|331684003|ref|ZP_08384599.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H299]
 gi|192931889|gb|EDV84488.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E22]
 gi|194412688|gb|EDX28983.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli B171]
 gi|218355756|emb|CAQ88369.1| N5-glutamine methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218366012|emb|CAR03756.1| N5-glutamine methyltransferase [Escherichia coli S88]
 gi|257760065|dbj|BAI31562.1| N5-glutamine methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|294493265|gb|ADE92021.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli IHE3034]
 gi|300414311|gb|EFJ97621.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 115-1]
 gi|307626133|gb|ADN70437.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UM146]
 gi|315288305|gb|EFU47704.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 110-3]
 gi|323162221|gb|EFZ48081.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli E128010]
 gi|323170399|gb|EFZ56052.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli LT-68]
 gi|323952123|gb|EGB47997.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H252]
 gi|323955852|gb|EGB51607.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H263]
 gi|324112867|gb|EGC06843.1| protein-(glutamine-N5) methyltransferase [Escherichia fergusonii
           B253]
 gi|331078955|gb|EGI50157.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H299]
 gi|332754980|gb|EGJ85345.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri 4343-70]
 gi|333001804|gb|EGK21370.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-218]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|333002700|gb|EGK22260.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-272]
 gi|333016583|gb|EGK35913.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-227]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|332278517|ref|ZP_08390930.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sp. D9]
 gi|332100869|gb|EGJ04215.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sp. D9]
          Length = 421

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|306814558|ref|ZP_07448720.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli NC101]
 gi|305851952|gb|EFM52404.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli NC101]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|222034086|emb|CAP76827.1| Uncharacterized adenine-specific methylase yfcB [Escherichia coli
           LF82]
 gi|312946949|gb|ADR27776.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|38704076|ref|NP_311241.2| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168748186|ref|ZP_02773208.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755089|ref|ZP_02780096.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168761225|ref|ZP_02786232.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168767963|ref|ZP_02792970.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168772937|ref|ZP_02797944.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168780193|ref|ZP_02805200.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168787244|ref|ZP_02812251.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|168798507|ref|ZP_02823514.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|195935710|ref|ZP_03081092.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208809728|ref|ZP_03252065.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814004|ref|ZP_03255333.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821799|ref|ZP_03262119.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209400438|ref|YP_002271740.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217327637|ref|ZP_03443720.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254794223|ref|YP_003079060.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261223215|ref|ZP_05937496.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259235|ref|ZP_05951768.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|187771349|gb|EDU35193.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188017230|gb|EDU55352.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189002135|gb|EDU71121.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357616|gb|EDU76035.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189363009|gb|EDU81428.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189368252|gb|EDU86668.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189372815|gb|EDU91231.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|189378909|gb|EDU97325.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|208729529|gb|EDZ79130.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735281|gb|EDZ83968.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741922|gb|EDZ89604.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209161838|gb|ACI39271.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217320004|gb|EEC28429.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254593623|gb|ACT72984.1| ribosomal protein L3 N5-glutamine methyltransferase [Escherichia
           coli O157:H7 str. TW14359]
 gi|320192045|gb|EFW66690.1| Ribosomal protein L3 methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320641158|gb|EFX10637.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. G5101]
 gi|320646374|gb|EFX15297.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H- str. 493-89]
 gi|320651644|gb|EFX20024.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H- str. H 2687]
 gi|320657395|gb|EFX25197.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662930|gb|EFX30254.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667674|gb|EFX34585.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326339683|gb|EGD63494.1| Ribosomal protein L3 methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|326344145|gb|EGD67906.1| Ribosomal protein L3 methyltransferase [Escherichia coli O157:H7
           str. 1044]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|291283571|ref|YP_003500389.1| putative adenine-specific methylase [Escherichia coli O55:H7 str.
           CB9615]
 gi|13362684|dbj|BAB36637.1| putative adenine-specific methylase [Escherichia coli O157:H7 str.
           Sakai]
 gi|209764668|gb|ACI80646.1| putative adenine-specific methylase [Escherichia coli]
 gi|209764670|gb|ACI80647.1| putative adenine-specific methylase [Escherichia coli]
 gi|209764672|gb|ACI80648.1| putative adenine-specific methylase [Escherichia coli]
 gi|209764674|gb|ACI80649.1| putative adenine-specific methylase [Escherichia coli]
 gi|209764676|gb|ACI80650.1| putative adenine-specific methylase [Escherichia coli]
 gi|290763445|gb|ADD57406.1| Putative adenine-specific methylase [Escherichia coli O55:H7 str.
           CB9615]
          Length = 421

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|157155888|ref|YP_001463675.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli E24377A]
 gi|218690490|ref|YP_002398702.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli ED1a]
 gi|218700806|ref|YP_002408435.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli IAI39]
 gi|293446667|ref|ZP_06663089.1| protein-(glutamine-N5) methyltransferase [Escherichia coli B088]
 gi|307311109|ref|ZP_07590753.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli W]
 gi|309784960|ref|ZP_07679593.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella dysenteriae 1617]
 gi|331673831|ref|ZP_08374594.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA280]
 gi|157077918|gb|ABV17626.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E24377A]
 gi|218370792|emb|CAR18605.1| N5-glutamine methyltransferase [Escherichia coli IAI39]
 gi|218428054|emb|CAR08973.2| N5-glutamine methyltransferase [Escherichia coli ED1a]
 gi|291323497|gb|EFE62925.1| protein-(glutamine-N5) methyltransferase [Escherichia coli B088]
 gi|306908615|gb|EFN39112.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli W]
 gi|308927330|gb|EFP72804.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella dysenteriae 1617]
 gi|315061623|gb|ADT75950.1| N5-glutamine methyltransferase [Escherichia coli W]
 gi|320196199|gb|EFW70823.1| Ribosomal protein L3 methyltransferase [Escherichia coli WV_060327]
 gi|323184350|gb|EFZ69726.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 1357]
 gi|323377796|gb|ADX50064.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli KO11]
 gi|331069104|gb|EGI40496.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA280]
 gi|333001475|gb|EGK21043.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri VA-6]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|324009251|gb|EGB78470.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 57-2]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|24113702|ref|NP_708212.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 2a str. 301]
 gi|30063756|ref|NP_837927.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 2a str. 2457T]
 gi|24052771|gb|AAN43919.1| putative adenine-specific methylase [Shigella flexneri 2a str. 301]
 gi|30042011|gb|AAP17737.1| putative adenine-specific methylase [Shigella flexneri 2a str.
           2457T]
 gi|281601772|gb|ADA74756.1| putative adenine-specific methylase [Shigella flexneri 2002017]
          Length = 421

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|62185353|ref|YP_220138.1| transcription antitermination protein NusB [Chlamydophila abortus
           S26/3]
 gi|62148420|emb|CAH64187.1| putative transcription termination-related protein [Chlamydophila
           abortus S26/3]
          Length = 164

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSA-FRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           R +   +L  +    +S   L+ L   ++A  +  +       + I    L     +D +
Sbjct: 26  REIVLQMLYALDMDPMSEESLVPLLMSETAVTQKHASSALNFSKEI----LAKSSELDLL 81

Query: 67  LDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
           +   + + S  +     + +LR+++ +  +   +    ++  A    K+ 
Sbjct: 82  IAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVKKF 131


>gi|110806296|ref|YP_689815.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 5 str. 8401]
 gi|110615844|gb|ABF04511.1| putative adenine-specific methylase [Shigella flexneri 5 str. 8401]
 gi|323944843|gb|EGB40909.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H120]
          Length = 421

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|74312848|ref|YP_311266.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sonnei Ss046]
 gi|73856325|gb|AAZ89032.1| putative adenine-specific methylase [Shigella sonnei Ss046]
          Length = 421

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|167762592|ref|ZP_02434719.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC
           43183]
 gi|167699698|gb|EDS16277.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC
           43183]
          Length = 308

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              DQ   R +    +        ++     +  L R  +    +++ ++A+IL + ++ 
Sbjct: 205 DDEDQEFARRLFRRAILNCDYYRHLISENTRNWDLDRVAFMDVVIMQCALAEILSFPNIP 264

Query: 100 DYAVVDLAVEQAKRDKENRHFA 121
               ++  V+ AK     +  +
Sbjct: 265 VSVSLNEYVDIAKVYSTAKSGS 286


>gi|15802877|ref|NP_288904.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 EDL933]
 gi|12516692|gb|AAG57459.1|AE005464_10 putative adenine-specific methylase [Escherichia coli O157:H7 str.
           EDL933]
          Length = 421

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|191169919|ref|ZP_03031473.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli F11]
 gi|300986871|ref|ZP_07177853.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 200-1]
 gi|331647987|ref|ZP_08349079.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli M605]
 gi|190909435|gb|EDV69020.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli F11]
 gi|281179417|dbj|BAI55747.1| putative adenine-specific methylase [Escherichia coli SE15]
 gi|300306360|gb|EFJ60880.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 200-1]
 gi|324015380|gb|EGB84599.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 60-1]
 gi|330912149|gb|EGH40659.1| ribosomal protein L3 methyltransferase [Escherichia coli AA86]
 gi|331043711|gb|EGI15849.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli M605]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|227887390|ref|ZP_04005195.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300983554|ref|ZP_07176648.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 45-1]
 gi|301049089|ref|ZP_07196073.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 185-1]
 gi|227835740|gb|EEJ46206.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300299136|gb|EFJ55521.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 185-1]
 gi|300408516|gb|EFJ92054.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 45-1]
 gi|307554392|gb|ADN47167.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli ABU 83972]
 gi|315292263|gb|EFU51615.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 153-1]
          Length = 310

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|168209788|ref|ZP_02635413.1| putative methyltransferase [Clostridium perfringens B str. ATCC
           3626]
 gi|168213474|ref|ZP_02639099.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
 gi|170712114|gb|EDT24296.1| putative methyltransferase [Clostridium perfringens B str. ATCC
           3626]
 gi|170715017|gb|EDT27199.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
          Length = 391

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
               T    ++   + IV L    +  +++        +        + VLD     G  
Sbjct: 173 EPFDTDIQIVENGVKYIVDLENGQKTGFFLDQKENRAAMHRIC--KGMDVLDCFTHTGSF 230

Query: 256 TAQLIVSGAKVTA-LDVSKRRLEKLRCN------LDRLHLYAEDIIEMDAFDYCPKKLFD 308
                ++GAK    +DVS+  ++    N       DR+     +  ++        K FD
Sbjct: 231 ALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDRVKFEKHNAFDVLGDWSREGKQFD 290

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            V++D P              +T+  + + ++    +++ L+GI  VK GG   F+ CS 
Sbjct: 291 VVILDPPA-------------FTKSRNTVKQAIRGYKEINLRGIKMVKEGGY--FATCSC 335

Query: 369 DKQDSEEVVQK 379
                EE ++K
Sbjct: 336 SHYMDEEQLKK 346


>gi|168205810|ref|ZP_02631815.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
 gi|169343327|ref|ZP_02864337.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
 gi|169298625|gb|EDS80706.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
 gi|170662746|gb|EDT15429.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
          Length = 391

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
               T    ++   + IV L    +  +++        +        + VLD     G  
Sbjct: 173 EPFDTDIQIVENGVKYIVDLENGQKTGFFLDQKENRAAMHRIC--KGMDVLDCFTHTGSF 230

Query: 256 TAQLIVSGAKVTA-LDVSKRRLEKLRCN------LDRLHLYAEDIIEMDAFDYCPKKLFD 308
                ++GAK    +DVS+  ++    N       DR+     +  ++        K FD
Sbjct: 231 ALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDRVKFEKHNAFDVLGDWSREGKQFD 290

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            V++D P              +T+  + + ++    +++ L+GI  VK GG   F+ CS 
Sbjct: 291 VVILDPPA-------------FTKSRNTVKQAIRGYKEINLRGIKMVKEGGY--FATCSC 335

Query: 369 DKQDSEEVVQK 379
                EE ++K
Sbjct: 336 SHYMDEEQLKK 346


>gi|53805109|ref|YP_113211.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Methylococcus capsulatus str. Bath]
 gi|53758870|gb|AAU93161.1| modification methylase, HemK family [Methylococcus capsulatus str.
           Bath]
          Length = 321

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 6/134 (4%)

Query: 235 QLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AE 291
                     VLDLC   G            A+V A+D+S   LE    N+    L    
Sbjct: 126 PWLVPDAVGDVLDLCTGSGCIAIACAEAFPQARVDAVDISGGALEVAGMNVRAHGLEETV 185

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW---TRDTDDIVKSACFQRKLL 348
            ++  D +       +D ++ + P  +    R  P           +         R++L
Sbjct: 186 RLVHSDLYQQLDGSRYDLIVSNPPYVNLQEWRALPPEYHAEPRLGLESGEDGLDCIRRIL 245

Query: 349 LQGISFVKPGGIVV 362
                 +KPGG++V
Sbjct: 246 AGAADRLKPGGVLV 259


>gi|182624317|ref|ZP_02952102.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
 gi|177910535|gb|EDT72908.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
          Length = 391

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
               T    ++   + IV L    +  +++        +        + VLD     G  
Sbjct: 173 EPFDTDIQIVENGVKYIVDLENGQKTGFFLDQKENRAAMHRIC--KGMDVLDCFTHTGSF 230

Query: 256 TAQLIVSGAKVTA-LDVSKRRLEKLRCN------LDRLHLYAEDIIEMDAFDYCPKKLFD 308
                ++GAK    +DVS+  ++    N       DR+     +  ++        K FD
Sbjct: 231 ALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDRVKFEKHNAFDVLGDWSREGKQFD 290

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            V++D P              +T+  + + ++    +++ L+GI  VK GG   F+ CS 
Sbjct: 291 VVILDPPA-------------FTKSRNTVKQAIRGYKEINLRGIKMVKEGGY--FATCSC 335

Query: 369 DKQDSEEVVQK 379
                EE ++K
Sbjct: 336 SHYMDEEQLKK 346


>gi|82777741|ref|YP_404089.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella dysenteriae Sd197]
 gi|81241889|gb|ABB62599.1| putative adenine-specific methylase [Shigella dysenteriae Sd197]
          Length = 421

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|302803795|ref|XP_002983650.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii]
 gi|300148487|gb|EFJ15146.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii]
          Length = 196

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 4   GMNARLVSSH--LLSCVM---RKRISLTCLLDLEYGDSAFRLL--SQRDQILVRA---IV 53
            M AR       +L       +    L    + E  +  F+    S+ D  L+ A   +V
Sbjct: 39  RMQARRERVDEKVLHQYDHDAKSGEPLYVSSESEAKELEFQQEQQSEIDAALLTAHPYVV 98

Query: 54  NV--TLRF------------LPRIDAVLDFVLISSLPRK---KYSLQQLLRVSVAQILYL 96
                LR+              + +AV+  +L S+   +   K     ++ +++A+I  L
Sbjct: 99  YNKFVLRYGKEKIIKATSEGREKQEAVVKELLPSTWKDEGNGKLLETTIMHMAIAEIEVL 158

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
             +   V++ AVE AKR   +    ++VN  L    R
Sbjct: 159 GTSPNIVINEAVELAKRFC-DGFAPRVVNGCLGNYFR 194


>gi|170288927|ref|YP_001739165.1| hypothetical protein TRQ2_1137 [Thermotoga sp. RQ2]
 gi|170176430|gb|ACB09482.1| conserved hypothetical protein [Thermotoga sp. RQ2]
          Length = 391

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 68/194 (35%), Gaps = 23/194 (11%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           + E W +     ++           + +    G   G +  Q  +A + + L      L 
Sbjct: 164 NREEWVYGKGPELIEFEMN----GFKFLADTRGQKTGFFLDQRENARMVMDLAEGKVCLD 219

Query: 245 VLDLCAAPGGKT-----AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           V                  + +      AL+V++  L+    +  R  L   +  ++   
Sbjct: 220 VFSYTGNFAVHLLKGGAKHVTLVDYSERALEVAREILKLNGFDSSRYDLLPGNAFDILKS 279

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                + +D V++D P              + + + ++  +    +++ L+ +  +K  G
Sbjct: 280 FDREGRKYDLVVLDPPS-------------FAKSSSNLESARRGYKEINLRAMRILKKPG 326

Query: 360 IVVFSNCS-LDKQD 372
           ++V S+C+ +  ++
Sbjct: 327 VLVTSSCTQIVSEE 340


>gi|15644445|ref|NP_229497.1| hypothetical protein TM1697 [Thermotoga maritima MSB8]
 gi|4982274|gb|AAD36764.1|AE001810_3 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 391

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 68/194 (35%), Gaps = 23/194 (11%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           + E W +     ++           + +    G   G +  Q  +A + + L      L 
Sbjct: 164 NREEWVYGKGPELIEFEMN----GFKFLADTRGQKTGFFLDQRENARMVMDLAEGKVCLD 219

Query: 245 VLDLCAAPGGKT-----AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
           V                  + +      AL+V++  L+    +  R  L   +  ++   
Sbjct: 220 VFSYTGNFAVHLLKGGAKHVTLVDYSERALEVAREILKLNGFDSSRYDLLPGNAFDILKS 279

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
                + +D V++D P              + + + ++  +    +++ L+ +  +K  G
Sbjct: 280 FDREGRKYDLVVLDPPS-------------FAKSSSNLESARRGYKEINLRAMRILKKPG 326

Query: 360 IVVFSNCS-LDKQD 372
           ++V S+C+ +  ++
Sbjct: 327 VLVTSSCTQIVSEE 340


>gi|325479469|gb|EGC82565.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 264

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 14/199 (7%)

Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229
           +     +   L    D     + L   +       L    +    +P F   +       
Sbjct: 35  EELDKDISTRLYEIIDKFEKGYPLQYAIGEWEFYGLNFKVDKRALIPRFETEII------ 88

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287
             +   +        +LD+    G     L      +++ A D+S   L+  R N  R+ 
Sbjct: 89  --VDYLIKSDWKKDKILDIGTGSGAIALSLGKKLGKSEILASDISDDALDLARENKKRIG 146

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAP---CSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344
           ++    I+ D F+      FD ++ + P    S    + +                  F 
Sbjct: 147 VHNVSFIKSDIFEEISG-KFDIIISNPPYINKSDYENLDKRLYHEPKSALFAEENGLYFY 205

Query: 345 RKLLLQGISFVKPGGIVVF 363
           +K++ +  +++  GG +VF
Sbjct: 206 KKIVSEANNYLNCGGKLVF 224


>gi|269302790|gb|ACZ32890.1| transcription antitermination factor NusB [Chlamydophila pneumoniae
           LPCoLN]
          Length = 160

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI--VNVTLRFLPRIDA 65
           R +   +L  +     +   L+ L    +A        + ++ A+      L     +D 
Sbjct: 26  REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQ-----KHVLVALNQTKSILEKSQELDL 80

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           ++   L   S        + +LR+++ +  Y   +    ++  A+   K+   +    
Sbjct: 81  IIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACP 138


>gi|262340975|ref|YP_003283830.1| transcription antitermination factor NusB [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272312|gb|ACY40220.1| transcription antitermination factor NusB [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 300

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQ-ILYLDVADYAV 103
           +  V  +   T+      +++++ +  +  + R       +L++++ + + + ++   A 
Sbjct: 196 KKFVIDLYRNTIFHKEEFNSLINDISNNWNIKRIAILDLIILQMAICEFLYFPNIPPKAT 255

Query: 104 VDLAVEQAKRDKENRH 119
           ++  +E  K     + 
Sbjct: 256 MNEYIEITKIFCMEKS 271


>gi|16752038|ref|NP_445404.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae AR39]
 gi|7189778|gb|AAF38655.1| N utilization substance protein B, putative [Chlamydophila
           pneumoniae AR39]
          Length = 163

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI--VNVTLRFLPRIDA 65
           R +   +L  +     +   L+ L    +A        + ++ A+      L     +D 
Sbjct: 29  REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQ-----KHVLVALNQTKSILEKSQELDL 83

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           ++   L   S        + +LR+++ +  Y   +    ++  A+   K+   +    
Sbjct: 84  IIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACP 141


>gi|15618897|ref|NP_225183.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae CWL029]
 gi|15836520|ref|NP_301044.1| transcription antitermination protein NusB [Chlamydophila
           pneumoniae J138]
 gi|7387979|sp|Q9Z6S0|NUSB_CHLPN RecName: Full=N utilization substance protein B homolog;
           Short=Protein nusB
 gi|4377317|gb|AAD19126.1| CT832 hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|8979362|dbj|BAA99196.1| CT832 hypothetical protein [Chlamydophila pneumoniae J138]
          Length = 160

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI--VNVTLRFLPRIDA 65
           R +   +L  +     +   L+ L    +A        + ++ A+      L     +D 
Sbjct: 26  REIILQMLYALDMAPSAEDSLVPLLMSQTAVSQ-----KHVLVALNQTKSILEKSQELDL 80

Query: 66  VLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121
           ++   L   S        + +LR+++ +  Y   +    ++  A+   K+   +    
Sbjct: 81  IIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACP 138


>gi|307566362|ref|ZP_07628801.1| transcription antitermination factor NusB [Prevotella amnii CRIS
           21A-A]
 gi|307344939|gb|EFN90337.1| transcription antitermination factor NusB [Prevotella amnii CRIS
           21A-A]
          Length = 313

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              D+     +   T+         +     +    R  Y    ++++++A+++ + ++ 
Sbjct: 179 DDEDRKFAIDLFRATIINAEVYQGYMSQASRNWDFSRLAYMDVVIMQIAIAEMVNFPNIP 238

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134
               ++  V  AK           +N +L  ++R 
Sbjct: 239 INVSINEYVNLAK-LYSTPRSGGYINGMLDSIARH 272


>gi|222081320|ref|YP_002540683.1| protoporphyrinogen oxidase (methyltransferase) protein
           [Agrobacterium radiobacter K84]
 gi|221725999|gb|ACM29088.1| protoporphyrinogen oxidase (methyltransferase) protein
           [Agrobacterium radiobacter K84]
          Length = 247

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 11/130 (8%)

Query: 245 VLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDY 301
           V+D+C   G     + ++   A+V + D++   ++    N+ R  L     +++ D F+ 
Sbjct: 77  VVDMCCGCGNLGIAIAMNIADAQVWSCDLTPETVDVAWRNVIRFGLQDRMSVVQGDMFEN 136

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS----ACFQRKLLLQGIS 353
                 +   D ++ + P  STG +      L   +  +           Q++L+ +   
Sbjct: 137 IRSIGLEGRVDLIVCNPPYISTGRLEADRAHLLENEPREAFDGGPYGISIQQRLIREAFE 196

Query: 354 FVKPGGIVVF 363
           F+KPGG + F
Sbjct: 197 FLKPGGWLAF 206


>gi|332829206|gb|EGK01870.1| hypothetical protein HMPREF9455_02018 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 308

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/113 (7%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +      + +   LL +             D+     ++  +L        ++D  
Sbjct: 182 VLKTIKRFEENKGAAQELLPMFK--------DDSDREFAVKLLRESLWNGKEYRELIDKY 233

Query: 71  LISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             +    R       ++++++ +I+ +  +     ++  ++ AK     +  +
Sbjct: 234 TKNWESERIALMDMVIMQIAIGEIVSFPSIPISVTLNEYIDIAKSYSTAKSAS 286


>gi|284031796|ref|YP_003381727.1| type 11 methyltransferase [Kribbella flavida DSM 17836]
 gi|283811089|gb|ADB32928.1| Methyltransferase type 11 [Kribbella flavida DSM 17836]
          Length = 222

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 24/118 (20%)

Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL-DRLHLYAEDIIEMDAFDYCPK 304
           LD     G +   L   G +VTA+D+S   L +       R        +E D   + P+
Sbjct: 45  LDAGCGTGAEAIWLAEHGWQVTAVDISAEALARAEERSAPRGMSQQVRWVEADLSVWQPE 104

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
             +D V                              A  Q K   +   +V PGG ++
Sbjct: 105 TQYDLVTT-----------------------HYAHPAIPQLKFYDRIARWVAPGGTLL 139


>gi|126465331|ref|YP_001040440.1| tRNA/rRNA cytosine-C5-methylase [Staphylothermus marinus F1]
 gi|126014154|gb|ABN69532.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family
          [Staphylothermus marinus F1]
          Length = 240

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 8  RLVSSHLLSCV-MRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65
          R +   ++  V +      +   +             Q D+  V  IV    R+   +D 
Sbjct: 5  RRIIYAIIESVGLGFNVKPVQEAIRRVISKYRISD-PQVDRK-VSGIVYSIYRYQGLLDK 62

Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVA 91
          ++  +   +     Y +   L V+  
Sbjct: 63 IVTDITGFNPSDLPYYVHAALLVAAY 88


>gi|26248718|ref|NP_754758.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli CFT073]
 gi|26109124|gb|AAN81326.1|AE016764_8 Hypothetical adenine-specific methylase yfcB [Escherichia coli
           CFT073]
          Length = 421

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|328951283|ref|YP_004368618.1| ATPase associated with various cellular activities AAA_3
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451607|gb|AEB12508.1| ATPase associated with various cellular activities AAA_3
           [Marinithermus hydrothermalis DSM 14884]
          Length = 343

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL---VRAIVNVTLR 58
            +   AR V    L   +    S    L+L  G  A  ++  R+  L   V  ++   LR
Sbjct: 237 ATRDPAR-VGLEALRRYITFGASPRAALNLVLGAKALAVIRGREFALPVDVHDLMYDVLR 295

Query: 59  FLPRI-----------DAVLDFVLIS 73
               +           D ++  V+  
Sbjct: 296 HRLVLSYEALAEGIAPDEIIRQVVER 321


>gi|226311627|ref|YP_002771521.1| hypothetical protein BBR47_20400 [Brevibacillus brevis NBRC 100599]
 gi|226094575|dbj|BAH43017.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 431

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 20/132 (15%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLH-LYAEDIIEMDAFDY- 301
           VL+     G  T      GAK   ALD+S+  +E  + N+     L+  D +  +AFDY 
Sbjct: 257 VLECFTHTGSFTLNACKHGAKKVTALDISEHAIETAKRNITLNGFLHRVDFVVANAFDYL 316

Query: 302 ----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
                  K +D V++D P              + +    +  +    + + L G+  V+ 
Sbjct: 317 RENVEAGKSWDVVILDPPA-------------FAKSRGAVKGACRGYKDINLNGMKLVRQ 363

Query: 358 GGIVVFSNCSLD 369
           GG +V ++CS  
Sbjct: 364 GGFLVTASCSYH 375


>gi|26344922|dbj|BAC36110.1| unnamed protein product [Mus musculus]
          Length = 366

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 15/43 (34%)

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI-------QPK 445
           E  +RI P              GFF   L +         QPK
Sbjct: 16  ERCLRILPHHQ--------NTGGFFVAVLVKKAPMPWNKRQPK 50


>gi|114046986|ref|YP_737536.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella sp. MR-7]
 gi|113888428|gb|ABI42479.1| modification methylase, HemK family [Shewanella sp. MR-7]
          Length = 314

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
            +  A+             +LDLC   G            A+V ALD+S+  L+  + N+
Sbjct: 118 AEMIANRFSPWLYGKPVNRILDLCTGSGCIAIACAYEFDEAEVDALDISEDALDVAQINV 177

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD----DIV 338
           + L +      ++ D F   P+     ++V  P              +  +         
Sbjct: 178 ETLGVMDRVFPMQSDLFSAIPEGPQYDLIVSNPPYVDEEDIGDMPDEYHHEPAIGLASGR 237

Query: 339 KSACFQRKLLLQGISFVKPGGIVV 362
                 +++L     ++ P GI+V
Sbjct: 238 DGLDLTKRILANAAQYLTPTGILV 261


>gi|223943803|gb|ACN25985.1| unknown [Zea mays]
          Length = 284

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           + L+ A+ +   + +  ID ++        + R       +L +++A++         V+
Sbjct: 183 RELLVAVASGWDKHVVIIDKIIPQAWKDEPVARI--LELCILHIAMAEMASKGTPHKVVI 240

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
           + AV+ AKR   +    +++N  LR   ++ 
Sbjct: 241 NEAVDLAKRFC-DGGAPRVINGCLRTFVKDH 270


>gi|292619783|ref|XP_697381.4| PREDICTED: hypothetical protein LOC568930 [Danio rerio]
          Length = 1115

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 50/253 (19%), Gaps = 11/253 (4%)

Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164
           +      +     R     VN        +    L      + +PEW         G   
Sbjct: 318 NTLDNYWRSTSIYRSVYNDVNGYDNNHEWDGWYRLLMNGLSAQMPEWCAT--YMECGGVT 375

Query: 165 VLAISDACISPLYIDL------TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG- 217
            L +  +        +          +   +      V    G   + +     +S+P  
Sbjct: 376 ALWLHGSHPQLEDGVVTREVYGCRNNECNRYRSNPIQVKACAGEYYVYKFTRPTLSIPAP 435

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277
               V      S                 D       +      +G      +    ++ 
Sbjct: 436 RYCAVLSFTTPSVDPCYNYTSLDEPWKSTDNSYYNNYRCDYTEWNGWYRLFYNNQSTQMP 495

Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337
           +   N      Y    +           +     V A  S+         +       D 
Sbjct: 496 ESCVNQFMCGTYNPLWLNESHPQLEDGVVLRH--VCASGSNGCCTYTSHPIRVKACPGDY 553

Query: 338 VKSACFQRKLLLQ 350
                 Q ++   
Sbjct: 554 YVYEFKQPRICSA 566


>gi|110642534|ref|YP_670264.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 536]
 gi|110344126|gb|ABG70363.1| hypothetical adenine-specific methylase YfcB [Escherichia coli 536]
          Length = 421

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|91211627|ref|YP_541613.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UTI89]
 gi|117624520|ref|YP_853433.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli APEC O1]
 gi|237704811|ref|ZP_04535292.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia sp. 3_2_53FAA]
 gi|91073201|gb|ABE08082.1| protein-(glutamine-N5) methyltransferase [Escherichia coli UTI89]
 gi|115513644|gb|ABJ01719.1| protein-(glutamine-N5) methyltransferase [Escherichia coli APEC O1]
 gi|226901177|gb|EEH87436.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia sp. 3_2_53FAA]
          Length = 421

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 242 KQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 301

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 302 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 358

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 359 AADYLADDGVLI 370


>gi|302817774|ref|XP_002990562.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii]
 gi|300141730|gb|EFJ08439.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii]
          Length = 196

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 4   GMNARLVSSH--LLSCVM---RKRISLTCLLDLEYGDSAFRLL--SQRDQILVRA---IV 53
            M AR       +L       +    L    + E  +  F+    S+ D  L+ A   +V
Sbjct: 39  RMQARRERVDEKVLDQYDHDAKSGEPLYVSCESEAKELEFQQEQQSEIDAALLTAHPCVV 98

Query: 54  NV--TLRF------------LPRIDAVLDFVLISSLPRK---KYSLQQLLRVSVAQILYL 96
                LR+              + +AV+  +L S+   +   K     ++ +++A+I  L
Sbjct: 99  YNKFVLRYGKEKIIKATSEGREKQEAVVKELLPSTWKDESNGKLLETTIMHMAIAEIEVL 158

Query: 97  DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
             +   V++ AVE AKR   +    ++VN  L    R
Sbjct: 159 GTSPNIVINEAVELAKRFC-DGFAPRVVNGCLGNYFR 194


>gi|330944165|gb|EGH46282.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 344

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 20/133 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDII------EM 296
            VLDL +  GG   Q    GA      D S   L+ +  N        +         E 
Sbjct: 223 RVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LKELKAAEERFDVIVADPPA-------------FIKRKKDMKNGEGAYRRLNEQAMRLLS 329

Query: 357 PGGIVVFSNCSLD 369
             GI+V ++CS+ 
Sbjct: 330 KDGILVSASCSMH 342


>gi|269986472|gb|EEZ92757.1| methylase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 196

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 6/126 (4%)

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
           +  VLD+CA  G            V  +D++ + ++ +  N  +  +   + I  D F  
Sbjct: 28  HGDVLDMCAGSGIIGLNAARLANTVPFVDINPKAIKAIEYNARKNGISNFECINSDLFYA 87

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI- 360
             K+ FD +  + P       ++                     K++      +K  G  
Sbjct: 88  LDKRKFDIIYANPP----YLPKKMEKGWIGYALSGGETGNEITLKIISSLTKHLKRNGEA 143

Query: 361 -VVFSN 365
            ++ S 
Sbjct: 144 FIILST 149


>gi|24374600|ref|NP_718643.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella oneidensis MR-1]
 gi|24349214|gb|AAN56087.1|AE015744_8 hemK family protein [Shewanella oneidensis MR-1]
          Length = 305

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
            +  A+             +LDLC   G            A+V ALD+S+  L+  + N+
Sbjct: 109 AEMIANRFGPWLYGKPVNRILDLCTGSGCIAIACAYEFDEAEVDALDISEDALDVAQVNV 168

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD----DIV 338
           + L +      ++ D F   P+     ++V  P              +  +         
Sbjct: 169 ETLGVMDRVFPMQSDLFSAIPEGPQYDLIVSNPPYVDEEDIGDMPDEYHHEPAIGLASGR 228

Query: 339 KSACFQRKLLLQGISFVKPGGIVV 362
                 +++L     ++ P GI+V
Sbjct: 229 DGLDLTKRILANAAQYLTPTGILV 252


>gi|192359316|ref|YP_001981173.1| methyltransferase, HemK family [Cellvibrio japonicus Ueda107]
 gi|190685481|gb|ACE83159.1| methyltransferase, HemK family [Cellvibrio japonicus Ueda107]
          Length = 265

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 53/212 (25%), Gaps = 5/212 (2%)

Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215
           L +   K R    +          L               +    G      LP  + + 
Sbjct: 13  LCHLLQKNRTWLYTWPDHLLADESLRQFETCLARRETGEPIAHIIGEREFWSLPLLVNNS 72

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG--KTAQLIVSGAKVTALDVSK 273
                    V                    LDL    G             +V A+D S 
Sbjct: 73  TLIPRPDTEVVVEQVLASFAEDAPTQVRRCLDLGTGTGAIALALANEKKHWQVLAVDRSA 132

Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP---CSSTGTIRRHPDVLW 330
             +   R N+ RL L    ++  D F   P + FD ++ + P          +       
Sbjct: 133 DAVALARTNVARLRLPNVQVLCSDWFSAIPAQTFDVIVSNPPYIDPQDPHLEQGDVRFEP 192

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                           +L Q  +++  GG ++
Sbjct: 193 RSALVAGNAGLADIEAILEQAPAYLAVGGWLL 224


>gi|117919916|ref|YP_869108.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella sp. ANA-3]
 gi|117612248|gb|ABK47702.1| modification methylase, HemK family [Shewanella sp. ANA-3]
          Length = 314

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
            +  A+             +LDLC   G            A+V ALD+S+  L+  + N+
Sbjct: 118 AEMIANRFGPWLYGKPVNRILDLCTGSGCIAIACAYEFDEAEVDALDISEDALDVAQINV 177

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD----DIV 338
           + L +      ++ D F   P+     ++V  P              +  +         
Sbjct: 178 ETLGVMDRVFPMQSDLFSAIPEGPQYDLIVSNPPYVDEEDIGDMPDEYHHEPAIGLASGR 237

Query: 339 KSACFQRKLLLQGISFVKPGGIVV 362
                 +++L     ++ P GI+V
Sbjct: 238 DGLDLTKRILANAAQYLTPTGILV 261


>gi|206896332|ref|YP_002247123.1| hypothetical protein COPRO5265_0776 [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738949|gb|ACI18027.1| hypothetical protein COPRO5265_0776 [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 148

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 14  LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI- 72
           LL  ++   + LT   DL          S R +  ++ ++N  L     ID  +D  L  
Sbjct: 16  LLQELLGYELGLTSQEDLWPRLKVALPKSDRVKRHIKRLLNAYLENREEIDIWIDHSLKS 75

Query: 73  SSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130
            S        + ++R++V +  +         +V   V+ A+R   +  FAK +++I+  
Sbjct: 76  KSFAAYSDLEKMIMRLAVVETRFFGDEKMMPIIVSTWVDIARRYV-DESFAKAIHAIMGT 134

Query: 131 VSREKI 136
              E+ 
Sbjct: 135 CYEEQN 140


>gi|312891647|ref|ZP_07751157.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603]
 gi|311295831|gb|EFQ72990.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603]
          Length = 315

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/113 (10%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               L     K  S       +  +     +   D+  + ++   T+R+       +   
Sbjct: 177 VLQALIAKTFKNFSFEEAEKNKLAEVVVNWVD--DREYIVSLFQHTIRYDEMFQEWITAK 234

Query: 71  LISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121
             +    R       L+++++A+ +Y   +     ++  +E +K     +  +
Sbjct: 235 TQNWEPERIAMMDTLLMKMAIAEFVYFPSIPVKVTINEYLEISKEFSTPKSNS 287


>gi|223986295|ref|ZP_03636307.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
           12042]
 gi|223961734|gb|EEF66234.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
           12042]
          Length = 115

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 15  LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-S 73
           L         +  +++    +     L        R ++  TL    R    ++  L   
Sbjct: 4   LYQHRLLNKPMDEIIEEVM-EMKTGELDD----FSRILILDTLDNENRYIQYINETLKDW 58

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
           S  R     Q +L ++ +++ +   +   ++D AV  AK   ++  +
Sbjct: 59  SFERLGVLEQAILLMACSELDHQTASAAIIIDEAVRLAKDYCDDEAY 105


>gi|113969757|ref|YP_733550.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella sp. MR-4]
 gi|113884441|gb|ABI38493.1| modification methylase, HemK family [Shewanella sp. MR-4]
          Length = 314

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
            +  A+             +LDLC   G            A+V ALD+S+  L+  + N+
Sbjct: 118 AEMIANRFAPWLYGKPVNRILDLCTGSGCIAIACAYEFDEAEVDALDISEDALDVAQINV 177

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD----DIV 338
           + L +      ++ D F   P+     ++V  P              +  +         
Sbjct: 178 ETLGVMDRVFPMQSDLFSAIPEGPQYDLIVSNPPYVDEEDIGDMPDEYHHEPAIGLASGR 237

Query: 339 KSACFQRKLLLQGISFVKPGGIVV 362
                 +++L     ++ P GI+V
Sbjct: 238 DGLDLTKRILANAAQYLTPTGILV 261


>gi|115631588|ref|XP_788033.2| PREDICTED: similar to Nsun7 protein [Strongylocentrotus purpuratus]
 gi|115931850|ref|XP_001181713.1| PREDICTED: similar to Nsun7 protein [Strongylocentrotus purpuratus]
          Length = 554

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 15/118 (12%)

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
           +D D I + A     LL   + F +    VV++  S+ K+++E VV K    +   +   
Sbjct: 433 QDLDRIDELALEHMDLLKHALKFYRVQA-VVYATTSIMKEENENVVAKSAEFTNGKMSTK 491

Query: 392 PLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444
                    +        E      ++R+ P  +         M G F   L R ++P
Sbjct: 492 NNPYRPVPPVLPLTPHDFEVQNSGKFLRMEPSNV---------MGGCFVAILSREVRP 540


>gi|323344945|ref|ZP_08085169.1| NusB family protein [Prevotella oralis ATCC 33269]
 gi|323094215|gb|EFZ36792.1| NusB family protein [Prevotella oralis ATCC 33269]
          Length = 329

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +     K  S   LL        ++ +  +D      +   T+    +    +   
Sbjct: 181 VLKTIKRFDPKNKSKQELLPE------YKDMEDKD--FACKLFRATILNADQYQHYMSET 232

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    ++++++A++L + ++     ++  V+ AK     +     +N +L
Sbjct: 233 SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTPKS-GGYINGML 291

Query: 129 RRVSREKIELLQRI 142
             ++R  I+  + +
Sbjct: 292 DSIARYLIDSGKMM 305


>gi|332344114|gb|AEE57448.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific PrmB [Escherichia coli UMNK88]
          Length = 310

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 240 LNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEM 296
                +LD+C   G            A+V A+D+S   L     N++   L +    I  
Sbjct: 131 RQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRS 190

Query: 297 DAFDYCPKKLFDAVLVDAP------CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350
           D F   PK  +D ++ + P       S      RH   L      D +K     R++L  
Sbjct: 191 DLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK---LTRRILGN 247

Query: 351 GISFVKPGGIVV 362
              ++   G+++
Sbjct: 248 AADYLADDGVLI 259


>gi|332654575|ref|ZP_08420318.1| putative methyltransferase [Ruminococcaceae bacterium D16]
 gi|332516539|gb|EGJ46145.1| putative methyltransferase [Ruminococcaceae bacterium D16]
          Length = 409

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 19/135 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDY 301
            VLD     G       + GA+   A+DVS+  ++  R N  R  L         D FD 
Sbjct: 238 RVLDCFTHTGSFALNAALGGAEHVTAVDVSQAAVDLARDNAVRNGLEGRMDFLCADVFDL 297

Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357
            P    +  +D +++D P              +T+       +    +++  + +  +  
Sbjct: 298 LPTLEHQPDYDFIILDPPA-------------FTKSRKTARNAMRGYKEINYRAMKLLPR 344

Query: 358 GGIVVFSNCSLDKQD 372
           GG +  ++CS    +
Sbjct: 345 GGYLATASCSHFATE 359


>gi|34540589|ref|NP_905068.1| NusB family protein [Porphyromonas gingivalis W83]
 gi|34396902|gb|AAQ65967.1| NusB family protein [Porphyromonas gingivalis W83]
          Length = 364

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/113 (6%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
                 +  + +       LL               D +    ++   +        ++ 
Sbjct: 237 EFVLKTIRRIEQDTDPSAILLPAYKEKD--------DAVFGTTLLRNAIINGQEYRHIIR 288

Query: 69  F-VLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
             ++   + R       ++++++A++L + ++     ++  ++ +K     + 
Sbjct: 289 ENLINWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPKS 341


>gi|18483231|gb|AAL73975.1|AF466201_4 hypothetical protein M3E9.200 [Sorghum bicolor]
          Length = 274

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 46  QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104
           + L+ A+ +   + +  ID ++        + R       +L +++A++         V+
Sbjct: 183 RELLVAVASGWDKHVDIIDKIIPQAWKDEPVARI--LELCILHIAMAEMTSKGTPHKVVI 240

Query: 105 DLAVEQAKRDKEN 117
           + AV+ AKR  + 
Sbjct: 241 NEAVDLAKRFCDG 253


>gi|262197759|ref|YP_003268968.1| methyltransferase type 11 [Haliangium ochraceum DSM 14365]
 gi|262081106|gb|ACY17075.1| Methyltransferase type 11 [Haliangium ochraceum DSM 14365]
          Length = 675

 Score = 38.7 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 20/133 (15%)

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           A    +  G      +LD+    G    +L   G ++ ALD S   L +      R  L 
Sbjct: 436 ALFVAEALGVKPGARLLDIGCGYGRHAMELAAHGYQIVALDYSLPLLLRGADEAQRRGL- 494

Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
             + +  D  D      FD V              +                   R  L 
Sbjct: 495 NINFVHGDMRDLAFDGQFDGVYCLFSTFGYFDEETN-------------------RSTLE 535

Query: 350 QGISFVKPGGIVV 362
                ++PGG +V
Sbjct: 536 GMARALQPGGRMV 548


>gi|328479834|gb|EGF48933.1| 16S rRNA methyltransferase B [Lactobacillus rhamnosus MTCC 5462]
          Length = 53

 Score = 38.7 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 14/65 (21%)

Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
           +V   L + P   E VP+ +    +            +++ PD  +         DGFF 
Sbjct: 1   MVAHFLATHP-EFEQVPVLTLKPLAKTHGAPA-----LQLFPDDYD--------TDGFFI 46

Query: 436 VALRR 440
            +L R
Sbjct: 47  ASLIR 51


>gi|325273728|ref|ZP_08139928.1| SAM-dependent methyltransferase [Pseudomonas sp. TJI-51]
 gi|324101148|gb|EGB98794.1| SAM-dependent methyltransferase [Pseudomonas sp. TJI-51]
          Length = 398

 Score = 38.7 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 20/138 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH----LYAE--DIIEM 296
            VLDL +  GG   Q    GA      D S   L+ +  N         L     D+ E 
Sbjct: 223 RVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGIGEKLTCIEGDVFEA 282

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD ++ D P              + +   D+       R+L  Q +  + 
Sbjct: 283 LRELKAAEERFDVIIADPPA-------------FIKRKKDLKNGEAAYRRLNEQAMRMLS 329

Query: 357 PGGIVVFSNCSLDKQDSE 374
             GI+V ++CS+   + +
Sbjct: 330 KDGILVSASCSMHLPEDD 347


>gi|119475451|ref|ZP_01615804.1| hypothetical protein GP2143_16566 [marine gamma proteobacterium
           HTCC2143]
 gi|119451654|gb|EAW32887.1| hypothetical protein GP2143_16566 [marine gamma proteobacterium
           HTCC2143]
          Length = 400

 Score = 38.7 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302
            VLD+ +  GG   Q  V GA+  +  D S+  L+ +        + AE     D     
Sbjct: 225 RVLDVFSYIGGWGVQAAVFGAESVSCIDASEFALDGVD-------VNAELNQVSDKVGTI 277

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
               FDA+ +         +       +     D+       R++    +  +  GG++V
Sbjct: 278 QGSAFDAMKMLINEGERYDVVIVDPPAFIPKRKDVKSGEQAYRRINELAMRLLSKGGLLV 337

Query: 363 FSNCSLD 369
            ++CS+ 
Sbjct: 338 SASCSMH 344


>gi|303238065|ref|ZP_07324606.1| transcription antitermination factor NusB [Prevotella disiens
           FB035-09AN]
 gi|302481761|gb|EFL44815.1| transcription antitermination factor NusB [Prevotella disiens
           FB035-09AN]
          Length = 355

 Score = 38.7 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 24  SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSL 82
                      +       + D+     +   T+         +     +    R  Y  
Sbjct: 190 PANKANQELLPEFK----DEEDKDFAIKLFRSTILNADTYQRYMSETSRNWDFSRLAYMD 245

Query: 83  QQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121
             ++++++A++L + ++     ++  VE AK     R  +
Sbjct: 246 IVIMQIAIAEMLNFPNIPVSVSINEYVELAKLYSTPRSGS 285


>gi|237731779|ref|ZP_04562260.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Citrobacter sp. 30_2]
 gi|226907318|gb|EEH93236.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Citrobacter sp. 30_2]
          Length = 277

 Score = 38.7 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 9/131 (6%)

Query: 239 TLNNLSVLDLCAAPGG--KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296
             +   +LDL    G              VTA+D     +     N  +L +    +++ 
Sbjct: 107 PASACRILDLGTGTGAIALALATERPDCAVTAVDRMPDAVALAIRNKQQLGINNVCVLQS 166

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ-----RKLLLQG 351
           + F     + FD ++ + P         H      R        A  Q       ++ Q 
Sbjct: 167 NWFSALQGQQFDMIVSNPPYIDEQDP--HLAQGDVRFEPLSALVAGDQGLADIVHIIDQS 224

Query: 352 ISFVKPGGIVV 362
           +  + PGG ++
Sbjct: 225 LRMLTPGGYLL 235


>gi|260428378|ref|ZP_05782357.1| diguanylate cyclase [Citreicella sp. SE45]
 gi|260422870|gb|EEX16121.1| diguanylate cyclase [Citreicella sp. SE45]
          Length = 329

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 17/102 (16%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  +L  V  K  +                +   +Q      +   LR    +D VL  
Sbjct: 124 LAIDMLYLVEAKSAAFEA--SRTLNRRLQGAMLAAEQRAYTDTLTG-LRNRRALDHVLQR 180

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
           +              LL      +L++D+  +  V+     A
Sbjct: 181 L--------------LLEGGNFALLHIDLDYFKQVNDTHGHA 208


>gi|85057607|ref|YP_456523.1| N utilization substance protein B [Aster yellows witches'-broom
          phytoplasma AYWB]
 gi|84789712|gb|ABC65444.1| N utilization substance protein B [Aster yellows witches'-broom
          phytoplasma AYWB]
          Length = 138

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/44 (13%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 56 TLRFLPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDV 98
           +  L  ID ++   +    + R     + ++R++  ++L  ++
Sbjct: 48 IITKLKFIDEIITKSLYDYKINRLNKVDRAIIRLATYELLETNI 91


>gi|168217312|ref|ZP_02642937.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
 gi|182380570|gb|EDT78049.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
          Length = 391

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255
               T    ++   + IV L    +  +++        +        + VLD     G  
Sbjct: 173 EPFDTDIQIVENEVKYIVDLENGQKTGFFLDQKENRAAMHRIC--KGMDVLDCFTHTGSF 230

Query: 256 TAQLIVSGAKVTA-LDVSKRRLEKLRCN------LDRLHLYAEDIIEMDAFDYCPKKLFD 308
                ++GAK    +DVS+  ++    N       DR+     +  ++        K FD
Sbjct: 231 ALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDRVKFEKHNAFDVLGDWSREGKQFD 290

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368
            V++D P              +T+  + + ++    +++ L+GI  VK GG   F+ CS 
Sbjct: 291 VVILDPPA-------------FTKSRNTVKQAIRGYKEINLRGIKMVKEGGY--FATCSC 335

Query: 369 DKQDSEEVVQK 379
                EE ++K
Sbjct: 336 SHYMDEEQLKK 346


>gi|288594|emb|CAA68551.1| methylase [Thermus aquaticus]
          Length = 363

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV-------LWTRDTDDIVKSACFQRKLL 348
            D   + P + FD +L + P    G   ++P         L+ +               L
Sbjct: 88  ADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFL 147

Query: 349 LQGISFVKPGGIVVFSN-CSLDKQDSEEVVQKVLRS 383
            + +  +KPGG++VF    +    +   ++++ L  
Sbjct: 148 EKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAR 183


>gi|332158532|ref|YP_004423811.1| hypothetical protein PNA2_0891 [Pyrococcus sp. NA2]
 gi|331033995|gb|AEC51807.1| hypothetical protein PNA2_0891 [Pyrococcus sp. NA2]
          Length = 396

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 20/133 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY---AEDIIEMDAF 299
            VLD+    GG      ++GA+    +D S + +E  + N     +       +      
Sbjct: 220 RVLDVFTYTGGFAIHAAIAGAEEVIGIDKSPKAIETAKENAKLNGVEDRVNFMVGNAFEE 279

Query: 300 D---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + FD V++D P              + +   D+         +    ++ +K
Sbjct: 280 MEKLQKRGEKFDIVILDPPA-------------FVQHEKDLKAGLRAYFNVNFAALNLLK 326

Query: 357 PGGIVVFSNCSLD 369
            GGI+V  +CS  
Sbjct: 327 DGGILVTCSCSQH 339


>gi|238916542|ref|YP_002930059.1| putative SAM-dependent methyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238871902|gb|ACR71612.1| putative SAM-dependent methyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 420

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 20/131 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDY 301
            VLD     G       ++GAK    LD+S+  +E+ R N     L         +  D 
Sbjct: 245 RVLDCFTHMGTFALNAGIAGAKEVTGLDISEYAVEQARANAKLNGLEDTVHFKCANVLDE 304

Query: 302 CPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            PK     + +D V++D P              +T+  +    +    R++ ++G+  VK
Sbjct: 305 LPKLNEAGEKYDVVILDPPA-------------FTKSREATKNAIKGYREINMKGLKLVK 351

Query: 357 PGGIVVFSNCS 367
            GG +   +CS
Sbjct: 352 DGGYLASCSCS 362


>gi|82621723|gb|ABB86539.1| NusB [uncultured Bacteroidetes bacterium 'SBI2-18 P41A3']
          Length = 325

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQ-ILYLDVA 99
           +  D      ++   +     +   +  V       R       LL++ +++ + +  + 
Sbjct: 205 NDEDAEFGIELIKYVIENKEMLQDEISKVTPNWDNERIAQIDLILLQMCLSEFLFFKSIP 264

Query: 100 DYAVVDLAVEQAKRDKENRH 119
               ++  +E AK    ++ 
Sbjct: 265 LKVSINEYLEIAKEYSSDKS 284


>gi|220934410|ref|YP_002513309.1| modification methylase, HemK family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995720|gb|ACL72322.1| modification methylase, HemK family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 303

 Score = 38.3 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 12/137 (8%)

Query: 235 QLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-E 291
                     VLDLC   G  G         A+V   D+S   L   R N+ R  +    
Sbjct: 124 PWIDPERVERVLDLCTGSGCIGIACAHAFPDARVDLSDISPDALAVARENIRRHGVADRV 183

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI------RRHPDVLWTRDTDDIVKSACFQR 345
             I  D F+    + +D ++ + P      +       RH  VL     +D +       
Sbjct: 184 RAIRSDLFEGLAGERYDLIVSNPPYVDAADMAALTPEFRHEPVLGLASGEDGLD---ATL 240

Query: 346 KLLLQGISFVKPGGIVV 362
           ++L      + PGGI+V
Sbjct: 241 RILRDAPEHLNPGGILV 257


>gi|332687080|ref|YP_004456854.1| dephospho-CoA kinase [Melissococcus plutonius ATCC 35311]
 gi|332371089|dbj|BAK22045.1| dephospho-CoA kinase [Melissococcus plutonius ATCC 35311]
          Length = 198

 Score = 38.3 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/62 (11%), Positives = 22/62 (35%)

Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76
           ++ K       ++  +G    +   + D+ L+  ++         +D  +   L   + 
Sbjct: 38 QIVEKGQPALTAIEQAFGKKILKKNGELDRKLLGELIFHNKEKRRLLDQRMAPFLKKEIL 97

Query: 77 RK 78
          R+
Sbjct: 98 RQ 99


>gi|295100326|emb|CBK97871.1| SAM-dependent methyltransferase [Faecalibacterium prausnitzii L2-6]
          Length = 409

 Score = 38.3 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 19/136 (13%)

Query: 243 LSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
            +VLD     G         GA +VTA D+S   +   + N +R  L   D +  D F+ 
Sbjct: 237 HTVLDCFTHTGSFALNAASGGAARVTAADISADAIAMAQRNAERNGLTNMDFLCEDTFEL 296

Query: 302 CP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
            P        +D +++D P              +T+    +  +    +++  + +  + 
Sbjct: 297 LPRLEKEGHPYDFIILDPPA-------------FTKARRTVENAMRGYKEINYRAMKLLP 343

Query: 357 PGGIVVFSNCSLDKQD 372
            GG +  ++CS    +
Sbjct: 344 RGGYLATASCSHFATE 359


>gi|325106620|ref|YP_004267688.1| methyltransferase type 11 [Planctomyces brasiliensis DSM 5305]
 gi|324966888|gb|ADY57666.1| Methyltransferase type 11 [Planctomyces brasiliensis DSM 5305]
          Length = 423

 Score = 38.3 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 52/207 (25%), Gaps = 31/207 (14%)

Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242
            + I T  H  +           +  P S+  +  F                      N 
Sbjct: 182 HWCISTAPHTESTEGYEHEPQFSEGCPNSVT-IEEFGTRFRVQFSEGHKTGFFCDQRENR 240

Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTA-----------LDVSKRRLEKLRCNLDRLHLYAE 291
             + D C             G  + A           +D+ +  +   R N    +   +
Sbjct: 241 KRIADFCGGAKVLDLCCYSGGFSLQADRLGGAEEVTGVDLDEAAVAMARNNAKLNNQKVK 300

Query: 292 DIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
            +                 +D V++D P                    +  +       L
Sbjct: 301 FVHADVFPYMRDMLRNGNTYDVVILDPP-------------KLINTRGEYDEGRKKYFDL 347

Query: 348 LLQGISFVKPGGIVVFSNCS--LDKQD 372
                  VKPGG+++  +CS  +  ++
Sbjct: 348 NRLACQLVKPGGLLLSCSCSGLMPPEE 374


>gi|189500401|ref|YP_001959871.1| hypothetical protein Cphamn1_1464 [Chlorobium phaeobacteroides BS1]
 gi|189495842|gb|ACE04390.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
          Length = 394

 Score = 38.3 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 18/130 (13%)

Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-----AFDYC 302
             +  G     L    A  T +D+S   L +   N    +L   D+IE D          
Sbjct: 226 FTSDGGFGLNALYGGAASATMVDISHNALLRAEKNAKLNNLSNYDMIEGDAFEVLHRLIS 285

Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            K+ +D V++D P              +T+   ++  +    +KL   G+  V+ GG + 
Sbjct: 286 EKRSYDLVILDPPS-------------FTKSRKNLSSALHAYKKLNKLGLQLVRNGGFLA 332

Query: 363 FSNCSLDKQD 372
            ++CS    +
Sbjct: 333 TASCSHHVSE 342


>gi|115445807|ref|NP_001046683.1| Os02g0320100 [Oryza sativa Japonica Group]
 gi|50252730|dbj|BAD28956.1| phosphate/phosphoenolpyruvate translocator-like [Oryza sativa
           Japonica Group]
 gi|113536214|dbj|BAF08597.1| Os02g0320100 [Oryza sativa Japonica Group]
 gi|215737006|dbj|BAG95935.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 330

 Score = 38.3 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIV------- 338
            L   D I   A D      +D VLVDA C+  G+I+       W   T D         
Sbjct: 241 GLRKCDAIRPSADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERT 300

Query: 339 -KSACFQRKLLLQGISFVKPGGIVVFSNC 366
                 Q +LL  G   +K GG +V+S C
Sbjct: 301 DDLLHLQLRLLTNGFKLLKTGGSLVYSTC 329


>gi|330814127|ref|YP_004358366.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487222|gb|AEA81627.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063]
          Length = 125

 Score = 38.3 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 63  IDAVLDFVLISSL--PRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119
           +D +L   L S++        L+ +L+ ++ ++LY+  +    VVD  +        +  
Sbjct: 49  LDQILSKNLSSNISFKNLDMILKIILKAAIFEVLYMPKIPFKVVVDEYL-AVTEMYYDSS 107

Query: 120 FAKLVNSILRRVSREKI 136
              LVN++L  V + + 
Sbjct: 108 QKGLVNAVLDSVFKSEH 124


>gi|301623390|ref|XP_002941003.1| PREDICTED: hypothetical protein LOC100495334 [Xenopus (Silurana)
           tropicalis]
          Length = 824

 Score = 38.3 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
            + +HLLS    +  SL   L+    D  F+ L+  ++  V A +  ++++   +D V+ 
Sbjct: 51  ELVAHLLSKYHPEEQSLEHFLEESTED--FQSLNDEEERFVGAALCGSVQYRALLDTVVR 108

Query: 69  FVLISSLPRKKYSLQQLLR----VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
                     K S Q L      ++  Q+  L +  +  +  + +  K  K    F  +V
Sbjct: 109 AFYARDGKHCKQSEQYLFVVIGYLATFQLEELGLQTFVRIITSQDVTKMCKFLSFFFNVV 168

Query: 125 NS---ILRRVSREKIELLQRIAGISIIPEW 151
           N    I    S+       +   IS + +W
Sbjct: 169 NLNTWIKDEWSQIYDSNYVKENWISHLLKW 198


>gi|254797209|ref|YP_003082050.1| putative N utilization substance protein B [Neorickettsia risticii
           str. Illinois]
 gi|254590448|gb|ACT69810.1| putative N utilization substance protein B [Neorickettsia risticii
           str. Illinois]
          Length = 141

 Score = 38.3 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 7   ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
           ARL+S  +        +    L+           + + D  L+ +I+ +    +     +
Sbjct: 8   ARLLSIEVCYSSYFSDLPQPELISRALELQEVPYMRRYDLGLLNSILGLCFANIKADTEL 67

Query: 67  LDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVAD-YAVVDLAVEQAK 112
           +   L     + R       LLRV+++++   ++A    V++  V   +
Sbjct: 68  IGRFLSEEWEIDRMDNLKLSLLRVAISELRLSNIAQKNLVINEYVSLGR 116


>gi|1942354|pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942355|pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942410|pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942411|pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
          Length = 421

 Score = 38.3 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 20/151 (13%)

Query: 244 SVLDLCAAPG---GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VL+   A G       +   +G +   +++  + L+              + I  D   
Sbjct: 42  RVLEPACAHGPFLRAFREAHGTGYRFVGVEIDPKALDL---------PPWAEGILADFLL 92

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDV-------LWTRDTDDIVKSACFQRKLLLQGIS 353
           + P + FD +L + P    G   ++P         L+ +               L + + 
Sbjct: 93  WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVR 152

Query: 354 FVKPGGIVVFSN-CSLDKQDSEEVVQKVLRS 383
            +KPGG++VF    +    +   ++++ L  
Sbjct: 153 LLKPGGVLVFVVPATWLVLEDFALLREFLAR 183


>gi|1942356|pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942357|pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|155127|gb|AAA27506.1| methylase [Thermus aquaticus]
          Length = 421

 Score = 38.3 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 20/151 (13%)

Query: 244 SVLDLCAAPG---GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VL+   A G       +   +G +   +++  + L+              + I  D   
Sbjct: 42  RVLEPACAHGPFLRAFREAHGTGYRFVGVEIDPKALDL---------PPWAEGILADFLL 92

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDV-------LWTRDTDDIVKSACFQRKLLLQGIS 353
           + P + FD +L + P    G   ++P         L+ +               L + + 
Sbjct: 93  WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVR 152

Query: 354 FVKPGGIVVFSN-CSLDKQDSEEVVQKVLRS 383
            +KPGG++VF    +    +   ++++ L  
Sbjct: 153 LLKPGGVLVFVVPATWLVLEDFALLREFLAR 183


>gi|237716729|ref|ZP_04547210.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405505|ref|ZP_06082055.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646355|ref|ZP_06724002.1| methyltransferase, FkbM family [Bacteroides ovatus SD CC 2a]
 gi|294806691|ref|ZP_06765522.1| methyltransferase, FkbM family [Bacteroides xylanisolvens SD CC 1b]
 gi|229442712|gb|EEO48503.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356380|gb|EEZ05470.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638310|gb|EFF56681.1| methyltransferase, FkbM family [Bacteroides ovatus SD CC 2a]
 gi|294446111|gb|EFG14747.1| methyltransferase, FkbM family [Bacteroides xylanisolvens SD CC 1b]
          Length = 270

 Score = 38.3 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 66/266 (24%), Gaps = 23/266 (8%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            ++   +++     +            P          +G  R L       + + +D+ 
Sbjct: 2   NILKHTIKKFIYGTLPYYFMKGYKPGSPYLKYYEYIKEHGYSRHLYEFKDEYANMPVDVQ 61

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +   +  +     L           +       +          S          + 
Sbjct: 62  KDEEKGLYYVQKEEKRLYFRKSTPARKIQ-----KYYRALSMEQDKRSPHHYFNSVKEVT 116

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL--DRLHLYAEDIIEMDAF 299
               +D+  A G  + ++I     V   +  ++ LE +R      +  +        D  
Sbjct: 117 GKVFVDVGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQKYVSDHN 176

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               + L D              +    +    D +   + A    K L Q         
Sbjct: 177 SSREQTLDDFFN----------NQTDEHLFLKMDIEGAERHALAGCKNLFQNCQ------ 220

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSP 385
            + F+ C+    D E V+   L    
Sbjct: 221 KLDFAICTYHLHDDEAVISAFLDKHN 246


>gi|300726454|ref|ZP_07059900.1| NusB family protein [Prevotella bryantii B14]
 gi|299776182|gb|EFI72746.1| NusB family protein [Prevotella bryantii B14]
          Length = 320

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 7/107 (6%)

Query: 25  LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQ 83
                     +       + D    R +   T+    +    +     +    R  Y   
Sbjct: 166 ANKADQELLPEYK----DEEDLDFARKLFRSTILNADQYQRYMSDASRNWDFSRLAYMDV 221

Query: 84  QLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
            ++++++A++  + ++     ++  V  AK      H    VN +L 
Sbjct: 222 VIMQIAIAELCTFPNIPASVTINEYVNLAK-LYSTPHSGSYVNGMLD 267


>gi|147918746|ref|YP_687531.1| putative SAM-dependent methyltransferase [uncultured methanogenic
           archaeon RC-I]
 gi|110622927|emb|CAJ38205.1| putative SAM-dependent methyltransferase [uncultured methanogenic
           archaeon RC-I]
          Length = 337

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 26/119 (21%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           V+D+ A  G            V A+D +   +E ++ N+   H+   + +  D  +    
Sbjct: 184 VVDMFAGIGPFAIPAAKKAMYVVAVDKNPYAVEYMKRNIQINHVTNIEAVCADVREIKLP 243

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
           +  D  +++ P S+                           + L +    V+ GGI+ +
Sbjct: 244 QQADRAIMNLPHSA--------------------------HEFLDKAFELVRTGGIIHY 276


>gi|326522879|dbj|BAJ88485.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 275

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 48  LVRAIVNVTL--------RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDV 98
            V  +    L        + +  I+ ++        + R       +L +++A++     
Sbjct: 169 FVLRLARDMLVAVASGWDQHVEVINKIIPQHWKDEPVARI--LELCILHIAMAEMTSKGT 226

Query: 99  ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
                ++ AV+ AKR   +    +++N  LR   ++ +  
Sbjct: 227 PHKVAINEAVDLAKRFC-DGGAPRVINGCLRTYVKDHMSN 265


>gi|146293548|ref|YP_001183972.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella putrefaciens CN-32]
 gi|145565238|gb|ABP76173.1| modification methylase, HemK family [Shewanella putrefaciens CN-32]
          Length = 314

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 7/144 (4%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
            +  A+             +LDLC                A+V ALD+S+  L+  + N+
Sbjct: 118 AEMIANRFSPWLYNKPVTRILDLCTGSACIAIACAYEFEDAEVDALDISEDALDVAQINI 177

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD----DIV 338
           + L +      ++ D F   P+     ++V  P              +  +         
Sbjct: 178 ETLGVMDRVFPMQSDLFSGIPEGPQYDLIVSNPPYVDAEDIGDMPDEYHHEPAIGLASGR 237

Query: 339 KSACFQRKLLLQGISFVKPGGIVV 362
                 +++L     ++ P G++V
Sbjct: 238 DGLDLTKRILANAAQYLTPTGLLV 261


>gi|120598374|ref|YP_962948.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella sp. W3-18-1]
 gi|120558467|gb|ABM24394.1| modification methylase, HemK family [Shewanella sp. W3-18-1]
 gi|319426848|gb|ADV54922.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shewanella putrefaciens 200]
          Length = 314

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 7/144 (4%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
            +  A+             +LDLC                A+V ALD+S+  L+  + N+
Sbjct: 118 AEMIANRFSPWLYNKPVTRILDLCTGSACIAIACAYEFEDAEVDALDISEDALDVAQINI 177

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD----DIV 338
           + L +      ++ D F   P+     ++V  P              +  +         
Sbjct: 178 ETLGVMDRVFPMQSDLFSAIPEGPQYDLIVSNPPYVDAEDIGDMPDEYHHEPAIGLASGR 237

Query: 339 KSACFQRKLLLQGISFVKPGGIVV 362
                 +++L     ++ P G++V
Sbjct: 238 DGLDLTKRILANAAQYLTPTGLLV 261


>gi|119775295|ref|YP_928035.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella amazonensis SB2B]
 gi|119767795|gb|ABM00366.1| Site-specific DNA-methyltransferase (adenine-specific) [Shewanella
           amazonensis SB2B]
          Length = 314

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 235 QLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAE 291
                     VLDLC   G            A+V ALD+S+  L+  + N++   L    
Sbjct: 127 PWLYNKPVNRVLDLCTGSGCIAIACAHTFEDAEVDALDISEDALDVAQINVESHGLVERV 186

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD----DIVKSACFQRKL 347
             ++ D F   PK     ++V  P              +  +               +++
Sbjct: 187 FPMQSDLFSAIPKGPQYDLIVSNPPYVDEEDIGDMPDEYHHEPAIGLASGRDGLDITKRI 246

Query: 348 LLQGISFVKPGGIVV 362
           L     ++ P GI+V
Sbjct: 247 LANAADYLTPSGILV 261


>gi|56758080|gb|AAW27180.1| SJCHGC05007 protein [Schistosoma japonicum]
          Length = 326

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 8/40 (20%)

Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442
           +   L  E   RI P              GFF   L ++ 
Sbjct: 5   LQADLHLERCRRILPHDQ--------NTGGFFIAVLEKIA 36


>gi|288799718|ref|ZP_06405177.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332966|gb|EFC71445.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 322

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
              D+   R +   T+    +  + +     +    R  Y    ++++++A++L +  + 
Sbjct: 204 DVEDKEFARKLFRATILNADQYQSYMSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPSIP 263

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILR 129
               ++  V  AK           +N +L 
Sbjct: 264 VSVTINEYVNLAK-LYSTSRSGGYINGMLD 292


>gi|323492606|ref|ZP_08097750.1| ribosomal RNA large subunit methyltransferase I [Vibrio
           brasiliensis LMG 20546]
 gi|323312981|gb|EGA66101.1| ribosomal RNA large subunit methyltransferase I [Vibrio
           brasiliensis LMG 20546]
          Length = 397

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 22/165 (13%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----AQLIVSGAK 265
           S+  + G   G +  Q  S    ++       L+        G         ++I +   
Sbjct: 192 SVDIIEGHKTGFYLDQRDSRQQSMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVS 251

Query: 266 VTALD--VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
             ALD       L +   +  R      D+ ++          FD V++D P        
Sbjct: 252 QPALDTAKYNAELNEFDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPP-------- 303

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCS 367
                 +    +++   A   + + +  +  +KPGG ++ +S CS
Sbjct: 304 -----KFVSSKNNLTSGANGYKDINMLAMQILKPGGTLLTYS-CS 342


>gi|125587334|gb|EAZ27998.1| hypothetical protein OsJ_11964 [Oryza sativa Japonica Group]
          Length = 287

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS---LQQLLRVSVAQILYLDVADYAV 103
            L R I+        +   +++ +   +   +  +      +L +++A++         V
Sbjct: 182 RLAREILVAVASGWDKHVDIINKITPQNWKDEPVARILELCILHIAMAEMTSKGTPHKIV 241

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           ++ AV+ AKR   +    +++N  LR   ++ + 
Sbjct: 242 INEAVDLAKRFC-DGGAPRVINGCLRTFVKDHMN 274


>gi|156349174|ref|XP_001621948.1| hypothetical protein NEMVEDRAFT_v1g143109 [Nematostella vectensis]
 gi|156208312|gb|EDO29848.1| predicted protein [Nematostella vectensis]
          Length = 388

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 36/199 (18%), Gaps = 8/199 (4%)

Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKE 207
           W   R  ++            C +        +++     TW           G      
Sbjct: 17  WACWRWNSWTRSTWWACWRRNCWTRGTWWACWRWNSWTRGTWWACWRWNSWTRGTWWACW 76

Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT 267
              S      +A   W     S       +      +    C      T     +  +  
Sbjct: 77  RRNSWTRGNWWACWRWNSWTRSTWWACWRWNCWTRGTWW-ACWRRNSWTRSTWWACWRGN 135

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
           +           R +  R   +A            +       +      A        R
Sbjct: 136 SWTRGTWWACWRRNSWTRGTWWACWRWNSWTRGTWWACWKWNSWTRGTWWACWRRNSWTR 195

Query: 324 RHPDVLWTRDTDDIVKSAC 342
                 W  ++        
Sbjct: 196 GTWWACWRWNSWTRGTWWA 214


>gi|329936375|ref|ZP_08286140.1| methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329304171|gb|EGG48052.1| methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 220

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           VLD+    G         GA+VTA+DVS+R +   R N  R  L     +  + F     
Sbjct: 34  VLDVGTGSGALALVAARRGARVTAVDVSRRAVYAARLNAWRAGLR-IRALRGNLFTPVAG 92

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR-KLLLQGISFVKPGGIVV 362
           + FD VL + P     T   H +        D          ++  Q    ++PGG+++
Sbjct: 93  ETFDLVLANPPY--VPTPHGHQEPRGRARAWDAGHDGRLVLDRICGQAPKLLRPGGVLL 149


>gi|298480499|ref|ZP_06998696.1| methyltransferase, FkbM family [Bacteroides sp. D22]
 gi|298273320|gb|EFI14884.1| methyltransferase, FkbM family [Bacteroides sp. D22]
          Length = 270

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 66/266 (24%), Gaps = 23/266 (8%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            ++   +++     +            P          +G  R L       + + +D+ 
Sbjct: 2   NILKHTIKKFIYGTLPYYFMKGYKPGSPYLKYYEYIKEHGYSRHLYEFKDEYANMPVDVQ 61

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +   +  +     L           +       +          S          + 
Sbjct: 62  KDEEKGLYYVQKEEKRLYFRKSTPARKIQ-----KYYRALSMEQDRRSPHHYFNSVKEVT 116

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL--DRLHLYAEDIIEMDAF 299
               +D+  A G  + ++I     V   +  ++ LE +R      +  +        D  
Sbjct: 117 GKVFVDVGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQKYVSDHN 176

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               + L D              +    +    D +   + A    K L Q         
Sbjct: 177 SSREQTLDDFFN----------NQTDEHLFLKMDIEGAERHALAGCKNLFQNCQ------ 220

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSP 385
            + F+ C+    D E V+   L    
Sbjct: 221 KLDFAICTYHLHDDEAVISAFLDKHN 246


>gi|115454421|ref|NP_001050811.1| Os03g0656900 [Oryza sativa Japonica Group]
 gi|31415975|gb|AAP50995.1| unknown protein [Oryza sativa Japonica Group]
 gi|108710180|gb|ABF97975.1| antitermination NusB domain-containing protein, putative, expressed
           [Oryza sativa Japonica Group]
 gi|113549282|dbj|BAF12725.1| Os03g0656900 [Oryza sativa Japonica Group]
 gi|125545109|gb|EAY91248.1| hypothetical protein OsI_12862 [Oryza sativa Indica Group]
          Length = 287

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 47  ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS---LQQLLRVSVAQILYLDVADYAV 103
            L R I+        +   +++ +   +   +  +      +L +++A++         V
Sbjct: 182 RLAREILVAVASGWDKHVDIINKITPQNWKDEPVARILELCILHIAMAEMTSKGTPHKIV 241

Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           ++ AV+ AKR   +    +++N  LR   ++ + 
Sbjct: 242 INEAVDLAKRFC-DGGAPRVINGCLRTFVKDHMN 274


>gi|83956095|ref|ZP_00964577.1| hypothetical protein NAS141_02841 [Sulfitobacter sp. NAS-14.1]
 gi|83839661|gb|EAP78840.1| hypothetical protein NAS141_02841 [Sulfitobacter sp. NAS-14.1]
          Length = 411

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 13/182 (7%)

Query: 69  FVLISSLPRKKYSL--QQLLRVSVAQILYLDVADYAVVDLAVEQAKR-DKENRHFAKLVN 125
             L + +      +     LR+++ +I   +    A +    + A++  +     A+ + 
Sbjct: 183 QHLRAGIAALDEDVSENYALRMALEEIADAEGDTDAYISQQSDLARKSFRGAAEIAQRLL 242

Query: 126 SILRRVSREKIELLQRIAGISIIP-EWFKERLE---------NFYGKERVLAISDACISP 175
              R                  IP EW   R+                            
Sbjct: 243 GAGRLEEAWAAINAPDEDNRGWIPYEWEVTRINVMQAMGQTDAARAFMWTCFARSLNAEH 302

Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235
           L   L    D E  A +  A+    G          +++ P FA+    +   +A I   
Sbjct: 303 LRAWLAGLPDFEDVAAEDQALEHAQGFESFTTALHFLMTWPAFAQAAALITSRAAEIDGN 362

Query: 236 LF 237
            +
Sbjct: 363 HY 364


>gi|170729229|ref|YP_001763255.1| ubiquinone biosynthesis O-methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|169814576|gb|ACA89160.1| ubiquinone biosynthesis O-methyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 270

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295
                N+L++LD+    G     L   GA VT +D S   ++  R + ++      +I  
Sbjct: 67  QDIPFNDLTMLDIGCGVGLLCEPLSKQGAHVTGIDASCYNIDLARQHAEK---NNININY 123

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
                          + +      G+      +       ++++    Q+ L+      V
Sbjct: 124 QHCLAEDLLAKQPINIANNQSDRIGSKHYDVVL-----NTEVIEHVEDQQALIKTCCELV 178

Query: 356 KPGGIVVFSN 365
           KPGGI++ + 
Sbjct: 179 KPGGILIMAT 188


>gi|88797559|ref|ZP_01113148.1| hypothetical protein MED297_10416 [Reinekea sp. MED297]
 gi|88779731|gb|EAR10917.1| hypothetical protein MED297_10416 [Reinekea sp. MED297]
          Length = 414

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 20/135 (14%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD- 300
            VLD+ +  GG        GA      DVS   L  +  N            I+ DAFD 
Sbjct: 239 RVLDVFSYLGGWGITCAAQGAAEVICSDVSNSALSGVMENARLNGCDDRVSTIQGDAFDV 298

Query: 301 ----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  ++ FD V+VD P              +     DI       +KL  Q +  V 
Sbjct: 299 LDQLNQERQRFDVVIVDPPA-------------FIARRKDIAAGERAYQKLNEQAMKLVN 345

Query: 357 PGGIVVFSNCSLDKQ 371
            GG+++ ++CS+  Q
Sbjct: 346 YGGLLISASCSMHLQ 360


>gi|332666408|ref|YP_004449196.1| type 11 methyltransferase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335222|gb|AEE52323.1| Methyltransferase type 11 [Haliscomenobacter hydrossis DSM 1100]
          Length = 284

 Score = 38.0 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 65/250 (26%), Gaps = 42/250 (16%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT----LNNLSVLDLCAA 251
                    +  +  +     G+ +       A+ +   ++            VLD    
Sbjct: 14  EGTRWDYRWVWGVRNTYALHFGYYDEQATHHRAAVANMNKVMADLVNIQPGERVLDAGCG 73

Query: 252 PGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL 311
            GG +  L   G                      + +   +    DA     KK   A  
Sbjct: 74  VGGSSIWLAQHGNCEV------------------VGITPVESQVKDALRNARKKKVHAQT 115

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV--------- 362
                    T             + +   A  +     +    ++PGG +V         
Sbjct: 116 SFILADYRKTPFEDASFDVVWALESVC-HAEQKLDFYREAARLLRPGGRLVMADTFRKGR 174

Query: 363 -FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
            ++      +++E  +++ L            ++A  ++    + L    +  ITP  + 
Sbjct: 175 PYA------EENEFQLRRWLN---CWAIPDLDSAAEHEAHAQKVGLVDFTFRDITPHTMR 225

Query: 422 KIDGVSSGMD 431
            I  +    D
Sbjct: 226 SILNIKEHGD 235


>gi|319951926|ref|YP_004163193.1| nusb antitermination factor [Cellulophaga algicola DSM 14237]
 gi|319420586|gb|ADV47695.1| NusB antitermination factor [Cellulophaga algicola DSM 14237]
          Length = 315

 Score = 38.0 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 42  SQRDQILVRAIVNVTL-RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            Q D    + +++ TL +    +  +          R       LL++++A++L +  + 
Sbjct: 207 DQEDVEFSKRLLSKTLLQNEKLVKEIEGKTPNWDKDRIADIDAILLKMAIAELLNFPSIP 266

Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137
           +   ++  +E AK     +  +  +N IL ++ +E  +
Sbjct: 267 ERVTINEYLELAKEYSTPKS-STFINGILDKLVKEYQQ 303


>gi|308179080|ref|YP_003918486.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307746543|emb|CBT77515.1| putative SAM-dependent methyltransferase [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score = 38.0 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 24/166 (14%)

Query: 202 GIRLKELPESIVSLPGFAEGVW-----WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256
                E  + ++    F E  +             +   +   L+  + LD+ +  GG  
Sbjct: 1   MSHHHEHAQEVLDGVAFWENHYGQSERVWSGKVNQVLENIVAPLDPGTCLDIGSGEGGDV 60

Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316
             L   G K T LD+S   +++ +    +  L                   DA       
Sbjct: 61  LWLASHGWKATGLDISPTAVKRAQEEAAKHGL-------------------DAGQTRFIA 101

Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           S                +      A  +   L +  + V PGG ++
Sbjct: 102 SDLAAWNTDETFDLVTLSFFQAPFAFPRADFLRKAATLVAPGGHLL 147


>gi|209965340|ref|YP_002298255.1| ArsR domain proteni [Rhodospirillum centenum SW]
 gi|209958806|gb|ACI99442.1| ArsR domain proteni [Rhodospirillum centenum SW]
          Length = 329

 Score = 38.0 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 32/156 (20%)

Query: 217 GFAEGVWWVQDASASIPVQLFGTLN---------NLSVLDLCAAPGGKTAQLIVSGAKVT 267
            F E      +  +    +                  +LD+    G           +  
Sbjct: 115 YFRENAARWHEIRSLHVPEREVEEMLLRLVPTEGVQDLLDIGTGTGRMLELFGPRVGRAI 174

Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHP 326
            +D S+  L   R NL+R  L    +   D +    P + FDA++V              
Sbjct: 175 GVDSSREMLAVARVNLERAGLRNCQVRLGDMYQLPLPSQSFDAIIV-------------- 220

Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
                     ++  A     +L +    ++PGG++V
Sbjct: 221 --------HQVLHYAEEPSDVLYEASRLLRPGGVLV 248


>gi|294673578|ref|YP_003574194.1| hypothetical protein PRU_0841 [Prevotella ruminicola 23]
 gi|294471995|gb|ADE81384.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 236

 Score = 38.0 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 14/143 (9%)

Query: 244 SVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300
            +LD+    G            A+VT +D+ +   ++ + N+          I   DA  
Sbjct: 41  RILDIGTGTGLVALMMAQRFPEAQVTGIDIDEDAAQQAQENVVGSPFSDRIMINREDATK 100

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
              K  +DA++ + P                + T      +     L+      +KP GI
Sbjct: 101 IDDKAGYDAIVCNPPYFVDSLTC-----PQDQRTLARHAVSLTYESLMHAASKLLKPNGI 155

Query: 361 VVFSNCSL-DKQDSEEVVQKVLR 382
           +     SL    D+++ V+    
Sbjct: 156 L-----SLVIPADNQDNVESAAA 173


>gi|269101864|ref|ZP_06154561.1| DNA mismatch repair protein MutS [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161762|gb|EEZ40258.1| DNA mismatch repair protein MutS [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 898

 Score = 38.0 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 44  RDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSV 90
           +D  L   +    LR +  ++ +L  +    L   +      +R+++
Sbjct: 362 KDSGLFSELA-GVLRHMGDLERILARLA---LRSARPRDLARMRIAL 404


>gi|13399509|pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
 gi|13399510|pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
          Length = 393

 Score = 38.0 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 20/151 (13%)

Query: 244 SVLDLCAAPG---GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
            VL+   A G       +   +G +   +++  + L+              + I  D   
Sbjct: 22  RVLEPACAHGPFLRAFREAHGTGYRFVGVEIDPKALDL---------PPWAEGILADFLL 72

Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDV-------LWTRDTDDIVKSACFQRKLLLQGIS 353
           + P + FD +L + P    G   ++P         L+ +               L + + 
Sbjct: 73  WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVR 132

Query: 354 FVKPGGIVVFSN-CSLDKQDSEEVVQKVLRS 383
            +KPGG++VF    +    +   ++++ L  
Sbjct: 133 LLKPGGVLVFVVPATWLVLEDFALLREFLAR 163


>gi|331006966|ref|ZP_08330209.1| Methylase of polypeptide chain release factors [gamma
           proteobacterium IMCC1989]
 gi|330419228|gb|EGG93651.1| Methylase of polypeptide chain release factors [gamma
           proteobacterium IMCC1989]
          Length = 289

 Score = 38.0 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 45/176 (25%), Gaps = 9/176 (5%)

Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
             +    G      L   +            V   +A             SV+DL    G
Sbjct: 74  EPIAYIVGEKEFWSLALFVNESTLIPRPDTEVMVETALSLFVDDEPEKQRSVVDLGTGTG 133

Query: 254 G--KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL 311
                         + A D S    E  + N  R  L+   ++  D          D ++
Sbjct: 134 AIALALASEKPCWDIIAADNSVAACELAKKNQQRHQLHNVTVLCSDWLVAVDVADVDLIV 193

Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ-----RKLLLQGISFVKPGGIVV 362
            + P         H      R       +A          ++LQ    ++P G ++
Sbjct: 194 SNPPYIHENDP--HLFQGDVRFEPHSALTAKNNGLADIETIVLQAKHVLRPSGWLL 247


>gi|74003043|ref|XP_856404.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein isoform
           2 [Canis familiaris]
          Length = 182

 Score = 38.0 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 8/32 (25%)

Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
           E  +RI P              GFF   L + 
Sbjct: 4   ERCLRILPHHQ--------NTGGFFVAVLVKK 27


>gi|320528399|ref|ZP_08029561.1| putative transcription antitermination factor NusB [Solobacterium
           moorei F0204]
 gi|320131313|gb|EFW23881.1| putative transcription antitermination factor NusB [Solobacterium
           moorei F0204]
          Length = 150

 Score = 38.0 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67
           R  +   +   +  +  +  L++  +        S+ D   +  ++  ++    R    +
Sbjct: 31  RENAMITVYQYLIVQRDIHALINDVFKVDE----SEIDPYFI-DVIKTSIANEDRYREYI 85

Query: 68  DFVLISSL--PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           D VL       R     + +L    A+          ++D +V+ AKR  ++  + 
Sbjct: 86  DSVLKKGWSYERLGLIEKAILLNGCAEFDLKKTESAVIIDQSVQLAKRYCDSDTYK 141


>gi|329730011|gb|EGG66402.1| conserved domain protein [Staphylococcus epidermidis VCU144]
          Length = 52

 Score = 38.0 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 17/62 (27%)

Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439
            L+      E  P  +                 ++I P             DGFF   ++
Sbjct: 6   FLKRHK-DFEFEPFQNPATGEQV--------KTLQILPQDF--------NSDGFFISKIK 48

Query: 440 RL 441
           R 
Sbjct: 49  RK 50


>gi|110004976|emb|CAK99307.1| hypothetical transcription factor involved in antitermination
           transcription regulator protein [Spiroplasma citri]
          Length = 126

 Score = 38.0 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 53  VNVTLRFLPRIDAVLDFVLISSLP--RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110
           V   L  L  I A ++  L       R     + +L   V +I Y  +A   V++ ++E 
Sbjct: 47  VEEILANLSDIIAKINQHLKPGWDFVRLSNYHKAVLVYGVYEICYQHLAKAIVINESLEI 106

Query: 111 AKRDKENRHFAKLVNSILR 129
            K   E+  F+ + + + +
Sbjct: 107 LKLYGEDVDFSYINSVLDQ 125


>gi|160883972|ref|ZP_02064975.1| hypothetical protein BACOVA_01946 [Bacteroides ovatus ATCC 8483]
 gi|237720459|ref|ZP_04550940.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260172497|ref|ZP_05758909.1| hypothetical protein BacD2_11591 [Bacteroides sp. D2]
 gi|299147049|ref|ZP_07040116.1| methyltransferase, FkbM family [Bacteroides sp. 3_1_23]
 gi|315920791|ref|ZP_07917031.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110702|gb|EDO12447.1| hypothetical protein BACOVA_01946 [Bacteroides ovatus ATCC 8483]
 gi|229450210|gb|EEO56001.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514934|gb|EFI38816.1| methyltransferase, FkbM family [Bacteroides sp. 3_1_23]
 gi|313694666|gb|EFS31501.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 270

 Score = 38.0 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 69/266 (25%), Gaps = 23/266 (8%)

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
            ++   +++     +            P          +G  R L       + + +D+ 
Sbjct: 2   NVLKHTIKKFIYGTLPYYFMKGYKPGSPYLKYYEYIKEHGYSRHLYEFKDEYANMPVDVQ 61

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
              +   +  +     L        +  +       +          S          + 
Sbjct: 62  KDEEKGLYYVQKEKKRLYFRKSTPAKKIQ-----KYYRALSMEQDRRSPHHYFNSVKEVT 116

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL--DRLHLYAEDIIEMDAF 299
               +D+  A G  + ++I     V   +  ++ LE +R      +  +        D  
Sbjct: 117 GKVFVDVGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQKYVSDHN 176

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               + L D              + +  +    D +   + A      L Q         
Sbjct: 177 SSREQTLDDFFN----------NQTNEHLFLKMDIEGAERHALAGCNNLFQNCQ------ 220

Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSP 385
            + F+ C+   +D EEV+   L    
Sbjct: 221 KLDFAICTYHLRDDEEVISAFLDKHN 246


>gi|148377730|ref|YP_001256606.1| transcription termination factor (NusB) [Mycoplasma agalactiae PG2]
 gi|291320415|ref|YP_003515678.1| transcription termination factor NusB [Mycoplasma agalactiae]
 gi|148291776|emb|CAL59165.1| Transcription termination factor (NusB) [Mycoplasma agalactiae PG2]
 gi|290752749|emb|CBH40724.1| Transcription termination factor (NusB) [Mycoplasma agalactiae]
          Length = 139

 Score = 38.0 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 13/138 (9%)

Query: 1   MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
           MKS    RL   ++L            L         F   S  D    + +  ++L   
Sbjct: 1   MKSRREYRLGVINVLYKYE-------LLEAKLLPSQIFSDESDIDNEQFKQLELISL-NY 52

Query: 61  PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE-N 117
                 +   L  +    +    ++ +L  +  ++L   ++   V++ AVE  K   E  
Sbjct: 53  DYYQKTILKFLNQNTAWTKLPALIRAILLNATHELL--SISPKIVINEAVEITKSFYEQE 110

Query: 118 RHFAKLVNSILRRVSREK 135
            +F KLVN++L+ + +  
Sbjct: 111 ANFYKLVNALLQNIYKYF 128


>gi|116242665|sp|P14385|MTTA_THEAQ RecName: Full=Modification methylase TaqI; Short=M.TaqI; AltName:
           Full=Adenine-specific methyltransferase TaqI
 gi|149242148|pdb|2IBS|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position
 gi|149242149|pdb|2IBS|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position
 gi|149242156|pdb|2IBT|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position And An Abasic Site Analog At The
           Target Base Partner Position
 gi|149242157|pdb|2IBT|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position And An Abasic Site Analog At The
           Target Base Partner Position
 gi|157835261|pdb|2JG3|A Chain A, Mtaqi With Baz
 gi|157835264|pdb|2JG3|D Chain D, Mtaqi With Baz
 gi|160285562|pdb|2IH2|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing
           5-Methylpyrimidin- 2(1h)-One At The Target Base Partner
           Position
 gi|160285565|pdb|2IH2|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing
           5-Methylpyrimidin- 2(1h)-One At The Target Base Partner
           Position
 gi|160285571|pdb|2IH4|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
           Target Base Partner Position
 gi|160285574|pdb|2IH4|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
           Target Base Partner Position
 gi|160285579|pdb|2IH5|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Base Partner Position
 gi|160285650|pdb|2NP6|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position
 gi|160285653|pdb|2NP6|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position
 gi|160285658|pdb|2NP7|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position And Pyrrolo-Dc At The
           Target Base Partner Position
          Length = 421

 Score = 38.0 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV-------LWTRDTDDIVKSACFQRKLL 348
            D   + P + FD +L + P    G   ++P         L+ +               L
Sbjct: 88  ADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFL 147

Query: 349 LQGISFVKPGGIVVFSN-CSLDKQDSEEVVQKVLRS 383
            + +  +KPGG++VF    +    +   ++++ L  
Sbjct: 148 EKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAR 183


>gi|33239461|ref|NP_874403.1| transcription antitermination protein NusB [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236986|gb|AAP99055.1| Transcription termination factor, NusB [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 211

 Score = 38.0 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 28  LLDLEYGDSAFRLLSQRD--QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQ 84
           +L   +  S    LS ++  +      V++ +     I+  LD V+    L R     Q 
Sbjct: 97  VLSDTFELSRLLTLSDQEQIRNEAMKRVDLVINKYQIINDALDNVMEGWRLKRLPRIDQD 156

Query: 85  LLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138
           +LR++   +  L        + AV  A R   ++   K++N ILRR+       
Sbjct: 157 ILRLAYIDLYNLKTPIAVSCNEAVNLANRY-SDQQGRKMINGILRRLQSTPSHN 209


>gi|225018806|ref|ZP_03707998.1| hypothetical protein CLOSTMETH_02756 [Clostridium methylpentosum
           DSM 5476]
 gi|224948534|gb|EEG29743.1| hypothetical protein CLOSTMETH_02756 [Clostridium methylpentosum
           DSM 5476]
          Length = 276

 Score = 38.0 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 22/180 (12%)

Query: 196 VMLPTGGIRLKELPESIVSLPGFA--EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253
            +       +     +    P +          + S     ++  + +  SVLD+   PG
Sbjct: 19  EIPFWDDEHISLQMLNAHLNPNYDGASRKLEFIEKSVDWISKILPSEHYPSVLDIGCGPG 78

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313
             T +    G +V  +D S R +   + +  R  L  +   +        KK   A ++ 
Sbjct: 79  LYTERYAKKGYRVVGVDFSHRSINYAQMSAKRKGLPIDYFYQDYLNLSLDKKFDFATMIY 138

Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373
               +  T  R                    ++LL      +KPGG  +    SL + ++
Sbjct: 139 CDFGALSTNDR--------------------KQLLKIIYQHLKPGGRFLLDVFSLTQLEN 178


>gi|188994695|ref|YP_001928947.1| probable nitrogen utilization substance protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594375|dbj|BAG33350.1| probable nitrogen utilization substance protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 348

 Score = 38.0 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 6/113 (5%), Positives = 35/113 (30%), Gaps = 10/113 (8%)

Query: 9   LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68
                 +  + +       LL               D +    ++   +        ++ 
Sbjct: 221 EFVLKTIRRIEQDTDPSAILLPAYKEKD--------DAVFGTTLLRNAIINGQEYRHIIR 272

Query: 69  F-VLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119
             ++   + R       ++++++ ++L + ++     ++  ++ +K     + 
Sbjct: 273 ENLINWEVDRIADMDMLIMQLAITELLHFPNIPVLVTINEYIDLSKLFSTPKS 325


>gi|32490464|dbj|BAC79124.1| putative transcription termination protein [Streptomyces griseus]
          Length = 66

 Score = 38.0 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 86  LRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSI 127
           LR+   +++++D   D  V+D AV+ AK           VN+ 
Sbjct: 19  LRLGAYELIWMDGTPDAVVIDEAVQLAKEF-STDDSPSFVNAC 60


>gi|225712624|gb|ACO12158.1| Glycine N-methyltransferase [Lepeophtheirus salmonis]
          Length = 287

 Score = 38.0 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            N  +VLD+    G  +  L+ +   V + D S   L++      R             F
Sbjct: 59  KNCKNVLDVACGTGIDSVMLLENNFAVVSSDASDHMLKRAGDVRWRRRHEN-------YF 111

Query: 300 DYCPKKLFDAVLV-DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
                +  D + + +      G  +    +        +      QR+ +      +KPG
Sbjct: 112 KDWDIQNMDWLNLKERLVRPAGIEQFDALICMGNSFAHLENDKDQQREAMKNFYHMIKPG 171

Query: 359 GIVV 362
           GI++
Sbjct: 172 GILI 175


>gi|313220041|emb|CBY30905.1| unnamed protein product [Oikopleura dioica]
 gi|313234122|emb|CBY10191.1| unnamed protein product [Oikopleura dioica]
          Length = 280

 Score = 38.0 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 33/177 (18%)

Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF 307
            C   GG+   +   G  V A+D+S   L   R       +  E   E            
Sbjct: 75  GCGIGGGEILMVKNYGVTVHAIDLSHNMLSVGRQRAAENEISNEITFEH----------A 124

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV---FS 364
           +A++ D        I     ++  R+  D          L  +   ++KPGG +V   + 
Sbjct: 125 NALIRDFEEGEFDVIYSRDCIIHIREKAD----------LFSRFYKWLKPGGRLVISDYI 174

Query: 365 NCSLDKQDSEEVVQKV---LRSSPIPVELVPLNSAYWKSIDMAMALS--PEGWIRIT 416
            C     +  +  ++    L      +  +   + + K     +  +   E +I+I 
Sbjct: 175 CC---PDE--QKSEEFWKYLADRKYDLRPMNEYADFLKGAGFDVKATNMSEWFIQIL 226


>gi|294673022|ref|YP_003573638.1| transcription antitermination factor NusB [Prevotella ruminicola
           23]
 gi|294473573|gb|ADE82962.1| transcription antitermination factor NusB [Prevotella ruminicola
           23]
          Length = 282

 Score = 38.0 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 11/121 (9%)

Query: 11  SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70
               +            LL            S+ ++   R +    +         +   
Sbjct: 135 VLKTIKRFDEANGPKQDLLPEWD--------SEEEKDFARKVFRAAIMNADEYQRYMSEA 186

Query: 71  LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
             +    R  Y    L+++++A+++ L +V     ++  VE AK        A  +N +L
Sbjct: 187 SRNWDFSRLAYMDIILMQIAIAEMMTLPNVPISVTINEYVEIAK-FYSTPKSAGYINGML 245

Query: 129 R 129
            
Sbjct: 246 D 246


>gi|219119696|ref|XP_002180602.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408075|gb|EEC48010.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 839

 Score = 38.0 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 20/191 (10%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
                A  L     P     ++   + +V+L           D              +  
Sbjct: 609 STNARARLLEGKPAPEFFPIVENGVKYVVNLD-RDLSTGIFLDQRPQRAWLSRNCCVDTQ 667

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCN------LDRLHLYAEDIIEMDA 298
           VL+  A  G  +     +GA   ++D+SK+ L++L  +             A      D 
Sbjct: 668 VLNCFAHTGAFSVAAASTGASTVSIDLSKKWLDRLSTHLEANDIEFDERHDAIYGDCFDW 727

Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                   + +D V++D P SS G  ++    +                +L+    + VK
Sbjct: 728 LSRLAKRGEKYDIVILDPPSSSVGGRKKKRWSIKN-----------DMDELVALAANLVK 776

Query: 357 PGGIVVFSNCS 367
            GG++  +  S
Sbjct: 777 KGGLLWTTTNS 787


>gi|157874401|ref|XP_001685684.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128756|emb|CAJ08889.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1229

 Score = 38.0 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPG--GIVVFSNCSLDKQDSEEVVQKVLRS 383
           R        +  Q++ L   I  V+    G V+++  S +  ++E VV  VL+ 
Sbjct: 631 RCQRASANFSKLQKQ-LYAAIQAVRADSCGWVIYATQSANVIENEAVVCAVLQR 683


>gi|29840529|ref|NP_829635.1| transcription antitermination protein NusB [Chlamydophila caviae
           GPIC]
 gi|29834878|gb|AAP05513.1| N utilization substance protein B, putative [Chlamydophila caviae
           GPIC]
          Length = 165

 Score = 38.0 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN--VTLRFLPRIDA 65
           R +   +L  +         L+ L   ++A        +    A+      L     +D 
Sbjct: 26  REIVLQMLYALGMDPSCEESLVPLLMSETAVTQ-----RHAFTALSFSKEILAKSSELDL 80

Query: 66  VLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114
           ++   + + SL +     + +LR+++ +  +   +    ++  A    K+ 
Sbjct: 81  LIAQTVKNTSLEKLTLMEKNVLRLTLFEHFHGQPINTAILIAEATRLVKKF 131


>gi|118470561|ref|YP_888580.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118171848|gb|ABK72744.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 518

 Score = 37.6 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 43/146 (29%), Gaps = 22/146 (15%)

Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277
           + E              ++   L     LDL    GG    L   G +VTA+D+S   L 
Sbjct: 324 YGEREQIWSGRVNPQLEKVASDLPAGHALDLGCGEGGDAVWLAERGWRVTAVDISHTALS 383

Query: 278 KLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336
           +      R  +         D  +  P   FD V              H  V   R    
Sbjct: 384 RAAAEAGRRGVADRITFERHDLSESFPDGEFDLV---------SAQFLHSTVRLER---- 430

Query: 337 IVKSACFQRKLLLQGISFVKPGGIVV 362
                    ++L      ++PGG +V
Sbjct: 431 --------PRILSTAARAIRPGGHLV 448


>gi|320169193|gb|EFW46092.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 570

 Score = 37.6 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 13  HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV-NVTLRFLPRIDAVLDFVL 71
            LL    ++  S    + +     + R L QRD+   RAIV   TLR L  + AV++   
Sbjct: 407 ELLRRDYKEDRSTNTAIGISSISMSVRELMQRDRSYARAIVRFATLRNLKVL-AVMNSFF 465

Query: 72  ISSLPR-----------KKYSLQQLLRVSV--AQILYLDVA 99
                R            K  +  L R  +   ++  ++V 
Sbjct: 466 APDFSRQLTIYTADKKSLKRVVSHLFRNGIVDFELTKVNVP 506


>gi|317476854|ref|ZP_07936097.1| ribosomal protein L11 methyltransferase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907029|gb|EFV28740.1| ribosomal protein L11 methyltransferase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 280

 Score = 37.6 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 76/271 (28%), Gaps = 17/271 (6%)

Query: 92  QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151
           + ++        V+  +     +     F +  + I   + ++          I+  P  
Sbjct: 5   EFIFHTTPCTETVNDVLSAVLGEVGFESFVEQPDGIAAYIQKDLYNESSLKEAIADFPLS 64

Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211
             +    +   E      +   +     +               V+  T    + +    
Sbjct: 65  DTQMEYTYREAEDKDWNEEWEKNFFQPIIIGD----------RCVIHSTFHHDIPQADYD 114

Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALD 270
           IV  P  A G    +  S  I   L   L   S+LD+            + G A  TA+D
Sbjct: 115 IVINPQMAFGTGHHETTSLIIGELLDSDLQGKSLLDMGCGTSILAILARMRGAAPCTAID 174

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           + +  +     N++   +    + + DA     K  FD V+ +   +      +      
Sbjct: 175 IDEWCVRNSLENIELNGVDRISVFQGDASALEGKGPFDVVIANINRNILLNDMKQYVCCM 234

Query: 331 T------RDTDDIVKSACFQRKLLLQGISFV 355
                       +      Q +    G+ FV
Sbjct: 235 RPGSELYMSGFYVDDIPVIQAEAERNGLRFV 265


>gi|221639841|ref|YP_002526103.1| diguanylate cyclase [Rhodobacter sphaeroides KD131]
 gi|221160622|gb|ACM01602.1| Diguanylate cyclase [Rhodobacter sphaeroides KD131]
          Length = 335

 Score = 37.6 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  LL  V  K      L  L       R L++ +  L   +    LR    ID  L+ 
Sbjct: 130 LAVELLYLVEAKTAVAEELRRLNGRLERARRLAEEE-ALTDELTG--LRNRRAIDQALEA 186

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
           V+ +  P                +++LD+  +  V+ +   A
Sbjct: 187 VIATRRP--------------FGLMHLDLDFFKEVNDSFGHA 214


>gi|126462825|ref|YP_001043939.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104489|gb|ABN77167.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029]
          Length = 335

 Score = 37.6 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  LL  V  K      L  L       R L++ +  L   +    LR    ID  L+ 
Sbjct: 130 LAVELLYLVEAKTAVAEELRRLNGRLERARRLAEEE-ALTDELTG--LRNRRAIDQALEA 186

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
           V+ +  P                +++LD+  +  V+ +   A
Sbjct: 187 VIATRRP--------------FGLMHLDLDFFKEVNDSFGHA 214


>gi|110638835|ref|YP_679044.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406]
 gi|110281516|gb|ABG59702.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406]
          Length = 389

 Score = 37.6 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 45  DQILVRAIVNVTLRFLPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYA 102
           DQ  +  +   +  F    + ++ D V    + R  ++ + +L++++ ++  + ++    
Sbjct: 281 DQEFMLELYKESTAFDDAAEKLITDKVQNWDIERLAFTDRIILKMALTEMVKFPNIPVKV 340

Query: 103 VVDLAVEQAKRDKENRH 119
            ++  +E +K     + 
Sbjct: 341 TINEYIELSKSYSTPKS 357


>gi|304316987|ref|YP_003852132.1| hypothetical protein Tthe_1538 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778489|gb|ADL69048.1| protein of unknown function Met10 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 391

 Score = 37.6 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 20/133 (15%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRC------NLDRLHLYAEDIIEM 296
            VLD  +  G  +   +  GAK    +D+S+  L+  +        LDR H   ++  ++
Sbjct: 219 DVLDCFSHTGSFSVHALHYGAKSVETVDISQTALDIAKKNIELNGYLDRCHFTCDNAFDL 278

Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356
                  KK FD V++D P              +T+  + +  +    +++ L+ +  + 
Sbjct: 279 LKKYDEKKKKFDVVILDPPA-------------FTKSKETVKDAIRGYKEINLRAMKIIN 325

Query: 357 PGGIVVFSNCSLD 369
            GG ++  +CS  
Sbjct: 326 EGGFLITCSCSQH 338


>gi|312601386|gb|ADQ90641.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168]
          Length = 415

 Score = 37.6 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 57/198 (28%), Gaps = 17/198 (8%)

Query: 34  GDSAFRLLSQRDQILVRAIVNVTLRFLPRID-AVLDFVLISSLPRKKYS----------- 81
                  LS+ D+ + + I+   LR    ID A++   L      ++             
Sbjct: 91  KKYTINDLSENDRGIYQEIMENVLRRYG-IDPAIVLEELKKRKQEQEKDKDKIENCTRIC 149

Query: 82  -LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS--ILRRVSREKIEL 138
            +  + R S+ + + +      ++    +  +  +EN    + V    IL  + + +   
Sbjct: 150 SVLNVNRTSIYEKIRVKKPPKKIIYD-EKLLEWIRENFILNRKVKGRDILYNIYKNQGNF 208

Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML 198
           +              + L      +R               +  +F  E +  K  A + 
Sbjct: 209 VTTYVFQKHYEFLGIKSLAYKKQGKRAPKEQKFLRIWAEDHIKGEFRSENFGEKWFADIK 268

Query: 199 PTGGIRLKELPESIVSLP 216
                       SI+   
Sbjct: 269 FIKINNDWFYLHSIIETK 286


>gi|332558854|ref|ZP_08413176.1| diguanylate cyclase [Rhodobacter sphaeroides WS8N]
 gi|332276566|gb|EGJ21881.1| diguanylate cyclase [Rhodobacter sphaeroides WS8N]
          Length = 335

 Score = 37.6 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  LL  V  K      L  L       R L++ +  L   +    LR    ID  L+ 
Sbjct: 130 LAVELLYLVEAKTAVAEELRRLNGRLERARRLAEEE-ALTDELTG--LRNRRAIDQALEA 186

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
           V+ +  P                +++LD+  +  V+ +   A
Sbjct: 187 VIATRRP--------------FGLMHLDLDFFKEVNDSFGHA 214


>gi|330503343|ref|YP_004380212.1| methyltransferase small [Pseudomonas mendocina NK-01]
 gi|328917629|gb|AEB58460.1| methyltransferase small [Pseudomonas mendocina NK-01]
          Length = 322

 Score = 37.6 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 12/133 (9%)

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                   L  ++ +   A PG  TA  +  GA+V ALD++ + L     N  +  +Y  
Sbjct: 130 YLAHANQPLRRIADIGCGAGPGAITAAQLRPGAEVMALDINHKALAMTAVNARQAGIYNL 189

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTRDTDDIVKSACFQRKLLL 349
            +   D         FD ++ + P          RH               A     +  
Sbjct: 190 RVQRSDLLRDVSG-QFDLIIANPPYMLDSQQRTYRHGGGKH---------GAGLSLAIFD 239

Query: 350 QGISFVKPGGIVV 362
             +  + PGG ++
Sbjct: 240 TAMERLAPGGTLL 252


>gi|261252916|ref|ZP_05945489.1| hypothetical protein VIA_002941 [Vibrio orientalis CIP 102891]
 gi|260936307|gb|EEX92296.1| hypothetical protein VIA_002941 [Vibrio orientalis CIP 102891]
          Length = 397

 Score = 37.6 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 22/165 (13%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----AQLIVSGAK 265
           S+  + G   G +  Q  S    ++       L+        G         ++I +   
Sbjct: 192 SVDIIDGHKTGFYLDQRDSRLQSMKYVQDKEVLNCFSYTGGFGLYALKGGAKRVINADVS 251

Query: 266 VTALD--VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
             ALD       L +   +  R      D+ ++          FD V++D P        
Sbjct: 252 QPALDTAKYNAELNEFDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPP-------- 303

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCS 367
                 +    +++   A   + + +  +  +KPGG ++ +S CS
Sbjct: 304 -----KFVSSKNNLTSGANGYKDINMLAMQILKPGGTLLTYS-CS 342


>gi|313220593|emb|CBY31441.1| unnamed protein product [Oikopleura dioica]
          Length = 661

 Score = 37.6 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 27/130 (20%)

Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF 307
            C   G +       G +V A+D+S+  +          ++  + + E            
Sbjct: 459 GCGVGGAEIFMAQNYGVRVHAIDISQNAINIACDRAAECNISEKLVFE------------ 506

Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV---FS 364
                D      G  +            D +K    + +L ++   ++KPGG +V   + 
Sbjct: 507 ---QADVLSREFGEEQFDVIYS-----KDCLKHIRQKSELFVKFQRWLKPGGQLVIADYI 558

Query: 365 NCSLDKQDSE 374
            C    +++E
Sbjct: 559 CC----EENE 564


>gi|77463981|ref|YP_353485.1| sensor diguanylate cyclase (GGDEF) [Rhodobacter sphaeroides 2.4.1]
 gi|77388399|gb|ABA79584.1| sensor diguanylate cyclase (GGDEF) [Rhodobacter sphaeroides 2.4.1]
          Length = 335

 Score = 37.6 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  LL  V  K      L  L       R L++ +  L   +    LR    ID  L+ 
Sbjct: 130 LAVELLYLVEAKTAVAEELRRLNGRLERARRLAEEE-ALTDELTG--LRNRRAIDQALEA 186

Query: 70  VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111
           V+ +  P                +++LD+  +  V+ +   A
Sbjct: 187 VIATRRP--------------FGLMHLDLDFFKEVNDSFGHA 214


>gi|256421211|ref|YP_003121864.1| exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588]
 gi|256036119|gb|ACU59663.1| Exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588]
          Length = 1152

 Score = 37.6 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 72/209 (34%), Gaps = 8/209 (3%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
           ++  +L  V+   +S+  +L + +  +A   L +R ++ VR       +     D  +  
Sbjct: 35  IAILVLRLVLENGLSIKEILMVTFTKAAVAELEERIRLFVR-TAYKISQGQETRDENIFR 93

Query: 70  VLISSLPRKK-YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128
           ++  ++ R    ++QQ LR +V   L+LD      +    ++   +       +L  + +
Sbjct: 94  LVEEAVERNGLAAVQQQLRDAV---LFLDETAVLTIHSFCQKTLNEFAFE-TDQLFGAEM 149

Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDI 186
            + ++  I    +      +       LE  +  + +  I+ A    +        +   
Sbjct: 150 IQDTKTLIAEEVQKFWRKYVTTLHIRLLEKVWEPDMMEGINVALNEHMGGKRYYAYQPGK 209

Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSL 215
                +            + +   ++  +
Sbjct: 210 RYAIKQKEQEEWLHQLDAIDDKKAAVEKI 238


>gi|296159445|ref|ZP_06842270.1| succinylarginine dihydrolase [Burkholderia sp. Ch1-1]
 gi|295890429|gb|EFG70222.1| succinylarginine dihydrolase [Burkholderia sp. Ch1-1]
          Length = 446

 Score = 37.6 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 20/106 (18%)

Query: 4   GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-----------LSQRDQILVRAI 52
             N R+ +   L  +  +   +  +L  +  +S               L   ++  V   
Sbjct: 331 RENPRVAAY--LDDLTARTGPIDDVLVFDLRESMKNGGGPACLRLRVVLDDAERAAVTQG 388

Query: 53  VN--VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL---RVSVAQI 93
           V     L    R+DA ++      L     +   LL   R ++ ++
Sbjct: 389 VWIDDAL--FGRLDAWIEKHYRDRLAPADLTDPHLLAESRTALDEL 432


>gi|260784255|ref|XP_002587183.1| guanidinoacetate methyltransferase protein [Branchiostoma floridae]
 gi|229272323|gb|EEN43194.1| guanidinoacetate methyltransferase protein [Branchiostoma floridae]
          Length = 236

 Score = 37.6 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 42/142 (29%), Gaps = 5/142 (3%)

Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
                     ++ + T     +  + +  GG+    I  G  + + ++ + ++++     
Sbjct: 32  EHLSIMGKPVMERWQTPYMHKLAKVASCNGGRVL-EIGFGMAIASSEIQRHKIDEHWIIE 90

Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343
               ++   + +              +  D   +          +L+        +    
Sbjct: 91  CNDGVFK-RLQQWVREQKHKIFPIKGMWQDVVPTLPD--GHFDGILYDTYPLSEAEWHTH 147

Query: 344 QRK-LLLQGISFVKPGGIVVFS 364
           Q   +       +KPGG++ + 
Sbjct: 148 QFDFIGKHACRLLKPGGVLTYC 169


>gi|146319475|ref|YP_001199187.1| transcription termination factor [Streptococcus suis 05ZYH33]
 gi|145690281|gb|ABP90787.1| Transcription termination factor [Streptococcus suis 05ZYH33]
          Length = 78

 Score = 37.6 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 1  MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59
          MK+  +A R  +   +  +   +  +         D           + +  +VN    +
Sbjct: 2  MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVADY 61

Query: 60 LPRIDAVLDFVLIS 73
             +D  L   L  
Sbjct: 62 RDDLDKELSSRLKQ 75


>gi|83591212|ref|YP_431221.1| HemK family modification methylase [Moorella thermoacetica ATCC
           39073]
 gi|83574126|gb|ABC20678.1| [protein release factor]-glutamine N5-methyltransferase [Moorella
           thermoacetica ATCC 39073]
          Length = 283

 Score = 37.6 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 12/200 (6%)

Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227
           + +              D     + L  +      + L       V +P     V     
Sbjct: 45  LEEELAPAAAGRFWQAIDRRAAGYPLQYLTGHQEFMSLDFKVTPAVLIPRQDTEVVVEA- 103

Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGG--KTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285
                 ++      + ++ D     G    +    +  A+V A D+S   L   + N  +
Sbjct: 104 -----VLERLDPCESYTIADCGTGSGAIALSLAHYLPRARVYATDISPAALTVAQENARK 158

Query: 286 LHLYA-EDIIEMDAFDYCPKKLFDAVLVDAP---CSSTGTIRRHPDVLWTRDTDDIVKSA 341
           L L A   +++ D          DA++ + P    ++   +            D      
Sbjct: 159 LGLAARVTLLQGDFLAPLRGLKLDALVANPPYIPTAALPGLPADVRSEPRLALDGGPDGL 218

Query: 342 CFQRKLLLQGISFVKPGGIV 361
              R LL      ++PGG++
Sbjct: 219 DAYRFLLPGAAGLLRPGGLL 238


>gi|149574636|ref|XP_001511547.1| PREDICTED: similar to NOL1 protein [Ornithorhynchus anatinus]
          Length = 244

 Score = 37.6 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258
           + +    I + P +  G + +Q AS+ +PV       N  +LD+C APGGKT+ 
Sbjct: 125 VYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQENERILDMCCAPGGKTSY 178


>gi|321463261|gb|EFX74278.1| hypothetical protein DAPPUDRAFT_57380 [Daphnia pulex]
          Length = 522

 Score = 37.2 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL 86
              ++   ++  + +  R +     +V  TL    R D +LD      +   + ++  L+
Sbjct: 117 EFFNITVSNNCSKSVDDRRKAYYMDVVYGTLANFQR-DYLLDEFYNRGIRGDRPTVYALI 175


>gi|146328946|ref|YP_001209003.1| HemK family modification methylase [Dichelobacter nodosus VCS1703A]
 gi|146232416|gb|ABQ13394.1| modification methylase, HemK family [Dichelobacter nodosus
           VCS1703A]
          Length = 276

 Score = 37.2 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 51/234 (21%), Gaps = 7/234 (2%)

Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAI--SDACISPLYIDLTVKFDIETWA-H 191
                      + +PE     LE     ERVL I           + +     +      
Sbjct: 1   MNLWQWLECAAAQLPEKESALLEARLFAERVLNIAPVRQRYRNPELTVPQIAQLNALLLR 60

Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251
           +                   +   P          +      +      +   V+DL   
Sbjct: 61  RARGEPFAYILGNQPFYHLDLKVSPAVLIPR-PETEQLVDAALAKIPPQDCYRVIDLGTG 119

Query: 252 PGG--KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309
            G             +V A+D S   L   + N   L L     +  D          D 
Sbjct: 120 SGAIALAIAAERPHCRVLAVDKSWDALRVAQENARHLQLANVHFVLSDWLTAIADARADM 179

Query: 310 VLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
           ++ + P                                L+      ++P G ++
Sbjct: 180 IVSNPPYIDAHDEHLAALAYEPQMALVSPEHGYADLLHLIAHAGRCLRPNGWLL 233


>gi|146296535|ref|YP_001180306.1| HemK family modification methylase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410111|gb|ABP67115.1| modification methylase, HemK family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 289

 Score = 37.2 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 245 VLDLCAAPG-GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDY 301
            LD+    G    A       KV A+D+S+  L     N     +      +      + 
Sbjct: 125 FLDVGTGSGCIAIALCKFLDCKVIAVDISENALRVAEKNAKLNGVFDKIHFVKSNLFENI 184

Query: 302 CPKKLFDAVLVDAP---CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358
            P   FDA+  + P    +    + +       +          + +++      ++K G
Sbjct: 185 PPSLKFDAIFSNPPYISENEISMLDKRVLKEPKQALFSKENGLYYFQEIAKNARQYLKKG 244

Query: 359 GIVVF 363
           G ++F
Sbjct: 245 GYIIF 249


>gi|153001286|ref|YP_001366967.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella baltica OS185]
 gi|160875957|ref|YP_001555273.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella baltica OS195]
 gi|217972783|ref|YP_002357534.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shewanella baltica OS223]
 gi|304411862|ref|ZP_07393473.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shewanella baltica OS183]
 gi|307303370|ref|ZP_07583125.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shewanella baltica BA175]
 gi|151365904|gb|ABS08904.1| modification methylase, HemK family [Shewanella baltica OS185]
 gi|160861479|gb|ABX50013.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shewanella baltica OS195]
 gi|217497918|gb|ACK46111.1| modification methylase, HemK family [Shewanella baltica OS223]
 gi|304349722|gb|EFM14129.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shewanella baltica OS183]
 gi|306913730|gb|EFN44152.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shewanella baltica BA175]
 gi|315268152|gb|ADT95005.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shewanella baltica OS678]
          Length = 314

 Score = 37.2 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 7/144 (4%)

Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNL 283
            +  A+             +LDLC                A+V ALD+S+  L+  + N+
Sbjct: 118 AEMIANRFSPWLYGKPVTRILDLCTGSACIAIACAYEFEDAEVDALDISEDALDVAQINI 177

Query: 284 DRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD----DIV 338
           + L +      ++ D F   P+     ++V  P              +  +         
Sbjct: 178 ETLGVMDRVFPMQSDLFSAIPEGPQYDLIVSNPPYVDAEDIGDMPDEYHHEPAIGLASGR 237

Query: 339 KSACFQRKLLLQGISFVKPGGIVV 362
                 +++L     ++ P G++V
Sbjct: 238 DGLDLTKRILANAAQYLTPTGLLV 261


>gi|254497856|ref|ZP_05110622.1| protein methyltransferase HemK [Legionella drancourtii LLAP12]
 gi|254352934|gb|EET11703.1| protein methyltransferase HemK [Legionella drancourtii LLAP12]
          Length = 261

 Score = 37.2 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321
               + A DVS+  L   + N     L        D +   P++ + A++ + P  +   
Sbjct: 118 PQWHIVACDVSEEALLIAKENALHHQLSNVTFYHSDWYSNIPQQQYHAIISNPPYIAEQD 177

Query: 322 IRRHPDVLWTRDTDDIVKSACFQ-----RKLLLQGISFVKPGGIVV 362
              +      R       ++  Q       ++ QG  ++ P G+++
Sbjct: 178 PHLNEG--DLRFEPYNALASGQQGLADLLLIIKQGYDYLLPNGVLL 221


>gi|323498381|ref|ZP_08103381.1| ribosomal RNA large subunit methyltransferase I [Vibrio sinaloensis
           DSM 21326]
 gi|323316623|gb|EGA69634.1| ribosomal RNA large subunit methyltransferase I [Vibrio sinaloensis
           DSM 21326]
          Length = 397

 Score = 37.2 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
            L +   +  R      D+ ++          FD V++D P              +    
Sbjct: 263 ELNEFDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPP-------------KFVSSK 309

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCS 367
           +++   A   + + +  +  +KPGG ++ +S CS
Sbjct: 310 NNLTSGANGYKDINMLAMQILKPGGTLLTYS-CS 342


>gi|302334879|ref|YP_003800086.1| SAM-dependent methyltransferase [Olsenella uli DSM 7084]
 gi|301318719|gb|ADK67206.1| SAM-dependent methyltransferase [Olsenella uli DSM 7084]
          Length = 433

 Score = 37.2 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 3/126 (2%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDY 301
            VLD     G         GA      DVS+  L+    N     L         D  +Y
Sbjct: 254 RVLDCFCHVGAFGLNAAAGGAAGVRCVDVSEAALDLAATNSRLNGLGERMSFTCADVLEY 313

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P+ + D  L+ A       I   P   +T+    +  +A    ++    +  +  GG +
Sbjct: 314 LPRLIRDKRLLSAEGGPFDLIVLDPPA-FTKSRSTVRHAAKGYLEINQAAMRLLPRGGYL 372

Query: 362 VFSNCS 367
              +CS
Sbjct: 373 ATCSCS 378


>gi|54027294|ref|YP_121536.1| hypothetical protein nfa53200 [Nocardia farcinica IFM 10152]
 gi|54018802|dbj|BAD60172.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 208

 Score = 37.2 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 20/148 (13%)

Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR 275
             + E          ++  +        + LDL    G     L   G +VTA+D+S   
Sbjct: 12  DFYRERDAVWSGKVNALFAREVEHQTPGTALDLGCGEGADAIWLAERGWQVTAVDISTVA 71

Query: 276 LEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334
           LE+   +     + +       +  +  P   FD V      S                 
Sbjct: 72  LERAAAHAVEAGVDHRITFARHNLLESFPAGSFDLVAAQFLHSPVAAPGERDG------- 124

Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVV 362
                       +L +  + V PGG++V
Sbjct: 125 ------------ILTRAAAAVAPGGLLV 140


>gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
 gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
          Length = 215

 Score = 37.2 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/204 (7%), Positives = 32/204 (15%), Gaps = 8/204 (3%)

Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195
              +     I     W              +         ++  +   + I T  H    
Sbjct: 2   FTCIYWWWWIFTCLHWCWGIFT-CIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWG 60

Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA--APG 253
           +                          WW           +F  ++    +  C     G
Sbjct: 61  IFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWG 120

Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-----AFDYCPKKLFD 308
             T               S+  L  L        ++              + +       
Sbjct: 121 IFTCIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLH 180

Query: 309 AVLVDAPCSSTGTIRRHPDVLWTR 332
                  C             W  
Sbjct: 181 WCWGIFTCVHWCWGIFTCIHWWWW 204


>gi|168212012|ref|ZP_02637637.1| probable S-adenosylmethionine-dependent methltransferase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170710060|gb|EDT22242.1| probable S-adenosylmethionine-dependent methltransferase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 267

 Score = 37.2 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 21/135 (15%)

Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289
           +++ +          +LD+ + PG  + +L+  G +V+ +D+S++ ++  + N++ + L 
Sbjct: 31  STMYMIKEYFPQEGKILDIGSGPGRYSIELLKRGYEVSLMDLSEKSIDMAKNNIESMGLK 90

Query: 290 AEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
           A+D I  D    D+     FD +L+  P            +   +  +D         ++
Sbjct: 91  AKDYICGDALYLDFIKDNTFDGILLMGP------------MYHVKSREDR-------IRI 131

Query: 348 LLQGISFVKPGGIVV 362
           L   +  +KPGGI++
Sbjct: 132 LENCMRILKPGGIIL 146


>gi|300794317|ref|NP_001178611.1| protein SFI1 homolog [Rattus norvegicus]
 gi|109500812|ref|XP_001063601.1| PREDICTED: Sfi1 homolog, spindle assembly associated-like [Rattus
           norvegicus]
          Length = 1209

 Score = 36.8 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 86/371 (23%), Gaps = 40/371 (10%)

Query: 8   RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF--LPRIDA 65
           R+ +   L     K  +L+  L          L+SQR++  V   V    R+     + A
Sbjct: 209 RVHAEQALHAAAVKHRALSLQLQAWLRWQEQLLISQRERRKVATAVRHHQRWQKQRTLKA 268

Query: 66  VLDFV----LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV-----------EQ 110
            L ++    +               R++V QI + D   +                  + 
Sbjct: 269 WLKYLRICRVKRWQNEMAVQFH---RITVLQIHFCD---WQWAWEWRQSLSAHQALVAKL 322

Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170
           A++    R FA   + +L +                 +        ++   + R+  +  
Sbjct: 323 ARKMVLRRAFAHWKHYMLLQEEEAAQREAAAEHHQHCLLHSCFRAFKDNVTRARLKRMRK 382

Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS- 229
           +    L     +      W  ++           L                  W+Q    
Sbjct: 383 SLAHQLRDTTLLHRFWNLWQSRVEQREERVQPPSLLAAQSHYRMTVLRKCVRVWLQYVHK 442

Query: 230 -----ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLD 284
                +     L                               A+   +  LEK    L 
Sbjct: 443 RRCLQSLQARALGHFQQRALPAAFYTWYRVWRWHQQRRTLHTRAVRFHREALEKQVFALW 502

Query: 285 RLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
           R  +       + E  A     ++L                 +             +  A
Sbjct: 503 RQKVSQHREIRLAERMAMLQAEQQLLRRFWF--------VWHQRAAACHQERQRQAMAIA 554

Query: 342 CFQRKLLLQGI 352
                LL +  
Sbjct: 555 HHHSGLLRRAF 565


>gi|319785913|ref|YP_004145388.1| rRNA (guanine-N(2)-)-methyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464425|gb|ADV26157.1| rRNA (guanine-N(2)-)-methyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 358

 Score = 36.8 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 16/191 (8%)

Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231
            ++  +  +     ++       A     G     +      S PG     W   D +++
Sbjct: 144 NLAKFHCRVFWTPPLQGPRDAALAAQWRGGDAVRLQPGGRFHSRPGV--FAWDRIDVASA 201

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
           +      +       DL A  G    +++     VTALD+ +     L            
Sbjct: 202 LLAAHLPSDLRGRGADLGAGWGYLATEVLDRAPGVTALDLYEAEFRALELARR------- 254

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
               +D     P   +  V    P      I  +P         D        ++ +   
Sbjct: 255 ---NLDGARIAPGFHWHDVTAGLPRDGYDFIVSNPPF----HAHDRGDRPELGQRFIEVA 307

Query: 352 ISFVKPGGIVV 362
              ++PGG ++
Sbjct: 308 AQALRPGGRLL 318


>gi|303256279|ref|ZP_07342295.1| methyltransferase [Burkholderiales bacterium 1_1_47]
 gi|330998975|ref|ZP_08322700.1| 23S rRNA m5C1962 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|302861008|gb|EFL84083.1| methyltransferase [Burkholderiales bacterium 1_1_47]
 gi|329575717|gb|EGG57243.1| 23S rRNA m5C1962 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 408

 Score = 36.8 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 21/133 (15%)

Query: 243 LSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA-------EDII 294
           +  L+     GG +  L   G  +V ++D S   L+  + N  R             ++ 
Sbjct: 231 MRALNCFCYTGGFSLALKAGGAEEVVSIDSSADALQMAQENAKRNGFDDGSMKWIEANVF 290

Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354
           E         + FD V++D P              +      + K+A   + + L G+  
Sbjct: 291 EALREFRDKGEQFDLVILDPP-------------KFASSHHHVDKAARAYKDINLNGLRI 337

Query: 355 VKPGGIVVFSNCS 367
           + PGG ++  +CS
Sbjct: 338 LAPGGQLLTFSCS 350


>gi|167040421|ref|YP_001663406.1| hypothetical protein Teth514_1785 [Thermoanaerobacter sp. X514]
 gi|300913707|ref|ZP_07131024.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
 gi|307723278|ref|YP_003903029.1| hypothetical protein Thet_0066 [Thermoanaerobacter sp. X513]
 gi|166854661|gb|ABY93070.1| hypothetical protein Teth514_1785 [Thermoanaerobacter sp. X514]
 gi|300890392|gb|EFK85537.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
 gi|307580339|gb|ADN53738.1| hypothetical protein Thet_0066 [Thermoanaerobacter sp. X513]
          Length = 349

 Score = 36.8 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 76/260 (29%), Gaps = 31/260 (11%)

Query: 6   NAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--------DQILVRAI---- 52
           N+R L+++ +L  V + +  L  LL        +   S+         ++  +  +    
Sbjct: 39  NSRALIAASMLYEVYKDKKYLD-LLKRYLSFLIYAQNSKGYFRNFMNYNREFIEEVGSED 97

Query: 53  VNVTLRFLPRIDAVLDFVLISS--------LPRKKYSLQQL--LRVSVAQILYLDVADYA 102
                R L  +  +L+  L +         + +   ++  L  LR +   ++ L +   +
Sbjct: 98  CFG--RTLWALGYLLNTNLSNGYQSVAVTLIKKALPNVANLNSLRGNAYSLIGLSLLYSS 155

Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162
            V    ++  ++       K+V         E       +   + +  W   R       
Sbjct: 156 DVTEFNKEKIKNLITSISKKIVQKYRENKDGEWKWFENIMTYSNAVLPWALLRSYIITKD 215

Query: 163 ERVLAISDACISPLYID-----LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217
           E VL ++   +  L               + W  K +          ++    +++    
Sbjct: 216 EEVLDVAKESMEFLEKVTFRSGYFKPIGCKDWYKKGDEKPAEFDEQPVEACETALMYTEA 275

Query: 218 FAEGVWWVQDASASIPVQLF 237
           +           +      F
Sbjct: 276 YKIFQEEKYKEKSLKCYNWF 295


>gi|194736219|ref|YP_002117416.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197300612|ref|ZP_03166137.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194711721|gb|ACF90942.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197291721|gb|EDY31071.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 541

 Score = 36.8 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 20/119 (16%)

Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303
            +LDL   PG  T  L   G   T +D S   +   R      +L   D I+ D   Y P
Sbjct: 68  RILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQAANL-NIDYIQQDIRTYHP 126

Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362
            + FD +++                  T    ++  +A  Q  L+     ++KPGG ++
Sbjct: 127 TEPFDFIMM------------------TFGELNVFSAADAQ-SLISHCAQWLKPGGKLL 166


>gi|148980399|ref|ZP_01816042.1| putative SAM-dependent methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145961271|gb|EDK26583.1| putative SAM-dependent methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 397

 Score = 36.8 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 22/165 (13%)

Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----AQLIVSGAK 265
           S+  + G   G +  Q  S    ++     + L+        G         ++I +   
Sbjct: 192 SVNIMEGHKTGFYMDQRDSRKESMKYVKGKDVLNCFSYTGGFGLYALKGDAKRVINADVS 251

Query: 266 VTALD--VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323
             ALD       L +   +  R      D+ ++          FD V++D P        
Sbjct: 252 QLALDTAKFNAELNEFDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPP-------- 303

Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCS 367
                 +    +++   A   + + +  +  +KPGG ++ +S CS
Sbjct: 304 -----KFVSSKNNLTSGANGYKDVNMLAMQILKPGGTLLTYS-CS 342


>gi|146307328|ref|YP_001187793.1| methyltransferase small [Pseudomonas mendocina ymp]
 gi|145575529|gb|ABP85061.1| methyltransferase small [Pseudomonas mendocina ymp]
          Length = 322

 Score = 36.8 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 8/131 (6%)

Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291
                   L  ++ +   A PG  TA  +  GA+V ALD+++R L     N     ++  
Sbjct: 130 HLTHCHQPLRRIADIGCGAGPGAITAAQLRPGAQVLALDINERALAMTAVNARLAGIFNL 189

Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351
           ++ + D         FD ++ + P        +                A     +    
Sbjct: 190 EVSKSDLLRDVDGY-FDLIIANPP---YMLDPQQRTYRH----GGGKHGAGLSLAIFDTA 241

Query: 352 ISFVKPGGIVV 362
           +  + PGG ++
Sbjct: 242 MERLAPGGTLL 252


>gi|224543282|ref|ZP_03683821.1| hypothetical protein CATMIT_02482 [Catenibacterium mitsuokai DSM
          15897]
 gi|224523815|gb|EEF92920.1| hypothetical protein CATMIT_02482 [Catenibacterium mitsuokai DSM
          15897]
          Length = 80

 Score = 36.8 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 7  ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66
          AR  +   +   +    S   L +  + D A       +Q     +++  +      +A+
Sbjct: 9  AREKAVIAVYQWLTVDASKEELKEYVHADEALIEGRSAEQ-FCYWLIDTVMENKGSYEAL 67

Query: 67 LDFVLIS 73
          L+  L  
Sbjct: 68 LNTKLKK 74


>gi|195575711|ref|XP_002077720.1| GD22923 [Drosophila simulans]
 gi|194189729|gb|EDX03305.1| GD22923 [Drosophila simulans]
          Length = 554

 Score = 36.4 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           + LL  +      ++ L +     +A   LS++D+  ++ + N TL  L ++
Sbjct: 235 AQLLERLTSLGGKVSALSETVQRPAAPLDLSEKDRAYIQELNNDTLNALAQL 286


>gi|126699367|ref|YP_001088264.1| hypothetical protein CD1759 [Clostridium difficile 630]
 gi|255100895|ref|ZP_05329872.1| hypothetical protein CdifQCD-6_08789 [Clostridium difficile
           QCD-63q42]
 gi|255306785|ref|ZP_05350956.1| hypothetical protein CdifA_09342 [Clostridium difficile ATCC 43255]
 gi|115250804|emb|CAJ68628.1| putative SAM-dependent methyltransferase [Clostridium difficile]
          Length = 276

 Score = 36.4 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 20/183 (10%)

Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           L +  +      +          I  + L   + +    A   +   + S +  V +   
Sbjct: 5   LCMYLERPELYKQSEINFWDDEYISKQLLKAHLDTNFEGASRNFNFIEDSVNWIVTVANP 64

Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299
            N   +LDL   PG    +    G KVT +D SKR +   +      +L    + +    
Sbjct: 65  ANYPKLLDLGCGPGLYAEKFAQKGYKVTGIDFSKRSINYAQNRNKETNLNINYLFQSYLN 124

Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359
               ++   A L+     +  T  R                      L+ +    +KPGG
Sbjct: 125 MNYNEEFDLATLIYCDYGALSTENRRL--------------------LMEKIYDSLKPGG 164

Query: 360 IVV 362
            ++
Sbjct: 165 KLI 167


>gi|240047408|ref|YP_002960796.1| hypothetical protein MCJ_002820 [Mycoplasma conjunctivae HRC/581]
 gi|239984980|emb|CAT04973.1| HYPOTHETICAL PROTEIN MCJ_002820 [Mycoplasma conjunctivae]
          Length = 133

 Score = 36.4 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 40/128 (31%), Gaps = 13/128 (10%)

Query: 10  VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69
               LL         L   +++         L      + + I     +    +  ++  
Sbjct: 2   AVISLLYQSEL----LEEQINVGQIFQDHPELDSEQIKMFKFIA----KNYSLLQKLIAA 53

Query: 70  VL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-RHFAKLVNS 126
            L       R     + +L   ++++ + +     V++  +E +K    +       +N+
Sbjct: 54  HLNSQWQWERILPLNRAILLYGISELFFSE--HRIVINEMIEISKEFTADGDKDYGFINA 111

Query: 127 ILRRVSRE 134
           ++  V + 
Sbjct: 112 VIENVYQY 119


>gi|270339970|ref|ZP_06006596.2| NusB family protein [Prevotella bergensis DSM 17361]
 gi|270333141|gb|EFA43927.1| NusB family protein [Prevotella bergensis DSM 17361]
          Length = 369

 Score = 36.4 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 42  SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVA 99
            + D+     +   T+         +     +    R  Y    ++++++A++L + ++ 
Sbjct: 204 DEEDKDFACKLFRATILNADDYHRYMSETSRNWDFSRLAYMDVVIMQIAIAEMLTFPNIP 263

Query: 100 DYAVVDLAVEQAKRDKENRHFA 121
               ++  VE AK     R  A
Sbjct: 264 ATVTINEYVELAKLYSTPRSGA 285


>gi|301058049|ref|ZP_07199104.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300447875|gb|EFK11585.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 264

 Score = 36.4 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 66/259 (25%), Gaps = 37/259 (14%)

Query: 23  ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82
             L  LL        +      D+     +    LR+    DAV+D  L     +     
Sbjct: 15  AFLASLLSKANHALVYHEPEPEDR-----LYFG-LRYAGHFDAVVDNYLKRRFQKILPKD 68

Query: 83  QQL---------LRVSVAQILYLDVADYAVV------------DLAVEQAKRDKENRHFA 121
           + +         LR    ++ +L       +                  A    + +   
Sbjct: 69  KSIQHYGEVNSYLR---YEVDWLRDKFDPAIIHVVRDGRDFVSSAYPRVAYTVNDKKMTI 125

Query: 122 KLVNSILRRVSREKIELLQRIAGISII-PEWFKERLENFYGKERVLAISDACISPLYIDL 180
              +        + +   +++    +   E+   + +     E+++   +     L   +
Sbjct: 126 VPKSGDAYAEKWQNMSRFEKLCWYWMHTNEFLASKTDKRVQFEKLIGDYEYFEKNLLNQI 185

Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
            +      W  ++      T    +K+  + ++ +    +                +   
Sbjct: 186 GLYISKNLWEEQIQKPKNTTKHFLMKKRIKRLLGMRKQDDNTI------PIAHWNKWDNE 239

Query: 241 NNLSVLDLCAAPGGKTAQL 259
                 D+C+    K    
Sbjct: 240 RLSQFDDICSGTMKKLGYY 258


>gi|195350291|ref|XP_002041674.1| GM16623 [Drosophila sechellia]
 gi|194123447|gb|EDW45490.1| GM16623 [Drosophila sechellia]
          Length = 554

 Score = 36.4 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 12  SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
           + LL  +      ++ L +     +A   LS++D+  ++ + N TL  L ++
Sbjct: 235 AQLLERLTTLGGKVSALSETVQRPAAPLDLSEKDRAYIQELNNDTLNALAQL 286


>gi|254424195|ref|ZP_05037913.1| hypothetical protein S7335_4353 [Synechococcus sp. PCC 7335]
 gi|196191684|gb|EDX86648.1| hypothetical protein S7335_4353 [Synechococcus sp. PCC 7335]
          Length = 249

 Score = 36.4 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 19/153 (12%)

Query: 212 IVSLPGFAEGVW-WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270
           + ++P F +     +    AS   Q+     N   LDL         +     A+    D
Sbjct: 55  VEAMPVFRDWAAGSLNSRVASPFWQIAKPKKNQHCLDLGCGFSFLIYEWKAWQARFYGQD 114

Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330
           VS+  ++ L               ++D+  +   K   A  +D P  S   +       +
Sbjct: 115 VSEFAVKTLHQRGP----------QLDSKLFQGVKQGAAHQLDYPPESFDMVIATGFSCY 164

Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363
                D  ++      ++      +KPGG  VF
Sbjct: 165 Y--PMDYWQT------VIEVVKPLLKPGGFFVF 189


>gi|307942841|ref|ZP_07658186.1| double-strand break repair protein AddB [Roseibium sp. TrichSKD4]
 gi|307773637|gb|EFO32853.1| double-strand break repair protein AddB [Roseibium sp. TrichSKD4]
          Length = 1058

 Score = 36.4 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 14/89 (15%)

Query: 5   MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
           + AR  +   L        S+   L           L   D+ L R + +   R+  ++D
Sbjct: 372 IAARNEADEAL--------SIAIALREALEVGETAALISPDRFLTRRVASELARWKIQVD 423

Query: 65  AVLDFVLISSLPRKKYSLQQLL--RVSVA 91
                     L +   ++  +L  ++++ 
Sbjct: 424 ----DSAGRPLDQTPPAILAILTAKLALY 448


>gi|328949574|ref|YP_004366909.1| Eco57I restriction endonuclease [Marinithermus hydrothermalis DSM
           14884]
 gi|328449898|gb|AEB10799.1| Eco57I restriction endonuclease [Marinithermus hydrothermalis DSM
           14884]
          Length = 409

 Score = 36.4 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 43/140 (30%), Gaps = 11/140 (7%)

Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDTDDIVKS 340
           +    ++  D   + P + FD +L + P    G          R     +          
Sbjct: 73  VPGARLVHADFLLWEPAERFDLILGNPPYGIIGVPGHYAMHALREAKRAYRAKFQTWYGR 132

Query: 341 ACFQRKLLLQGISFVKPGGIVVFSN-CSLDKQDSEEVVQKVLRSSP---IPVELVPLNSA 396
                  +   ++ +KP G +V+    S    +  + +++ L +     +          
Sbjct: 133 YNVYGAFIEHAVNLLKPEGELVYVVPASWMILEEFKRLREFLAAHGTLEVHYLGRAFPGV 192

Query: 397 YWKSIDMAMALSPEGWIRIT 416
              ++ +    +  G +R+ 
Sbjct: 193 RVTAVVLHFTKARPGELRLW 212


>gi|119590103|gb|EAW69697.1| hCG39703, isoform CRA_f [Homo sapiens]
          Length = 324

 Score = 36.4 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 44/158 (27%)

Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244
           D+     K   +      + +      +   P +  G   +QD ++ +P  L        
Sbjct: 113 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 172

Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304
           V+D CAAPG KT+ L        +L ++               L +  +  +    +   
Sbjct: 173 VIDACAAPGNKTSHLAALLKNQGSLPLTWMPSGWHPWPRCWPGLASLAVNWLRRTSWRSP 232

Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342
               A +                   +  +      A 
Sbjct: 233 PRIHATMRSTTSCWILPAVARVCRADSWRSPGQAHLAR 270


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.115    0.313 

Lambda     K      H
   0.267   0.0350    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,750,816,591
Number of Sequences: 14124377
Number of extensions: 97214070
Number of successful extensions: 372238
Number of sequences better than 10.0: 7066
Number of HSP's better than 10.0 without gapping: 5851
Number of HSP's successfully gapped in prelim test: 1215
Number of HSP's that attempted gapping in prelim test: 349986
Number of HSP's gapped (non-prelim): 8021
length of query: 445
length of database: 4,842,793,630
effective HSP length: 142
effective length of query: 303
effective length of database: 2,837,132,096
effective search space: 859651025088
effective search space used: 859651025088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 82 (36.4 bits)